Query 029867
Match_columns 186
No_of_seqs 208 out of 1629
Neff 8.2
Searched_HMMs 29240
Date Mon Mar 25 07:26:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029867.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029867hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1w4s_A Polybromo, polybromo 1 99.9 2.2E-26 7.5E-31 176.1 9.1 104 2-105 36-142 (174)
2 3swr_A DNA (cytosine-5)-methyl 99.8 1.9E-20 6.5E-25 174.1 10.9 101 1-103 167-279 (1002)
3 3av4_A DNA (cytosine-5)-methyl 99.8 1E-19 3.4E-24 172.8 10.6 100 2-103 479-591 (1330)
4 1wep_A PHF8; structural genomi 99.8 3E-20 1E-24 124.3 3.7 63 99-161 3-65 (79)
5 4dov_A ORC1, origin recognitio 99.8 2.1E-18 7.2E-23 128.2 12.4 100 2-104 48-159 (163)
6 3kqi_A GRC5, PHD finger protei 99.7 6.8E-20 2.3E-24 121.4 -0.4 64 105-168 7-73 (75)
7 1we9_A PHD finger family prote 99.7 8.8E-18 3E-22 107.8 3.4 56 106-161 4-60 (64)
8 3swr_A DNA (cytosine-5)-methyl 99.7 6.1E-17 2.1E-21 150.7 10.4 98 6-103 389-499 (1002)
9 3o7a_A PHD finger protein 13 v 99.6 8E-17 2.7E-21 99.1 2.2 49 107-158 3-51 (52)
10 3o70_A PHD finger protein 13; 99.6 1.5E-16 5.3E-21 103.0 2.5 53 104-159 15-67 (68)
11 4ft4_B DNA (cytosine-5)-methyl 99.6 1.1E-15 3.8E-20 140.0 8.3 98 6-103 70-178 (784)
12 1wee_A PHD finger family prote 99.6 1.6E-16 5.6E-21 104.2 2.0 56 105-161 13-68 (72)
13 2kgg_A Histone demethylase jar 99.6 4.2E-16 1.4E-20 95.8 2.8 47 110-157 5-52 (52)
14 3av4_A DNA (cytosine-5)-methyl 99.6 2.9E-15 1E-19 142.5 7.6 97 7-103 702-810 (1330)
15 1wem_A Death associated transc 99.5 2.5E-16 8.7E-21 104.4 -0.9 56 105-161 13-72 (76)
16 1wew_A DNA-binding family prot 99.5 5.5E-16 1.9E-20 103.2 0.5 55 106-161 14-74 (78)
17 2rsd_A E3 SUMO-protein ligase 99.5 2E-15 7E-20 97.8 1.7 54 106-160 8-66 (68)
18 2vpb_A Hpygo1, pygopus homolog 99.5 8.7E-16 3E-20 98.5 -1.5 49 110-158 11-65 (65)
19 3kv5_D JMJC domain-containing 99.5 4.2E-15 1.4E-19 129.3 0.9 65 103-167 32-99 (488)
20 2xb1_A Pygopus homolog 2, B-ce 99.5 4.8E-15 1.6E-19 103.9 0.8 50 112-161 8-63 (105)
21 3kv4_A PHD finger protein 8; e 99.5 2.1E-15 7.1E-20 129.7 -1.3 56 106-161 3-58 (447)
22 2jmi_A Protein YNG1, ING1 homo 99.5 8.7E-15 3E-19 99.4 1.1 48 106-158 24-75 (90)
23 1wen_A Inhibitor of growth fam 99.4 2.8E-14 9.5E-19 93.1 3.0 51 106-161 14-67 (71)
24 1x4i_A Inhibitor of growth pro 99.4 7.8E-15 2.7E-19 95.4 -1.4 51 106-161 4-57 (70)
25 3c6w_A P28ING5, inhibitor of g 99.4 1.7E-14 5.7E-19 90.8 -0.1 49 106-159 7-58 (59)
26 2ri7_A Nucleosome-remodeling f 99.4 1.2E-14 4.1E-19 110.6 -1.1 56 106-161 6-61 (174)
27 2k16_A Transcription initiatio 99.4 3.4E-14 1.2E-18 93.7 0.2 54 106-161 16-70 (75)
28 2g6q_A Inhibitor of growth pro 99.4 3.6E-14 1.2E-18 90.2 -0.0 49 106-159 9-60 (62)
29 1weu_A Inhibitor of growth fam 99.4 9.6E-14 3.3E-18 94.4 1.8 51 106-161 34-87 (91)
30 2vnf_A ING 4, P29ING4, inhibit 99.4 5.6E-14 1.9E-18 88.7 -0.2 49 106-159 8-59 (60)
31 2lv9_A Histone-lysine N-methyl 99.4 3.6E-13 1.2E-17 93.2 3.7 52 106-160 26-77 (98)
32 3lqh_A Histone-lysine N-methyl 99.3 1.2E-13 4.1E-18 105.8 1.1 54 108-161 2-65 (183)
33 3pur_A Lysine-specific demethy 99.3 1.2E-12 4.1E-17 113.6 3.3 56 116-171 51-109 (528)
34 2fl7_A Regulatory protein SIR3 99.0 4E-10 1.4E-14 88.4 6.8 98 7-104 66-189 (232)
35 1m4z_A Origin recognition comp 99.0 4.4E-10 1.5E-14 88.5 6.5 98 7-104 66-189 (238)
36 3rsn_A SET1/ASH2 histone methy 98.9 6.1E-10 2.1E-14 84.1 4.3 55 106-160 3-60 (177)
37 1f62_A Transcription factor WS 98.8 7.7E-10 2.6E-14 67.2 0.6 46 112-159 5-50 (51)
38 2yt5_A Metal-response element- 98.7 3.6E-09 1.2E-13 67.7 2.2 56 108-163 6-65 (66)
39 2yql_A PHD finger protein 21A; 98.7 4.4E-09 1.5E-13 65.1 1.5 47 107-158 8-55 (56)
40 2l5u_A Chromodomain-helicase-D 98.7 2.6E-09 9E-14 67.3 0.3 49 106-159 9-58 (61)
41 3asl_A E3 ubiquitin-protein li 98.7 6.8E-09 2.3E-13 67.2 2.2 47 112-159 23-69 (70)
42 2e6r_A Jumonji/ARID domain-con 98.7 4.9E-09 1.7E-13 71.5 1.6 51 108-160 16-67 (92)
43 2puy_A PHD finger protein 21A; 98.7 2.8E-09 9.6E-14 67.0 0.1 49 108-161 5-54 (60)
44 2ku7_A MLL1 PHD3-CYP33 RRM chi 98.6 6.8E-09 2.3E-13 75.0 1.3 40 122-161 1-46 (140)
45 1xwh_A Autoimmune regulator; P 98.6 1.6E-08 5.6E-13 64.6 2.6 50 107-161 7-57 (66)
46 1wev_A Riken cDNA 1110020M19; 98.6 2.2E-08 7.6E-13 67.6 3.4 63 108-170 16-83 (88)
47 1mm2_A MI2-beta; PHD, zinc fin 98.6 1.4E-08 4.6E-13 64.0 2.0 50 106-160 7-57 (61)
48 2e6s_A E3 ubiquitin-protein li 98.6 3.1E-08 1.1E-12 65.2 3.7 46 112-158 31-76 (77)
49 1fp0_A KAP-1 corepressor; PHD 98.6 7.3E-08 2.5E-12 64.8 5.1 62 107-173 24-86 (88)
50 2ku3_A Bromodomain-containing 98.5 1.3E-08 4.6E-13 66.0 -0.1 51 108-161 16-68 (71)
51 3shb_A E3 ubiquitin-protein li 98.5 6E-08 2E-12 63.8 2.7 46 112-158 31-76 (77)
52 3ask_A E3 ubiquitin-protein li 98.4 1.2E-07 4.2E-12 74.3 2.8 46 112-158 179-224 (226)
53 2l43_A N-teminal domain from h 98.3 4E-08 1.4E-12 66.4 -0.8 53 108-163 25-79 (88)
54 2lri_C Autoimmune regulator; Z 98.3 1.5E-07 5.2E-12 60.1 1.1 45 110-159 14-59 (66)
55 2kwj_A Zinc finger protein DPF 98.2 2.7E-07 9.1E-12 65.3 1.4 50 110-161 60-110 (114)
56 3v43_A Histone acetyltransfera 98.2 5.4E-07 1.8E-11 63.5 2.9 49 110-159 63-112 (112)
57 3o36_A Transcription intermedi 98.2 1.1E-06 3.7E-11 67.1 4.4 48 109-161 5-53 (184)
58 4gne_A Histone-lysine N-methyl 98.2 4.8E-07 1.6E-11 63.1 1.6 46 106-157 13-60 (107)
59 3u5n_A E3 ubiquitin-protein li 98.2 6.2E-07 2.1E-11 69.7 2.3 49 108-161 7-56 (207)
60 2ysm_A Myeloid/lymphoid or mix 98.1 1E-06 3.4E-11 61.8 2.0 50 110-161 56-106 (111)
61 4bbq_A Lysine-specific demethy 97.9 5.6E-06 1.9E-10 58.4 2.5 43 118-160 70-115 (117)
62 2ysm_A Myeloid/lymphoid or mix 97.7 2E-05 7E-10 55.1 3.4 50 107-158 6-56 (111)
63 2ro1_A Transcription intermedi 97.5 7.9E-05 2.7E-09 57.0 4.4 48 110-162 4-52 (189)
64 3v43_A Histone acetyltransfera 97.2 5.3E-05 1.8E-09 53.1 0.2 38 120-157 23-62 (112)
65 2kwj_A Zinc finger protein DPF 97.2 0.0001 3.5E-09 51.8 1.6 38 120-157 20-59 (114)
66 2lbm_A Transcriptional regulat 96.8 6.3E-05 2.2E-09 54.9 -2.6 51 106-160 61-118 (142)
67 3ql9_A Transcriptional regulat 96.2 0.00025 8.6E-09 50.8 -2.5 51 107-161 56-113 (129)
68 1wil_A KIAA1045 protein; ring 90.4 0.01 3.5E-07 39.0 -3.4 50 107-158 14-75 (89)
69 1weq_A PHD finger protein 7; s 86.9 0.45 1.6E-05 31.2 2.8 48 107-158 25-78 (85)
70 2l7p_A Histone-lysine N-methyl 86.1 0.41 1.4E-05 32.4 2.3 37 117-155 22-58 (100)
71 2d8s_A Cellular modulator of i 85.6 0.36 1.2E-05 31.2 1.8 55 107-164 14-72 (80)
72 1iym_A EL5; ring-H2 finger, ub 85.0 0.25 8.7E-06 28.8 0.7 46 109-159 6-52 (55)
73 2pv0_B DNA (cytosine-5)-methyl 81.1 0.082 2.8E-06 44.4 -3.5 53 105-161 90-150 (386)
74 3a1b_A DNA (cytosine-5)-methyl 78.8 0.1 3.6E-06 38.4 -3.2 53 105-161 76-136 (159)
75 2lq6_A Bromodomain-containing 77.7 0.74 2.5E-05 30.3 1.0 32 105-138 14-48 (87)
76 2ecm_A Ring finger and CHY zin 76.1 0.48 1.7E-05 27.5 -0.2 46 110-160 7-53 (55)
77 2e61_A Zinc finger CW-type PWW 76.0 2 7E-05 26.9 2.7 34 118-154 13-48 (69)
78 2ect_A Ring finger protein 126 74.4 3.5 0.00012 25.5 3.6 50 107-162 14-64 (78)
79 3zzs_A Transcription attenuati 70.1 7 0.00024 23.8 3.9 47 28-74 13-59 (65)
80 1gtf_A Trp RNA-binding attenua 68.7 9.3 0.00032 23.7 4.3 47 28-74 17-63 (74)
81 1v87_A Deltex protein 2; ring- 67.6 1.2 4.1E-05 30.1 0.2 41 123-163 55-95 (114)
82 3zte_A Tryptophan operon RNA-b 67.4 9.9 0.00034 24.0 4.3 47 28-74 21-67 (78)
83 2ep4_A Ring finger protein 24; 66.3 2 6.8E-05 26.5 1.0 49 107-161 14-63 (74)
84 1v5n_A PDI-like hypothetical p 53.3 2.6 8.9E-05 27.6 -0.2 33 110-144 49-82 (89)
85 1zbd_B Rabphilin-3A; G protein 51.2 3.7 0.00013 29.1 0.3 62 107-169 54-118 (134)
86 2l0b_A E3 ubiquitin-protein li 48.0 1.8 6.3E-05 28.1 -1.6 49 107-161 39-88 (91)
87 1faq_A RAF-1; transferase, ser 46.7 11 0.00039 21.4 2.0 31 107-140 13-44 (52)
88 3nw0_A Non-structural maintena 46.5 2.6 8.8E-05 32.9 -1.2 46 108-159 180-226 (238)
89 4rxn_A Rubredoxin; electron tr 45.8 13 0.00044 22.0 2.1 13 148-160 34-46 (54)
90 1x4j_A Ring finger protein 38; 44.9 3.3 0.00011 25.6 -0.7 49 107-161 22-71 (75)
91 2kiz_A E3 ubiquitin-protein li 43.1 5.2 0.00018 24.1 0.1 48 108-161 14-62 (69)
92 6rxn_A Rubredoxin; electron tr 42.0 11 0.00037 21.6 1.3 35 124-160 5-40 (46)
93 2cr8_A MDM4 protein; ZF-ranbp 39.8 31 0.0011 20.1 3.0 28 149-176 10-46 (53)
94 4gne_A Histone-lysine N-methyl 38.8 21 0.00071 24.2 2.6 29 124-153 70-98 (107)
95 1yk4_A Rubredoxin, RD; electro 35.8 38 0.0013 19.7 3.1 13 148-160 33-45 (52)
96 2ct0_A Non-SMC element 1 homol 35.1 7.9 0.00027 24.4 -0.0 47 108-160 15-62 (74)
97 4a0k_B E3 ubiquitin-protein li 34.8 10 0.00035 26.1 0.5 30 127-161 82-111 (117)
98 1e8j_A Rubredoxin; iron-sulfur 34.2 37 0.0013 19.7 2.9 13 148-160 34-46 (52)
99 1s24_A Rubredoxin 2; electron 32.3 39 0.0013 22.0 3.0 40 121-161 33-79 (87)
100 2ct2_A Tripartite motif protei 32.2 7.1 0.00024 24.5 -0.7 52 107-161 14-67 (88)
101 2ecl_A Ring-box protein 2; RNF 31.0 1.6 5.3E-05 27.8 -4.0 36 121-161 40-75 (81)
102 2yuu_A NPKC-delta, protein kin 30.8 30 0.001 21.9 2.2 34 107-140 27-62 (83)
103 3k1l_B Fancl; UBC, ring, RWD, 30.5 9.4 0.00032 31.7 -0.3 54 108-161 308-372 (381)
104 2fnf_X Putative RAS effector N 28.7 25 0.00085 21.8 1.5 31 107-139 34-65 (72)
105 2vrw_B P95VAV, VAV1, proto-onc 28.4 24 0.00081 29.0 1.8 35 105-139 354-390 (406)
106 2l9z_A PR domain zinc finger p 27.4 18 0.00062 19.8 0.6 20 120-139 8-27 (39)
107 3mjh_B Early endosome antigen 26.8 23 0.00079 18.8 0.9 13 149-161 4-16 (34)
108 2a20_A Regulating synaptic mem 26.6 17 0.00058 22.0 0.4 51 110-161 11-62 (62)
109 2v3b_B Rubredoxin 2, rubredoxi 26.5 69 0.0024 18.7 3.2 14 148-161 34-47 (55)
110 1vd4_A Transcription initiatio 25.4 29 0.00098 20.0 1.3 42 120-163 11-52 (62)
111 1dx8_A Rubredoxin; electron tr 24.9 72 0.0025 19.7 3.2 14 148-161 38-51 (70)
112 4b6d_A RAC GTPase-activating p 24.6 30 0.001 20.7 1.3 32 108-139 19-51 (61)
113 4hae_A CDY-like 2, chromodomai 23.8 1.2E+02 0.0043 19.0 4.3 32 5-36 19-50 (81)
114 2lk0_A RNA-binding protein 5; 23.3 38 0.0013 17.4 1.4 14 148-161 3-16 (32)
115 3vhs_A ATPase wrnip1; zinc fin 22.1 52 0.0018 16.2 1.6 13 121-133 4-16 (29)
116 2jwo_A RAG-2, V(D)J recombinat 22.0 52 0.0018 20.8 2.0 34 122-155 37-75 (82)
117 1ovx_A ATP-dependent CLP prote 21.6 32 0.0011 21.3 1.0 13 149-161 39-51 (67)
118 2db6_A SH3 and cysteine rich d 21.2 48 0.0016 20.4 1.8 32 107-139 27-61 (74)
119 2m0d_A Zinc finger and BTB dom 20.7 49 0.0017 14.7 1.5 11 124-134 4-14 (30)
120 2e2z_A TIM15; protein import, 20.1 48 0.0016 22.1 1.7 18 116-133 31-48 (100)
121 1joc_A EEA1, early endosomal a 20.0 39 0.0013 23.3 1.3 57 102-158 63-121 (125)
No 1
>1w4s_A Polybromo, polybromo 1 protein; BAH, bromo-associated homology domain, chromatin remodelling, PBAF, SWI/SNF-B, RSC, nuclear protein; 1.55A {Gallus gallus}
Probab=99.93 E-value=2.2e-26 Score=176.08 Aligned_cols=104 Identities=30% Similarity=0.472 Sum_probs=91.8
Q ss_pred CCCCCCCCCeEEEEeEEeecCCCCEEEEEEEEeccccccCcccccCCCCeeEeeCCcceeeeceeeeeeEEEeeeccccc
Q 029867 2 RPADSDKPPYVARVEKIEADHRNNVKVRVRWYYRPEESIGGRRQFHGAKELFLSDHYDVQSAHTIEGKCTVHTFKNYTKL 81 (186)
Q Consensus 2 ~~~~~~~~~~iarI~~i~~~~~~~~~v~v~Wfyrp~d~~~~~~~~~~~~ELf~S~~~d~~~~~~I~gkc~V~~~~e~~~~ 81 (186)
.+++.+++||||+|++||++.+|+++|+|+|||||+||.++....+.++|||+|++.|++++++|.|||.|+++.+|.+.
T Consensus 36 ~~~~~~~~p~I~rI~~i~~~~~g~~~v~v~WfyRPeet~~~~~~~~~~~EvF~S~~~d~~~~~~I~gkC~V~~~~~~~~~ 115 (174)
T 1w4s_A 36 EPAEANLQPHIVCIERLWEDSAGEKWLYGCWFYRPNETFHLATRKFLEKEVFKSDYYNKVPVSKILGKCVVMFVKEYFKL 115 (174)
T ss_dssp CCSSTTSCCEEEEEEEEEECTTCCEEEEEEEEECGGGSCCCTTCEEETTEEEEEEEEEEEEGGGEEEEEEEEEHHHHTTE
T ss_pred eCCCCCCCCEEEEEEEEEEcCCCCEEEEEEEecCHHHcccccCCcCCCCeeEEeCCcceecHHHeeeeEEEEECchhhhc
Confidence 45665678999999999999899999999999999999987666667999999999999999999999999999999766
Q ss_pred cc---cCCcceeEeeeeccccCcccCC
Q 029867 82 EN---VGAEDYFCRFEYKAATGGFTPD 105 (186)
Q Consensus 82 ~~---~~~~~ffcr~~Yd~~~~~f~p~ 105 (186)
.+ ...++|||++.||..++.|.+.
T Consensus 116 ~p~~~~~~dvF~c~~~Yd~~~~~f~~i 142 (174)
T 1w4s_A 116 CPENFRDEDVYVCESRYSAKTKSFKKI 142 (174)
T ss_dssp EETTCCGGGEEEEEEEEETTTTEEEEC
T ss_pred CcCCCCCCCEEEEeEEEccccCeEccC
Confidence 43 2457799999999999999853
No 2
>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A*
Probab=99.82 E-value=1.9e-20 Score=174.08 Aligned_cols=101 Identities=27% Similarity=0.422 Sum_probs=87.6
Q ss_pred CCCCCCCCCCeEEEEeEEeecCCCCEEEEEEEEeccccccCcccccCCCCeeEeeCCcceeeeceeeeeeEEEeeec---
Q 029867 1 MRPADSDKPPYVARVEKIEADHRNNVKVRVRWYYRPEESIGGRRQFHGAKELFLSDHYDVQSAHTIEGKCTVHTFKN--- 77 (186)
Q Consensus 1 ~~~~~~~~~~~iarI~~i~~~~~~~~~v~v~Wfyrp~d~~~~~~~~~~~~ELf~S~~~d~~~~~~I~gkc~V~~~~e--- 77 (186)
|.+++++.+||||+|++||++.+|+++|+|+|||||+||.+++. ++++|||+|+++|++++++|.|||.|+++..
T Consensus 167 v~~~d~~~ppyIarIe~m~ed~~g~k~~~v~Wf~rp~ET~lg~~--~~~~ElFlsd~cd~~~l~~I~gkc~V~~~~~~~~ 244 (1002)
T 3swr_A 167 VIPDDSSKPLYLARVTALWEDSSNGQMFHAHWFCAGTDTVLGAT--SDPLELFLVDECEDMQLSYIHSKVKVIYKAPSEN 244 (1002)
T ss_dssp ECBSSTTSCCEEEEEEEEEEETTTEEEEEEEEEEEGGGSTTGGG--SCTTEEEEEEEEEEEEGGGEEEEECEEECCCCTT
T ss_pred EecCCCCCCceEEEEEEEeecCCCCeEEEEEEEecchhcccccC--CCCCceEeeccccCCcHHHhceeeEEEEccCCcc
Confidence 35677788899999999999998999999999999999999977 7899999999999999999999999998655
Q ss_pred ccc---------ccccCCcceeEeeeeccccCccc
Q 029867 78 YTK---------LENVGAEDYFCRFEYKAATGGFT 103 (186)
Q Consensus 78 ~~~---------~~~~~~~~ffcr~~Yd~~~~~f~ 103 (186)
+.. ......++|||++.|+..++.|.
T Consensus 245 w~~~~~~~~~~~~~~~~~~~ffc~~~Y~~~~~~F~ 279 (1002)
T 3swr_A 245 WAMEGGMDPESLLEGDDGKTYFYQLWYDQDYARFE 279 (1002)
T ss_dssp GGGCTTCCCCCSCCCCCCTSEEEEEEEETTTTEEE
T ss_pred hhhhcccccccccccCCCCeEEEEEEECCCCCccc
Confidence 111 11124679999999999999997
No 3
>3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A*
Probab=99.80 E-value=1e-19 Score=172.81 Aligned_cols=100 Identities=23% Similarity=0.377 Sum_probs=84.8
Q ss_pred CCCCCCCCCeEEEEeEEeecCCCCEEEEEEEEeccccccCcccccCCCCeeEeeCCcceeeeceeeeeeEEEeeec---c
Q 029867 2 RPADSDKPPYVARVEKIEADHRNNVKVRVRWYYRPEESIGGRRQFHGAKELFLSDHYDVQSAHTIEGKCTVHTFKN---Y 78 (186)
Q Consensus 2 ~~~~~~~~~~iarI~~i~~~~~~~~~v~v~Wfyrp~d~~~~~~~~~~~~ELf~S~~~d~~~~~~I~gkc~V~~~~e---~ 78 (186)
.+++++.++|||+|++||++.+|.++|+|+|||||+||.+++. ++++|||+|+|+|++++++|.|||.|+++.+ |
T Consensus 479 ~~~d~~~p~yiarIe~iwe~~dg~~~~~~~WfyRp~ETvlg~~--~~~rElFlS~~~d~~~l~~I~gKC~V~~~~~~~~~ 556 (1330)
T 3av4_A 479 IPDDSSKPLYLARVTALWEDKNGQMMFHAHWFCAGTDTVLGAT--SDPLELFLVGECENMQLSYIHSKVKVIYKAPSENW 556 (1330)
T ss_dssp CBCCSSCCCEEEEEEEEEEETTCCEEEEEEEEEEGGGSTTGGG--SCTTEEEEEEEEEEEEGGGEEEEECEEECCCCTTS
T ss_pred eCCCCCCCCEEEEEeeeeecCCCCEEEEEEEEEchHHcccccc--cCCCeEEEecccccCcHHHhcceeEEEEeccchhh
Confidence 4566667899999999999999999999999999999998874 7899999999999999999999999999766 3
Q ss_pred cccc----------ccCCcceeEeeeeccccCccc
Q 029867 79 TKLE----------NVGAEDYFCRFEYKAATGGFT 103 (186)
Q Consensus 79 ~~~~----------~~~~~~ffcr~~Yd~~~~~f~ 103 (186)
.++. ....++|||++.|+..++.|.
T Consensus 557 ~~~~~~~~~~~~~~~~~~~~F~C~~~Yd~~~~~F~ 591 (1330)
T 3av4_A 557 AMEGGTDPETTLPGAEDGKTYFFQLWYNQEYARFE 591 (1330)
T ss_dssp TTCCC-------------CCEEEEEEEETTTTEEE
T ss_pred hhhcccCccccccccccCCceEEEeEECCccCccC
Confidence 2211 134568999999999999986
No 4
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=99.79 E-value=3e-20 Score=124.30 Aligned_cols=63 Identities=40% Similarity=0.942 Sum_probs=58.0
Q ss_pred cCcccCCCcceEEecCCCCCCCCceEeCCCCCceecCCCCCCChhhhcCCCeEEcccCccccc
Q 029867 99 TGGFTPDRVAVYCKCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDCSSDVD 161 (186)
Q Consensus 99 ~~~f~p~~~~~~C~C~~~~~~~~~~i~C~~C~~W~H~~Cv~~~~~~~~~~~~~~C~~C~~~~~ 161 (186)
++.|+++.+.++|+|+++++++++|||||.|++|||..||+++...+..++.|+|+.|....+
T Consensus 3 ~~~~~~~~~~~~C~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~~ 65 (79)
T 1wep_A 3 SGSSGMALVPVYCLCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVFG 65 (79)
T ss_dssp SCCCCCCCCCCCSTTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTSC
T ss_pred CCccCccCCccEEEcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCcccccC
Confidence 567889999999999999988899999999999999999999998877678999999998765
No 5
>4dov_A ORC1, origin recognition complex subunit 1; DNA replication, replication; 1.70A {Mus musculus} PDB: 4dow_A*
Probab=99.78 E-value=2.1e-18 Score=128.23 Aligned_cols=100 Identities=25% Similarity=0.409 Sum_probs=81.3
Q ss_pred CCCCCCCCCeEEEEeEEeec---CCCCEEEEEEEEeccccccCccccc----CCCCeeEeeCCcc---eeeeceeeeeeE
Q 029867 2 RPADSDKPPYVARVEKIEAD---HRNNVKVRVRWYYRPEESIGGRRQF----HGAKELFLSDHYD---VQSAHTIEGKCT 71 (186)
Q Consensus 2 ~~~~~~~~~~iarI~~i~~~---~~~~~~v~v~Wfyrp~d~~~~~~~~----~~~~ELf~S~~~d---~~~~~~I~gkc~ 71 (186)
.++|. +.||||+|++|+++ ....+.++||||+||+|++.+...+ ++.+|||+++|.+ .+++++|.|+|.
T Consensus 48 ~~~D~-~~PyVAki~~lye~~~e~~~~k~A~VQWy~R~~EiP~~k~~l~g~~~~~qEIF~~d~~~~d~~I~aeTIi~~c~ 126 (163)
T 4dov_A 48 QGEDN-KKPYVAKLIELFQNGAEVPPKKCARVQWFVRFLEIPVSKRHLLGRSPPAQEIFWYDCSDWDNKINVETIIGPVQ 126 (163)
T ss_dssp CCSSS-SCCEEEEEEEEEEETTSSSCEEEEEEEEEEEGGGSCTTTGGGGCSCCCTTEEEEECCSCSCCEEEGGGEEEEEE
T ss_pred eCCcc-cCChhHHHHHHHhccccCCCceEEEEEeeechhhccccchhhccCCCCCCeEEEecCCCCcccccHHHeeeceE
Confidence 45554 66899999999885 3446899999999999999886654 4567999999885 789999999999
Q ss_pred EEeeeccccc--cccCCcceeEeeeeccccCcccC
Q 029867 72 VHTFKNYTKL--ENVGAEDYFCRFEYKAATGGFTP 104 (186)
Q Consensus 72 V~~~~e~~~~--~~~~~~~ffcr~~Yd~~~~~f~p 104 (186)
|+.++.+..+ .....++||.|..+|.+ .|.|
T Consensus 127 V~~~~~~e~~p~~~~~e~t~FvklsWd~k--~f~p 159 (163)
T 4dov_A 127 VVALAPEEVIPVDQKSEETLFVKLSWNKK--DFAP 159 (163)
T ss_dssp EEECCTTCCCCSSCCCCSEEEEEEEECSS--CEEE
T ss_pred EEEcCCccccCCCcccceEEEEEEEecCC--ccee
Confidence 9999888766 33468899999999965 5554
No 6
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=99.75 E-value=6.8e-20 Score=121.37 Aligned_cols=64 Identities=39% Similarity=0.976 Sum_probs=55.2
Q ss_pred CCcceEEecCCCCCCCCceEeCCCCCceecCCCCCCChhhhcCCCeEEcccCccccc---cccccCC
Q 029867 105 DRVAVYCKCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDCSSDVD---AKRSLNT 168 (186)
Q Consensus 105 ~~~~~~C~C~~~~~~~~~~i~C~~C~~W~H~~Cv~~~~~~~~~~~~~~C~~C~~~~~---~~~~~~~ 168 (186)
+.+.+||+|+++++++++|||||.|++|||+.|||++...+..++.|+|+.|....+ +++++|+
T Consensus 7 ~~~~~yCiC~~~~~~~~~MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~~~~~~~~k~k~~~ 73 (75)
T 3kqi_A 7 ATVPVYCVCRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEKTHGKSTLKKKRTW 73 (75)
T ss_dssp CCCCEETTTTEECCTTSCEEECTTTCCEEEHHHHTCCTTTGGGBSSCCCHHHHHHHCCCCBCSCCCC
T ss_pred CCCeeEEECCCcCCCCCCEEEcCCCCCCEecccccccccccCCCCEEECCCCcccCCCCeEeecccc
Confidence 467899999999988899999999999999999999998877678999999998766 4444444
No 7
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=99.69 E-value=8.8e-18 Score=107.83 Aligned_cols=56 Identities=27% Similarity=0.771 Sum_probs=50.1
Q ss_pred CcceEE-ecCCCCCCCCceEeCCCCCceecCCCCCCChhhhcCCCeEEcccCccccc
Q 029867 106 RVAVYC-KCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDCSSDVD 161 (186)
Q Consensus 106 ~~~~~C-~C~~~~~~~~~~i~C~~C~~W~H~~Cv~~~~~~~~~~~~~~C~~C~~~~~ 161 (186)
.+..+| +|+++++++++|||||.|++|||..|||++...+..++.|+|+.|..+..
T Consensus 4 ~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k~~ 60 (64)
T 1we9_A 4 GSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNKSG 60 (64)
T ss_dssp SSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTTTC
T ss_pred CCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCcCC
Confidence 467899 99999988899999999999999999999998776678999999987543
No 8
>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A*
Probab=99.69 E-value=6.1e-17 Score=150.68 Aligned_cols=98 Identities=23% Similarity=0.442 Sum_probs=83.8
Q ss_pred CCCCCeEEEEeEEeecCCCC-------EEEEEEEEeccccccCcc--cccCCCCeeEeeCCcceeeeceeeeeeEEEeee
Q 029867 6 SDKPPYVARVEKIEADHRNN-------VKVRVRWYYRPEESIGGR--RQFHGAKELFLSDHYDVQSAHTIEGKCTVHTFK 76 (186)
Q Consensus 6 ~~~~~~iarI~~i~~~~~~~-------~~v~v~Wfyrp~d~~~~~--~~~~~~~ELf~S~~~d~~~~~~I~gkc~V~~~~ 76 (186)
++.|++||+|++|+....+. .+|+|+|||||+||.++. ....+.+|||+|++.+++++++|.|||.|++.+
T Consensus 389 ~~~P~~IgrI~~i~~~~~~~~~~~~~~~~v~v~~fyRPed~~~~~~~~~~~D~~elf~S~~~~~~~~~~i~GkC~V~~~~ 468 (1002)
T 3swr_A 389 APEPYRIGRIKEIFCPKKSNGRPNETDIKIRVNKFYRPENTHKSTPASYHADINLLYWSDEEAVVDFKAVQGRCTVEYGE 468 (1002)
T ss_dssp CCCCCEEEEEEEEEECCCSSSSCCSSCCEEEEEECBCGGGSTTCGGGGSSSCTTEEEECCCEEEEEGGGCCEEEEEEEGG
T ss_pred CCCCceeeEEeEEEecCCccccCCCccEEEEEEEEECcccccccccccccCCcceEEEecceeccCHHHcceEEEEEEec
Confidence 56789999999999866544 999999999999997543 234588999999999999999999999999999
Q ss_pred ccccccc----cCCcceeEeeeeccccCccc
Q 029867 77 NYTKLEN----VGAEDYFCRFEYKAATGGFT 103 (186)
Q Consensus 77 e~~~~~~----~~~~~ffcr~~Yd~~~~~f~ 103 (186)
++..... .+++.||+...||..++.|.
T Consensus 469 d~~~~~~~~~~~~p~~fyf~~~Yd~~~~~f~ 499 (1002)
T 3swr_A 469 DLPECVQVYSMGGPNRFYFLEAYNAKSKSFE 499 (1002)
T ss_dssp GCSSCHHHHHHTSSSEEEEEEEEETTTTEEE
T ss_pred cccccchhhccCCCCeEEEEEEEeCCCCeee
Confidence 9875433 35689999999999999997
No 9
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=99.62 E-value=8e-17 Score=99.10 Aligned_cols=49 Identities=29% Similarity=0.815 Sum_probs=43.4
Q ss_pred cceEEecCCCCCCCCceEeCCCCCceecCCCCCCChhhhcCCCeEEcccCcc
Q 029867 107 VAVYCKCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDCSS 158 (186)
Q Consensus 107 ~~~~C~C~~~~~~~~~~i~C~~C~~W~H~~Cv~~~~~~~~~~~~~~C~~C~~ 158 (186)
..++|+|+++++ +++|||||.|++|||+.|||++..++ .+.|+|+.|..
T Consensus 3 d~~~C~C~~~~~-~~~MI~Cd~C~~W~H~~Cvgi~~~~~--~~~~~C~~C~~ 51 (52)
T 3o7a_A 3 DLVTCFCMKPFA-GRPMIECNECHTWIHLSCAKIRKSNV--PEVFVCQKCRD 51 (52)
T ss_dssp TCBCSTTCCBCT-TCCEEECTTTCCEEETTTTTCCGGGC--CSSCCCHHHHT
T ss_pred cCeEEEeCCcCC-CCCEEEcCCCCccccccccCCCcccC--CCcEECcCCCC
Confidence 467999999986 78999999999999999999998754 37999999975
No 10
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=99.61 E-value=1.5e-16 Score=103.02 Aligned_cols=53 Identities=26% Similarity=0.716 Sum_probs=45.9
Q ss_pred CCCcceEEecCCCCCCCCceEeCCCCCceecCCCCCCChhhhcCCCeEEcccCccc
Q 029867 104 PDRVAVYCKCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDCSSD 159 (186)
Q Consensus 104 p~~~~~~C~C~~~~~~~~~~i~C~~C~~W~H~~Cv~~~~~~~~~~~~~~C~~C~~~ 159 (186)
.+...++|+|+++++ +++|||||.|++|||++|||++...+ .+.|+|+.|...
T Consensus 15 ~~~~~~~CiC~~~~~-~~~MIqCd~C~~WfH~~Cvgi~~~~~--~~~~~C~~C~~s 67 (68)
T 3o70_A 15 YFQGLVTCFCMKPFA-GRPMIECNECHTWIHLSCAKIRKSNV--PEVFVCQKCRDS 67 (68)
T ss_dssp TTTTCCCSTTCCCCT-TCCEEECTTTCCEEETTTTTCCTTSC--CSSCCCHHHHTC
T ss_pred CCCCceEeECCCcCC-CCCEEECCCCCccccccccCcCcccC--CCcEECCCCCCC
Confidence 345789999999986 78999999999999999999998754 379999999754
No 11
>4ft4_B DNA (cytosine-5)-methyltransferase 1; chromodomain, BAH domain, DNA methyltransferase domain, H3K9 binding, methylation, transferase; HET: DNA MLY SAH; 2.70A {Zea mays} PDB: 4ft2_A* 4fsx_A*
Probab=99.60 E-value=1.1e-15 Score=139.96 Aligned_cols=98 Identities=16% Similarity=0.358 Sum_probs=82.4
Q ss_pred CCCCCeEEEEeEEeecCCCCEEEEEEEEeccccccCcc-------cccCCCCeeEeeCCcceeeeceeeeeeEEEeeecc
Q 029867 6 SDKPPYVARVEKIEADHRNNVKVRVRWYYRPEESIGGR-------RQFHGAKELFLSDHYDVQSAHTIEGKCTVHTFKNY 78 (186)
Q Consensus 6 ~~~~~~iarI~~i~~~~~~~~~v~v~Wfyrp~d~~~~~-------~~~~~~~ELf~S~~~d~~~~~~I~gkc~V~~~~e~ 78 (186)
++.++|||+|++|++..+|..+++|+|||||+||..+. ...++.+|||+|++.+++++++|.|||.|++....
T Consensus 70 ~~~~~~i~~i~~~~~~~~~~~~~~~~~~~r~~d~~~~~~~~~~~~~~~~d~~~~~~s~~~~~~~~~~i~~k~~v~~~~~~ 149 (784)
T 4ft4_B 70 ENEADYIGRITEFFEGTDQCHYFTCRWFFRAEDTVINSLVSISVDGHKHDPRRVFLSEEKNDNVLDCIISKVKIVHVDPN 149 (784)
T ss_dssp TTSCCEEEEEEEEEEETTSCEEEEEEEEEEGGGSTTGGGGGCCBTTBCCCTTBEEEEEEEEEEEGGGEEEECCEEECCTT
T ss_pred CCCCCEEEEEEEEEEcCCCCEEEEEEEeeChhhhcccccccccccccccccceEEEeCcEEEechHHeeeeEEEEeeCcc
Confidence 46789999999999999999999999999999998653 23568999999999999999999999999987765
Q ss_pred ccccc----cCCcceeEeeeeccccCccc
Q 029867 79 TKLEN----VGAEDYFCRFEYKAATGGFT 103 (186)
Q Consensus 79 ~~~~~----~~~~~ffcr~~Yd~~~~~f~ 103 (186)
.+... ....+|||++.|......|.
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~y~~~~~~~~ 178 (784)
T 4ft4_B 150 MDPKAKAQLIESCDLYYDMSYSVAYSTFA 178 (784)
T ss_dssp SCHHHHHHHHHHCSEEESEEEETGGGEEE
T ss_pred ccchhhhhccCCcceEeccccCccccCcc
Confidence 43322 24567999999988877775
No 12
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=99.60 E-value=1.6e-16 Score=104.20 Aligned_cols=56 Identities=32% Similarity=0.758 Sum_probs=47.9
Q ss_pred CCcceEEecCCCCCCCCceEeCCCCCceecCCCCCCChhhhcCCCeEEcccCccccc
Q 029867 105 DRVAVYCKCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDCSSDVD 161 (186)
Q Consensus 105 ~~~~~~C~C~~~~~~~~~~i~C~~C~~W~H~~Cv~~~~~~~~~~~~~~C~~C~~~~~ 161 (186)
+.+.++|+|+++++.+.+|||||.|++|||..|||++...+. .+.|+|+.|..+..
T Consensus 13 ~~~~~~C~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~-~~~~~C~~C~~~~~ 68 (72)
T 1wee_A 13 DNWKVDCKCGTKDDDGERMLACDGCGVWHHTRCIGINNADAL-PSKFLCFRCIELSG 68 (72)
T ss_dssp CSSEECCTTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCC-CSCCCCHHHHHHCS
T ss_pred CCcceEeeCCCccCCCCcEEECCCCCCccCCeeeccCccccC-CCcEECCCccCCCC
Confidence 467899999999876779999999999999999999976443 47999999987543
No 13
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=99.59 E-value=4.2e-16 Score=95.83 Aligned_cols=47 Identities=34% Similarity=0.970 Sum_probs=41.5
Q ss_pred EEecCCCCCCCCceEeCC-CCCceecCCCCCCChhhhcCCCeEEcccCc
Q 029867 110 YCKCEMPYNPDDLMVQCE-GCKDWFHPSCMGMTIEEAKKLDHFLCSDCS 157 (186)
Q Consensus 110 ~C~C~~~~~~~~~~i~C~-~C~~W~H~~Cv~~~~~~~~~~~~~~C~~C~ 157 (186)
-|+|++|++++++||+|| .|++|||+.|||++...+.. +.|+|+.|.
T Consensus 5 cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~-~~~~C~~C~ 52 (52)
T 2kgg_A 5 AQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAEN-EDYICINCA 52 (52)
T ss_dssp CTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHH-SCCCCSCC-
T ss_pred CCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCC-CCEECCCCC
Confidence 368999998899999999 89999999999999887654 789999995
No 14
>3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A*
Probab=99.56 E-value=2.9e-15 Score=142.46 Aligned_cols=97 Identities=22% Similarity=0.434 Sum_probs=82.9
Q ss_pred CCCCeEEEEeEEeecCC------CCEEEEEEEEeccccccCcc--cccCCCCeeEeeCCcceeeeceeeeeeEEEeeecc
Q 029867 7 DKPPYVARVEKIEADHR------NNVKVRVRWYYRPEESIGGR--RQFHGAKELFLSDHYDVQSAHTIEGKCTVHTFKNY 78 (186)
Q Consensus 7 ~~~~~iarI~~i~~~~~------~~~~v~v~Wfyrp~d~~~~~--~~~~~~~ELf~S~~~d~~~~~~I~gkc~V~~~~e~ 78 (186)
+.|++||||.+||...+ +..+|+|+|||||+||.++. ...++.+|||+|++.++++++.|.|||.|+++.++
T Consensus 702 ~~Py~IgqI~eI~~~~~s~~~~~~~~~vrV~wFyRPedt~~~~~~~~~~D~nELf~S~~~~~vp~~~I~GKC~V~~~~d~ 781 (1330)
T 3av4_A 702 PEPYRIGRIKEIHCGKKKGKVNEADIKLRLYKFYRPENTHRSYNGSYHTDINMLYWSDEEAVVNFSDVQGRCTVEYGEDL 781 (1330)
T ss_dssp CCCCEEEEEEECCCCEETTEECSSCCEEEEEEEECTTTSTTGGGTTTTSCTTBCEEEEEEEEEEGGGCCEEEEEEESTTC
T ss_pred CCCceEEEEEEEEecCCccccCCCceEEEEEEeeChhhcccccccccccCcceEEeeccceecCHHHcCceEEEEecccc
Confidence 57789999999998654 56899999999999998763 23578999999999999999999999999999887
Q ss_pred ccc----cccCCcceeEeeeeccccCccc
Q 029867 79 TKL----ENVGAEDYFCRFEYKAATGGFT 103 (186)
Q Consensus 79 ~~~----~~~~~~~ffcr~~Yd~~~~~f~ 103 (186)
... ...+++.|||+..||..+++|.
T Consensus 782 ~~~i~~y~~~g~d~Fy~~~~Yd~~~k~~~ 810 (1330)
T 3av4_A 782 LESIQDYSQGGPDRFYFLEAYNSKTKNFE 810 (1330)
T ss_dssp SSCHHHHHHTSTTEEEESCEEETTTTEEE
T ss_pred cccccccccCCCCeEEEEEEecccCCeec
Confidence 653 1235789999999999998886
No 15
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=99.55 E-value=2.5e-16 Score=104.36 Aligned_cols=56 Identities=30% Similarity=0.946 Sum_probs=47.4
Q ss_pred CCcceEEecCCCCCCCCceEeCCCCCceecCCCCCCChhhhc----CCCeEEcccCccccc
Q 029867 105 DRVAVYCKCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEEAK----KLDHFLCSDCSSDVD 161 (186)
Q Consensus 105 ~~~~~~C~C~~~~~~~~~~i~C~~C~~W~H~~Cv~~~~~~~~----~~~~~~C~~C~~~~~ 161 (186)
+.+.++|+|+++++ +++|||||.|++|||+.|||++...+. ..+.|+|+.|....+
T Consensus 13 d~~~~~C~C~~~~~-~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~~ 72 (76)
T 1wem_A 13 DPNALYCICRQPHN-NRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTILSG 72 (76)
T ss_dssp CTTCCCSTTCCCCC-SSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHSC
T ss_pred CCCCCEEECCCccC-CCCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCccC
Confidence 44679999999986 679999999999999999999987643 236899999987654
No 16
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=99.54 E-value=5.5e-16 Score=103.19 Aligned_cols=55 Identities=27% Similarity=0.628 Sum_probs=47.3
Q ss_pred CcceEEecCCCCCCCCceEeCC--CCCceecCCCCCCChhhh----cCCCeEEcccCccccc
Q 029867 106 RVAVYCKCEMPYNPDDLMVQCE--GCKDWFHPSCMGMTIEEA----KKLDHFLCSDCSSDVD 161 (186)
Q Consensus 106 ~~~~~C~C~~~~~~~~~~i~C~--~C~~W~H~~Cv~~~~~~~----~~~~~~~C~~C~~~~~ 161 (186)
.+.++|+|+++. .+++||||| .|+.|||+.|||++...+ ..++.|+|+.|.....
T Consensus 14 ~~~~~CiC~~~~-~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~~~ 74 (78)
T 1wew_A 14 EIKVRCVCGNSL-ETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTSG 74 (78)
T ss_dssp CCCCCCSSCCCC-CCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCCS
T ss_pred CCCEEeECCCcC-CCCCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCcccC
Confidence 478899999995 478999999 999999999999998765 3457999999987654
No 17
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=99.52 E-value=2e-15 Score=97.83 Aligned_cols=54 Identities=28% Similarity=0.642 Sum_probs=44.2
Q ss_pred CcceEEecCCCCCCCCceEeCCC--CCceecCCCCCCChhhhcCC---CeEEcccCcccc
Q 029867 106 RVAVYCKCEMPYNPDDLMVQCEG--CKDWFHPSCMGMTIEEAKKL---DHFLCSDCSSDV 160 (186)
Q Consensus 106 ~~~~~C~C~~~~~~~~~~i~C~~--C~~W~H~~Cv~~~~~~~~~~---~~~~C~~C~~~~ 160 (186)
...++|+|+.+.+ +++||+||. |+.|||+.|||++..++... +.|+|+.|+..+
T Consensus 8 e~~v~C~C~~~~~-~g~mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~~r 66 (68)
T 2rsd_A 8 EAKVRCICSSTMV-NDSMIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCRLSR 66 (68)
T ss_dssp SCEECCTTCCCSC-CSCEEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHHHHH
T ss_pred CCCEEeECCCCcC-CCCEEEECCCCCCCeEchhhCCCCcccccccCCCCcEECcCccCcc
Confidence 3578999999865 679999995 99999999999987654432 589999998543
No 18
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=99.50 E-value=8.7e-16 Score=98.51 Aligned_cols=49 Identities=33% Similarity=0.697 Sum_probs=42.7
Q ss_pred EEecCCCCCCCCceEeCC-CCCceecCCCCCCChhhhcCCC-----eEEcccCcc
Q 029867 110 YCKCEMPYNPDDLMVQCE-GCKDWFHPSCMGMTIEEAKKLD-----HFLCSDCSS 158 (186)
Q Consensus 110 ~C~C~~~~~~~~~~i~C~-~C~~W~H~~Cv~~~~~~~~~~~-----~~~C~~C~~ 158 (186)
-++|++|++++.+||+|| .|++|||..|||++...++.+. .|+|+.|..
T Consensus 11 C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvglt~~~~~~l~~e~~~~w~C~~C~~ 65 (65)
T 2vpb_A 11 CGICTNEVNDDQDAILCEASCQKWFHRICTGMTETAYGLLTAEASAVWGCDTCMA 65 (65)
T ss_dssp CTTTCSBCCTTSCEEEBTTTTCCEEEHHHHTCCHHHHHHHHHCTTEEECCHHHHC
T ss_pred CccCCCccCCCCCeEecccCccccCchhccCCCHHHHHHhhccCCCcEECcCccC
Confidence 349999999999999999 9999999999999998665443 999999963
No 19
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=99.48 E-value=4.2e-15 Score=129.33 Aligned_cols=65 Identities=37% Similarity=0.912 Sum_probs=56.3
Q ss_pred cCCCcceEEecCCCCCCCCceEeCCCCCceecCCCCCCChhhhcCCCeEEcccCccccc---cccccC
Q 029867 103 TPDRVAVYCKCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDCSSDVD---AKRSLN 167 (186)
Q Consensus 103 ~p~~~~~~C~C~~~~~~~~~~i~C~~C~~W~H~~Cv~~~~~~~~~~~~~~C~~C~~~~~---~~~~~~ 167 (186)
.++....+|+|+++++++++|||||.|++|||+.|||++...+..++.|+|+.|...++ .+++++
T Consensus 32 ~~~~~~~yC~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~~~~~~k~~~~ 99 (488)
T 3kv5_D 32 PPPPPPVYCVCRQPYDVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNCAVLHGSSLMKKRRN 99 (488)
T ss_dssp CCCCCCEETTTTEECCTTSCEEEBTTTCCEEEHHHHTCCGGGGGGEEEBCCHHHHHHHCSCEECCCCC
T ss_pred cCCCCCeEEeCCCcCCCCCCeEEccCCCCceeeeecCcCcccccCCCEEECCCCcCCcCcchhccccc
Confidence 45678999999999988999999999999999999999998877678999999998766 444444
No 20
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=99.47 E-value=4.8e-15 Score=103.95 Aligned_cols=50 Identities=32% Similarity=0.723 Sum_probs=44.3
Q ss_pred ecCCCCCCCCceEeCC-CCCceecCCCCCCChhhhcCC-----CeEEcccCccccc
Q 029867 112 KCEMPYNPDDLMVQCE-GCKDWFHPSCMGMTIEEAKKL-----DHFLCSDCSSDVD 161 (186)
Q Consensus 112 ~C~~~~~~~~~~i~C~-~C~~W~H~~Cv~~~~~~~~~~-----~~~~C~~C~~~~~ 161 (186)
+|++++++++.||+|| .|++|||+.|||++...++.+ ..|+|+.|.....
T Consensus 8 iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~~ 63 (105)
T 2xb1_A 8 ACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTKE 63 (105)
T ss_dssp TTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTTT
T ss_pred CCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcCC
Confidence 8999998889999998 999999999999998765444 7999999998765
No 21
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}
Probab=99.47 E-value=2.1e-15 Score=129.71 Aligned_cols=56 Identities=39% Similarity=1.041 Sum_probs=51.9
Q ss_pred CcceEEecCCCCCCCCceEeCCCCCceecCCCCCCChhhhcCCCeEEcccCccccc
Q 029867 106 RVAVYCKCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDCSSDVD 161 (186)
Q Consensus 106 ~~~~~C~C~~~~~~~~~~i~C~~C~~W~H~~Cv~~~~~~~~~~~~~~C~~C~~~~~ 161 (186)
.+.+||+|+++++++++|||||.|++|||++|||++...+..++.|+|+.|....+
T Consensus 3 ~~~~yCiC~~~~d~~~~MIqCD~C~~WfH~~CVgi~~~~~~~~~~y~C~~C~~~~~ 58 (447)
T 3kv4_A 3 SVPVYCLCRLPYDVTRFMIECDMCQDWFHGSCVGVEEEKAADIDLYHCPNCEVLHG 58 (447)
T ss_dssp CCCEETTTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTEEECCCHHHHHHHC
T ss_pred CCCeEEeCCCcCCCCCCeEEcCCCCcccccccCCcCcccccCCCEEECCCCccccC
Confidence 46899999999988999999999999999999999999887778999999998877
No 22
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=99.46 E-value=8.7e-15 Score=99.41 Aligned_cols=48 Identities=31% Similarity=0.814 Sum_probs=40.9
Q ss_pred CcceEEecCCCCCCCCceEeCCCCC---ceecCCCCCCChhhhcCCCeEEccc-Ccc
Q 029867 106 RVAVYCKCEMPYNPDDLMVQCEGCK---DWFHPSCMGMTIEEAKKLDHFLCSD-CSS 158 (186)
Q Consensus 106 ~~~~~C~C~~~~~~~~~~i~C~~C~---~W~H~~Cv~~~~~~~~~~~~~~C~~-C~~ 158 (186)
.+..||+|+++++ ++||+||.|+ +|||+.|||++..+. ..|+|+. |..
T Consensus 24 ~~~~yCiC~~~~~--g~MI~CD~c~C~~eWfH~~CVgl~~~p~---~~W~Cp~cC~~ 75 (90)
T 2jmi_A 24 QEEVYCFCRNVSY--GPMVACDNPACPFEWFHYGCVGLKQAPK---GKWYCSKDCKE 75 (90)
T ss_dssp CCSCCSTTTCCCS--SSEECCCSSSCSCSCEETTTSSCSSCTT---SCCCSSHHHHH
T ss_pred CCCcEEEeCCCCC--CCEEEecCCCCccccCcCccCCCCcCCC---CCccCChhhcc
Confidence 4688999999864 4799999977 999999999987653 6899999 874
No 23
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=99.45 E-value=2.8e-14 Score=93.06 Aligned_cols=51 Identities=29% Similarity=0.894 Sum_probs=42.8
Q ss_pred CcceEEecCCCCCCCCceEeCCC--CC-ceecCCCCCCChhhhcCCCeEEcccCccccc
Q 029867 106 RVAVYCKCEMPYNPDDLMVQCEG--CK-DWFHPSCMGMTIEEAKKLDHFLCSDCSSDVD 161 (186)
Q Consensus 106 ~~~~~C~C~~~~~~~~~~i~C~~--C~-~W~H~~Cv~~~~~~~~~~~~~~C~~C~~~~~ 161 (186)
....+|+|+++++ ++||+||. |. +|||+.|||++..+. ..|+|+.|.....
T Consensus 14 ~~~~~C~C~~~~~--g~MI~CD~~~C~~~wfH~~Cvgl~~~p~---g~w~Cp~C~~~~~ 67 (71)
T 1wen_A 14 NEPTYCLCHQVSY--GEMIGCDNPDCSIEWFHFACVGLTTKPR---GKWFCPRCSQESG 67 (71)
T ss_dssp TSCCCSTTCCCSC--SSEECCSCSSCSCCCEETTTTTCSSCCS---SCCCCTTTSSCSS
T ss_pred CCCCEEECCCCCC--CCEeEeeCCCCCCccEecccCCcCcCCC---CCEECCCCCcccc
Confidence 4688999999864 68999999 77 899999999987653 6799999987654
No 24
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.42 E-value=7.8e-15 Score=95.45 Aligned_cols=51 Identities=27% Similarity=0.748 Sum_probs=43.1
Q ss_pred CcceEEecCCCCCCCCceEeCCCCC---ceecCCCCCCChhhhcCCCeEEcccCccccc
Q 029867 106 RVAVYCKCEMPYNPDDLMVQCEGCK---DWFHPSCMGMTIEEAKKLDHFLCSDCSSDVD 161 (186)
Q Consensus 106 ~~~~~C~C~~~~~~~~~~i~C~~C~---~W~H~~Cv~~~~~~~~~~~~~~C~~C~~~~~ 161 (186)
.+.+||+|+++. +++||+||.|+ +|||+.|||++..+ ...|+|+.|.....
T Consensus 4 ~~~~yC~C~~~~--~g~MI~CD~cdC~~~WfH~~Cvgl~~~p---~~~w~Cp~C~~~~~ 57 (70)
T 1x4i_A 4 GSSGYCICNQVS--YGEMVGCDNQDCPIEWFHYGCVGLTEAP---KGKWYCPQCTAAMK 57 (70)
T ss_dssp SCCCCSTTSCCC--CSSEECCSCTTCSCCCEEHHHHTCSSCC---SSCCCCHHHHHHHH
T ss_pred CCCeEEEcCCCC--CCCEeEeCCCCCCccCCcccccccCcCC---CCCEECCCCCcccc
Confidence 467899999985 45999999974 99999999998853 37899999987765
No 25
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=99.41 E-value=1.7e-14 Score=90.83 Aligned_cols=49 Identities=27% Similarity=0.858 Sum_probs=41.1
Q ss_pred CcceEEecCCCCCCCCceEeCCC--CC-ceecCCCCCCChhhhcCCCeEEcccCccc
Q 029867 106 RVAVYCKCEMPYNPDDLMVQCEG--CK-DWFHPSCMGMTIEEAKKLDHFLCSDCSSD 159 (186)
Q Consensus 106 ~~~~~C~C~~~~~~~~~~i~C~~--C~-~W~H~~Cv~~~~~~~~~~~~~~C~~C~~~ 159 (186)
.+..+|+|++++ +++||+||. |. +|||+.|||++..+. ..|+|+.|..+
T Consensus 7 ~e~~yC~C~~~~--~g~mi~CD~~~C~~~wfH~~Cvgl~~~p~---~~w~Cp~C~~~ 58 (59)
T 3c6w_A 7 NEPTYCLCHQVS--YGEMIGCDNPDCPIEWFHFACVDLTTKPK---GKWFCPRCVQE 58 (59)
T ss_dssp -CCEETTTTEEC--CSEEEECSCTTCSSCEEETGGGTCSSCCS---SCCCCHHHHCC
T ss_pred CCCcEEECCCCC--CCCeeEeeCCCCCCCCEecccCCcccCCC---CCEECcCccCc
Confidence 468899999986 368999999 77 799999999987653 57999999764
No 26
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=99.41 E-value=1.2e-14 Score=110.63 Aligned_cols=56 Identities=30% Similarity=0.966 Sum_probs=50.1
Q ss_pred CcceEEecCCCCCCCCceEeCCCCCceecCCCCCCChhhhcCCCeEEcccCccccc
Q 029867 106 RVAVYCKCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDCSSDVD 161 (186)
Q Consensus 106 ~~~~~C~C~~~~~~~~~~i~C~~C~~W~H~~Cv~~~~~~~~~~~~~~C~~C~~~~~ 161 (186)
....+|+|+++++++++||+||.|.+|||..|||++...+...+.|+|+.|....+
T Consensus 6 ~~~~~C~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~~~ 61 (174)
T 2ri7_A 6 DTKLYCICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQSTED 61 (174)
T ss_dssp -CCEETTTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHHHH
T ss_pred CCCcEeeCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcchhc
Confidence 46789999999988899999999999999999999988776678999999998765
No 27
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=99.39 E-value=3.4e-14 Score=93.74 Aligned_cols=54 Identities=24% Similarity=0.841 Sum_probs=45.3
Q ss_pred CcceEE-ecCCCCCCCCceEeCCCCCceecCCCCCCChhhhcCCCeEEcccCccccc
Q 029867 106 RVAVYC-KCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDCSSDVD 161 (186)
Q Consensus 106 ~~~~~C-~C~~~~~~~~~~i~C~~C~~W~H~~Cv~~~~~~~~~~~~~~C~~C~~~~~ 161 (186)
....+| +|+++++ ++.||+||.|..|||+.||+++...+.. ..|+|+.|.....
T Consensus 16 ~~~~~C~~C~~~~~-~~~mi~CD~C~~wfH~~Cv~~~~~~~~~-~~w~C~~C~~~~~ 70 (75)
T 2k16_A 16 NQIWICPGCNKPDD-GSPMIGCDDCDDWYHWPCVGIMAAPPEE-MQWFCPKCANKIK 70 (75)
T ss_dssp CEEECBTTTTBCCS-SCCEEECSSSSSEEEHHHHTCSSCCCSS-SCCCCTTTHHHHC
T ss_pred CCCcCCCCCCCCCC-CCCEEEcCCCCcccccccCCCCccCCCC-CCEEChhccCchh
Confidence 356689 9999875 6799999999999999999998876543 6899999987654
No 28
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=99.38 E-value=3.6e-14 Score=90.15 Aligned_cols=49 Identities=31% Similarity=0.880 Sum_probs=40.6
Q ss_pred CcceEEecCCCCCCCCceEeCCC--CC-ceecCCCCCCChhhhcCCCeEEcccCccc
Q 029867 106 RVAVYCKCEMPYNPDDLMVQCEG--CK-DWFHPSCMGMTIEEAKKLDHFLCSDCSSD 159 (186)
Q Consensus 106 ~~~~~C~C~~~~~~~~~~i~C~~--C~-~W~H~~Cv~~~~~~~~~~~~~~C~~C~~~ 159 (186)
.+..||+|+++++ ++||+||. |. +|||+.|||++..+ ...|+|+.|...
T Consensus 9 ~e~~yC~C~~~~~--g~MI~CD~c~C~~~WfH~~Cvgl~~~p---~~~w~Cp~C~~~ 60 (62)
T 2g6q_A 9 NEPTYCLCNQVSY--GEMIGCDNEQCPIEWFHFSCVSLTYKP---KGKWYCPKCRGD 60 (62)
T ss_dssp -CCEETTTTEECC--SEEEECSCTTCSSCEEETGGGTCSSCC---SSCCCCHHHHTC
T ss_pred CCCcEEECCCCCC--CCeeeeeCCCCCcccEecccCCcCcCC---CCCEECcCcccC
Confidence 3688999999864 58999999 54 99999999998754 368999999764
No 29
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=99.38 E-value=9.6e-14 Score=94.45 Aligned_cols=51 Identities=29% Similarity=0.894 Sum_probs=42.6
Q ss_pred CcceEEecCCCCCCCCceEeCCC--CC-ceecCCCCCCChhhhcCCCeEEcccCccccc
Q 029867 106 RVAVYCKCEMPYNPDDLMVQCEG--CK-DWFHPSCMGMTIEEAKKLDHFLCSDCSSDVD 161 (186)
Q Consensus 106 ~~~~~C~C~~~~~~~~~~i~C~~--C~-~W~H~~Cv~~~~~~~~~~~~~~C~~C~~~~~ 161 (186)
....||+|+++++ ++||+||. |. +|||+.||+++..+. ..|+|+.|.....
T Consensus 34 ~e~~yCiC~~~~~--g~MI~CD~~dC~~~WfH~~CVgl~~~p~---g~W~Cp~C~~~~~ 87 (91)
T 1weu_A 34 NEPTYCLCHQVSY--GEMIGCDNPDCSIEWFHFACVGLTTKPR---GKWFCPRCSQESG 87 (91)
T ss_dssp CCCBCSTTCCBCC--SCCCCCSCSSCSCCCCCSTTTTCSSCCC---SSCCCTTTCCCCS
T ss_pred CCCcEEECCCCCC--CCEeEecCCCCCCCCEecccCCcCcCCC---CCEECcCccCcCC
Confidence 4678999999874 68999999 76 899999999987653 6799999986544
No 30
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=99.36 E-value=5.6e-14 Score=88.73 Aligned_cols=49 Identities=31% Similarity=0.937 Sum_probs=40.3
Q ss_pred CcceEEecCCCCCCCCceEeCCC--CC-ceecCCCCCCChhhhcCCCeEEcccCccc
Q 029867 106 RVAVYCKCEMPYNPDDLMVQCEG--CK-DWFHPSCMGMTIEEAKKLDHFLCSDCSSD 159 (186)
Q Consensus 106 ~~~~~C~C~~~~~~~~~~i~C~~--C~-~W~H~~Cv~~~~~~~~~~~~~~C~~C~~~ 159 (186)
.+..+|+|+++++ ++||+||. |. +|||+.|||++..+. ..|+|+.|..+
T Consensus 8 ~e~~~C~C~~~~~--g~mi~CD~cdC~~~wfH~~Cvgl~~~p~---g~w~C~~C~~~ 59 (60)
T 2vnf_A 8 NEPTYCLCHQVSY--GEMIGCDNPDCSIEWFHFACVGLTTKPR---GKWFCPRCSQE 59 (60)
T ss_dssp -CCEETTTTEECC--SEEEECSCTTCSSCEEETGGGTCSSCCS---SCCCCHHHHC-
T ss_pred CCCCEEECCCcCC--CCEEEeCCCCCCCceEehhcCCCCcCCC---CCEECcCccCc
Confidence 3688999999864 68999999 65 899999999887653 67999999764
No 31
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=99.35 E-value=3.6e-13 Score=93.23 Aligned_cols=52 Identities=29% Similarity=0.781 Sum_probs=43.8
Q ss_pred CcceEEecCCCCCCCCceEeCCCCCceecCCCCCCChhhhcCCCeEEcccCcccc
Q 029867 106 RVAVYCKCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDCSSDV 160 (186)
Q Consensus 106 ~~~~~C~C~~~~~~~~~~i~C~~C~~W~H~~Cv~~~~~~~~~~~~~~C~~C~~~~ 160 (186)
...+.|+|+.+.+ ++.||+||.|..|||..||+++...+. +.|+|+.|..+.
T Consensus 26 ~d~vrCiC~~~~~-~~~mi~Cd~C~~w~H~~C~~~~~~~~p--~~w~C~~C~~~~ 77 (98)
T 2lv9_A 26 TDVTRCICGFTHD-DGYMICCDKCSVWQHIDCMGIDRQHIP--DTYLCERCQPRN 77 (98)
T ss_dssp CCBCCCTTSCCSC-SSCEEEBTTTCBEEETTTTTCCTTSCC--SSBCCTTTSSSC
T ss_pred CCCEEeECCCccC-CCcEEEcCCCCCcCcCcCCCCCccCCC--CCEECCCCcCCC
Confidence 3467899999875 789999999999999999999876543 579999997554
No 32
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=99.35 E-value=1.2e-13 Score=105.76 Aligned_cols=54 Identities=30% Similarity=0.789 Sum_probs=45.1
Q ss_pred ceEE-ecCCCCCCCCc---eEeCCCCCceecCCCCCCChhhhcCC------CeEEcccCccccc
Q 029867 108 AVYC-KCEMPYNPDDL---MVQCEGCKDWFHPSCMGMTIEEAKKL------DHFLCSDCSSDVD 161 (186)
Q Consensus 108 ~~~C-~C~~~~~~~~~---~i~C~~C~~W~H~~Cv~~~~~~~~~~------~~~~C~~C~~~~~ 161 (186)
..+| +|+++|+++++ |||||.|+.|||+.|+|++.+.++.+ ..|+|+.|....+
T Consensus 2 G~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~~ 65 (183)
T 3lqh_A 2 GNFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERHP 65 (183)
T ss_dssp CCBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSSS
T ss_pred cCcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCCC
Confidence 3578 89999988765 99999999999999999998643332 3799999998766
No 33
>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*
Probab=99.27 E-value=1.2e-12 Score=113.62 Aligned_cols=56 Identities=20% Similarity=0.533 Sum_probs=47.8
Q ss_pred CCCCCCceEeCCCCCceecCCCCCCChhhhcCCCeEEcccCccccc---cccccCCCCC
Q 029867 116 PYNPDDLMVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDCSSDVD---AKRSLNTFSV 171 (186)
Q Consensus 116 ~~~~~~~~i~C~~C~~W~H~~Cv~~~~~~~~~~~~~~C~~C~~~~~---~~~~~~~~~~ 171 (186)
+.+++.+||+||.|+.|||+.|||++...+..++.|+||.|....+ +|++.+++..
T Consensus 51 ~~n~~~~mI~CD~C~~WfH~~CVgi~~~~a~~~~~y~Cp~C~~~~gps~~k~~~~~~r~ 109 (528)
T 3pur_A 51 HKKNDFQWIGCDSCQTWYHFLCSGLEQFEYYLYEKFFCPKCVPHTGHSIRYKVVAPHRY 109 (528)
T ss_dssp TTTSTTSEEECTTTCCEEEGGGTTCCGGGTTTEEECCCTTTHHHHCSCEECCCCCTTSS
T ss_pred CCCcCCCEEECCCCCcCCCCcCCCCChhHhcCCCeEECcCCcCCCCCcceeeccCcccc
Confidence 3468999999999999999999999999888889999999998766 6666666543
No 34
>2fl7_A Regulatory protein SIR3; ORC, silencing, chromatin, transcription; 1.85A {Saccharomyces cerevisiae} PDB: 2fvu_A 3tu4_K*
Probab=99.03 E-value=4e-10 Score=88.42 Aligned_cols=98 Identities=16% Similarity=0.226 Sum_probs=72.9
Q ss_pred CCCCeEEEEeEEeecC-CCCEEEEEEEEeccccccC-------ccc--------cc--------CCCCeeEeeCCcceee
Q 029867 7 DKPPYVARVEKIEADH-RNNVKVRVRWYYRPEESIG-------GRR--------QF--------HGAKELFLSDHYDVQS 62 (186)
Q Consensus 7 ~~~~~iarI~~i~~~~-~~~~~v~v~Wfyrp~d~~~-------~~~--------~~--------~~~~ELf~S~~~d~~~ 62 (186)
.+.+.++.|.+|.-.. ++-.-+.|.||+|..|+.. ... .+ ...+|||+|.+.+.+-
T Consensus 66 ~~sysv~LI~eIrl~t~~n~vei~v~wylR~~Ei~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~nELflTa~l~eI~ 145 (232)
T 2fl7_A 66 TETYSVYLIHEIRLNTLNNVVEIWVFSYLRWFELKPKLYYEQFRPDLIKEDHPLEFYKDKFFNEVNKSELYLTAELSEIW 145 (232)
T ss_dssp TTEEEEEEEEEEEC-----CCEEEEEEEECGGGSCHHHHHHHHCHHHHHTTCCHHHHHHHHHHHSCTTEEEEEEEEEEEC
T ss_pred CCceEEEEEEEEEecCCCceEEEEEEEeecHHHcCchhhhhhcCchhcccccchhhhhhhhhcccccceEEEeccHHHHH
Confidence 3445666666665443 4468899999999999965 111 22 6899999999999999
Q ss_pred eceeeeeeEEEeeeccccc--cccCCcceeEeeeeccccCcccC
Q 029867 63 AHTIEGKCTVHTFKNYTKL--ENVGAEDYFCRFEYKAATGGFTP 104 (186)
Q Consensus 63 ~~~I~gkc~V~~~~e~~~~--~~~~~~~ffcr~~Yd~~~~~f~p 104 (186)
+..|+++|.|++.++|..+ ......+||||+.+++....|.+
T Consensus 146 l~diI~~anVls~~Ef~~l~~d~~~~~tFf~R~~cd~~~~~f~~ 189 (232)
T 2fl7_A 146 LKDFIAVGQILPESQWNDSSIDKIEDRDFLVRYACEPTAEKFVP 189 (232)
T ss_dssp GGGEEEECEEECTTTC-------CTTTEEEEEEECCTTSCSCEE
T ss_pred HHhhhhheEeccHHHHHHhcccccCCceEEEEEEEcCCcCcccc
Confidence 9999999999999999876 44567899999999997776763
No 35
>1m4z_A Origin recognition complex subunit 1; DNA replication, transcriptional silencing, chromatin, BAH D gene regulation; 2.20A {Saccharomyces cerevisiae} SCOP: b.34.12.1 PDB: 1zhi_A 1zbx_A
Probab=99.01 E-value=4.4e-10 Score=88.50 Aligned_cols=98 Identities=14% Similarity=0.137 Sum_probs=78.3
Q ss_pred CCCCeEEEEeEEeecC-CCCEEEEEEEEeccccccC-------ccc--------cc--------CCCCeeEeeCCcceee
Q 029867 7 DKPPYVARVEKIEADH-RNNVKVRVRWYYRPEESIG-------GRR--------QF--------HGAKELFLSDHYDVQS 62 (186)
Q Consensus 7 ~~~~~iarI~~i~~~~-~~~~~v~v~Wfyrp~d~~~-------~~~--------~~--------~~~~ELf~S~~~d~~~ 62 (186)
.+.+.++.|.+|.-.. ++-.-+.|.||+|..|+.. ... .+ ...+|||+|.+.+.+-
T Consensus 66 ~~sysv~LI~eIrl~t~~n~vei~v~wylR~~Ei~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~nELflTa~l~eI~ 145 (238)
T 1m4z_A 66 AGTYSVYMIQELRLNTLNNVVELWALTYLRWFEVNPLAHYRQFNPDANILNRPLNYYNKLFSETANKNELYLTAELAELQ 145 (238)
T ss_dssp TTEEEEEEEEEEEEETTTTEEEEEEEEEECGGGSCHHHHHHHHCHHHHHSCCCHHHHHHHHHHHSCTTEEEEEEEEEEEC
T ss_pred CCceEEEEEEEEEecCCCceEEEEEEEeecHHHcCchhhhhhcCchhcccccchhhhhhhhhcccccceEEEeccHHHHh
Confidence 3455667777776543 4568888999999999965 111 23 6899999999999999
Q ss_pred eceeeeeeEEEeeeccccc--cccCCcceeEeeeeccccCcccC
Q 029867 63 AHTIEGKCTVHTFKNYTKL--ENVGAEDYFCRFEYKAATGGFTP 104 (186)
Q Consensus 63 ~~~I~gkc~V~~~~e~~~~--~~~~~~~ffcr~~Yd~~~~~f~p 104 (186)
+..|+++|.|++.++|..+ ......+||||+.+++....|.+
T Consensus 146 l~diI~~anVls~~Ef~~i~~d~~~~~tFf~R~~cd~~~~~f~~ 189 (238)
T 1m4z_A 146 LFNFIRVANVMDGSKWEVLKGNVDPERDFTVRYICEPTGEKFVD 189 (238)
T ss_dssp GGGEEEEEEEECHHHHHHHGGGCCTTTEEEEEEECCTTSCCCEE
T ss_pred HHhhhhheEeccHHHHhhhccccccCceEEEEEEEcCCcCcccc
Confidence 9999999999999999876 44567899999999997777764
No 36
>3rsn_A SET1/ASH2 histone methyltransferase complex subun; PHD domain, winged helix domain, binding, transcription; 2.10A {Homo sapiens} PDB: 3s32_A
Probab=98.93 E-value=6.1e-10 Score=84.08 Aligned_cols=55 Identities=20% Similarity=0.372 Sum_probs=39.4
Q ss_pred CcceEEecCCCCCCCCceEeCCCCCceecCCCCCCChhhhcC---CCeEEcccCcccc
Q 029867 106 RVAVYCKCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEEAKK---LDHFLCSDCSSDV 160 (186)
Q Consensus 106 ~~~~~C~C~~~~~~~~~~i~C~~C~~W~H~~Cv~~~~~~~~~---~~~~~C~~C~~~~ 160 (186)
....||.|+++.+.+..|+||..|.+|||.+|++........ ...|+|..|....
T Consensus 3 ~~~~yCYCG~~~~~~~~mLqC~~C~qWFH~~Cl~~~~~~~lp~~~fY~F~C~~C~~~g 60 (177)
T 3rsn_A 3 TQAGSVDEENGRQLGEVELQCGICTKWFTADTFGIDTSSCLPFMTNYSFHCNVCHHSG 60 (177)
T ss_dssp --------CTTCCTTSCEEECTTTCCEEEGGGGTCCCTTCCTTCCSEEEECTTTSTTS
T ss_pred CeeeEEEcCCCCCCCceeEeeccccceecHHHhcccccCccccceeEEEEccccCCCC
Confidence 456799999999999999999999999999999866543322 3589999999754
No 37
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=98.79 E-value=7.7e-10 Score=67.24 Aligned_cols=46 Identities=24% Similarity=0.640 Sum_probs=36.7
Q ss_pred ecCCCCCCCCceEeCCCCCceecCCCCCCChhhhcCCCeEEcccCccc
Q 029867 112 KCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDCSSD 159 (186)
Q Consensus 112 ~C~~~~~~~~~~i~C~~C~~W~H~~Cv~~~~~~~~~~~~~~C~~C~~~ 159 (186)
+|++..+ ++.||.||.|..|||..|++++...... ..|+|+.|...
T Consensus 5 vC~~~~~-~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~-g~W~C~~C~~~ 50 (51)
T 1f62_A 5 VCRKKGE-DDKLILCDECNKAFHLFCLRPALYEVPD-GEWQCPACQPA 50 (51)
T ss_dssp TTCCSSC-CSCCEECTTTCCEECHHHHCTTCCSCCS-SCCSCTTTSCC
T ss_pred CCCCCCC-CCCEEECCCCChhhCcccCCCCcCCCCC-CcEECcCcccc
Confidence 6777654 6799999999999999999866554433 58999999754
No 38
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=98.73 E-value=3.6e-09 Score=67.65 Aligned_cols=56 Identities=25% Similarity=0.613 Sum_probs=42.1
Q ss_pred ceEE-ecCCCCC-CCCceEeCCCCCceecCCCCCCChhh--hcCCCeEEcccCccccccc
Q 029867 108 AVYC-KCEMPYN-PDDLMVQCEGCKDWFHPSCMGMTIEE--AKKLDHFLCSDCSSDVDAK 163 (186)
Q Consensus 108 ~~~C-~C~~~~~-~~~~~i~C~~C~~W~H~~Cv~~~~~~--~~~~~~~~C~~C~~~~~~~ 163 (186)
...| +|+.... .++.||.||.|..+||..|++++... ......|+|+.|......|
T Consensus 6 ~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~~~k 65 (66)
T 2yt5_A 6 SGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFATTTK 65 (66)
T ss_dssp CCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTTSCC
T ss_pred CCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCccccC
Confidence 4456 8887642 35899999999999999999986543 1123689999998776544
No 39
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.68 E-value=4.4e-09 Score=65.14 Aligned_cols=47 Identities=19% Similarity=0.716 Sum_probs=36.9
Q ss_pred cceEE-ecCCCCCCCCceEeCCCCCceecCCCCCCChhhhcCCCeEEcccCcc
Q 029867 107 VAVYC-KCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDCSS 158 (186)
Q Consensus 107 ~~~~C-~C~~~~~~~~~~i~C~~C~~W~H~~Cv~~~~~~~~~~~~~~C~~C~~ 158 (186)
...+| +|+.. +.||.||.|..|||..|++.+...... ..|+|+.|..
T Consensus 8 ~~~~C~vC~~~----g~ll~Cd~C~~~~H~~Cl~ppl~~~p~-g~W~C~~C~~ 55 (56)
T 2yql_A 8 HEDFCSVCRKS----GQLLMCDTCSRVYHLDCLDPPLKTIPK-GMWICPRCQD 55 (56)
T ss_dssp SCCSCSSSCCS----SCCEECSSSSCEECSSSSSSCCCSCCC-SSCCCHHHHC
T ss_pred CCCCCccCCCC----CeEEEcCCCCcceECccCCCCcCCCCC-CceEChhhhC
Confidence 34567 67763 589999999999999999976654433 6899999975
No 40
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=98.67 E-value=2.6e-09 Score=67.34 Aligned_cols=49 Identities=22% Similarity=0.714 Sum_probs=38.7
Q ss_pred CcceEE-ecCCCCCCCCceEeCCCCCceecCCCCCCChhhhcCCCeEEcccCccc
Q 029867 106 RVAVYC-KCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDCSSD 159 (186)
Q Consensus 106 ~~~~~C-~C~~~~~~~~~~i~C~~C~~W~H~~Cv~~~~~~~~~~~~~~C~~C~~~ 159 (186)
....+| +|+. ++.|+.||.|..|||..|++++...... ..|+|+.|...
T Consensus 9 ~~~~~C~vC~~----~g~ll~CD~C~~~fH~~Cl~p~l~~~p~-g~W~C~~C~~~ 58 (61)
T 2l5u_A 9 DHQDYCEVCQQ----GGEIILCDTCPRAYHMVCLDPDMEKAPE-GKWSCPHCEKE 58 (61)
T ss_dssp CCCSSCTTTSC----CSSEEECSSSSCEEEHHHHCTTCCSCCC-SSCCCTTGGGG
T ss_pred CCCCCCccCCC----CCcEEECCCCChhhhhhccCCCCCCCCC-CceECcccccc
Confidence 345677 5876 3689999999999999999987654433 68999999763
No 41
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=98.67 E-value=6.8e-09 Score=67.22 Aligned_cols=47 Identities=23% Similarity=0.610 Sum_probs=37.4
Q ss_pred ecCCCCCCCCceEeCCCCCceecCCCCCCChhhhcCCCeEEcccCccc
Q 029867 112 KCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDCSSD 159 (186)
Q Consensus 112 ~C~~~~~~~~~~i~C~~C~~W~H~~Cv~~~~~~~~~~~~~~C~~C~~~ 159 (186)
+|++..+ ++.||.||.|..+||..|++.+.......+.|+|+.|...
T Consensus 23 ~C~~~~~-~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~~ 69 (70)
T 3asl_A 23 LCGGRQD-PDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 69 (70)
T ss_dssp TTCCCSC-GGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSCC
T ss_pred CCCCcCC-CCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccCc
Confidence 5666543 6799999999999999999976665544348999999853
No 42
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.67 E-value=4.9e-09 Score=71.48 Aligned_cols=51 Identities=25% Similarity=0.630 Sum_probs=40.7
Q ss_pred ceEE-ecCCCCCCCCceEeCCCCCceecCCCCCCChhhhcCCCeEEcccCcccc
Q 029867 108 AVYC-KCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDCSSDV 160 (186)
Q Consensus 108 ~~~C-~C~~~~~~~~~~i~C~~C~~W~H~~Cv~~~~~~~~~~~~~~C~~C~~~~ 160 (186)
...| +|+...+ ...||.||.|..|||..|++++...... ..|+|+.|....
T Consensus 16 ~~~C~vC~~~~~-~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~-g~W~C~~C~~~~ 67 (92)
T 2e6r_A 16 SYICQVCSRGDE-DDKLLFCDGCDDNYHIFCLLPPLPEIPR-GIWRCPKCILAE 67 (92)
T ss_dssp CCCCSSSCCSGG-GGGCEECTTTCCEECSSSSSSCCSSCCS-SCCCCHHHHHHH
T ss_pred CCCCccCCCcCC-CCCEEEcCCCCchhccccCCCCcccCCC-CCcCCccCcCcc
Confidence 4457 8888754 5789999999999999999976654433 689999998754
No 43
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=98.66 E-value=2.8e-09 Score=66.96 Aligned_cols=49 Identities=18% Similarity=0.690 Sum_probs=38.0
Q ss_pred ceEE-ecCCCCCCCCceEeCCCCCceecCCCCCCChhhhcCCCeEEcccCccccc
Q 029867 108 AVYC-KCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDCSSDVD 161 (186)
Q Consensus 108 ~~~C-~C~~~~~~~~~~i~C~~C~~W~H~~Cv~~~~~~~~~~~~~~C~~C~~~~~ 161 (186)
..+| +|+.. +.||.||.|..|||..|++.+...... ..|+|+.|.....
T Consensus 5 ~~~C~vC~~~----g~ll~Cd~C~~~fH~~Cl~ppl~~~p~-g~W~C~~C~~~~~ 54 (60)
T 2puy_A 5 EDFCSVCRKS----GQLLMCDTCSRVYHLDCLDPPLKTIPK-GMWICPRCQDQML 54 (60)
T ss_dssp CSSCTTTCCC----SSCEECSSSSCEECGGGSSSCCSSCCC-SCCCCHHHHHHHH
T ss_pred CCCCcCCCCC----CcEEEcCCCCcCEECCcCCCCcCCCCC-CceEChhccChhh
Confidence 4456 67763 589999999999999999976654433 6899999986554
No 44
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=98.62 E-value=6.8e-09 Score=75.00 Aligned_cols=40 Identities=25% Similarity=0.680 Sum_probs=31.9
Q ss_pred ceEeCCCCCceecCCCCCCChh------hhcCCCeEEcccCccccc
Q 029867 122 LMVQCEGCKDWFHPSCMGMTIE------EAKKLDHFLCSDCSSDVD 161 (186)
Q Consensus 122 ~~i~C~~C~~W~H~~Cv~~~~~------~~~~~~~~~C~~C~~~~~ 161 (186)
.||+||.|++|||..|++++.. .......|.|+.|.....
T Consensus 1 ~mi~c~~c~~w~H~~c~~~~~~~~~~l~~lp~~~~~~c~~C~~~~~ 46 (140)
T 2ku7_A 1 SMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERHV 46 (140)
T ss_dssp CCCCCSCCSSCHHHHHCCCCHHHHHHHHSSCTTTTCCSSCCTTTSC
T ss_pred CccccccCCCccCCcccccCHHHHHHHhhccccceeeCcccccccc
Confidence 3999999999999999999874 222234799999987655
No 45
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=98.61 E-value=1.6e-08 Score=64.65 Aligned_cols=50 Identities=24% Similarity=0.596 Sum_probs=38.7
Q ss_pred cceEE-ecCCCCCCCCceEeCCCCCceecCCCCCCChhhhcCCCeEEcccCccccc
Q 029867 107 VAVYC-KCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDCSSDVD 161 (186)
Q Consensus 107 ~~~~C-~C~~~~~~~~~~i~C~~C~~W~H~~Cv~~~~~~~~~~~~~~C~~C~~~~~ 161 (186)
...+| +|+.. +.||.||.|..|||..|++++...... ..|+|+.|.....
T Consensus 7 ~~~~C~vC~~~----g~ll~CD~C~~~fH~~Cl~ppl~~~P~-g~W~C~~C~~~~~ 57 (66)
T 1xwh_A 7 NEDECAVCRDG----GELICCDGCPRAFHLACLSPPLREIPS-GTWRCSSCLQATV 57 (66)
T ss_dssp CCCSBSSSSCC----SSCEECSSCCCEECTTTSSSCCSSCCS-SCCCCHHHHHTCC
T ss_pred CCCCCccCCCC----CCEEEcCCCChhhcccccCCCcCcCCC-CCeECccccCccc
Confidence 44566 67753 589999999999999999976654433 6899999986543
No 46
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=98.61 E-value=2.2e-08 Score=67.64 Aligned_cols=63 Identities=17% Similarity=0.500 Sum_probs=46.0
Q ss_pred ceEE-ecCCCCCC-CCceEeCCCCCceecCCCCCCChhh---hcCCCeEEcccCccccccccccCCCC
Q 029867 108 AVYC-KCEMPYNP-DDLMVQCEGCKDWFHPSCMGMTIEE---AKKLDHFLCSDCSSDVDAKRSLNTFS 170 (186)
Q Consensus 108 ~~~C-~C~~~~~~-~~~~i~C~~C~~W~H~~Cv~~~~~~---~~~~~~~~C~~C~~~~~~~~~~~~~~ 170 (186)
...| +|+....+ +..|+.||.|...||..|++.+... ......|+|+.|......+.......
T Consensus 16 ~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~~~~~~~~~~ 83 (88)
T 1wev_A 16 GLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMKRMAQKNQKS 83 (88)
T ss_dssp CCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHCCSTTCCCCS
T ss_pred CCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhhhhccccCCC
Confidence 4456 88877543 4799999999999999999987653 12236899999998776554444333
No 47
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=98.60 E-value=1.4e-08 Score=64.02 Aligned_cols=50 Identities=20% Similarity=0.664 Sum_probs=38.3
Q ss_pred CcceEE-ecCCCCCCCCceEeCCCCCceecCCCCCCChhhhcCCCeEEcccCcccc
Q 029867 106 RVAVYC-KCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDCSSDV 160 (186)
Q Consensus 106 ~~~~~C-~C~~~~~~~~~~i~C~~C~~W~H~~Cv~~~~~~~~~~~~~~C~~C~~~~ 160 (186)
.+..+| +|+. ++.|+.||.|..+||..|++.+...... ..|+|+.|....
T Consensus 7 ~~~~~C~vC~~----~g~ll~Cd~C~~~fH~~Cl~ppl~~~p~-g~W~C~~C~~~~ 57 (61)
T 1mm2_A 7 HHMEFCRVCKD----GGELLCCDTCPSSYHIHCLNPPLPEIPN-GEWLCPRCTCPA 57 (61)
T ss_dssp SSCSSCTTTCC----CSSCBCCSSSCCCBCSSSSSSCCSSCCS-SCCCCTTTTTTC
T ss_pred CCCCcCCCCCC----CCCEEEcCCCCHHHcccccCCCcCcCCC-CccCChhhcCch
Confidence 345566 5765 4589999999999999999976654433 689999998653
No 48
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.59 E-value=3.1e-08 Score=65.23 Aligned_cols=46 Identities=15% Similarity=0.566 Sum_probs=37.1
Q ss_pred ecCCCCCCCCceEeCCCCCceecCCCCCCChhhhcCCCeEEcccCcc
Q 029867 112 KCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDCSS 158 (186)
Q Consensus 112 ~C~~~~~~~~~~i~C~~C~~W~H~~Cv~~~~~~~~~~~~~~C~~C~~ 158 (186)
+|++.. .++.|+.||.|..+||..|++.+.........|+|+.|..
T Consensus 31 vC~~~~-~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 31 VCGGKH-EPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SSCCCC-CSTTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CcCCcC-CCCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 677764 3789999999999999999997666544434899999974
No 49
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=98.57 E-value=7.3e-08 Score=64.82 Aligned_cols=62 Identities=24% Similarity=0.497 Sum_probs=47.7
Q ss_pred cceEE-ecCCCCCCCCceEeCCCCCceecCCCCCCChhhhcCCCeEEcccCccccccccccCCCCCCC
Q 029867 107 VAVYC-KCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDCSSDVDAKRSLNTFSVSP 173 (186)
Q Consensus 107 ~~~~C-~C~~~~~~~~~~i~C~~C~~W~H~~Cv~~~~~~~~~~~~~~C~~C~~~~~~~~~~~~~~~~~ 173 (186)
...+| +|+.. +.++.||.|...||..|+..+...... ..|+|+.|.....+|...+.+++..
T Consensus 24 n~~~C~vC~~~----g~LL~CD~C~~~fH~~Cl~PpL~~~P~-g~W~C~~C~~~~~~ke~~~~l~~~~ 86 (88)
T 1fp0_A 24 SATICRVCQKP----GDLVMCNQCEFCFHLDCHLPALQDVPG-EEWSCSLCHVLPDLKEEDVDLQACK 86 (88)
T ss_dssp SSSCCSSSCSS----SCCEECTTSSCEECTTSSSTTCCCCCS-SSCCCCSCCCCCSSCCSSTTSCCSS
T ss_pred CCCcCcCcCCC----CCEEECCCCCCceecccCCCCCCCCcC-CCcCCccccCCCccchhhccccccc
Confidence 45567 67653 479999999999999999766654433 6899999999888887777766554
No 50
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=98.49 E-value=1.3e-08 Score=65.97 Aligned_cols=51 Identities=20% Similarity=0.518 Sum_probs=39.8
Q ss_pred ceEE-ecCCCC-CCCCceEeCCCCCceecCCCCCCChhhhcCCCeEEcccCccccc
Q 029867 108 AVYC-KCEMPY-NPDDLMVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDCSSDVD 161 (186)
Q Consensus 108 ~~~C-~C~~~~-~~~~~~i~C~~C~~W~H~~Cv~~~~~~~~~~~~~~C~~C~~~~~ 161 (186)
...| +|+... ..++.||.||.|..|||..|++++..+ ...|+|+.|.....
T Consensus 16 ~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP---~g~W~C~~C~~~~~ 68 (71)
T 2ku3_A 16 DAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIP---EGQWLCRHCLQSRA 68 (71)
T ss_dssp SCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCC---SSCCCCHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCC---CCCcCCccCcCcCc
Confidence 3445 888764 346799999999999999999998522 26899999986543
No 51
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=98.48 E-value=6e-08 Score=63.83 Aligned_cols=46 Identities=22% Similarity=0.590 Sum_probs=36.3
Q ss_pred ecCCCCCCCCceEeCCCCCceecCCCCCCChhhhcCCCeEEcccCcc
Q 029867 112 KCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDCSS 158 (186)
Q Consensus 112 ~C~~~~~~~~~~i~C~~C~~W~H~~Cv~~~~~~~~~~~~~~C~~C~~ 158 (186)
+|+...+ .+.||.||.|..+||..|++.+.......+.|+|+.|..
T Consensus 31 vC~~~~d-~~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 31 LCGGRQD-PDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp TTCCCSC-GGGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred ccCCCCC-CcceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 6666543 579999999999999999997766555544599999974
No 52
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=98.38 E-value=1.2e-07 Score=74.28 Aligned_cols=46 Identities=22% Similarity=0.590 Sum_probs=33.0
Q ss_pred ecCCCCCCCCceEeCCCCCceecCCCCCCChhhhcCCCeEEcccCcc
Q 029867 112 KCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDCSS 158 (186)
Q Consensus 112 ~C~~~~~~~~~~i~C~~C~~W~H~~Cv~~~~~~~~~~~~~~C~~C~~ 158 (186)
+|+...+ ++.|+.||.|..+||..|++++.........|+|+.|..
T Consensus 179 vC~~~~~-~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 179 LCGGRQD-PDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp SSCCCCC---CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred CCCCCCC-CCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcC
Confidence 6666543 679999999999999999997776554434899999975
No 53
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=98.34 E-value=4e-08 Score=66.39 Aligned_cols=53 Identities=19% Similarity=0.491 Sum_probs=41.2
Q ss_pred ceEE-ecCCCC-CCCCceEeCCCCCceecCCCCCCChhhhcCCCeEEcccCccccccc
Q 029867 108 AVYC-KCEMPY-NPDDLMVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDCSSDVDAK 163 (186)
Q Consensus 108 ~~~C-~C~~~~-~~~~~~i~C~~C~~W~H~~Cv~~~~~~~~~~~~~~C~~C~~~~~~~ 163 (186)
...| +|+... ..++.||.||.|..|||..|++++..+ ...|+|+.|......+
T Consensus 25 ~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP---~g~W~C~~C~~~~~~~ 79 (88)
T 2l43_A 25 DAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIP---EGQWLCRHCLQSRARP 79 (88)
T ss_dssp CCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCC---SSCCCCHHHHHHTTSC
T ss_pred CCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccC---CCceECccccCccchh
Confidence 3445 888764 335799999999999999999998522 2689999998776544
No 54
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=98.29 E-value=1.5e-07 Score=60.05 Aligned_cols=45 Identities=24% Similarity=0.498 Sum_probs=35.4
Q ss_pred EE-ecCCCCCCCCceEeCCCCCceecCCCCCCChhhhcCCCeEEcccCccc
Q 029867 110 YC-KCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDCSSD 159 (186)
Q Consensus 110 ~C-~C~~~~~~~~~~i~C~~C~~W~H~~Cv~~~~~~~~~~~~~~C~~C~~~ 159 (186)
.| +|+. ++.||.||.|..+||..|++.+...... ..|+|+.|...
T Consensus 14 ~C~vC~~----~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~-g~W~C~~C~~~ 59 (66)
T 2lri_C 14 RCGVCGD----GTDVLRCTHCAAAFHWRCHFPAGTSRPG-TGLRCRSCSGD 59 (66)
T ss_dssp CCTTTSC----CTTCEECSSSCCEECHHHHCTTTCCCCS-SSCCCTTTTTC
T ss_pred CcCCCCC----CCeEEECCCCCCceecccCCCccCcCCC-CCEECccccCC
Confidence 35 6764 4569999999999999999877665443 57999999754
No 55
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=98.23 E-value=2.7e-07 Score=65.25 Aligned_cols=50 Identities=24% Similarity=0.621 Sum_probs=39.1
Q ss_pred EE-ecCCCCCCCCceEeCCCCCceecCCCCCCChhhhcCCCeEEcccCccccc
Q 029867 110 YC-KCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDCSSDVD 161 (186)
Q Consensus 110 ~C-~C~~~~~~~~~~i~C~~C~~W~H~~Cv~~~~~~~~~~~~~~C~~C~~~~~ 161 (186)
.| +|+...+ ++.|+.||.|..+||..|++.+...... ..|+|+.|.....
T Consensus 60 ~C~~C~~~~~-~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~-g~W~C~~C~~~~~ 110 (114)
T 2kwj_A 60 SCILCGTSEN-DDQLLFCDDCDRGYHMYCLNPPVAEPPE-GSWSCHLCWELLK 110 (114)
T ss_dssp CCTTTTCCTT-TTTEEECSSSCCEEETTTSSSCCSSCCS-SCCCCHHHHHHHH
T ss_pred ccCcccccCC-CCceEEcCCCCccccccccCCCccCCCC-CCeECccccchhh
Confidence 45 6777654 6799999999999999999976654433 5899999986544
No 56
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=98.22 E-value=5.4e-07 Score=63.46 Aligned_cols=49 Identities=24% Similarity=0.614 Sum_probs=38.6
Q ss_pred EE-ecCCCCCCCCceEeCCCCCceecCCCCCCChhhhcCCCeEEcccCccc
Q 029867 110 YC-KCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDCSSD 159 (186)
Q Consensus 110 ~C-~C~~~~~~~~~~i~C~~C~~W~H~~Cv~~~~~~~~~~~~~~C~~C~~~ 159 (186)
.| +|+.....++.|+.||.|..+||..|++.+...... ..|+|+.|..+
T Consensus 63 ~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~-~~W~C~~C~~k 112 (112)
T 3v43_A 63 TCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPK-GMWICQICRPR 112 (112)
T ss_dssp CBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCS-SCCCCTTTSCC
T ss_pred ccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCC-CCeECCCCCCc
Confidence 45 777765556799999999999999999876655443 58999999753
No 57
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=98.20 E-value=1.1e-06 Score=67.05 Aligned_cols=48 Identities=25% Similarity=0.610 Sum_probs=37.3
Q ss_pred eEE-ecCCCCCCCCceEeCCCCCceecCCCCCCChhhhcCCCeEEcccCccccc
Q 029867 109 VYC-KCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDCSSDVD 161 (186)
Q Consensus 109 ~~C-~C~~~~~~~~~~i~C~~C~~W~H~~Cv~~~~~~~~~~~~~~C~~C~~~~~ 161 (186)
.+| +|+. ++.++.||.|..+||..|++.+...... ..|+|+.|.....
T Consensus 5 ~~C~~C~~----~g~ll~Cd~C~~~~H~~C~~p~l~~~p~-~~W~C~~C~~~~~ 53 (184)
T 3o36_A 5 DWCAVCQN----GGELLCCEKCPKVFHLSCHVPTLTNFPS-GEWICTFCRDLSK 53 (184)
T ss_dssp SSCTTTCC----CSSCEECSSSSCEECTTTSSSCCSSCCS-SCCCCTTTSCSSS
T ss_pred CccccCCC----CCeeeecCCCCcccCccccCCCCCCCCC-CCEECccccCccc
Confidence 356 6764 3569999999999999999877664433 5799999997654
No 58
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=98.17 E-value=4.8e-07 Score=63.13 Aligned_cols=46 Identities=20% Similarity=0.403 Sum_probs=35.2
Q ss_pred CcceEEecCCCCCCCCceEeCC--CCCceecCCCCCCChhhhcCCCeEEcccCc
Q 029867 106 RVAVYCKCEMPYNPDDLMVQCE--GCKDWFHPSCMGMTIEEAKKLDHFLCSDCS 157 (186)
Q Consensus 106 ~~~~~C~C~~~~~~~~~~i~C~--~C~~W~H~~Cv~~~~~~~~~~~~~~C~~C~ 157 (186)
....+|.+.+ .++.||.|| .|..|||..||++...+ ...|+|+.|.
T Consensus 13 ~~~~~C~~C~---~~G~ll~CD~~~Cp~~fH~~Cl~L~~~P---~g~W~Cp~c~ 60 (107)
T 4gne_A 13 MHEDYCFQCG---DGGELVMCDKKDCPKAYHLLCLNLTQPP---YGKWECPWHQ 60 (107)
T ss_dssp SSCSSCTTTC---CCSEEEECCSTTCCCEECTGGGTCSSCC---SSCCCCGGGB
T ss_pred CCCCCCCcCC---CCCcEeEECCCCCCcccccccCcCCcCC---CCCEECCCCC
Confidence 3566785444 257899999 89999999999966543 2579999876
No 59
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=98.16 E-value=6.2e-07 Score=69.69 Aligned_cols=49 Identities=22% Similarity=0.536 Sum_probs=37.9
Q ss_pred ceEE-ecCCCCCCCCceEeCCCCCceecCCCCCCChhhhcCCCeEEcccCccccc
Q 029867 108 AVYC-KCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDCSSDVD 161 (186)
Q Consensus 108 ~~~C-~C~~~~~~~~~~i~C~~C~~W~H~~Cv~~~~~~~~~~~~~~C~~C~~~~~ 161 (186)
..+| +|+.. +.|+.||+|..+||..|++++...... ..|+|+.|.....
T Consensus 7 ~~~C~~C~~~----g~ll~Cd~C~~~~H~~Cl~p~l~~~p~-~~W~C~~C~~~~~ 56 (207)
T 3u5n_A 7 EDWCAVCQNG----GDLLCCEKCPKVFHLTCHVPTLLSFPS-GDWICTFCRDIGK 56 (207)
T ss_dssp CSSBTTTCCC----EEEEECSSSSCEECTTTSSSCCSSCCS-SCCCCTTTSCSSS
T ss_pred CCCCCCCCCC----CceEEcCCCCCccCCccCCCCCCCCCC-CCEEeCceeCccc
Confidence 3456 67653 469999999999999999876654433 5799999997654
No 60
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=98.09 E-value=1e-06 Score=61.84 Aligned_cols=50 Identities=20% Similarity=0.656 Sum_probs=39.1
Q ss_pred EE-ecCCCCCCCCceEeCCCCCceecCCCCCCChhhhcCCCeEEcccCccccc
Q 029867 110 YC-KCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDCSSDVD 161 (186)
Q Consensus 110 ~C-~C~~~~~~~~~~i~C~~C~~W~H~~Cv~~~~~~~~~~~~~~C~~C~~~~~ 161 (186)
.| +|+...+ +..|+.||.|..+||..|++.+...... ..|+|+.|.....
T Consensus 56 ~C~~C~~~~~-~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~-g~W~C~~C~~c~~ 106 (111)
T 2ysm_A 56 VCQNCKQSGE-DSKMLVCDTCDKGYHTFCLQPVMKSVPT-NGWKCKNCRICIS 106 (111)
T ss_dssp CCTTTCCCSC-CTTEEECSSSCCEEEGGGSSSCCSSCCS-SCCCCHHHHCCSC
T ss_pred cccccCccCC-CCCeeECCCCCcHHhHHhcCCccccCCC-CCcCCcCCcCcCC
Confidence 45 6777654 5689999999999999999976654433 6899999976543
No 61
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=97.87 E-value=5.6e-06 Score=58.45 Aligned_cols=43 Identities=21% Similarity=0.569 Sum_probs=32.0
Q ss_pred CCCCceEeCCCCCceecCCCCCCChhh---hcCCCeEEcccCcccc
Q 029867 118 NPDDLMVQCEGCKDWFHPSCMGMTIEE---AKKLDHFLCSDCSSDV 160 (186)
Q Consensus 118 ~~~~~~i~C~~C~~W~H~~Cv~~~~~~---~~~~~~~~C~~C~~~~ 160 (186)
+.+..|++|+.|+.|||..|+++..+. .+.++.|.|+.|....
T Consensus 70 ~~~~~m~~C~~C~~~~H~~C~~~~~~~~~~~~~~~~~~C~~C~~~~ 115 (117)
T 4bbq_A 70 DFEKKLMECCICNEIVHPGCLQMDGEGLLNEELPNCWECPKCYQED 115 (117)
T ss_dssp CGGGSCEEETTTCCEECGGGCCSCCCCEECSSSSSEEECTTTC---
T ss_pred ccCcceEEeeecCCeEECCCCCCCccccccccCCCCeECCCCcCCC
Confidence 335679999999999999999987642 2234579999998754
No 62
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=97.72 E-value=2e-05 Score=55.06 Aligned_cols=50 Identities=20% Similarity=0.602 Sum_probs=38.2
Q ss_pred cceEE-ecCCCCCCCCceEeCCCCCceecCCCCCCChhhhcCCCeEEcccCcc
Q 029867 107 VAVYC-KCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDCSS 158 (186)
Q Consensus 107 ~~~~C-~C~~~~~~~~~~i~C~~C~~W~H~~Cv~~~~~~~~~~~~~~C~~C~~ 158 (186)
....| +|+...+ ...||.|+.|.+.||..|++++...... ..|.|+.|..
T Consensus 6 ~~~~C~~C~~~g~-~~~ll~C~~C~~~~H~~Cl~~~~~~~~~-~~W~C~~C~~ 56 (111)
T 2ysm_A 6 SGANCAVCDSPGD-LLDQFFCTTCGQHYHGMCLDIAVTPLKR-AGWQCPECKV 56 (111)
T ss_dssp CCSCBTTTCCCCC-TTTSEECSSSCCEECTTTTTCCCCTTTS-TTCCCTTTCC
T ss_pred CCCCCcCCCCCCC-CcCCeECCCCCCCcChHHhCCccccccc-cCccCCcCCc
Confidence 34456 7877653 3578999999999999999998765433 6899998863
No 63
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=97.52 E-value=7.9e-05 Score=56.97 Aligned_cols=48 Identities=25% Similarity=0.578 Sum_probs=36.6
Q ss_pred EE-ecCCCCCCCCceEeCCCCCceecCCCCCCChhhhcCCCeEEcccCcccccc
Q 029867 110 YC-KCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDCSSDVDA 162 (186)
Q Consensus 110 ~C-~C~~~~~~~~~~i~C~~C~~W~H~~Cv~~~~~~~~~~~~~~C~~C~~~~~~ 162 (186)
+| +|+. ++.++.||.|...||..|+..+...... ..|+|+.|......
T Consensus 4 ~C~~C~~----~g~ll~Cd~C~~~~H~~Cl~p~l~~~p~-g~W~C~~C~~~~~~ 52 (189)
T 2ro1_A 4 ICRVCQK----PGDLVMCNQCEFCFHLDCHLPALQDVPG-EEWSCSLCHVLPDL 52 (189)
T ss_dssp CBTTTCC----CSSCCCCTTTCCBCCSTTSTTCCSSCCC-TTCCTTTTSCSCCT
T ss_pred cCccCCC----CCceeECCCCCchhccccCCCCcccCCC-CCCCCcCccCCCCC
Confidence 45 5554 3569999999999999999766554433 57999999987653
No 64
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=97.22 E-value=5.3e-05 Score=53.12 Aligned_cols=38 Identities=26% Similarity=0.646 Sum_probs=30.4
Q ss_pred CCceEeCCCCCceecCCCCCCChhh--hcCCCeEEcccCc
Q 029867 120 DDLMVQCEGCKDWFHPSCMGMTIEE--AKKLDHFLCSDCS 157 (186)
Q Consensus 120 ~~~~i~C~~C~~W~H~~Cv~~~~~~--~~~~~~~~C~~C~ 157 (186)
.+.||.|+.|...||..|+++.... ......|.|+.|.
T Consensus 23 ~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 62 (112)
T 3v43_A 23 PEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECK 62 (112)
T ss_dssp CCCCEECTTTCCEECHHHHTCCHHHHHHHHTSCCCCTTTC
T ss_pred chhceEhhhcCCCCCCchhcCCHHHHHHhhccccccccCC
Confidence 4799999999999999999986432 1223689999996
No 65
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=97.21 E-value=0.0001 Score=51.79 Aligned_cols=38 Identities=26% Similarity=0.681 Sum_probs=29.9
Q ss_pred CCceEeCCCCCceecCCCCCCChhhh--cCCCeEEcccCc
Q 029867 120 DDLMVQCEGCKDWFHPSCMGMTIEEA--KKLDHFLCSDCS 157 (186)
Q Consensus 120 ~~~~i~C~~C~~W~H~~Cv~~~~~~~--~~~~~~~C~~C~ 157 (186)
.+.||.|+.|...||..|++++.... .....|.|+.|.
T Consensus 20 ~~~Li~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 59 (114)
T 2kwj_A 20 PEELVSCADCGRSGHPTCLQFTLNMTEAVKTYKWQCIECK 59 (114)
T ss_dssp CCCCEECSSSCCEECTTTTTCCHHHHHHHHHTTCCCGGGC
T ss_pred CCCCeEeCCCCCccchhhCCChhhhhhccCCCccCccccC
Confidence 47999999999999999999985421 122579988885
No 66
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=96.80 E-value=6.3e-05 Score=54.86 Aligned_cols=51 Identities=16% Similarity=0.484 Sum_probs=36.9
Q ss_pred CcceEE-ecCCCCCCCCceEeCCCCCceecCCCCCCChhh-----h-cCCCeEEcccCcccc
Q 029867 106 RVAVYC-KCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEE-----A-KKLDHFLCSDCSSDV 160 (186)
Q Consensus 106 ~~~~~C-~C~~~~~~~~~~i~C~~C~~W~H~~Cv~~~~~~-----~-~~~~~~~C~~C~~~~ 160 (186)
....+| +|+. ++.++.||.|-.-||..|+..+..+ . ...+.|.|+.|....
T Consensus 61 g~~d~C~vC~~----GG~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~~p 118 (142)
T 2lbm_A 61 GMDEQCRWCAE----GGNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHPEP 118 (142)
T ss_dssp SCBCSCSSSCC----CSSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCCCT
T ss_pred CCCCeecccCC----CCcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccCcc
Confidence 345566 5544 6789999999999999999854431 1 234789999998653
No 67
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=96.22 E-value=0.00025 Score=50.83 Aligned_cols=51 Identities=16% Similarity=0.468 Sum_probs=36.9
Q ss_pred cceEE-ecCCCCCCCCceEeCCCCCceecCCCCCCCh-----hhh-cCCCeEEcccCccccc
Q 029867 107 VAVYC-KCEMPYNPDDLMVQCEGCKDWFHPSCMGMTI-----EEA-KKLDHFLCSDCSSDVD 161 (186)
Q Consensus 107 ~~~~C-~C~~~~~~~~~~i~C~~C~~W~H~~Cv~~~~-----~~~-~~~~~~~C~~C~~~~~ 161 (186)
...+| +|+. ++.++.||.|-.-||..|+.... ... ...+.|.|..|....-
T Consensus 56 ~~~~C~vC~d----GG~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~pl 113 (129)
T 3ql9_A 56 MDEQCRWCAE----GGNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHPEPL 113 (129)
T ss_dssp CBSSCTTTCC----CSEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCCGGG
T ss_pred CCCcCeecCC----CCeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCCHHH
Confidence 45566 5553 67899999999999999998541 222 1247899999976543
No 68
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=90.36 E-value=0.01 Score=38.99 Aligned_cols=50 Identities=22% Similarity=0.521 Sum_probs=35.3
Q ss_pred cceEE-ecCCCCCCCCceEeCCCCCceecCCCCCC---Chh--------hhcCCCeEEcccCcc
Q 029867 107 VAVYC-KCEMPYNPDDLMVQCEGCKDWFHPSCMGM---TIE--------EAKKLDHFLCSDCSS 158 (186)
Q Consensus 107 ~~~~C-~C~~~~~~~~~~i~C~~C~~W~H~~Cv~~---~~~--------~~~~~~~~~C~~C~~ 158 (186)
....| +|.+. +.+.++.|..|.+-||..|+.. ... .+.....|.|+.|..
T Consensus 14 ~D~~C~VC~~~--t~~~l~pCRvC~RvfH~~CL~r~gy~~~~~a~e~~l~A~T~~GWSC~~Cen 75 (89)
T 1wil_A 14 NDEMCDVCEVW--TAESLFPCRVCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYCDN 75 (89)
T ss_dssp CSCCCTTTCCC--CSSCCSSCSSSSSCCCHHHHHHHTSCCCCCCCSCSCCCSSSSSCCCTTTCC
T ss_pred CCcccCccccc--cccceeccccccccccHhhcccccccccHHHHHHHHccCCCCCccccccch
Confidence 45567 77775 3789999999999999999843 111 122234799999943
No 69
>1weq_A PHD finger protein 7; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=86.89 E-value=0.45 Score=31.24 Aligned_cols=48 Identities=19% Similarity=0.396 Sum_probs=37.1
Q ss_pred cceEEecCCCCCCC-----CceEeCCCCC-ceecCCCCCCChhhhcCCCeEEcccCcc
Q 029867 107 VAVYCKCEMPYNPD-----DLMVQCEGCK-DWFHPSCMGMTIEEAKKLDHFLCSDCSS 158 (186)
Q Consensus 107 ~~~~C~C~~~~~~~-----~~~i~C~~C~-~W~H~~Cv~~~~~~~~~~~~~~C~~C~~ 158 (186)
....|+|....+.. -.+|.|..|. .=-|..|..+... .+.|.|..|..
T Consensus 25 dA~~Clc~~GR~~~~~~~~W~L~lC~~Cgs~gtH~~Cs~l~~~----~~~weC~~C~~ 78 (85)
T 1weq_A 25 DAPICLYEQGRDSFEDEGRWRLILCATCGSHGTHRDCSSLRPN----SKKWECNECLP 78 (85)
T ss_dssp CCSCCCSTTCSSCCBSSSTTBCEECSSSCCCEECSGGGTCCTT----CSCCCCTTTSC
T ss_pred CccccCCCCCcccccCCCCEEEEeCcccCCchhHHHHhCCcCC----CCCEECCcCcc
Confidence 45678887654432 5899999995 8999999997643 27899999984
No 70
>2l7p_A Histone-lysine N-methyltransferase ASHH2; CW-domain; NMR {Arabidopsis thaliana}
Probab=86.14 E-value=0.41 Score=32.45 Aligned_cols=37 Identities=16% Similarity=0.566 Sum_probs=24.0
Q ss_pred CCCCCceEeCCCCCceecCCCCCCChhhhcCCCeEEccc
Q 029867 117 YNPDDLMVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSD 155 (186)
Q Consensus 117 ~~~~~~~i~C~~C~~W~H~~Cv~~~~~~~~~~~~~~C~~ 155 (186)
..+...+|||+.|.+|=-.. .++.. .....+.|+|..
T Consensus 22 ~~~~~~WVQCD~C~KWRrLP-~~~~~-~~~~pd~W~C~m 58 (100)
T 2l7p_A 22 YSTESAWVRCDDCFKWRRIP-ASVVG-SIDESSRWICMN 58 (100)
T ss_dssp CSSSSEEEECTTTCCEEEEC-HHHHT-TSTTSSCCCGGG
T ss_pred CCCCCeEEeeCCCCccccCC-hhHcc-ccCCCCCceeCC
Confidence 45678999999999997654 11111 111247899965
No 71
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=85.63 E-value=0.36 Score=31.18 Aligned_cols=55 Identities=18% Similarity=0.474 Sum_probs=35.0
Q ss_pred cceEE-ecCCCCCCCCceEe---CCCCCceecCCCCCCChhhhcCCCeEEcccCcccccccc
Q 029867 107 VAVYC-KCEMPYNPDDLMVQ---CEGCKDWFHPSCMGMTIEEAKKLDHFLCSDCSSDVDAKR 164 (186)
Q Consensus 107 ~~~~C-~C~~~~~~~~~~i~---C~~C~~W~H~~Cv~~~~~~~~~~~~~~C~~C~~~~~~~~ 164 (186)
....| ||-..++.++.+|. |.+...+||..|+..=.... ....||.|.....+..
T Consensus 14 ~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~---~~~~CplCr~~~~~~~ 72 (80)
T 2d8s_A 14 SQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSS---DTRCCELCKYEFIMET 72 (80)
T ss_dssp TSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHH---CCSBCSSSCCBCCCCC
T ss_pred CCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhC---CCCCCCCCCCeeecCc
Confidence 34456 88877765666663 12224999999995433322 2358999998876443
No 72
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=84.99 E-value=0.25 Score=28.79 Aligned_cols=46 Identities=24% Similarity=0.477 Sum_probs=31.6
Q ss_pred eEE-ecCCCCCCCCceEeCCCCCceecCCCCCCChhhhcCCCeEEcccCccc
Q 029867 109 VYC-KCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDCSSD 159 (186)
Q Consensus 109 ~~C-~C~~~~~~~~~~i~C~~C~~W~H~~Cv~~~~~~~~~~~~~~C~~C~~~ 159 (186)
..| ||-.....+...+.-..|+-.||..|+..-.. ....||.|+..
T Consensus 6 ~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~-----~~~~CP~Cr~~ 52 (55)
T 1iym_A 6 VECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLG-----SHSTCPLCRLT 52 (55)
T ss_dssp CCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTT-----TCCSCSSSCCC
T ss_pred CcCccCCccccCCCceEECCCCCCcccHHHHHHHHH-----cCCcCcCCCCE
Confidence 345 77777665555666667999999999853322 23479999864
No 73
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=81.09 E-value=0.082 Score=44.39 Aligned_cols=53 Identities=17% Similarity=0.567 Sum_probs=38.5
Q ss_pred CCcceEE-ecCCCCCCCCceEeCC--CCCceecCCCCCCCh-----hhhcCCCeEEcccCccccc
Q 029867 105 DRVAVYC-KCEMPYNPDDLMVQCE--GCKDWFHPSCMGMTI-----EEAKKLDHFLCSDCSSDVD 161 (186)
Q Consensus 105 ~~~~~~C-~C~~~~~~~~~~i~C~--~C~~W~H~~Cv~~~~-----~~~~~~~~~~C~~C~~~~~ 161 (186)
+....|| +|+. ++.++.|+ .|..-|-..|+.... ......+.|.|-.|.....
T Consensus 90 DG~~~yCr~C~~----Gg~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p~p~ 150 (386)
T 2pv0_B 90 DGYQSYCSICCS----GETLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLPSSR 150 (386)
T ss_dssp SSSBCSCTTTCC----CSSCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSSCCE
T ss_pred CCCcccceEcCC----CCeEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCCcch
Confidence 3456677 5554 57899999 999999999985322 1223347999999998764
No 74
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=78.79 E-value=0.1 Score=38.38 Aligned_cols=53 Identities=25% Similarity=0.514 Sum_probs=39.0
Q ss_pred CCcceEE-ecCCCCCCCCceEeCC--CCCceecCCCCCCC-----hhhhcCCCeEEcccCccccc
Q 029867 105 DRVAVYC-KCEMPYNPDDLMVQCE--GCKDWFHPSCMGMT-----IEEAKKLDHFLCSDCSSDVD 161 (186)
Q Consensus 105 ~~~~~~C-~C~~~~~~~~~~i~C~--~C~~W~H~~Cv~~~-----~~~~~~~~~~~C~~C~~~~~ 161 (186)
+....|| +|+. ++.++.|+ .|..-|-..||... .......+.|.|-.|.....
T Consensus 76 DG~~~yC~wC~~----Gg~l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~P~~l 136 (159)
T 3a1b_A 76 DGYQSYCTICCG----GREVLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCGHKGT 136 (159)
T ss_dssp TSSBSSCTTTSC----CSEEEECSSTTTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTCSSCE
T ss_pred CCCcceeeEecC----CCeEEeeCCCCCCCchhHHHHHHhcCHhHHHHHhccCCCEEEecCCccH
Confidence 3456677 6664 67999999 89999999998531 12333458999999998764
No 75
>2lq6_A Bromodomain-containing protein 1; PHD finger, metal binding protein; NMR {Homo sapiens}
Probab=77.69 E-value=0.74 Score=30.27 Aligned_cols=32 Identities=28% Similarity=0.623 Sum_probs=24.9
Q ss_pred CCcceEE-ecCCCCCCCCceEeCC--CCCceecCCCC
Q 029867 105 DRVAVYC-KCEMPYNPDDLMVQCE--GCKDWFHPSCM 138 (186)
Q Consensus 105 ~~~~~~C-~C~~~~~~~~~~i~C~--~C~~W~H~~Cv 138 (186)
.++...| +|++.. .+-.|||. .|...||..|.
T Consensus 14 ~R~~l~C~iC~~~~--~GAciqC~~~~C~~~fHv~CA 48 (87)
T 2lq6_A 14 ARWKLTCYLCKQKG--VGASIQCHKANCYTAFHVTCA 48 (87)
T ss_dssp CCCCCCBTTTTBCC--SSCEEECSCTTTCCEEEHHHH
T ss_pred HHhcCCCcCCCCCC--CcEeEecCCCCCCCcCcHHHH
Confidence 4566777 887641 47899998 59999999996
No 76
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=76.14 E-value=0.48 Score=27.46 Aligned_cols=46 Identities=20% Similarity=0.497 Sum_probs=30.9
Q ss_pred EE-ecCCCCCCCCceEeCCCCCceecCCCCCCChhhhcCCCeEEcccCcccc
Q 029867 110 YC-KCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDCSSDV 160 (186)
Q Consensus 110 ~C-~C~~~~~~~~~~i~C~~C~~W~H~~Cv~~~~~~~~~~~~~~C~~C~~~~ 160 (186)
.| ||......++..+.--.|+-.||..|+..-... ...||.|+...
T Consensus 7 ~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-----~~~CP~Cr~~~ 53 (55)
T 2ecm_A 7 GCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKE-----GYRCPLCSGPS 53 (55)
T ss_dssp SCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHH-----TCCCTTSCCSS
T ss_pred cCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHc-----CCcCCCCCCcC
Confidence 45 777766444555666679999999998543322 15799998653
No 77
>2e61_A Zinc finger CW-type PWWP domain protein 1; ZF-CW domain, structural genomics, NPPSFA, national project protein structural and functional analyses; NMR {Homo sapiens} PDB: 2rr4_A*
Probab=76.03 E-value=2 Score=26.93 Aligned_cols=34 Identities=21% Similarity=0.433 Sum_probs=22.8
Q ss_pred CCCCceEeCC--CCCceecCCCCCCChhhhcCCCeEEcc
Q 029867 118 NPDDLMVQCE--GCKDWFHPSCMGMTIEEAKKLDHFLCS 154 (186)
Q Consensus 118 ~~~~~~i~C~--~C~~W~H~~Cv~~~~~~~~~~~~~~C~ 154 (186)
.+...+|||+ .|.+|=-..= ++... ...+.|+|.
T Consensus 13 ~~~~~WVQCd~p~C~KWR~LP~-~~~~~--~lpd~W~C~ 48 (69)
T 2e61_A 13 GQCLVWVQCSFPNCGKWRRLCG-NIDPS--VLPDNWSCD 48 (69)
T ss_dssp CCCCCEEECSSTTTCCEEECCS-SCCTT--TSCTTCCGG
T ss_pred CCCCeEEEeCccccCcccCCcc-ccccc--cCCCcCEeC
Confidence 3467999999 9999977632 12211 134789996
No 78
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=74.39 E-value=3.5 Score=25.55 Aligned_cols=50 Identities=26% Similarity=0.557 Sum_probs=31.5
Q ss_pred cceEE-ecCCCCCCCCceEeCCCCCceecCCCCCCChhhhcCCCeEEcccCcccccc
Q 029867 107 VAVYC-KCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDCSSDVDA 162 (186)
Q Consensus 107 ~~~~C-~C~~~~~~~~~~i~C~~C~~W~H~~Cv~~~~~~~~~~~~~~C~~C~~~~~~ 162 (186)
....| ||...+......+. -.|+-.||..|+..-.. ....||.|+.....
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~-~~C~H~fc~~Ci~~~~~-----~~~~CP~Cr~~~~~ 64 (78)
T 2ect_A 14 SGLECPVCKEDYALGESVRQ-LPCNHLFHDSCIVPWLE-----QHDSCPVCRKSLTG 64 (78)
T ss_dssp SSCCCTTTTSCCCTTSCEEE-CTTSCEEETTTTHHHHT-----TTCSCTTTCCCCCC
T ss_pred CCCCCeeCCccccCCCCEEE-eCCCCeecHHHHHHHHH-----cCCcCcCcCCccCC
Confidence 34456 88776653333222 25888999999853322 12489999987663
No 79
>3zzs_A Transcription attenuation protein MTRB; transcription regulation, protein engineering; HET: TRP; 1.49A {Geobacillus stearothermophilus} SCOP: b.82.5.1 PDB: 3zzq_A* 3zzl_A*
Probab=70.10 E-value=7 Score=23.78 Aligned_cols=47 Identities=19% Similarity=0.177 Sum_probs=37.0
Q ss_pred EEEEEEeccccccCcccccCCCCeeEeeCCcceeeeceeeeeeEEEe
Q 029867 28 VRVRWYYRPEESIGGRRQFHGAKELFLSDHYDVQSAHTIEGKCTVHT 74 (186)
Q Consensus 28 v~v~Wfyrp~d~~~~~~~~~~~~ELf~S~~~d~~~~~~I~gkc~V~~ 74 (186)
|.|.=+-|..||.-......+..|+.....++...+-.|+|++.|++
T Consensus 13 V~VigltRg~dtkfhhtEkLdkGEVmiaQftehtsaiKiRGkA~i~t 59 (65)
T 3zzs_A 13 VNVIGLTRGADTRFHHSEKLDKGEVLIAQFTEHTSAIKVRGKAYIQT 59 (65)
T ss_dssp EEEEC-CCSSSCCCCCEEEECTTCEEEEECCSSCSEEEEESSEEEEE
T ss_pred eEEEEeeccCCccchhhhccCCCcEEEEEeecceeEEEEeceEEEEe
Confidence 45556678888865444556899999999999999999999999985
No 80
>1gtf_A Trp RNA-binding attenuation protein (trap); RNA binding protein-RNA complex, transcription attenuation, RNA-binding protein, Trp RNA; HET: TRP; 1.75A {Bacillus stearothermophilus} SCOP: b.82.5.1 PDB: 1c9s_A* 1gtn_A* 1qaw_A* 1utd_A* 1utf_A* 1utv_A* 2zp8_A* 3aqd_A 2zcz_A* 2zp9_A* 2zd0_A* 2ext_A* 2exs_A* 1wap_A*
Probab=68.69 E-value=9.3 Score=23.67 Aligned_cols=47 Identities=19% Similarity=0.177 Sum_probs=38.2
Q ss_pred EEEEEEeccccccCcccccCCCCeeEeeCCcceeeeceeeeeeEEEe
Q 029867 28 VRVRWYYRPEESIGGRRQFHGAKELFLSDHYDVQSAHTIEGKCTVHT 74 (186)
Q Consensus 28 v~v~Wfyrp~d~~~~~~~~~~~~ELf~S~~~d~~~~~~I~gkc~V~~ 74 (186)
|.|.=+-|..||.-......+..||.+....+-.++-.|+|++.|++
T Consensus 17 V~viGLTRG~dTkFhHtEKLDkGEVmiaQFTehTSAiKiRGka~i~t 63 (74)
T 1gtf_A 17 VNVIGLTRGADTRFHHSEKLDKGEVLIAQFTEHTSAIKVRGKAYIQT 63 (74)
T ss_dssp EEEEEEECSSSCCEEEEEEECTTCEEEEECCSSEEEEEEESSEEEEE
T ss_pred eEEEEeccCCcccccchhhcCCCcEEEEEeccceeeEEEeccEEEEe
Confidence 55666788888865544556899999999888889999999999985
No 81
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=67.61 E-value=1.2 Score=30.10 Aligned_cols=41 Identities=20% Similarity=0.364 Sum_probs=26.8
Q ss_pred eEeCCCCCceecCCCCCCChhhhcCCCeEEcccCccccccc
Q 029867 123 MVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDCSSDVDAK 163 (186)
Q Consensus 123 ~i~C~~C~~W~H~~Cv~~~~~~~~~~~~~~C~~C~~~~~~~ 163 (186)
.+.--.|+-.||..|+..-...........||.|+...+.+
T Consensus 55 ~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 55 VGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp CEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred ceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence 33355799999999996433221112457999999877643
No 82
>3zte_A Tryptophan operon RNA-binding attenuation protein; RNA-binding protein, transcription factors, trinucleotide RE; HET: TRP; 2.41A {Bacillus licheniformis} SCOP: b.82.5.1
Probab=67.45 E-value=9.9 Score=23.96 Aligned_cols=47 Identities=17% Similarity=0.157 Sum_probs=38.3
Q ss_pred EEEEEEeccccccCcccccCCCCeeEeeCCcceeeeceeeeeeEEEe
Q 029867 28 VRVRWYYRPEESIGGRRQFHGAKELFLSDHYDVQSAHTIEGKCTVHT 74 (186)
Q Consensus 28 v~v~Wfyrp~d~~~~~~~~~~~~ELf~S~~~d~~~~~~I~gkc~V~~ 74 (186)
|.|.=+-|..||.-......+..|+.....++...+-.|+|++.|++
T Consensus 21 V~VIGltRG~dtkfhHtEkLdkGEVmIaQFTehtsaiKiRGkA~I~t 67 (78)
T 3zte_A 21 VNVIGLTRGTDTRFHHSEKLDKGEVMICQFTEHTSAIKVRGEALIQT 67 (78)
T ss_dssp EEEEEEECSSSCCEEEEEEECTTCEEEEECCSSEEEEEEESSEEEEE
T ss_pred eEEEEeeccCCcccceehccCCCcEEEEEeecceeEEEEeeeEEEEe
Confidence 55666778888854444456899999999999999999999999985
No 83
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=66.29 E-value=2 Score=26.46 Aligned_cols=49 Identities=29% Similarity=0.594 Sum_probs=31.5
Q ss_pred cceEE-ecCCCCCCCCceEeCCCCCceecCCCCCCChhhhcCCCeEEcccCccccc
Q 029867 107 VAVYC-KCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDCSSDVD 161 (186)
Q Consensus 107 ~~~~C-~C~~~~~~~~~~i~C~~C~~W~H~~Cv~~~~~~~~~~~~~~C~~C~~~~~ 161 (186)
....| ||-.........+.. .|+-.||..|+..-... ...||.|+....
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~-~C~H~f~~~Ci~~~~~~-----~~~CP~Cr~~~~ 63 (74)
T 2ep4_A 14 LHELCAVCLEDFKPRDELGIC-PCKHAFHRKCLIKWLEV-----RKVCPLCNMPVL 63 (74)
T ss_dssp CSCBCSSSCCBCCSSSCEEEE-TTTEEEEHHHHHHHHHH-----CSBCTTTCCBCS
T ss_pred CCCCCcCCCcccCCCCcEEEc-CCCCEecHHHHHHHHHc-----CCcCCCcCcccc
Confidence 34456 888776544444333 48889999998543322 127999987655
No 84
>1v5n_A PDI-like hypothetical protein AT1G60420; DC1 domain, zinc binding domain, PDI-like protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.49.1.3
Probab=53.26 E-value=2.6 Score=27.65 Aligned_cols=33 Identities=24% Similarity=0.441 Sum_probs=25.3
Q ss_pred EE-ecCCCCCCCCceEeCCCCCceecCCCCCCChhh
Q 029867 110 YC-KCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEE 144 (186)
Q Consensus 110 ~C-~C~~~~~~~~~~i~C~~C~~W~H~~Cv~~~~~~ 144 (186)
.| .|+.. ..+.+..|..|+--.|..|+..+...
T Consensus 49 ~C~~C~~~--~~~~~Y~C~~C~f~lH~~Ca~~p~~~ 82 (89)
T 1v5n_A 49 TCDKCEEE--GTIWSYHCDECDFDLHAKCALNEDTK 82 (89)
T ss_dssp CCTTTSCC--CCSCEEECTTTCCCCCHHHHHCSSCS
T ss_pred EeCCCCCc--CCCcEEEcCCCCCeEcHHhcCCCCcc
Confidence 46 56664 36788999999999999998766654
No 85
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=51.18 E-value=3.7 Score=29.15 Aligned_cols=62 Identities=24% Similarity=0.339 Sum_probs=41.7
Q ss_pred cceEE-ecCCCCC-CCCceEeCCCCCceecCCCCCCChhhhcCCCeEEcccCccccccc-cccCCC
Q 029867 107 VAVYC-KCEMPYN-PDDLMVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDCSSDVDAK-RSLNTF 169 (186)
Q Consensus 107 ~~~~C-~C~~~~~-~~~~~i~C~~C~~W~H~~Cv~~~~~~~~~~~~~~C~~C~~~~~~~-~~~~~~ 169 (186)
....| +|..+.. -+..-..|..|+.-+-.+|-+...... ....|.|..|....+++ +.+.||
T Consensus 54 ~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~~~~~-~~~~W~C~vC~k~rel~~kSG~Wf 118 (134)
T 1zbd_B 54 GVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETSNNR-PHPVWLCKICLEQREVWKRSGAWF 118 (134)
T ss_dssp SSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEECCCSS-SSCCEEEHHHHHHHHHHHHTSHHH
T ss_pred CCccccccCCCcccccCCCCCCCCCCcccccccCCccCCCC-CccceechhhHHHHHHHHhhhHHH
Confidence 35567 8888762 234568999999888888877542211 22579999999988844 333343
No 86
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=48.00 E-value=1.8 Score=28.09 Aligned_cols=49 Identities=20% Similarity=0.559 Sum_probs=31.2
Q ss_pred cceEE-ecCCCCCCCCceEeCCCCCceecCCCCCCChhhhcCCCeEEcccCccccc
Q 029867 107 VAVYC-KCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDCSSDVD 161 (186)
Q Consensus 107 ~~~~C-~C~~~~~~~~~~i~C~~C~~W~H~~Cv~~~~~~~~~~~~~~C~~C~~~~~ 161 (186)
....| ||-..+..+...+.- .|+-.||..|+..-.. ....||.|+....
T Consensus 39 ~~~~C~IC~~~~~~~~~~~~l-~C~H~Fh~~Ci~~wl~-----~~~~CP~Cr~~~~ 88 (91)
T 2l0b_A 39 QEMCCPICCSEYVKGDVATEL-PCHHYFHKPCVSIWLQ-----KSGTCPVCRCMFP 88 (91)
T ss_dssp SCSEETTTTEECCTTCEEEEE-TTTEEEEHHHHHHHHT-----TTCBCTTTCCBSS
T ss_pred CCCCCcccChhhcCCCcEEec-CCCChHHHHHHHHHHH-----cCCcCcCcCccCC
Confidence 34567 887766544444433 4999999999853222 1248999986543
No 87
>1faq_A RAF-1; transferase, serine/threonine-protein kinase, proto- oncogene, zinc, ATP-binding, phorbol-ester binding; NMR {Homo sapiens} SCOP: g.49.1.1 PDB: 1far_A
Probab=46.66 E-value=11 Score=21.43 Aligned_cols=31 Identities=23% Similarity=0.516 Sum_probs=23.5
Q ss_pred cceEE-ecCCCCCCCCceEeCCCCCceecCCCCCC
Q 029867 107 VAVYC-KCEMPYNPDDLMVQCEGCKDWFHPSCMGM 140 (186)
Q Consensus 107 ~~~~C-~C~~~~~~~~~~i~C~~C~~W~H~~Cv~~ 140 (186)
.+.+| .|+...- .-.+|..|+.-.|..|+..
T Consensus 13 ~pt~C~~C~~~l~---qG~~C~~C~~~~H~~C~~~ 44 (52)
T 1faq_A 13 KLAFCDICQKFLL---NGFRCQTCGYKFHEHCSTK 44 (52)
T ss_dssp SCEECTTSSSEEC---SEEECTTTTCCBCSTTSSS
T ss_pred CCcCCCCcccccc---cCCEeCCCCCeEChhHHhh
Confidence 35677 6665432 5789999999999999864
No 88
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=46.50 E-value=2.6 Score=32.86 Aligned_cols=46 Identities=20% Similarity=0.454 Sum_probs=31.8
Q ss_pred ceEE-ecCCCCCCCCceEeCCCCCceecCCCCCCChhhhcCCCeEEcccCccc
Q 029867 108 AVYC-KCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDCSSD 159 (186)
Q Consensus 108 ~~~C-~C~~~~~~~~~~i~C~~C~~W~H~~Cv~~~~~~~~~~~~~~C~~C~~~ 159 (186)
...| +|...--++ +.|..|+.-||..|+.--... -..-.||.|...
T Consensus 180 i~~C~iC~~iv~~g---~~C~~C~~~~H~~C~~~~~~~---~~~~~CP~C~~~ 226 (238)
T 3nw0_A 180 VKICNICHSLLIQG---QSCETCGIRMHLPCVAKYFQS---NAEPRCPHCNDY 226 (238)
T ss_dssp CCBCTTTCSBCSSC---EECSSSCCEECHHHHHHHTTT---CSSCBCTTTCCB
T ss_pred CCcCcchhhHHhCC---cccCccChHHHHHHHHHHHHh---CCCCCCCCCCCC
Confidence 4456 888765543 899999999999999432111 124589999764
No 89
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=45.80 E-value=13 Score=22.00 Aligned_cols=13 Identities=23% Similarity=0.652 Sum_probs=10.4
Q ss_pred CCeEEcccCcccc
Q 029867 148 LDHFLCSDCSSDV 160 (186)
Q Consensus 148 ~~~~~C~~C~~~~ 160 (186)
.+.|.||.|....
T Consensus 34 P~dw~CP~Cg~~K 46 (54)
T 4rxn_A 34 PDDWVCPLCGVGK 46 (54)
T ss_dssp CTTCBCTTTCCBG
T ss_pred CCCCcCcCCCCcH
Confidence 4789999998754
No 90
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=44.90 E-value=3.3 Score=25.56 Aligned_cols=49 Identities=18% Similarity=0.541 Sum_probs=31.4
Q ss_pred cceEE-ecCCCCCCCCceEeCCCCCceecCCCCCCChhhhcCCCeEEcccCccccc
Q 029867 107 VAVYC-KCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDCSSDVD 161 (186)
Q Consensus 107 ~~~~C-~C~~~~~~~~~~i~C~~C~~W~H~~Cv~~~~~~~~~~~~~~C~~C~~~~~ 161 (186)
....| ||-..+.... .+..-.|+-.||..|+..-... ...||.|+....
T Consensus 22 ~~~~C~IC~~~~~~~~-~~~~l~C~H~fh~~Ci~~w~~~-----~~~CP~Cr~~~~ 71 (75)
T 1x4j_A 22 EQTLCVVCMCDFESRQ-LLRVLPCNHEFHAKCVDKWLKA-----NRTCPICRADSG 71 (75)
T ss_dssp SCCEETTTTEECCBTC-EEEEETTTEEEETTHHHHHHHH-----CSSCTTTCCCCC
T ss_pred CCCCCeECCcccCCCC-eEEEECCCCHhHHHHHHHHHHc-----CCcCcCcCCcCC
Confidence 34567 8887665333 3444459889999998543322 237999986544
No 91
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=43.10 E-value=5.2 Score=24.05 Aligned_cols=48 Identities=21% Similarity=0.436 Sum_probs=30.2
Q ss_pred ceEE-ecCCCCCCCCceEeCCCCCceecCCCCCCChhhhcCCCeEEcccCccccc
Q 029867 108 AVYC-KCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDCSSDVD 161 (186)
Q Consensus 108 ~~~C-~C~~~~~~~~~~i~C~~C~~W~H~~Cv~~~~~~~~~~~~~~C~~C~~~~~ 161 (186)
...| ||...+..+.. +..-.|+-.||..|+..-... ...||.|+....
T Consensus 14 ~~~C~IC~~~~~~~~~-~~~~~C~H~fc~~Ci~~~~~~-----~~~CP~Cr~~~~ 62 (69)
T 2kiz_A 14 EEKCTICLSILEEGED-VRRLPCMHLFHQVCVDQWLIT-----NKKCPICRVDIE 62 (69)
T ss_dssp CCSBTTTTBCCCSSSC-EEECTTSCEEEHHHHHHHHHH-----CSBCTTTCSBSC
T ss_pred CCCCeeCCccccCCCc-EEEeCCCCHHHHHHHHHHHHc-----CCCCcCcCcccc
Confidence 4456 78776643333 333469989999998543322 225999987655
No 92
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=41.97 E-value=11 Score=21.57 Aligned_cols=35 Identities=17% Similarity=0.352 Sum_probs=18.7
Q ss_pred EeCCCCCceecCCCCCC-ChhhhcCCCeEEcccCcccc
Q 029867 124 VQCEGCKDWFHPSCMGM-TIEEAKKLDHFLCSDCSSDV 160 (186)
Q Consensus 124 i~C~~C~~W~H~~Cv~~-~~~~~~~~~~~~C~~C~~~~ 160 (186)
.+|..|+--|... .|- +.-. +..+.|.||.|....
T Consensus 5 y~C~vCGyvyd~~-~Gd~t~f~-~lP~dw~CP~Cg~~k 40 (46)
T 6rxn_A 5 YVCNVCGYEYDPA-EHDNVPFD-QLPDDWCCPVCGVSK 40 (46)
T ss_dssp EEETTTCCEECGG-GGTTCCGG-GSCTTCBCTTTCCBG
T ss_pred EECCCCCeEEeCC-cCCCcchh-hCCCCCcCcCCCCcH
Confidence 4677776444421 111 1111 123679999998653
No 93
>2cr8_A MDM4 protein; ZF-ranbp domain, P53-binding protein MDM4, MDM2-like P53-binding DE protein, MDMX protein, double minute 4 protein; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=39.78 E-value=31 Score=20.14 Aligned_cols=28 Identities=14% Similarity=0.302 Sum_probs=18.7
Q ss_pred CeEEcccCccccc---------cccccCCCCCCCCcc
Q 029867 149 DHFLCSDCSSDVD---------AKRSLNTFSVSPSVE 176 (186)
Q Consensus 149 ~~~~C~~C~~~~~---------~~~~~~~~~~~~~~~ 176 (186)
|.|.|..|..... .+.+.+|.....+..
T Consensus 10 D~WkC~~C~k~N~Pl~ryC~rCwaLRk~Wlpd~~k~~ 46 (53)
T 2cr8_A 10 DEWQCTECKKFNSPSKRYCFRCWALRKDWYSDCSKLT 46 (53)
T ss_dssp CCEECSSSCCEECSSCCBCTTTCCBCCCCCCCCCCCS
T ss_pred ceeecccccccCCCccchhHHHHHhhcccCCCcccCc
Confidence 6788888886555 346677776665543
No 94
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=38.81 E-value=21 Score=24.16 Aligned_cols=29 Identities=21% Similarity=0.291 Sum_probs=23.0
Q ss_pred EeCCCCCceecCCCCCCChhhhcCCCeEEc
Q 029867 124 VQCEGCKDWFHPSCMGMTIEEAKKLDHFLC 153 (186)
Q Consensus 124 i~C~~C~~W~H~~Cv~~~~~~~~~~~~~~C 153 (186)
+.|..|-.-||..|+.-....... +.|.|
T Consensus 70 ~~C~~Cp~sfC~~c~~g~l~~~~~-~~~~c 98 (107)
T 4gne_A 70 SFCEFCPHSFCKDHEKGALVPSAL-EGRLC 98 (107)
T ss_dssp EECSSSSCEECTTTCTTSCEECTT-TTCEE
T ss_pred cCcCCCCcchhhhccCCcceecCC-CCcee
Confidence 899999999999999766654333 67876
No 95
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=35.84 E-value=38 Score=19.68 Aligned_cols=13 Identities=23% Similarity=0.685 Sum_probs=10.4
Q ss_pred CCeEEcccCcccc
Q 029867 148 LDHFLCSDCSSDV 160 (186)
Q Consensus 148 ~~~~~C~~C~~~~ 160 (186)
.+.|.||.|....
T Consensus 33 P~dw~CP~Cg~~K 45 (52)
T 1yk4_A 33 PDDWVCPLCGAPK 45 (52)
T ss_dssp CTTCBCTTTCCBG
T ss_pred CCCCcCCCCCCCH
Confidence 3789999998754
No 96
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=35.12 E-value=7.9 Score=24.40 Aligned_cols=47 Identities=19% Similarity=0.445 Sum_probs=30.9
Q ss_pred ceEE-ecCCCCCCCCceEeCCCCCceecCCCCCCChhhhcCCCeEEcccCcccc
Q 029867 108 AVYC-KCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDCSSDV 160 (186)
Q Consensus 108 ~~~C-~C~~~~~~~~~~i~C~~C~~W~H~~Cv~~~~~~~~~~~~~~C~~C~~~~ 160 (186)
...| ||.....++ +.|..|..-||..|+.-=.... ..=.||.|...-
T Consensus 15 i~~C~IC~~~i~~g---~~C~~C~h~fH~~Ci~kWl~~~---~~~~CP~Cr~~w 62 (74)
T 2ct0_A 15 VKICNICHSLLIQG---QSCETCGIRMHLPCVAKYFQSN---AEPRCPHCNDYW 62 (74)
T ss_dssp SCBCSSSCCBCSSS---EECSSSCCEECHHHHHHHSTTC---SSCCCTTTCSCC
T ss_pred CCcCcchhhHcccC---CccCCCCchhhHHHHHHHHHhc---CCCCCCCCcCcC
Confidence 3455 888776543 6889999999999995211111 113799998553
No 97
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=34.77 E-value=10 Score=26.09 Aligned_cols=30 Identities=17% Similarity=0.391 Sum_probs=0.0
Q ss_pred CCCCceecCCCCCCChhhhcCCCeEEcccCccccc
Q 029867 127 EGCKDWFHPSCMGMTIEEAKKLDHFLCSDCSSDVD 161 (186)
Q Consensus 127 ~~C~~W~H~~Cv~~~~~~~~~~~~~~C~~C~~~~~ 161 (186)
..|+-.||..|+..=... .-.||.|+..-.
T Consensus 82 ~~C~H~FH~~CI~~Wl~~-----~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 82 GVCNHAFHFHCISRWLKT-----RQVCPLDNREWE 111 (117)
T ss_dssp -----------------------------------
T ss_pred CCcCceEcHHHHHHHHHc-----CCcCCCCCCeee
Confidence 368899999998654332 357999987643
No 98
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=34.17 E-value=37 Score=19.71 Aligned_cols=13 Identities=23% Similarity=0.667 Sum_probs=10.3
Q ss_pred CCeEEcccCcccc
Q 029867 148 LDHFLCSDCSSDV 160 (186)
Q Consensus 148 ~~~~~C~~C~~~~ 160 (186)
.+.|.||.|....
T Consensus 34 P~dw~CP~Cg~~K 46 (52)
T 1e8j_A 34 PDDWACPVCGASK 46 (52)
T ss_dssp CTTCCCSSSCCCT
T ss_pred CCCCcCCCCCCcH
Confidence 3689999998653
No 99
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=32.26 E-value=39 Score=21.96 Aligned_cols=40 Identities=23% Similarity=0.498 Sum_probs=21.9
Q ss_pred CceEeCCCCCceecCCCCCCChhh-------hcCCCeEEcccCccccc
Q 029867 121 DLMVQCEGCKDWFHPSCMGMTIEE-------AKKLDHFLCSDCSSDVD 161 (186)
Q Consensus 121 ~~~i~C~~C~~W~H~~Cv~~~~~~-------~~~~~~~~C~~C~~~~~ 161 (186)
....+|..|+--|-. =.|-+... .+..+.|.||.|.....
T Consensus 33 m~~y~C~vCGyvYD~-~~Gdp~~gI~pGT~fedlPddW~CPvCga~K~ 79 (87)
T 1s24_A 33 YLKWICITCGHIYDE-ALGDEAEGFTPGTRFEDIPDDWCCPDCGATKE 79 (87)
T ss_dssp CCEEEETTTTEEEET-TSCCTTTTCCSCCCGGGCCTTCCCSSSCCCGG
T ss_pred CceEECCCCCeEecC-CcCCcccCcCCCCChhHCCCCCCCCCCCCCHH
Confidence 456777777744443 22222110 11236899999987543
No 100
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=32.15 E-value=7.1 Score=24.53 Aligned_cols=52 Identities=15% Similarity=0.376 Sum_probs=33.4
Q ss_pred cceEE-ecCCCCCCCCc-eEeCCCCCceecCCCCCCChhhhcCCCeEEcccCccccc
Q 029867 107 VAVYC-KCEMPYNPDDL-MVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDCSSDVD 161 (186)
Q Consensus 107 ~~~~C-~C~~~~~~~~~-~i~C~~C~~W~H~~Cv~~~~~~~~~~~~~~C~~C~~~~~ 161 (186)
....| +|...+..... .+.- .|+-.||..|+..-.... .....||.|.....
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~-~CgH~fC~~Ci~~~~~~~--~~~~~CP~Cr~~~~ 67 (88)
T 2ct2_A 14 EVLECPICMESFTEEQLRPKLL-HCGHTICRQCLEKLLASS--INGVRCPFCSKITR 67 (88)
T ss_dssp SCCBCTTTCCBCCTTSSCEEEC-SSSCEEEHHHHHHHHHHC--SSCBCCTTTCCCBC
T ss_pred CCCCCccCCccccccCCCeEEC-CCCChhhHHHHHHHHHcC--CCCcCCCCCCCccc
Confidence 34567 88777654332 3332 699999999986443321 13579999998765
No 101
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.97 E-value=1.6 Score=27.85 Aligned_cols=36 Identities=28% Similarity=0.575 Sum_probs=23.6
Q ss_pred CceEeCCCCCceecCCCCCCChhhhcCCCeEEcccCccccc
Q 029867 121 DLMVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDCSSDVD 161 (186)
Q Consensus 121 ~~~i~C~~C~~W~H~~Cv~~~~~~~~~~~~~~C~~C~~~~~ 161 (186)
+..+.-..|+-.||..|+..=... .-.||.|+....
T Consensus 40 ~~~~~~~~C~H~FH~~Ci~~Wl~~-----~~~CP~CR~~~~ 75 (81)
T 2ecl_A 40 DCVVVWGECNHSFHNCCMSLWVKQ-----NNRCPLCQQDWV 75 (81)
T ss_dssp TCCEEEETTSCEEEHHHHHHHTTT-----CCBCTTTCCBCC
T ss_pred ceEEEeCCCCCccChHHHHHHHHh-----CCCCCCcCCCcc
Confidence 334444479999999998532221 238999997655
No 102
>2yuu_A NPKC-delta, protein kinase C delta type; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.85 E-value=30 Score=21.92 Aligned_cols=34 Identities=18% Similarity=0.482 Sum_probs=24.8
Q ss_pred cceEE-ecCCCCC-CCCceEeCCCCCceecCCCCCC
Q 029867 107 VAVYC-KCEMPYN-PDDLMVQCEGCKDWFHPSCMGM 140 (186)
Q Consensus 107 ~~~~C-~C~~~~~-~~~~~i~C~~C~~W~H~~Cv~~ 140 (186)
.+.+| .|+...- -...-++|..|+.-.|..|+..
T Consensus 27 ~pt~C~~C~~~lwGl~kqg~~C~~C~~~~Hk~C~~~ 62 (83)
T 2yuu_A 27 QPTFCSVCKDFVWGLNKQGYKCRQCNAAIHKKCIDK 62 (83)
T ss_dssp SCCCCSSSCCCCCSSSCCEEEETTTCCEECTTGGGT
T ss_pred CCcChhhcChhhccccccccccCCcCCeeChhhhhh
Confidence 35677 7776431 1346789999999999999864
No 103
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=30.52 E-value=9.4 Score=31.70 Aligned_cols=54 Identities=17% Similarity=0.354 Sum_probs=33.2
Q ss_pred ceEE-ecCCCCCCCC--ceEeCC--CCCceecCCCCCCChh------hhcCCCeEEcccCccccc
Q 029867 108 AVYC-KCEMPYNPDD--LMVQCE--GCKDWFHPSCMGMTIE------EAKKLDHFLCSDCSSDVD 161 (186)
Q Consensus 108 ~~~C-~C~~~~~~~~--~~i~C~--~C~~W~H~~Cv~~~~~------~~~~~~~~~C~~C~~~~~ 161 (186)
...| ||=....+++ .-..|+ .|+.-||..|+--=.. ..=..-.-.||.|.....
T Consensus 308 ~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 308 ELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp CCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred CccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence 4456 7765554433 345798 8999999999942111 010112578999998655
No 104
>2fnf_X Putative RAS effector NORE1; zinc, signal transduction, apoptosis, cysteine rich domain; NMR {Mus musculus}
Probab=28.68 E-value=25 Score=21.79 Aligned_cols=31 Identities=23% Similarity=0.494 Sum_probs=23.4
Q ss_pred cceEE-ecCCCCCCCCceEeCCCCCceecCCCCC
Q 029867 107 VAVYC-KCEMPYNPDDLMVQCEGCKDWFHPSCMG 139 (186)
Q Consensus 107 ~~~~C-~C~~~~~~~~~~i~C~~C~~W~H~~Cv~ 139 (186)
...+| .|+... ...-++|..|+--.|..|..
T Consensus 34 ~pt~C~~C~~~l--~~qG~kC~~C~~~cHkkC~~ 65 (72)
T 2fnf_X 34 GPGWCDLCGREV--LRQALRCANCKFTCHSECRS 65 (72)
T ss_dssp SCCBCTTTSSBC--SSCCEECTTSSCEECTGGGG
T ss_pred CCcchhhhhHHH--HhCcCccCCCCCeechhhhc
Confidence 45677 666654 45567999999999999974
No 105
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=28.43 E-value=24 Score=29.03 Aligned_cols=35 Identities=23% Similarity=0.461 Sum_probs=26.5
Q ss_pred CCcceEE-ecCCCCC-CCCceEeCCCCCceecCCCCC
Q 029867 105 DRVAVYC-KCEMPYN-PDDLMVQCEGCKDWFHPSCMG 139 (186)
Q Consensus 105 ~~~~~~C-~C~~~~~-~~~~~i~C~~C~~W~H~~Cv~ 139 (186)
.....+| .|+.... -...-..|..|+..+|..|..
T Consensus 354 ~~~~t~C~~C~~~~~g~~~qg~~C~~C~~~~h~~C~~ 390 (406)
T 2vrw_B 354 FEETTSCKACQMLLRGTFYQGYRCYRCRAPAHKECLG 390 (406)
T ss_dssp CSSCCBCTTTCCBCCSSSSCEEEETTTCCEECGGGGG
T ss_pred CCCCCCCccccchhceeCCCCCCCCCCcCccchhhhh
Confidence 4467788 7776553 245678899999999999975
No 106
>2l9z_A PR domain zinc finger protein 4; zinc-binding domain, transcription; NMR {Homo sapiens}
Probab=27.35 E-value=18 Score=19.84 Aligned_cols=20 Identities=15% Similarity=0.436 Sum_probs=16.9
Q ss_pred CCceEeCCCCCceecCCCCC
Q 029867 120 DDLMVQCEGCKDWFHPSCMG 139 (186)
Q Consensus 120 ~~~~i~C~~C~~W~H~~Cv~ 139 (186)
...++-|+.|++.|=.+|-.
T Consensus 8 ~~~yl~CE~C~~~~~~~Cp~ 27 (39)
T 2l9z_A 8 TLFTIWCTLCDRAYPSDCPE 27 (39)
T ss_dssp CSCSEEEGGGTEEESSSBTT
T ss_pred hhhhhHHHHHhhhchhhchh
Confidence 35789999999999999964
No 107
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=26.85 E-value=23 Score=18.81 Aligned_cols=13 Identities=23% Similarity=0.935 Sum_probs=10.2
Q ss_pred CeEEcccCccccc
Q 029867 149 DHFLCSDCSSDVD 161 (186)
Q Consensus 149 ~~~~C~~C~~~~~ 161 (186)
+.|+||.|.....
T Consensus 4 EGFiCP~C~~~l~ 16 (34)
T 3mjh_B 4 EGFICPQCMKSLG 16 (34)
T ss_dssp EEEECTTTCCEES
T ss_pred cccCCcHHHHHcC
Confidence 4699999987655
No 108
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=26.61 E-value=17 Score=21.99 Aligned_cols=51 Identities=22% Similarity=0.469 Sum_probs=32.5
Q ss_pred EE-ecCCCCCCCCceEeCCCCCceecCCCCCCChhhhcCCCeEEcccCccccc
Q 029867 110 YC-KCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDCSSDVD 161 (186)
Q Consensus 110 ~C-~C~~~~~~~~~~i~C~~C~~W~H~~Cv~~~~~~~~~~~~~~C~~C~~~~~ 161 (186)
.| +|...-=.++-=-.|-.|+.-+-..|-|-....... ..|.|..|.+.++
T Consensus 11 ~C~iC~KTKFADG~Gh~C~yCk~r~CaRCGg~v~lr~~k-~~WvC~lC~k~qe 62 (62)
T 2a20_A 11 TCGICHKTKFADGCGHNCSYCQTKFCARCGGRVSLRSNK-VMWVCNLCRKQQE 62 (62)
T ss_dssp CCSSSSCSCCCSSCCEEBTTTCCEECTTSEEEEESSTTC-EEEEEHHHHHHTC
T ss_pred hhhhhccceeccCCCccccccCCeeecccCCEeeecCCe-EEEEehhhhhccC
Confidence 44 566544445555667778887877886643323222 5899999987653
No 109
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=26.52 E-value=69 Score=18.73 Aligned_cols=14 Identities=21% Similarity=0.603 Sum_probs=10.9
Q ss_pred CCeEEcccCccccc
Q 029867 148 LDHFLCSDCSSDVD 161 (186)
Q Consensus 148 ~~~~~C~~C~~~~~ 161 (186)
.+.|.||.|.....
T Consensus 34 P~dw~CP~Cga~K~ 47 (55)
T 2v3b_B 34 PADWVCPDCGVGKI 47 (55)
T ss_dssp CTTCCCTTTCCCGG
T ss_pred CCCCcCCCCCCCHH
Confidence 36899999987543
No 110
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=25.40 E-value=29 Score=19.97 Aligned_cols=42 Identities=17% Similarity=0.395 Sum_probs=23.7
Q ss_pred CCceEeCCCCCceecCCCCCCChhhhcCCCeEEcccCccccccc
Q 029867 120 DDLMVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDCSSDVDAK 163 (186)
Q Consensus 120 ~~~~i~C~~C~~W~H~~Cv~~~~~~~~~~~~~~C~~C~~~~~~~ 163 (186)
++....|+.|+.-|-..-. +..... ....|.|+.|......+
T Consensus 11 ~~k~~~C~~C~k~F~~~~~-l~~~H~-~~k~~~C~~C~k~f~~~ 52 (62)
T 1vd4_A 11 NRASFKCPVCSSTFTDLEA-NQLFDP-MTGTFRCTFCHTEVEED 52 (62)
T ss_dssp SSSEEECSSSCCEEEHHHH-HHHEET-TTTEEBCSSSCCBCEEC
T ss_pred CCCCccCCCCCchhccHHH-hHhhcC-CCCCEECCCCCCccccC
Confidence 4556789999876632110 001111 12479999998766543
No 111
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=24.89 E-value=72 Score=19.69 Aligned_cols=14 Identities=36% Similarity=0.883 Sum_probs=11.4
Q ss_pred CCeEEcccCccccc
Q 029867 148 LDHFLCSDCSSDVD 161 (186)
Q Consensus 148 ~~~~~C~~C~~~~~ 161 (186)
.+.|.||.|.....
T Consensus 38 Pddw~CP~Cga~K~ 51 (70)
T 1dx8_A 38 SDSFMCPACRSPKN 51 (70)
T ss_dssp CTTCBCTTTCCBGG
T ss_pred CCCCcCCCCCCCHH
Confidence 36899999997655
No 112
>4b6d_A RAC GTPase-activating protein 1; signaling protein, cytokinesis, plasma membrane, phospholipi centralspindlin, spindle midzone, central spindle; 2.20A {Homo sapiens}
Probab=24.60 E-value=30 Score=20.71 Aligned_cols=32 Identities=25% Similarity=0.627 Sum_probs=24.3
Q ss_pred ceEE-ecCCCCCCCCceEeCCCCCceecCCCCC
Q 029867 108 AVYC-KCEMPYNPDDLMVQCEGCKDWFHPSCMG 139 (186)
Q Consensus 108 ~~~C-~C~~~~~~~~~~i~C~~C~~W~H~~Cv~ 139 (186)
...| .|+....-+.....|..|...-|..|-.
T Consensus 19 ~~~C~~Cg~~i~~gkq~~kC~dC~~~cH~~C~~ 51 (61)
T 4b6d_A 19 PESCVPCGKRIKFGKLSLKCRDCRVVSHPECRD 51 (61)
T ss_dssp CEECTTTCCEECTTCEEEEESSSSCEECGGGGG
T ss_pred CcccccccCEEEEeeEeeECCCCCCeEchhHhh
Confidence 4567 6766554456789999999999999953
No 113
>4hae_A CDY-like 2, chromodomain Y-like protein 2; protein binding, structural genomics consortiu; 2.00A {Homo sapiens}
Probab=23.80 E-value=1.2e+02 Score=19.01 Aligned_cols=32 Identities=16% Similarity=0.175 Sum_probs=22.6
Q ss_pred CCCCCCeEEEEeEEeecCCCCEEEEEEEEecc
Q 029867 5 DSDKPPYVARVEKIEADHRNNVKVRVRWYYRP 36 (186)
Q Consensus 5 ~~~~~~~iarI~~i~~~~~~~~~v~v~Wfyrp 36 (186)
+.++.+-|-+|+.-....+|.....|.|---|
T Consensus 19 ~~~e~yeVE~Ild~R~~~~g~~~YlVKWkGy~ 50 (81)
T 4hae_A 19 ASGDLYEVERIVDKRKNKKGKWEYLIRWKGYG 50 (81)
T ss_dssp TTSCEEEEEEEEEEEECTTSCEEEEEEETTCC
T ss_pred CCCCEEEEEEEEEeEECCCCeEEEEEEECCCC
Confidence 33455667778777666677888899996554
No 114
>2lk0_A RNA-binding protein 5; zinc finger; NMR {Homo sapiens} PDB: 2lk1_A*
Probab=23.25 E-value=38 Score=17.43 Aligned_cols=14 Identities=21% Similarity=0.728 Sum_probs=10.4
Q ss_pred CCeEEcccCccccc
Q 029867 148 LDHFLCSDCSSDVD 161 (186)
Q Consensus 148 ~~~~~C~~C~~~~~ 161 (186)
...|+|+.|....-
T Consensus 3 ~gDW~C~~C~~~Nf 16 (32)
T 2lk0_A 3 FEDWLCNKCCLNNF 16 (32)
T ss_dssp CSEEECTTTCCEEE
T ss_pred CCCCCcCcCcCCcC
Confidence 36799999976544
No 115
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=22.14 E-value=52 Score=16.24 Aligned_cols=13 Identities=31% Similarity=0.820 Sum_probs=8.8
Q ss_pred CceEeCCCCCcee
Q 029867 121 DLMVQCEGCKDWF 133 (186)
Q Consensus 121 ~~~i~C~~C~~W~ 133 (186)
++-+||..|....
T Consensus 4 ef~vqcpvcqq~m 16 (29)
T 3vhs_A 4 EFQVQCPVCQQMM 16 (29)
T ss_dssp -CEEECTTTCCEE
T ss_pred ceeeeChHHHHhC
Confidence 5778888887643
No 116
>2jwo_A RAG-2, V(D)J recombination-activating protein 2; phosphoinositide signaling, PHD domain, DNA recombination, DNA-binding, endonuclease, hydrolase; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 2v83_A* 2v85_A* 2v86_A* 2v87_A* 2v88_A* 2v89_A*
Probab=21.95 E-value=52 Score=20.82 Aligned_cols=34 Identities=21% Similarity=0.664 Sum_probs=22.5
Q ss_pred ceEeCCC-CCceecCCCCCCChhhh----cCCCeEEccc
Q 029867 122 LMVQCEG-CKDWFHPSCMGMTIEEA----KKLDHFLCSD 155 (186)
Q Consensus 122 ~~i~C~~-C~~W~H~~Cv~~~~~~~----~~~~~~~C~~ 155 (186)
-||.|.. =+-|.|..|+.+++... +...+|+|..
T Consensus 37 ami~cs~g~ghwvhaqcm~l~e~~l~~lsq~n~ky~c~~ 75 (82)
T 2jwo_A 37 AMIYCSHGDGHWVHAQCMDLEERTLIHLSEGSNKYYCNE 75 (82)
T ss_dssp CCEECCSSSCCEECSGGGTCCHHHHHHHTTSSCCCCCST
T ss_pred hhhhcCCCcchHHHHHHhhHHHHHHHHHhcCCcEEEEcC
Confidence 3777742 37899999999987532 2234677653
No 117
>1ovx_A ATP-dependent CLP protease ATP-binding subunit CL; treble CLEF zinc finger, homodimer, metal binding protein; NMR {Escherichia coli} SCOP: g.39.1.11
Probab=21.62 E-value=32 Score=21.26 Aligned_cols=13 Identities=15% Similarity=0.777 Sum_probs=9.9
Q ss_pred CeEEcccCccccc
Q 029867 149 DHFLCSDCSSDVD 161 (186)
Q Consensus 149 ~~~~C~~C~~~~~ 161 (186)
..|+|..|...--
T Consensus 39 gvyICdeCI~~c~ 51 (67)
T 1ovx_A 39 SVYICDECVDLCN 51 (67)
T ss_dssp SCEEEHHHHHHHH
T ss_pred CCChhHHHHHHHH
Confidence 4799999986543
No 118
>2db6_A SH3 and cysteine rich domain 3; STAC3, C1 domain, cystein-rich domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.17 E-value=48 Score=20.43 Aligned_cols=32 Identities=22% Similarity=0.588 Sum_probs=23.6
Q ss_pred cceEE-ecCCCCCCC--CceEeCCCCCceecCCCCC
Q 029867 107 VAVYC-KCEMPYNPD--DLMVQCEGCKDWFHPSCMG 139 (186)
Q Consensus 107 ~~~~C-~C~~~~~~~--~~~i~C~~C~~W~H~~Cv~ 139 (186)
...+| .|+... .+ ..-++|..|+.-.|..|+.
T Consensus 27 ~pt~C~~C~~~l-wGl~kqG~~C~~C~~~~Hk~C~~ 61 (74)
T 2db6_A 27 KPKFCDVCARMI-VLNNKFGLRCKNCKTNIHEHCQS 61 (74)
T ss_dssp SCEECSSSCCEE-CHHHHEEEEESSSCCEECTTTTG
T ss_pred CCcCchhcChhh-ccccCCccccCCCCCccChhHHh
Confidence 46677 676543 12 3568999999999999986
No 119
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=20.68 E-value=49 Score=14.71 Aligned_cols=11 Identities=36% Similarity=0.769 Sum_probs=7.0
Q ss_pred EeCCCCCceec
Q 029867 124 VQCEGCKDWFH 134 (186)
Q Consensus 124 i~C~~C~~W~H 134 (186)
..|+.|+..|.
T Consensus 4 ~~C~~C~~~f~ 14 (30)
T 2m0d_A 4 YQCDYCGRSFS 14 (30)
T ss_dssp EECTTTCCEES
T ss_pred ccCCCCCcccC
Confidence 46777776653
No 120
>2e2z_A TIM15; protein import, zinc finger, protein transport, chaperone regulator; NMR {Saccharomyces cerevisiae}
Probab=20.15 E-value=48 Score=22.15 Aligned_cols=18 Identities=22% Similarity=0.669 Sum_probs=13.9
Q ss_pred CCCCCCceEeCCCCCcee
Q 029867 116 PYNPDDLMVQCEGCKDWF 133 (186)
Q Consensus 116 ~~~~~~~~i~C~~C~~W~ 133 (186)
.|.-+-..|+|++|..|.
T Consensus 31 aY~~GvViv~C~gC~n~H 48 (100)
T 2e2z_A 31 AYEKGTVLISCPHCKVRH 48 (100)
T ss_dssp HHHTSEEEEECTTTCCEE
T ss_pred HhhCCEEEEEcCCCccce
Confidence 455577999999998753
No 121
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=20.03 E-value=39 Score=23.25 Aligned_cols=57 Identities=18% Similarity=0.422 Sum_probs=35.5
Q ss_pred ccCCCcceEE-ecCCCCCCCCceEeCCCCCceecCCCCCCChhhh-cCCCeEEcccCcc
Q 029867 102 FTPDRVAVYC-KCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEEA-KKLDHFLCSDCSS 158 (186)
Q Consensus 102 f~p~~~~~~C-~C~~~~~~~~~~i~C~~C~~W~H~~Cv~~~~~~~-~~~~~~~C~~C~~ 158 (186)
+.|+.....| .|+.+......---|-.|+..|=..|......-+ .....-+|..|..
T Consensus 63 W~~d~~~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~~~~~p~~~~p~RVC~~C~~ 121 (125)
T 1joc_A 63 WAEDNEVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKNALTPSSKKPVRVCDACFN 121 (125)
T ss_dssp CCCGGGCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEECCTTCSSCEEECHHHHH
T ss_pred cccCCCCCCCcCcCCccccccccccCCCCCeEEChHHhCCccccCCCCCCCEeCHHHHH
Confidence 4455566677 7888776556667888888888888865321111 1113567777754
Done!