Query 029871
Match_columns 186
No_of_seqs 107 out of 520
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 04:58:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029871.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029871hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05742 NRDE: NRDE protein; 100.0 1.7E-42 3.7E-47 290.3 17.9 168 9-182 92-273 (273)
2 COG3332 Uncharacterized conser 100.0 8.3E-39 1.8E-43 254.7 14.8 154 3-171 91-249 (270)
3 KOG2342 Uncharacterized conser 100.0 4.5E-30 9.7E-35 209.8 15.4 179 5-186 89-279 (280)
4 PF03417 AAT: Acyl-coenzyme A: 85.2 18 0.00038 29.0 11.1 95 13-115 84-186 (225)
5 PF09695 YtfJ_HI0045: Bacteria 63.0 6.2 0.00014 30.7 2.3 22 146-167 120-141 (160)
6 COG3054 Predicted transcriptio 50.8 12 0.00027 29.0 2.1 22 147-168 143-164 (184)
7 PF03577 Peptidase_C69: Peptid 41.6 67 0.0015 28.6 5.6 60 10-72 124-187 (403)
8 cd08689 C2_fungal_Pkc1p C2 dom 34.6 69 0.0015 23.3 3.7 39 147-186 19-57 (109)
9 PLN00067 PsbP domain-containin 33.3 2.1E+02 0.0046 24.1 6.9 75 15-94 173-260 (263)
10 PF10055 DUF2292: Uncharacteri 33.1 67 0.0015 18.9 2.9 20 146-169 14-33 (38)
11 COG4337 Uncharacterized protei 32.1 1E+02 0.0022 24.2 4.5 32 134-170 151-182 (206)
12 PRK10344 DNA-binding transcrip 30.5 21 0.00045 25.2 0.5 18 67-84 31-52 (92)
13 PRK09539 tRNA-splicing endonuc 28.6 76 0.0017 23.6 3.2 23 148-170 96-119 (124)
14 PF08534 Redoxin: Redoxin; In 25.3 79 0.0017 22.9 2.9 21 150-170 114-134 (146)
15 COG2052 Uncharacterized protei 24.5 57 0.0012 22.3 1.7 19 146-165 47-65 (89)
16 PF10083 DUF2321: Uncharacteri 23.0 1.9E+02 0.0042 22.4 4.6 34 62-95 54-95 (158)
17 PF02375 JmjN: jmjN domain; I 22.7 68 0.0015 18.2 1.6 18 14-31 11-28 (34)
18 COG2077 Tpx Peroxiredoxin [Pos 21.6 1.1E+02 0.0023 23.8 2.9 23 146-168 126-148 (158)
19 PF13778 DUF4174: Domain of un 20.2 94 0.002 22.5 2.4 18 149-166 77-94 (118)
20 COG3423 Nlp Predicted transcri 20.1 41 0.00089 23.0 0.4 12 72-83 40-51 (82)
No 1
>PF05742 NRDE: NRDE protein; InterPro: IPR008551 This family is found in eukaryotes, prokaryotes and viruses and has no known function. P54797 from SWISSPROT has been found to be expressed during early embryogenesis in Mus sp [].
Probab=100.00 E-value=1.7e-42 Score=290.27 Aligned_cols=168 Identities=36% Similarity=0.636 Sum_probs=141.9
Q ss_pred ccCCCCChHHHHHHHHHhcCCCCceeEEEEEccC---CeEEEEecCCCCCCceeEEecCceEEEcCCCCCCCcHHHHHHH
Q 029871 9 SNVSKKKPLDFAEEILTEADQYNGFNLVIVNIHS---KSMVYVTNRSEGGKSIATEVSPGIHVLTNALLDSPWPKAQRLG 85 (186)
Q Consensus 9 ~L~s~~s~~~y~~~l~~~~~~y~gFNLvvgd~~~---~~~~y~sN~~~~~~~~~~~l~~Gv~glSN~~ld~pWpKv~~gk 85 (186)
+|.++.+|.+|++++..++++|+|||||+||+.. ..++|++|+....+..+..+.+|+|||||+.||+|||||.+|+
T Consensus 92 fL~~~~~~~~~~~~l~~~~~~y~gFnLv~~d~~~~~~~~~~~~sn~~~~~~~~~~~l~~g~hglSN~~ld~pWpKv~~gk 171 (273)
T PF05742_consen 92 FLTSNASPEEYLEELAKEAHDYNGFNLVVGDLSKTGGSELYYYSNRGDKDPIVIEELPPGVHGLSNSLLDTPWPKVERGK 171 (273)
T ss_pred hhccCccHHHHHHHHHHhcCccCCEEEEEEEcccCCcceEEEEEeccCCCCceeEEccCCceEEcCCCCCCCccchhHHH
Confidence 4566889999999999999999999999999972 3689999998864444568999999999999999999999999
Q ss_pred HHHHHHHHhhCCCCCCHHHHH---HHHhhcc-CCCCCCCCCCC-CCC-Cccc--cccceeeeCCCCCCccccceEEEEEE
Q 029871 86 HAFKELMDKYGEGELQMKEMA---DELMMDT-TKDDEGLLPHI-YPP-ETES--HLSSIFIDTERPLGRYGTRSTSSLYV 157 (186)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~l~---~~ll~d~-~~~~~~~lPdt-~~~-~~e~--~lssifI~~~~~~~~YGTRssTvIlV 157 (186)
+.|++++++.. +.+.++++ .++|+|. ..+++..+|++ ++. ++++ .||+|||..+ .|||||||||+|
T Consensus 172 ~~l~~~~~~~~--~~~~~~l~~~l~~~L~~~~~~~~d~~l~~~g~~~~~~~~~~~lssifi~~~----~YGTRssTvIlv 245 (273)
T PF05742_consen 172 QLLEEILEQSN--ESSEEELIEELFELLSDDTQCAPDEQLPDTGIGLPELERPINLSSIFIRGP----YYGTRSSTVILV 245 (273)
T ss_pred HHHHHHHhccc--CCCHHHHHHHHHHHhcCCCcCCChhHccccCCCcchhhhhcccccccccCC----CccCeeEEEEEE
Confidence 99999998643 23445554 4567666 45677788888 544 7777 8999999988 999999999999
Q ss_pred EeCCeEEEEEEEecC-C--cceEEEEEE
Q 029871 158 KSNGEVYFYERHLEK-D--LWKEQTVAY 182 (186)
Q Consensus 158 ~~~g~v~f~Er~~~~-~--~w~~~~~~F 182 (186)
+++|+|+|+||+|.. + +|++++|+|
T Consensus 246 d~~g~v~f~Er~~~~~~~~~w~~~~f~f 273 (273)
T PF05742_consen 246 DRDGKVTFIERTLDDSGASEWEEQRFEF 273 (273)
T ss_pred ecCCCEEEEEEEecCCCCccceeeEEeC
Confidence 999999999999943 3 699999998
No 2
>COG3332 Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=8.3e-39 Score=254.71 Aligned_cols=154 Identities=34% Similarity=0.546 Sum_probs=135.6
Q ss_pred ccccccccCCC-CChHHHHHHHHHhcCCCCceeEEEEEccCCeEEEEecCCCCCCceeEEecCceEEEcCCCCCCCcHHH
Q 029871 3 YSHFFTSNVSK-KKPLDFAEEILTEADQYNGFNLVIVNIHSKSMVYVTNRSEGGKSIATEVSPGIHVLTNALLDSPWPKA 81 (186)
Q Consensus 3 ~~~~~~~L~s~-~s~~~y~~~l~~~~~~y~gFNLvvgd~~~~~~~y~sN~~~~~~~~~~~l~~Gv~glSN~~ld~pWpKv 81 (186)
|+|||+ ++ .|+++|++++.+.++.|+||||++||.. .++|++||... .+.+.||+|||||+.+|+|||||
T Consensus 91 v~dfL~---~~~as~~~~l~qlk~~~g~ydGfNll~gd~~--~l~y~~nr~e~----~rkl~pgyy~lSNg~lds~W~Kv 161 (270)
T COG3332 91 VADFLS---IHKASFEDYLNQLKKRAGHYDGFNLLYGDRH--KLWYYVNRSET----PRKLLPGYYGLSNGFLDSPWPKV 161 (270)
T ss_pred HHHHHH---hcCCCHHHHHHHHHhhhccccceeeEeeehh--heeEecccccc----ccccCCceEEeccccccCccHHH
Confidence 345554 44 6899999999999999999999999996 78999999763 46899999999999999999999
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHH---HHHhhccCCCCCCCCCCC-CCCCccccccceeeeCCCCCCccccceEEEEEE
Q 029871 82 QRLGHAFKELMDKYGEGELQMKEMA---DELMMDTTKDDEGLLPHI-YPPETESHLSSIFIDTERPLGRYGTRSTSSLYV 157 (186)
Q Consensus 82 ~~gk~~~~~~~~~~~~~~~~~~~l~---~~ll~d~~~~~~~~lPdt-~~~~~e~~lssifI~~~~~~~~YGTRssTvIlV 157 (186)
.+.+..|++++.+..+. +.+.++ .+||+|...+++.++||| ++.+||+.||+|||+.| .||||+||||+|
T Consensus 162 ~~araal~~~l~e~~~~--d~e~ii~~~l~llad~~~~p~~qlPdtgv~~ewerlls~ifI~g~----~YGTRastVl~v 235 (270)
T COG3332 162 KKARAALAELLAENIEH--DEEKIISSCLQLLADSSLAPDGQLPDTGVGVEWERLLSTIFIPGP----YYGTRASTVLRV 235 (270)
T ss_pred HHHHHHHHHHHhccccC--cHHHHHHHHHHHHhccccCCccCCCcccccccHhhhheeeeecCC----CcccceeEEEEE
Confidence 99999999999875333 444444 467888889999999999 88999999999999999 999999999999
Q ss_pred EeCCeEEEEEEEec
Q 029871 158 KSNGEVYFYERHLE 171 (186)
Q Consensus 158 ~~~g~v~f~Er~~~ 171 (186)
.++|.++|+||.+.
T Consensus 236 ~~dgt~~fiEr~~~ 249 (270)
T COG3332 236 SKDGTVTFIERVFG 249 (270)
T ss_pred ecCCeeEEEEeecC
Confidence 99999999999993
No 3
>KOG2342 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.97 E-value=4.5e-30 Score=209.78 Aligned_cols=179 Identities=32% Similarity=0.451 Sum_probs=138.8
Q ss_pred ccccccCCCCChHHHHHHHHHhcCCCCceeEEEEEccCCeEEEEecCCCCC--CceeEEecCceEEEcCCCCCCCcHHHH
Q 029871 5 HFFTSNVSKKKPLDFAEEILTEADQYNGFNLVIVNIHSKSMVYVTNRSEGG--KSIATEVSPGIHVLTNALLDSPWPKAQ 82 (186)
Q Consensus 5 ~~~~~L~s~~s~~~y~~~l~~~~~~y~gFNLvvgd~~~~~~~y~sN~~~~~--~~~~~~l~~Gv~glSN~~ld~pWpKv~ 82 (186)
.||.+|+|..++.++++.+..++..|||||||++|+.+..|++++.....+ .++++++.+|+|.+||+++-.||-|+.
T Consensus 89 ~~le~l~S~~d~ak~~e~~~~~~~~~ngF~lvvadv~ss~m~~i~~p~~~dv~~v~v~~~~~~~hv~Sn~~p~~~~~ks~ 168 (280)
T KOG2342|consen 89 LFLEFLSSPEDFAKFFEGHYDEASKYNGFNLVVADVNSSSMVIISKPRNQDVDVVEVEPVGDGVHVLSNSPPYDPWLKSE 168 (280)
T ss_pred chhhhccCcchHHHHHHHHhhhhhccCceEEEEEEeccceEEEEecCCccccceEEEEecCCeeEEecCCCCCccccchh
Confidence 478889988888888889988999999999999999855566665544432 345677899999999999999999999
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHHHHhhccCCCCCCC-CCCCC------CCCccccccceeeeCCC-CCCccccceEEE
Q 029871 83 RLGHAFKELMDKYGEGELQMKEMADELMMDTTKDDEGL-LPHIY------PPETESHLSSIFIDTER-PLGRYGTRSTSS 154 (186)
Q Consensus 83 ~gk~~~~~~~~~~~~~~~~~~~l~~~ll~d~~~~~~~~-lPdt~------~~~~e~~lssifI~~~~-~~~~YGTRssTv 154 (186)
.|++.|++++.....+ +.+.+..+++. ..+.-... .+|++ .+..-..||+||+..|. +...|||||+|+
T Consensus 169 ~g~~~L~~~~l~~~~~--~ve~i~~~~~~-~a~~~a~~~m~d~v~~~~~~~~~~~~plssif~~d~~~~t~~YGTRs~ta 245 (280)
T KOG2342|consen 169 VGRRDLRELRLFTDEQ--SVEQINESLFE-PAKKIAEEFMYDTVQAQDGNVEIYVPPLSSIFFVDPEIGTRRYGTRSTTA 245 (280)
T ss_pred HHHHHHHHHHhcchhh--HHHHHhhhhhh-hhhhhhhhcCchhhhhhcCCCccccccccccceecCcccccccccceEEE
Confidence 9999999998754322 45666666665 32223323 33442 12334678999887763 245899999999
Q ss_pred EEEEeCCeEEEEEEEec--CCcceEEEEEEEecC
Q 029871 155 LYVKSNGEVYFYERHLE--KDLWKEQTVAYQIEK 186 (186)
Q Consensus 155 IlV~~~g~v~f~Er~~~--~~~w~~~~~~F~l~~ 186 (186)
|+|+++|+|+|+||+|+ ++.|.++.|.|.|++
T Consensus 246 lvVk~t~eV~f~ER~le~~~~~W~~~~f~F~i~~ 279 (280)
T KOG2342|consen 246 LVVKRTGEVTFFERYLEPFNDTWHDHDFAFKIIL 279 (280)
T ss_pred EEEecCCeEEEEeehhhhhcCccccCceEEEEec
Confidence 99999999999999994 699999999999864
No 4
>PF03417 AAT: Acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase This family belongs to family C45 of the peptidase classification.; InterPro: IPR005079 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C45 (clan PB(C)). The active site residue for members of this family and family T1 is C-terminal to the autolytic cleavage site. They represent a family of enzymes which catalyse the final step in penicillin biosynthesis []. ; GO: 0042318 penicillin biosynthetic process; PDB: 3GVZ_A 2X1D_D 2X1E_B 2X1C_A.
Probab=85.18 E-value=18 Score=28.95 Aligned_cols=95 Identities=17% Similarity=0.149 Sum_probs=51.1
Q ss_pred CCChHHHHHHHHHhcCCCCceeEEEEEccCCeEEEEecCCCCCCceeEEecCceEEEcCCCCCC--------CcHHHHHH
Q 029871 13 KKKPLDFAEEILTEADQYNGFNLVIVNIHSKSMVYVTNRSEGGKSIATEVSPGIHVLTNALLDS--------PWPKAQRL 84 (186)
Q Consensus 13 ~~s~~~y~~~l~~~~~~y~gFNLvvgd~~~~~~~y~sN~~~~~~~~~~~l~~Gv~glSN~~ld~--------pWpKv~~g 84 (186)
..|..+.++-|. +.....++|++++|.+.+.+.+....... .. ...=.+|...-+|..+.. +.+.-..=
T Consensus 84 ~~t~~eA~~~l~-~~~~~~~~n~~i~d~~g~~~~~E~~~~~~-~~-~~~~~~~~l~hTNH~~~~~~~~~~~~~~~~S~~R 160 (225)
T PF03417_consen 84 CRTVEEAIAILR-SAPRASSSNYLIADASGEAAVVEESPDGV-VA-VVRPGNGFLVHTNHFLSPELKAWEDRPTPSSLFR 160 (225)
T ss_dssp -SSHHHHHHCHH-CCTTCSSSEEEEEEETTEEEEEEEETTCE-EE-EEEETTCEEEE-SS-S-GGCTSSB-S--CHHHHH
T ss_pred CCCHHHHHHHHH-hcCcccceEEEEEecCCCEEEEEEecCCc-eE-EEEcCCCcEEEccCCCcccchhccCCCCCCcHhH
Confidence 556677766554 45778899999999874333344444321 01 111234899999987542 23444433
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHhhccCC
Q 029871 85 GHAFKELMDKYGEGELQMKEMADELMMDTTK 115 (186)
Q Consensus 85 k~~~~~~~~~~~~~~~~~~~l~~~ll~d~~~ 115 (186)
..+++++++... .. +.+.++|+|...
T Consensus 161 ~~r~~~ll~~~~----~~-~~~~~~l~D~~~ 186 (225)
T PF03417_consen 161 YARLEELLAAQN----GK-EDIKEILSDHED 186 (225)
T ss_dssp HHHHHHHHCCSS----SB-HHHHHHCT--TT
T ss_pred HHHHHHHHhccc----CH-HHHHHHhcCccC
Confidence 566777776532 22 456688987653
No 5
>PF09695 YtfJ_HI0045: Bacterial protein of unknown function (YtfJ_HI0045); InterPro: IPR006513 These are sequences from gammaproteobacteria that are related to the Escherichia coli protein, YtfJ.
Probab=62.96 E-value=6.2 Score=30.70 Aligned_cols=22 Identities=18% Similarity=0.383 Sum_probs=19.3
Q ss_pred ccccceEEEEEEEeCCeEEEEE
Q 029871 146 RYGTRSTSSLYVKSNGEVYFYE 167 (186)
Q Consensus 146 ~YGTRssTvIlV~~~g~v~f~E 167 (186)
.-+-.+|+||++|++|+|.|+=
T Consensus 120 ~L~~~~SaiiVlDK~G~V~F~k 141 (160)
T PF09695_consen 120 QLQEESSAIIVLDKQGKVQFVK 141 (160)
T ss_pred cCCCCCceEEEEcCCccEEEEE
Confidence 4677899999999999999974
No 6
>COG3054 Predicted transcriptional regulator [General function prediction only]
Probab=50.76 E-value=12 Score=29.04 Aligned_cols=22 Identities=18% Similarity=0.366 Sum_probs=18.6
Q ss_pred cccceEEEEEEEeCCeEEEEEE
Q 029871 147 YGTRSTSSLYVKSNGEVYFYER 168 (186)
Q Consensus 147 YGTRssTvIlV~~~g~v~f~Er 168 (186)
---.+|.||++|++|+|.|+-.
T Consensus 143 L~e~~SaivVlDk~G~Vkfvke 164 (184)
T COG3054 143 LKEESSAVVVLDKDGRVKFVKE 164 (184)
T ss_pred cccccceEEEEcCCCcEEEEec
Confidence 4457899999999999999854
No 7
>PF03577 Peptidase_C69: Peptidase family C69; InterPro: IPR005322 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of peptidases, belong to MEROPS peptidase family C69 (dipeptidase, clan PB). They are mainly dipeptidases [] and incude dipeptidase A from Lactobacillus helveticus. Comparative sequence and structural analysis, particularly to penicillin V acylase (MEROPS peptidase family C59) revealed a cysteine as the catalytic nucleophile as well as other conserved residues important for catalysis []. In general, C69 family is variable in sequence and exhibits great diversity in substrate specificity, to include enzymes such as choloyglycine hydrolases, acid ceramidases, isopenicillin N acyltransferases, and a subgroup of eukaryotic proteins with unclear function.; GO: 0016805 dipeptidase activity, 0006508 proteolysis
Probab=41.58 E-value=67 Score=28.61 Aligned_cols=60 Identities=17% Similarity=0.177 Sum_probs=40.8
Q ss_pred cCCCCChHHHH---HHHHHhcCCCCceeEEEEEccCCeEEEEecCCCCCCceeEEecCc-eEEEcCC
Q 029871 10 NVSKKKPLDFA---EEILTEADQYNGFNLVIVNIHSKSMVYVTNRSEGGKSIATEVSPG-IHVLTNA 72 (186)
Q Consensus 10 L~s~~s~~~y~---~~l~~~~~~y~gFNLvvgd~~~~~~~y~sN~~~~~~~~~~~l~~G-v~glSN~ 72 (186)
|+...|+.+-+ -+|..+-+.|.|..|+++|.+ +.||+--.+.. ..-.++++.+ +..++|.
T Consensus 124 Ler~~TAreaV~l~g~Lie~yG~~~g~~~~iaD~~--E~WvlE~~~G~-~W~A~rvpdd~~~v~~N~ 187 (403)
T PF03577_consen 124 LERAKTAREAVELMGDLIEEYGYYEGNSLTIADPN--EAWVLEILGGH-HWAAQRVPDDEVAVIANQ 187 (403)
T ss_pred ecccCCHHHHHHHHHHHHHHhCcCCcceEEEECCC--ceEEEEEcCCC-EEEEEEecCCeEEEeCCc
Confidence 45555666555 455567788899999999994 88988665432 3445677776 5556774
No 8
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=34.56 E-value=69 Score=23.35 Aligned_cols=39 Identities=18% Similarity=0.330 Sum_probs=23.9
Q ss_pred cccceEEEEEEEeCCeEEEEEEEecCCcceEEEEEEEecC
Q 029871 147 YGTRSTSSLYVKSNGEVYFYERHLEKDLWKEQTVAYQIEK 186 (186)
Q Consensus 147 YGTRssTvIlV~~~g~v~f~Er~~~~~~w~~~~~~F~l~~ 186 (186)
+..++=|.+.|.-++.+..-=|.=-++.|.+. |.|+++|
T Consensus 19 ~~~~~etyV~IKved~~kaRTr~srnd~WnE~-F~i~Vdk 57 (109)
T cd08689 19 FSKRPETYVSIKVEDVERARTKPSRNDRWNED-FEIPVEK 57 (109)
T ss_pred hccCCCcEEEEEECCEEEEeccCCCCCcccce-EEEEecC
Confidence 45555667777766643221111146899887 9999976
No 9
>PLN00067 PsbP domain-containing protein 6; Provisional
Probab=33.30 E-value=2.1e+02 Score=24.09 Aligned_cols=75 Identities=12% Similarity=0.247 Sum_probs=45.4
Q ss_pred ChHHHHHHHHHhcCCCCce---eEEEEEccC--CeEEEE----e---cCCCCCCceeEEecCc-eEEEcCCCCCCCcHHH
Q 029871 15 KPLDFAEEILTEADQYNGF---NLVIVNIHS--KSMVYV----T---NRSEGGKSIATEVSPG-IHVLTNALLDSPWPKA 81 (186)
Q Consensus 15 s~~~y~~~l~~~~~~y~gF---NLvvgd~~~--~~~~y~----s---N~~~~~~~~~~~l~~G-v~glSN~~ld~pWpKv 81 (186)
+|+++++.|...... ++| .||-+.... +..+|. + |.+.+ .+-.-.+..| +|.+.-+.-+..|+|+
T Consensus 173 sPeeVl~~Lg~~v~g-~~~~~~eLLeAs~re~dGktYY~~E~~tp~a~~gRH-nLataTV~~GkLYtf~asanEkRW~K~ 250 (263)
T PLN00067 173 SPEKLIASLGPFVTG-NSYDPDELLETSVEKIGDQTYYKYVLETPFALTGSH-NLAKATAKGNTVVLFVVSASDKQWQSS 250 (263)
T ss_pred CHHHHHHHhhHHhhc-CCCCCcceEEeeeEeeCCeEEEEEEEEecCCCCCce-EEEEEEEECCEEEEEEecCCHHHHHHH
Confidence 789999999776544 555 677665542 223331 1 22222 2212224556 7888888888999994
Q ss_pred HHHHHHHHHHHHh
Q 029871 82 QRLGHAFKELMDK 94 (186)
Q Consensus 82 ~~gk~~~~~~~~~ 94 (186)
++.|+.++++
T Consensus 251 ---k~~l~~V~dS 260 (263)
T PLN00067 251 ---EKTLKAILDS 260 (263)
T ss_pred ---HHHHHHHHHh
Confidence 5567777654
No 10
>PF10055 DUF2292: Uncharacterized small protein (DUF2292); InterPro: IPR018743 Members of this family of hypothetical bacterial proteins have no known function.
Probab=33.12 E-value=67 Score=18.86 Aligned_cols=20 Identities=30% Similarity=0.551 Sum_probs=15.9
Q ss_pred ccccceEEEEEEEeCCeEEEEEEE
Q 029871 146 RYGTRSTSSLYVKSNGEVYFYERH 169 (186)
Q Consensus 146 ~YGTRssTvIlV~~~g~v~f~Er~ 169 (186)
.||+ |.++=+||++.-+||+
T Consensus 14 ~yGs----V~iiiqdG~vvQIe~~ 33 (38)
T PF10055_consen 14 RYGS----VTIIIQDGRVVQIEKT 33 (38)
T ss_pred Ccce----EEEEEECCEEEEEEhh
Confidence 6774 6677789999999983
No 11
>COG4337 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.07 E-value=1e+02 Score=24.25 Aligned_cols=32 Identities=16% Similarity=0.345 Sum_probs=26.8
Q ss_pred cceeeeCCCCCCccccceEEEEEEEeCCeEEEEEEEe
Q 029871 134 SSIFIDTERPLGRYGTRSTSSLYVKSNGEVYFYERHL 170 (186)
Q Consensus 134 ssifI~~~~~~~~YGTRssTvIlV~~~g~v~f~Er~~ 170 (186)
.+|||... -.|.+--|+++|++|+++-+.++|
T Consensus 151 AAi~I~Gd-----~AtTtGNV~itdk~G~~TtVDKtW 182 (206)
T COG4337 151 AAIYIDGD-----LATTTGNVFITDKKGQETTVDKTW 182 (206)
T ss_pred eeEEEecc-----ccceeccEEEEcCCCceEEeecee
Confidence 47777643 567788899999999999999998
No 12
>PRK10344 DNA-binding transcriptional regulator Nlp; Provisional
Probab=30.55 E-value=21 Score=25.17 Aligned_cols=18 Identities=33% Similarity=0.822 Sum_probs=12.5
Q ss_pred EEEcCC----CCCCCcHHHHHH
Q 029871 67 HVLTNA----LLDSPWPKAQRL 84 (186)
Q Consensus 67 ~glSN~----~ld~pWpKv~~g 84 (186)
+|||++ .|+.||||.++.
T Consensus 31 ~Gls~~TL~nAL~rp~PKgEri 52 (92)
T PRK10344 31 NGLSSSTLANALSRPWPKGEMI 52 (92)
T ss_pred cCCChHHHHHHHcCCCchHHHH
Confidence 566654 466899997764
No 13
>PRK09539 tRNA-splicing endonuclease subunit beta; Reviewed
Probab=28.59 E-value=76 Score=23.65 Aligned_cols=23 Identities=22% Similarity=0.244 Sum_probs=18.2
Q ss_pred ccceEEEEE-EEeCCeEEEEEEEe
Q 029871 148 GTRSTSSLY-VKSNGEVYFYERHL 170 (186)
Q Consensus 148 GTRssTvIl-V~~~g~v~f~Er~~ 170 (186)
+.|-+-||+ ||++|.|+|+|-.+
T Consensus 96 svrK~lVLAVVD~egdVTYY~v~~ 119 (124)
T PRK09539 96 SMNLELYLAIVDKYGDVTYYTLSE 119 (124)
T ss_pred hccceeEEEEEcCCCcEEEEEEEE
Confidence 456667777 88899999999855
No 14
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=25.30 E-value=79 Score=22.92 Aligned_cols=21 Identities=10% Similarity=0.260 Sum_probs=17.4
Q ss_pred ceEEEEEEEeCCeEEEEEEEe
Q 029871 150 RSTSSLYVKSNGEVYFYERHL 170 (186)
Q Consensus 150 RssTvIlV~~~g~v~f~Er~~ 170 (186)
+.-+.++||++|+|.+...-.
T Consensus 114 ~~P~~~lId~~G~V~~~~~g~ 134 (146)
T PF08534_consen 114 GIPTTFLIDKDGKVVYRHVGP 134 (146)
T ss_dssp SSSEEEEEETTSBEEEEEESS
T ss_pred eecEEEEEECCCEEEEEEeCC
Confidence 466889999999999988744
No 15
>COG2052 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.52 E-value=57 Score=22.34 Aligned_cols=19 Identities=26% Similarity=0.565 Sum_probs=15.2
Q ss_pred ccccceEEEEEEEeCCeEEE
Q 029871 146 RYGTRSTSSLYVKSNGEVYF 165 (186)
Q Consensus 146 ~YGTRssTvIlV~~~g~v~f 165 (186)
.||-|+.+||+.|.+ ||.+
T Consensus 47 TYGRrTRavii~DS~-hvIL 65 (89)
T COG2052 47 TYGRRTRAVIITDSD-HVIL 65 (89)
T ss_pred ccCceeeEEEEecCC-cEEE
Confidence 799999999988866 4543
No 16
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=23.04 E-value=1.9e+02 Score=22.42 Aligned_cols=34 Identities=21% Similarity=0.251 Sum_probs=21.2
Q ss_pred ecCceEEE-cCCCCC-------CCcHHHHHHHHHHHHHHHhh
Q 029871 62 VSPGIHVL-TNALLD-------SPWPKAQRLGHAFKELMDKY 95 (186)
Q Consensus 62 l~~Gv~gl-SN~~ld-------~pWpKv~~gk~~~~~~~~~~ 95 (186)
..+|+.++ +|.... +|+|=+.+......+++++.
T Consensus 54 ~v~gv~~~g~~~~~PsYC~~CGkpyPWt~~~L~aa~el~ee~ 95 (158)
T PF10083_consen 54 HVEGVFGLGGHYEAPSYCHNCGKPYPWTENALEAANELIEED 95 (158)
T ss_pred ecCCeeeeCCCCCCChhHHhCCCCCchHHHHHHHHHHHHHHh
Confidence 35787777 443332 35666667777777777653
No 17
>PF02375 JmjN: jmjN domain; InterPro: IPR003349 Jumonji protein is required for neural tube formation in mice [].There is evidence of domain swapping within the jumonji family of transcription factors []. This domain is often associated with JmjC (see IPR003347 from INTERPRO).; PDB: 2XML_A 2W2I_C 3DXT_A 3DXU_A 2OX0_B 2OQ6_B 2WWJ_A 2Q8D_A 3PDQ_A 2YBK_A ....
Probab=22.71 E-value=68 Score=18.25 Aligned_cols=18 Identities=28% Similarity=0.687 Sum_probs=13.7
Q ss_pred CChHHHHHHHHHhcCCCC
Q 029871 14 KKPLDFAEEILTEADQYN 31 (186)
Q Consensus 14 ~s~~~y~~~l~~~~~~y~ 31 (186)
.+|..|++++.+.+.+|+
T Consensus 11 ~dp~~yi~~i~~~g~~~G 28 (34)
T PF02375_consen 11 KDPIKYISSIEPEGEKYG 28 (34)
T ss_dssp S-HHHHHHHHHHTTGGGS
T ss_pred hCHHHHHHHHHHHHHHCC
Confidence 368899999998777665
No 18
>COG2077 Tpx Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=21.62 E-value=1.1e+02 Score=23.82 Aligned_cols=23 Identities=22% Similarity=0.303 Sum_probs=20.0
Q ss_pred ccccceEEEEEEEeCCeEEEEEE
Q 029871 146 RYGTRSTSSLYVKSNGEVYFYER 168 (186)
Q Consensus 146 ~YGTRssTvIlV~~~g~v~f~Er 168 (186)
-=|--+.+|+++|.+|+|.|.|-
T Consensus 126 L~gLlARaV~V~De~g~V~y~el 148 (158)
T COG2077 126 LAGLLARAVFVLDENGKVTYSEL 148 (158)
T ss_pred ccCeeeeEEEEEcCCCcEEEEEc
Confidence 45677889999999999999985
No 19
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=20.24 E-value=94 Score=22.51 Aligned_cols=18 Identities=11% Similarity=0.209 Sum_probs=14.8
Q ss_pred cceEEEEEEEeCCeEEEE
Q 029871 149 TRSTSSLYVKSNGEVYFY 166 (186)
Q Consensus 149 TRssTvIlV~~~g~v~f~ 166 (186)
.+..++|||++||.+...
T Consensus 77 ~~~f~~vLiGKDG~vK~r 94 (118)
T PF13778_consen 77 PGGFTVVLIGKDGGVKLR 94 (118)
T ss_pred CCceEEEEEeCCCcEEEe
Confidence 566999999999987654
No 20
>COG3423 Nlp Predicted transcriptional regulator [Transcription]
Probab=20.09 E-value=41 Score=23.03 Aligned_cols=12 Identities=58% Similarity=1.290 Sum_probs=9.3
Q ss_pred CCCCCCcHHHHH
Q 029871 72 ALLDSPWPKAQR 83 (186)
Q Consensus 72 ~~ld~pWpKv~~ 83 (186)
..|+.||||-++
T Consensus 40 n~L~rp~pkgEr 51 (82)
T COG3423 40 NALDRPWPKGER 51 (82)
T ss_pred HHHcCCCchHHH
Confidence 367889999766
Done!