BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029869
(186 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3MBT|A Chain A, Structure Of Monomeric Blc From E. Coli
Length = 168
Score = 83.2 bits (204), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 58/173 (33%), Positives = 83/173 (47%), Gaps = 14/173 (8%)
Query: 5 KEMEVVRGLDIKRYMGRWYEIASFPSRNQPKNGADTRATYTLNEDGTVHVRNETWSD--G 62
+ + VV D KRY+G WYEIA F R + + ATY+L +DG ++V N+ ++ G
Sbjct: 8 RGVTVVNNFDAKRYLGTWYEIARFDHRFE-RGLEKVTATYSLRDDGGLNVINKGYNPDRG 66
Query: 63 KRGSIEGTAYKADPKSDEAKLXXXXXXXXXXXXXXXXGNYWVLYIDDNYQYALIGEPTRK 122
EG AY + A G Y V+ +D Y++AL+ P R
Sbjct: 67 MWQQSEGKAYFTGAPTRAA--------LKVSFFGPFYGGYNVIALDREYRHALVSGPDRD 118
Query: 123 YLWILCREPHMDEAIYNQLVEKATSEGYDVSKLHRTPQSDNPPEAEESPQDTK 175
YLWIL R P + + + +++ AT EG+DVSK Q P A PQ K
Sbjct: 119 YLWILSRTPTISDEVKQEMLAVATREGFDVSKFIWVQQ---PGSAWSHPQFEK 168
>pdb|2ACO|A Chain A, Xray Structure Of Blc Dimer In Complex With Vaccenic Acid
pdb|2ACO|B Chain B, Xray Structure Of Blc Dimer In Complex With Vaccenic Acid
Length = 173
Score = 82.0 bits (201), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 77/153 (50%), Gaps = 11/153 (7%)
Query: 5 KEMEVVRGLDIKRYMGRWYEIASFPSRNQPKNGADTRATYTLNEDGTVHVRNETWS--DG 62
+ + VV D KRY+G WYEIA F R + + ATY+L +DG ++V N+ ++ G
Sbjct: 22 RGVTVVNNFDAKRYLGTWYEIARFDHRFE-RGLEKVTATYSLRDDGGLNVINKGYNPDRG 80
Query: 63 KRGSIEGTAYKADPKSDEAKLXXXXXXXXXXXXXXXXGNYWVLYIDDNYQYALIGEPTRK 122
EG AY + A G Y V+ +D Y++AL+ P R
Sbjct: 81 MWQQSEGKAYFTGAPTRAA--------LKVSFFGPFYGGYNVIALDREYRHALVCGPDRD 132
Query: 123 YLWILCREPHMDEAIYNQLVEKATSEGYDVSKL 155
YLWIL R P + + + +++ AT EG+DVSK
Sbjct: 133 YLWILSRTPTISDEVKQEMLAVATREGFDVSKF 165
>pdb|1QWD|A Chain A, Crystal Structure Of A Bacterial Lipocalin, The Blc Gene
Product From E. Coli
pdb|1QWD|B Chain B, Crystal Structure Of A Bacterial Lipocalin, The Blc Gene
Product From E. Coli
Length = 177
Score = 82.0 bits (201), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 77/153 (50%), Gaps = 11/153 (7%)
Query: 5 KEMEVVRGLDIKRYMGRWYEIASFPSRNQPKNGADTRATYTLNEDGTVHVRNETWS--DG 62
+ + VV D KRY+G WYEIA F R + + ATY+L +DG ++V N+ ++ G
Sbjct: 26 RGVTVVNNFDAKRYLGTWYEIARFDHRFE-RGLEKVTATYSLRDDGGLNVINKGYNPDRG 84
Query: 63 KRGSIEGTAYKADPKSDEAKLXXXXXXXXXXXXXXXXGNYWVLYIDDNYQYALIGEPTRK 122
EG AY + A G Y V+ +D Y++AL+ P R
Sbjct: 85 MWQQSEGKAYFTGAPTRAA--------LKVSFFGPFYGGYNVIALDREYRHALVCGPDRD 136
Query: 123 YLWILCREPHMDEAIYNQLVEKATSEGYDVSKL 155
YLWIL R P + + + +++ AT EG+DVSK
Sbjct: 137 YLWILSRTPTISDEVKQEMLAVATREGFDVSKF 169
>pdb|2HZQ|A Chain A, Crystal Structure Of Human Apolipoprotein D (Apod) In
Complex With Progesterone
pdb|2HZR|A Chain A, Crystal Structure Of Human Apolipoprotein D (Apod)
Length = 174
Score = 53.9 bits (128), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 65/160 (40%), Gaps = 10/160 (6%)
Query: 9 VVRGLDIKRYMGRWYEIASFPSRNQPKNGADTRATYTLNEDGTVHVRN-ETWSDGKRGSI 67
V D+ +Y GRWYEI P+ + NG +A Y+L E+G + V N E +DG I
Sbjct: 11 VQENFDVNKYPGRWYEIEKIPTTFE--NGRCIQANYSLXENGKIKVLNQELRADGTVNQI 68
Query: 68 EGTAYKAD---PKSDEAKLXXXXXXXXXXXXXXXXGNYWVLYIDDNYQYALIGEPTRKYL 124
EG A + P E K NY ++Y + + + +
Sbjct: 69 EGEATPVNLTEPAKLEVKFSWFXPSAPYHILATDYENYALVYSCTSISQSFHVD----FA 124
Query: 125 WILCREPHMDEAIYNQLVEKATSEGYDVSKLHRTPQSDNP 164
WIL R + + L TS DV K T Q + P
Sbjct: 125 WILARNVALPPETVDSLKNILTSNNIDVKKXTVTDQVNCP 164
>pdb|3EBW|A Chain A, Crystal Structure Of Major Allergens, Per A 4 From
Cockroaches
pdb|3EBW|B Chain B, Crystal Structure Of Major Allergens, Per A 4 From
Cockroaches
Length = 163
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 32/60 (53%)
Query: 12 GLDIKRYMGRWYEIASFPSRNQPKNGADTRATYTLNEDGTVHVRNETWSDGKRGSIEGTA 71
GLD +Y+G WYE+ P+ ++ YTL+E+G + V + +++ RG I T
Sbjct: 12 GLDXTKYVGTWYELFRTPNSDEEDFTNCEYDKYTLDENGVIQVTSVAYTNSIRGFITSTG 71
>pdb|1BBP|A Chain A, Molecular Structure Of The Bilin Binding Protein (Bbp)
From Pieris Brassicae After Refinement At 2.0 Angstroms
Resolution.
pdb|1BBP|B Chain B, Molecular Structure Of The Bilin Binding Protein (Bbp)
From Pieris Brassicae After Refinement At 2.0 Angstroms
Resolution.
pdb|1BBP|C Chain C, Molecular Structure Of The Bilin Binding Protein (Bbp)
From Pieris Brassicae After Refinement At 2.0 Angstroms
Resolution.
pdb|1BBP|D Chain D, Molecular Structure Of The Bilin Binding Protein (Bbp)
From Pieris Brassicae After Refinement At 2.0 Angstroms
Resolution
Length = 173
Score = 35.8 bits (81), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Query: 6 EMEVVRGLDIKRYMGRWYEIASFPSRNQPKNGADTRATYTLNEDGTVHVRNETWSDGKRG 65
E++ V D Y G+W+E+A +P+ + K G A YT E +V V N GK
Sbjct: 10 EVKPVDNFDWSNYHGKWWEVAKYPNSVE-KYGKCGWAEYT-PEGKSVKVSNYHVIHGKEY 67
Query: 66 SIEGTAY 72
IEGTAY
Sbjct: 68 FIEGTAY 74
>pdb|1T0V|A Chain A, Nmr Solution Structure Of The Engineered Lipocalin
Flua(R95k) Northeast Structural Genomics Target Or17
Length = 184
Score = 35.4 bits (80), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Query: 6 EMEVVRGLDIKRYMGRWYEIASFPSRNQPKNGADTRATYTLNEDGTVHVRNETWSDGKRG 65
E++ V D +Y G+W+E+A +PS N K G A YT E +V V GK
Sbjct: 10 EVKPVDNFDWSQYHGKWWEVAKYPSPNG-KYGKCGWAEYT-PEGKSVKVSRYDVIHGKEY 67
Query: 66 SIEGTAY 72
+EGTAY
Sbjct: 68 FMEGTAY 74
>pdb|1N0S|A Chain A, Engineered Lipocalin Flua In Complex With Fluorescein
pdb|1N0S|B Chain B, Engineered Lipocalin Flua In Complex With Fluorescein
Length = 184
Score = 35.0 bits (79), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Query: 6 EMEVVRGLDIKRYMGRWYEIASFPSRNQPKNGADTRATYTLNEDGTVHVRNETWSDGKRG 65
E++ V D +Y G+W+E+A +PS N K G A YT E +V V GK
Sbjct: 10 EVKPVDNFDWSQYHGKWWEVAKYPSPNG-KYGKCGWAEYT-PEGKSVKVSRYDVIHGKEY 67
Query: 66 SIEGTAY 72
+EGTAY
Sbjct: 68 FMEGTAY 74
>pdb|1KXO|A Chain A, Engineered Lipocalin Diga16 : Apo-Form
pdb|1LKE|A Chain A, Engineered Lipocalin Diga16 In Complex With Digoxigenin
pdb|1LNM|A Chain A, Anticalin Diga16 In Complex With Digitoxigenin
Length = 184
Score = 30.8 bits (68), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Query: 6 EMEVVRGLDIKRYMGRWYEIASFPSRNQPKNGADTRATYTLNEDGTVHVRNETWSDGKRG 65
E++ V D +Y G+W+++A++P + K G A YT E +V V + GK
Sbjct: 10 EVKPVDNFDWSQYHGKWWQVAAYPD-HITKYGKCGWAEYT-PEGKSVKVSRYSVIHGKEY 67
Query: 66 SIEGTAY 72
EGTAY
Sbjct: 68 FSEGTAY 74
>pdb|1EPA|A Chain A, Structure Of The Epididymal Retinoic Acid-Binding
Protein At 2.1 Angstroms Resolution
pdb|1EPA|B Chain B, Structure Of The Epididymal Retinoic Acid-Binding
Protein At 2.1 Angstroms Resolution
pdb|1EPB|A Chain A, Structure Of The Epididymal Retinoic Acid-Binding
Protein At 2.1 Angstroms Resolution
pdb|1EPB|B Chain B, Structure Of The Epididymal Retinoic Acid-Binding
Protein At 2.1 Angstroms Resolution
Length = 164
Score = 30.0 bits (66), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
Query: 9 VVRGLDIKRYMGRWYEIASFPSR 31
VV+ DI +++G WYEIA F S+
Sbjct: 2 VVKDFDISKFLGFWYEIA-FASK 23
>pdb|1Z24|A Chain A, The Molecular Structure Of Insecticyanin From The
Tobacco Hornworm Manduca Sexta L. At 2.6 A Resolution
Length = 189
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
Query: 6 EMEVVRGLDIKRYMGRWYEIASFPSRNQPKNGADTRATYTLNEDG-TVHVRNETWSDGKR 64
+++ V D+ + G W+EIA P N+ G T A Y DG V N S+G +
Sbjct: 11 DVKPVNDFDLSAFAGAWHEIAKLPLENE-NQGKCTIAEYKY--DGKKASVYNSFVSNGVK 67
Query: 65 GSIEG 69
+EG
Sbjct: 68 EYMEG 72
>pdb|2Q7Z|A Chain A, Solution Structure Of The 30 Scr Domains Of Human Complement
Receptor 1
Length = 1931
Score = 26.6 bits (57), Expect = 7.6, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Query: 132 HMDEAIYNQLVEKATSEGYDV---SKLHRTPQSDNPPEA 167
H D Q V + GYD+ + LH TPQ D PEA
Sbjct: 1171 HQDNFSPGQEVFYSCEPGYDLRGAASLHCTPQGDWSPEA 1209
>pdb|2PK2|A Chain A, Cyclin Box Structure Of The P-Tefb Subunit Cyclin T1
Derived From A Fusion Complex With Eiav Tat
pdb|2PK2|B Chain B, Cyclin Box Structure Of The P-Tefb Subunit Cyclin T1
Derived From A Fusion Complex With Eiav Tat
pdb|2PK2|C Chain C, Cyclin Box Structure Of The P-Tefb Subunit Cyclin T1
Derived From A Fusion Complex With Eiav Tat
pdb|2PK2|D Chain D, Cyclin Box Structure Of The P-Tefb Subunit Cyclin T1
Derived From A Fusion Complex With Eiav Tat
Length = 358
Score = 26.6 bits (57), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 22/40 (55%)
Query: 100 GNYWVLYIDDNYQYALIGEPTRKYLWILCREPHMDEAIYN 139
G +W Y+D L+ E T ++L IL + P+ + I+N
Sbjct: 218 GKHWWEYVDATVTLELLDELTHEFLQILEKTPNRLKRIWN 257
>pdb|3MI9|B Chain B, Crystal Structure Of Hiv-1 Tat Complexed With Human P-Tefb
pdb|3MIA|B Chain B, Crystal Structure Of Hiv-1 Tat Complexed With Atp-Bound
Human P-Tefb
Length = 266
Score = 26.2 bits (56), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 22/40 (55%)
Query: 100 GNYWVLYIDDNYQYALIGEPTRKYLWILCREPHMDEAIYN 139
G +W Y+D L+ E T ++L IL + P+ + I+N
Sbjct: 218 GKHWWEYVDATVTLELLDELTHEFLQILEKTPNRLKRIWN 257
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.132 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,901,053
Number of Sequences: 62578
Number of extensions: 226623
Number of successful extensions: 392
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 365
Number of HSP's gapped (non-prelim): 20
length of query: 186
length of database: 14,973,337
effective HSP length: 93
effective length of query: 93
effective length of database: 9,153,583
effective search space: 851283219
effective search space used: 851283219
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 48 (23.1 bits)