BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029871
(186 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P54797|T10_MOUSE Ser/Thr-rich protein T10 in DGCR region OS=Mus musculus GN=T10 PE=2
SV=1
Length = 276
Score = 68.9 bits (167), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/192 (27%), Positives = 92/192 (47%), Gaps = 23/192 (11%)
Query: 4 SHFFTSNVSKKKPLDFAEEILTEADQYNGFNLVIVNIHSKS---MVYVTNRSEGGKSIAT 60
SHF TS++ L + +++ TE YNGFN++ ++ + + Y NR E + T
Sbjct: 93 SHFLTSDMDS---LSYLKKVSTEGHLYNGFNIIAADLSTSKGDVVCYYGNRGEPEPIVLT 149
Query: 61 EVSPGIHVLTNALLDSPWPKAQRLGHAFKELMDKYGEGELQMKEMADELMMDTTKDDEGL 120
PG + L+NALL++PW ++L + M+ + E K++ ++D ++E
Sbjct: 150 ---PGTYGLSNALLETPW---KKLCFGKQLFMEAVEQSEALPKDVLVTQLLDVLNNEEAQ 203
Query: 121 LPHIYPPETESH-------LSSIFIDTERPLGRYGTRSTSSLYVKSNGEVYFYERH-LEK 172
LP P E + + + YGTR+ + + V +NG V F ER L+K
Sbjct: 204 LPD---PAIEDQGQEYVQPILNKYAAVWCRCASYGTRTNTIILVDANGHVTFTERSMLDK 260
Query: 173 DLWKEQTVAYQI 184
D + +T Y+
Sbjct: 261 DTSRWETNTYEF 272
>sp|Q6ICL3|TNG2_HUMAN Transport and Golgi organization 2 homolog OS=Homo sapiens
GN=TANGO2 PE=2 SV=1
Length = 276
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/196 (28%), Positives = 94/196 (47%), Gaps = 27/196 (13%)
Query: 4 SHFFTSNVSKKKPLDFAEEILTEADQYNGFNLVIVNIHSKS---MVYVTNRSEGGKSIAT 60
+HF T++V L + +++ E YNGFNL+ ++ + + Y NR E + T
Sbjct: 93 THFLTTDVDS---LSYLKKVSMEGHLYNGFNLIAADLSTAKGDVICYYGNRGEPDPIVLT 149
Query: 61 EVSPGIHVLTNALLDSPWPKAQRLGHAFKELMDKYGEGELQMKEMADELMMDTTKDDEGL 120
PG + L+NALL++PW K F E +++ + K++ ++D ++E
Sbjct: 150 ---PGTYGLSNALLETPWRKLCFGKQLFLEAVER---SQALPKDVLIASLLDVLNNEEAQ 203
Query: 121 LPHIYPPETESH--------LSSIFIDTERPLGRYGTRSTSSLYVKSNGEVYFYERH-LE 171
LP P E LS R G YGTR+ + + V ++G V F ER ++
Sbjct: 204 LPD---PAIEDQGGEYVQPMLSKYAAVCVRCPG-YGTRTNTIILVDADGHVTFTERSMMD 259
Query: 172 KDL--WKEQTVAYQIE 185
KDL W+ +T + ++
Sbjct: 260 KDLSHWETRTYEFTLQ 275
>sp|Q29RZ5|TNG2_BOVIN Transport and Golgi organization 2 homolog OS=Bos taurus GN=TANGO2
PE=2 SV=1
Length = 276
Score = 58.2 bits (139), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 92/195 (47%), Gaps = 25/195 (12%)
Query: 4 SHFFTSNVSKKKPLDFAEEILTEADQYNGFNLVIVNIHSKS---MVYVTNRSEGGKSIAT 60
+ F TS++ L + +++ E YNGFNL+ ++ ++ + Y NR E +
Sbjct: 93 AQFLTSDMDS---LSYLKKVSAEGHLYNGFNLIAADLSAEKGDVICYYGNRGEREPVV-- 147
Query: 61 EVSPGIHVLTNALLDSPWPKAQRLGHAFKELMDKYGEGELQMKEMADELMMDTTKDDEGL 120
++PG + L+NALL++PW K F E +++ EL + +L+ +DE
Sbjct: 148 -LAPGTYGLSNALLETPWRKLCFGKQLFLEAVER--GRELPRDALVAQLLA-VLSNDEAQ 203
Query: 121 LPHIYPPETESH-------LSSIFIDTERPLGRYGTRSTSSLYVKSNGEVYFYERHL--- 170
LP P E+ + S + YGTR+++ + V ++G V F ER +
Sbjct: 204 LPD---PAIEAQGREYVRPILSKYAAVCVRCPDYGTRTSTVILVDADGHVTFTERSMLGS 260
Query: 171 EKDLWKEQTVAYQIE 185
+ W+ T ++++
Sbjct: 261 DPTRWETTTHEFRLQ 275
>sp|A4SER8|FOLD_PROVI Bifunctional protein FolD OS=Prosthecochloris vibrioformis (strain
DSM 265) GN=folD PE=3 SV=1
Length = 295
Score = 34.7 bits (78), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 61/159 (38%), Gaps = 26/159 (16%)
Query: 13 KKKPLDFAEEILTEADQYN-------GFNLVIVNIHSKSMVYVTNRSEGGKSIATEVSPG 65
KK L+ +E+ D+Y G ++IV S VYV N+++ K I S
Sbjct: 7 KKVSLELKDELKASVDRYRETTGKVPGLTVIIVGEDPASQVYVRNKAKTCKEIGMNSS-- 64
Query: 66 IHVLTNALLDSPWPKAQRLGHAFKELMDKYGEGEL-------QMKEMADELMMDTTKDDE 118
V+T + + P+ L +D G L Q+ E A L +D KD +
Sbjct: 65 --VIT---MPADTPEEHLLDTIASLNLDPAVHGILVQQPLPEQIDEFAVTLAIDPQKDVD 119
Query: 119 GLLPHIYPPETESHLSSIFIDTE-----RPLGRYGTRST 152
G P HL F+ LGRYG ++
Sbjct: 120 GFHPENLGRLVMGHLDKCFVSCTPYGILELLGRYGIETS 158
>sp|A1TNB1|SYE_ACIAC Glutamate--tRNA ligase OS=Acidovorax citrulli (strain AAC00-1)
GN=gltX PE=3 SV=1
Length = 478
Score = 34.7 bits (78), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Query: 50 NRSEGGKSIATEVSPGIHVLTNALLDSPWPKAQRLGHAFKELMDKYGEGELQMKEMA 106
N E K + V P I L++AL W KA + AFKE++ G L+M ++A
Sbjct: 391 NEEERAKHVVDAVKPAIAALSDALAQCAWDKAS-IAAAFKEVLAAQG---LKMPQLA 443
>sp|Q3B4E2|FOLD_PELLD Bifunctional protein FolD OS=Pelodictyon luteolum (strain DSM 273)
GN=folD PE=3 SV=2
Length = 295
Score = 34.7 bits (78), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 62/160 (38%), Gaps = 28/160 (17%)
Query: 13 KKKPLDFAEEILTEADQYN-------GFNLVIVNIHSKSMVYVTNRSEGGKSIAT----- 60
KK LD EE+ + Y G ++IV S VYV N+++ K +
Sbjct: 7 KKVSLDMKEELKASVESYRSITGKVPGLTVIIVGSDPASEVYVRNKAKTCKEVGMNSSVI 66
Query: 61 ---EVSPGIHVLTNALLDSPWPKAQRLGHAFKELMDKYGEGELQMKEMADELMMDTTKDD 117
E +P H+L ++DS G ++ + K Q+ E A L +D KD
Sbjct: 67 ELQEDTPEAHLLE--VIDSLNRDPAVHGILVQQPLPK------QIDEFAVTLAIDPAKDV 118
Query: 118 EGLLPHIYPPETESHLSSIFIDTE-----RPLGRYGTRST 152
+G P HL F+ +GRYG ++
Sbjct: 119 DGFHPENLGRLVMGHLDKCFVSCTPYGILELIGRYGIETS 158
>sp|A1BDI1|GATA_CHLPD Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Chlorobium
phaeobacteroides (strain DSM 266) GN=gatA PE=3 SV=1
Length = 476
Score = 34.3 bits (77), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
Query: 39 NIHSKSMVYVTNRSEG-GKSIATEVSPGIHVLTNALLDSPWPKAQRLGHAFKELMDKYGE 97
N + S +YV +R+EG GK + + G +VL+ D+ + KAQ++ F+ D+Y E
Sbjct: 333 NCDNLSAMYVNSRTEGFGKEVKRRIMLGTYVLSAGYYDTYYKKAQQVRRVFQ---DRYRE 389
Query: 98 G 98
Sbjct: 390 A 390
>sp|Q9JTI3|ILVC_NEIMA Ketol-acid reductoisomerase OS=Neisseria meningitidis serogroup A /
serotype 4A (strain Z2491) GN=ilvC PE=3 SV=1
Length = 337
Score = 33.9 bits (76), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 39/94 (41%), Gaps = 11/94 (11%)
Query: 40 IHSKSMVYVTNRSEGGKSIATEVSPGIHVLTNALLDSPWPKAQRLGHAFKELMDKYGEGE 99
I K++ + S+G A G++V+ S W KA+ GH K + + E +
Sbjct: 14 IKGKTVAIIGYGSQGHAHAANLKDSGVNVVIGLRQGSSWKKAEAAGHVVKTVAEATKEAD 73
Query: 100 LQMKEMADELMMDTTKDDEGLLPHIYPPETESHL 133
+ M + DE M P +Y E ++L
Sbjct: 74 VVMLLLPDETM-----------PAVYHAEVAANL 96
>sp|A1KUZ8|ILVC_NEIMF Ketol-acid reductoisomerase OS=Neisseria meningitidis serogroup C /
serotype 2a (strain ATCC 700532 / FAM18) GN=ilvC PE=3
SV=1
Length = 337
Score = 33.5 bits (75), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 39/94 (41%), Gaps = 11/94 (11%)
Query: 40 IHSKSMVYVTNRSEGGKSIATEVSPGIHVLTNALLDSPWPKAQRLGHAFKELMDKYGEGE 99
I K++ + S+G A G++V+ S W KA+ GH K + + E +
Sbjct: 14 IKGKTVAIIGYGSQGHAHAANLKDSGVNVVIGLRQGSSWKKAEAAGHVVKTVAEATKEAD 73
Query: 100 LQMKEMADELMMDTTKDDEGLLPHIYPPETESHL 133
+ M + DE M P +Y E ++L
Sbjct: 74 VVMLLLPDETM-----------PAVYHAEVTANL 96
>sp|Q9JYI2|ILVC_NEIMB Ketol-acid reductoisomerase OS=Neisseria meningitidis serogroup B
(strain MC58) GN=ilvC PE=3 SV=1
Length = 337
Score = 33.5 bits (75), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 39/94 (41%), Gaps = 11/94 (11%)
Query: 40 IHSKSMVYVTNRSEGGKSIATEVSPGIHVLTNALLDSPWPKAQRLGHAFKELMDKYGEGE 99
I K++ + S+G A G++V+ S W KA+ GH K + + E +
Sbjct: 14 IKGKTVAIIGYGSQGHAHAANLKDSGVNVVIGLRQGSSWKKAEAAGHVVKTVAEATKEAD 73
Query: 100 LQMKEMADELMMDTTKDDEGLLPHIYPPETESHL 133
+ M + DE M P +Y E ++L
Sbjct: 74 VVMLLLPDETM-----------PAVYHAEVTANL 96
>sp|A9M177|ILVC_NEIM0 Ketol-acid reductoisomerase OS=Neisseria meningitidis serogroup C
(strain 053442) GN=ilvC PE=3 SV=1
Length = 337
Score = 33.5 bits (75), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 39/94 (41%), Gaps = 11/94 (11%)
Query: 40 IHSKSMVYVTNRSEGGKSIATEVSPGIHVLTNALLDSPWPKAQRLGHAFKELMDKYGEGE 99
I K++ + S+G A G++V+ S W KA+ GH K + + E +
Sbjct: 14 IKGKTVAIIGYGSQGHAHAANLKDSGVNVVIGLRQGSSWKKAEAAGHVVKTVAEATKEAD 73
Query: 100 LQMKEMADELMMDTTKDDEGLLPHIYPPETESHL 133
+ M + DE M P +Y E ++L
Sbjct: 74 VVMLLLPDETM-----------PAVYHAEVTANL 96
>sp|Q5F7E5|ILVC_NEIG1 Ketol-acid reductoisomerase OS=Neisseria gonorrhoeae (strain ATCC
700825 / FA 1090) GN=ilvC PE=3 SV=1
Length = 337
Score = 33.1 bits (74), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 39/94 (41%), Gaps = 11/94 (11%)
Query: 40 IHSKSMVYVTNRSEGGKSIATEVSPGIHVLTNALLDSPWPKAQRLGHAFKELMDKYGEGE 99
I K++ + S+G A G++V+ S W KA+ GH K + + E +
Sbjct: 14 IKGKTVAIIGYGSQGHAHAANLKDSGVNVVIGLRHGSSWKKAEAAGHVVKTVAEATKEAD 73
Query: 100 LQMKEMADELMMDTTKDDEGLLPHIYPPETESHL 133
+ M + DE M P +Y E ++L
Sbjct: 74 VVMLLLPDETM-----------PAVYHAEVAANL 96
>sp|A5G949|SYC_GEOUR Cysteine--tRNA ligase OS=Geobacter uraniireducens (strain Rf4)
GN=cysS PE=3 SV=1
Length = 494
Score = 33.1 bits (74), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 43/104 (41%), Gaps = 23/104 (22%)
Query: 5 HFFTSNVSKKKPLDFAEEILTEADQYNGFNLVIVNIHSKSMVYVTNRSEGGKSIATEVSP 64
FF + + PLDF+++ LTEA+ G + + + +N + GG+ I
Sbjct: 290 RFFLLSAHYRSPLDFSDQNLTEAE--TGMERIYKALVAIDETLASNPATGGEEI------ 341
Query: 65 GIHVLTNALLDSPWPKAQRLGHAFKELMDKYGEGELQMKEMADE 108
A LG A +EL DK G L+ +E D+
Sbjct: 342 ---------------DASSLGEAERELFDKSGSLPLRFREAMDD 370
>sp|Q2KBT5|SYGB_RHIEC Glycine--tRNA ligase beta subunit OS=Rhizobium etli (strain CFN 42
/ ATCC 51251) GN=glyS PE=3 SV=1
Length = 704
Score = 32.3 bits (72), Expect = 1.6, Method: Composition-based stats.
Identities = 21/54 (38%), Positives = 27/54 (50%), Gaps = 9/54 (16%)
Query: 37 IVNIHSKSMVYVTNRSEGGKS---IATEVSPGIHVLTNALLDSPWPKAQRLGHA 87
+VN K YV S+ G++ I EV PGI + D PWPK+ R G A
Sbjct: 99 VVNDPKKGDFYVAVISKPGRATEEIVAEVMPGI------IRDFPWPKSMRWGKA 146
>sp|B3EFE2|GATA_CHLL2 Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Chlorobium
limicola (strain DSM 245 / NBRC 103803) GN=gatA PE=3
SV=1
Length = 474
Score = 32.0 bits (71), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 46 VYVTNRSEG-GKSIATEVSPGIHVLTNALLDSPWPKAQRLGHAFKELMDKYGEG 98
+YV +R+EG GK + + G +VL+ D+ + KAQ++ F+ D+Y E
Sbjct: 340 MYVNSRTEGFGKEVKRRIMLGTYVLSAGYYDTYYKKAQQVRRVFQ---DRYREA 390
>sp|B4SGR4|FOLD_PELPB Bifunctional protein FolD OS=Pelodictyon phaeoclathratiforme
(strain DSM 5477 / BU-1) GN=folD PE=3 SV=1
Length = 295
Score = 31.2 bits (69), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 63/183 (34%), Gaps = 55/183 (30%)
Query: 13 KKKPLDFAEEILTEADQYN-------GFNLVIVNIHSKSMVYVTNRSEGGKSIA------ 59
KK LD E+ D + G ++IV S VYV N+++ K I
Sbjct: 7 KKVSLDLKNELKASVDNFRSITGKVPGLTVIIVGQDPASQVYVRNKAKTCKEIGMISTVI 66
Query: 60 ------TE--VSPGIHVLTN------ALLDSPWPKAQRLGHAFKELMDKYGEGELQMKEM 105
TE + IH L N L+ P PK Q+ E
Sbjct: 67 EMADDTTEKHLIETIHKLNNDPTVHGILVQQPLPK--------------------QIDEF 106
Query: 106 ADELMMDTTKDDEGLLPHIYPPETESHLSSIFIDTE-----RPLGRYG--TRSTSSLYV- 157
A L +D +KD +G P HL F+ LGRY TR + V
Sbjct: 107 AVTLAIDPSKDVDGFHPENLGRLVMGHLDKCFVSCTPYGILELLGRYNIETRGKHCVVVG 166
Query: 158 KSN 160
+SN
Sbjct: 167 RSN 169
>sp|Q1MKQ6|SYGB_RHIL3 Glycine--tRNA ligase beta subunit OS=Rhizobium leguminosarum bv.
viciae (strain 3841) GN=glyS PE=3 SV=1
Length = 704
Score = 30.8 bits (68), Expect = 4.9, Method: Composition-based stats.
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 9/54 (16%)
Query: 37 IVNIHSKSMVYVTNRSEGGKS---IATEVSPGIHVLTNALLDSPWPKAQRLGHA 87
+V+ K YV S+ G++ I T+V PGI + D PWPK+ R G A
Sbjct: 99 VVSDPKKGDFYVAVISKPGRATEEIVTDVMPGI------IRDFPWPKSMRWGKA 146
>sp|B3QQF5|GATA_CHLP8 Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Chlorobaculum
parvum (strain NCIB 8327) GN=gatA PE=3 SV=1
Length = 481
Score = 30.4 bits (67), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 44 SMVYVTNRSEG-GKSIATEVSPGIHVLTNALLDSPWPKAQRLGHAFKE 90
S +YV +R+EG G + + G +VL+ D+ + KAQ++ F+E
Sbjct: 338 SSMYVNSRTEGFGAEVKRRIMLGTYVLSAGYYDTYYKKAQQVRRVFQE 385
>sp|B3PRI2|SYGB_RHIE6 Glycine--tRNA ligase beta subunit OS=Rhizobium etli (strain CIAT
652) GN=glyS PE=3 SV=1
Length = 704
Score = 30.4 bits (67), Expect = 7.4, Method: Composition-based stats.
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 9/54 (16%)
Query: 37 IVNIHSKSMVYVTNRSEGGKS---IATEVSPGIHVLTNALLDSPWPKAQRLGHA 87
+V+ K YV S+ G++ I EV PGI + D PWPK+ R G A
Sbjct: 99 VVSDPKKGDFYVAVISKPGRATEEIVAEVMPGI------IRDFPWPKSMRWGKA 146
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.132 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,861,943
Number of Sequences: 539616
Number of extensions: 2826309
Number of successful extensions: 5710
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 43
Number of HSP's that attempted gapping in prelim test: 5689
Number of HSP's gapped (non-prelim): 57
length of query: 186
length of database: 191,569,459
effective HSP length: 111
effective length of query: 75
effective length of database: 131,672,083
effective search space: 9875406225
effective search space used: 9875406225
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 57 (26.6 bits)