Query 029868
Match_columns 186
No_of_seqs 105 out of 453
Neff 4.9
Searched_HMMs 46136
Date Fri Mar 29 04:55:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029868.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029868hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00136 eukaryotic translatio 100.0 2.9E-51 6.2E-56 352.7 21.0 173 12-185 63-246 (247)
2 COG1976 TIF6 Translation initi 100.0 1E-45 2.2E-50 311.8 15.7 158 8-165 50-221 (222)
3 PRK04046 translation initiatio 100.0 4.5E-40 9.8E-45 279.4 18.5 160 7-166 48-221 (222)
4 KOG3185 Translation initiation 100.0 1.7E-40 3.7E-45 278.0 14.8 173 13-186 64-245 (245)
5 TIGR00323 eIF-6 translation in 100.0 7.4E-40 1.6E-44 277.2 16.6 160 6-165 44-215 (215)
6 PF01912 eIF-6: eIF-6 family; 100.0 8.5E-41 1.9E-45 280.2 9.5 132 12-145 59-199 (199)
7 cd00527 IF6 Ribosome anti-asso 100.0 4.7E-39 1E-43 273.1 17.4 159 6-164 46-220 (220)
8 smart00654 eIF6 translation in 100.0 2.6E-37 5.6E-42 259.1 17.8 159 7-167 2-177 (200)
9 PRK04046 translation initiatio 100.0 4.8E-37 1E-41 260.9 17.7 160 6-167 3-177 (222)
10 smart00654 eIF6 translation in 100.0 3.1E-35 6.7E-40 246.6 14.7 132 13-145 60-200 (200)
11 PF01912 eIF-6: eIF-6 family; 100.0 2.8E-35 6E-40 247.0 9.4 126 40-167 6-132 (199)
12 COG1976 TIF6 Translation initi 100.0 2.5E-33 5.4E-38 236.7 15.3 127 40-167 9-178 (222)
13 cd00527 IF6 Ribosome anti-asso 100.0 3.8E-33 8.2E-38 237.0 16.5 159 7-167 3-178 (220)
14 PTZ00136 eukaryotic translatio 100.0 1.8E-32 3.9E-37 236.3 16.9 127 40-167 8-181 (247)
15 TIGR00323 eIF-6 translation in 100.0 2E-32 4.4E-37 231.9 16.9 156 8-167 2-172 (215)
16 KOG3185 Translation initiation 99.9 2.3E-22 5E-27 169.0 10.7 128 40-167 8-137 (245)
17 PRK14548 50S ribosomal protein 59.2 23 0.0005 26.2 4.7 46 56-123 4-50 (84)
18 cd01972 Nitrogenase_VnfE_like 58.5 21 0.00046 32.8 5.3 101 65-184 182-283 (426)
19 cd01974 Nitrogenase_MoFe_beta 47.4 1.1E+02 0.0024 28.2 8.2 99 65-184 177-293 (435)
20 PF09419 PGP_phosphatase: Mito 44.1 33 0.00071 28.3 3.8 66 15-82 40-113 (168)
21 CHL00073 chlN photochlorophyll 43.8 26 0.00056 33.4 3.5 95 64-185 207-305 (457)
22 COG0309 HypE Hydrogenase matur 43.8 44 0.00096 30.8 4.9 77 47-130 50-136 (339)
23 PF02274 Amidinotransf: Amidin 43.2 1.7E+02 0.0038 24.8 8.2 125 40-167 118-257 (281)
24 PF13167 GTP-bdg_N: GTP-bindin 43.0 71 0.0015 24.1 5.2 60 108-167 10-83 (95)
25 PTZ00191 60S ribosomal protein 42.8 45 0.00098 27.2 4.3 45 56-122 65-110 (145)
26 TIGR01286 nifK nitrogenase mol 41.2 63 0.0014 31.0 5.7 112 52-185 220-354 (515)
27 TIGR03636 L23_arch archaeal ri 38.8 46 0.001 24.2 3.4 28 96-123 15-43 (77)
28 cd01966 Nitrogenase_NifN_1 Nit 37.9 85 0.0018 29.0 5.9 69 96-185 223-291 (417)
29 cd01968 Nitrogenase_NifE_I Nit 35.9 89 0.0019 28.5 5.6 100 66-184 175-277 (410)
30 TIGR01862 N2-ase-Ialpha nitrog 35.9 53 0.0011 30.6 4.2 97 66-182 208-305 (443)
31 cd01967 Nitrogenase_MoFe_alpha 35.8 75 0.0016 28.6 5.1 99 65-183 176-275 (406)
32 COG2052 Uncharacterized protei 32.7 43 0.00094 25.0 2.5 59 45-106 10-69 (89)
33 TIGR01284 alt_nitrog_alph nitr 32.2 1.1E+02 0.0023 28.8 5.6 83 67-168 217-300 (457)
34 TIGR01285 nifN nitrogenase mol 32.1 92 0.002 29.0 5.2 63 100-184 239-301 (432)
35 TIGR01283 nifE nitrogenase mol 31.2 1E+02 0.0022 28.7 5.3 100 66-184 214-316 (456)
36 PRK05738 rplW 50S ribosomal pr 31.1 68 0.0015 23.8 3.4 28 96-123 21-49 (92)
37 PRK01388 arginine deiminase; P 29.9 4.7E+02 0.01 24.5 11.0 119 46-167 217-379 (406)
38 CHL00030 rpl23 ribosomal prote 29.2 79 0.0017 23.7 3.5 28 96-123 20-48 (93)
39 cd01976 Nitrogenase_MoFe_alpha 28.2 1.2E+02 0.0027 27.9 5.3 101 66-185 189-291 (421)
40 cd01977 Nitrogenase_VFe_alpha 28.0 1.3E+02 0.0027 27.6 5.2 83 67-168 180-263 (415)
41 COG0089 RplW Ribosomal protein 27.5 88 0.0019 23.8 3.4 28 96-123 22-50 (94)
42 PF06776 IalB: Invasion associ 27.4 1.7E+02 0.0037 22.3 5.2 63 22-85 52-114 (134)
43 COG3473 Maleate cis-trans isom 23.0 1.6E+02 0.0034 26.0 4.6 61 17-84 142-213 (238)
44 PRK04165 acetyl-CoA decarbonyl 21.8 4.6E+02 0.01 25.0 7.8 111 61-180 44-171 (450)
45 PRK04323 hypothetical protein; 21.6 3.6E+02 0.0078 20.3 7.0 69 45-116 10-79 (91)
46 cd00316 Oxidoreductase_nitroge 21.2 2.6E+02 0.0056 24.7 5.8 99 65-183 169-268 (399)
47 cd01973 Nitrogenase_VFe_beta_l 20.5 2.6E+02 0.0056 26.3 5.9 64 100-184 231-294 (454)
No 1
>PTZ00136 eukaryotic translation initiation factor 6-like protein; Provisional
Probab=100.00 E-value=2.9e-51 Score=352.71 Aligned_cols=173 Identities=66% Similarity=1.061 Sum_probs=162.8
Q ss_pred hccCcceEEEecCccc---------ccCCCCcEEEeccCCCceeeEEEeeCcEEEEecCCChhHHHHHHhhhCCeeEEEe
Q 029868 12 ATGLSGGFVLVTKMGF---------SCHTQPQTKRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQT 82 (186)
Q Consensus 12 ~~~~~~~~~~~~~~~~---------~l~~~~~v~~~~~~~~aiGn~i~aND~~alVpp~l~~~~~~~I~d~LgVeVi~tt 82 (186)
.+||++|++ +++... +||++++|.++++|++|+|||++|||+||++||++++++.+.|+|+||||+++++
T Consensus 63 ~~gN~nGll-vp~~~~d~El~~l~~~l~d~v~V~~l~~~~saiGn~i~~ND~~alV~p~l~~~~~e~I~d~L~VeVi~~t 141 (247)
T PTZ00136 63 TVGNRKGLL-VPSICTDQELQHLRNSLPDSVKVQRVEERLSALGNCIACNDYVALIHPDLDRETEEIIQDVLGVEVFRTT 141 (247)
T ss_pred EeecCCeEE-cCCcCCHHHHHHHHHhCcCCccEEEeCCccccceeEEEEcCCEEEECCCCCHHHHHHHHHhhCCcEEEEE
Confidence 356666666 554443 7888999999999999999999999999999999999999999999999999999
Q ss_pred eeCcceeeeEEEEcCCeEEeCCCCCHHHHHHHhhhcCcceeEEEeecCccceeeEEEEcCceEEEcCCCCHHHHHHHHHh
Q 029868 83 IAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATELSVIESV 162 (186)
Q Consensus 83 Iags~lVGsl~vgNn~G~LV~p~~~deElk~l~d~l~V~v~~gtvn~g~~~VGs~ivaNd~GalV~p~tt~~Ei~~Iedv 162 (186)
|||+++||+++++||+|+||||+++++|+++|+++|+|++.+||+|+|.++||++++|||||++|||+||++|+++|+++
T Consensus 142 Iag~~lVGs~~v~Nn~G~LVhP~~s~ee~~~i~d~L~V~v~~gTVn~G~~~VGsg~VaNn~G~lvg~~TT~~El~~Ie~~ 221 (247)
T PTZ00136 142 IAGNVLVGTYCVFTNQGGLVHPKTSVQEMDELSSLLQVPLVAGTVNRGSDVIGAGLVVNDWAAFCGMDTTATEISVIERI 221 (247)
T ss_pred ecCCceEEEEEEEeCcEEEECCCCCHHHHHHHHHHhCCcEEEeeecCCCCceeEEEEEECCEEEECCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCC--CCCchhHHHHHHHhhhhc
Q 029868 163 FKLRE--AQPNAIVDEMRKSLIDSY 185 (186)
Q Consensus 163 L~V~~--~~~~~~~~~~~~~~~~~~ 185 (186)
||++. ++|..+...+|+++||++
T Consensus 222 l~v~~~~~~~~~~~~~~~~~~~~~~ 246 (247)
T PTZ00136 222 FKLRRAGGKEGNDLQKLRSSLIDTL 246 (247)
T ss_pred hCCCcccCCchhhHHHHHHHHHHhh
Confidence 99999 777778789999999987
No 2
>COG1976 TIF6 Translation initiation factor 6 (eIF-6) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1e-45 Score=311.76 Aligned_cols=158 Identities=45% Similarity=0.607 Sum_probs=147.9
Q ss_pred hhhhhccCcceEEEecCcccccCCC--------------CcEEEeccCCCceeeEEEeeCcEEEEecCCChhHHHHHHhh
Q 029868 8 HQLVATGLSGGFVLVTKMGFSCHTQ--------------PQTKRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADV 73 (186)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~l~~~--------------~~v~~~~~~~~aiGn~i~aND~~alVpp~l~~~~~~~I~d~ 73 (186)
-.|.-|.+.|.+.++|++++++|.. ++|.++++|+||+||.|+|||+.||+||+++++..|.|+|+
T Consensus 50 ttI~gS~lvG~l~~gNsnG~lvP~~~~d~El~~l~~~~~v~V~~l~~k~nAlGN~Il~ND~~Alvhp~l~~~a~k~I~d~ 129 (222)
T COG1976 50 TTIAGSRLVGALTAGNSNGLLVPYGVRDEELRRLKNALGVEVLILPTKLNALGNLILANDKGALVHPDLSDEAEKEIEDV 129 (222)
T ss_pred EEecCceEEeEEEeecCCceEcCCcccHHHHHhhcccCCceEEEeCccccccccEEEecCceeEecCccCHHHHHHHHhh
Confidence 3456677777777777777766654 66889999999999999999999999999999999999999
Q ss_pred hCCeeEEEeeeCcceeeeEEEEcCCeEEeCCCCCHHHHHHHhhhcCcceeEEEeecCccceeeEEEEcCceEEEcCCCCH
Q 029868 74 LGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTA 153 (186)
Q Consensus 74 LgVeVi~ttIags~lVGsl~vgNn~G~LV~p~~~deElk~l~d~l~V~v~~gtvn~g~~~VGs~ivaNd~GalV~p~tt~ 153 (186)
|||++++++|||.++|||+++.||+|+||||.++++|+|+|+++|+|++..||+|+|.++||+|+||||||++||.+||+
T Consensus 130 LgVev~rgtIag~~tVGsa~v~tnkG~LvhP~~s~~Ele~Lse~f~V~v~~GTvN~Gs~~VG~glVaNs~g~lvG~dTTg 209 (222)
T COG1976 130 LGVEVVRGTIAGIPTVGSAGVLTNKGGLVHPETSDEELEELSELFGVPVDVGTVNFGSPYVGAGLVANSKGALVGEDTTG 209 (222)
T ss_pred cceEEEEEEecCccceeeEEEEecCcceeCCCCCHHHHHHHHHHhCeeEEEeeecCCCcceeeEEEEcCCceEEcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCC
Q 029868 154 TELSVIESVFKL 165 (186)
Q Consensus 154 ~Ei~~IedvL~V 165 (186)
||+.+||++|+.
T Consensus 210 pEl~rIe~aLg~ 221 (222)
T COG1976 210 PELARIEDALGF 221 (222)
T ss_pred chHHHHHHHhcc
Confidence 999999999984
No 3
>PRK04046 translation initiation factor IF-6; Provisional
Probab=100.00 E-value=4.5e-40 Score=279.36 Aligned_cols=160 Identities=39% Similarity=0.551 Sum_probs=152.3
Q ss_pred hhhhhhccCcceEEEecCcccccCCC--------------CcEEEeccCCCceeeEEEeeCcEEEEecCCChhHHHHHHh
Q 029868 7 KHQLVATGLSGGFVLVTKMGFSCHTQ--------------PQTKRIEERLSALGNCIACNDHVALAHTDLDRETEEIIAD 72 (186)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~l~~~--------------~~v~~~~~~~~aiGn~i~aND~~alVpp~l~~~~~~~I~d 72 (186)
|-.+.-+.+.|.|+++|+.+..+|.. ++|.+++.+++++|+++++||++|++||+++++.++.|+|
T Consensus 48 ~~~i~gs~~iG~~i~~N~~g~lvp~~~~~~e~~~l~e~L~v~V~~~~~~~~~vGn~i~~N~~G~lv~p~~~~ee~~~i~~ 127 (222)
T PRK04046 48 ETTIAGSSLVGSLAAGNSNGILVPSIVLDEELELLKEALDLNVEVLPSKLTALGNLILANDKGALVHPELSDEARKVIED 127 (222)
T ss_pred EEEecCCcceEEEEEEcCceEEeCCCCCHHHHHHHHHhcCceEEEEeccccceEeEEEEcCcEEEECCCCCHHHHHHHHH
Confidence 34566788999999999999988776 4688888999999999999999999999999999999999
Q ss_pred hhCCeeEEEeeeCcceeeeEEEEcCCeEEeCCCCCHHHHHHHhhhcCcceeEEEeecCccceeeEEEEcCceEEEcCCCC
Q 029868 73 VLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTT 152 (186)
Q Consensus 73 ~LgVeVi~ttIags~lVGsl~vgNn~G~LV~p~~~deElk~l~d~l~V~v~~gtvn~g~~~VGs~ivaNd~GalV~p~tt 152 (186)
+||||+.+.+|++.++||+++++||+|++|||+++++|+++|+++|+|++.++|+|+|.++||++++|||+|++|||+||
T Consensus 128 ~L~V~v~~~ti~~~~~VGs~ivaNd~G~lv~p~~t~~ei~~i~~~l~v~~~~gTvn~G~~~VGs~~van~~G~lvg~~tt 207 (222)
T PRK04046 128 TLGVEVERGTIAGLKTVGSAGVVTNKGGLVHPDATDEELKFLEDLFKVEVDIGTVNFGSPLVGSGLVANSKGAVVGSDTT 207 (222)
T ss_pred hhCceEEEEecCCccceeeEEEEeCCEEEECCCCCHHHHHHHHHHhCCceEEeEEcCCCCceeEEEEEeCCEEEECCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCC
Q 029868 153 ATELSVIESVFKLR 166 (186)
Q Consensus 153 ~~Ei~~IedvL~V~ 166 (186)
++|+++|+++||..
T Consensus 208 ~~El~~ie~~l~~~ 221 (222)
T PRK04046 208 GPELGRIEDALGFI 221 (222)
T ss_pred HHHHHHHHHHhccC
Confidence 99999999999974
No 4
>KOG3185 consensus Translation initiation factor 6 (eIF-6) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.7e-40 Score=278.00 Aligned_cols=173 Identities=73% Similarity=1.061 Sum_probs=166.0
Q ss_pred ccCcceEEEecCc---------ccccCCCCcEEEeccCCCceeeEEEeeCcEEEEecCCChhHHHHHHhhhCCeeEEEee
Q 029868 13 TGLSGGFVLVTKM---------GFSCHTQPQTKRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTI 83 (186)
Q Consensus 13 ~~~~~~~~~~~~~---------~~~l~~~~~v~~~~~~~~aiGn~i~aND~~alVpp~l~~~~~~~I~d~LgVeVi~ttI 83 (186)
.||-+|++ +++. +++||+.+.+.|+++|.+|+||.|+|||++|+|||++++++.+.|+|+|+|+|++.+|
T Consensus 64 ~GNr~GLL-vp~~tTDqElqHlRnSLPd~V~i~RveErlsALGNviaCNDyvAlvH~dldketEeii~dVL~VeVfRqti 142 (245)
T KOG3185|consen 64 VGNRHGLL-VPHTTTDQELQHLRNSLPDEVVIQRVEERLSALGNVIACNDYVALVHPDLDKETEEIIADVLKVEVFRQTI 142 (245)
T ss_pred ccCcCcee-cCCcCcHHHHHHHHhcCCcceeeehhhhHHhhhcCEEEecceeEEecCccchhHHHHHHHHhheeeeeecc
Confidence 36777777 5543 4499999999999999999999999999999999999999999999999999999999
Q ss_pred eCcceeeeEEEEcCCeEEeCCCCCHHHHHHHhhhcCcceeEEEeecCccceeeEEEEcCceEEEcCCCCHHHHHHHHHhh
Q 029868 84 AGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATELSVIESVF 163 (186)
Q Consensus 84 ags~lVGsl~vgNn~G~LV~p~~~deElk~l~d~l~V~v~~gtvn~g~~~VGs~ivaNd~GalV~p~tt~~Ei~~IedvL 163 (186)
++.++|||+++.+|+|++|||.++-|+.++|+.+|.|++..||+|+|+..+|+|+++|||-|++|-+||..|+..|+.+|
T Consensus 143 a~n~LvGsyc~lsnqG~lVhp~Ts~e~q~Els~LlqVplVAGTvNrGS~vi~aGmvvNDw~af~G~dTTa~ElsViesiF 222 (245)
T KOG3185|consen 143 AQNSLVGSYCALSNQGGLVHPRTSVEDQDELSSLLQVPLVAGTVNRGSEVIGAGMVVNDWTAFCGLDTTATELSVIESIF 222 (245)
T ss_pred cCCceeeeeEEEcCCCceecCCCCHHHHHHHHHHhccceeeeeecCCceeeecceEeeceeeeeccCCcchhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCchhHHHHHHHhhhhcC
Q 029868 164 KLREAQPNAIVDEMRKSLIDSYV 186 (186)
Q Consensus 164 ~V~~~~~~~~~~~~~~~~~~~~~ 186 (186)
++.+|||..+..++|+++||+|+
T Consensus 223 kL~~aqp~~i~~~~R~~lid~~~ 245 (245)
T KOG3185|consen 223 KLNEAQPSSISSELRDTLIDSYV 245 (245)
T ss_pred hhcccCchhHHHHHHHHHHHhcC
Confidence 99999999998999999999985
No 5
>TIGR00323 eIF-6 translation initiation factor eIF-6, putative. This model finds translation initiation factor eIF-6 of eukaryotes, which is a ribosome dissociation factor. It also finds a set of apparent archaeal orthologs, slightly shorter proteins not yet shown to act as initiation factors; these probably should be designated as translation initiation factor aIF-6, putative.
Probab=100.00 E-value=7.4e-40 Score=277.22 Aligned_cols=160 Identities=55% Similarity=0.810 Sum_probs=152.1
Q ss_pred hhhhhhhccCcceEEEecCcccccCCC------------CcEEEeccCCCceeeEEEeeCcEEEEecCCChhHHHHHHhh
Q 029868 6 LKHQLVATGLSGGFVLVTKMGFSCHTQ------------PQTKRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADV 73 (186)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~l~~~------------~~v~~~~~~~~aiGn~i~aND~~alVpp~l~~~~~~~I~d~ 73 (186)
.|-.|.-|.++|.|+++|+....+|+. ++|.+++++.+++||++++||++|++||.++++.++.|+|.
T Consensus 44 ~~~~i~gs~~IGv~~~~n~~~~lvp~~~~~~~~~~l~e~l~V~~i~t~i~~iGnli~~Nd~G~lv~~~~~~~e~~~i~~~ 123 (215)
T TIGR00323 44 LHTTIAGSSLVGAMTAGNSRGLLVPDQVLDHELDSLPDSLKVQRIEERLTALGNNILCNDYGALASPELDRDTEELISDV 123 (215)
T ss_pred EEEEEcCCcceeEEEEEcCCEEEECCCcCHHHHHhhHhhcCeEEEeeEEEeeeeEEEEcCceEEeCCCCCHHHHHHHHHh
Confidence 345677888999999999888866554 88999999999999999999999999999999999999999
Q ss_pred hCCeeEEEeeeCcceeeeEEEEcCCeEEeCCCCCHHHHHHHhhhcCcceeEEEeecCccceeeEEEEcCceEEEcCCCCH
Q 029868 74 LGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTA 153 (186)
Q Consensus 74 LgVeVi~ttIags~lVGsl~vgNn~G~LV~p~~~deElk~l~d~l~V~v~~gtvn~g~~~VGs~ivaNd~GalV~p~tt~ 153 (186)
||++|.+.+|++..++|+++++||+|+||||+++++|+|.|+|+|||++.++|+|+|.++|||+++|||+|++|||+||+
T Consensus 124 L~v~V~~~~i~~~~~vG~~~v~nN~G~lvhP~~s~ee~~~i~d~LgV~v~~gTin~G~~~VGs~~Vann~G~lv~~~tt~ 203 (215)
T TIGR00323 124 LGVEVFRGTIAGLITVGSYAVVTNRGGLVHPQTSVQEQEELSSLLGVELVAGTVNRGTTVVGAGMVANSKGAVVGLDTTG 203 (215)
T ss_pred cCCcEEEEecccccccceEEEEeCcEEEECCCCCHHHHHHHHHHhCCcEEEEEecCCCCceeEEEEEECCEEEECCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCC
Q 029868 154 TELSVIESVFKL 165 (186)
Q Consensus 154 ~Ei~~IedvL~V 165 (186)
+|+++|+++||+
T Consensus 204 ~El~~ie~~l~~ 215 (215)
T TIGR00323 204 PELSIIEEALGL 215 (215)
T ss_pred HHHHHHHHHhCc
Confidence 999999999985
No 6
>PF01912 eIF-6: eIF-6 family; InterPro: IPR002769 This family includes eukaryotic translation initiation factor 6 (eIF6) as well as presumed archaeal homologues. The assembly of 80S ribosomes requires joining of the 40S and 60S subunits, which is triggered by the formation of an initiation complex on the 40S subunit. This event is rate-limiting for translation, and depends on external stimuli and the status of the cell. Eukaryotic translation initiation factor 6 (eIF6) binds specifically to the free 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit ribosomes []. Furthermore, eIF6 interacts in the cytoplasm with RACK1, a receptor for activated protein kinase C (PKC). RACK1 is a major component of translating ribosomes, which harbour significant amounts of PKC. Loading 60S subunits with eIF6 caused a dose-dependent translational block and impairment of 80S formation, which are reversed by expression of RACK1 and stimulation of PKC in vivo and in vitro. PKC stimulation leads to eIF6 phosphorylation and its release, promoting 80S subunit formation. RACK1 provides a physical and functional link between PKC signalling and ribosome activation.; GO: 0043022 ribosome binding, 0042256 mature ribosome assembly; PDB: 4A19_J 4A1D_J 4A1B_J 4A18_J 1G61_A 2X7N_B 1G62_A.
Probab=100.00 E-value=8.5e-41 Score=280.21 Aligned_cols=132 Identities=51% Similarity=0.712 Sum_probs=105.3
Q ss_pred hccCcceEEEecCccc---------ccCCCCcEEEeccCCCceeeEEEeeCcEEEEecCCChhHHHHHHhhhCCeeEEEe
Q 029868 12 ATGLSGGFVLVTKMGF---------SCHTQPQTKRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQT 82 (186)
Q Consensus 12 ~~~~~~~~~~~~~~~~---------~l~~~~~v~~~~~~~~aiGn~i~aND~~alVpp~l~~~~~~~I~d~LgVeVi~tt 82 (186)
++||++|++ +++... ++| +++|+++++|+||+||+|+|||++|++||++++++.+.|+|+|||||++++
T Consensus 59 ~~GNsnGll-vp~~~~d~El~~Lk~~~~-~v~V~~l~~k~tAlGN~Il~ND~~Alv~p~l~~e~~~~I~d~LgVeV~~~t 136 (199)
T PF01912_consen 59 CVGNSNGLL-VPSIITDEELEHLKESLP-DVNVEVLPSKLTALGNLILANDKGALVHPELSKETIEIISDVLGVEVFRGT 136 (199)
T ss_dssp -EEESSEEE-EETT--HHHHHHHHHHS--TSEEEEE--SSS-HHHHEEE-SSEEEE-CCGGHHHHHHHHHHHTSEEEE--
T ss_pred EEEcCCEEE-ECCcCCHHHHHHHHhhCC-CceEEEeCceeccccCEEEEcCcceEEcCCCCHHHHHHHHHhcCceEEEEE
Confidence 345555555 444443 455 689999999999999999999999999999999999999999999999999
Q ss_pred eeCcceeeeEEEEcCCeEEeCCCCCHHHHHHHhhhcCcceeEEEeecCccceeeEEEEcCceE
Q 029868 83 IAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTA 145 (186)
Q Consensus 83 Iags~lVGsl~vgNn~G~LV~p~~~deElk~l~d~l~V~v~~gtvn~g~~~VGs~ivaNd~Ga 145 (186)
|||.++|||++++||+|+||||+++++|+++|+++|+|++..||+|+|.++||+|++|||||+
T Consensus 137 ia~~~~VGs~~v~tn~G~LvhP~~s~eEl~~l~~~l~v~~~~GTVN~Gs~~VgsGlvaN~~g~ 199 (199)
T PF01912_consen 137 IAGIKTVGSAAVATNKGGLVHPDASEEELEELEELLGVPVDIGTVNRGSPFVGSGLVANDKGA 199 (199)
T ss_dssp BTTBS-CCCSEEE-SSEEEE-TT--HHHHHHHHHHHTSSEEE--BTTTBS-HHHHEEEESSEE
T ss_pred ecCcccceeeEEEeCcEEEECCCCCHHHHHHHHHHhCCceeeeeecCCCCceeEEEEeccccC
Confidence 999999999999999999999999999999999999999999999999999999999999996
No 7
>cd00527 IF6 Ribosome anti-association factor IF6 binds the large ribosomal subunit and prevents the two subunits from associating during translation initiation. IF6 comprises a family of translation factors that includes both eukaryotic (eIF6) and archeal (aIF6) members. All members of this family have a conserved pentameric fold referred to as a beta/alpha propeller. The eukaryotic IF6 members have a moderately conserved C-terminal extension which is not required for ribosomal binding, and may have an alternative function.
Probab=100.00 E-value=4.7e-39 Score=273.06 Aligned_cols=159 Identities=50% Similarity=0.704 Sum_probs=150.4
Q ss_pred hhhhhhhccCcceEEEecCcccccCCC------------C--cEEEeccCCC--ceeeEEEeeCcEEEEecCCChhHHHH
Q 029868 6 LKHQLVATGLSGGFVLVTKMGFSCHTQ------------P--QTKRIEERLS--ALGNCIACNDHVALAHTDLDRETEEI 69 (186)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~l~~~------------~--~v~~~~~~~~--aiGn~i~aND~~alVpp~l~~~~~~~ 69 (186)
.|-.|.-|.+.|.|+++|+....+|.. + +|.+++.+.+ ++||++++||++|++||.++++.++.
T Consensus 46 ~~~~i~gs~~IGv~~~~n~~~~lvp~~~~~~e~~~l~~~L~~~V~v~~~~~~~s~iGnli~~Nd~g~lv~~~~~~~e~~~ 125 (220)
T cd00527 46 VRTTIGGSRLVGSLTVGNSNGLLLPHTTTDQELQHIRNSLPDEVGVLRVKENLSALGNVILCNDHGALVHPDLSKEAEEI 125 (220)
T ss_pred EEEEEcCccceeEEEEEeCCEEEECCCCCHHHHHHHHHhcCCCeEEEEccccceeeeeEEEEcCceEEeCCCCCHHHHHH
Confidence 355678899999999999999988864 3 3888877777 99999999999999999999999999
Q ss_pred HHhhhCCeeEEEeeeCcceeeeEEEEcCCeEEeCCCCCHHHHHHHhhhcCcceeEEEeecCccceeeEEEEcCceEEEcC
Q 029868 70 IADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGS 149 (186)
Q Consensus 70 I~d~LgVeVi~ttIags~lVGsl~vgNn~G~LV~p~~~deElk~l~d~l~V~v~~gtvn~g~~~VGs~ivaNd~GalV~p 149 (186)
|+|+|+|+|++.+|++.+.+|+++++||+|+|+||+++++|+|.|+|+|||++.++|+|+|.++|||+++|||+|++|||
T Consensus 126 i~~~L~v~V~~~~i~~~~avGn~iv~Nd~g~LvhP~~s~ee~~~i~d~L~V~v~~gTvN~G~~~VGs~~VannkG~lvg~ 205 (220)
T cd00527 126 IEDVLGVEVFRGTIAGIKTVGSAGVLTNKGGLVHPKTSDEELEELSELFKVPVVAGTVNFGSQYVGAGLVANSKGAVVGS 205 (220)
T ss_pred HHHhcCCcEEEEEccCcccceeEEEEeccEEEECCCCCHHHHHHHHHHhCCcEEEEEEcCCCCceeEEEEEECCEEEECC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHhhC
Q 029868 150 DTTATELSVIESVFK 164 (186)
Q Consensus 150 ~tt~~Ei~~IedvL~ 164 (186)
+||++|+++|+++||
T Consensus 206 ~tt~~El~~ie~~l~ 220 (220)
T cd00527 206 DTTGPELSRIEDALG 220 (220)
T ss_pred CCCHHHHHHHHHHhC
Confidence 999999999999996
No 8
>smart00654 eIF6 translation initiation factor 6.
Probab=100.00 E-value=2.6e-37 Score=259.12 Aligned_cols=159 Identities=18% Similarity=0.195 Sum_probs=148.8
Q ss_pred hhhhhhccCcceEEEecCcccccCCC--------------CcEEEec-cCCCceeeEEEeeCcEEEEecCCChhHHHHHH
Q 029868 7 KHQLVATGLSGGFVLVTKMGFSCHTQ--------------PQTKRIE-ERLSALGNCIACNDHVALAHTDLDRETEEIIA 71 (186)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~l~~~--------------~~v~~~~-~~~~aiGn~i~aND~~alVpp~l~~~~~~~I~ 71 (186)
|-.|.-|.+.|.|++.|+....+|.. ++|.++. ++++++|+++++||+++++||.++++.++.|+
T Consensus 2 ~~~i~gs~~IGv~~~~n~~~~lvp~~~~~~~~~~i~e~L~v~V~~~~i~~~~~iGnli~~N~~g~lv~~~~~~~el~~i~ 81 (200)
T smart00654 2 RLSFEGSPNIGVYIKLTNSYCLVPVGGDENFYSVIEEVLGVPVVHTSIGGSRLIGRLTVGNSNGLLVPNTTTDQELQHLR 81 (200)
T ss_pred eEEEcCCcceeEEEEEeCCEEEECCCCCHHHHHHHHHhcCCcEEEEecCCceeEEEEEEEcCCEEEeCCCCCHHHHHHHH
Confidence 34567789999999999999988876 4455555 89999999999999999999999999999999
Q ss_pred hhhC--CeeEEEeeeCcceeeeEEEEcCCeEEeCCCCCHHHHHHHhhhcCcceeEEEeecCccceeeEEEEcCceEEEcC
Q 029868 72 DVLG--VEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGS 149 (186)
Q Consensus 72 d~Lg--VeVi~ttIags~lVGsl~vgNn~G~LV~p~~~deElk~l~d~l~V~v~~gtvn~g~~~VGs~ivaNd~GalV~p 149 (186)
+.|+ ++|.+.+.. .+.+|+++++||+|+|+||+++++|+|.|+|+|+|++.++|+ +|.++|||+++|||+|++|||
T Consensus 82 ~~L~d~v~V~~~~~~-~~avGn~iv~Nd~g~lvhp~~s~ee~~~i~d~L~V~v~~gTi-~G~~~VGs~~VannkG~lv~~ 159 (200)
T smart00654 82 NSLPDSVEVQRVEER-LTALGNLILCNDHGALASPDLSKETEEIISDVLGVEVFRGTI-AGNITVGSYCVVTNKGGLVHP 159 (200)
T ss_pred HhcCCCeeEEEEccc-cccceeEEEEcCceEEECCCCCHHHHHHHHHHhCCeEEEEEe-cCcccceEEEEEECCEEEECC
Confidence 9997 999988887 999999999999999999999999999999999999999999 999999999999999999999
Q ss_pred CCCHHHHHHHHHhhCCCC
Q 029868 150 DTTATELSVIESVFKLRE 167 (186)
Q Consensus 150 ~tt~~Ei~~IedvL~V~~ 167 (186)
+||++|+++|+++||++.
T Consensus 160 ~tt~~El~~ie~~l~v~~ 177 (200)
T smart00654 160 DTSEEELKELSELLGVPL 177 (200)
T ss_pred CCCHHHHHHHHHHhCCCc
Confidence 999999999999999996
No 9
>PRK04046 translation initiation factor IF-6; Provisional
Probab=100.00 E-value=4.8e-37 Score=260.86 Aligned_cols=160 Identities=21% Similarity=0.217 Sum_probs=151.2
Q ss_pred hhhhhhhccCcceEEEecCcccccCCCC------------cEEE---eccCCCceeeEEEeeCcEEEEecCCChhHHHHH
Q 029868 6 LKHQLVATGLSGGFVLVTKMGFSCHTQP------------QTKR---IEERLSALGNCIACNDHVALAHTDLDRETEEII 70 (186)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~------------~v~~---~~~~~~aiGn~i~aND~~alVpp~l~~~~~~~I 70 (186)
.|-.+.-+.+.|.|+..++....+|..+ +|.+ .-++.+++|+|+++||+++++||.++++.++.|
T Consensus 3 ~~~~i~gs~~iG~~~~~n~~~~lvp~~~~~~~~~~i~~~L~v~i~~~~i~gs~~iG~~i~~N~~g~lvp~~~~~~e~~~l 82 (222)
T PRK04046 3 RRLSIFGSPNIGVYARATDDYALVPPDLDEKTVEKIEETLGVEVVETTIAGSSLVGSLAAGNSNGILVPSIVLDEELELL 82 (222)
T ss_pred EEEEEcCCCceEEEEEEcCCEEEECCCCCHHHHHHHHHhcCceEEEEEecCCcceEEEEEEcCceEEeCCCCCHHHHHHH
Confidence 3556788999999999999999999883 4433 467999999999999999999999999999999
Q ss_pred HhhhCCeeEEEeeeCcceeeeEEEEcCCeEEeCCCCCHHHHHHHhhhcCcceeEEEeecCccceeeEEEEcCceEEEcCC
Q 029868 71 ADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSD 150 (186)
Q Consensus 71 ~d~LgVeVi~ttIags~lVGsl~vgNn~G~LV~p~~~deElk~l~d~l~V~v~~gtvn~g~~~VGs~ivaNd~GalV~p~ 150 (186)
+|.|||++.++++ +++++|+++++||+|+++||.++++|+|.|++.|+|++.++++ +|.+++||+++|||+||+|||+
T Consensus 83 ~e~L~v~V~~~~~-~~~~vGn~i~~N~~G~lv~p~~~~ee~~~i~~~L~V~v~~~ti-~~~~~VGs~ivaNd~G~lv~p~ 160 (222)
T PRK04046 83 KEALDLNVEVLPS-KLTALGNLILANDKGALVHPELSDEARKVIEDTLGVEVERGTI-AGLKTVGSAGVVTNKGGLVHPD 160 (222)
T ss_pred HHhcCceEEEEec-cccceEeEEEEcCcEEEECCCCCHHHHHHHHHhhCceEEEEec-CCccceeeEEEEeCCEEEECCC
Confidence 9999999999999 9999999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred CCHHHHHHHHHhhCCCC
Q 029868 151 TTATELSVIESVFKLRE 167 (186)
Q Consensus 151 tt~~Ei~~IedvL~V~~ 167 (186)
+|++|+++|+++||++.
T Consensus 161 ~t~~ei~~i~~~l~v~~ 177 (222)
T PRK04046 161 ATDEELKFLEDLFKVEV 177 (222)
T ss_pred CCHHHHHHHHHHhCCce
Confidence 99999999999999996
No 10
>smart00654 eIF6 translation initiation factor 6.
Probab=100.00 E-value=3.1e-35 Score=246.57 Aligned_cols=132 Identities=65% Similarity=0.935 Sum_probs=122.8
Q ss_pred ccCcceEEEecCccc---------ccCCCCcEEEeccCCCceeeEEEeeCcEEEEecCCChhHHHHHHhhhCCeeEEEee
Q 029868 13 TGLSGGFVLVTKMGF---------SCHTQPQTKRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTI 83 (186)
Q Consensus 13 ~~~~~~~~~~~~~~~---------~l~~~~~v~~~~~~~~aiGn~i~aND~~alVpp~l~~~~~~~I~d~LgVeVi~ttI 83 (186)
.+|++|++ +++... +||+.++|.+++.+++++||+++|||++|++||+++++.++.|+|+||||+.+.||
T Consensus 60 ~~N~~g~l-v~~~~~~~el~~i~~~L~d~v~V~~~~~~~~avGn~iv~Nd~g~lvhp~~s~ee~~~i~d~L~V~v~~gTi 138 (200)
T smart00654 60 VGNSNGLL-VPNTTTDQELQHLRNSLPDSVEVQRVEERLTALGNLILCNDHGALASPDLSKETEEIISDVLGVEVFRGTI 138 (200)
T ss_pred EEcCCEEE-eCCCCCHHHHHHHHHhcCCCeeEEEEccccccceeEEEEcCceEEECCCCCHHHHHHHHHHhCCeEEEEEe
Confidence 45666666 333332 67788999999999999999999999999999999999999999999999999999
Q ss_pred eCcceeeeEEEEcCCeEEeCCCCCHHHHHHHhhhcCcceeEEEeecCccceeeEEEEcCceE
Q 029868 84 AGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTA 145 (186)
Q Consensus 84 ags~lVGsl~vgNn~G~LV~p~~~deElk~l~d~l~V~v~~gtvn~g~~~VGs~ivaNd~Ga 145 (186)
+|+++|||.+++||+|+||||+++++|+++|+++|++++..||+|+|.++||+|++|||+|+
T Consensus 139 ~G~~~VGs~~VannkG~lv~~~tt~~El~~ie~~l~v~~~~gTvN~G~~~vg~glvaN~~g~ 200 (200)
T smart00654 139 AGNITVGSYCVVTNKGGLVHPDTSEEELKELSELLGVPLVAGTVNFGSEVVGAGLVANDNGA 200 (200)
T ss_pred cCcccceEEEEEECCEEEECCCCCHHHHHHHHHHhCCCcccceecCCCCceeeEEEEccccC
Confidence 99999999999999999999999999999999999999999999999999999999999996
No 11
>PF01912 eIF-6: eIF-6 family; InterPro: IPR002769 This family includes eukaryotic translation initiation factor 6 (eIF6) as well as presumed archaeal homologues. The assembly of 80S ribosomes requires joining of the 40S and 60S subunits, which is triggered by the formation of an initiation complex on the 40S subunit. This event is rate-limiting for translation, and depends on external stimuli and the status of the cell. Eukaryotic translation initiation factor 6 (eIF6) binds specifically to the free 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit ribosomes []. Furthermore, eIF6 interacts in the cytoplasm with RACK1, a receptor for activated protein kinase C (PKC). RACK1 is a major component of translating ribosomes, which harbour significant amounts of PKC. Loading 60S subunits with eIF6 caused a dose-dependent translational block and impairment of 80S formation, which are reversed by expression of RACK1 and stimulation of PKC in vivo and in vitro. PKC stimulation leads to eIF6 phosphorylation and its release, promoting 80S subunit formation. RACK1 provides a physical and functional link between PKC signalling and ribosome activation.; GO: 0043022 ribosome binding, 0042256 mature ribosome assembly; PDB: 4A19_J 4A1D_J 4A1B_J 4A18_J 1G61_A 2X7N_B 1G62_A.
Probab=100.00 E-value=2.8e-35 Score=246.96 Aligned_cols=126 Identities=25% Similarity=0.333 Sum_probs=110.4
Q ss_pred cCCCceeeEEEeeCcEEEEecCCChhHHHHHHhhhCCeeEEEeeeCcceeeeEEEEcCCeEEeCCCCCHHHHHHHhhhc-
Q 029868 40 ERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLL- 118 (186)
Q Consensus 40 ~~~~aiGn~i~aND~~alVpp~l~~~~~~~I~d~LgVeVi~ttIags~lVGsl~vgNn~G~LV~p~~~deElk~l~d~l- 118 (186)
++.++||+|+++||+||++||+++++..+.|+++|++|+++|+|+||+++|+|++||+||+|||+.++|+|++.|++.+
T Consensus 6 ~gs~~IGvy~~~t~~~~lvp~~~~~~~~~~i~e~L~v~vv~t~I~gs~lvG~l~~GNsnGllvp~~~~d~El~~Lk~~~~ 85 (199)
T PF01912_consen 6 YGSPNIGVYARATNDYALVPPGVSEKFVSIIEEELDVEVVETTIAGSRLVGSLCVGNSNGLLVPSIITDEELEHLKESLP 85 (199)
T ss_dssp TTBS-HHHHEEEESSEEEEETTS-HHHHHHHHHHHTSEEEEE-BTTBS-HHHH-EEESSEEEEETT--HHHHHHHHHHS-
T ss_pred eCCCCEEEEEEEcCCEEEEcCCCCHHHHHHHHHhcCCcEEEEEecCcceEEEEEEEcCCEEEECCcCCHHHHHHHHhhCC
Confidence 5789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcceeEEEeecCccceeeEEEEcCceEEEcCCCCHHHHHHHHHhhCCCC
Q 029868 119 QVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATELSVIESVFKLRE 167 (186)
Q Consensus 119 ~V~v~~gtvn~g~~~VGs~ivaNd~GalV~p~tt~~Ei~~IedvL~V~~ 167 (186)
++++ .+++.+.+++||.++|||+||+|||++++++.+.|+|+|||++
T Consensus 86 ~v~V--~~l~~k~tAlGN~Il~ND~~Alv~p~l~~e~~~~I~d~LgVeV 132 (199)
T PF01912_consen 86 DVNV--EVLPSKLTALGNLILANDKGALVHPELSKETIEIISDVLGVEV 132 (199)
T ss_dssp TSEE--EEE--SSS-HHHHEEE-SSEEEE-CCGGHHHHHHHHHHHTSEE
T ss_pred CceE--EEeCceeccccCEEEEcCcceEEcCCCCHHHHHHHHHhcCceE
Confidence 5555 8999999999999999999999999999999999999999997
No 12
>COG1976 TIF6 Translation initiation factor 6 (eIF-6) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.5e-33 Score=236.70 Aligned_cols=127 Identities=30% Similarity=0.451 Sum_probs=123.9
Q ss_pred cCCCceeeEEEeeCcEEEEecCCChhHHHHHHhhhCCeeEEEeeeCcceeeeEEEEcCCe--------------------
Q 029868 40 ERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRG-------------------- 99 (186)
Q Consensus 40 ~~~~aiGn~i~aND~~alVpp~l~~~~~~~I~d~LgVeVi~ttIags~lVGsl~vgNn~G-------------------- 99 (186)
++.++||+|+.++|+||++||+.++++++.|+|+|+||+++++|+||++||+|+++|+||
T Consensus 9 ~gs~~IGvy~~~t~~~~lv~~~~~e~~~~~i~e~L~v~vv~ttI~gS~lvG~l~~gNsnG~lvP~~~~d~El~~l~~~~~ 88 (222)
T COG1976 9 EGSPNIGVYAKATESYALVPPGLDEKFVDVIREVLGVPVVETTIAGSRLVGALTAGNSNGLLVPYGVRDEELRRLKNALG 88 (222)
T ss_pred cCCCceEEEEEecccEEEEcCCCCHHHHHHHHHHhCCcEEEEEecCceEEeEEEeecCCceEcCCcccHHHHHhhcccCC
Confidence 688999999999999999999999999999999999999999999999999999997777
Q ss_pred -----------------------EEeCCCCCHHHHHHHhhhcCcceeEEEeecCccceeeEEEEcCceEEEcCCCCHHHH
Q 029868 100 -----------------------GLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATEL 156 (186)
Q Consensus 100 -----------------------~LV~p~~~deElk~l~d~l~V~v~~gtvn~g~~~VGs~ivaNd~GalV~p~tt~~Ei 156 (186)
+|+||+.++++.|.|+|+|||++.++|+ +|.+.|||..++|++|+||||++|++|+
T Consensus 89 v~V~~l~~k~nAlGN~Il~ND~~Alvhp~l~~~a~k~I~d~LgVev~rgtI-ag~~tVGsa~v~tnkG~LvhP~~s~~El 167 (222)
T COG1976 89 VEVLILPTKLNALGNLILANDKGALVHPDLSDEAEKEIEDVLGVEVVRGTI-AGIPTVGSAGVLTNKGGLVHPETSDEEL 167 (222)
T ss_pred ceEEEeCccccccccEEEecCceeEecCccCHHHHHHHHhhcceEEEEEEe-cCccceeeEEEEecCcceeCCCCCHHHH
Confidence 9999999999999999999999999998 9999999999999999999999999999
Q ss_pred HHHHHhhCCCC
Q 029868 157 SVIESVFKLRE 167 (186)
Q Consensus 157 ~~IedvL~V~~ 167 (186)
+++++.|||+.
T Consensus 168 e~Lse~f~V~v 178 (222)
T COG1976 168 EELSELFGVPV 178 (222)
T ss_pred HHHHHHhCeeE
Confidence 99999999997
No 13
>cd00527 IF6 Ribosome anti-association factor IF6 binds the large ribosomal subunit and prevents the two subunits from associating during translation initiation. IF6 comprises a family of translation factors that includes both eukaryotic (eIF6) and archeal (aIF6) members. All members of this family have a conserved pentameric fold referred to as a beta/alpha propeller. The eukaryotic IF6 members have a moderately conserved C-terminal extension which is not required for ribosomal binding, and may have an alternative function.
Probab=100.00 E-value=3.8e-33 Score=236.97 Aligned_cols=159 Identities=19% Similarity=0.218 Sum_probs=148.4
Q ss_pred hhhhhhccCcceEEEecCcccccCCC------------CcEEEec---cCCCceeeEEEeeCcEEEEecCCChhHHHHHH
Q 029868 7 KHQLVATGLSGGFVLVTKMGFSCHTQ------------PQTKRIE---ERLSALGNCIACNDHVALAHTDLDRETEEIIA 71 (186)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~l~~~------------~~v~~~~---~~~~aiGn~i~aND~~alVpp~l~~~~~~~I~ 71 (186)
|-.+..+.|+|.|+..++.-..+|.. +++.++. .+.+.+|+|+++||+++++|+..+++..+.|+
T Consensus 3 ~~~~~g~~~iGv~~~~~~~~~lvp~~~~~~~~~~i~e~L~v~i~~~~i~gs~~IGv~~~~n~~~~lvp~~~~~~e~~~l~ 82 (220)
T cd00527 3 RLSFEGSPNIGVFAKATNSYCLVPPGGDENFVSKFEEELGVPVVRTTIGGSRLVGSLTVGNSNGLLLPHTTTDQELQHIR 82 (220)
T ss_pred eEEEeCCCCeEEEEEEeccEEEEcCCCCHHHHHHHHHHhCCcEEEEEEcCccceeEEEEEeCCEEEECCCCCHHHHHHHH
Confidence 44567789999999999988888877 4455554 78899999999999999999999999999999
Q ss_pred hhhC--CeeEEEeeeCcceeeeEEEEcCCeEEeCCCCCHHHHHHHhhhcCcceeEEEeecCccceeeEEEEcCceEEEcC
Q 029868 72 DVLG--VEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGS 149 (186)
Q Consensus 72 d~Lg--VeVi~ttIags~lVGsl~vgNn~G~LV~p~~~deElk~l~d~l~V~v~~gtvn~g~~~VGs~ivaNd~GalV~p 149 (186)
+.|+ |+++++++.+| ++|.++++||+|+||||.++++|++.|+++|++++.++++ ++.+++||.++|||+||+|||
T Consensus 83 ~~L~~~V~v~~~~~~~s-~iGnli~~Nd~g~lv~~~~~~~e~~~i~~~L~v~V~~~~i-~~~~avGn~iv~Nd~g~LvhP 160 (220)
T cd00527 83 NSLPDEVGVLRVKENLS-ALGNVILCNDHGALVHPDLSKEAEEIIEDVLGVEVFRGTI-AGIKTVGSAGVLTNKGGLVHP 160 (220)
T ss_pred HhcCCCeEEEEccccce-eeeeEEEEcCceEEeCCCCCHHHHHHHHHhcCCcEEEEEc-cCcccceeEEEEeccEEEECC
Confidence 9999 99999999999 9999999999999999999999999999999999999998 679999999999999999999
Q ss_pred CCCHHHHHHHHHhhCCCC
Q 029868 150 DTTATELSVIESVFKLRE 167 (186)
Q Consensus 150 ~tt~~Ei~~IedvL~V~~ 167 (186)
++|++|++.|+|+|||+.
T Consensus 161 ~~s~ee~~~i~d~L~V~v 178 (220)
T cd00527 161 KTSDEELEELSELFKVPV 178 (220)
T ss_pred CCCHHHHHHHHHHhCCcE
Confidence 999999999999999996
No 14
>PTZ00136 eukaryotic translation initiation factor 6-like protein; Provisional
Probab=100.00 E-value=1.8e-32 Score=236.28 Aligned_cols=127 Identities=17% Similarity=0.286 Sum_probs=121.2
Q ss_pred cCCCceeeEEEeeCcEEEEecCCChhHHHHHHhhhC--CeeEEEeeeCcceeeeEEEEcCCe------------------
Q 029868 40 ERLSALGNCIACNDHVALAHTDLDRETEEIIADVLG--VEVFRQTIAGNILVGSYCSFSNRG------------------ 99 (186)
Q Consensus 40 ~~~~aiGn~i~aND~~alVpp~l~~~~~~~I~d~Lg--VeVi~ttIags~lVGsl~vgNn~G------------------ 99 (186)
++.++||+|+++||+||++||+.++++.+.++++|+ +|+++|+|+||+++|+|++||+||
T Consensus 8 ~gs~~IGVf~~~t~~y~lvp~~~~~~~~~~~~~~L~~~v~vv~tsI~gs~lvG~l~~gN~nGllvp~~~~d~El~~l~~~ 87 (247)
T PTZ00136 8 ENSNDIGVFSKLTNSYCLVALGGSENFYSVFESELAPHIPVVHTTIGGTRVIGRLTVGNRKGLLVPSICTDQELQHLRNS 87 (247)
T ss_pred cCCCcEEEEEEEeCcEEEEcCCCCHHHHHHHHHHhcCCccEEEEEecCceeEEEEEeecCCeEEcCCcCCHHHHHHHHHh
Confidence 678999999999999999999999999999999999 999999999999999999999999
Q ss_pred ---------------------------EEeCCCCCHHHHHHHhhhcCcceeEEEeecCccceeeEEEEcCceEEEcCCCC
Q 029868 100 ---------------------------GLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTT 152 (186)
Q Consensus 100 ---------------------------~LV~p~~~deElk~l~d~l~V~v~~gtvn~g~~~VGs~ivaNd~GalV~p~tt 152 (186)
++|||+.+++..+.|++.|+|++.++++ +|.+.||+..++||+||+|||+++
T Consensus 88 l~d~v~V~~l~~~~saiGn~i~~ND~~alV~p~l~~~~~e~I~d~L~VeVi~~tI-ag~~lVGs~~v~Nn~G~LVhP~~s 166 (247)
T PTZ00136 88 LPDSVKVQRVEERLSALGNCIACNDYVALIHPDLDRETEEIIQDVLGVEVFRTTI-AGNVLVGTYCVFTNQGGLVHPKTS 166 (247)
T ss_pred CcCCccEEEeCCccccceeEEEEcCCEEEECCCCCHHHHHHHHHhhCCcEEEEEe-cCCceEEEEEEEeCcEEEECCCCC
Confidence 7888888888888888888888889998 999999999999999999999999
Q ss_pred HHHHHHHHHhhCCCC
Q 029868 153 ATELSVIESVFKLRE 167 (186)
Q Consensus 153 ~~Ei~~IedvL~V~~ 167 (186)
++|++.|+|+|||+.
T Consensus 167 ~ee~~~i~d~L~V~v 181 (247)
T PTZ00136 167 VQEMDELSSLLQVPL 181 (247)
T ss_pred HHHHHHHHHHhCCcE
Confidence 999999999999996
No 15
>TIGR00323 eIF-6 translation initiation factor eIF-6, putative. This model finds translation initiation factor eIF-6 of eukaryotes, which is a ribosome dissociation factor. It also finds a set of apparent archaeal orthologs, slightly shorter proteins not yet shown to act as initiation factors; these probably should be designated as translation initiation factor aIF-6, putative.
Probab=100.00 E-value=2e-32 Score=231.88 Aligned_cols=156 Identities=17% Similarity=0.203 Sum_probs=145.1
Q ss_pred hhhhhccCcceEEEecCcccccCCC------------CcEEEec---cCCCceeeEEEeeCcEEEEecCCChhHHHHHHh
Q 029868 8 HQLVATGLSGGFVLVTKMGFSCHTQ------------PQTKRIE---ERLSALGNCIACNDHVALAHTDLDRETEEIIAD 72 (186)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~l~~~------------~~v~~~~---~~~~aiGn~i~aND~~alVpp~l~~~~~~~I~d 72 (186)
-++..++++|.|...++--..+|.. +++.++. .+.+.||+|+++||+++++|+..+++..+.+++
T Consensus 2 ~~~~g~~~iGv~~~~~~~~~~vp~~~~~~~~~~~~e~l~v~i~~~~i~gs~~IGv~~~~n~~~~lvp~~~~~~~~~~l~e 81 (215)
T TIGR00323 2 TQFSGNPEIGVYAKVTEEYALVPVNGSENFYSAFEEELEVPVLHTTIAGSSLVGAMTAGNSRGLLVPDQVLDHELDSLPD 81 (215)
T ss_pred eeeeCCCCEEEEEEEeCcEEEEcCCCCHHHHHHHHHHhCCcEEEEEEcCCcceeEEEEEcCCEEEECCCcCHHHHHhhHh
Confidence 3567889999999999988888877 3343332 688999999999999999999999999999999
Q ss_pred hhCCeeEEEeeeCcceeeeEEEEcCCeEEeCCCCCHHHHHHHhhhcCcceeEEEeecCccceeeEEEEcCceEEEcCCCC
Q 029868 73 VLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTT 152 (186)
Q Consensus 73 ~LgVeVi~ttIags~lVGsl~vgNn~G~LV~p~~~deElk~l~d~l~V~v~~gtvn~g~~~VGs~ivaNd~GalV~p~tt 152 (186)
.|+|+++++++ +++|+++++||+|+|+||.++++|++.|++.|++++.+.++ ++.+.+|+.+++||+||+|||+++
T Consensus 82 ~l~V~~i~t~i---~~iGnli~~Nd~G~lv~~~~~~~e~~~i~~~L~v~V~~~~i-~~~~~vG~~~v~nN~G~lvhP~~s 157 (215)
T TIGR00323 82 SLKVQRIEERL---TALGNNILCNDYGALASPELDRDTEELISDVLGVEVFRGTI-AGLITVGSYAVVTNRGGLVHPQTS 157 (215)
T ss_pred hcCeEEEeeEE---EeeeeEEEEcCceEEeCCCCCHHHHHHHHHhcCCcEEEEec-ccccccceEEEEeCcEEEECCCCC
Confidence 99999999999 99999999999999999999999999999999999999887 999999999999999999999999
Q ss_pred HHHHHHHHHhhCCCC
Q 029868 153 ATELSVIESVFKLRE 167 (186)
Q Consensus 153 ~~Ei~~IedvL~V~~ 167 (186)
++|++.|+|+|||+.
T Consensus 158 ~ee~~~i~d~LgV~v 172 (215)
T TIGR00323 158 VQEQEELSSLLGVEL 172 (215)
T ss_pred HHHHHHHHHHhCCcE
Confidence 999999999999996
No 16
>KOG3185 consensus Translation initiation factor 6 (eIF-6) [Translation, ribosomal structure and biogenesis]
Probab=99.88 E-value=2.3e-22 Score=169.02 Aligned_cols=128 Identities=20% Similarity=0.299 Sum_probs=125.7
Q ss_pred cCCCceeeEEEeeCcEEEEecCCChhHHHHHHhhhC--CeeEEEeeeCcceeeeEEEEcCCeEEeCCCCCHHHHHHHhhh
Q 029868 40 ERLSALGNCIACNDHVALAHTDLDRETEEIIADVLG--VEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTL 117 (186)
Q Consensus 40 ~~~~aiGn~i~aND~~alVpp~l~~~~~~~I~d~Lg--VeVi~ttIags~lVGsl~vgNn~G~LV~p~~~deElk~l~d~ 117 (186)
++.+.||+|...++.||+|.-.-++.+...++..|+ +|++.|+|+|++++|++++||.+|+|||..++|+|+..|++.
T Consensus 8 ens~eiGvf~kLTNtYclva~ggS~nfys~~e~el~d~IPiV~tsI~g~riiGrl~~GNr~GLLvp~~tTDqElqHlRnS 87 (245)
T KOG3185|consen 8 ENSNEIGVFSKLTNTYCLVAIGGSENFYSAFEAELGDVIPIVHTSIGGTRIIGRLCVGNRHGLLVPHTTTDQELQHLRNS 87 (245)
T ss_pred cCCcceeeeeecccceEEEEecCchhHHHHHHHHhcCccceEEeeccceeeeehhhccCcCceecCCcCcHHHHHHHHhc
Confidence 567899999999999999999999999999999999 999999999999999999999999999999999999999999
Q ss_pred cCcceeEEEeecCccceeeEEEEcCceEEEcCCCCHHHHHHHHHhhCCCC
Q 029868 118 LQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATELSVIESVFKLRE 167 (186)
Q Consensus 118 l~V~v~~gtvn~g~~~VGs~ivaNd~GalV~p~tt~~Ei~~IedvL~V~~ 167 (186)
|+-+|...++....+++|+.+.|||+-|+|||+++.+.-+.|.|+|+|++
T Consensus 88 LPd~V~i~RveErlsALGNviaCNDyvAlvH~dldketEeii~dVL~VeV 137 (245)
T KOG3185|consen 88 LPDEVVIQRVEERLSALGNVIACNDYVALVHPDLDKETEEIIADVLKVEV 137 (245)
T ss_pred CCcceeeehhhhHHhhhcCEEEecceeEEecCccchhHHHHHHHHhheee
Confidence 99999999999999999999999999999999999999999999999998
No 17
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=59.22 E-value=23 Score=26.18 Aligned_cols=46 Identities=11% Similarity=0.164 Sum_probs=34.7
Q ss_pred EEEecCCChhHHHHHHhhhCCeeEEEeeeCcceeeeEEEEcCCeEEeCCCCCHHHHH-HHhhhcCccee
Q 029868 56 ALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLD-ELSTLLQVPLV 123 (186)
Q Consensus 56 alVpp~l~~~~~~~I~d~LgVeVi~ttIags~lVGsl~vgNn~G~LV~p~~~deElk-~l~d~l~V~v~ 123 (186)
.|..|-++++....+++. |...+.|+|.++..|++ .++..++|.|.
T Consensus 4 iI~~PviTEK~~~~~e~~----------------------n~y~F~V~~~anK~eIK~AvE~lf~VkV~ 50 (84)
T PRK14548 4 IIKYPLVTEKAMNLIEKE----------------------NKLTFIVDRRATKPDIKRAVEELFDVKVE 50 (84)
T ss_pred chhccccCHHHHHHHHhC----------------------CEEEEEECCCCCHHHHHHHHHHHhCCceE
Confidence 355677777766655432 67789999999999994 67778999983
No 18
>cd01972 Nitrogenase_VnfE_like Nitrogenase_VnfE_like: VnfE subunit of the VnfEN complex_like. This group in addition to VnfE contains a subset of the alpha subunit of the nitrogenase MoFe protein and NifE-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protein for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=58.54 E-value=21 Score=32.81 Aligned_cols=101 Identities=13% Similarity=0.066 Sum_probs=64.1
Q ss_pred hHHHHHHhhhCCeeEEEeeeCcceeeeEEEEcCCe-EEeCCCCCHHHHHHHhhhcCcceeEEEeecCccceeeEEEEcCc
Q 029868 65 ETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRG-GLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDW 143 (186)
Q Consensus 65 ~~~~~I~d~LgVeVi~ttIags~lVGsl~vgNn~G-~LV~p~~~deElk~l~d~l~V~v~~gtvn~g~~~VGs~ivaNd~ 143 (186)
..++.+=+.+|+++....=+|+++=-.-..++..- ++++|.....-.+.+++-+|++....
T Consensus 182 ~ei~~lL~~~Gi~v~~~~~~~~~~~ei~~~~~A~lniv~~~~~g~~~a~~Lee~~GiP~~~~------------------ 243 (426)
T cd01972 182 DEFKRLLNELGLRVNAIIAGGCSVEELERASEAAANVTLCLDLGYYLGAALEQRFGVPEIKA------------------ 243 (426)
T ss_pred HHHHHHHHHcCCeEEEEeCCCCCHHHHHhcccCCEEEEEChhHHHHHHHHHHHHhCCCeEec------------------
Confidence 44555666689999866444444433333444444 34466655666678888788886321
Q ss_pred eEEEcCCCCHHHHHHHHHhhCCCCCCCchhHHHHHHHhhhh
Q 029868 144 TAFCGSDTTATELSVIESVFKLREAQPNAIVDEMRKSLIDS 184 (186)
Q Consensus 144 GalV~p~tt~~Ei~~IedvL~V~~~~~~~~~~~~~~~~~~~ 184 (186)
..-+|++-|+.-++.|.+.||.+...+..| +++|+.+.+.
T Consensus 244 ~~P~G~~~T~~~l~~ia~~~g~~~~~e~~i-~~e~~~~~~~ 283 (426)
T cd01972 244 PQPYGIEATDKWLREIAKVLGMEAEAEAVI-EREHERVAPE 283 (426)
T ss_pred CCccCHHHHHHHHHHHHHHhCCcHHHHHHH-HHHHHHHHHH
Confidence 123588899999999999999865433334 6666665554
No 19
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=47.43 E-value=1.1e+02 Score=28.21 Aligned_cols=99 Identities=15% Similarity=0.190 Sum_probs=62.3
Q ss_pred hHHHHHHhhhCCeeEEE----eeeCcceeeeEEEE-------------cCCe-EEeCCCCCHHHHHHHhhhcCcceeEEE
Q 029868 65 ETEEIIADVLGVEVFRQ----TIAGNILVGSYCSF-------------SNRG-GLVHPHTSIEDLDELSTLLQVPLVAGT 126 (186)
Q Consensus 65 ~~~~~I~d~LgVeVi~t----tIags~lVGsl~vg-------------Nn~G-~LV~p~~~deElk~l~d~l~V~v~~gt 126 (186)
+.++.+=+.+|+++... ...+.++.|.+... +... ++++|.....-.+.+++-+|++.....
T Consensus 177 ~el~~lL~~~Gl~~~~~~d~s~~~d~~~~~~~~~~~gg~~~~~i~~~~~A~~niv~~~~~~~~~a~~Le~~~giP~~~~~ 256 (435)
T cd01974 177 REIKRLLELMGVDYTILPDTSDVLDTPADGEYRMYPGGTTLEELKDAGNAKATLALQEYATEKTAKFLEKKCKVPVETLN 256 (435)
T ss_pred HHHHHHHHHcCCCEEEecccccccCCCCCCCccccCCCCCHHHHHhhccCcEEEEECccccHHHHHHHHHHhCCCeeecC
Confidence 44555555689998642 22333333333222 2222 456787777778888988888863321
Q ss_pred eecCccceeeEEEEcCceEEEcCCCCHHHHHHHHHhhCCCCCCCchhHHHHHHHhhhh
Q 029868 127 VNRGSEVIGAGLTVNDWTAFCGSDTTATELSVIESVFKLREAQPNAIVDEMRKSLIDS 184 (186)
Q Consensus 127 vn~g~~~VGs~ivaNd~GalV~p~tt~~Ei~~IedvL~V~~~~~~~~~~~~~~~~~~~ 184 (186)
..+|.+-|+.-++.|.+.||.+. |..+ +++|+.+.|.
T Consensus 257 ------------------~p~G~~~t~~~l~~l~~~~g~~~--~~~i-~~er~~~~~~ 293 (435)
T cd01974 257 ------------------MPIGVAATDEFLMALSELTGKPI--PEEL-EEERGRLVDA 293 (435)
T ss_pred ------------------CCcChHHHHHHHHHHHHHhCCCC--CHHH-HHHHHHHHHH
Confidence 34688899999999999999864 3334 6666666654
No 20
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=44.08 E-value=33 Score=28.34 Aligned_cols=66 Identities=17% Similarity=0.190 Sum_probs=37.5
Q ss_pred CcceEEEecCcccccCCCCcEE-----Eecc---CCCceeeEEEeeCcEEEEecCCChhHHHHHHhhhCCeeEEEe
Q 029868 15 LSGGFVLVTKMGFSCHTQPQTK-----RIEE---RLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQT 82 (186)
Q Consensus 15 ~~~~~~~~~~~~~~l~~~~~v~-----~~~~---~~~aiGn~i~aND~~alVpp~l~~~~~~~I~d~LgVeVi~tt 82 (186)
.+++++.==|+++.-|..-.+. .+++ -+..=.++|..|+.+.-- +...+..+.+++.||+|+++-.
T Consensus 40 Gik~li~DkDNTL~~~~~~~i~~~~~~~~~~l~~~~~~~~v~IvSNsaGs~~--d~~~~~a~~~~~~lgIpvl~h~ 113 (168)
T PF09419_consen 40 GIKALIFDKDNTLTPPYEDEIPPEYAEWLNELKKQFGKDRVLIVSNSAGSSD--DPDGERAEALEKALGIPVLRHR 113 (168)
T ss_pred CceEEEEcCCCCCCCCCcCcCCHHHHHHHHHHHHHCCCCeEEEEECCCCccc--CccHHHHHHHHHhhCCcEEEeC
Confidence 4455554555555555543331 1222 111113566666544322 4567889999999999998765
No 21
>CHL00073 chlN photochlorophyllide reductase subunit N
Probab=43.78 E-value=26 Score=33.36 Aligned_cols=95 Identities=19% Similarity=0.175 Sum_probs=66.6
Q ss_pred hhHHHHHHhhhCCeeEEE-e---eeCcceeeeEEEEcCCeEEeCCCCCHHHHHHHhhhcCcceeEEEeecCccceeeEEE
Q 029868 64 RETEEIIADVLGVEVFRQ-T---IAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLT 139 (186)
Q Consensus 64 ~~~~~~I~d~LgVeVi~t-t---Iags~lVGsl~vgNn~G~LV~p~~~deElk~l~d~l~V~v~~gtvn~g~~~VGs~iv 139 (186)
...++.+-+-+|++|... + +..-+-+| .|-.=|+++|..+ +-...|++-++++... .++.
T Consensus 207 ~~~i~~lL~~lGI~v~~~lp~~~~~eL~~~~----~~~~~c~~~P~ls-~aa~~Le~~~gvp~~~------~P~P----- 270 (457)
T CHL00073 207 ASQLTLELKRQGIKVSGWLPSQRYTDLPSLG----EGVYVCGVNPFLS-RTATTLMRRRKCKLIG------APFP----- 270 (457)
T ss_pred HHHHHHHHHHcCCeEeEEeCCCCHHHHHhhC----cccEEEEcCcchH-HHHHHHHHHhCCceee------cCCc-----
Confidence 455666777788988622 1 22223333 3455589999999 7789998888988622 3333
Q ss_pred EcCceEEEcCCCCHHHHHHHHHhhCCCCCCCchhHHHHHHHhhhhc
Q 029868 140 VNDWTAFCGSDTTATELSVIESVFKLREAQPNAIVDEMRKSLIDSY 185 (186)
Q Consensus 140 aNd~GalV~p~tt~~Ei~~IedvL~V~~~~~~~~~~~~~~~~~~~~ 185 (186)
+|++-|+.-++.|.+.+|++ |..+ .++|..+.|++
T Consensus 271 -------iGi~~Td~fLr~Ia~~~G~~---pe~l-~~Er~rl~dal 305 (457)
T CHL00073 271 -------IGPDGTRAWIEKICSVFGIE---PQGL-EEREEQIWESL 305 (457)
T ss_pred -------CcHHHHHHHHHHHHHHhCcC---HHHH-HHHHHHHHHHH
Confidence 89999999999999999984 5556 66666666754
No 22
>COG0309 HypE Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=43.76 E-value=44 Score=30.85 Aligned_cols=77 Identities=17% Similarity=0.161 Sum_probs=55.6
Q ss_pred eEEEeeCcEEEEecCCChhHHHHHHhhhCCeeEEEeeeCcceeeeEEEEcCCeEEeCCCCCHHHHHHHhhh-------cC
Q 029868 47 NCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTL-------LQ 119 (186)
Q Consensus 47 n~i~aND~~alVpp~l~~~~~~~I~d~LgVeVi~ttIags~lVGsl~vgNn~G~LV~p~~~deElk~l~d~-------l~ 119 (186)
.+.+++|.|.+.|+-++... -|-=.+..+..+..+-|+--.-=+-+++++|..+.|+++++-+. +|
T Consensus 50 ~la~tTD~~~i~P~ff~~~d-------iG~lAV~gt~NDlav~GA~P~~l~~~lil~eg~~~e~l~~i~~si~e~a~~~G 122 (339)
T COG0309 50 VLAFTTDPFVIDPLFFPGGD-------IGKLAVHGTANDVAVSGAKPRYLSVGLILPEGLPIEDLERILKSIDEEAEEAG 122 (339)
T ss_pred eEEEEeCCeEecccccCCCc-------eEEEEEEEehhhhhhcCCCceeeeEeEecCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 79999999999999987752 12234556666666666665556677999999999999877554 67
Q ss_pred cceeE---EEeecC
Q 029868 120 VPLVA---GTVNRG 130 (186)
Q Consensus 120 V~v~~---gtvn~g 130 (186)
|.++. +.+..+
T Consensus 123 v~IvtGdTkV~~~~ 136 (339)
T COG0309 123 VSIVTGDTKVVPGG 136 (339)
T ss_pred CeEEccCceeecCC
Confidence 77754 344444
No 23
>PF02274 Amidinotransf: Amidinotransferase; InterPro: IPR003198 This family contains glycine and inosamine amidinotransferases, enzymes which are involved in creatine and streptomycin biosynthesis respectively. This family also includes arginine deiminases, which catalyse the reversible reaction: arginine + H2O = citrulline + NH3 The Streptococcus anti-tumour glycoprotein is also found in this family [].; GO: 0016813 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines, 0005737 cytoplasm; PDB: 2CI7_A 2CI1_A 2CI4_A 2CI3_A 2CI5_A 2C6Z_A 2CI6_A 3I4A_B 3I2E_B 2JAI_A ....
Probab=43.21 E-value=1.7e+02 Score=24.76 Aligned_cols=125 Identities=16% Similarity=0.122 Sum_probs=73.9
Q ss_pred cCCCceeeEEEeeCcEEE--EecCCChhHHHHHHhhhCCe------eEEEee---eCcceeeeEEEEcCCeEEeCCCCCH
Q 029868 40 ERLSALGNCIACNDHVAL--AHTDLDRETEEIIADVLGVE------VFRQTI---AGNILVGSYCSFSNRGGLVHPHTSI 108 (186)
Q Consensus 40 ~~~~aiGn~i~aND~~al--Vpp~l~~~~~~~I~d~LgVe------Vi~ttI---ags~lVGsl~vgNn~G~LV~p~~~d 108 (186)
..+.- |.++...++..+ ++.-.+++.++.+++.|+-. +....- .-..+=-.++....+-++++|.+-+
T Consensus 118 ~~lEG-GDv~~~~~~~~v~G~g~RTn~~g~~~l~~~l~~~~~~~~v~~~~~~~~~~~~HLD~~~~~l~~~~~l~~~~~~~ 196 (281)
T PF02274_consen 118 GYLEG-GDVLVLGDNVLVIGVGSRTNEEGIEQLARALGEEEVVFEVVVVVVPVDPGFLHLDTVFNPLDPDLVLVYPDAFD 196 (281)
T ss_dssp S-B-G-GGEEEESTEEEEEEESSSS-HHHHHHHHHHHCCTTSESEEEEEEEEECSSSSSGGGTEEEEETTEEEEECCHHC
T ss_pred ceecC-cEEEEECCEEEEEeecCCCCHHHHHHHHHHhcccccccccceeeccCccCccccceEEEEcCCCEEEEeCcccc
Confidence 44555 888888877776 67778889999999999977 222222 2233445677777888888888765
Q ss_pred HH-HHHHhhhcC---cceeEEEeecCccceeeEEEEcCceEEEcCCCCHHHHHHHHHhhCCCC
Q 029868 109 ED-LDELSTLLQ---VPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATELSVIESVFKLRE 167 (186)
Q Consensus 109 eE-lk~l~d~l~---V~v~~gtvn~g~~~VGs~ivaNd~GalV~p~tt~~Ei~~IedvL~V~~ 167 (186)
++ .+.+.+.|+ .+++.-+-.....+-+|.+..++.-+++... .....+.+++. |+++
T Consensus 197 ~~~~~~l~~~l~~~~~~iI~v~~~e~~~~~~N~l~l~~~~vi~~~~-~~~~~~~L~~~-G~~v 257 (281)
T PF02274_consen 197 PEEEEELEQALKERGFEIIEVPEEEQWNFACNVLSLGPGKVIAYAS-NPRTNEQLEKA-GIEV 257 (281)
T ss_dssp THHHHHHHHHHSSSTCEEEEESSCSCSGGGGS-EEECTTEEEEETT-HHHHHHHHHHT-T-EE
T ss_pred hHHHHHHHHHhcccCcEEEEeccchhhhccCCEEEecCCEEEECCC-CHHHHHHHHhc-CCeE
Confidence 54 666777655 4554444333345556666776555554443 33343444433 5543
No 24
>PF13167 GTP-bdg_N: GTP-binding GTPase N-terminal
Probab=43.01 E-value=71 Score=24.05 Aligned_cols=60 Identities=17% Similarity=0.278 Sum_probs=44.8
Q ss_pred HHHHHHHhhhcCcceeEEEe-----ecCccceeeEEE---------EcCceEEEcCCCCHHHHHHHHHhhCCCC
Q 029868 108 IEDLDELSTLLQVPLVAGTV-----NRGSEVIGAGLT---------VNDWTAFCGSDTTATELSVIESVFKLRE 167 (186)
Q Consensus 108 deElk~l~d~l~V~v~~gtv-----n~g~~~VGs~iv---------aNd~GalV~p~tt~~Ei~~IedvL~V~~ 167 (186)
=+|++.|.+..|.++....+ ....+++|+|=+ .+-.-+++..++|......+++.||+++
T Consensus 10 l~El~~L~~t~g~~vv~~~~q~~~~~~p~~~iG~GK~eei~~~~~~~~~d~vvfd~~Lsp~Q~rNLe~~~~~~V 83 (95)
T PF13167_consen 10 LEELEELAETAGYEVVGTVVQKRRKPDPKTYIGSGKVEEIKELIEELDADLVVFDNELSPSQQRNLEKALGVKV 83 (95)
T ss_pred HHHHHHHHHHCCCeEEEEEEecCCCCCcceeechhHHHHHHHHHhhcCCCEEEECCCCCHHHHHHHHHHHCCee
Confidence 46888888889998854222 134568888743 3445578888999999999999999987
No 25
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=42.77 E-value=45 Score=27.23 Aligned_cols=45 Identities=11% Similarity=0.097 Sum_probs=38.2
Q ss_pred EEEecCCChhHHHHHHhhhCCeeEEEeeeCcceeeeEEEEcCCeEEeCCCCCHHHHH-HHhhhcCcce
Q 029868 56 ALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLD-ELSTLLQVPL 122 (186)
Q Consensus 56 alVpp~l~~~~~~~I~d~LgVeVi~ttIags~lVGsl~vgNn~G~LV~p~~~deElk-~l~d~l~V~v 122 (186)
.|..|-++++....+++. |-.-++|++.++..|++ .++.+++|.|
T Consensus 65 IIk~Pl~TEKa~~~~E~~----------------------N~yvF~Vd~kAnK~qIK~AVEklf~VkV 110 (145)
T PTZ00191 65 IIKYPLTTEKAMKKIEDN----------------------NTLVFIVDQRANKTQIKKAVEKLYDVKV 110 (145)
T ss_pred hhhcccccHHHHHHHhhC----------------------CEEEEEEcCCCCHHHHHHHHHHHhCCee
Confidence 567899999999888775 66779999999999995 6777899998
No 26
>TIGR01286 nifK nitrogenase molybdenum-iron protein beta chain. This model represents the majority of known sequences of the nitrogenase molybdenum-iron protein beta subunit. A distinct clade in a phylogenetic tree contains molybdenum-iron, vanadium-iron, and iron-iron forms of nitrogenase beta subunit and is excluded from this model. Nitrogenase, also called dinitrogenase, is responsible for nitrogen fixation. Note: the trusted cutoff score has recently been lowered to include an additional family in which the beta subunit is shorter by about 50 amino acids at the N-terminus. In species with the shorter form of the beta subunit, the alpha subunit has a novel insert of similar length.
Probab=41.23 E-value=63 Score=31.03 Aligned_cols=112 Identities=14% Similarity=0.129 Sum_probs=67.7
Q ss_pred eCcEEEEecCCC-----hhHHHHHHhhhCCeeEEEe----e-------------eCcceeeeEEEEcCCe-EEeCCCCCH
Q 029868 52 NDHVALAHTDLD-----RETEEIIADVLGVEVFRQT----I-------------AGNILVGSYCSFSNRG-GLVHPHTSI 108 (186)
Q Consensus 52 ND~~alVpp~l~-----~~~~~~I~d~LgVeVi~tt----I-------------ags~lVGsl~vgNn~G-~LV~p~~~d 108 (186)
++++-|+| ++. -..++.+=+.+|+++.-.. . +|+++=-.--+.|... ++++|....
T Consensus 220 ~~~VNii~-g~~~~~gd~~eikrlL~~~Gi~~~~l~d~s~~~d~p~~g~~~~~~ggttleei~~a~~A~~~ivl~~~~~~ 298 (515)
T TIGR01286 220 NGKINIIP-GFETYIGNFREIKRILSLMGVGYTLLSDPEEVLDTPADGEFRMYAGGTTLEEMKDAPNAEATVLLQPYTLR 298 (515)
T ss_pred CCeEEEEC-CCCCCchhHHHHHHHHHHcCCCeEEccCccccccCCCCCCccccCCCCCHHHHHHhhhCcEEEEEchhhhH
Confidence 45666664 221 2445556667788877421 1 2222222222223333 556777777
Q ss_pred HHHHHHhhhcCcceeEEEeecCccceeeEEEEcCceEEEcCCCCHHHHHHHHHhhCCCCCCCchhHHHHHHHhhhhc
Q 029868 109 EDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATELSVIESVFKLREAQPNAIVDEMRKSLIDSY 185 (186)
Q Consensus 109 eElk~l~d~l~V~v~~gtvn~g~~~VGs~ivaNd~GalV~p~tt~~Ei~~IedvL~V~~~~~~~~~~~~~~~~~~~~ 185 (186)
.-.+.+++.+|++... .+. -+|.+-|+.-++.|.+.+|.+. |..+ ..+|..+.|++
T Consensus 299 ~~a~~l~~~~g~p~~~----~~~--------------PiGi~~Td~fL~~la~~~g~~i--p~~i-~~eR~rl~dam 354 (515)
T TIGR01286 299 KTKEYIEKTWKQETPK----LNI--------------PLGVKGTDEFLMKVSEISGQPI--PAEL-TKERGRLVDAM 354 (515)
T ss_pred HHHHHHHHHhCCCccc----CCC--------------CccHHHHHHHHHHHHHHHCCCC--CHHH-HHHHHHHHHHH
Confidence 7778888888887621 222 2788899999999999999864 3445 56666677653
No 27
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=38.77 E-value=46 Score=24.18 Aligned_cols=28 Identities=14% Similarity=0.221 Sum_probs=23.6
Q ss_pred cCCeEEeCCCCCHHHHH-HHhhhcCccee
Q 029868 96 SNRGGLVHPHTSIEDLD-ELSTLLQVPLV 123 (186)
Q Consensus 96 Nn~G~LV~p~~~deElk-~l~d~l~V~v~ 123 (186)
|..-+.|+|.++..|++ .++..++|+|.
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~ 43 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVE 43 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceE
Confidence 56679999999999995 67778999983
No 28
>cd01966 Nitrogenase_NifN_1 Nitrogenase_nifN1: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=37.89 E-value=85 Score=29.02 Aligned_cols=69 Identities=14% Similarity=0.175 Sum_probs=44.6
Q ss_pred cCCeEEeCCCCCHHHHHHHhhhcCcceeEEEeecCccceeeEEEEcCceEEEcCCCCHHHHHHHHHhhCCCCCCCchhHH
Q 029868 96 SNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATELSVIESVFKLREAQPNAIVD 175 (186)
Q Consensus 96 Nn~G~LV~p~~~deElk~l~d~l~V~v~~gtvn~g~~~VGs~ivaNd~GalV~p~tt~~Ei~~IedvL~V~~~~~~~~~~ 175 (186)
|..--|+-......-.+.+++-+|++..... ..+|.+-|+.-++.|.+.||.+. |..+ .
T Consensus 223 ~A~lniv~~~~~~~~a~~Lee~~GiP~~~~~------------------~p~G~~~T~~~L~~la~~~g~~~--~~~i-~ 281 (417)
T cd01966 223 RSAATLAIGESMRKAAEALEERTGVPYYVFP------------------SLTGLEAVDALIATLAKLSGRPV--PEKI-R 281 (417)
T ss_pred cCeEEEEECHHHHHHHHHHHHHHCCCeeecC------------------CCcchHHHHHHHHHHHHHHCCCc--CHHH-H
Confidence 4444333333334556888888888863211 23478889999999999999875 5555 5
Q ss_pred HHHHHhhhhc
Q 029868 176 EMRKSLIDSY 185 (186)
Q Consensus 176 ~~~~~~~~~~ 185 (186)
++|+.++|.+
T Consensus 282 ~er~~~~~~~ 291 (417)
T cd01966 282 RQRAQLQDAM 291 (417)
T ss_pred HHHHHHHHHH
Confidence 5566677653
No 29
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=35.94 E-value=89 Score=28.48 Aligned_cols=100 Identities=12% Similarity=0.166 Sum_probs=56.4
Q ss_pred HHHHHHhhhCCeeEEEeeeCcceeeeEEEEcCCeEE-eCCCCCHHHHHHHhhhcCcceeEEEeecCccceeeEEEEcCce
Q 029868 66 TEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGL-VHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWT 144 (186)
Q Consensus 66 ~~~~I~d~LgVeVi~ttIags~lVGsl~vgNn~G~L-V~p~~~deElk~l~d~l~V~v~~gtvn~g~~~VGs~ivaNd~G 144 (186)
.++.+=+.+|+++....-+++++=-..-.++..--| +.|.....-.+.|++-+|++... .
T Consensus 175 el~~lL~~~Gl~v~~~~~~~~s~eei~~~~~A~lniv~~~~~~~~~a~~L~~~fGip~~~-------------------~ 235 (410)
T cd01968 175 GVKPLLEKLGIRVLASITGDSRVDEIRRAHRAKLNVVQCSKSMIYLARKMEEKYGIPYIE-------------------V 235 (410)
T ss_pred HHHHHHHHcCCeEEEEeCCCCCHHHHHhhhhCcEEEEEchhHHHHHHHHHHHHhCCCeEe-------------------c
Confidence 445555568999876533332222222223333333 23443344456666666666521 1
Q ss_pred EEEcCCCCHHHHHHHHHhhCCCC--CCCchhHHHHHHHhhhh
Q 029868 145 AFCGSDTTATELSVIESVFKLRE--AQPNAIVDEMRKSLIDS 184 (186)
Q Consensus 145 alV~p~tt~~Ei~~IedvL~V~~--~~~~~~~~~~~~~~~~~ 184 (186)
...|.+-|+.-++.|.+.||.+. +.+...++++|+.+.|.
T Consensus 236 ~p~G~~~t~~~l~~ia~~~g~~~~~~~~~~~i~~e~~~~~~~ 277 (410)
T cd01968 236 SFYGIRDTSKSLRNIAELLGDEELIERTEELIAREEARLRPE 277 (410)
T ss_pred CcCcHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHH
Confidence 24688999999999999999874 33334446666666554
No 30
>TIGR01862 N2-ase-Ialpha nitrogenase component I, alpha chain. This model represents the alpha chain of all three varieties (Mo-Fe, V-Fe, and Fe-Fe) of component I of nitrogenase.
Probab=35.85 E-value=53 Score=30.56 Aligned_cols=97 Identities=16% Similarity=0.193 Sum_probs=56.5
Q ss_pred HHHHHHhhhCCeeEEEeeeCcceeeeEEEEcCCeEE-eCCCCCHHHHHHHhhhcCcceeEEEeecCccceeeEEEEcCce
Q 029868 66 TEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGL-VHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWT 144 (186)
Q Consensus 66 ~~~~I~d~LgVeVi~ttIags~lVGsl~vgNn~G~L-V~p~~~deElk~l~d~l~V~v~~gtvn~g~~~VGs~ivaNd~G 144 (186)
.++.+=+.+|+++....-+++++=-.--.++..--| +.|.....-.+.+++-+|++.... +
T Consensus 208 el~~lL~~~Gl~v~~~~~~~~t~eei~~~~~A~lniv~~~~~~~~~A~~L~er~GiP~~~~----------------~-- 269 (443)
T TIGR01862 208 VMRIYLEEMGIQVVATFTGDGTYDEIRLMHKAKLNLVHCARSANYIANELEERYGIPWMKI----------------D-- 269 (443)
T ss_pred HHHHHHHHcCCeEEEEECCCCCHHHHHhcccCCEEEEEChHHHHHHHHHHHHHhCCCeEec----------------c--
Confidence 344455567999886554444331111223333333 466555555678888778876321 1
Q ss_pred EEEcCCCCHHHHHHHHHhhCCCCCCCchhHHHHHHHhh
Q 029868 145 AFCGSDTTATELSVIESVFKLREAQPNAIVDEMRKSLI 182 (186)
Q Consensus 145 alV~p~tt~~Ei~~IedvL~V~~~~~~~~~~~~~~~~~ 182 (186)
..|.+-|+.-++.|.+.||++... ...++++++.+.
T Consensus 270 -p~G~~~t~~~l~~la~~~gi~~~~-e~~i~~~~~~~~ 305 (443)
T TIGR01862 270 -FFGFTYTAESLRAIAAFFGIEKRA-EEVIAEEKAKWK 305 (443)
T ss_pred -cCCHHHHHHHHHHHHHHhCCcHHH-HHHHHHHHHHHH
Confidence 247788899999999999976542 223455555443
No 31
>cd01967 Nitrogenase_MoFe_alpha_like Nitrogenase_MoFe_alpha_like: Nitrogenase MoFe protein, alpha subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. Three genetically distinct types of nitrogenase systems are known to exist: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). This group contains the alpha subunit of component 1 of all three different forms. The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. The role of the delta subunit is unknown. For MoFe, each alphabeta pair of subunits contains one
Probab=35.80 E-value=75 Score=28.61 Aligned_cols=99 Identities=15% Similarity=0.125 Sum_probs=59.8
Q ss_pred hHHHHHHhhhCCeeEEEeeeCcceeeeEEEEcCCeEE-eCCCCCHHHHHHHhhhcCcceeEEEeecCccceeeEEEEcCc
Q 029868 65 ETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGL-VHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDW 143 (186)
Q Consensus 65 ~~~~~I~d~LgVeVi~ttIags~lVGsl~vgNn~G~L-V~p~~~deElk~l~d~l~V~v~~gtvn~g~~~VGs~ivaNd~ 143 (186)
+.++.+=+.+|+++....=+++++==.-..++..--+ ++|.....-.+.|++-+|++...
T Consensus 176 ~el~~lL~~~Gi~~~~~~~~~~~~~~i~~~~~A~~niv~~~~~~~~~a~~L~~r~GiP~~~------------------- 236 (406)
T cd01967 176 WVIKPLLEELGIRVNATFTGDGTVDELRRAHRAKLNLVHCSRSMNYLAREMEERYGIPYME------------------- 236 (406)
T ss_pred HHHHHHHHHcCCEEEEEeCCCCCHHHHhhCccCCEEEEEChHHHHHHHHHHHHhhCCCEEE-------------------
Confidence 4455555668899885443444333333344444434 45655566667777777777621
Q ss_pred eEEEcCCCCHHHHHHHHHhhCCCCCCCchhHHHHHHHhhh
Q 029868 144 TAFCGSDTTATELSVIESVFKLREAQPNAIVDEMRKSLID 183 (186)
Q Consensus 144 GalV~p~tt~~Ei~~IedvL~V~~~~~~~~~~~~~~~~~~ 183 (186)
....+.+.|+..++.|.+.||.+...+..+ +.+|+.+.+
T Consensus 237 ~~p~G~~~t~~~l~~l~~~lg~~~~~~~~i-~~~~~~~~~ 275 (406)
T cd01967 237 VNFYGFEDTSESLRKIAKFFGDEEKAEEVI-AEEEARIKP 275 (406)
T ss_pred ecCCcHHHHHHHHHHHHHHhCCHHHHHHHH-HHHHHHHHH
Confidence 113478899999999999999854333333 555555544
No 32
>COG2052 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.67 E-value=43 Score=24.97 Aligned_cols=59 Identities=12% Similarity=0.159 Sum_probs=40.2
Q ss_pred eeeEEEeeCcEEEEecCCChhHHHHHHhhhCC-eeEEEeeeCcceeeeEEEEcCCeEEeCCCC
Q 029868 45 LGNCIACNDHVALAHTDLDRETEEIIADVLGV-EVFRQTIAGNILVGSYCSFSNRGGLVHPHT 106 (186)
Q Consensus 45 iGn~i~aND~~alVpp~l~~~~~~~I~d~LgV-eVi~ttIags~lVGsl~vgNn~G~LV~p~~ 106 (186)
.||.+.+|--+|+|+|+-. ...+.|.|.=+- ..+..|.+.- --+..+.-++-.++|---
T Consensus 10 FGNivsanRviaIVsPESa-PiKRii~eArdr~~LIDATYGRr--TRavii~DS~hvILSAiQ 69 (89)
T COG2052 10 FGNIVSANRVIAIVSPESA-PIKRIIQEARDRGMLIDATYGRR--TRAVIITDSDHVILSAIQ 69 (89)
T ss_pred cccEeecceEEEEECCCcc-cHHHHHHHHHhcCcEEEcccCce--eeEEEEecCCcEEEeccC
Confidence 5899999999999999954 467777777653 3566665543 234555666666665443
No 33
>TIGR01284 alt_nitrog_alph nitrogenase alpha chain. This model represents the alpha chains of various forms of the nitrogen-fixing enzyme nitrogenase: vanadium-iron, iron-iron, and molybdenum-iron. Most examples of NifD, the molybdenum-iron type nitrogenase alpha chain, are excluded from this model and described instead by equivalog model TIGR01282. It appears by phylogenetic and UPGMA trees that this model represents a distinct clade of NifD homologs, in which arose several molybdenum-independent forms.
Probab=32.22 E-value=1.1e+02 Score=28.77 Aligned_cols=83 Identities=16% Similarity=0.199 Sum_probs=54.0
Q ss_pred HHHHHhhhCCeeEEEeeeCcceeeeEEEEcCCeEEe-CCCCCHHHHHHHhhhcCcceeEEEeecCccceeeEEEEcCceE
Q 029868 67 EEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLV-HPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTA 145 (186)
Q Consensus 67 ~~~I~d~LgVeVi~ttIags~lVGsl~vgNn~G~LV-~p~~~deElk~l~d~l~V~v~~gtvn~g~~~VGs~ivaNd~Ga 145 (186)
++.+=+.+|+++....-+++++=-.-.+++..--|+ .+.....-.+.+++-+|++... .+
T Consensus 217 l~~lL~~~Gl~v~~~~~g~~s~~ei~~~~~A~lniv~~~~~~~~~A~~Le~~~GiP~~~---------------~~---- 277 (457)
T TIGR01284 217 LKKYFERMGIQVLSTFTGNGCYDELRWMHRAKLNVVRCARSANYIANELEERYGIPRLD---------------ID---- 277 (457)
T ss_pred HHHHHHHcCCeEEEEECCCCCHHHHHhccccCEEEEEChHHHHHHHHHHHHHhCCCeEe---------------cc----
Confidence 444445578999865555554433344445555444 5555555667888888888632 11
Q ss_pred EEcCCCCHHHHHHHHHhhCCCCC
Q 029868 146 FCGSDTTATELSVIESVFKLREA 168 (186)
Q Consensus 146 lV~p~tt~~Ei~~IedvL~V~~~ 168 (186)
..|.+-|+.-++.|.+.||+++.
T Consensus 278 ~~G~~~T~~~l~~ia~~~g~~~~ 300 (457)
T TIGR01284 278 FFGFEYCAKNLRKIGEFFGIEER 300 (457)
T ss_pred cCCHHHHHHHHHHHHHHhCCchh
Confidence 26788899999999999998754
No 34
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=32.11 E-value=92 Score=28.95 Aligned_cols=63 Identities=16% Similarity=0.184 Sum_probs=42.4
Q ss_pred EEeCCCCCHHHHHHHhhhcCcceeEEEeecCccceeeEEEEcCceEEEcCCCCHHHHHHHHHhhCCCCCCCchhHHHHHH
Q 029868 100 GLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATELSVIESVFKLREAQPNAIVDEMRK 179 (186)
Q Consensus 100 ~LV~p~~~deElk~l~d~l~V~v~~gtvn~g~~~VGs~ivaNd~GalV~p~tt~~Ei~~IedvL~V~~~~~~~~~~~~~~ 179 (186)
++++|.. ..-.+.+++-+|++..... ..+|.+.|+.-++.|.+.||.+ .|..+ +++|+
T Consensus 239 iv~~~~~-~~~a~~Lee~~giP~~~~~------------------~p~G~~~t~~~l~~l~~~~g~~--~~~~~-~~~r~ 296 (432)
T TIGR01285 239 LAIGESM-RRAASLLADRCGVPYIVFP------------------SLMGLEAVDAFLHVLMKISGRA--VPERF-ERQRR 296 (432)
T ss_pred EEEChhH-HHHHHHHHHHHCCCeEecC------------------CCcChHHHHHHHHHHHHHHCCC--ccHHH-HHHHH
Confidence 4445543 5556888888888863211 1357888999999999999984 33344 66676
Q ss_pred Hhhhh
Q 029868 180 SLIDS 184 (186)
Q Consensus 180 ~~~~~ 184 (186)
.+.|+
T Consensus 297 ~~~~~ 301 (432)
T TIGR01285 297 QLQDA 301 (432)
T ss_pred HHHHH
Confidence 66665
No 35
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=31.23 E-value=1e+02 Score=28.70 Aligned_cols=100 Identities=13% Similarity=0.222 Sum_probs=60.5
Q ss_pred HHHHHHhhhCCeeEEEeeeCcceeeeEEEEcCCeEEe-CCCCCHHHHHHHhhhcCcceeEEEeecCccceeeEEEEcCce
Q 029868 66 TEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLV-HPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWT 144 (186)
Q Consensus 66 ~~~~I~d~LgVeVi~ttIags~lVGsl~vgNn~G~LV-~p~~~deElk~l~d~l~V~v~~gtvn~g~~~VGs~ivaNd~G 144 (186)
.++.+=+.+|+++....-+++++=-...+.+..--|| .+.....-.+.+++-+|++... +
T Consensus 214 el~~lL~~~Gl~v~~~~~~~~s~eei~~~~~A~lniv~~~~~~~~~a~~L~e~~GiP~~~-------------------~ 274 (456)
T TIGR01283 214 HVKPLLEKLGIRVLATITGDSRYAEVQTAHRAKLNMVQCSKSMINLARKMEEKYGIPYFE-------------------G 274 (456)
T ss_pred HHHHHHHHcCCeEEEEeCCCCcHHHHHhcccCcEEEEECHhHHHHHHHHHHHHcCCCEEe-------------------c
Confidence 4555556689999875444443333334444554444 4544445567777777777631 1
Q ss_pred EEEcCCCCHHHHHHHHHhhCCCC--CCCchhHHHHHHHhhhh
Q 029868 145 AFCGSDTTATELSVIESVFKLRE--AQPNAIVDEMRKSLIDS 184 (186)
Q Consensus 145 alV~p~tt~~Ei~~IedvL~V~~--~~~~~~~~~~~~~~~~~ 184 (186)
...|.+-|+.-++.|.+.||.+. +.....++++++.+.+.
T Consensus 275 ~~~G~~~T~~~L~~Ia~~lg~~~~~~~~~~~i~~e~~~~~~~ 316 (456)
T TIGR01283 275 SFYGIEDTSKALRDIADLFGDEELLKRTEELIAREEAKIRPA 316 (456)
T ss_pred CCCcHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHH
Confidence 24678889999999999999642 22233446666665544
No 36
>PRK05738 rplW 50S ribosomal protein L23; Reviewed
Probab=31.10 E-value=68 Score=23.81 Aligned_cols=28 Identities=14% Similarity=0.174 Sum_probs=23.5
Q ss_pred cCCeEEeCCCCCHHHHH-HHhhhcCccee
Q 029868 96 SNRGGLVHPHTSIEDLD-ELSTLLQVPLV 123 (186)
Q Consensus 96 Nn~G~LV~p~~~deElk-~l~d~l~V~v~ 123 (186)
|-.-+.|+|.++..|++ .++++++|+|.
T Consensus 21 n~~~F~V~~~a~K~eIK~aie~lf~VkV~ 49 (92)
T PRK05738 21 NKYVFEVAPDATKPEIKAAVEKLFGVKVE 49 (92)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHcCCcee
Confidence 55678999999999994 67888999983
No 37
>PRK01388 arginine deiminase; Provisional
Probab=29.89 E-value=4.7e+02 Score=24.46 Aligned_cols=119 Identities=14% Similarity=0.114 Sum_probs=79.0
Q ss_pred eeEEEeeCcEEEE--ecCCChhHHHHHHhhh-----CCeeEEEeeeCc----ceeeeEEEEcCCeEEeCCCCCH------
Q 029868 46 GNCIACNDHVALA--HTDLDRETEEIIADVL-----GVEVFRQTIAGN----ILVGSYCSFSNRGGLVHPHTSI------ 108 (186)
Q Consensus 46 Gn~i~aND~~alV--pp~l~~~~~~~I~d~L-----gVeVi~ttIags----~lVGsl~vgNn~G~LV~p~~~d------ 108 (186)
|-++..++++.++ +.-.+++.++.+++.| +-+|+...+.++ .|=..|...-.+=++++|.+.+
T Consensus 217 GDvl~l~~~~l~IG~s~RTn~~gie~La~~l~~~~~~~~Vi~v~ip~~r~~mHLDtvft~vd~d~~l~~p~~~~~~~~~~ 296 (406)
T PRK01388 217 GDVLVLGKGVVAIGMSERTSPQAIEQLARSLFKKGAAKRVLAVEIPKSRAFMHLDTVFTMVDYDKFTVYPEIVGDLNAFS 296 (406)
T ss_pred ceEEEECCCEEEEEecccCCHHHHHHHHHHHhhcCCCcEEEEEeccCCCCceeCCccccccCCCeEEEehhhccCceeEE
Confidence 6777777777664 4556677888888877 346877777554 5667777777777888887632
Q ss_pred -----------------HHHHHHhhhcCcc-eeEEEeecCcc---------ceeeEEEEcCceEEEcCCCCHHHHHHHHH
Q 029868 109 -----------------EDLDELSTLLQVP-LVAGTVNRGSE---------VIGAGLTVNDWTAFCGSDTTATELSVIES 161 (186)
Q Consensus 109 -----------------eElk~l~d~l~V~-v~~gtvn~g~~---------~VGs~ivaNd~GalV~p~tt~~Ei~~Ied 161 (186)
.-.+.|++.+|.+ + ..|..|.. .-|+-+++=..|.++.++-.....+.+++
T Consensus 297 ~~~~~~~~~~~~~~~~~~l~~~L~~~lg~~~~--~lI~~ggd~~~~~~Eq~~~g~N~l~i~pg~Vv~~~~n~~t~~~L~~ 374 (406)
T PRK01388 297 LTPDDDGGGLDIREEKAPFLEVLAEALGLDKL--RVIETGGDDIAAEREQWNDGNNTLAIAPGVVVAYDRNTVTNALLRK 374 (406)
T ss_pred EecCCCCCceeEeccCcCHHHHHHHHhCCCCc--eEEecCCCcccchHHHHhcCCCEEEecCCEEEEeCCcHHHHHHHHH
Confidence 2346677777765 2 22333211 12666677788888888877777666665
Q ss_pred hhCCCC
Q 029868 162 VFKLRE 167 (186)
Q Consensus 162 vL~V~~ 167 (186)
. |+++
T Consensus 375 ~-G~~v 379 (406)
T PRK01388 375 A-GIEV 379 (406)
T ss_pred C-CCEE
Confidence 4 7765
No 38
>CHL00030 rpl23 ribosomal protein L23
Probab=29.22 E-value=79 Score=23.74 Aligned_cols=28 Identities=7% Similarity=0.088 Sum_probs=23.3
Q ss_pred cCCeEEeCCCCCHHHHH-HHhhhcCccee
Q 029868 96 SNRGGLVHPHTSIEDLD-ELSTLLQVPLV 123 (186)
Q Consensus 96 Nn~G~LV~p~~~deElk-~l~d~l~V~v~ 123 (186)
|..-+.|++.++..|++ .++.+++|.|.
T Consensus 20 n~y~F~V~~~anK~eIK~avE~lf~VkV~ 48 (93)
T CHL00030 20 NQYTFDVDSGSTKTEIKHWIELFFGVKVI 48 (93)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCeEE
Confidence 56679999999999995 67778999983
No 39
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=28.18 E-value=1.2e+02 Score=27.94 Aligned_cols=101 Identities=15% Similarity=0.160 Sum_probs=57.9
Q ss_pred HHHHHHhhhCCeeEEEeeeCcceeeeEEEEcCCeEE-eCCCCCHHHHHHHhhhcCcceeEEEeecCccceeeEEEEcCce
Q 029868 66 TEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGL-VHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWT 144 (186)
Q Consensus 66 ~~~~I~d~LgVeVi~ttIags~lVGsl~vgNn~G~L-V~p~~~deElk~l~d~l~V~v~~gtvn~g~~~VGs~ivaNd~G 144 (186)
.++.+=+.+|+++....-+|+++=-.--..+..--+ +.|.....-.+.+++-+|++... .
T Consensus 189 el~~lL~~~Gi~v~~~~~~~~t~eei~~~~~A~lniv~~~~~~~~~a~~Le~~fGiP~~~---------------~---- 249 (421)
T cd01976 189 ASRILLEEMGLRVVAQWSGDGTLNEMENAHKAKLNLIHCYRSMNYIARMMEEKYGIPWME---------------Y---- 249 (421)
T ss_pred HHHHHHHHcCCeEEEEeCCCCCHHHHHhcccCCEEEEECcHHHHHHHHHHHHHhCCcEEe---------------c----
Confidence 355555668999885443333322222233333333 33443333356677767777522 1
Q ss_pred EEEcCCCCHHHHHHHHHhhCCCC-CCCchhHHHHHHHhhhhc
Q 029868 145 AFCGSDTTATELSVIESVFKLRE-AQPNAIVDEMRKSLIDSY 185 (186)
Q Consensus 145 alV~p~tt~~Ei~~IedvL~V~~-~~~~~~~~~~~~~~~~~~ 185 (186)
..+|.+-|+.-++.|.+.||.+. +.-...++++|+.+.|++
T Consensus 250 ~p~Gi~~t~~~l~~ia~~~g~~~~~~~e~~i~~e~~~~~~~l 291 (421)
T cd01976 250 NFFGPTKIAESLRKIAAYFDDEITAKTEEVIAEYKPAMEAVI 291 (421)
T ss_pred ccCCHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHH
Confidence 14688899999999999999863 212234477777776653
No 40
>cd01977 Nitrogenase_VFe_alpha Nitrogenase_VFe_alpha -like: Nitrogenase VFe protein, alpha subunit like. This group contains proteins similar to the alpha subunits of, the VFe protein of the vanadium-dependent (V-) nitrogenase and the FeFe protein of the iron only (Fe-) nitrogenase Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V- and Fe- nitrogenases there is a molybdenum (Mo)-dependent nitrogenase which is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha sub
Probab=28.00 E-value=1.3e+02 Score=27.65 Aligned_cols=83 Identities=13% Similarity=0.123 Sum_probs=53.4
Q ss_pred HHHHHhhhCCeeEEEeeeCcceeeeEEEEcCCeEEe-CCCCCHHHHHHHhhhcCcceeEEEeecCccceeeEEEEcCceE
Q 029868 67 EEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLV-HPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTA 145 (186)
Q Consensus 67 ~~~I~d~LgVeVi~ttIags~lVGsl~vgNn~G~LV-~p~~~deElk~l~d~l~V~v~~gtvn~g~~~VGs~ivaNd~Ga 145 (186)
++.+=+.+|+++....-+|+++==....++..--++ .|.....-.+.|++-+|++.... .
T Consensus 180 i~~lL~~~Gl~v~~~~~~~~t~~ei~~~~~A~lnlv~~~~~~~~~A~~L~er~GiP~~~~---------------~---- 240 (415)
T cd01977 180 LQKYFERMGIQVLSTFTGNGTYDDLRWMHRAKLNVVNCARSAGYIANELKKRYGIPRLDV---------------D---- 240 (415)
T ss_pred HHHHHHHcCCeEEEEECCCCCHHHHHhcccCCEEEEEchhHHHHHHHHHHHHhCCCeEEe---------------c----
Confidence 444445689999855444444333333444455443 66655666788888788876321 1
Q ss_pred EEcCCCCHHHHHHHHHhhCCCCC
Q 029868 146 FCGSDTTATELSVIESVFKLREA 168 (186)
Q Consensus 146 lV~p~tt~~Ei~~IedvL~V~~~ 168 (186)
..|.+-|+.-++.|.+.||.+..
T Consensus 241 ~~G~~~t~~~l~~la~~~g~~~~ 263 (415)
T cd01977 241 GFGFEYCAESLRKIGAFFGIEDR 263 (415)
T ss_pred cCCHHHHHHHHHHHHHHhCcchh
Confidence 15788899999999999998753
No 41
>COG0089 RplW Ribosomal protein L23 [Translation, ribosomal structure and biogenesis]
Probab=27.51 E-value=88 Score=23.75 Aligned_cols=28 Identities=14% Similarity=0.243 Sum_probs=23.1
Q ss_pred cCCeEEeCCCCCHHHH-HHHhhhcCccee
Q 029868 96 SNRGGLVHPHTSIEDL-DELSTLLQVPLV 123 (186)
Q Consensus 96 Nn~G~LV~p~~~deEl-k~l~d~l~V~v~ 123 (186)
|..=+.|+|+++..|+ +.++++++|.|.
T Consensus 22 nk~vF~V~~~AtK~~IK~AvE~lF~VkV~ 50 (94)
T COG0089 22 NKYVFIVDPDATKPEIKAAVEELFGVKVE 50 (94)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCeEE
Confidence 4445899999999999 568889999984
No 42
>PF06776 IalB: Invasion associated locus B (IalB) protein; InterPro: IPR010642 This family consists of several invasion associated locus B (IalB) proteins and related sequences. IalB is known to be a major virulence factor in Bartonella bacilliformis where it was shown to have a direct role in human erythrocyte parasitism. IalB is up-regulated in response to environmental cues signalling vector-to-host transmission. Such environmental cues would include, but not be limited to, temperature, pH, oxidative stress, and haemin limitation. It is also thought that IalB would aide B. bacilliformis survival under stress-inducing environmental conditions []. The role of this protein in other bacterial species is unknown.; PDB: 3DTD_L.
Probab=27.41 E-value=1.7e+02 Score=22.29 Aligned_cols=63 Identities=11% Similarity=0.035 Sum_probs=39.5
Q ss_pred ecCcccccCCCCcEEEeccCCCceeeEEEeeCcEEEEecCCChhHHHHHHhhhCCeeEEEeeeC
Q 029868 22 VTKMGFSCHTQPQTKRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAG 85 (186)
Q Consensus 22 ~~~~~~~l~~~~~v~~~~~~~~aiGn~i~aND~~alVpp~l~~~~~~~I~d~LgVeVi~ttIag 85 (186)
.-..+..||.++.+.+=+.+ +.---|..|+..+|+..-.++++.++.++.-=...+.-.+..|
T Consensus 52 ~~Plg~~l~~gv~l~vD~~~-~~~~~~~~C~~~gC~a~~~l~~~~l~~~k~G~~~~v~~~~~~g 114 (134)
T PF06776_consen 52 RVPLGVLLPPGVRLQVDDGK-PIRLPFQTCLPNGCIAEAPLDDALLAAMKKGKQLTVSFTNARG 114 (134)
T ss_dssp EE-SSB-TTS-EEEEETTSS-EEEE---EEETTEEEEEEEE-HHHHHHHHH-SEEEEEEEBSST
T ss_pred EeccccccCCCeEEEECCCc-cceeeeEEECCCccEEEeecCHHHHHHHhCCCeEEEEEEecCC
Confidence 45566678887776654444 6668899999999999999999999999975433444444444
No 43
>COG3473 Maleate cis-trans isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=23.02 E-value=1.6e+02 Score=25.96 Aligned_cols=61 Identities=25% Similarity=0.230 Sum_probs=45.7
Q ss_pred ceEEEecCcccccCCCCcEEEec-----------cCCCceeeEEEeeCcEEEEecCCChhHHHHHHhhhCCeeEEEeee
Q 029868 17 GGFVLVTKMGFSCHTQPQTKRIE-----------ERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIA 84 (186)
Q Consensus 17 ~~~~~~~~~~~~l~~~~~v~~~~-----------~~~~aiGn~i~aND~~alVpp~l~~~~~~~I~d~LgVeVi~ttIa 84 (186)
+||=.+...++-+++.+++.+++ ....+=|.||.|++== .-+.++.+++.+|+||+..+-|
T Consensus 142 ~Gfeiv~~~~Lgi~dn~eigr~~P~~~y~lAk~~~~~~~DaiFiSCTnlR-------t~eii~~lE~~~G~PVvsSN~A 213 (238)
T COG3473 142 NGFEIVDFKGLGITDNLEIGRQEPWAVYRLAKEVFTPDADAIFISCTNLR-------TFEIIEKLERDTGVPVVSSNQA 213 (238)
T ss_pred CCeEEEEeeccCCcccchhcccChHHHHHHHHHhcCCCCCeEEEEeeccc-------cHHHHHHHHHHhCCceeeccHH
Confidence 56666788888899998887764 2345568899998732 3478999999999999876543
No 44
>PRK04165 acetyl-CoA decarbonylase/synthase complex subunit gamma; Provisional
Probab=21.78 E-value=4.6e+02 Score=25.03 Aligned_cols=111 Identities=11% Similarity=0.029 Sum_probs=63.0
Q ss_pred CCChhHHHHHHhhhCCeeEEEeeeCcceeeeEEEEcCC-------------e--EEeCCCCCHHHHHHHhh-hcCcceeE
Q 029868 61 DLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNR-------------G--GLVHPHTSIEDLDELST-LLQVPLVA 124 (186)
Q Consensus 61 ~l~~~~~~~I~d~LgVeVi~ttIags~lVGsl~vgNn~-------------G--~LV~p~~~deElk~l~d-~l~V~v~~ 124 (186)
-..++..+.+++.|..|+-+.+||.- -=++.+|... + +-+.+..++++++...+ +-++...+
T Consensus 44 ~~~~~~~~~l~~~~~ppi~~V~iG~G--~~~~~iGGEtvL~rhe~tf~np~~Ia~eI~D~l~~e~i~~r~~~~~~~~~~r 121 (450)
T PRK04165 44 YLSEEAKEKLEEASAPPIREVKIGTG--ERAVKIGGETVLYRHEKTFFNPTGIAVDVSDTMDDEEIDARLKKINNFQFER 121 (450)
T ss_pred CCCHHHHHHHHHHhCCCceeeeecCC--CeEEEECCcceeeecCcCCCCCCEEEEEEeCCCChHHHHHHHHHhhcchHhh
Confidence 34678999999999999999999842 1123344222 2 66788888888755544 43443321
Q ss_pred -EEeecCccceeeEEEEcCceEEEcCCCCHHHHHHHHHhhCCCCCCCchhHHHHHHH
Q 029868 125 -GTVNRGSEVIGAGLTVNDWTAFCGSDTTATELSVIESVFKLREAQPNAIVDEMRKS 180 (186)
Q Consensus 125 -gtvn~g~~~VGs~ivaNd~GalV~p~tt~~Ei~~IedvL~V~~~~~~~~~~~~~~~ 180 (186)
|. +.+-.+| .+-+..+ .|+.-.+-++.+.+..+++...+...-+..+++
T Consensus 122 vG~-~~~AD~I---aL~~~s~---dp~~v~~~Vk~V~~~~dvPLSIDT~dpevleaA 171 (450)
T PRK04165 122 VGE-ILKLDMV---ALRNASG---DPEKFAKAVKKVAETTDLPLILCSEDPAVLKAA 171 (450)
T ss_pred hcc-cccCCEE---EEeCCCC---CHHHHHHHHHHHHHhcCCCEEEeCCCHHHHHHH
Confidence 21 1223333 1222222 444445667777777788874444333444444
No 45
>PRK04323 hypothetical protein; Provisional
Probab=21.64 E-value=3.6e+02 Score=20.35 Aligned_cols=69 Identities=13% Similarity=0.120 Sum_probs=46.9
Q ss_pred eeeEEEeeCcEEEEecCCChhHHHHHHhhhC-CeeEEEeeeCcceeeeEEEEcCCeEEeCCCCCHHHHHHHhh
Q 029868 45 LGNCIACNDHVALAHTDLDRETEEIIADVLG-VEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELST 116 (186)
Q Consensus 45 iGn~i~aND~~alVpp~l~~~~~~~I~d~Lg-VeVi~ttIags~lVGsl~vgNn~G~LV~p~~~deElk~l~d 116 (186)
.||++.+++=+|+++|+ +....+.+++.=. =.++..|-+ +-.=|+.+.-++=.++||.-.+.=.+++..
T Consensus 10 fgn~V~~~rIIAIv~~~-Sap~Kr~~~~ak~~g~lidaT~G--rktrsvIItds~hV~LSai~~eTl~~R~~~ 79 (91)
T PRK04323 10 FGNIVSANRIIAIVSPE-SAPIKRIIQEARERGMLIDATYG--RKTRAVIITDSGHVILSAIQPETIAHRLSS 79 (91)
T ss_pred CCcEEEcccEEEEECCC-cHHHHHHHHHHHHcCeEEeccCC--CceeEEEEecCCeEEEeeCCHHHHHHHHhc
Confidence 37899999999999999 6666666665432 346666653 233455555444489998877766666653
No 46
>cd00316 Oxidoreductase_nitrogenase The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. This group contains both alpha and beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase) and, both subunits of Protochlorophyllide (Pchlide) reductase and chlorophyllide (chlide) reductase. The nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized nitrogenase is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers whose alpha and beta subunits are similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molec
Probab=21.17 E-value=2.6e+02 Score=24.73 Aligned_cols=99 Identities=15% Similarity=0.145 Sum_probs=56.2
Q ss_pred hHHHHHHhhhCCeeEEEeeeCcceeeeEEEEcCCe-EEeCCCCCHHHHHHHhhhcCcceeEEEeecCccceeeEEEEcCc
Q 029868 65 ETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRG-GLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDW 143 (186)
Q Consensus 65 ~~~~~I~d~LgVeVi~ttIags~lVGsl~vgNn~G-~LV~p~~~deElk~l~d~l~V~v~~gtvn~g~~~VGs~ivaNd~ 143 (186)
+.++.+=+.+|+++....=.|+++==.--.++..- ++++|.....-.+.+++-+|++.... +
T Consensus 169 ~el~~ll~~~G~~v~~~~~~~~s~~~i~~~~~A~~nlv~~~~~g~~~a~~l~~~~g~p~~~~---------------~-- 231 (399)
T cd00316 169 RELKRLLEEMGIRVNALFDGGTTVEELRELGNAKLNLVLCRESGLYLARYLEEKYGIPYILI---------------N-- 231 (399)
T ss_pred HHHHHHHHHcCCcEEEEcCCCCCHHHHHhhccCcEEEEecHhHHHHHHHHHHHHhCCCeEEe---------------C--
Confidence 44555556678887665444332200011111111 44555455555666666666665221 1
Q ss_pred eEEEcCCCCHHHHHHHHHhhCCCCCCCchhHHHHHHHhhh
Q 029868 144 TAFCGSDTTATELSVIESVFKLREAQPNAIVDEMRKSLID 183 (186)
Q Consensus 144 GalV~p~tt~~Ei~~IedvL~V~~~~~~~~~~~~~~~~~~ 183 (186)
.+|.+-|...++.|.+.||.+...+..+ +++|+.+.+
T Consensus 232 --p~G~~~t~~~l~~i~~~~g~~~~~~~~i-~~~~~~~~~ 268 (399)
T cd00316 232 --PIGLEATDAFLRKLAELFGIEKEVPEVI-ARERARLLD 268 (399)
T ss_pred --CcCHHHHHHHHHHHHHHhCCCcchHHHH-HHHHHHHHH
Confidence 5788899999999999999844444445 555555544
No 47
>cd01973 Nitrogenase_VFe_beta_like Nitrogenase_VFe_beta -like: Nitrogenase VFe protein, beta subunit like. This group contains proteins similar to the beta subunits of the VFe protein of the vanadium-dependent (V-) nitrogenase. Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V-nitrogenase there is a molybdenum (Mo)-dependent nitrogenase and an iron only (Fe-) nitrogenase. The Mo-nitrogenase is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe p
Probab=20.48 E-value=2.6e+02 Score=26.28 Aligned_cols=64 Identities=20% Similarity=0.185 Sum_probs=42.5
Q ss_pred EEeCCCCCHHHHHHHhhhcCcceeEEEeecCccceeeEEEEcCceEEEcCCCCHHHHHHHHHhhCCCCCCCchhHHHHHH
Q 029868 100 GLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATELSVIESVFKLREAQPNAIVDEMRK 179 (186)
Q Consensus 100 ~LV~p~~~deElk~l~d~l~V~v~~gtvn~g~~~VGs~ivaNd~GalV~p~tt~~Ei~~IedvL~V~~~~~~~~~~~~~~ 179 (186)
+++++.....-.+.+++-+|++..... ..+|.+-|+.-++.|.+.||.+. |..+. ++|+
T Consensus 231 iv~~~~~~~~~A~~Le~~fGiPyi~~~------------------~P~G~~~T~~~l~~ia~~~g~~~--~e~i~-~er~ 289 (454)
T cd01973 231 IALARYEGGKAAEFLQKKFDVPAILGP------------------TPIGIKNTDAFLQNIKELTGKPI--PESLV-RERG 289 (454)
T ss_pred EEEChhhhHHHHHHHHHHHCCCeeccC------------------CCcChHHHHHHHHHHHHHHCCCC--CHHHH-HHHH
Confidence 344565556666788888888863211 24677889999999999999874 44453 4454
Q ss_pred Hhhhh
Q 029868 180 SLIDS 184 (186)
Q Consensus 180 ~~~~~ 184 (186)
.++|.
T Consensus 290 ~~~~~ 294 (454)
T cd01973 290 IAIDA 294 (454)
T ss_pred HHHHH
Confidence 55554
Done!