BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029868
(186 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3J2I|B Chain B, Structure Of Late Pre-60s Ribosomal Subunits With Nuclear
Export Factor Arx1 Bound At The Peptide Exit Tunnel
Length = 245
Score = 230 bits (587), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 107/152 (70%), Positives = 132/152 (86%)
Query: 34 QTKRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYC 93
+ +R+EERLSALGN I CND+VAL H D+DRETEE+I+DVLGVEVFRQTI+GNILVGSYC
Sbjct: 93 KIQRVEERLSALGNVICCNDYVALVHPDIDRETEELISDVLGVEVFRQTISGNILVGSYC 152
Query: 94 SFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTA 153
S SN+GGLVHP TS++D +ELS+LLQVPLVAGTVNRGS V+GAG+ VND+ A G DTTA
Sbjct: 153 SLSNQGGLVHPQTSVQDQEELSSLLQVPLVAGTVNRGSSVVGAGMVVNDYLAVTGLDTTA 212
Query: 154 TELSVIESVFKLREAQPNAIVDEMRKSLIDSY 185
ELSVIES+F+L++AQP +I +R +LI++Y
Sbjct: 213 PELSVIESIFRLQDAQPESISGNLRDTLIETY 244
Score = 27.3 bits (59), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 32/75 (42%)
Query: 76 VEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIG 135
+ + TIAG ++G + + RG LV T+ ++L L L + V +G
Sbjct: 46 IPIVHTTIAGTRIIGRMTAGNRRGLLVPTQTTDQELQHLRNSLPDSVKIQRVEERLSALG 105
Query: 136 AGLTVNDWTAFCGSD 150
+ ND+ A D
Sbjct: 106 NVICCNDYVALVHPD 120
>pdb|4A18|J Chain J, T.Thermophila 60s Ribosomal Subunit In Complex With
Initiation Factor 6. This File Contains 26s Rrna And
Proteins Of Molecule 1
pdb|4A1B|J Chain J, T.Thermophila 60s Ribosomal Subunit In Complex With
Initiation Factor 6. This File Contains 26s Rrna And
Proteins Of Molecule 3.
pdb|4A1D|J Chain J, T.Thermophila 60s Ribosomal Subunit In Complex With
Initiation Factor 6. This File Contains 26s Rrna And
Proteins Of Molecule 4.
pdb|4A19|J Chain J, T.Thermophila 60s Ribosomal Subunit In Complex With
Initiation Factor 6. This File Contains 26s Rrna And
Proteins Of Molecule 2
Length = 248
Score = 219 bits (558), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 100/149 (67%), Positives = 124/149 (83%)
Query: 34 QTKRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYC 93
+ +RIEE+LSALGNC+ ND+VAL H DLDRE+EEIIAD LGVEVFR TIA N+LVG+YC
Sbjct: 96 RVRRIEEKLSALGNCVVANDYVALIHPDLDRESEEIIADTLGVEVFRTTIANNVLVGTYC 155
Query: 94 SFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTA 153
+NRGGLVHP S+E+LDEL+ LLQ+PL AGT+NRGS+VIGAGL VNDW AFCG DTT+
Sbjct: 156 VINNRGGLVHPLASVEELDELANLLQIPLCAGTINRGSDVIGAGLVVNDWAAFCGLDTTS 215
Query: 154 TELSVIESVFKLREAQPNAIVDEMRKSLI 182
TE+SV+E++FKL E + + +EMRK +
Sbjct: 216 TEISVVENIFKLNEMKDENMDNEMRKDFV 244
>pdb|1G62|A Chain A, Crystal Structure Of S.Cerevisiae Eif6
pdb|2X7N|B Chain B, Mechanism Of Eif6s Anti-Association Activity
Length = 224
Score = 211 bits (537), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 99/132 (75%), Positives = 117/132 (88%)
Query: 34 QTKRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYC 93
+ +R+EERLSALGN I CND+VAL H D+DRETEE+I+DVLGVEVFRQTI+GNILVGSYC
Sbjct: 93 KIQRVEERLSALGNVICCNDYVALVHPDIDRETEELISDVLGVEVFRQTISGNILVGSYC 152
Query: 94 SFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTA 153
S SN+GGLVHP TS++D +ELS+LLQVPLVAGTVNRGS V+GAG+ VND+ A G DTTA
Sbjct: 153 SLSNQGGLVHPQTSVQDQEELSSLLQVPLVAGTVNRGSSVVGAGMVVNDYLAVTGLDTTA 212
Query: 154 TELSVIESVFKL 165
ELSVIES+F+L
Sbjct: 213 PELSVIESIFRL 224
Score = 27.3 bits (59), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 32/75 (42%)
Query: 76 VEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIG 135
+ + TIAG ++G + + RG LV T+ ++L L L + V +G
Sbjct: 46 IPIVHTTIAGTRIIGRMTAGNRRGLLVPTQTTDQELQHLRNSLPDSVKIQRVEERLSALG 105
Query: 136 AGLTVNDWTAFCGSD 150
+ ND+ A D
Sbjct: 106 NVICCNDYVALVHPD 120
>pdb|4ADX|I Chain I, The Cryo-Em Structure Of The Archaeal 50s Ribosomal
Subunit In Complex With Initiation Factor 6
Length = 222
Score = 83.6 bits (205), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 84/176 (47%), Gaps = 13/176 (7%)
Query: 5 LLKHQLVATGLSGGFVLVTKMGFSCHTQPQTK-------------RIEERLSALGNCIAC 51
+LK + + L+G + GF Q + RI ER +A+GN +
Sbjct: 46 VLKVSISGSSLNGALAVGNSNGFVVSNQAMDREIDALAAAGVEAVRIPERFTAVGNLVLA 105
Query: 52 NDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDL 111
ND+ A+A L + ++I DVL V+V T+AG +VGS + +NRG L++P S E++
Sbjct: 106 NDNGAVASPLLSDDALQVIGDVLEVDVKVSTLAGLNIVGSMGAATNRGALLNPQASSEEI 165
Query: 112 DELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATELSVIESVFKLRE 167
+ L V GTVN G +IGA N G +TT EL+ IE E
Sbjct: 166 GIIEDTLGVEADVGTVNHGVTLIGACSVANSNGVLVGEETTGPELARIEEALGFLE 221
Score = 30.0 bits (66), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 37/71 (52%)
Query: 45 LGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHP 104
LG I+ D VAL + + E ++ + L VEV + +I+G+ L G+ ++ G +V
Sbjct: 13 LGVYISVTDSVALIPQNTPEKFEGVLREALEVEVLKVSISGSSLNGALAVGNSNGFVVSN 72
Query: 105 HTSIEDLDELS 115
++D L+
Sbjct: 73 QAMDREIDALA 83
>pdb|1G61|A Chain A, Crystal Structure Of M.Jannaschii Eif6
pdb|1G61|B Chain B, Crystal Structure Of M.Jannaschii Eif6
Length = 228
Score = 71.6 bits (174), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/129 (37%), Positives = 70/129 (54%), Gaps = 2/129 (1%)
Query: 38 IEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSN 97
I+ + +ALGN I ND AL +L ++ ++ I D L VEV TIA VGS +N
Sbjct: 100 IKSKNTALGNLILTNDKGALISPEL-KDFKKDIEDSLNVEVEIGTIAELPTVGSNAVVTN 158
Query: 98 RGGLVHPHTSIEDLDELSTLLQVPLVA-GTVNRGSEVIGAGLTVNDWTAFCGSDTTATEL 156
+G L HP ++L+ L +L +V + GT N+G+ +GA + N A G DTT EL
Sbjct: 159 KGCLTHPLVEDDELEFLKSLFKVEYIGKGTANKGTTSVGACIIANSKGAVVGGDTTGPEL 218
Query: 157 SVIESVFKL 165
+IE L
Sbjct: 219 LIIEDALGL 227
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 53 DHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPH-TSIEDL 111
+ + L LD++ +++VL + + I G+ LVGS S +N+ GL+ P E+L
Sbjct: 23 EEITLLPIFLDKDDVNEVSEVLETKCLQTNIGGSSLVGSL-SVANKYGLLLPKIVEDEEL 81
Query: 112 DELSTLLQ 119
D + L+
Sbjct: 82 DRIKNFLK 89
>pdb|1HF2|A Chain A, Crystal Structure Of The Bacterial Cell-Division Inhibitor
Minc From T. Maritima
pdb|1HF2|B Chain B, Crystal Structure Of The Bacterial Cell-Division Inhibitor
Minc From T. Maritima
pdb|1HF2|C Chain C, Crystal Structure Of The Bacterial Cell-Division Inhibitor
Minc From T. Maritima
pdb|1HF2|D Chain D, Crystal Structure Of The Bacterial Cell-Division Inhibitor
Minc From T. Maritima
Length = 210
Score = 26.6 bits (57), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 53/118 (44%), Gaps = 21/118 (17%)
Query: 38 IEERLSALGNCIACNDHVALAHTDLDRETEEIIADV-----LGVEVFRQTIAGNILVGSY 92
I R++ +G A D ++L + ++ +++I V LG+EV + ILVGS
Sbjct: 28 ISARITQMGGFFAKGDRISLMIENHNKHSQDIPRIVSHLRNLGLEVSQ------ILVGST 81
Query: 93 CSFSNRGGLVHPHTSIEDLDEL--------STLLQVP--LVAGTVNRGSEVIGAGLTV 140
V T++E ++ T++ +V G VN+G+E++ G V
Sbjct: 82 VEGKENDLKVQSRTTVESTGKVIKRNIRSGQTVVHSGDVIVFGNVNKGAEILAGGSVV 139
>pdb|3N2Y|A Chain A, Crystal Structure Of Tyrosyl-Trna Synthetase Complexed
With P-(2- Tetrazolyl)-Phenylalanine
pdb|3N2Y|B Chain B, Crystal Structure Of Tyrosyl-Trna Synthetase Complexed
With P-(2- Tetrazolyl)-Phenylalanine
Length = 314
Score = 26.6 bits (57), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 5/48 (10%)
Query: 138 LTVNDWTAFCGSDTTATELSVIESVFKLREAQP----NAIVDEMRKSL 181
LT+ F G D T +ES+FK +E P NA+ +E+ K L
Sbjct: 253 LTIKRPEKF-GGDLTVNSYEELESLFKNKELHPMDLKNAVAEELIKIL 299
>pdb|1ZH6|A Chain A, Crystal Structure Of P-Acetylphenylalanine-Trna Synthetase
In Complex With P-Acetylphenylalanine
Length = 314
Score = 26.6 bits (57), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 5/48 (10%)
Query: 138 LTVNDWTAFCGSDTTATELSVIESVFKLREAQP----NAIVDEMRKSL 181
LT+ F G D T +ES+FK +E P NA+ +E+ K L
Sbjct: 253 LTIKRPEKF-GGDLTVNSYEELESLFKNKELHPMDLKNAVAEELIKIL 299
>pdb|2AG6|A Chain A, Crystal Structure Of P-Bromo-L-Phenylalanine-Trna
Sythetase In Complex With P-Bromo-L-Phenylalanine
Length = 314
Score = 26.6 bits (57), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 5/48 (10%)
Query: 138 LTVNDWTAFCGSDTTATELSVIESVFKLREAQP----NAIVDEMRKSL 181
LT+ F G D T +ES+FK +E P NA+ +E+ K L
Sbjct: 253 LTIKRPEKF-GGDLTVNSYEELESLFKNKELHPMDLKNAVAEELIKIL 299
>pdb|1J1U|A Chain A, Crystal Structure Of Archaeal Tyrosyl-Trna Synthetase
Complexed With Trna(Tyr) And L-Tyrosine
pdb|1U7D|A Chain A, Crystal Structure Of Apo M. Jannashii Tyrosyl-Trna
Synthetase
pdb|1U7D|B Chain B, Crystal Structure Of Apo M. Jannashii Tyrosyl-Trna
Synthetase
Length = 306
Score = 26.2 bits (56), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 5/48 (10%)
Query: 138 LTVNDWTAFCGSDTTATELSVIESVFKLREAQP----NAIVDEMRKSL 181
LT+ F G D T +ES+FK +E P NA+ +E+ K L
Sbjct: 253 LTIKRPEKF-GGDLTVNSYEELESLFKNKELHPMDLKNAVAEELIKIL 299
>pdb|1ZH0|A Chain A, Crystal Structure Of L-3-(2-Napthyl)alanine-Trna
Synthetase In Complex With L-3-(2-Napthyl)alanine
Length = 314
Score = 26.2 bits (56), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 5/48 (10%)
Query: 138 LTVNDWTAFCGSDTTATELSVIESVFKLREAQP----NAIVDEMRKSL 181
LT+ F G D T +ES+FK +E P NA+ +E+ K L
Sbjct: 253 LTIKRPEKF-GGDLTVNSYEELESLFKNKELHPMDLKNAVAEELIKIL 299
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,085,832
Number of Sequences: 62578
Number of extensions: 190982
Number of successful extensions: 520
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 507
Number of HSP's gapped (non-prelim): 22
length of query: 186
length of database: 14,973,337
effective HSP length: 93
effective length of query: 93
effective length of database: 9,153,583
effective search space: 851283219
effective search space used: 851283219
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)