Query 029871
Match_columns 186
No_of_seqs 107 out of 520
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 07:32:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029871.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029871hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2k0m_A Uncharacterized protein 61.0 7.9 0.00027 26.9 3.4 71 76-161 12-85 (104)
2 3gvz_A Uncharacterized protein 56.0 80 0.0027 25.6 9.9 100 10-115 117-224 (299)
3 3cx5_F Cytochrome B-C1 complex 25.0 15 0.00052 27.0 0.0 22 1-22 4-25 (146)
4 1bm4_A Protein (moloney murine 23.2 16 0.00056 19.8 -0.1 20 14-33 13-32 (32)
5 3p7x_A Probable thiol peroxida 22.5 46 0.0016 23.6 2.2 20 151-170 129-148 (166)
6 1q2f_A PNC27; P53 protein, MDM 21.7 13 0.00044 20.3 -0.7 10 75-84 23-32 (32)
7 1o9a_B FNBB, fibronectin bindi 18.8 26 0.0009 18.9 0.1 7 74-80 28-34 (36)
8 3fes_A ATP-dependent CLP endop 17.2 2E+02 0.0067 20.0 4.7 43 70-112 1-43 (145)
9 3vne_A Membrane-associated pro 17.0 78 0.0027 24.2 2.4 24 146-170 172-195 (224)
10 2y4x_A PILP protein; biosynthe 16.3 2.5E+02 0.0087 18.6 4.8 32 152-184 60-92 (93)
No 1
>2k0m_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Rhodospirillum rubrum atcc 11170}
Probab=61.01 E-value=7.9 Score=26.93 Aligned_cols=71 Identities=13% Similarity=0.257 Sum_probs=43.6
Q ss_pred CCcHHHHHHHHHHHHHHHhhCCC-CCCH--HHHHHHHhhccCCCCCCCCCCCCCCCccccccceeeeCCCCCCccccceE
Q 029871 76 SPWPKAQRLGHAFKELMDKYGEG-ELQM--KEMADELMMDTTKDDEGLLPHIYPPETESHLSSIFIDTERPLGRYGTRST 152 (186)
Q Consensus 76 ~pWpKv~~gk~~~~~~~~~~~~~-~~~~--~~l~~~ll~d~~~~~~~~lPdt~~~~~e~~lssifI~~~~~~~~YGTRss 152 (186)
..|+....+...|..++.++... .++. ...+.+||.- .|+.. ...-..+..|.|... .+||||=
T Consensus 12 ~~F~s~~~~~~~~k~iL~~y~~g~~l~~~d~~~l~~lL~~--------HP~~~-~KiG~Gi~~i~V~~h----~~~srCF 78 (104)
T 2k0m_A 12 HEFARKADALAFMKVMLNRYRPGDIVSTVDGAFLVEALKR--------HPDAT-SKIGPGVRNFEVRSA----DYGTQCF 78 (104)
T ss_dssp EEESSHHHHHHHHHHHHHHSCTTEECCHHHHHHHHHHHHT--------STTHH-HHHTTCEEEEEEEES----SSSCEEE
T ss_pred EecCCHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHh--------CCcHH-HhcCCCcceEEEecC----CCCCcEE
Confidence 35888999999999999887533 2332 2456667752 23220 001123567888766 6798884
Q ss_pred EEEEEEeCC
Q 029871 153 SSLYVKSNG 161 (186)
Q Consensus 153 TvIlV~~~g 161 (186)
- +|..||
T Consensus 79 f--vvR~DG 85 (104)
T 2k0m_A 79 W--ILRTDG 85 (104)
T ss_dssp E--EEETTS
T ss_pred E--EEEeCC
Confidence 4 456677
No 2
>3gvz_A Uncharacterized protein CV2077; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.80A {Chromobacterium violaceum atcc 12472}
Probab=55.97 E-value=80 Score=25.56 Aligned_cols=100 Identities=15% Similarity=0.064 Sum_probs=56.8
Q ss_pred cCCCCChHHHHHHHHHhcCCCCceeEEEEEccCCeEEEEecCCCCCCceeEEecCceEEEcCCCCCCCc--------HHH
Q 029871 10 NVSKKKPLDFAEEILTEADQYNGFNLVIVNIHSKSMVYVTNRSEGGKSIATEVSPGIHVLTNALLDSPW--------PKA 81 (186)
Q Consensus 10 L~s~~s~~~y~~~l~~~~~~y~gFNLvvgd~~~~~~~y~sN~~~~~~~~~~~l~~Gv~glSN~~ld~pW--------pKv 81 (186)
|..-.|.+|.++.|.+....-.++|++++|.. +.+.+-... .. ...+..-..|+..-+|+.+...+ +.-
T Consensus 117 L~~~aTv~EAv~~L~~~~~~as~~h~~iaD~~-g~~~vE~~p-~g-~~~v~~~~~g~lvhTNHf~~~~~~~~~~~~~~~S 193 (299)
T 3gvz_A 117 LRDYGSLDEVASAADKLFAQARPVFLLLADAG-GLMQVEIGQ-HG-RYRLIRQQSGTLAHTNHYADTSLLDGAQTIGPSS 193 (299)
T ss_dssp HHHCCSHHHHHHTHHHHTTTSCSEEEEEEETT-EEEEEEECS-SS-CEEEEEESSEEEEECSSCSCGGGSSSCCCCCHHH
T ss_pred HhcCCCHHHHHHHHHhccCCccceEEEEEeCC-CcEEEEEcC-Cc-eEEEEECCCCEEEEcccccchhhccccCCcCCCc
Confidence 33445677777777744445679999999986 233322221 11 11122234678899999876443 222
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHhhccCC
Q 029871 82 QRLGHAFKELMDKYGEGELQMKEMADELMMDTTK 115 (186)
Q Consensus 82 ~~gk~~~~~~~~~~~~~~~~~~~l~~~ll~d~~~ 115 (186)
..=.+++++++++.. .++. +.+.++|+|...
T Consensus 194 ~~R~~rl~~lL~~~~--~~t~-~~~~~iL~D~~g 224 (299)
T 3gvz_A 194 QARLERIRFLLDQHP--AHTL-SEFERLSRDRHD 224 (299)
T ss_dssp HHHHHHHHHHHTTSS--SBCH-HHHHHHHTCCCS
T ss_pred HHHHHHHHHHHhhcC--CCCH-HHHHHHhCCCCC
Confidence 222445666666532 3345 446689987643
No 3
>3cx5_F Cytochrome B-C1 complex subunit 6; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: f.28.1.1 PDB: 3cxh_F* 1ezv_H* 1kb9_F* 1p84_F* 2ibz_H* 1kyo_F*
Probab=24.99 E-value=15 Score=27.05 Aligned_cols=22 Identities=14% Similarity=0.040 Sum_probs=0.0
Q ss_pred CcccccccccCCCCChHHHHHH
Q 029871 1 MGYSHFFTSNVSKKKPLDFAEE 22 (186)
Q Consensus 1 ~~~~~~~~~L~s~~s~~~y~~~ 22 (186)
||++|||+.|.+...|...++.
T Consensus 4 mg~~d~~~dl~~s~~~~~~~~~ 25 (146)
T 3cx5_F 4 ELVGEYWEQLKITVVPVVAAAE 25 (146)
T ss_dssp ----------------------
T ss_pred hhHHHHHHHHHHHcCchhhhhc
Confidence 8999999999988666555433
No 4
>1bm4_A Protein (moloney murine leukemia virus capsid); moloney murine leukemia virus capsid protein, momlv, MU-MLV, MHR, major homology region; NMR {Synthetic} SCOP: j.47.1.1
Probab=23.21 E-value=16 Score=19.82 Aligned_cols=20 Identities=20% Similarity=0.463 Sum_probs=14.9
Q ss_pred CChHHHHHHHHHhcCCCCce
Q 029871 14 KKPLDFAEEILTEADQYNGF 33 (186)
Q Consensus 14 ~s~~~y~~~l~~~~~~y~gF 33 (186)
+||..|++.|..--..|-+|
T Consensus 13 EsPs~FlerL~eayR~yTP~ 32 (32)
T 1bm4_A 13 ESPSAFLERLKEAYRRYTPY 32 (32)
T ss_dssp GHHHHHHHHHHHHHHHTSCC
T ss_pred CChHHHHHHHHHHHHhcCCC
Confidence 57999999998655555554
No 5
>3p7x_A Probable thiol peroxidase; thioredoxin fold, oxidoreductase; HET: PG4; 1.96A {Staphylococcus aureus} SCOP: c.47.1.0
Probab=22.52 E-value=46 Score=23.56 Aligned_cols=20 Identities=10% Similarity=0.194 Sum_probs=16.1
Q ss_pred eEEEEEEEeCCeEEEEEEEe
Q 029871 151 STSSLYVKSNGEVYFYERHL 170 (186)
Q Consensus 151 ssTvIlV~~~g~v~f~Er~~ 170 (186)
.-++++||++|++.+.....
T Consensus 129 ~p~~~liD~~G~i~~~~~~~ 148 (166)
T 3p7x_A 129 ARAVFVLDADNKVVYKEIVS 148 (166)
T ss_dssp CCEEEEECTTCBEEEEEECS
T ss_pred eeEEEEECCCCeEEEEEEcC
Confidence 46788999999999887643
No 6
>1q2f_A PNC27; P53 protein, MDM-2 binding domain, penetratin, antitumor, antitumor protein; NMR {Synthetic} SCOP: j.69.1.1 PDB: 1q2i_A
Probab=21.75 E-value=13 Score=20.27 Aligned_cols=10 Identities=40% Similarity=0.577 Sum_probs=7.2
Q ss_pred CCCcHHHHHH
Q 029871 75 DSPWPKAQRL 84 (186)
Q Consensus 75 d~pWpKv~~g 84 (186)
++.|.||.||
T Consensus 23 ~~~W~~~~~~ 32 (32)
T 1q2f_A 23 NQFWVKVQRG 32 (32)
T ss_dssp TTHHHHHHCC
T ss_pred CchHHHHhcc
Confidence 4568888875
No 7
>1o9a_B FNBB, fibronectin binding protein; cell adhesion/complex, HOST-pathogen protein complex, cell adhesion; NMR {Streptococcus dysgalactiae}
Probab=18.82 E-value=26 Score=18.90 Aligned_cols=7 Identities=57% Similarity=1.526 Sum_probs=5.5
Q ss_pred CCCCcHH
Q 029871 74 LDSPWPK 80 (186)
Q Consensus 74 ld~pWpK 80 (186)
+|..|||
T Consensus 28 fdnewpk 34 (36)
T 1o9a_B 28 FDNEWPK 34 (36)
T ss_dssp CCCCCSC
T ss_pred ccCcCCC
Confidence 5778997
No 8
>3fes_A ATP-dependent CLP endopeptidase; alpha-helical bundles, structural genomics, PSI-2, protein S initiative; HET: PG4 EPE; 1.82A {Clostridium difficile}
Probab=17.24 E-value=2e+02 Score=20.01 Aligned_cols=43 Identities=14% Similarity=0.078 Sum_probs=28.1
Q ss_pred cCCCCCCCcHHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHhhc
Q 029871 70 TNALLDSPWPKAQRLGHAFKELMDKYGEGELQMKEMADELMMD 112 (186)
Q Consensus 70 SN~~ld~pWpKv~~gk~~~~~~~~~~~~~~~~~~~l~~~ll~d 112 (186)
||..++.-=||+.+....-.+...+.+...+..+.++..||.+
T Consensus 1 ~~~~~~~~T~~a~~~l~~A~~~A~~~~~~~i~~eHLLlaLl~~ 43 (145)
T 3fes_A 1 SNANFNRFTQRAKKAIDLAFESAKSLGHNIVGSEHILLGLLRE 43 (145)
T ss_dssp ---CCCCBCHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred CCCcccccCHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHhC
Confidence 4555554447777777666666666666777788888888864
No 9
>3vne_A Membrane-associated protein VP24; interferon antagonist, STAT1, zaire, sudan VP35, karyopherin alpha, IFN response pathway, viral protei; 2.00A {Sudan ebolavirus} PDB: 3vnf_A 4d9o_A
Probab=16.99 E-value=78 Score=24.20 Aligned_cols=24 Identities=21% Similarity=0.246 Sum_probs=19.0
Q ss_pred ccccceEEEEEEEeCCeEEEEEEEe
Q 029871 146 RYGTRSTSSLYVKSNGEVYFYERHL 170 (186)
Q Consensus 146 ~YGTRssTvIlV~~~g~v~f~Er~~ 170 (186)
.-||+|+||| +.+.+-...+|..-
T Consensus 172 EIg~~~~tII-ItRtNMGfLVE~qe 195 (224)
T 3vne_A 172 EIGTPSYAII-ITRTNMGYLVEVQE 195 (224)
T ss_dssp EEECSSCEEE-EEECSSEEEEEEEC
T ss_pred EEcCCccEEE-EEeccceEEEEEec
Confidence 6899999998 56666688888765
No 10
>2y4x_A PILP protein; biosynthetic protein; 1.70A {Pseudomonas aeruginosa PAO1} PDB: 2y4y_A
Probab=16.26 E-value=2.5e+02 Score=18.61 Aligned_cols=32 Identities=9% Similarity=0.161 Sum_probs=24.3
Q ss_pred EEEEEEEeCCeEEEEEEEecC-CcceEEEEEEEe
Q 029871 152 TSSLYVKSNGEVYFYERHLEK-DLWKEQTVAYQI 184 (186)
Q Consensus 152 sTvIlV~~~g~v~f~Er~~~~-~~w~~~~~~F~l 184 (186)
--|+-|+.+ +|.+.|..-|. +.|.++.-...|
T Consensus 60 G~I~~I~~~-~I~l~E~v~Dg~G~W~eR~~~L~L 92 (93)
T 2y4x_A 60 GKVVGISEG-KIDVIEIVPDGEGNWLERPRSLTL 92 (93)
T ss_dssp EEEEEEETT-EEEEEEEEECSSSCEEEEEEEEEC
T ss_pred CEEEEEeCC-eEEEEEEEECCCCCEEEeeEEEEc
Confidence 346667755 69999998875 999988776655
Done!