Query 029871
Match_columns 186
No_of_seqs 107 out of 520
Neff 7.4
Searched_HMMs 13730
Date Mon Mar 25 07:32:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029871.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/029871hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1q98a_ c.47.1.10 (A:) Thiol p 40.5 8 0.00059 26.5 2.6 25 146-170 124-148 (164)
2 d1psqa_ c.47.1.10 (A:) Probabl 35.8 11 0.00079 25.7 2.7 25 146-170 121-145 (163)
3 d1qxha_ c.47.1.10 (A:) Thiol p 32.4 14 0.001 25.1 2.8 25 146-170 126-150 (164)
4 d2fkba1 d.113.1.2 (A:8-168) Hy 26.7 28 0.002 23.3 3.6 25 146-170 27-51 (161)
5 d1nera_ a.35.1.2 (A:) Ner {Bac 21.1 29 0.0021 21.0 2.3 12 73-84 42-53 (74)
6 d1xvqa_ c.47.1.10 (A:) Thiol p 17.8 34 0.0025 23.0 2.5 17 153-169 130-146 (166)
7 d1zzoa1 c.47.1.10 (A:45-178) L 16.3 29 0.0021 22.0 1.7 20 147-166 97-117 (134)
8 d1mzua_ d.110.3.1 (A:) PYP dom 15.9 39 0.0028 20.8 2.2 17 153-169 15-31 (110)
9 d1xvwa1 c.47.1.10 (A:1-153) Pu 15.7 39 0.0029 22.0 2.3 16 153-168 117-132 (153)
10 d2fy6a1 c.47.1.10 (A:33-175) P 15.5 35 0.0026 21.8 2.0 17 152-168 108-124 (143)
No 1
>d1q98a_ c.47.1.10 (A:) Thiol peroxidase Tpx {Haemophilus influenzae [TaxId: 727]}
Probab=40.46 E-value=8 Score=26.53 Aligned_cols=25 Identities=12% Similarity=0.070 Sum_probs=19.3
Q ss_pred ccccceEEEEEEEeCCeEEEEEEEe
Q 029871 146 RYGTRSTSSLYVKSNGEVYFYERHL 170 (186)
Q Consensus 146 ~YGTRssTvIlV~~~g~v~f~Er~~ 170 (186)
.+|.-+-++.+||++|+|.|.|+.-
T Consensus 124 ~~g~~~Ra~fvID~~G~I~y~~~~~ 148 (164)
T d1q98a_ 124 LAGLTSRAVIVLDEQNNVLHSQLVE 148 (164)
T ss_dssp TTTSBCCEEEEECTTSBEEEEEECS
T ss_pred cccCcccEEEEECCCCEEEEEEECC
Confidence 4565445688999999999998754
No 2
>d1psqa_ c.47.1.10 (A:) Probable thiol peroxidase PsaD {Streptococcus pneumoniae [TaxId: 1313]}
Probab=35.78 E-value=11 Score=25.69 Aligned_cols=25 Identities=4% Similarity=0.121 Sum_probs=17.6
Q ss_pred ccccceEEEEEEEeCCeEEEEEEEe
Q 029871 146 RYGTRSTSSLYVKSNGEVYFYERHL 170 (186)
Q Consensus 146 ~YGTRssTvIlV~~~g~v~f~Er~~ 170 (186)
.||.-..++++||++|.|+|.++.-
T Consensus 121 ~~~~~~Ra~fvID~~G~I~y~~~~~ 145 (163)
T d1psqa_ 121 EWHLLARAVFVLDTDNTIRYVEYVD 145 (163)
T ss_dssp TTCSBCCEEEEECTTCBEEEEEECS
T ss_pred cccceeEEEEEECCCCEEEEEEEcC
Confidence 3443223578899999999988743
No 3
>d1qxha_ c.47.1.10 (A:) Thiol peroxidase Tpx {Escherichia coli [TaxId: 562]}
Probab=32.38 E-value=14 Score=25.11 Aligned_cols=25 Identities=16% Similarity=0.162 Sum_probs=18.0
Q ss_pred ccccceEEEEEEEeCCeEEEEEEEe
Q 029871 146 RYGTRSTSSLYVKSNGEVYFYERHL 170 (186)
Q Consensus 146 ~YGTRssTvIlV~~~g~v~f~Er~~ 170 (186)
.+|.-+-++.+||++|+|.|.++.-
T Consensus 126 ~~g~~~ra~fvID~~G~I~y~~~~~ 150 (164)
T d1qxha_ 126 LKGLAARAVVVIDENDNVIFSQLVD 150 (164)
T ss_dssp TTTSBCCEEEEECTTSBEEEEEECS
T ss_pred ccCcccCEEEEEcCCCEEEEEEEcC
Confidence 3454334578899999999988743
No 4
>d2fkba1 d.113.1.2 (A:8-168) Hypothetical protein YfcD {Escherichia coli [TaxId: 562]}
Probab=26.66 E-value=28 Score=23.28 Aligned_cols=25 Identities=16% Similarity=0.133 Sum_probs=20.6
Q ss_pred ccccceEEEEEEEeCCeEEEEEEEe
Q 029871 146 RYGTRSTSSLYVKSNGEVYFYERHL 170 (186)
Q Consensus 146 ~YGTRssTvIlV~~~g~v~f~Er~~ 170 (186)
....|+..||+++.+|++-+..|..
T Consensus 27 ~~~h~~v~v~v~~~~g~vLl~rR~~ 51 (161)
T d2fkba1 27 CLRHRATYIVVHDGMGKILVQRRTE 51 (161)
T ss_dssp TCCEEEEEEEEECSSSCEEEEEECS
T ss_pred CCcEeEEEEEEEeCCCCEEEEEecC
Confidence 3446899999999999998888865
No 5
>d1nera_ a.35.1.2 (A:) Ner {Bacteriophage mu [TaxId: 10677]}
Probab=21.08 E-value=29 Score=20.99 Aligned_cols=12 Identities=33% Similarity=0.991 Sum_probs=9.6
Q ss_pred CCCCCcHHHHHH
Q 029871 73 LLDSPWPKAQRL 84 (186)
Q Consensus 73 ~ld~pWpKv~~g 84 (186)
.|+.||||.++.
T Consensus 42 aL~rp~pKgEri 53 (74)
T d1nera_ 42 ALERHWPKGEQI 53 (74)
T ss_dssp TTTSSCHHHHHH
T ss_pred HHcCCChHHHHH
Confidence 577899998774
No 6
>d1xvqa_ c.47.1.10 (A:) Thiol peroxidase Tpx {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=17.84 E-value=34 Score=22.97 Aligned_cols=17 Identities=18% Similarity=0.327 Sum_probs=14.4
Q ss_pred EEEEEEeCCeEEEEEEE
Q 029871 153 SSLYVKSNGEVYFYERH 169 (186)
Q Consensus 153 TvIlV~~~g~v~f~Er~ 169 (186)
++++||++|+|.|.+..
T Consensus 130 a~fvID~~G~I~y~~~~ 146 (166)
T d1xvqa_ 130 AIVVIGADGNVAYTELV 146 (166)
T ss_dssp EEEEECTTSBEEEEEEC
T ss_pred EEEEEeCCCEEEEEEEc
Confidence 46889999999998773
No 7
>d1zzoa1 c.47.1.10 (A:45-178) Lipoprotein DsbF {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=16.32 E-value=29 Score=22.01 Aligned_cols=20 Identities=20% Similarity=0.459 Sum_probs=14.1
Q ss_pred cccce-EEEEEEEeCCeEEEE
Q 029871 147 YGTRS-TSSLYVKSNGEVYFY 166 (186)
Q Consensus 147 YGTRs-sTvIlV~~~g~v~f~ 166 (186)
||-++ =+.++||++|++.++
T Consensus 97 ~~v~~~P~~~iiD~~G~i~~~ 117 (134)
T d1zzoa1 97 FGVTQQPAYAFVDPHGNVDVV 117 (134)
T ss_dssp TTCCSSSEEEEECTTCCEEEE
T ss_pred cCCCccCeEEEECCCCeEEEE
Confidence 55443 267889999998764
No 8
>d1mzua_ d.110.3.1 (A:) PYP domain of sensor histidine kinase Ppr {Rhodospirillum centenum [TaxId: 34018]}
Probab=15.90 E-value=39 Score=20.81 Aligned_cols=17 Identities=24% Similarity=0.458 Sum_probs=13.6
Q ss_pred EEEEEEeCCeEEEEEEE
Q 029871 153 SSLYVKSNGEVYFYERH 169 (186)
Q Consensus 153 TvIlV~~~g~v~f~Er~ 169 (186)
-||++|++|+++++=+.
T Consensus 15 gvi~~D~~G~I~~~N~a 31 (110)
T d1mzua_ 15 GAIQVDGSGVIHRYNRT 31 (110)
T ss_dssp EEEEEETTCBEEEECHH
T ss_pred EEEEEcCCCCEEEeHHH
Confidence 48999999999887443
No 9
>d1xvwa1 c.47.1.10 (A:1-153) Putative peroxiredoxin Rv2238c/MT2298 {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=15.66 E-value=39 Score=21.98 Aligned_cols=16 Identities=25% Similarity=0.403 Sum_probs=12.8
Q ss_pred EEEEEEeCCeEEEEEE
Q 029871 153 SSLYVKSNGEVYFYER 168 (186)
Q Consensus 153 TvIlV~~~g~v~f~Er 168 (186)
++++||++|+|.+...
T Consensus 117 ~tfvID~~G~I~~~~~ 132 (153)
T d1xvwa1 117 GTFVVDRSGIIRFAEM 132 (153)
T ss_dssp EEEEECTTSBEEEEEE
T ss_pred eEEEECCCCEEEEEEE
Confidence 3567899999998765
No 10
>d2fy6a1 c.47.1.10 (A:33-175) Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain {Neisseria meningitidis serogroup A [TaxId: 65699]}
Probab=15.49 E-value=35 Score=21.83 Aligned_cols=17 Identities=18% Similarity=0.198 Sum_probs=13.3
Q ss_pred EEEEEEEeCCeEEEEEE
Q 029871 152 TSSLYVKSNGEVYFYER 168 (186)
Q Consensus 152 sTvIlV~~~g~v~f~Er 168 (186)
=|+++||++|++...-.
T Consensus 108 P~~~liD~~G~i~~~~~ 124 (143)
T d2fy6a1 108 PSWALIGKDGDVQRIVK 124 (143)
T ss_dssp SEEEEECTTSCEEEEEE
T ss_pred CEEEEECCCCEEEEEEE
Confidence 47899999999876643
Done!