Query 029869
Match_columns 186
No_of_seqs 126 out of 1045
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 04:56:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029869.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029869hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4824 Apolipoprotein D/Lipoc 100.0 4.6E-42 9.9E-47 261.5 12.5 184 1-186 30-224 (224)
2 PF08212 Lipocalin_2: Lipocali 100.0 3.8E-39 8.1E-44 241.5 18.2 142 13-160 1-143 (143)
3 COG3040 Blc Bacterial lipocali 100.0 1.1E-37 2.5E-42 232.9 16.5 148 6-162 24-173 (174)
4 PRK10477 outer membrane lipopr 100.0 2E-37 4.4E-42 239.8 15.7 149 5-162 26-176 (177)
5 PF00061 Lipocalin: Lipocalin 99.8 4.3E-19 9.3E-24 131.2 9.1 132 19-161 1-143 (144)
6 PF07137 VDE: Violaxanthin de- 99.7 2.3E-15 5.1E-20 115.2 15.0 151 7-167 28-193 (198)
7 PF03973 Triabin: Triabin; In 99.4 1.2E-11 2.5E-16 93.0 11.2 119 3-132 11-138 (148)
8 PLN02372 violaxanthin de-epoxi 99.4 2.3E-11 5E-16 102.7 13.9 151 8-167 196-360 (455)
9 PF02087 Nitrophorin: Nitropho 99.1 6.4E-09 1.4E-13 78.2 14.5 153 5-166 3-172 (178)
10 PF11032 ApoM: Apolipoprotein 98.0 0.001 2.3E-08 51.7 16.8 143 2-161 21-178 (186)
11 PF00356 LacI: Bacterial regul 71.5 2.2 4.8E-05 25.4 1.0 27 127-153 20-46 (46)
12 PF08247 ENOD40: ENOD40 protei 61.7 5.9 0.00013 16.7 1.1 10 177-186 3-12 (12)
13 PF10346 Con-6: Conidiation pr 56.9 18 0.00038 20.5 2.8 21 129-149 15-35 (36)
14 PF10681 Rot1: Chaperone for p 54.3 1.1E+02 0.0024 24.4 9.0 98 22-138 43-157 (212)
15 PF15060 PPDFL: Differentiatio 52.7 8.7 0.00019 27.1 1.4 15 172-186 48-62 (110)
16 PF07215 DUF1419: Protein of u 45.0 16 0.00034 25.9 1.7 12 16-27 39-50 (111)
17 PF08092 Toxin_22: Magi peptid 37.3 18 0.00038 20.6 0.8 20 162-184 14-33 (38)
18 TIGR03067 Planc_TIGR03067 Plan 35.8 1.5E+02 0.0033 20.6 10.9 93 14-118 3-95 (107)
19 PRK10727 DNA-binding transcrip 35.7 32 0.0007 28.4 2.5 29 126-154 21-49 (343)
20 PRK09492 treR trehalose repres 35.2 36 0.00077 27.7 2.7 28 126-153 24-51 (315)
21 PF14794 DUF4479: Domain of un 34.7 41 0.00088 22.0 2.4 21 132-152 47-67 (73)
22 smart00354 HTH_LACI helix_turn 34.6 38 0.00082 21.5 2.2 28 127-154 21-48 (70)
23 PRK10703 DNA-binding transcrip 34.1 32 0.00069 28.4 2.3 29 126-154 21-49 (341)
24 PF01402 RHH_1: Ribbon-helix-h 30.5 14 0.00031 20.4 -0.3 23 133-155 6-28 (39)
25 PRK09526 lacI lac repressor; R 30.4 44 0.00096 27.5 2.5 29 126-154 25-53 (342)
26 COG2894 MinD Septum formation 29.5 46 0.00099 27.1 2.3 40 112-151 71-115 (272)
27 PF11012 DUF2850: Protein of u 29.4 1.5E+02 0.0032 19.8 4.4 38 18-64 2-43 (79)
28 TIGR01481 ccpA catabolite cont 29.3 44 0.00095 27.3 2.3 29 126-154 21-49 (329)
29 PRK10014 DNA-binding transcrip 29.2 55 0.0012 26.9 2.9 29 126-154 26-54 (342)
30 PRK10423 transcriptional repre 29.0 44 0.00096 27.2 2.3 28 127-154 19-46 (327)
31 PF12992 DUF3876: Domain of un 28.9 1.1E+02 0.0024 21.1 3.8 27 1-30 1-27 (95)
32 PRK10401 DNA-binding transcrip 28.7 43 0.00093 27.7 2.2 29 126-154 21-49 (346)
33 TIGR02802 Pal_lipo peptidoglyc 28.2 54 0.0012 22.3 2.3 37 130-166 49-85 (104)
34 PRK14987 gluconate operon tran 28.0 58 0.0013 26.7 2.8 29 126-154 25-53 (331)
35 COG1609 PurR Transcriptional r 27.8 48 0.001 27.9 2.3 29 126-154 20-48 (333)
36 COG4544 Uncharacterized conser 27.1 64 0.0014 26.3 2.7 31 121-159 85-115 (260)
37 cd01392 HTH_LacI Helix-turn-he 26.5 50 0.0011 19.2 1.6 25 130-154 21-45 (52)
38 TIGR02384 RelB_DinJ addiction 26.5 54 0.0012 21.9 1.9 23 132-154 8-30 (83)
39 PRK11235 bifunctional antitoxi 26.3 51 0.0011 22.0 1.7 22 133-154 8-29 (80)
40 PF07409 GP46: Phage protein G 26.1 69 0.0015 23.0 2.5 27 119-146 41-67 (116)
41 PF12651 RHH_3: Ribbon-helix-h 25.9 28 0.00061 20.3 0.4 25 132-156 8-32 (44)
42 smart00733 Mterf Mitochondrial 25.2 80 0.0017 15.4 2.2 18 134-151 14-31 (31)
43 PRK10339 DNA-binding transcrip 25.0 72 0.0016 26.1 2.9 29 126-154 21-51 (327)
44 COG3077 RelB DNA-damage-induci 24.9 44 0.00095 22.8 1.3 23 132-154 10-32 (88)
45 PF04221 RelB: RelB antitoxin; 23.7 39 0.00085 22.4 0.9 22 133-154 8-29 (83)
46 TIGR02417 fruct_sucro_rep D-fr 23.1 66 0.0014 26.3 2.3 23 132-154 28-50 (327)
47 PF09652 Cas_VVA1548: Putative 21.9 83 0.0018 21.7 2.1 25 125-157 1-25 (93)
48 TIGR02405 trehalos_R_Ecol treh 21.6 74 0.0016 25.9 2.3 29 126-154 21-49 (311)
49 PF00691 OmpA: OmpA family; I 21.3 86 0.0019 20.7 2.2 36 130-165 48-83 (97)
50 TIGR01911 HesB_rel_seleno HesB 21.0 1.4E+02 0.003 20.2 3.2 34 132-165 5-39 (92)
51 TIGR03241 arg_catab_astB succi 20.8 2.7E+02 0.0059 24.6 5.5 44 119-162 186-238 (443)
52 PRK11303 DNA-binding transcrip 20.8 78 0.0017 25.8 2.3 23 132-154 29-51 (328)
53 PRK08561 rps15p 30S ribosomal 20.6 80 0.0017 23.8 2.0 42 133-186 28-69 (151)
54 PF02662 FlpD: Methyl-viologen 20.6 1.2E+02 0.0026 21.8 2.9 25 134-158 75-99 (124)
55 COG3914 Spy Predicted O-linked 20.2 2.1E+02 0.0044 26.6 4.8 39 121-161 459-497 (620)
56 PF10007 DUF2250: Uncharacteri 20.0 26 0.00057 24.1 -0.6 33 119-151 19-51 (92)
No 1
>KOG4824 consensus Apolipoprotein D/Lipocalin [Cell wall/membrane/envelope biogenesis]
Probab=100.00 E-value=4.6e-42 Score=261.48 Aligned_cols=184 Identities=41% Similarity=0.655 Sum_probs=162.7
Q ss_pred CCCCCCCccccCCCccccceeeEEEEEeCCCCCCCCCcceEEEEEECC-CCcEEEEEEEEe--CCceeeEEEEEEEcCCC
Q 029869 1 MASKKEMEVVRGLDIKRYMGRWYEIASFPSRNQPKNGADTRATYTLNE-DGTVHVRNETWS--DGKRGSIEGTAYKADPK 77 (186)
Q Consensus 1 ~~~~~~v~~~~nFDl~ky~G~WYeia~~~~~~~~~~~~c~~~~yt~~~-~g~i~v~~~~~~--~g~~~~~~g~a~~~~~~ 77 (186)
|-.||++++++|||++||+|+||||++.|..|+.+. -|++..|+... +|.|.|.|.++. +|....++|.|+++++.
T Consensus 30 lg~cpnypv~knFnv~RylGrWYEVas~p~~fe~~~-gctt~~y~~~nkngkI~Vln~~v~r~dG~~n~ieG~atpvn~~ 108 (224)
T KOG4824|consen 30 LGECPNYPVAKNFNVERYLGRWYEVASFPRGFEGKG-GCTTGAYTFDNKNGKIHVLNECVHRPDGKINFIEGKATPVNED 108 (224)
T ss_pred eccCCCCccccCCChhhhcceeeeeeccccccccCC-CceeeeeEecCCCceEEEeeeeeecCCCccceeeeeeeecCCc
Confidence 346999999999999999999999999999999764 59999998864 899999999983 99999999999999876
Q ss_pred CCcceEEEEEeCCCCC-CcccccceEEEEEEeCCCcEEEeec-------CCceEEEEEecCCCCCHHHHHHHHHHHHhcC
Q 029869 78 SDEAKLKVKFYVPPFF-PIIPVVGNYWVLYIDDNYQYALIGE-------PTRKYLWILCREPHMDEAIYNQLVEKATSEG 149 (186)
Q Consensus 78 ~~~g~~~v~~~~~~~l-~~~~~~~~y~Vl~tDydY~yAiv~~-------~~~~~~wIlsR~~~ls~~~~~~~~~~~~~~G 149 (186)
+....+++.+..+.++ .+.++...|+|+.|||+ +||++++ +|.+++|||||+|++.+++++++.++|.+.|
T Consensus 109 s~k~e~kf~~~~p~~~~~~l~~~~iy~Vl~tdye-nya~~ysc~alisl~h~df~wIlsRtpn~epEt~~klkn~l~~~g 187 (224)
T KOG4824|consen 109 SDKAELKFEFQEPIFEKCFLRFPPIYFVLGTDYE-NYADDYSCHALISLKHKDFLWILSRTPNMEPETIAKLKNKLAEEG 187 (224)
T ss_pred hhhhcceeEEecCchHhhccCCCCCcceecccHh-heeccccccceeccCCCceEEEEecCCCCChHHHHHHHHHHHHcC
Confidence 5566777776655532 23346789999999998 8887766 5788999999999999999999999999999
Q ss_pred CCCCCeEEcCCCCCCCCcCCCCCCCcceeEEeeccCC
Q 029869 150 YDVSKLHRTPQSDNPPEAEESPQDTKGIWWIKSIFGK 186 (186)
Q Consensus 150 ~d~~~l~~~~q~~c~~~~~~~~~~~~~~~~~~~~~~~ 186 (186)
+|+++|..++|.+|+++--|+.-|.+|-||-||+|||
T Consensus 188 yDpeKl~~Tpq~dcp~~s~~~~~~~~~~~~~~sl~~~ 224 (224)
T KOG4824|consen 188 YDPEKLHDTPQSDCPPESAEAAADMKGPGMEKSLFGK 224 (224)
T ss_pred CCHHHhccCCccCCChhhhhhHHhccCcchhhhhccC
Confidence 9999999999999999999999999999999999997
No 2
>PF08212 Lipocalin_2: Lipocalin-like domain; InterPro: IPR000566 Proteins which transport small hydrophobic molecules such as steroids, bilins, retinoids, and lipids share limited regions of sequence homology and a common tertiary structure architecture [, , , , ]. This is an eight stranded antiparallel beta-barrel with a repeated + 1 topology enclosing a internal ligand binding site [, ]. The name 'lipocalin' has been proposed [] for this protein family, but cytosolic fatty-acid binding proteins are also included. The sequences of most members of the family, the core or kernal lipocalins, are characterised by three short conserved stretches of residues, while others, the outlier lipocalin group, share only one or two of these [, ]. Proteins known to belong to this family include alpha-1-microglobulin (protein HC); alpha-1-acid glycoprotein (orosomucoid) []; aphrodisin; apolipoprotein D; beta-lactoglobulin; complement component C8 gamma chain []; crustacyanin []; epididymal-retinoic acid binding protein (E-RABP) []; insectacyanin; odorant-binding protein (OBP); human pregnancy-associated endometrial alpha-2 globulin; probasin (PB), a rat prostatic protein; prostaglandin D synthase (5.3.99.2 from EC) []; purpurin; Von Ebner's gland protein (VEGP) []; and lizard epididymal secretory protein IV (LESP IV) [].; GO: 0005488 binding; PDB: 3EBW_B 1QWD_A 2ACO_A 3MBT_A.
Probab=100.00 E-value=3.8e-39 Score=241.52 Aligned_cols=142 Identities=51% Similarity=0.929 Sum_probs=116.5
Q ss_pred CCccccceeeEEEEEeCCCCCCCCCcceEEEEEECCCCcEEEEEEEEe-CCceeeEEEEEEEcCCCCCcceEEEEEeCCC
Q 029869 13 LDIKRYMGRWYEIASFPSRNQPKNGADTRATYTLNEDGTVHVRNETWS-DGKRGSIEGTAYKADPKSDEAKLKVKFYVPP 91 (186)
Q Consensus 13 FDl~ky~G~WYeia~~~~~~~~~~~~c~~~~yt~~~~g~i~v~~~~~~-~g~~~~~~g~a~~~~~~~~~g~~~v~~~~~~ 91 (186)
||++||+|+||||||+|+.+|.+ ..|++++|++.++|.|.|.|+|+. +|+...+.|.|++.++. .+|+|.|+|....
T Consensus 1 ~Dl~rY~G~WYEiar~p~~~q~~-~~~~~a~Yt~~~dg~i~V~n~~~~~~g~~~~~~g~a~~~~~~-~~~~l~V~f~~~~ 78 (143)
T PF08212_consen 1 VDLDRYMGTWYEIARYPNFFQRG-CVCVTAEYTLRDDGTISVRNSCRRPDGKIKTIRGTATVVDPS-GPAKLKVRFPGIP 78 (143)
T ss_dssp --CCCC-EEEEEEEEE--CCCTT--ECEEEEEEE-TTS-EEEEEEEEETTTCCCEEEEEEEESSBT-TSSEEEEESST--
T ss_pred CChHHcCEeeeEEEEECCcccce-eeeeeeeEEEcCCCEEEEEEEEEcCCCCEEEEEeEEEEcCCC-CccEEEEEEeccc
Confidence 79999999999999999999964 489999999999999999999996 99999999999998875 4899999995321
Q ss_pred CCCcccccceEEEEEEeCCCcEEEeecCCceEEEEEecCCCCCHHHHHHHHHHHHhcCCCCCCeEEcCC
Q 029869 92 FFPIIPVVGNYWVLYIDDNYQYALIGEPTRKYLWILCREPHMDEAIYNQLVEKATSEGYDVSKLHRTPQ 160 (186)
Q Consensus 92 ~l~~~~~~~~y~Vl~tDydY~yAiv~~~~~~~~wIlsR~~~ls~~~~~~~~~~~~~~G~d~~~l~~~~q 160 (186)
+ +..++||||+|||||++++++.++.+++|||||+|+++++.+++++++++++|||+++|+.++|
T Consensus 79 ~----~~~~~YwVl~~D~dY~~~iv~~~~~~~~WILsR~p~~~~~~~~~~~~~~~~~G~d~~~l~~~~Q 143 (143)
T PF08212_consen 79 F----PPKGNYWVLYTDYDYSWAIVGSPDREYLWILSRTPQLSEETYAEILDRAKQQGYDVSKLIWTPQ 143 (143)
T ss_dssp -----TEEEEEEEEEEBTTSSEEEEEECCCCEEEEEESSSS--HHHHHHHHHHHHHTT--GGGEEE---
T ss_pred c----CCCcceEEEEEcCCccEEEEecCCCCEEEEEeCCCCCCHHHHHHHHHHHHHcCCCHHHeEECCC
Confidence 1 4578999999999999999999999999999999999999999999999999999999999988
No 3
>COG3040 Blc Bacterial lipocalin [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=1.1e-37 Score=232.94 Aligned_cols=148 Identities=41% Similarity=0.785 Sum_probs=135.5
Q ss_pred CCccccCCCccccceeeEEEEEeCCCCCCCCCcceEEEEEECCCCcEEEEEEEEe-CC-ceeeEEEEEEEcCCCCCcceE
Q 029869 6 EMEVVRGLDIKRYMGRWYEIASFPSRNQPKNGADTRATYTLNEDGTVHVRNETWS-DG-KRGSIEGTAYKADPKSDEAKL 83 (186)
Q Consensus 6 ~v~~~~nFDl~ky~G~WYeia~~~~~~~~~~~~c~~~~yt~~~~g~i~v~~~~~~-~g-~~~~~~g~a~~~~~~~~~g~~ 83 (186)
.++++.+||+++|+|+||||||+|..|+.+| .-++++|.+.+++.|.|.|.|+. ++ +++.+.|.|+++++. ..+++
T Consensus 24 ~p~~~~~~dl~~Y~G~WyEvaR~p~~f~~gc-~~vtA~Y~l~d~~~I~V~n~c~~~~~~~~~~ieGkA~i~~~~-~~a~L 101 (174)
T COG3040 24 SPKPVNNFDLQRYLGKWYEVARLPMRFEKGC-VQVTATYSLRDDGGISVINRCRTGDGGKWSQIEGKAKIVDNA-TRAKL 101 (174)
T ss_pred cCCcccccchhhcceeeeeeecccchhhhcc-eeeEeEEEEecCCceEEEeccccCCCCCceeecceEEEecCc-cccEE
Confidence 4777778999999999999999999999864 56889999999999999999997 44 689999999999886 47999
Q ss_pred EEEEeCCCCCCcccccceEEEEEEeCCCcEEEeecCCceEEEEEecCCCCCHHHHHHHHHHHHhcCCCCCCeEEcCCCC
Q 029869 84 KVKFYVPPFFPIIPVVGNYWVLYIDDNYQYALIGEPTRKYLWILCREPHMDEAIYNQLVEKATSEGYDVSKLHRTPQSD 162 (186)
Q Consensus 84 ~v~~~~~~~l~~~~~~~~y~Vl~tDydY~yAiv~~~~~~~~wIlsR~~~ls~~~~~~~~~~~~~~G~d~~~l~~~~q~~ 162 (186)
+|+|.+ |+.++|||++.|.+|+||||++++++++|||||+|++|++.++++++.+++.|||.+++++++|.+
T Consensus 102 kVsF~~-------pF~g~Y~Vl~~d~eYs~aiVgsPdr~ylWlLsRtP~~s~~~~~~ml~~ak~~Gfdv~~li~~~~~g 173 (174)
T COG3040 102 KVSFFG-------PFYGDYWVLALDPEYSWAIVGSPDREYLWLLSRTPTLSQETLKRMLEIAKRRGFDVSKLIFVQQPG 173 (174)
T ss_pred EEEecC-------CccccEEEEEECCCccEEEEeCCCcceEEEEecCCCCCHHHHHHHHHHHHHcCCCcceeEecCCCC
Confidence 999953 456999999999999999999999999999999999999999999999999999999999999864
No 4
>PRK10477 outer membrane lipoprotein Blc; Provisional
Probab=100.00 E-value=2e-37 Score=239.79 Aligned_cols=149 Identities=41% Similarity=0.702 Sum_probs=135.7
Q ss_pred CCCccccCCCccccceeeEEEEEeCCCCCCCCCcceEEEEEECCCCcEEEEEEEEe--CCceeeEEEEEEEcCCCCCcce
Q 029869 5 KEMEVVRGLDIKRYMGRWYEIASFPSRNQPKNGADTRATYTLNEDGTVHVRNETWS--DGKRGSIEGTAYKADPKSDEAK 82 (186)
Q Consensus 5 ~~v~~~~nFDl~ky~G~WYeia~~~~~~~~~~~~c~~~~yt~~~~g~i~v~~~~~~--~g~~~~~~g~a~~~~~~~~~g~ 82 (186)
+.++++++||++||+|+||||++.|+.||.++ .|++++|++.++|++.|.|++.. +|....+.|.|..+++. .+++
T Consensus 26 ~~~~~~~~fDl~ry~G~WYeIar~~~~fe~~~-~~~~a~Y~~~~~g~i~V~n~~~~~~~g~~~~~~g~a~~~~~~-~~~~ 103 (177)
T PRK10477 26 KGVTVVNNFDAKRYLGTWYEIARFDHRFERGL-EKVTATYSLRDDGGLNVINKGYNPDRGMWQESEGKAYFTGAP-TRAA 103 (177)
T ss_pred CCCcccCccCHHHhccHHHHhhcCCchhhcCc-eeEEEEEEECCCCcEEEEEeeEcCCCCCEEEEEEEEEecCCC-CCeE
Confidence 57899999999999999999999999998764 79999999999999999999986 37778999999887765 5799
Q ss_pred EEEEEeCCCCCCcccccceEEEEEEeCCCcEEEeecCCceEEEEEecCCCCCHHHHHHHHHHHHhcCCCCCCeEEcCCCC
Q 029869 83 LKVKFYVPPFFPIIPVVGNYWVLYIDDNYQYALIGEPTRKYLWILCREPHMDEAIYNQLVEKATSEGYDVSKLHRTPQSD 162 (186)
Q Consensus 83 ~~v~~~~~~~l~~~~~~~~y~Vl~tDydY~yAiv~~~~~~~~wIlsR~~~ls~~~~~~~~~~~~~~G~d~~~l~~~~q~~ 162 (186)
|+|+|. +++.++|||+++|+||+||||++++.+++|||||+|++++++++++++.++++|+|.++|+.++|.+
T Consensus 104 ~~v~f~-------~~~~~~Y~v~~~d~dY~~aiv~~~~~~~~wIlsR~p~l~~~~~~~~~~~~~~~G~d~~~l~~~~q~~ 176 (177)
T PRK10477 104 LKVSFF-------GPFYGGYNVIALDREYRHALVCGPDRDYLWILSRTPTISDEVKQQMLAVATREGFDVSKLIWVKQPG 176 (177)
T ss_pred EEEEec-------CCcccceEEEEEcCCCCEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHHHHHHcCCCHHHeEECCCCC
Confidence 999984 2446899999999999999999999999999999999999999999999999999999999999964
No 5
>PF00061 Lipocalin: Lipocalin / cytosolic fatty-acid binding protein family fatty acid-binding protein signature lipocalin signature; InterPro: IPR000566 Proteins which transport small hydrophobic molecules such as steroids, bilins, retinoids, and lipids share limited regions of sequence homology and a common tertiary structure architecture [, , , , ]. This is an eight stranded antiparallel beta-barrel with a repeated + 1 topology enclosing a internal ligand binding site [, ]. The name 'lipocalin' has been proposed [] for this protein family, but cytosolic fatty-acid binding proteins are also included. The sequences of most members of the family, the core or kernal lipocalins, are characterised by three short conserved stretches of residues, while others, the outlier lipocalin group, share only one or two of these [, ]. Proteins known to belong to this family include alpha-1-microglobulin (protein HC); alpha-1-acid glycoprotein (orosomucoid) []; aphrodisin; apolipoprotein D; beta-lactoglobulin; complement component C8 gamma chain []; crustacyanin []; epididymal-retinoic acid binding protein (E-RABP) []; insectacyanin; odorant-binding protein (OBP); human pregnancy-associated endometrial alpha-2 globulin; probasin (PB), a rat prostatic protein; prostaglandin D synthase (5.3.99.2 from EC) []; purpurin; Von Ebner's gland protein (VEGP) []; and lizard epididymal secretory protein IV (LESP IV) [].; GO: 0005488 binding; PDB: 1I05_A 1MUP_A 2LB6_A 1I04_A 1I06_A 1DC9_A 1URE_A 1AEL_A 1T8V_A 1ICM_A ....
Probab=99.79 E-value=4.3e-19 Score=131.22 Aligned_cols=132 Identities=25% Similarity=0.377 Sum_probs=107.6
Q ss_pred ceeeEEEEEeC-----CCCCCCCCcceEEEEEECCCCcEEEEEEEEeCCceeeEEEEEEEcCCCCCcceEEEEEeCCCCC
Q 029869 19 MGRWYEIASFP-----SRNQPKNGADTRATYTLNEDGTVHVRNETWSDGKRGSIEGTAYKADPKSDEAKLKVKFYVPPFF 93 (186)
Q Consensus 19 ~G~WYeia~~~-----~~~~~~~~~c~~~~yt~~~~g~i~v~~~~~~~g~~~~~~g~a~~~~~~~~~g~~~v~~~~~~~l 93 (186)
+|+||+|+... ..+. ....|....+++..++.+.+......+|.|......+...+ .+|+|.+.|..
T Consensus 1 ~G~Wy~v~~as~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~---~~g~~~~~~~~---- 72 (144)
T PF00061_consen 1 AGKWYEVALASDCPEFEEEK-KELKCFPVVIKPLANGNLPVTFTSKRGGQCVTITVTFKKTE---EPGKFTVEFSE---- 72 (144)
T ss_dssp SEEEEEEEEEESSGGHHHHH-HHTTEEEEEEEEHHTTEEEEEEEEEETTEEEEEEEEEEEEE---ETTEEEEEEEE----
T ss_pred CceeEEEEEEeCCcchhhhc-cccccEEEEEEeecCCCeEEEEEEecCCEEEEEEEeEEecc---cCCccceeeec----
Confidence 59999999874 1221 12589999999877888999877777777988877776654 47999999742
Q ss_pred CcccccceEEEEEEeCCCcEEEeecC------CceEEEEEecCCCCCHHHHHHHHHHHHhcCCCCCCeEEcCCC
Q 029869 94 PIIPVVGNYWVLYIDDNYQYALIGEP------TRKYLWILCREPHMDEAIYNQLVEKATSEGYDVSKLHRTPQS 161 (186)
Q Consensus 94 ~~~~~~~~y~Vl~tDydY~yAiv~~~------~~~~~wIlsR~~~ls~~~~~~~~~~~~~~G~d~~~l~~~~q~ 161 (186)
.+...+++|++|||+ +|||++.+ +...+|||+|++++++++++++.+.++++||+.++++.+.|.
T Consensus 73 --~~~~~~~~v~~tdy~-~yai~~~~~~~~g~~~~~~~l~~R~~~l~~~~~~~f~~~~~~~gi~~~~i~~~~~~ 143 (144)
T PF00061_consen 73 --YPGGNDFWVLDTDYD-NYAIVYSCKKDNGKHTIVAWLLSRTPELSPEALEKFKKFAKSLGIDEENIVRTFQR 143 (144)
T ss_dssp --STTEEEEEEEEEESS-TEEEEEEEEEETTEEEEEEEEEESSSEEEHHHHHHHHHHHHHTTETGGCEEEEEEE
T ss_pred --cccccceeeeccCCC-CEEEEEEEccCCCceEEEEEEEcCCCcCCHHHHHHHHHHHHhCCCCHHeEEECCCC
Confidence 123459999999999 99999864 345799999999999999999999999999999999998775
No 6
>PF07137 VDE: Violaxanthin de-epoxidase (VDE); InterPro: IPR010788 This family represents a conserved region approximately 350 residues long within plant violaxanthin de-epoxidase (VDE). In higher plants, violaxanthin de-epoxidase forms part of a conserved system that dissipates excess energy as heat in the light-harvesting complexes of photosystem II (PSII), thus protecting them from photo-inhibitory damage [].; GO: 0046422 violaxanthin de-epoxidase activity, 0055114 oxidation-reduction process, 0009507 chloroplast; PDB: 3CQN_B 3CQR_A.
Probab=99.68 E-value=2.3e-15 Score=115.25 Aligned_cols=151 Identities=18% Similarity=0.241 Sum_probs=96.3
Q ss_pred CccccCCCccccceeeEEEEEeCCCCCCCCCcceEEEEEECCCCcEEEE-EEEEe--CCceeeEEEEEE-EcCCCCCcce
Q 029869 7 MEVVRGLDIKRYMGRWYEIASFPSRNQPKNGADTRATYTLNEDGTVHVR-NETWS--DGKRGSIEGTAY-KADPKSDEAK 82 (186)
Q Consensus 7 v~~~~nFDl~ky~G~WYeia~~~~~~~~~~~~c~~~~yt~~~~g~i~v~-~~~~~--~g~~~~~~g~a~-~~~~~~~~g~ 82 (186)
...+++||++.|.|+||.++.....|. +..|+...|... .+.+... +..+. +|........-+ +.|+. .||.
T Consensus 28 ~~~v~~Fd~~~f~G~Wyit~GlNp~fD--~FdCQ~h~F~~~-~~kl~~~~~wRi~~pdggf~~r~~~q~fvqD~~-~Pg~ 103 (198)
T PF07137_consen 28 SVLVKSFDPKDFEGKWYITAGLNPTFD--TFDCQLHEFHTE-KDKLVGKINWRIPTPDGGFFTRSAVQRFVQDPS-QPGI 103 (198)
T ss_dssp GGS-S---GGGG-EEEEEEEESSTTTT--TTSEEEEEEEEE-TTEEEEEEEEEEE-TTS-EEEEEEEEEEEE-SS--TTE
T ss_pred hHhhccCCHhHcCceEEEecCCCCCcc--ccccccceeecC-CCeEEEEEEEEeecCCCCceeccceeEeeeCCC-CCce
Confidence 456899999999999999999877775 478999999984 4565432 33343 666543333333 34554 6899
Q ss_pred EEEEEeCCCCCCcccccceEEEEEEe----CCCcEEEeecC-------CceEEEEEecCCCCCHHHHHHHHHHHHhcCCC
Q 029869 83 LKVKFYVPPFFPIIPVVGNYWVLYID----DNYQYALIGEP-------TRKYLWILCREPHMDEAIYNQLVEKATSEGYD 151 (186)
Q Consensus 83 ~~v~~~~~~~l~~~~~~~~y~Vl~tD----ydY~yAiv~~~-------~~~~~wIlsR~~~ls~~~~~~~~~~~~~~G~d 151 (186)
|..+ ++.+|. +..+++||+.+ .+ +|.+||.. ....+.||+|+++|+++++.++.+.+++.|++
T Consensus 104 lyn~--dneyL~---yqddWyIl~~~~~~~~~-~~vfVyYrG~ndawdgYgGAvVYtrs~~lP~s~~p~l~~aa~k~G~d 177 (198)
T PF07137_consen 104 LYNH--DNEYLH---YQDDWYILGSKIEDKPD-DFVFVYYRGRNDAWDGYGGAVVYTRSPTLPESIVPELRRAAKKAGID 177 (198)
T ss_dssp EEE-----GGG----EEEEEEEEEEE-SSSTT--EEEEEEEEEEETTEEEEEEEEEESSSS--GGGHHHHHHHHHHTT--
T ss_pred EEec--CCeeEE---eeeeEEEEeecccCCCC-CEEEEEEccccccccccCceEEEeCCCCCChHHhHHHHHHHHHhCCC
Confidence 8744 445553 56799999863 45 79999763 24568899999999999999999999999999
Q ss_pred CCCeEEcCCCCCCCCc
Q 029869 152 VSKLHRTPQSDNPPEA 167 (186)
Q Consensus 152 ~~~l~~~~q~~c~~~~ 167 (186)
.++|..+++++|+.+|
T Consensus 178 ~~~F~~tDNtC~~~pp 193 (198)
T PF07137_consen 178 FSKFIRTDNTCGPEPP 193 (198)
T ss_dssp GGGSEE--STT-----
T ss_pred HHHeEEecCCCCCCcc
Confidence 9999999998876654
No 7
>PF03973 Triabin: Triabin; InterPro: IPR005657 This family contains saliva proteins from haematophagous insects that counteract vertebrate host haemostasis events such as coagulation, vasoconstriction and platelet aggregation []. These include: Triabin, a serine-protease inhibitor. It forms a non-covalent complex with thrombin at a molecular ratio of 1:1, and inhibits thrombin-induced platelet aggregation. Pallidipin, an anticollagen induced platelet aggregation factor also found in Triatoma pallidipennis salivary homogenates. Procalin, the major allergen of Triatoma protracta saliva. All members of this family belong to MEROPS proteinase inhibitor family I59, clan IZ. ; GO: 0005488 binding, 0030682 evasion or tolerance of host defense response; PDB: 3EBK_B 1AVG_I.
Probab=99.36 E-value=1.2e-11 Score=92.99 Aligned_cols=119 Identities=14% Similarity=0.247 Sum_probs=68.5
Q ss_pred CCCCCccccCCCccccc-eeeEEEEEeCCCCCCCCCcceEEEEEECCCCcEEEEEEEEe-CCc-eeeEEEEEEEcCCCCC
Q 029869 3 SKKEMEVVRGLDIKRYM-GRWYEIASFPSRNQPKNGADTRATYTLNEDGTVHVRNETWS-DGK-RGSIEGTAYKADPKSD 79 (186)
Q Consensus 3 ~~~~v~~~~nFDl~ky~-G~WYeia~~~~~~~~~~~~c~~~~yt~~~~g~i~v~~~~~~-~g~-~~~~~g~a~~~~~~~~ 79 (186)
.|...++|+|||.+||. |+||+........ ...|.....+.. +|...+. ..+. +|. ...+......... .
T Consensus 11 ~c~~~~~m~nFd~~kFF~g~WyvTH~k~~t~---~tvCr~y~t~~~-~G~~~~v-~~y~~~g~~~~~v~C~~~~~~~--~ 83 (148)
T PF03973_consen 11 KCQNYKAMSNFDPTKFFKGTWYVTHAKNGTS---STVCRKYKTSQK-DGKTKIV-GEYTFNGKKGYEVKCSCTKKSG--K 83 (148)
T ss_dssp TGGC--S-TT--HHHHCSCEEEEECCSSSGG---CCEEEEEEECTT-T--EEEE-EEEC-T-TS-TTEEEEEEEECT--T
T ss_pred cccCCCcccCCChHHccCccEEEEeccCCCC---CceeeEEEEEEc-CCcEEEE-EeeecccCcccEEEEEeccCcC--C
Confidence 56788999999999987 9999988654322 124544443333 5766655 2333 322 2344555544333 4
Q ss_pred cceEEEEEeCCCCCCcccccceEEEEEEeCCCcEEEeecC------CceEEEEEecCCC
Q 029869 80 EAKLKVKFYVPPFFPIIPVVGNYWVLYIDDNYQYALIGEP------TRKYLWILCREPH 132 (186)
Q Consensus 80 ~g~~~v~~~~~~~l~~~~~~~~y~Vl~tDydY~yAiv~~~------~~~~~wIlsR~~~ 132 (186)
.|+|.+.+....- ..+..++.||+|||+ +|||+|.| ..+.++||.|++.
T Consensus 84 ~g~~~f~C~~~~~---~~f~~~~sVi~TDY~-nYAl~YrC~~~~~~~~DN~lVL~R~~~ 138 (148)
T PF03973_consen 84 KGQFSFDCKSKNG---TNFQVDFSVIDTDYN-NYALVYRCVTFESGKEDNYLVLQRNKN 138 (148)
T ss_dssp CT-EEEEEECTT----GGCEEEEEEEEE-TT-SEEEEEEEEEESS---EEEEEEESS--
T ss_pred CccEEEEEEcCCC---cEEEEEEEEEEcCCC-CEEEEEEccCCCCcccccEEEEEcCCC
Confidence 6889988864321 235679999999999 99999864 3568999999986
No 8
>PLN02372 violaxanthin de-epoxidase
Probab=99.35 E-value=2.3e-11 Score=102.74 Aligned_cols=151 Identities=18% Similarity=0.230 Sum_probs=109.2
Q ss_pred ccccCCCccccceeeEEEEEeCCCCCCCCCcceEEEEEECCCCcEEEE-EEEEe--CCceeeEEEEEE-EcCCCCCcceE
Q 029869 8 EVVRGLDIKRYMGRWYEIASFPSRNQPKNGADTRATYTLNEDGTVHVR-NETWS--DGKRGSIEGTAY-KADPKSDEAKL 83 (186)
Q Consensus 8 ~~~~nFDl~ky~G~WYeia~~~~~~~~~~~~c~~~~yt~~~~g~i~v~-~~~~~--~g~~~~~~g~a~-~~~~~~~~g~~ 83 (186)
..+++||.+.|.|+||.++.....|. ...|+...|...+++.+... ++.++ +|........-. ..|+. .||.|
T Consensus 196 ~lv~~F~~~~f~GsWyivaGlNP~yD--~FdCQ~h~F~~~~~~kl~~nl~wRv~tpdGgF~~Rs~vq~fvqd~~-~P~il 272 (455)
T PLN02372 196 ALVQNFDTADFNGRWYITSGLNKTFD--TFDCQLHEFTAEDPDKLVGNLNWRINTPDGGFFTRSAVQRFVQDPN-QPGIL 272 (455)
T ss_pred HHhhccCccccCccEEEecCCCCCCC--cccccceeeecCCCCceEEeeEEEEecCCCceEeecceeeeeccCC-CCceE
Confidence 35789999999999999998776675 36899999997656665432 22232 666543333322 23554 68888
Q ss_pred EEEEeCCCCCCcccccceEEEEEEeCCC---cEEEeecCC-------ceEEEEEecCCCCCHHHHHHHHHHHHhcCCCCC
Q 029869 84 KVKFYVPPFFPIIPVVGNYWVLYIDDNY---QYALIGEPT-------RKYLWILCREPHMDEAIYNQLVEKATSEGYDVS 153 (186)
Q Consensus 84 ~v~~~~~~~l~~~~~~~~y~Vl~tDydY---~yAiv~~~~-------~~~~wIlsR~~~ls~~~~~~~~~~~~~~G~d~~ 153 (186)
..+ ++.+|. +..+++||+...+- +|.+||... +..+-+++|++.++++.+.++++.+++.|++.+
T Consensus 273 ~n~--~NeyLh---yqddWyIl~~k~~~~~~d~~lvYYrG~ndAwdgYgGAVvyTrs~~lP~~~~p~L~~Aa~kvG~df~ 347 (455)
T PLN02372 273 YNH--DNEYLH---YQDDWYILSSKIENKPDDYVFVYYRGRNDAWDGYGGAVVYTRSSTLPESIVPELEKAAKKVGRDFS 347 (455)
T ss_pred EcC--Ccceee---cccceEEeeccccCCCCCeEEEEecccccccccccceEEEecCCCCChhhhHHHHHHHHHcCCCHH
Confidence 633 445553 46688999886551 499998643 335669999999999999999999999999999
Q ss_pred CeEEcCCCCCCCCc
Q 029869 154 KLHRTPQSDNPPEA 167 (186)
Q Consensus 154 ~l~~~~q~~c~~~~ 167 (186)
.|..++++ |-+.|
T Consensus 348 ~F~~tDNs-Cgpep 360 (455)
T PLN02372 348 DFVRTDNT-CGPEP 360 (455)
T ss_pred HheeeCCC-CCCCc
Confidence 99999885 54443
No 9
>PF02087 Nitrophorin: Nitrophorin; InterPro: IPR002351 Nitrophorins are haemoproteins found in saliva of blood-feeding insects [, ]. Saliva of the blood-sucking bug Rhodnius prolixus (Triatomid bug) contains four homologous nitrophorins, designated NP1 to NP4 in order of their relative abundance in the glands []. As isolated, nitrophorins contain nitric oxide (NO) ligated to the ferric (FeIII) haem iron. Histamine, which is released by the host in response to tissue damage, is another nitrophorin ligand. Nitrophorins transport NO to the feeding site. Dilution, binding of histamine and increase in pH (from pH ~5 in salivary gland to pH ~7.4 in the host tissue) facilitate the release of NO into the tissue where it induces vasodilatation. The salivary nitrophorin from the hemipteran Cimex lectularius (Bed bug) has no sequence similarity to R. prolixus nitrophorins. It is suggested that the two classes of insect nitrophorins have arisen as a product of the convergent evolution []. 3-D structures of several nitrophorin complexes are known []. The nitrophorin structures reveal lipocalin-like eight-stranded beta-barrel, three alpha-helices and two disulphide bonds, with haem inserted into one end of the barrel. Members of the lipocalin family are known to bind a variety of small hydrophobic ligands, including biliverdin, in a similar fashion (see [] for review). The haem iron is ligated to His59. The position of His59 is restrained through water-mediated hydrogen bond to the carboxylate of Asp70. The His59-Fe bond is bent ~15 degrees out of the imidazole plane. Asp70 forms an unusual hydrogen bond with one of the haem propionates, suggesting the residue has an altered pKa. In NP1-histamine structure, the planes of His59 and histamine imidazole rings lie in an arrangement almost identical to that found in oxidised cytochrome b5. This entry represents the nitrophorin structural domain.; GO: 0051381 histamine binding, 0070026 nitric oxide binding; PDB: 1SXX_A 2OFM_X 1X8Q_A 3TGA_A 1SXU_A 1IKJ_A 1YWD_A 1X8N_A 3FLL_A 1X8O_A ....
Probab=99.10 E-value=6.4e-09 Score=78.22 Aligned_cols=153 Identities=14% Similarity=0.145 Sum_probs=85.0
Q ss_pred CCCccccCCCccccc-eeeEEEEEeCCCCCCCCCcceEEEEEECCCCcEEEEEEEEe-CCc-eeeEEEEEEEcCCCCCcc
Q 029869 5 KEMEVVRGLDIKRYM-GRWYEIASFPSRNQPKNGADTRATYTLNEDGTVHVRNETWS-DGK-RGSIEGTAYKADPKSDEA 81 (186)
Q Consensus 5 ~~v~~~~nFDl~ky~-G~WYeia~~~~~~~~~~~~c~~~~yt~~~~g~i~v~~~~~~-~g~-~~~~~g~a~~~~~~~~~g 81 (186)
.++.++.+||.++|. |.||++.......+...-.|.... .-.++|.++=....++ +++ ..+-.+.+.... +|
T Consensus 3 ~Ni~~kt~fdk~k~F~g~WYvThyld~~~q~t~~~ca~~~-~kt~~GkvKE~~~~ynp~~~~~~Y~is~~~l~s----~g 77 (178)
T PF02087_consen 3 RNIKPKTDFDKDKYFSGTWYVTHYLDTDPQVTDKYCACFA-PKTSNGKVKEALYHYNPKNKTYFYDISESKLES----NG 77 (178)
T ss_dssp SS----TT--HHHHTSSEEEEEEEEESSCCSSSSEEEEEE-EEEETTEEEEEEEEEETTTTEEEEEEEEEEEEE----TT
T ss_pred cCccccCCCCHHHccCceEEEEEEecCCCCcchhhhhhhc-cccCCCceEEEEEEecCCCceEEEEeeeeeccC----Cc
Confidence 468999999999966 799999976443343334676664 3446888874445555 333 233334443322 23
Q ss_pred -eEEEEEeC---CC--CCC-cccccceEEEEEEeCCCcEEEeecCC----ce---EEEEEecCCCCCHHHHHHHHHHHHh
Q 029869 82 -KLKVKFYV---PP--FFP-IIPVVGNYWVLYIDDNYQYALIGEPT----RK---YLWILCREPHMDEAIYNQLVEKATS 147 (186)
Q Consensus 82 -~~~v~~~~---~~--~l~-~~~~~~~y~Vl~tDydY~yAiv~~~~----~~---~~wIlsR~~~ls~~~~~~~~~~~~~ 147 (186)
++.-.|.. .. ..+ .....-...||+|| | +||+|+.|. .+ .--||+|+....+ -.++...|.+
T Consensus 78 ~KytAk~~~VdK~g~~~~~~~~~~sYt~tv~dtD-d-s~AvV~~C~~~~~~~l~~LYaVlnRn~~~~~--~~KVksal~~ 153 (178)
T PF02087_consen 78 FKYTAKFKTVDKDGKKIEEADEKNSYTITVLDTD-D-SYAVVHVCLHEGNKDLGDLYAVLNRNKNANP--NDKVKSALDK 153 (178)
T ss_dssp SEEEEEEEEE-TTS-EEE---TTEEEEEEEEEEE-S-SEEEEEEEEEETTEEEEEEEEEEESSTT------HHHHHHHHH
T ss_pred ceeeeeeeEecCCCCcccccccCceEEEEEEecC-C-CeeEEEEecccCcccceeeeeeeecCCCCCc--chhHHHHHhh
Confidence 55544421 00 000 00111233468999 5 799998753 22 3359999998664 5799999999
Q ss_pred cCCCCCCeEEcCCCCCCCC
Q 029869 148 EGYDVSKLHRTPQSDNPPE 166 (186)
Q Consensus 148 ~G~d~~~l~~~~q~~c~~~ 166 (186)
.|+-.++|+.+.|..|.+.
T Consensus 154 vglkL~df~~~k~~~C~YD 172 (178)
T PF02087_consen 154 VGLKLDDFTSTKDNKCKYD 172 (178)
T ss_dssp TT--GGGSEESTTST----
T ss_pred cceeehheeecccCCcccc
Confidence 9999999999999999875
No 10
>PF11032 ApoM: Apolipoprotein M (ApoM); InterPro: IPR022734 ApoM is a 25 kDa plasma protein associated with high-density lipoproteins (HDLs). ApoM is important in the formation of pre-ss-HDL and also in increasing cholesterol efflux from macrophage foam cells []. Lipoproteins consist of lipids solubilized by apolipoproteins. ApoM lacks an external amphipathic motif and is uniquely secreted to plasma without cleavage of its terminal signal peptide []. ; PDB: 2XKL_A 2WEX_A 2YG2_B 2WEW_A.
Probab=98.03 E-value=0.001 Score=51.71 Aligned_cols=143 Identities=16% Similarity=0.210 Sum_probs=68.4
Q ss_pred CCCCCCc--cccCCCcccc----ceeeEEEEEeC-CCCCCC---CCcceEEEEEECCCC-cEEEEEEEEe-CCceeeEEE
Q 029869 2 ASKKEME--VVRGLDIKRY----MGRWYEIASFP-SRNQPK---NGADTRATYTLNEDG-TVHVRNETWS-DGKRGSIEG 69 (186)
Q Consensus 2 ~~~~~v~--~~~nFDl~ky----~G~WYeia~~~-~~~~~~---~~~c~~~~yt~~~~g-~i~v~~~~~~-~g~~~~~~g 69 (186)
..||... +...+|-+.| +|+||-||... ..-... ..+.+..+++...+. ++.+...... +|.|....-
T Consensus 21 ~~C~~~~~l~~~~~d~~q~p~~~LGkW~fiAgas~~~~~L~~f~~vDs~~f~~~~~s~~~~l~l~~~iR~~~g~C~~~~~ 100 (186)
T PF11032_consen 21 YQCPEPAPLVTSGLDNTQFPSPLLGKWYFIAGASPHPESLATFKPVDSAWFNLSAGSDEETLNLTATIRMKNGKCVPRSW 100 (186)
T ss_dssp ---S---EEEEECCTCCCCCHCCSCEEEEEEEEESSGGGCGGGTTEEEEEEEEEE-SSTTEEEEEEEEEETTS-EEEEEE
T ss_pred cCCCCccccccccCCcccCCcccceeEEEEEEeCCCchHHhhhcceeeEEEEEEeCCCCCeEEeeeeecccCCeEEEeeE
Confidence 4577655 4678887766 99999999643 211111 123445566655544 6776543333 588865444
Q ss_pred EEEEcCCCCCcceEEEEEeCCCCCCcccccceEEEEEEe-CCCcEEEee--cCCceEEEEEecCCCCCHHHHHHHHHHHH
Q 029869 70 TAYKADPKSDEAKLKVKFYVPPFFPIIPVVGNYWVLYID-DNYQYALIG--EPTRKYLWILCREPHMDEAIYNQLVEKAT 146 (186)
Q Consensus 70 ~a~~~~~~~~~g~~~v~~~~~~~l~~~~~~~~y~Vl~tD-ydY~yAiv~--~~~~~~~wIlsR~~~ls~~~~~~~~~~~~ 146 (186)
+....... ..|. +.+. ....-..+.++ +| -.|+- ......+.+|||+|.++++.+++|++.++
T Consensus 101 ~y~l~~~s---~~l~--~eg~-------~~~~~~l~~tsCpD--Ciil~e~~~~~~rllLysR~~~~~~~~lEeFk~q~~ 166 (186)
T PF11032_consen 101 TYHLSEGS---TTLR--TEGR-------PDMRTELFSTSCPD--CIILKETGDSYQRLLLYSRSPKLEEEELEEFKAQTE 166 (186)
T ss_dssp EEEE-TTS---S-EE--ETTE-------EEEEEECCCCCSTT--EEEEEEEETTEEEEEEEESSSS--HHHHHHHHHHHH
T ss_pred EEEEecCC---ceEE--ecCC-------CcceeeEEecCCCC--EEEEEEcCCCceEEEEEeCCCCCCHHHHHHHHHhhh
Confidence 44333211 2222 2110 00000011122 22 11111 23444577999999999999999999999
Q ss_pred hcCCCCCCeEEcCCC
Q 029869 147 SEGYDVSKLHRTPQS 161 (186)
Q Consensus 147 ~~G~d~~~l~~~~q~ 161 (186)
=+|+. |..+|+.
T Consensus 167 Cl~~~---~l~~p~~ 178 (186)
T PF11032_consen 167 CLGFK---FLLTPRQ 178 (186)
T ss_dssp HTT-----EEE----
T ss_pred ccCcE---EEECccc
Confidence 99997 6666664
No 11
>PF00356 LacI: Bacterial regulatory proteins, lacI family; InterPro: IPR000843 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. One such family groups together a range of proteins, including ascG, ccpA, cytR, ebgR, fruR, galR, galS, lacI, malI, opnR, purF, rafR, rbtR and scrR [, ]. Within this family, the HTH motif is situated towards the N terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3KJX_C 1ZAY_A 1VPW_A 2PUA_A 1QQA_A 1PNR_A 1JFT_A 1QP4_A 2PUD_A 1JH9_A ....
Probab=71.48 E-value=2.2 Score=25.40 Aligned_cols=27 Identities=26% Similarity=0.437 Sum_probs=21.8
Q ss_pred EecCCCCCHHHHHHHHHHHHhcCCCCC
Q 029869 127 LCREPHMDEAIYNQLVEKATSEGYDVS 153 (186)
Q Consensus 127 lsR~~~ls~~~~~~~~~~~~~~G~d~~ 153 (186)
|...+.+++++.+++++.++++||-++
T Consensus 20 ln~~~~vs~~tr~rI~~~a~~lgY~pN 46 (46)
T PF00356_consen 20 LNGPPRVSEETRERILEAAEELGYRPN 46 (46)
T ss_dssp HTTCSSSTHHHHHHHHHHHHHHTB-SS
T ss_pred HhCCCCCCHHHHHHHHHHHHHHCCCCC
Confidence 344577999999999999999998653
No 12
>PF08247 ENOD40: ENOD40 protein; InterPro: IPR013186 The soybean early nodulin 40 (ENOD40) mRNA contains two short overlapping ORFs; in vitro translation yields two peptides of 12 and 24 amino acids []. The putative role of the ENOD40 genes has been in favour of organogenesis, such as induction of the cortical cell divisions that lead to initiation of nodule primordia, in developing lateral roots and embryonic tissues. This supports the hypothesis for a role of ENOD40 in lateral organ development [].
Probab=61.75 E-value=5.9 Score=16.67 Aligned_cols=10 Identities=50% Similarity=1.002 Sum_probs=7.9
Q ss_pred eeEEeeccCC
Q 029869 177 IWWIKSIFGK 186 (186)
Q Consensus 177 ~~~~~~~~~~ 186 (186)
+-|.|||-|.
T Consensus 3 l~wqksihgs 12 (12)
T PF08247_consen 3 LCWQKSIHGS 12 (12)
T ss_pred eeEeeeecCC
Confidence 5799999873
No 13
>PF10346 Con-6: Conidiation protein 6; InterPro: IPR018824 This entry represents a conserved region found in fungal conidiation-specific protein 6 []. This protein is expressed approximately 6 hours after the induction of development and is induced just prior to major constriction-chain growth [].
Probab=56.89 E-value=18 Score=20.47 Aligned_cols=21 Identities=24% Similarity=0.352 Sum_probs=18.5
Q ss_pred cCCCCCHHHHHHHHHHHHhcC
Q 029869 129 REPHMDEAIYNQLVEKATSEG 149 (186)
Q Consensus 129 R~~~ls~~~~~~~~~~~~~~G 149 (186)
.+|.+|++..+..+++|+++|
T Consensus 15 ~NPnvSeeaK~~A~~~Le~~g 35 (36)
T PF10346_consen 15 HNPNVSEEAKQHAREKLEEMG 35 (36)
T ss_pred cCCCcCHHHHHHHHHHHHHcc
Confidence 468899999999999999875
No 14
>PF10681 Rot1: Chaperone for protein-folding within the ER, fungal; InterPro: IPR019623 This conserved fungal family is an essential molecular chaperone in the endoplasmic reticulum. Molecular chaperones transiently interact with unfolded proteins to inhibit their self-aggregation and to support their folding and/or assembly. Rot1 is a general chaperone with some substrate specificity, its substrates being the structurally unrelated Kre5 Kre6 Big1 Atg22, which are type I, type II, and polytopic membrane proteins. The dependencies of each for Rot1 do not share similarities. However, their folding does require BiP, and one of these proteins was simultaneously associated with both Rot1 and BiP. In addition, Rot1 may cooperate with BiP/Kar2 in the folding of Kre6 [].
Probab=54.30 E-value=1.1e+02 Score=24.35 Aligned_cols=98 Identities=19% Similarity=0.397 Sum_probs=49.6
Q ss_pred eEEEEEe---CCCCCCCCCcceEE-------EEEECCCCcEEEEEEEE-eCCceeeEEEEEEEcCCCCCcceEEEEEeCC
Q 029869 22 WYEIASF---PSRNQPKNGADTRA-------TYTLNEDGTVHVRNETW-SDGKRGSIEGTAYKADPKSDEAKLKVKFYVP 90 (186)
Q Consensus 22 WYeia~~---~~~~~~~~~~c~~~-------~yt~~~~g~i~v~~~~~-~~g~~~~~~g~a~~~~~~~~~g~~~v~~~~~ 90 (186)
+||.|.+ ++.-. -.|.++ .|++.++|+|.+.- + .||+. -..||........-+|..
T Consensus 43 ~~EeA~Yr~~~Np~~---p~C~~a~l~wQHGtY~l~~nGsl~L~P--~~~DGrQ-------l~sdPC~~~~s~y~rYnq- 109 (212)
T PF10681_consen 43 YFEEAQYRVTSNPTN---PSCPTAVLIWQHGTYELNSNGSLTLTP--FAVDGRQ-------LVSDPCADDSSTYTRYNQ- 109 (212)
T ss_pred eeeEEEEEEccCCCC---CCCCceEEEEecceEEECCCCcEEEee--cCCCCce-------eccCCCCCCcccEEEEcc-
Confidence 6888864 33333 356543 78888899887642 3 26643 223443222222223321
Q ss_pred CCCCcccccceEEEEEEeC-CCcEEEe-ecC---CceEEEEEecCCC-CCHHHH
Q 029869 91 PFFPIIPVVGNYWVLYIDD-NYQYALI-GEP---TRKYLWILCREPH-MDEAIY 138 (186)
Q Consensus 91 ~~l~~~~~~~~y~Vl~tDy-dY~yAiv-~~~---~~~~~wIlsR~~~-ls~~~~ 138 (186)
+....-+-|.+|. .-.|.+. +.. ...-+|+..|.|. |+...+
T Consensus 110 ------~e~f~~~~v~~D~y~~~~~L~L~~fDGsp~~pmyL~y~pP~MLPT~tL 157 (212)
T PF10681_consen 110 ------TELFKSFDVYVDPYHGRYRLQLYQFDGSPMQPMYLAYRPPMMLPTQTL 157 (212)
T ss_pred ------eEEEEEEEEEEeCCCCeeEEEEEccCCCcCCcchhccCCcccCcCccc
Confidence 1112223345564 2135554 322 3557899999988 443433
No 15
>PF15060 PPDFL: Differentiation and proliferation regulator
Probab=52.71 E-value=8.7 Score=27.14 Aligned_cols=15 Identities=40% Similarity=1.059 Sum_probs=11.9
Q ss_pred CCCcceeEEeeccCC
Q 029869 172 QDTKGIWWIKSIFGK 186 (186)
Q Consensus 172 ~~~~~~~~~~~~~~~ 186 (186)
+-.-|-||++..|||
T Consensus 48 kad~g~WW~sfFF~k 62 (110)
T PF15060_consen 48 KADPGHWWASFFFGK 62 (110)
T ss_pred ccCCCcceEEeEecc
Confidence 334578999999997
No 16
>PF07215 DUF1419: Protein of unknown function (DUF1419); InterPro: IPR009862 This family consists of several bacterial proteins of around 110 residues in length. Members of this family seem to be specific to Agrobacterium species and to Rhizobium loti (Mesorhizobium loti). The function of this family is unknown.
Probab=44.97 E-value=16 Score=25.90 Aligned_cols=12 Identities=42% Similarity=1.088 Sum_probs=10.0
Q ss_pred cccceeeEEEEE
Q 029869 16 KRYMGRWYEIAS 27 (186)
Q Consensus 16 ~ky~G~WYeia~ 27 (186)
..|.|.|+||+.
T Consensus 39 ~ly~GeWFEI~e 50 (111)
T PF07215_consen 39 ALYAGEWFEITE 50 (111)
T ss_pred cccccccEEecc
Confidence 349999999984
No 17
>PF08092 Toxin_22: Magi peptide toxin family ; InterPro: IPR012627 This family consists of Magi peptide toxins (Magi 1, 2 and 5) isolated from the venom of Hexathelidae spider. These insecticidal peptide toxins bind to sodium channels and induce flaccid paralysis when injected into lepidopteran larvae. However, these peptides are not toxic to mice when injected intracranially at 20 pmol/g.; GO: 0019871 sodium channel inhibitor activity, 0005576 extracellular region
Probab=37.26 E-value=18 Score=20.59 Aligned_cols=20 Identities=30% Similarity=0.625 Sum_probs=12.4
Q ss_pred CCCCCcCCCCCCCcceeEEeecc
Q 029869 162 DNPPEAEESPQDTKGIWWIKSIF 184 (186)
Q Consensus 162 ~c~~~~~~~~~~~~~~~~~~~~~ 184 (186)
.|..+ |-.+ |+|-||.|+-+
T Consensus 14 CCs~l--eClk-ptgywWyk~~y 33 (38)
T PF08092_consen 14 CCSGL--ECLK-PTGYWWYKSYY 33 (38)
T ss_pred CCCCc--EEec-cEeeEEeccee
Confidence 44544 5444 45669999864
No 18
>TIGR03067 Planc_TIGR03067 Planctomycetes uncharacterized domain TIGR03067. This domain occurs in several species, mostly from the Planctomycetes division of the bacteria. It is expanded into a paralogous family of at least twenty-five members in Gemmata obscuriglobus UQM 2246. This family appears related to TIGR03066, which also is expanded into a large paralogous family in Gemmata obscuriglobus.
Probab=35.78 E-value=1.5e+02 Score=20.64 Aligned_cols=93 Identities=17% Similarity=0.243 Sum_probs=46.6
Q ss_pred CccccceeeEEEEEeCCCCCCCCCcceEEEEEECCCCcEEEEEEEEeCCceeeEEEEEEEcCCCCCcceEEEEEeCCCCC
Q 029869 14 DIKRYMGRWYEIASFPSRNQPKNGADTRATYTLNEDGTVHVRNETWSDGKRGSIEGTAYKADPKSDEAKLKVKFYVPPFF 93 (186)
Q Consensus 14 Dl~ky~G~WYeia~~~~~~~~~~~~c~~~~yt~~~~g~i~v~~~~~~~g~~~~~~g~a~~~~~~~~~g~~~v~~~~~~~l 93 (186)
||++++|+|-.++.-.+.-......-....+++..+ .+.+. .+......|... .|+.+.|-++.+.....
T Consensus 3 dl~~LqG~W~~v~~e~~G~~~~~~~~~~~~~~~~g~-~~~~~-----~~~~~~~~~~~~-Ld~~~~Pk~id~~~~~g--- 72 (107)
T TIGR03067 3 DLEKLQGTWKVVAAEKGGKAVPADKGDRLVWTFKGD-KLTVK-----DGEGDQGKGTFK-LDPAANPKTIDLTSPDG--- 72 (107)
T ss_pred hHHhhCcEEEEEEEEeCCCcCChhhhcceEEEEeCC-EEEEE-----cCCCcceeEEEE-ECCCCCccEEEEEccCC---
Confidence 789999999999965443221110111134444444 34442 222222234443 35555788888764211
Q ss_pred CcccccceEEEEEEeCCCcEEEeec
Q 029869 94 PIIPVVGNYWVLYIDDNYQYALIGE 118 (186)
Q Consensus 94 ~~~~~~~~y~Vl~tDydY~yAiv~~ 118 (186)
+. ....-.-|...|-| ..-|.++
T Consensus 73 ~~-~g~~~~gIY~l~gd-~L~vC~~ 95 (107)
T TIGR03067 73 PD-KGKTIKGIYKLDGD-TLTVCFS 95 (107)
T ss_pred CC-CCCEEEEEEEEcCC-EEEEEEC
Confidence 10 11224456677777 6655543
No 19
>PRK10727 DNA-binding transcriptional regulator GalR; Provisional
Probab=35.71 E-value=32 Score=28.45 Aligned_cols=29 Identities=17% Similarity=0.201 Sum_probs=25.1
Q ss_pred EEecCCCCCHHHHHHHHHHHHhcCCCCCC
Q 029869 126 ILCREPHMDEAIYNQLVEKATSEGYDVSK 154 (186)
Q Consensus 126 IlsR~~~ls~~~~~~~~~~~~~~G~d~~~ 154 (186)
+|..++.+++++++++++.++++||-++.
T Consensus 21 vLn~~~~Vs~~tr~rV~~~a~elgY~pn~ 49 (343)
T PRK10727 21 VINNSPKASEASRLAVHSAMESLSYHPNA 49 (343)
T ss_pred HhCCCCCCCHHHHHHHHHHHHHHCCCCCH
Confidence 45667789999999999999999998754
No 20
>PRK09492 treR trehalose repressor; Provisional
Probab=35.20 E-value=36 Score=27.66 Aligned_cols=28 Identities=18% Similarity=0.299 Sum_probs=24.8
Q ss_pred EEecCCCCCHHHHHHHHHHHHhcCCCCC
Q 029869 126 ILCREPHMDEAIYNQLVEKATSEGYDVS 153 (186)
Q Consensus 126 IlsR~~~ls~~~~~~~~~~~~~~G~d~~ 153 (186)
+|.+.+.+++++++++++.++++||-++
T Consensus 24 vLn~~~~vs~~tr~rV~~~a~elgY~pn 51 (315)
T PRK09492 24 VLNNESGVSEETRERVEAVINQHGFSPS 51 (315)
T ss_pred HhCCCCCCCHHHHHHHHHHHHHHCCCcC
Confidence 5677788999999999999999999775
No 21
>PF14794 DUF4479: Domain of unknown function (DUF4479); PDB: 3BU2_C.
Probab=34.69 E-value=41 Score=22.04 Aligned_cols=21 Identities=19% Similarity=0.335 Sum_probs=14.8
Q ss_pred CCCHHHHHHHHHHHHhcCCCC
Q 029869 132 HMDEAIYNQLVEKATSEGYDV 152 (186)
Q Consensus 132 ~ls~~~~~~~~~~~~~~G~d~ 152 (186)
.|+++.++.+.+.+.+.||+.
T Consensus 47 ~Lt~eqv~~LN~~l~~~Gf~~ 67 (73)
T PF14794_consen 47 FLTEEQVAKLNQALQKAGFDE 67 (73)
T ss_dssp ---HHHHHHHHHHHHHTT---
T ss_pred EcCHHHHHHHHHHHHHcCCCc
Confidence 489999999999999999974
No 22
>smart00354 HTH_LACI helix_turn _helix lactose operon repressor.
Probab=34.65 E-value=38 Score=21.52 Aligned_cols=28 Identities=14% Similarity=0.228 Sum_probs=22.7
Q ss_pred EecCCCCCHHHHHHHHHHHHhcCCCCCC
Q 029869 127 LCREPHMDEAIYNQLVEKATSEGYDVSK 154 (186)
Q Consensus 127 lsR~~~ls~~~~~~~~~~~~~~G~d~~~ 154 (186)
|.-.+.++++..+.+.+.++++|+.++.
T Consensus 21 ln~~~~v~~~t~~~i~~~~~~~gy~~~~ 48 (70)
T smart00354 21 LNGNGRVSEETREKVLAAMEELGYIPNR 48 (70)
T ss_pred HCCCCCCCHHHHHHHHHHHHHhCCCCCH
Confidence 3445668999999999999999997653
No 23
>PRK10703 DNA-binding transcriptional repressor PurR; Provisional
Probab=34.09 E-value=32 Score=28.36 Aligned_cols=29 Identities=14% Similarity=0.165 Sum_probs=24.6
Q ss_pred EEecCCCCCHHHHHHHHHHHHhcCCCCCC
Q 029869 126 ILCREPHMDEAIYNQLVEKATSEGYDVSK 154 (186)
Q Consensus 126 IlsR~~~ls~~~~~~~~~~~~~~G~d~~~ 154 (186)
+|...+.+|+++++++++.++++|+-++.
T Consensus 21 vLn~~~~vs~~tr~~V~~~a~elgY~pn~ 49 (341)
T PRK10703 21 VINKTRFVAEETRNAVWAAIKELHYSPSA 49 (341)
T ss_pred HHcCCCCCCHHHHHHHHHHHHHHCCCcCH
Confidence 35566789999999999999999998753
No 24
>PF01402 RHH_1: Ribbon-helix-helix protein, copG family; InterPro: IPR002145 CopG, also known as RepA, is responsible for the regulation of plasmid copy number. It binds to the repAB promoter and controls synthesis of the plasmid replication initiator protein RepB. Many bacterial transcription regulation proteins bind DNA through a 'helix-turn-helix' motif, nevertheless CopG displays a fully defined HTH-motif structure that is involved not in DNA-binding, but in the maintenance of the intrinsic dimeric functional structure and cooperativity [, ].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2BJ3_B 2BJ8_A 2BJ1_A 2BJ9_A 2BJ7_B 1EA4_L 2CPG_C 1B01_B 2BA3_A 2K9I_B ....
Probab=30.51 E-value=14 Score=20.43 Aligned_cols=23 Identities=30% Similarity=0.450 Sum_probs=19.3
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCe
Q 029869 133 MDEAIYNQLVEKATSEGYDVSKL 155 (186)
Q Consensus 133 ls~~~~~~~~~~~~~~G~d~~~l 155 (186)
++++..+.+.+.+++.|.+.+.+
T Consensus 6 l~~~~~~~l~~~a~~~g~s~s~~ 28 (39)
T PF01402_consen 6 LPDELYERLDELAKELGRSRSEL 28 (39)
T ss_dssp EEHHHHHHHHHHHHHHTSSHHHH
T ss_pred eCHHHHHHHHHHHHHHCcCHHHH
Confidence 68899999999999999876544
No 25
>PRK09526 lacI lac repressor; Reviewed
Probab=30.37 E-value=44 Score=27.46 Aligned_cols=29 Identities=10% Similarity=0.218 Sum_probs=24.8
Q ss_pred EEecCCCCCHHHHHHHHHHHHhcCCCCCC
Q 029869 126 ILCREPHMDEAIYNQLVEKATSEGYDVSK 154 (186)
Q Consensus 126 IlsR~~~ls~~~~~~~~~~~~~~G~d~~~ 154 (186)
+|...+.+++++++++++.++++||-++.
T Consensus 25 vLn~~~~vs~~tr~rV~~~a~elgY~pn~ 53 (342)
T PRK09526 25 VLNQASHVSAKTREKVEAAMAELNYVPNR 53 (342)
T ss_pred HhcCCCCCCHHHHHHHHHHHHHHCCCcCH
Confidence 45667789999999999999999997753
No 26
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=29.49 E-value=46 Score=27.14 Aligned_cols=40 Identities=20% Similarity=0.360 Sum_probs=31.3
Q ss_pred cEEEeecCCceEEEEE----ecCCC-CCHHHHHHHHHHHHhcCCC
Q 029869 112 QYALIGEPTRKYLWIL----CREPH-MDEAIYNQLVEKATSEGYD 151 (186)
Q Consensus 112 ~yAiv~~~~~~~~wIl----sR~~~-ls~~~~~~~~~~~~~~G~d 151 (186)
+-|+|=..+.+++||| +|+++ ++++.++++.+.|++.+||
T Consensus 71 ~QALIkDKr~~nL~lLPAsQtrdKdalt~E~v~~vv~eL~~~~fD 115 (272)
T COG2894 71 NQALIKDKRLENLFLLPASQTRDKDALTPEGVKKVVNELKAMDFD 115 (272)
T ss_pred hhHhhccccCCceEecccccccCcccCCHHHHHHHHHHHHhcCCC
Confidence 4466666778899998 56666 8899999999999986664
No 27
>PF11012 DUF2850: Protein of unknown function (DUF2850); InterPro: IPR021271 This family of proteins with unknown function appear to be restricted to Vibrionaceae.
Probab=29.44 E-value=1.5e+02 Score=19.81 Aligned_cols=38 Identities=32% Similarity=0.605 Sum_probs=22.6
Q ss_pred cceeeEEEEEeCCCCCCCCCcceEEEEEECCCCcE---EEEEEEEe-CCce
Q 029869 18 YMGRWYEIASFPSRNQPKNGADTRATYTLNEDGTV---HVRNETWS-DGKR 64 (186)
Q Consensus 18 y~G~WYeia~~~~~~~~~~~~c~~~~yt~~~~g~i---~v~~~~~~-~g~~ 64 (186)
..|+|-|+...|- ....++++++|.+ .+..+.+. ||+.
T Consensus 2 iYG~WvE~~va~Y---------a~e~~~l~~~GV~~ngrlV~T~F~fDG~~ 43 (79)
T PF11012_consen 2 IYGTWVEQGVAPY---------AAEEFTLNESGVFRNGRLVATSFEFDGKT 43 (79)
T ss_pred cceEEEECCCCCc---------cccEEEECCCcEEECCCEEeeEEEECCCE
Confidence 3599999886442 2345788887743 23334444 6654
No 28
>TIGR01481 ccpA catabolite control protein A. Catabolite control protein A is a LacI family global transcriptional regulator found in Gram-positive bacteria. CcpA is involved in repressing carbohydrate utilization genes [ex: alpha-amylase (amyE), acetyl-coenzyme A synthase (acsA)] and in activating genes involved in transporting excess carbon from the cell [ex: acetate kinase (ackA), alpha-acetolactate synthase (alsS)]. Additionally, disruption of CcpA in Bacillus megaterium, Staphylococcus xylosus, Lactobacillus casei and Lactocacillus pentosus also decreases growth rate, which suggests CcpA is involved in the regulation of other metabolic pathways.
Probab=29.29 E-value=44 Score=27.31 Aligned_cols=29 Identities=14% Similarity=0.275 Sum_probs=24.4
Q ss_pred EEecCCCCCHHHHHHHHHHHHhcCCCCCC
Q 029869 126 ILCREPHMDEAIYNQLVEKATSEGYDVSK 154 (186)
Q Consensus 126 IlsR~~~ls~~~~~~~~~~~~~~G~d~~~ 154 (186)
+|...+.+++++++++++.++++||-++.
T Consensus 21 vLn~~~~vs~~tr~rV~~~a~~lgY~pn~ 49 (329)
T TIGR01481 21 VVNGNPNVKPATRKKVLEVIKRLDYRPNA 49 (329)
T ss_pred HhCCCCCCCHHHHHHHHHHHHHHCCCCCH
Confidence 45566779999999999999999997753
No 29
>PRK10014 DNA-binding transcriptional repressor MalI; Provisional
Probab=29.19 E-value=55 Score=26.87 Aligned_cols=29 Identities=10% Similarity=0.201 Sum_probs=24.9
Q ss_pred EEecCCCCCHHHHHHHHHHHHhcCCCCCC
Q 029869 126 ILCREPHMDEAIYNQLVEKATSEGYDVSK 154 (186)
Q Consensus 126 IlsR~~~ls~~~~~~~~~~~~~~G~d~~~ 154 (186)
+|.+++.+++++.+++++.++++||-++.
T Consensus 26 ~Ln~~~~vs~~tr~~V~~~a~elgY~p~~ 54 (342)
T PRK10014 26 VLSGKGRISTATGERVNQAIEELGFVRNR 54 (342)
T ss_pred HHCCCCCCCHHHHHHHHHHHHHhCCCcCH
Confidence 35677889999999999999999998753
No 30
>PRK10423 transcriptional repressor RbsR; Provisional
Probab=28.99 E-value=44 Score=27.21 Aligned_cols=28 Identities=18% Similarity=0.251 Sum_probs=23.8
Q ss_pred EecCCCCCHHHHHHHHHHHHhcCCCCCC
Q 029869 127 LCREPHMDEAIYNQLVEKATSEGYDVSK 154 (186)
Q Consensus 127 lsR~~~ls~~~~~~~~~~~~~~G~d~~~ 154 (186)
|..++.+++++++++++.++++||-++.
T Consensus 19 Ln~~~~vs~~tr~rV~~~a~~lgY~pn~ 46 (327)
T PRK10423 19 INKDRFVSEAITAKVEAAIKELNYAPSA 46 (327)
T ss_pred hCCCCCCCHHHHHHHHHHHHHHCCCccH
Confidence 4455679999999999999999997754
No 31
>PF12992 DUF3876: Domain of unknown function, B. Theta Gene description (DUF3876); InterPro: IPR024452 This bacterial family of conserved proteins has no known function.
Probab=28.91 E-value=1.1e+02 Score=21.13 Aligned_cols=27 Identities=22% Similarity=0.498 Sum_probs=20.0
Q ss_pred CCCCCCCccccCCCccccceeeEEEEEeCC
Q 029869 1 MASKKEMEVVRGLDIKRYMGRWYEIASFPS 30 (186)
Q Consensus 1 ~~~~~~v~~~~nFDl~ky~G~WYeia~~~~ 30 (186)
|++|. ..+.|+++++.|.|=.+...|.
T Consensus 1 ~~~c~---~~~~~~l~~~~G~W~Sv~~~P~ 27 (95)
T PF12992_consen 1 MQSCE---ESNSFDLDKICGEWESVNGKPD 27 (95)
T ss_pred Ccccc---cccccchheeEEEeEccCCCCC
Confidence 45554 3468999999999977776554
No 32
>PRK10401 DNA-binding transcriptional regulator GalS; Provisional
Probab=28.66 E-value=43 Score=27.71 Aligned_cols=29 Identities=10% Similarity=0.235 Sum_probs=24.5
Q ss_pred EEecCCCCCHHHHHHHHHHHHhcCCCCCC
Q 029869 126 ILCREPHMDEAIYNQLVEKATSEGYDVSK 154 (186)
Q Consensus 126 IlsR~~~ls~~~~~~~~~~~~~~G~d~~~ 154 (186)
+|..++.+++++++++++.++++||-++.
T Consensus 21 vLn~~~~Vs~~tr~kV~~~a~elgY~pn~ 49 (346)
T PRK10401 21 VLNNSALVSADTREAVMKAVSELGYRPNA 49 (346)
T ss_pred HHCCCCCCCHHHHHHHHHHHHHHCCCCCH
Confidence 35566789999999999999999997653
No 33
>TIGR02802 Pal_lipo peptidoglycan-associated lipoprotein. Members of this protein are Pal (also called OprL), the Peptidoglycan-Associated Lipoprotein of the Tol-Pal system. The system appears to be involved both in the maintenance of outer membrane integrity and in the import of certain organic molecules as nutrients. Members of this family contain a hydrodrophobic lipoprotein signal sequence, a conserved N-terminal cleavage and modification site, a poorly conserved low-complexity region, together comprising about 65 amino acids, and a well-conserved C-terminal domain. The seed alignment for this model includes only the conserved C-terminal domain.
Probab=28.20 E-value=54 Score=22.26 Aligned_cols=37 Identities=14% Similarity=0.245 Sum_probs=29.0
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCCCeEEcCCCCCCCC
Q 029869 130 EPHMDEAIYNQLVEKATSEGYDVSKLHRTPQSDNPPE 166 (186)
Q Consensus 130 ~~~ls~~~~~~~~~~~~~~G~d~~~l~~~~q~~c~~~ 166 (186)
+..||...-+.+.+.|.+.|++.++|.....+...+.
T Consensus 49 N~~LS~~RA~~V~~~L~~~gi~~~ri~~~g~G~~~p~ 85 (104)
T TIGR02802 49 NLALGERRANAVKDYLQAKGVSASQIETVSYGEEKPA 85 (104)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHeEEEeecccCCC
Confidence 3456777777888999999999999988877765554
No 34
>PRK14987 gluconate operon transcriptional regulator; Provisional
Probab=27.95 E-value=58 Score=26.70 Aligned_cols=29 Identities=14% Similarity=0.230 Sum_probs=24.9
Q ss_pred EEecCCCCCHHHHHHHHHHHHhcCCCCCC
Q 029869 126 ILCREPHMDEAIYNQLVEKATSEGYDVSK 154 (186)
Q Consensus 126 IlsR~~~ls~~~~~~~~~~~~~~G~d~~~ 154 (186)
+|...+.+++++++++++.++++||-++.
T Consensus 25 vLn~~~~vs~~tr~rV~~~a~elgY~pn~ 53 (331)
T PRK14987 25 FLRNPEQVSVALRGKIAAALDELGYIPNR 53 (331)
T ss_pred hhCCCCCCCHHHHHHHHHHHHHhCCCccH
Confidence 56667789999999999999999997754
No 35
>COG1609 PurR Transcriptional regulators [Transcription]
Probab=27.78 E-value=48 Score=27.86 Aligned_cols=29 Identities=17% Similarity=0.327 Sum_probs=24.9
Q ss_pred EEecCCCCCHHHHHHHHHHHHhcCCCCCC
Q 029869 126 ILCREPHMDEAIYNQLVEKATSEGYDVSK 154 (186)
Q Consensus 126 IlsR~~~ls~~~~~~~~~~~~~~G~d~~~ 154 (186)
+|...+.+++++++++++.++++||-++.
T Consensus 20 vln~~~~Vs~eTr~kV~~a~~elgY~pN~ 48 (333)
T COG1609 20 VLNGSPYVSEETREKVLAAIKELGYRPNA 48 (333)
T ss_pred HHcCCCCCCHHHHHHHHHHHHHHCCCCCH
Confidence 45667789999999999999999998653
No 36
>COG4544 Uncharacterized conserved protein [Function unknown]
Probab=27.08 E-value=64 Score=26.27 Aligned_cols=31 Identities=29% Similarity=0.393 Sum_probs=22.2
Q ss_pred ceEEEEEecCCCCCHHHHHHHHHHHHhcCCCCCCeEEcC
Q 029869 121 RKYLWILCREPHMDEAIYNQLVEKATSEGYDVSKLHRTP 159 (186)
Q Consensus 121 ~~~~wIlsR~~~ls~~~~~~~~~~~~~~G~d~~~l~~~~ 159 (186)
..-+||+.|.--..+. |.++||++++|+++.
T Consensus 85 gpVvWi~tr~dlf~pa--------L~~~Gl~~~RlifVe 115 (260)
T COG4544 85 GPVVWILTREDLFPPA--------LAAFGLDPERLIFVE 115 (260)
T ss_pred CCEEEEEecccccchh--------HhhcCCChhhEEEEe
Confidence 4578999875433332 778899999988874
No 37
>cd01392 HTH_LacI Helix-turn-helix (HTH) DNA binding domain of the LacI family of transcriptional regulators. HTH-DNA binding domain of the LacI (lactose operon repressor) family of bacterial transcriptional regulators and their putative homologs found in plants. The LacI family has more than 500 members distributed among almost all bacterial species. The monomeric proteins of the LacI family contain common structural features that include a small DNA-binding domain with a helix-turn-helix motif in the N-terminus, a regulatory ligand-binding domain which exhibits the type I periplasmic binding protein fold in the C-terminus for oligomerization and for effector binding, and an approximately 18-amino acid linker connecting these two functional domains. In LacI-like transcriptional regulators, the ligands are monosaccharides including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars, with a few exceptions. When the C-terminal domain of the LacI family repre
Probab=26.54 E-value=50 Score=19.16 Aligned_cols=25 Identities=20% Similarity=0.412 Sum_probs=21.1
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCCC
Q 029869 130 EPHMDEAIYNQLVEKATSEGYDVSK 154 (186)
Q Consensus 130 ~~~ls~~~~~~~~~~~~~~G~d~~~ 154 (186)
.+.++++...++.+.++++|+.++.
T Consensus 21 ~~~vs~~~~~~i~~~~~~l~~~~~~ 45 (52)
T cd01392 21 KPRVSEETRERVLAAAEELGYRPNA 45 (52)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCCCH
Confidence 4468899999999999999997654
No 38
>TIGR02384 RelB_DinJ addiction module antitoxin, RelB/DinJ family. Plasmids may be maintained stably in bacterial populations through the action of addiction modules, in which a toxin and antidote are encoded in a cassette on the plasmid. In any daughter cell that lacks the plasmid, the toxin persists and is lethal after the antidote protein is depleted. Toxin/antitoxin pairs are also found on main chromosomes, and likely represent selfish DNA. Sequences in the seed for this alignment all were found adjacent to toxin genes. The resulting model appears to describe a narrower set of proteins than Pfam model pfam04221, although many in the scope of this model are not obviously paired with toxin proteins. Several toxin/antitoxin pairs may occur in a single species.
Probab=26.50 E-value=54 Score=21.91 Aligned_cols=23 Identities=17% Similarity=0.186 Sum_probs=19.2
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCC
Q 029869 132 HMDEAIYNQLVEKATSEGYDVSK 154 (186)
Q Consensus 132 ~ls~~~~~~~~~~~~~~G~d~~~ 154 (186)
.+++++++++.+.++++|++.+.
T Consensus 8 Rvd~~lK~~a~~i~~~lGl~~s~ 30 (83)
T TIGR02384 8 RIDEELKKEAYAVFEELGLTPST 30 (83)
T ss_pred eeCHHHHHHHHHHHHHhCCCHHH
Confidence 37888889999999999998754
No 39
>PRK11235 bifunctional antitoxin/transcriptional repressor RelB; Provisional
Probab=26.27 E-value=51 Score=22.05 Aligned_cols=22 Identities=14% Similarity=0.154 Sum_probs=19.1
Q ss_pred CCHHHHHHHHHHHHhcCCCCCC
Q 029869 133 MDEAIYNQLVEKATSEGYDVSK 154 (186)
Q Consensus 133 ls~~~~~~~~~~~~~~G~d~~~ 154 (186)
+++++++.+.+.++++|++.+.
T Consensus 8 iD~~lK~~A~~vl~~lGls~S~ 29 (80)
T PRK11235 8 VDDELKARAYAVLEKLGVTPSE 29 (80)
T ss_pred eCHHHHHHHHHHHHHhCCCHHH
Confidence 6788899999999999998764
No 40
>PF07409 GP46: Phage protein GP46; InterPro: IPR010877 This entry is represented by Bacteriophage Mu, Gp46. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=26.09 E-value=69 Score=22.98 Aligned_cols=27 Identities=26% Similarity=0.432 Sum_probs=17.1
Q ss_pred CCceEEEEEecCCCCCHHHHHHHHHHHH
Q 029869 119 PTRKYLWILCREPHMDEAIYNQLVEKAT 146 (186)
Q Consensus 119 ~~~~~~wIlsR~~~ls~~~~~~~~~~~~ 146 (186)
+-..-+|+|.|++..+. ++..+++.++
T Consensus 41 ~iGSRLwlL~R~K~t~~-v~~~A~~ya~ 67 (116)
T PF07409_consen 41 PIGSRLWLLRREKLTPR-VRRRAEDYAE 67 (116)
T ss_pred ccccceeEEEeecchHH-HHHHHHHHHH
Confidence 44556899999986544 5555554443
No 41
>PF12651 RHH_3: Ribbon-helix-helix domain
Probab=25.87 E-value=28 Score=20.29 Aligned_cols=25 Identities=32% Similarity=0.500 Sum_probs=20.9
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCCeE
Q 029869 132 HMDEAIYNQLVEKATSEGYDVSKLH 156 (186)
Q Consensus 132 ~ls~~~~~~~~~~~~~~G~d~~~l~ 156 (186)
.++++.++++.+.+++.|++.++++
T Consensus 8 ~l~~el~~~L~~ls~~t~i~~S~Ll 32 (44)
T PF12651_consen 8 SLDKELYEKLKELSEETGIPKSKLL 32 (44)
T ss_pred ecCHHHHHHHHHHHHHHCCCHHHHH
Confidence 4788999999999999999876653
No 42
>smart00733 Mterf Mitochondrial termination factor repeats. Human mitochondrial termination factor is a DNA-binding protein that acts as a transcription termination factor. Six repeats occur in human mTERF, that also are present in numerous plant proteins.
Probab=25.16 E-value=80 Score=15.43 Aligned_cols=18 Identities=22% Similarity=0.230 Sum_probs=11.9
Q ss_pred CHHHHHHHHHHHHhcCCC
Q 029869 134 DEAIYNQLVEKATSEGYD 151 (186)
Q Consensus 134 s~~~~~~~~~~~~~~G~d 151 (186)
+.+.++.-.+.++..|++
T Consensus 14 ~~~~l~~~~~~l~~~g~~ 31 (31)
T smart00733 14 SEKKLKPKVEFLKELGFS 31 (31)
T ss_pred cHHHhhHHHHHHHHcCCC
Confidence 455666666777777764
No 43
>PRK10339 DNA-binding transcriptional repressor EbgR; Provisional
Probab=24.97 E-value=72 Score=26.11 Aligned_cols=29 Identities=24% Similarity=0.417 Sum_probs=23.9
Q ss_pred EEecCCC--CCHHHHHHHHHHHHhcCCCCCC
Q 029869 126 ILCREPH--MDEAIYNQLVEKATSEGYDVSK 154 (186)
Q Consensus 126 IlsR~~~--ls~~~~~~~~~~~~~~G~d~~~ 154 (186)
+|...+. +++++++++++.++++||-++.
T Consensus 21 vln~~~~~~vs~~tr~rV~~~a~~lgY~pn~ 51 (327)
T PRK10339 21 VLNDDPTLNVKEETKHRILEIAEKLEYKTSS 51 (327)
T ss_pred hhcCCCCCCcCHHHHHHHHHHHHHhCCCCch
Confidence 4555553 8999999999999999997654
No 44
>COG3077 RelB DNA-damage-inducible protein J [DNA replication, recombination, and repair]
Probab=24.87 E-value=44 Score=22.82 Aligned_cols=23 Identities=13% Similarity=0.299 Sum_probs=20.0
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCC
Q 029869 132 HMDEAIYNQLVEKATSEGYDVSK 154 (186)
Q Consensus 132 ~ls~~~~~~~~~~~~~~G~d~~~ 154 (186)
.++++++++..+.|+++|++++.
T Consensus 10 RiD~~vK~eA~~Vl~~mGlt~S~ 32 (88)
T COG3077 10 RIDDEVKEEATAVLEEMGLTISD 32 (88)
T ss_pred eecHHHHHHHHHHHHHhCCCHHH
Confidence 36788999999999999999875
No 45
>PF04221 RelB: RelB antitoxin; InterPro: IPR007337 Plasmids may be maintained stably in bacterial populations through the action of addiction modules, in which a toxin and antidote are encoded in a cassette on the plasmid. In any daughter cell that lacks the plasmid, the toxin persists and is lethal after the antidote protein is depleted. Toxin/antitoxin pairs are also found on main chromosomes, and likely represent selfish DNA. Sequences in the seed for this alignment all were found adjacent to toxin genes. Several toxin/antitoxin pairs may occur in a single species. RelE and RelB form a toxin-antitoxin system; RelE represses translation, probably through binding ribosomes [, ]. RelB stably binds RelE, presumably deactivating it.; PDB: 2KC8_B 2K29_A.
Probab=23.73 E-value=39 Score=22.41 Aligned_cols=22 Identities=18% Similarity=0.246 Sum_probs=15.6
Q ss_pred CCHHHHHHHHHHHHhcCCCCCC
Q 029869 133 MDEAIYNQLVEKATSEGYDVSK 154 (186)
Q Consensus 133 ls~~~~~~~~~~~~~~G~d~~~ 154 (186)
+++++++++.+.|+++|++.+.
T Consensus 8 id~~lK~~a~~il~~~Glt~s~ 29 (83)
T PF04221_consen 8 IDEELKEEAEAILEELGLTLSD 29 (83)
T ss_dssp E-HHHHHHHHHHHHHTT--HHH
T ss_pred cCHHHHHHHHHHHHHcCCCHHH
Confidence 6788888899999999988754
No 46
>TIGR02417 fruct_sucro_rep D-fructose-responsive transcription factor. Members of this family belong the lacI helix-turn-helix family (pfam00356) of DNA-binding transcriptional regulators. All members are from the proteobacteria. Characterized members act as positive and negative transcriptional regulators of fructose and sucrose transport and metabolism. Sucrose is a disaccharide composed of fructose and glucose; D-fructose-1-phosphate rather than an intact sucrose moiety has been shown to act as the inducer.
Probab=23.12 E-value=66 Score=26.26 Aligned_cols=23 Identities=9% Similarity=0.317 Sum_probs=20.8
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCC
Q 029869 132 HMDEAIYNQLVEKATSEGYDVSK 154 (186)
Q Consensus 132 ~ls~~~~~~~~~~~~~~G~d~~~ 154 (186)
.+++++++++++.++++||-++.
T Consensus 28 ~vs~~tr~rV~~~a~~lgY~pn~ 50 (327)
T TIGR02417 28 RISQETVERVMAVVREQGYQPNI 50 (327)
T ss_pred ccCHHHHHHHHHHHHHhCCCCCH
Confidence 59999999999999999998754
No 47
>PF09652 Cas_VVA1548: Putative CRISPR-associated protein (Cas_VVA1548); InterPro: IPR013443 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a conserved region of about 95 amino acids found exclusively in species with CRISPR repeats. In all bacterial species that contain this entry, the genes encoding the proteins are in the midst of a cluster of cas genes.
Probab=21.86 E-value=83 Score=21.72 Aligned_cols=25 Identities=24% Similarity=0.626 Sum_probs=19.0
Q ss_pred EEEecCCCCCHHHHHHHHHHHHhcCCCCCCeEE
Q 029869 125 WILCREPHMDEAIYNQLVEKATSEGYDVSKLHR 157 (186)
Q Consensus 125 wIlsR~~~ls~~~~~~~~~~~~~~G~d~~~l~~ 157 (186)
|+.||.| -..+.++++|+..+.++.
T Consensus 1 ~fIsRH~--------GAieW~~~qg~~iD~~v~ 25 (93)
T PF09652_consen 1 WFISRHP--------GAIEWAKQQGIQIDHFVD 25 (93)
T ss_pred Ceeeecc--------cHHHHHHHhCCCcceeec
Confidence 6777776 456778888998888774
No 48
>TIGR02405 trehalos_R_Ecol trehalose operon repressor, proteobacterial. This family consists of repressors of the LacI family typically associated with trehalose utilization operons. Trehalose is imported as trehalose-6-phosphate and then hydrolyzed by alpha,alpha-phosphotrehalase to glucose and glucose-6-P. This family includes repressors mostly from Gammaproteobacteria and does not include the GntR family TreR of Bacillus subtilis
Probab=21.61 E-value=74 Score=25.86 Aligned_cols=29 Identities=21% Similarity=0.331 Sum_probs=24.3
Q ss_pred EEecCCCCCHHHHHHHHHHHHhcCCCCCC
Q 029869 126 ILCREPHMDEAIYNQLVEKATSEGYDVSK 154 (186)
Q Consensus 126 IlsR~~~ls~~~~~~~~~~~~~~G~d~~~ 154 (186)
+|.+.+.+++++.+++.+.++++||-++.
T Consensus 21 ~Ln~~~~vs~~tr~rV~~~a~~lgY~pn~ 49 (311)
T TIGR02405 21 VLNNEPKVSIETRERVEQVIQQSGFVPSK 49 (311)
T ss_pred HhCCCCCCCHHHHHHHHHHHHHHCCCcCH
Confidence 35566779999999999999999997753
No 49
>PF00691 OmpA: OmpA family; InterPro: IPR006665 This entry represents domain with a beta/alpha/beta/alpha-beta(2) structure found in the C-terminal region of many Gram-negative bacterial outer membrane proteins [], such as porin-like integral membrane proteins (such as ompA) [], small lipid-anchored proteins (such as pal) [], and MotB proton channels []. The N-terminal half is variable although some of the proteins in this group have the OmpA-like transmembrane domain IPR000498 from INTERPRO at the N terminus. OmpA from Escherichia coli is required for pathogenesis, and can interact with host receptor molecules []. MotB (and MotA) serves two functions in E. coli, the MotA(4)-MotB(2) complex attaches to the cell wall via MotB to form the stator of the flagellar motor, and the MotA-MotB complex couples the flow of ions across the cell membrane to movement of the rotor [].; GO: 0009279 cell outer membrane; PDB: 1OAP_A 2W8B_G 2HQS_C 4ERH_A 2ZF8_A 2ZOV_A 2ZVZ_B 2ZVY_A 3TD4_B 3TD5_D ....
Probab=21.26 E-value=86 Score=20.68 Aligned_cols=36 Identities=6% Similarity=0.152 Sum_probs=26.7
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCCCeEEcCCCCCCC
Q 029869 130 EPHMDEAIYNQLVEKATSEGYDVSKLHRTPQSDNPP 165 (186)
Q Consensus 130 ~~~ls~~~~~~~~~~~~~~G~d~~~l~~~~q~~c~~ 165 (186)
...|+...-+.+.+.|...|++.++|...-.+.-.+
T Consensus 48 n~~LS~~RA~~V~~~L~~~gi~~~ri~~~~~G~~~p 83 (97)
T PF00691_consen 48 NQELSQRRAEAVKQYLVENGIPPERISVVGYGESQP 83 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSSGGGEEEEEETTTSS
T ss_pred HhHHHHHHHHHHHHHHHHcCCChHhEEEEEEccCCc
Confidence 334666677788899999999999997766655333
No 50
>TIGR01911 HesB_rel_seleno HesB-like selenoprotein. This model represents a family of small proteins related to HesB and its close homologs, which are likely to be invovlved in iron-sulfur cluster assembly (See TIGR00049 and pfam01521). Several members are selenoproteins, with a TGA codon and Sec residue that aligns to the conserved Cys of the HesB domain. A variable Cys/Ser/Gly-rich C-terminal region is not included in the seed alignment and model.
Probab=21.04 E-value=1.4e+02 Score=20.24 Aligned_cols=34 Identities=9% Similarity=0.075 Sum_probs=25.0
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCCeEE-cCCCCCCC
Q 029869 132 HMDEAIYNQLVEKATSEGYDVSKLHR-TPQSDNPP 165 (186)
Q Consensus 132 ~ls~~~~~~~~~~~~~~G~d~~~l~~-~~q~~c~~ 165 (186)
++++.+.+++++.+++.+-....|+. +...+|.-
T Consensus 5 ~lT~~A~~~i~~ll~~~~~~~~~LRi~v~~gGCsG 39 (92)
T TIGR01911 5 AMSDDAYEEFKDFLKENDIDNDVIRIHFAGMGCMG 39 (92)
T ss_pred EECHHHHHHHHHHHHhCCCCCceEEEEEeCCCccC
Confidence 47888999999999887664334666 77778854
No 51
>TIGR03241 arg_catab_astB succinylarginine dihydrolase. Members of this family are succinylarginine dihydrolase (EC 3.5.3.23), the second of five enzymes in the arginine succinyltransferase (AST) pathway.
Probab=20.79 E-value=2.7e+02 Score=24.59 Aligned_cols=44 Identities=9% Similarity=0.064 Sum_probs=34.8
Q ss_pred CCceEEEEEecCC---------CCCHHHHHHHHHHHHhcCCCCCCeEEcCCCC
Q 029869 119 PTRKYLWILCREP---------HMDEAIYNQLVEKATSEGYDVSKLHRTPQSD 162 (186)
Q Consensus 119 ~~~~~~wIlsR~~---------~ls~~~~~~~~~~~~~~G~d~~~l~~~~q~~ 162 (186)
.....+++|+|+- -+..+.++.-++.++..|+++++-++..|+.
T Consensus 186 ~~GvelFVyGr~~~~~~~~p~rfPARQt~eAS~AVARlH~L~~~~~vf~qQnp 238 (443)
T TIGR03241 186 SPGVQFFVYGRSAFGRGPRPKRYPARQTLEASQAVARLHGLNPAQVVFAQQNP 238 (443)
T ss_pred CCceEEEEecccccCCCCCCCCCCchhHHHHHHHHHHHhCCCccceEEeccCH
Confidence 4456788888876 2345678888889999999999999998873
No 52
>PRK11303 DNA-binding transcriptional regulator FruR; Provisional
Probab=20.79 E-value=78 Score=25.79 Aligned_cols=23 Identities=4% Similarity=0.222 Sum_probs=20.6
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCC
Q 029869 132 HMDEAIYNQLVEKATSEGYDVSK 154 (186)
Q Consensus 132 ~ls~~~~~~~~~~~~~~G~d~~~ 154 (186)
.+++++++++++.++++||-++.
T Consensus 29 ~Vs~~tr~rV~~~a~elgY~pn~ 51 (328)
T PRK11303 29 RVSDKTVEKVMAVVREHNYHPNA 51 (328)
T ss_pred CcCHHHHHHHHHHHHHhCCCCCH
Confidence 59999999999999999997753
No 53
>PRK08561 rps15p 30S ribosomal protein S15P; Reviewed
Probab=20.58 E-value=80 Score=23.79 Aligned_cols=42 Identities=29% Similarity=0.297 Sum_probs=29.8
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCeEEcCCCCCCCCcCCCCCCCcceeEEeeccCC
Q 029869 133 MDEAIYNQLVEKATSEGYDVSKLHRTPQSDNPPEAEESPQDTKGIWWIKSIFGK 186 (186)
Q Consensus 133 ls~~~~~~~~~~~~~~G~d~~~l~~~~q~~c~~~~~~~~~~~~~~~~~~~~~~~ 186 (186)
++++-+++..-.+.+.|+++++|=.+ -+|.+||-=+|.+.|+
T Consensus 28 ~~~eeve~~I~~lakkG~~pSqIG~~------------LRD~~gip~Vk~vtG~ 69 (151)
T PRK08561 28 YSPEEIEELVVELAKQGYSPSMIGII------------LRDQYGIPDVKLITGK 69 (151)
T ss_pred CCHHHHHHHHHHHHHCCCCHHHhhhh------------HhhccCCCceeeeccc
Confidence 56777777777888889998886532 3555677667777664
No 54
>PF02662 FlpD: Methyl-viologen-reducing hydrogenase, delta subunit; InterPro: IPR003813 Methyl-viologen-reducing hydrogenase (MVH) is one of the enzymes involved in methanogenesis and coded in the mth-flp-mvh-mrt cluster of methane genes in Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) []. No specific functions have been assigned to the delta subunit.; GO: 0015948 methanogenesis, 0055114 oxidation-reduction process
Probab=20.55 E-value=1.2e+02 Score=21.80 Aligned_cols=25 Identities=12% Similarity=0.100 Sum_probs=20.5
Q ss_pred CHHHHHHHHHHHHhcCCCCCCeEEc
Q 029869 134 DEAIYNQLVEKATSEGYDVSKLHRT 158 (186)
Q Consensus 134 s~~~~~~~~~~~~~~G~d~~~l~~~ 158 (186)
....++.+++.|++.|++++++...
T Consensus 75 a~~Rv~~~k~~L~~~Gi~~eRv~~~ 99 (124)
T PF02662_consen 75 AEKRVERLKKLLEELGIEPERVRLY 99 (124)
T ss_pred HHHHHHHHHHHHHHcCCChhHeEEE
Confidence 3456778889999999999998764
No 55
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=20.21 E-value=2.1e+02 Score=26.58 Aligned_cols=39 Identities=26% Similarity=0.314 Sum_probs=32.0
Q ss_pred ceEEEEEecCCCCCHHHHHHHHHHHHhcCCCCCCeEEcCCC
Q 029869 121 RKYLWILCREPHMDEAIYNQLVEKATSEGYDVSKLHRTPQS 161 (186)
Q Consensus 121 ~~~~wIlsR~~~ls~~~~~~~~~~~~~~G~d~~~l~~~~q~ 161 (186)
...+||++-. ..+++.+.+++.+++.|++.++|++-+..
T Consensus 459 ~Svl~L~~~~--~~~~~~~~l~~la~~~Gv~~eRL~f~p~~ 497 (620)
T COG3914 459 NSVLLLKAGG--DDAEINARLRDLAEREGVDSERLRFLPPA 497 (620)
T ss_pred CcEEEEecCC--CcHHHHHHHHHHHHHcCCChhheeecCCC
Confidence 4567888654 57888999999999999999999986654
No 56
>PF10007 DUF2250: Uncharacterized protein conserved in archaea (DUF2250); InterPro: IPR019254 Members of this family of hypothetical archaeal proteins have no known function.
Probab=20.04 E-value=26 Score=24.08 Aligned_cols=33 Identities=15% Similarity=0.112 Sum_probs=28.6
Q ss_pred CCceEEEEEecCCCCCHHHHHHHHHHHHhcCCC
Q 029869 119 PTRKYLWILCREPHMDEAIYNQLVEKATSEGYD 151 (186)
Q Consensus 119 ~~~~~~wIlsR~~~ls~~~~~~~~~~~~~~G~d 151 (186)
.+-+++|.++|.-.++.+.+..+.+.|++.|+=
T Consensus 19 ~~~Dy~k~ia~~l~~~~~~v~~~l~~Le~~GLl 51 (92)
T PF10007_consen 19 AGPDYAKSIARRLKIPLEEVREALEKLEEMGLL 51 (92)
T ss_pred HCCCcHHHHHHHHCCCHHHHHHHHHHHHHCCCe
Confidence 456788899999899999999999999999983
Done!