Query 029868
Match_columns 186
No_of_seqs 105 out of 453
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 07:27:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029868.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029868hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a18_J EIF6, translation initi 100.0 2.7E-53 9.3E-58 364.3 12.5 173 12-185 66-247 (248)
2 1g62_A Ribosome anti-associati 100.0 2.1E-48 7.2E-53 329.9 13.1 153 12-165 63-224 (224)
3 4adx_I AIF6; ribosome, protein 100.0 1.8E-42 6.1E-47 293.3 18.8 161 7-167 48-221 (222)
4 1g61_A EIF-6, translation init 100.0 2.3E-40 7.7E-45 281.3 10.0 157 8-165 51-227 (228)
5 4adx_I AIF6; ribosome, protein 100.0 5.9E-32 2E-36 228.9 17.7 159 6-167 3-176 (222)
6 4a18_J EIF6, translation initi 100.0 4.4E-32 1.5E-36 232.8 11.3 128 40-167 11-140 (248)
7 1g62_A Ribosome anti-associati 100.0 7.8E-32 2.7E-36 228.4 10.2 128 40-167 8-137 (224)
8 1g61_A EIF-6, translation init 100.0 9.5E-30 3.2E-34 216.1 7.7 127 40-167 10-139 (228)
9 3j21_T 50S ribosomal protein L 60.0 22 0.00075 25.4 5.7 45 57-123 7-52 (86)
10 1vq8_S 50S ribosomal protein L 58.4 21 0.00073 25.3 5.4 45 57-123 6-51 (85)
11 3r8s_T 50S ribosomal protein L 50.0 28 0.00096 25.1 5.0 45 57-123 11-56 (93)
12 2zjr_Q 50S ribosomal protein L 46.3 19 0.00064 26.1 3.5 28 96-123 23-51 (95)
13 3u5e_X 60S ribosomal protein L 44.2 43 0.0015 26.1 5.5 45 57-123 63-108 (142)
14 2zkr_s 60S ribosomal protein L 44.1 43 0.0015 26.5 5.5 46 56-123 76-122 (156)
15 3i4a_A N(G),N(G)-dimethylargin 40.4 1.7E+02 0.0057 24.7 10.1 116 41-161 148-274 (308)
16 4a17_R RPL23A, 60S ribosomal p 36.7 63 0.0021 25.4 5.4 45 57-123 71-116 (150)
17 3tve_T 50S ribosomal protein L 32.0 42 0.0014 24.1 3.5 28 96-123 22-50 (92)
18 3dtd_A Invasion-associated pro 31.9 59 0.002 25.5 4.6 62 20-81 75-136 (175)
19 3iz5_X 60S ribosomal protein L 30.9 68 0.0023 25.2 4.8 46 56-123 72-118 (152)
20 1jdw_A L-arginine\:glycine ami 30.3 2.1E+02 0.007 25.4 8.4 105 60-167 271-390 (423)
21 2pju_A Propionate catabolism o 30.1 16 0.00053 30.0 0.9 68 56-127 66-137 (225)
22 2q5c_A NTRC family transcripti 28.0 9.5 0.00033 30.3 -0.7 69 56-128 54-126 (196)
23 2nrr_A Uvrabc system protein C 23.3 81 0.0028 24.9 4.0 34 66-99 3-44 (159)
24 2nrt_A Uvrabc system protein C 20.0 1.6E+02 0.0055 24.2 5.3 36 64-99 6-49 (220)
No 1
>4a18_J EIF6, translation initiation factor EIF-6, putative FAM protein; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_J 4a1b_J 4a1d_J
Probab=100.00 E-value=2.7e-53 Score=364.28 Aligned_cols=173 Identities=60% Similarity=0.982 Sum_probs=148.2
Q ss_pred hccCcceEEEecCccc---------ccCCCCcEEEeccCCCceeeEEEeeCcEEEEecCCChhHHHHHHhhhCCeeEEEe
Q 029868 12 ATGLSGGFVLVTKMGF---------SCHTQPQTKRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQT 82 (186)
Q Consensus 12 ~~~~~~~~~~~~~~~~---------~l~~~~~v~~~~~~~~aiGn~i~aND~~alVpp~l~~~~~~~I~d~LgVeVi~tt 82 (186)
.+||++|++ +++... +||++++|.++++|+||+|||++|||++|+|||++++++.+.|+|+|||||++++
T Consensus 66 ~~GN~nGll-vp~~~~d~El~~l~~~l~~~v~v~~~~~r~~alGn~i~aND~~ALV~pdl~~e~~e~I~d~LgVeV~~~t 144 (248)
T 4a18_J 66 TCGNKNGLL-VPNTCNDNELRNIRNSLPDNVRVRRIEEKLSALGNCVVANDYVALIHPDLDRESEEIIADTLGVEVFRTT 144 (248)
T ss_dssp CEEETTEEE-ECTTCCHHHHHHHHHHSCTTSEEEECCCSSCCHHHHEEECSSEEEECSSCCHHHHHHHHHHHTCEEEECC
T ss_pred EEecCCeEE-eCCcCCHHHHHHHHhhCCCCceEEEeCCccccceEEEEEcCcEEEECCCCCHHHHHHHHHhcCCcEEEEE
Confidence 467778877 666554 7889999999999999999999999999999999999999999999999999999
Q ss_pred eeCcceeeeEEEEcCCeEEeCCCCCHHHHHHHhhhcCcceeEEEeecCccceeeEEEEcCceEEEcCCCCHHHHHHHHHh
Q 029868 83 IAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATELSVIESV 162 (186)
Q Consensus 83 Iags~lVGsl~vgNn~G~LV~p~~~deElk~l~d~l~V~v~~gtvn~g~~~VGs~ivaNd~GalV~p~tt~~Ei~~Iedv 162 (186)
|||+++||+++++||+|+||||.++++|+++|+++|+|++.+||+|+|.++||+|++|||+||+|||+||++|+++|+++
T Consensus 145 Iags~lVGs~~v~Nn~G~LVhp~~s~eEl~~L~~~l~V~v~~gTvN~G~~~VGsgivaNd~GalVg~~tT~~El~~Ie~~ 224 (248)
T 4a18_J 145 IANNVLVGTYCVINNRGGLVHPLASVEELDELANLLQIPLCAGTINRGSDVIGAGLVVNDWAAFCGLDTTSTEISVVENI 224 (248)
T ss_dssp BTTBSCHHHHEEECSSCEEECTTCCHHHHHHHHHHHTSCEEECCBTTTBSCHHHHEEEETTEEEEETTCCHHHHHHHHHH
T ss_pred cCCcceeEEEEEEeCCeEEECCCCCHHHHHHHHHHhCCceEEEeecCCCccceEEEEEeCCeEEECCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCCCCchhHHHHHHHhhhhc
Q 029868 163 FKLREAQPNAIVDEMRKSLIDSY 185 (186)
Q Consensus 163 L~V~~~~~~~~~~~~~~~~~~~~ 185 (186)
||+.+++|..+.++||+++||++
T Consensus 225 l~v~~~~~~~~~~~~~~~~~~~~ 247 (248)
T 4a18_J 225 FKLNEMKDENMDNEMRKDFVMNL 247 (248)
T ss_dssp TTCC-------------------
T ss_pred hCCCCCCchHHHHHHHHHHHhhc
Confidence 99999999999899999999986
No 2
>1g62_A Ribosome anti-association factor EIF6; alpha-beta barrel, velcro closure, subdomain, structural genomics, PSI; 2.50A {Saccharomyces cerevisiae} SCOP: d.126.1.1 PDB: 2x7n_B
Probab=100.00 E-value=2.1e-48 Score=329.94 Aligned_cols=153 Identities=67% Similarity=1.017 Sum_probs=147.1
Q ss_pred hccCcceEEEecCccc---------ccCCCCcEEEeccCCCceeeEEEeeCcEEEEecCCChhHHHHHHhhhCCeeEEEe
Q 029868 12 ATGLSGGFVLVTKMGF---------SCHTQPQTKRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQT 82 (186)
Q Consensus 12 ~~~~~~~~~~~~~~~~---------~l~~~~~v~~~~~~~~aiGn~i~aND~~alVpp~l~~~~~~~I~d~LgVeVi~tt 82 (186)
.+||++|++ +++... +||++++|.++++|++++|||++|||++|+|||++++++.+.|+|+|||||++++
T Consensus 63 ~~gN~nGll-vp~~~~d~El~~l~~~l~~~v~V~~~~~~~~aiGn~i~~ND~~alV~p~l~~e~~~~i~d~L~VeV~~~t 141 (224)
T 1g62_A 63 TAGNRRGLL-VPTQTTDQELQHLRNSLPDSVKIQRVEERLSALGNVICCNDYVALVHPDIDRETEELISDVLGVEVFRQT 141 (224)
T ss_dssp CEECSSEEE-EETTCCHHHHHHHHHHSCTTSEEEEECCCSSCHHHHEEECSSEEEECTTCCHHHHHHHHHHHTSEEEECC
T ss_pred EEecCceEE-cCCcCCHHHHHHHHhhCCCCceEEEECCcCcceeEEEEEcCcEEEECCCCCHHHHHHHHHhhCCcEEEEE
Confidence 568888888 666554 7899999999999999999999999999999999999999999999999999999
Q ss_pred eeCcceeeeEEEEcCCeEEeCCCCCHHHHHHHhhhcCcceeEEEeecCccceeeEEEEcCceEEEcCCCCHHHHHHHHHh
Q 029868 83 IAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATELSVIESV 162 (186)
Q Consensus 83 Iags~lVGsl~vgNn~G~LV~p~~~deElk~l~d~l~V~v~~gtvn~g~~~VGs~ivaNd~GalV~p~tt~~Ei~~Iedv 162 (186)
|||+++||+++++||+|+||||+++++|+++|+++|+|++.+||+|+|.++||++++|||||++|||+||++|+++|+++
T Consensus 142 Iag~~lVGs~~v~nn~G~LVhP~~s~ee~~~i~d~L~V~v~~gTvN~G~~~VGs~~vann~G~lvg~~TT~~El~~Ie~~ 221 (224)
T 1g62_A 142 ISGNILVGSYCSLSNQGGLVHPQTSVQDQEELSSLLQVPLVAGTVNRGSSVVGAGMVVNDYLAVTGLDTTAPELSVIESI 221 (224)
T ss_dssp BTTBSCGGGSEEECSSCEEECTTCCHHHHHHHHHHHTSCEEECCBTTTBSCHHHHEEECSSCEEEETTCCHHHHHHHHHH
T ss_pred ecCcceEEEEEEEeCcEEEECCCCCHHHHHHHHHHhCCcEEEEEEcCCCCceeEEEEEECCEEEECCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCC
Q 029868 163 FKL 165 (186)
Q Consensus 163 L~V 165 (186)
|++
T Consensus 222 f~v 224 (224)
T 1g62_A 222 FRL 224 (224)
T ss_dssp TTC
T ss_pred hCc
Confidence 986
No 3
>4adx_I AIF6; ribosome, protein synthesis; 6.60A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=100.00 E-value=1.8e-42 Score=293.25 Aligned_cols=161 Identities=35% Similarity=0.494 Sum_probs=154.0
Q ss_pred hhhhhhccCcceEEEecCcccccCCC-------------CcEEEeccCCCceeeEEEeeCcEEEEecCCChhHHHHHHhh
Q 029868 7 KHQLVATGLSGGFVLVTKMGFSCHTQ-------------PQTKRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADV 73 (186)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~l~~~-------------~~v~~~~~~~~aiGn~i~aND~~alVpp~l~~~~~~~I~d~ 73 (186)
+-.|.-|+++|.|.++|+.+..+|.. ++|.++++|++++||+++|||++|+|||+++++.++.|+|+
T Consensus 48 ~~si~Gs~~IG~~~~~N~~gllvp~~~~d~e~~~l~~~~v~V~~~~~~~~alGnli~~Nd~galV~~~~~~ee~e~I~d~ 127 (222)
T 4adx_I 48 KVSISGSSLNGALAVGNSNGFVVSNQAMDREIDALAAAGVEAVRIPERFTAVGNLVLANDNGAVASPLLSDDALQVIGDV 127 (222)
T ss_pred EEEecCCcceeEEEEecCCEEEECCCCCHHHHHHHHhcCCeEEEECCCcceeEEEEEEcCceEEECCcCCHHHHHHHHHh
Confidence 44577899999999999999988876 56888999999999999999999999999999999999999
Q ss_pred hCCeeEEEeeeCcceeeeEEEEcCCeEEeCCCCCHHHHHHHhhhcCcceeEEEeecCccceeeEEEEcCceEEEcCCCCH
Q 029868 74 LGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTA 153 (186)
Q Consensus 74 LgVeVi~ttIags~lVGsl~vgNn~G~LV~p~~~deElk~l~d~l~V~v~~gtvn~g~~~VGs~ivaNd~GalV~p~tt~ 153 (186)
|||+|.+.++++.+++|+++++||+|+||||+++++|+|+|+++|+|++.+||+|+|.++||++++|||||++|||+||+
T Consensus 128 L~VeV~~~~i~~~~avGn~~v~nn~G~lVhP~~s~ee~~~i~~~L~V~v~~GTvn~G~~~VGsg~VaN~~G~lvg~~TT~ 207 (222)
T 4adx_I 128 LEVDVKVSTLAGLNIVGSMGAATNRGALLNPQASSEEIGIIEDTLGVEADVGTVNHGVTLIGACSVANSNGVLVGEETTG 207 (222)
T ss_pred hCccEEEEecCCccceEEEEEEeCceEEECCCCCHHHHHHHHHHhCCCEEEeeecCCCCceeEEEEEeCCEEEECCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCCC
Q 029868 154 TELSVIESVFKLRE 167 (186)
Q Consensus 154 ~Ei~~IedvL~V~~ 167 (186)
+|+++|+++||+.+
T Consensus 208 ~El~~ie~~f~~~~ 221 (222)
T 4adx_I 208 PELARIEEALGFLE 221 (222)
T ss_pred HHHHHHHHHhcccc
Confidence 99999999999753
No 4
>1g61_A EIF-6, translation initiation factor 6; alpha-beta-barrel velcro closure subdomain, structural genomics, PSI; 1.30A {Methanocaldococcus jannaschii} SCOP: d.126.1.1
Probab=100.00 E-value=2.3e-40 Score=281.34 Aligned_cols=157 Identities=34% Similarity=0.461 Sum_probs=144.3
Q ss_pred hhhhhccCcceEEEecCccccc-------------------CCCCcEEEeccCCCceeeEEEeeCcEEEEecCCChhHHH
Q 029868 8 HQLVATGLSGGFVLVTKMGFSC-------------------HTQPQTKRIEERLSALGNCIACNDHVALAHTDLDRETEE 68 (186)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~l-------------------~~~~~v~~~~~~~~aiGn~i~aND~~alVpp~l~~~~~~ 68 (186)
-+|.-|+++|.|.++|+.+.++ |++++|.++++|++++||+++|||++|+|||++ ++..+
T Consensus 51 ~si~gs~~IGv~~~gN~~gllvp~~~~d~e~~~i~~~L~~~~~~v~V~~v~~~~~alGnli~~Nd~galV~~el-~~~~~ 129 (228)
T 1g61_A 51 TNIGGSSLVGSLSVANKYGLLLPKIVEDEELDRIKNFLKENNLDLNVEIIKSKNTALGNLILTNDKGALISPEL-KDFKK 129 (228)
T ss_dssp CCBTTBSCHHHHCEECSSEEEEETTCCHHHHHHHHHHHHHTTCCCEEEEECCSSCCHHHHEEECSSEEEECGGG-GGGHH
T ss_pred EEecCCccEEEEEEecCCEEEECCCCCHHHHHHHHHHhhccCCCceEEEEcCCCcceEEEEEecCccEEeCHHH-HHHHH
Confidence 3455566666666666655533 566779999999999999999999999999999 99999
Q ss_pred HHHhhhCCeeEEEeeeCcceeeeEEEEcCCeEEeCCCCCHHHHHHHhhhcCcc-eeEEEeecCccceeeEEEEcCceEEE
Q 029868 69 IIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVP-LVAGTVNRGSEVIGAGLTVNDWTAFC 147 (186)
Q Consensus 69 ~I~d~LgVeVi~ttIags~lVGsl~vgNn~G~LV~p~~~deElk~l~d~l~V~-v~~gtvn~g~~~VGs~ivaNd~GalV 147 (186)
.|+|+|+|++.+.+|++..++|+.++.+|+|+||||+++++|+|+|+++|+|+ +.+||+|+|.++|||+++|||||++|
T Consensus 130 ~i~d~L~veV~~~~i~~~~tvg~n~v~tN~G~LVhP~~s~ee~~~i~d~L~V~~v~~GTvn~G~~~VGsg~VaNn~G~lv 209 (228)
T 1g61_A 130 DIEDSLNVEVEIGTIAELPTVGSNAVVTNKGCLTHPLVEDDELEFLKSLFKVEYIGKGTANKGTTSVGACIIANSKGAVV 209 (228)
T ss_dssp HHHHHHCSEEEECCBTTBSCTTTSEEECSSEEEECTTCCHHHHHHHHHHHTCSEEEECCBTTTBSCGGGTEEECSSCEEE
T ss_pred HHHHhcCCceEEEEeCCccceeeEEEEecceEEECCCCCHHHHHHHHHhcCCCeEeeeeeeCCCCceeEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999999999999 99999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHhhCC
Q 029868 148 GSDTTATELSVIESVFKL 165 (186)
Q Consensus 148 ~p~tt~~Ei~~IedvL~V 165 (186)
||+||++|+++|+++||+
T Consensus 210 g~~TT~~El~~Ie~~f~v 227 (228)
T 1g61_A 210 GGDTTGPELLIIEDALGL 227 (228)
T ss_dssp ETTCCHHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHhcc
Confidence 999999999999999997
No 5
>4adx_I AIF6; ribosome, protein synthesis; 6.60A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=100.00 E-value=5.9e-32 Score=228.86 Aligned_cols=159 Identities=17% Similarity=0.210 Sum_probs=147.5
Q ss_pred hhhhhhhccCcceEEEecCcccccCCC------------CcEEEec---cCCCceeeEEEeeCcEEEEecCCChhHHHHH
Q 029868 6 LKHQLVATGLSGGFVLVTKMGFSCHTQ------------PQTKRIE---ERLSALGNCIACNDHVALAHTDLDRETEEII 70 (186)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~l~~~------------~~v~~~~---~~~~aiGn~i~aND~~alVpp~l~~~~~~~I 70 (186)
.|-|+.-+.++|.|...++--.++|.+ +.+.+++ .+.+.+|.|+++||+++++||..+++..+.|
T Consensus 3 ~r~~~~gs~~iGvf~~~t~~~~lv~~~~~~~~~~~~~~~L~v~ii~~si~Gs~~IG~~~~~N~~gllvp~~~~d~e~~~l 82 (222)
T 4adx_I 3 RRINLSGNPNLGVYISVTDSVALIPQNTPEKFEGVLREALEVEVLKVSISGSSLNGALAVGNSNGFVVSNQAMDREIDAL 82 (222)
T ss_pred EEEEecCCCcEEEEEEEeCCEEEEcCCCCHHHHHHHHHHhCCcEEEEEecCCcceeEEEEecCCEEEECCCCCHHHHHHH
Confidence 467888999999999888888877776 3343333 6899999999999999999999999999999
Q ss_pred HhhhCCeeEEEeeeCcceeeeEEEEcCCeEEeCCCCCHHHHHHHhhhcCcceeEEEeecCccceeeEEEEcCceEEEcCC
Q 029868 71 ADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSD 150 (186)
Q Consensus 71 ~d~LgVeVi~ttIags~lVGsl~vgNn~G~LV~p~~~deElk~l~d~l~V~v~~gtvn~g~~~VGs~ivaNd~GalV~p~ 150 (186)
++ ++|++.+++ ++++.+|.++++||+|+||||+++++|++.|+|+|+|++.++++ ++.+++||.++|||+||+|||+
T Consensus 83 ~~-~~v~V~~~~-~~~~alGnli~~Nd~galV~~~~~~ee~e~I~d~L~VeV~~~~i-~~~~avGn~~v~nn~G~lVhP~ 159 (222)
T 4adx_I 83 AA-AGVEAVRIP-ERFTAVGNLVLANDNGAVASPLLSDDALQVIGDVLEVDVKVSTL-AGLNIVGSMGAATNRGALLNPQ 159 (222)
T ss_pred Hh-cCCeEEEEC-CCcceeEEEEEEcCceEEECCcCCHHHHHHHHHhhCccEEEEec-CCccceEEEEEEeCceEEECCC
Confidence 99 599999999 99999999999999999999999999999999999999999998 8899999999999999999999
Q ss_pred CCHHHHHHHHHhhCCCC
Q 029868 151 TTATELSVIESVFKLRE 167 (186)
Q Consensus 151 tt~~Ei~~IedvL~V~~ 167 (186)
+|++|++.|+++|+||.
T Consensus 160 ~s~ee~~~i~~~L~V~v 176 (222)
T 4adx_I 160 ASSEEIGIIEDTLGVEA 176 (222)
T ss_pred CCHHHHHHHHHHhCCCE
Confidence 99999999999999997
No 6
>4a18_J EIF6, translation initiation factor EIF-6, putative FAM protein; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_J 4a1b_J 4a1d_J
Probab=99.97 E-value=4.4e-32 Score=232.84 Aligned_cols=128 Identities=16% Similarity=0.213 Sum_probs=124.4
Q ss_pred cCCCceeeEEEeeCcEEEEecCCChhHHHHHHhhhC--CeeEEEeeeCcceeeeEEEEcCCeEEeCCCCCHHHHHHHhhh
Q 029868 40 ERLSALGNCIACNDHVALAHTDLDRETEEIIADVLG--VEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTL 117 (186)
Q Consensus 40 ~~~~aiGn~i~aND~~alVpp~l~~~~~~~I~d~Lg--VeVi~ttIags~lVGsl~vgNn~G~LV~p~~~deElk~l~d~ 117 (186)
++.++||+|+++||+||++||+.++++.+.++++|+ +|+++|+|+||++||+|++||+||+|||+.++|+|++.|++.
T Consensus 11 ~gs~~IGvf~~~t~~~~lv~~~~~~~~~~~~~~~L~~~v~vv~tsI~gs~lvG~l~~GN~nGllvp~~~~d~El~~l~~~ 90 (248)
T 4a18_J 11 ENSNDIGVFCKLTSAYCLVSVGASENFYSVFESELVPHIPVIHTSIGGTRIVGRVTCGNKNGLLVPNTCNDNELRNIRNS 90 (248)
T ss_dssp TTBSCGGGTEEEETTEEEEETTCCHHHHHHHHHHHTTTSCEEEECSSSCSCHHHHCEEETTEEEECTTCCHHHHHHHHHH
T ss_pred cCCCcEEEEEEEeCCEEEEcCCCCHHHHHHHHHHhcCCccEEEEEecCcceEEEEEEecCCeEEeCCcCCHHHHHHHHhh
Confidence 688999999999999999999999999999999999 999999999999999999999999999999999999999999
Q ss_pred cCcceeEEEeecCccceeeEEEEcCceEEEcCCCCHHHHHHHHHhhCCCC
Q 029868 118 LQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATELSVIESVFKLRE 167 (186)
Q Consensus 118 l~V~v~~gtvn~g~~~VGs~ivaNd~GalV~p~tt~~Ei~~IedvL~V~~ 167 (186)
|+-.+...++..+.+++|+.++|||++|+|||+++++..+.|+|+|||++
T Consensus 91 l~~~v~v~~~~~r~~alGn~i~aND~~ALV~pdl~~e~~e~I~d~LgVeV 140 (248)
T 4a18_J 91 LPDNVRVRRIEEKLSALGNCVVANDYVALIHPDLDRESEEIIADTLGVEV 140 (248)
T ss_dssp SCTTSEEEECCCSSCCHHHHEEECSSEEEECSSCCHHHHHHHHHHHTCEE
T ss_pred CCCCceEEEeCCccccceEEEEEcCcEEEECCCCCHHHHHHHHHhcCCcE
Confidence 87666679999999999999999999999999999999999999999997
No 7
>1g62_A Ribosome anti-association factor EIF6; alpha-beta barrel, velcro closure, subdomain, structural genomics, PSI; 2.50A {Saccharomyces cerevisiae} SCOP: d.126.1.1 PDB: 2x7n_B
Probab=99.97 E-value=7.8e-32 Score=228.43 Aligned_cols=128 Identities=20% Similarity=0.274 Sum_probs=124.8
Q ss_pred cCCCceeeEEEeeCcEEEEecCCChhHHHHHHhhhC--CeeEEEeeeCcceeeeEEEEcCCeEEeCCCCCHHHHHHHhhh
Q 029868 40 ERLSALGNCIACNDHVALAHTDLDRETEEIIADVLG--VEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTL 117 (186)
Q Consensus 40 ~~~~aiGn~i~aND~~alVpp~l~~~~~~~I~d~Lg--VeVi~ttIags~lVGsl~vgNn~G~LV~p~~~deElk~l~d~ 117 (186)
++.++||+|+++||+||++||+.++++.+.++++|+ +|+++|+|+||+++|+|++||+||+|||+.++|+|++.|++.
T Consensus 8 ~gs~~IGvf~~~t~~~~lv~~~~~~~~~~~~~~~L~~~v~vv~tsI~gs~lvG~l~~gN~nGllvp~~~~d~El~~l~~~ 87 (224)
T 1g62_A 8 ENSNEIGVFSKLTNTYCLVAVGGSENFYSAFEAELGDAIPIVHTTIAGTRIIGRMTAGNRRGLLVPTQTTDQELQHLRNS 87 (224)
T ss_dssp TTBCCHHHHEEECSSCEEEETTCCHHHHHHHHHHHTTTSCEEEECBTTBSCHHHHCEECSSEEEEETTCCHHHHHHHHHH
T ss_pred cCCCcEEEEEEEeCCEEEEcCCCCHHHHHHHHHHhccCccEEEEEecCcceEEEEEEecCceEEcCCcCCHHHHHHHHhh
Confidence 688999999999999999999999999999999999 999999999999999999999999999999999999999999
Q ss_pred cCcceeEEEeecCccceeeEEEEcCceEEEcCCCCHHHHHHHHHhhCCCC
Q 029868 118 LQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATELSVIESVFKLRE 167 (186)
Q Consensus 118 l~V~v~~gtvn~g~~~VGs~ivaNd~GalV~p~tt~~Ei~~IedvL~V~~ 167 (186)
|+..+...+++.+.+++|+.++|||++|+|||+++++..+.|+|+|||++
T Consensus 88 l~~~v~V~~~~~~~~aiGn~i~~ND~~alV~p~l~~e~~~~i~d~L~VeV 137 (224)
T 1g62_A 88 LPDSVKIQRVEERLSALGNVICCNDYVALVHPDIDRETEELISDVLGVEV 137 (224)
T ss_dssp SCTTSEEEEECCCSSCHHHHEEECSSEEEECTTCCHHHHHHHHHHHTSEE
T ss_pred CCCCceEEEECCcCcceeEEEEEcCcEEEECCCCCHHHHHHHHHhhCCcE
Confidence 87777779999999999999999999999999999999999999999997
No 8
>1g61_A EIF-6, translation initiation factor 6; alpha-beta-barrel velcro closure subdomain, structural genomics, PSI; 1.30A {Methanocaldococcus jannaschii} SCOP: d.126.1.1
Probab=99.96 E-value=9.5e-30 Score=216.11 Aligned_cols=127 Identities=20% Similarity=0.292 Sum_probs=119.5
Q ss_pred cCCCceeeEEEeeCcEEEEecCCChhHHHHHHhhhCCeeEEEeeeCcceeeeEEEEcCCeEEeCCCCCHHHHHHHhhhcC
Q 029868 40 ERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQ 119 (186)
Q Consensus 40 ~~~~aiGn~i~aND~~alVpp~l~~~~~~~I~d~LgVeVi~ttIags~lVGsl~vgNn~G~LV~p~~~deElk~l~d~l~ 119 (186)
++.++||+|+++||+||++||+.++++.+.++++|++|+++++|+|++++|+|+++|++|+||||.++|+|++.|++.|+
T Consensus 10 ~gs~~iGvf~~~t~~~~lv~~~~~~~~~~~~~~~L~v~vv~~si~gs~~IGv~~~gN~~gllvp~~~~d~e~~~i~~~L~ 89 (228)
T 1g61_A 10 SGIPTIGVLALTTEEITLLPIFLDKDDVNEVSEVLETKCLQTNIGGSSLVGSLSVANKYGLLLPKIVEDEELDRIKNFLK 89 (228)
T ss_dssp TTBCCHHHHCEECSSEEEECTTCCHHHHHHHHHHHTCEEEECCBTTBSCHHHHCEECSSEEEEETTCCHHHHHHHHHHHH
T ss_pred cCCCcEEEEEEEeCCEEEEcCCCCHHHHHHHHHHhCCcEEEEEecCCccEEEEEEecCCEEEECCCCCHHHHHHHHHHhh
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999984
Q ss_pred ---cceeEEEeecCccceeeEEEEcCceEEEcCCCCHHHHHHHHHhhCCCC
Q 029868 120 ---VPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATELSVIESVFKLRE 167 (186)
Q Consensus 120 ---V~v~~gtvn~g~~~VGs~ivaNd~GalV~p~tt~~Ei~~IedvL~V~~ 167 (186)
..+....+..+.+++|+.+++||+|++|||++ ++..+.|+|+|++++
T Consensus 90 ~~~~~v~V~~v~~~~~alGnli~~Nd~galV~~el-~~~~~~i~d~L~veV 139 (228)
T 1g61_A 90 ENNLDLNVEIIKSKNTALGNLILTNDKGALISPEL-KDFKKDIEDSLNVEV 139 (228)
T ss_dssp HTTCCCEEEEECCSSCCHHHHEEECSSEEEECGGG-GGGHHHHHHHHCSEE
T ss_pred ccCCCceEEEEcCCCcceEEEEEecCccEEeCHHH-HHHHHHHHHhcCCce
Confidence 33444667889999999999999999999999 888899999999985
No 9
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=60.03 E-value=22 Score=25.36 Aligned_cols=45 Identities=9% Similarity=0.194 Sum_probs=36.1
Q ss_pred EEecCCChhHHHHHHhhhCCeeEEEeeeCcceeeeEEEEcCCeEEeCCCCCHHHHH-HHhhhcCccee
Q 029868 57 LAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLD-ELSTLLQVPLV 123 (186)
Q Consensus 57 lVpp~l~~~~~~~I~d~LgVeVi~ttIags~lVGsl~vgNn~G~LV~p~~~deElk-~l~d~l~V~v~ 123 (186)
+..|-++++..+.+++. |-.-+.|+|.++..|++ .++++++|+|.
T Consensus 7 Ik~P~iTEKa~~~~e~~----------------------n~~~F~Vd~~AnK~qIK~AVe~lf~VkV~ 52 (86)
T 3j21_T 7 IIRPVVTEKAISLIEKE----------------------NKLTFIVDRRATKQDIKRAVEEIFNVKVE 52 (86)
T ss_dssp EEECCCSHHHHHHHHTS----------------------CEEEEEECTTCCHHHHHHHHHHHTTCCEE
T ss_pred hhccccCHHHHHHHHhC----------------------CEEEEEEcCCCCHHHHHHHHHHHcCCCce
Confidence 56788888888877754 55669999999999995 67788999983
No 10
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=58.39 E-value=21 Score=25.35 Aligned_cols=45 Identities=9% Similarity=0.067 Sum_probs=34.5
Q ss_pred EEecCCChhHHHHHHhhhCCeeEEEeeeCcceeeeEEEEcCCeEEeCCCCCHHHHH-HHhhhcCccee
Q 029868 57 LAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLD-ELSTLLQVPLV 123 (186)
Q Consensus 57 lVpp~l~~~~~~~I~d~LgVeVi~ttIags~lVGsl~vgNn~G~LV~p~~~deElk-~l~d~l~V~v~ 123 (186)
+..|-++++..+.+++. |-.-+.|+|.++..|++ .++++++|+|.
T Consensus 6 Ik~P~iTEKa~~~~e~~----------------------n~~~F~V~~~AnK~qIK~ave~lf~VkV~ 51 (85)
T 1vq8_S 6 IKHPHVTEKAMNDMDFQ----------------------NKLQFAVDDRASKGEVADAVEEQYDVTVE 51 (85)
T ss_dssp EEEECCSHHHHHHHHHS----------------------CEEEEEECTTCCHHHHHHHHHHHHCCCEE
T ss_pred eeccccCHHHHHHHHhC----------------------CEEEEEECCCCCHHHHHHHHHHHhCCCce
Confidence 45677778777777632 34669999999999995 57778999983
No 11
>3r8s_T 50S ribosomal protein L23; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_T 3j19_T 2wwq_T 3oat_T* 3oas_T* 3ofd_T 3ofc_T 3ofr_T* 3ofz_T* 3og0_T 3ofq_T 3r8t_T 2j28_T 3e1b_M 3e1d_M 3iy9_T 3i1n_T 1p85_R 1p86_R 1vs8_T ...
Probab=49.98 E-value=28 Score=25.07 Aligned_cols=45 Identities=9% Similarity=0.144 Sum_probs=34.1
Q ss_pred EEecCCChhHHHHHHhhhCCeeEEEeeeCcceeeeEEEEcCCeEEeCCCCCHHHHH-HHhhhcCccee
Q 029868 57 LAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLD-ELSTLLQVPLV 123 (186)
Q Consensus 57 lVpp~l~~~~~~~I~d~LgVeVi~ttIags~lVGsl~vgNn~G~LV~p~~~deElk-~l~d~l~V~v~ 123 (186)
|..|-++++....+++. |-.-+.|+|.++..|++ .++++++|+|.
T Consensus 11 Ik~P~iTEKa~~~~e~~----------------------n~~~F~V~~~AnK~eIK~AVE~lf~VkV~ 56 (93)
T 3r8s_T 11 LRAPHVSEKASTAMEKS----------------------NTIVLKVAKDATKAEIKAAVQKLFEVEVE 56 (93)
T ss_dssp EEEECCSHHHHHHHHTT----------------------SEEEEEECSSCCHHHHHHHHHHHSCCCCC
T ss_pred hhccccCHHHHHHHHhC----------------------CEEEEEECCCCCHHHHHHHHHHHcCCceE
Confidence 45666777776666652 55569999999999995 67888999984
No 12
>2zjr_Q 50S ribosomal protein L23; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.12.1.1 PDB: 1sm1_R* 2aar_R 2d3o_R 2zjp_Q* 2zjq_Q 1nkw_R 3cf5_Q* 3dll_Q* 3pio_Q* 3pip_Q* 1nwy_R* 1nwx_R* 1xbp_R* 1pnu_R 1pny_R 1vor_U 1vou_U 1vow_U 1voy_U 1vp0_U
Probab=46.30 E-value=19 Score=26.13 Aligned_cols=28 Identities=11% Similarity=0.221 Sum_probs=23.8
Q ss_pred cCCeEEeCCCCCHHHHH-HHhhhcCccee
Q 029868 96 SNRGGLVHPHTSIEDLD-ELSTLLQVPLV 123 (186)
Q Consensus 96 Nn~G~LV~p~~~deElk-~l~d~l~V~v~ 123 (186)
|+.-+.|+|.++..|++ .++++++|+|.
T Consensus 23 n~y~F~V~~~anK~eIK~aVE~lf~VkV~ 51 (95)
T 2zjr_Q 23 GVYSFWVSPKATKTEIKDAIQQAFGVRVI 51 (95)
T ss_dssp TCCEEEECSSCTHHHHHHHHHHHHCCCCS
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCCce
Confidence 56789999999999995 67778999983
No 13
>3u5e_X 60S ribosomal protein L25; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_K 2ww9_K 3izc_X 3izs_X 2wwb_K 3o5h_W 3o58_W 3u5i_X 4b6a_X 1s1i_T 3jyw_T
Probab=44.19 E-value=43 Score=26.09 Aligned_cols=45 Identities=9% Similarity=0.031 Sum_probs=37.4
Q ss_pred EEecCCChhHHHHHHhhhCCeeEEEeeeCcceeeeEEEEcCCeEEeCCCCCHHHHH-HHhhhcCccee
Q 029868 57 LAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLD-ELSTLLQVPLV 123 (186)
Q Consensus 57 lVpp~l~~~~~~~I~d~LgVeVi~ttIags~lVGsl~vgNn~G~LV~p~~~deElk-~l~d~l~V~v~ 123 (186)
|..|-++++..+.+++. |-.-+.|++.++..|++ .++++++|+|.
T Consensus 63 Ik~PliTEKa~~~~E~~----------------------N~~vF~Vd~~AnK~qIK~AVEklf~VkV~ 108 (142)
T 3u5e_X 63 IEQPITSETAMKKVEDG----------------------NILVFQVSMKANKYQIKKAVKELYEVDVL 108 (142)
T ss_dssp EEEECCCHHHHHHHHHH----------------------CEEEEEECTTCCHHHHHHHHHHHHSCCEE
T ss_pred hhcCCcCHHHHHHHHhC----------------------CEEEEEEcCCCCHHHHHHHHHHHhCCcee
Confidence 66788999999988874 45569999999999995 67888999983
No 14
>2zkr_s 60S ribosomal protein L23A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=44.08 E-value=43 Score=26.53 Aligned_cols=46 Identities=9% Similarity=0.095 Sum_probs=38.5
Q ss_pred EEEecCCChhHHHHHHhhhCCeeEEEeeeCcceeeeEEEEcCCeEEeCCCCCHHHH-HHHhhhcCccee
Q 029868 56 ALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDL-DELSTLLQVPLV 123 (186)
Q Consensus 56 alVpp~l~~~~~~~I~d~LgVeVi~ttIags~lVGsl~vgNn~G~LV~p~~~deEl-k~l~d~l~V~v~ 123 (186)
.|..|-++++....+++. |-.-+.|++.++..|+ +.++++++|+|.
T Consensus 76 iIk~PliTEKa~~~~E~~----------------------n~yvF~Vd~~AnK~qIK~AVEklf~VkV~ 122 (156)
T 2zkr_s 76 IIKFPLTTESAMKKIEDN----------------------NTLVFIVDVKANKHQIKQAVKKLYDIDVA 122 (156)
T ss_dssp CEEEECCSHHHHHHHHHH----------------------CEEEEEECTTCCHHHHHHHHHHHHCCCEE
T ss_pred hHhcccccHHHHHHHHhC----------------------CcEEEEEECCCCHHHHHHHHHHHhCCcce
Confidence 567889999999999882 4467999999999998 567788999983
No 15
>3i4a_A N(G),N(G)-dimethylarginine dimethylaminohydrolase 1; DDAH, nitric oxide synthase regulation, acetylation, metal-binding, zinc; HET: LN5; 1.90A {Homo sapiens} PDB: 3i2e_A* 3p8e_A* 3p8p_A*
Probab=40.43 E-value=1.7e+02 Score=24.71 Aligned_cols=116 Identities=11% Similarity=0.096 Sum_probs=71.5
Q ss_pred CCCceeeEEEeeCcEEE-EecCCChhHHHHHHhhh-CCeeEEEee-eCcceeeeEEEEcCCeEEeCCCC-CHHHHHHHhh
Q 029868 41 RLSALGNCIACNDHVAL-AHTDLDRETEEIIADVL-GVEVFRQTI-AGNILVGSYCSFSNRGGLVHPHT-SIEDLDELST 116 (186)
Q Consensus 41 ~~~aiGn~i~aND~~al-Vpp~l~~~~~~~I~d~L-gVeVi~ttI-ags~lVGsl~vgNn~G~LV~p~~-~deElk~l~d 116 (186)
.... |.++..++.+.+ .+.-.+++.++.+++.| +.+|+...+ .-..+=..++....+-++++|+. .++.++.+++
T Consensus 148 ~lEG-GDvl~~g~~v~vG~s~RTn~~gi~~l~~~l~~~~Vv~v~~~~~~HLDt~~~~l~~~~~lv~~~~~~~~~l~~l~~ 226 (308)
T 3i4a_A 148 TLDG-GDVLFTGREFFVGLSKRTNQRGAEILADTFKDYAVSTVPVADGLHLKSFCSMAGPNLIAIGSSESAQKALKIMQQ 226 (308)
T ss_dssp CCCG-GGEEECSSCEEEEESSSCCHHHHHHHHHHTTTSCEEEEECCTTCCGGGSEEEEETTEEEEECSHHHHHHHHHHHH
T ss_pred cCcc-ceEEEECCEEEEEEchhcCHHHHHHHHHHcCCCeEEEEECCCccChhheEEeeCCCEEEEECchhcHHHHHHHHh
Confidence 4445 899988876333 35567788899999999 877776655 34566677787777778887764 3455677776
Q ss_pred h--cCcceeEEEeecCccceeeEEEEc--Cc-eEEEcCC-CCH-HHHHHHHH
Q 029868 117 L--LQVPLVAGTVNRGSEVIGAGLTVN--DW-TAFCGSD-TTA-TELSVIES 161 (186)
Q Consensus 117 ~--l~V~v~~gtvn~g~~~VGs~ivaN--d~-GalV~p~-tt~-~Ei~~Ied 161 (186)
. .+-+++.-+- .+-+|.+..| ++ +.++.|. ... ...+.+++
T Consensus 227 ~~~~~~~iI~vpe----~~a~N~L~ln~~~~~~vvi~~~~~~~p~~~~~l~~ 274 (308)
T 3i4a_A 227 MSDHRYDKLTVPD----DIAANCIYLNIPNKGHVLLHRTPEEYPESAKVYEK 274 (308)
T ss_dssp TCSSCCEEEEESS----GGGGCCEEEEETTTEEEEEEECTTTCHHHHHHHHH
T ss_pred hccCCCEEEECCh----HHhCCEEEEccCCCCCEEEecCcccCcccHHHHHh
Confidence 3 2334433221 2444545666 33 6888763 232 33344443
No 16
>4a17_R RPL23A, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_R 4a1c_R 4a1e_R
Probab=36.68 E-value=63 Score=25.43 Aligned_cols=45 Identities=11% Similarity=0.113 Sum_probs=36.2
Q ss_pred EEecCCChhHHHHHHhhhCCeeEEEeeeCcceeeeEEEEcCCeEEeCCCCCHHHHH-HHhhhcCccee
Q 029868 57 LAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLD-ELSTLLQVPLV 123 (186)
Q Consensus 57 lVpp~l~~~~~~~I~d~LgVeVi~ttIags~lVGsl~vgNn~G~LV~p~~~deElk-~l~d~l~V~v~ 123 (186)
|..|-++++....+++. |-.-+.|++.++..|++ .++++++|+|.
T Consensus 71 Ik~PliTEKa~~~~E~~----------------------N~~vF~Vd~kAnK~qIK~AVEklf~VkV~ 116 (150)
T 4a17_R 71 VKTPLTTEKAMKKMEDE----------------------NTMVFYVHNRSTKPQIKSAFEKLYNVKVR 116 (150)
T ss_dssp EEEECCSHHHHHHHHHS----------------------SEEEEEECTTCCHHHHHHHHHHHHCCCEE
T ss_pred hhccccCHHHHHHHHhC----------------------CEEEEEEcCCCCHHHHHHHHHHHhCCcee
Confidence 66788899988888753 34458999999999995 67888999983
No 17
>3tve_T 50S ribosomal protein L23; RNA, ribosome, tRNA, translation, mRNA; 3.10A {Thermus thermophilus} PDB: 3pyr_T 3pyo_T 3pyv_T 3pyt_T 3tvh_T 1n88_A 1vsa_R 1vsp_R 2hgj_W 2hgq_W 2hgu_W 2j01_X 2j03_X 2jl6_X 2jl8_X 2v47_X 2v49_X 2wdi_X 2wdj_X 2wdl_X ...
Probab=32.00 E-value=42 Score=24.07 Aligned_cols=28 Identities=21% Similarity=0.367 Sum_probs=23.1
Q ss_pred cCCeEEeCCCCCHHHHH-HHhhhcCccee
Q 029868 96 SNRGGLVHPHTSIEDLD-ELSTLLQVPLV 123 (186)
Q Consensus 96 Nn~G~LV~p~~~deElk-~l~d~l~V~v~ 123 (186)
|-.-+.|+|.++..|++ .++++++|+|.
T Consensus 22 n~~~F~V~~~AnK~qIK~aVe~lf~VkV~ 50 (92)
T 3tve_T 22 GKYTFWVHPKATKTEIKNAVETAFKVKVV 50 (92)
T ss_dssp TEEEEEECTTCCHHHHHHHHHHHTTCCEE
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCcee
Confidence 44568999999999995 67888999983
No 18
>3dtd_A Invasion-associated protein B; structural genomics, PSI-2, Pro structure initiative, NEW YORK structural genomix research consortium; 2.35A {Bartonella henselae}
Probab=31.87 E-value=59 Score=25.54 Aligned_cols=62 Identities=8% Similarity=0.019 Sum_probs=47.0
Q ss_pred EEecCcccccCCCCcEEEeccCCCceeeEEEeeCcEEEEecCCChhHHHHHHhhhCCeeEEE
Q 029868 20 VLVTKMGFSCHTQPQTKRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQ 81 (186)
Q Consensus 20 ~~~~~~~~~l~~~~~v~~~~~~~~aiGn~i~aND~~alVpp~l~~~~~~~I~d~LgVeVi~t 81 (186)
.+.-..+..||.++.+.+=+.+..---.|..|+...|+....++++.++.++.-=..-+.-+
T Consensus 75 ~v~vPlG~~L~~Gv~l~VDd~~~~~~~~~~~C~~~GC~A~~~l~~~li~amk~G~~~~v~~~ 136 (175)
T 3dtd_A 75 NLTVPFGILVSKPVRLQVDEGKAVIETGIRTCVPAGCIVPIVFDKNYVAALRAGKHLKLAMT 136 (175)
T ss_dssp EEEECSSBCTTSCEEEEETTSSCEEEECCCEEETTEEEEEEEECHHHHHHHHHCSEEEEEEE
T ss_pred EEEEeCCcccCCCcEEEEecCCcceEEeEEEecCCeeEEeccCCHHHHHHHHcCCeeEEEEE
Confidence 33556677888888887643555666789999999999999999999999987544444333
No 19
>3iz5_X 60S ribosomal protein L23A (L23P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_X 2go5_4 2j37_4
Probab=30.86 E-value=68 Score=25.24 Aligned_cols=46 Identities=9% Similarity=0.042 Sum_probs=37.1
Q ss_pred EEEecCCChhHHHHHHhhhCCeeEEEeeeCcceeeeEEEEcCCeEEeCCCCCHHHHH-HHhhhcCccee
Q 029868 56 ALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLD-ELSTLLQVPLV 123 (186)
Q Consensus 56 alVpp~l~~~~~~~I~d~LgVeVi~ttIags~lVGsl~vgNn~G~LV~p~~~deElk-~l~d~l~V~v~ 123 (186)
.|..|-++++....+++. |-.-+.|++.++..|++ .++++++|+|.
T Consensus 72 IIk~PliTEKa~~~~E~~----------------------N~~vF~Vd~~AnK~qIK~AVEklf~VkV~ 118 (152)
T 3iz5_X 72 ILKYPLTTESAMKKIEDN----------------------NTLVFIVDLKADKKKIKAAVKKMYDIQAK 118 (152)
T ss_dssp SEEEECCSHHHHHHHHHH----------------------SEEEEEECSSCCSHHHHHHHHHHHTCCEE
T ss_pred HHhhCCcCHHHHHHHHhC----------------------CEEEEEEcCCCCHHHHHHHHHHHhCCcce
Confidence 367789999999888864 33458999999999995 67888999983
No 20
>1jdw_A L-arginine\:glycine amidinotransferase; creatine biosynthesis, catalytic triad, reaction mechanism, novel fold, fivefold pseudosymmetry; 1.90A {Homo sapiens} SCOP: d.126.1.2 PDB: 2jdw_A 3jdw_A* 4jdw_A* 8jdw_A 5jdw_A 6jdw_A* 1jdx_A* 7jdw_A 9jdw_A* 2jdx_A
Probab=30.26 E-value=2.1e+02 Score=25.39 Aligned_cols=105 Identities=8% Similarity=-0.011 Sum_probs=67.3
Q ss_pred cCCChhHHHHHHhhh--CCeeEEEeeeC---cceeeeEEEEcCCeEEeCCCCCHHHHHHHhhhcCcceeEEEeecCc---
Q 029868 60 TDLDRETEEIIADVL--GVEVFRQTIAG---NILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGS--- 131 (186)
Q Consensus 60 p~l~~~~~~~I~d~L--gVeVi~ttIag---s~lVGsl~vgNn~G~LV~p~~~deElk~l~d~l~V~v~~gtvn~g~--- 131 (186)
.-.+++.++.+++.| +.+|+...+.+ ..+=..++....+-++++|...++.++.|++. +.+++.-....-.
T Consensus 271 ~Rtn~~~ie~L~~~L~~~~~Vi~l~~~d~~~~HLDtv~~~v~~~~vlv~~~~~~~~~~~L~~~-~~~iI~~p~~~~~~~~ 349 (423)
T 1jdw_A 271 QVTNYLGIEWMRRHLAPDYRVHIISFKDPNPMHIDATFNIIGPGIVLSNPDRPCHQIDLFKKA-GWTIITPPTPIIPDDH 349 (423)
T ss_dssp SSCCHHHHHHHHHHHTTTCEEEECCBSSCCSSCSTTTEEEEETTEEEECTTSCBTTHHHHHHT-TCEEECCCCCCCCTTS
T ss_pred ccCCHHHHHHHHHHhCCCCEEEEEecCCCCCCchhheEEecCCCeEEEecchhHHHHHHHHhC-CCEEEECCCchhcccc
Confidence 334678889999999 57787777653 34445677777778999999877777777754 4444322110000
Q ss_pred -------cceeeEEEEcCceEEEcCCCCHHHHHHHHHhhCCCC
Q 029868 132 -------EVIGAGLTVNDWTAFCGSDTTATELSVIESVFKLRE 167 (186)
Q Consensus 132 -------~~VGs~ivaNd~GalV~p~tt~~Ei~~IedvL~V~~ 167 (186)
.+-.|.+.+|... ++-|.-.....+.+++. |.++
T Consensus 350 ~~~~s~~~~~~N~L~inpg~-VI~~~~~~~~~~~L~~~-G~~V 390 (423)
T 1jdw_A 350 PLWMSSKWLSMNVLMLDEKR-VMVDANEVPIQKMFEKL-GITT 390 (423)
T ss_dssp CCSSSCGGGGGCCEEEETTE-EEEETTCHHHHHHHHHT-TCEE
T ss_pred ccccccccceeeEEEECCCE-EEEeCCCHHHHHHHHHC-CCEE
Confidence 1234555777544 44566677788888877 7654
No 21
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=30.06 E-value=16 Score=30.03 Aligned_cols=68 Identities=13% Similarity=0.079 Sum_probs=50.9
Q ss_pred EEEecCCChhHHHHHHhhhCCeeEEEeeeCcceeeeEEEEc----CCeEEeCCCCCHHHHHHHhhhcCcceeEEEe
Q 029868 56 ALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFS----NRGGLVHPHTSIEDLDELSTLLQVPLVAGTV 127 (186)
Q Consensus 56 alVpp~l~~~~~~~I~d~LgVeVi~ttIags~lVGsl~vgN----n~G~LV~p~~~deElk~l~d~l~V~v~~gtv 127 (186)
++++-+- +.+.|++.+++||+...+.+..++=++.-+- .-|++-++.+. .+++.+++.|++++..-++
T Consensus 66 VIISRGg---ta~~Lr~~~~iPVV~I~vs~~Dil~aL~~a~~~~~kIavVg~~~~~-~~~~~i~~ll~~~i~~~~~ 137 (225)
T 2pju_A 66 AIIAAGS---NGAYLKSRLSVPVILIKPSGYDVLQFLAKAGKLTSSIGVVTYQETI-PALVAFQKTFNLRLDQRSY 137 (225)
T ss_dssp EEEEEHH---HHHHHHTTCSSCEEEECCCHHHHHHHHHHTTCTTSCEEEEEESSCC-HHHHHHHHHHTCCEEEEEE
T ss_pred EEEeCCh---HHHHHHhhCCCCEEEecCCHHHHHHHHHHHHhhCCcEEEEeCchhh-hHHHHHHHHhCCceEEEEe
Confidence 7777664 7788999999999999999988776665542 23455555554 4688999999999866554
No 22
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=27.96 E-value=9.5 Score=30.30 Aligned_cols=69 Identities=12% Similarity=0.098 Sum_probs=50.3
Q ss_pred EEEecCCChhHHHHHHhhhCCeeEEEeeeCcceeeeEEEEc----CCeEEeCCCCCHHHHHHHhhhcCcceeEEEee
Q 029868 56 ALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFS----NRGGLVHPHTSIEDLDELSTLLQVPLVAGTVN 128 (186)
Q Consensus 56 alVpp~l~~~~~~~I~d~LgVeVi~ttIags~lVGsl~vgN----n~G~LV~p~~~deElk~l~d~l~V~v~~gtvn 128 (186)
++++-+- +.+.|++.+++||+...+.+..++=++.-+- .-|++-++... .+++.+++.|++++..-++.
T Consensus 54 VIISRGg---ta~~lr~~~~iPVV~I~~s~~Dil~al~~a~~~~~kIavvg~~~~~-~~~~~~~~ll~~~i~~~~~~ 126 (196)
T 2q5c_A 54 AIISRGA---TSDYIKKSVSIPSISIKVTRFDTMRAVYNAKRFGNELALIAYKHSI-VDKHEIEAMLGVKIKEFLFS 126 (196)
T ss_dssp EEEEEHH---HHHHHHTTCSSCEEEECCCHHHHHHHHHHHGGGCSEEEEEEESSCS-SCHHHHHHHHTCEEEEEEEC
T ss_pred EEEECCh---HHHHHHHhCCCCEEEEcCCHhHHHHHHHHHHhhCCcEEEEeCcchh-hHHHHHHHHhCCceEEEEeC
Confidence 6777654 7788999999999999999887765555442 22455555554 45889999999998766653
No 23
>2nrr_A Uvrabc system protein C; UVRC, endonuclase, NER, hydrolase; 1.20A {Thermotoga maritima}
Probab=23.31 E-value=81 Score=24.88 Aligned_cols=34 Identities=18% Similarity=0.247 Sum_probs=23.5
Q ss_pred HHHHHHhhhCCee----EE----EeeeCcceeeeEEEEcCCe
Q 029868 66 TEEIIADVLGVEV----FR----QTIAGNILVGSYCSFSNRG 99 (186)
Q Consensus 66 ~~~~I~d~LgVeV----i~----ttIags~lVGsl~vgNn~G 99 (186)
..+.+++.|+.+- ++ ..++|+..|||++|..+.+
T Consensus 3 ~l~~L~~~L~L~~~P~RIE~fDiSh~~G~~~VasmVVf~~g~ 44 (159)
T 2nrr_A 3 ALEELMKLLNMKDFPYRIEGIDISHLQGKYTVASLVVFEDGF 44 (159)
T ss_dssp HHHHHHHHTTCSSCCCEEEEEEEECC---CCEEEEEEEETTE
T ss_pred HHHHHHHHhCCCCCCCEEEEEECCccCCccceEEEEEEeCCc
Confidence 4577889998652 33 3489999999999998766
No 24
>2nrt_A Uvrabc system protein C; UVRC, endonuclease, RNAse H, helix hairpin helix, NER, hydrolase; 1.50A {Thermotoga maritima} PDB: 2nrv_A 2nrw_A 2nrx_A 2nrz_A
Probab=20.05 E-value=1.6e+02 Score=24.20 Aligned_cols=36 Identities=19% Similarity=0.291 Sum_probs=28.7
Q ss_pred hhHHHHHHhhhCCee----EE----EeeeCcceeeeEEEEcCCe
Q 029868 64 RETEEIIADVLGVEV----FR----QTIAGNILVGSYCSFSNRG 99 (186)
Q Consensus 64 ~~~~~~I~d~LgVeV----i~----ttIags~lVGsl~vgNn~G 99 (186)
....+.+++.|+.+- ++ ..++|+..|||++|..+.+
T Consensus 6 ~~~l~~L~~~l~l~~~p~rIE~fDiSh~~G~~~V~smVvf~~g~ 49 (220)
T 2nrt_A 6 KEALEELMKLLNMKDFPYRIEGIDISHLQGKYTVASLVVFEDGF 49 (220)
T ss_dssp HHHHHHHHHHTTCSSCCCEEEEEEEEEETTTEEEEEEEEEETTE
T ss_pred HHHHHHHHHHhCCCCCCCEEEEEECCccCCccceEEEEEEeCCc
Confidence 456788999998653 33 3599999999999997766
Done!