Query 029872
Match_columns 186
No_of_seqs 123 out of 231
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 07:33:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029872.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029872hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3arc_T Photosystem II reaction 40.4 36 0.0012 20.7 3.5 22 3-24 2-23 (32)
2 3eyy_A Putative iron uptake re 20.5 28 0.00095 26.1 0.7 35 79-113 33-68 (145)
3 1mzb_A Ferric uptake regulatio 18.2 29 0.00099 25.6 0.3 36 78-113 33-69 (136)
4 3mwm_A ZUR, putative metal upt 15.9 30 0.001 25.8 -0.2 34 79-112 29-63 (139)
5 4b4a_A TATC, SEC-independent p 15.5 97 0.0033 25.8 2.9 26 69-95 68-93 (249)
6 2w57_A Ferric uptake regulatio 14.3 32 0.0011 25.9 -0.3 36 78-113 32-68 (150)
7 2fe3_A Peroxide operon regulat 13.7 42 0.0014 25.0 0.2 36 78-113 36-72 (145)
8 2xig_A Ferric uptake regulatio 13.1 32 0.0011 26.0 -0.7 36 78-113 41-77 (150)
9 1k8b_A EIF-2-beta, probable tr 12.8 1E+02 0.0035 20.0 1.9 26 35-62 9-34 (52)
10 3cjs_B 50S ribosomal protein L 11.5 59 0.002 22.6 0.4 13 37-49 31-43 (72)
No 1
>3arc_T Photosystem II reaction center protein T; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_T* 2axt_T* 3bz1_T* 3bz2_T* 3kzi_T* 3prq_T* 3prr_T* 3a0b_T* 3a0h_T*
Probab=40.36 E-value=36 Score=20.66 Aligned_cols=22 Identities=14% Similarity=0.410 Sum_probs=19.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 029872 3 DLLGWFLVFIFLISLLGILSYQ 24 (186)
Q Consensus 3 ~~~~wila~i~~~~llfl~vy~ 24 (186)
|.+++.+.++.+.+.+|.++++
T Consensus 2 Ea~vYt~ll~~tlgiiFFAI~F 23 (32)
T 3arc_T 2 ETITYVFIFACIIALFFFAIFF 23 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHHHHhhhh
Confidence 7888999999999999998887
No 2
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=20.48 E-value=28 Score=26.14 Aligned_cols=35 Identities=14% Similarity=0.139 Sum_probs=27.9
Q ss_pred hHHHHHhhhhhccCC-cCchhhHhHhHHHHHHHHHH
Q 029872 79 PYLYFNVRLYTRRQH-LVDVTEIYSQLTWEKHLRLY 113 (186)
Q Consensus 79 Pll~y~v~~y~~r~h-l~DpTeIfn~L~~~kke~~i 113 (186)
|+.++.++.-.++++ -+++++|+|+|+.-...+.+
T Consensus 33 h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 68 (145)
T 3eyy_A 33 HATPDDILGEVRKTASGINISTVYRTLELLEELGLV 68 (145)
T ss_dssp SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSE
T ss_pred CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcE
Confidence 678888887777664 58999999999988877644
No 3
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=18.19 E-value=29 Score=25.57 Aligned_cols=36 Identities=17% Similarity=-0.038 Sum_probs=28.0
Q ss_pred hhHHHHHhhhhhccCC-cCchhhHhHhHHHHHHHHHH
Q 029872 78 LPYLYFNVRLYTRRQH-LVDVTEIYSQLTWEKHLRLY 113 (186)
Q Consensus 78 lPll~y~v~~y~~r~h-l~DpTeIfn~L~~~kke~~i 113 (186)
-|+.+..++...++++ -+++++|+|+|+.-...+.+
T Consensus 33 ~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 69 (136)
T 1mzb_A 33 RHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLV 69 (136)
T ss_dssp CSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred CCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcE
Confidence 4678888887776554 58999999999988887654
No 4
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=15.89 E-value=30 Score=25.80 Aligned_cols=34 Identities=12% Similarity=-0.009 Sum_probs=24.3
Q ss_pred hHHHHHhhhhhccCC-cCchhhHhHhHHHHHHHHH
Q 029872 79 PYLYFNVRLYTRRQH-LVDVTEIYSQLTWEKHLRL 112 (186)
Q Consensus 79 Pll~y~v~~y~~r~h-l~DpTeIfn~L~~~kke~~ 112 (186)
|+.+..++...++++ -++.++|+|+|+.-...+.
T Consensus 29 h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Gl 63 (139)
T 3mwm_A 29 FRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGE 63 (139)
T ss_dssp CEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTS
T ss_pred CCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCC
Confidence 667777776666554 4788888888887776654
No 5
>4b4a_A TATC, SEC-independent protein translocase protein TATC; transport protein, TAT secretion system, protein translocati; HET: LMN; 3.50A {Aquifex aeolicus}
Probab=15.53 E-value=97 Score=25.82 Aligned_cols=26 Identities=12% Similarity=0.263 Sum_probs=20.8
Q ss_pred hHHHHHHhhhhHHHHHhhhhhccCCcC
Q 029872 69 EHWFMFLLSLPYLYFNVRLYTRRQHLV 95 (186)
Q Consensus 69 g~W~~~llnlPll~y~v~~y~~r~hl~ 95 (186)
.-+....++.|...|.+|++.+. |++
T Consensus 68 s~~~g~~~a~P~ilyQiw~Fi~P-gLy 93 (249)
T 4b4a_A 68 SLAVGFIIASPVILYQFWRFIEP-ALY 93 (249)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT-TTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc-ccc
Confidence 44577899999999999998864 554
No 6
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=14.33 E-value=32 Score=25.94 Aligned_cols=36 Identities=6% Similarity=-0.105 Sum_probs=27.9
Q ss_pred hhHHHHHhhhhhccCC-cCchhhHhHhHHHHHHHHHH
Q 029872 78 LPYLYFNVRLYTRRQH-LVDVTEIYSQLTWEKHLRLY 113 (186)
Q Consensus 78 lPll~y~v~~y~~r~h-l~DpTeIfn~L~~~kke~~i 113 (186)
-|+.+..++...++++ -+++++|+|+|+.-...+.+
T Consensus 32 ~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 68 (150)
T 2w57_A 32 QHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIV 68 (150)
T ss_dssp SSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSE
T ss_pred CCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcE
Confidence 4678888887776654 58999999999888777654
No 7
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=13.68 E-value=42 Score=24.99 Aligned_cols=36 Identities=11% Similarity=0.012 Sum_probs=27.9
Q ss_pred hhHHHHHhhhhhccCC-cCchhhHhHhHHHHHHHHHH
Q 029872 78 LPYLYFNVRLYTRRQH-LVDVTEIYSQLTWEKHLRLY 113 (186)
Q Consensus 78 lPll~y~v~~y~~r~h-l~DpTeIfn~L~~~kke~~i 113 (186)
-|+.+..++...++++ -+++++|+|+|+.-...+.+
T Consensus 36 ~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 72 (145)
T 2fe3_A 36 AHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLV 72 (145)
T ss_dssp SCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSE
T ss_pred CCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCE
Confidence 4778888887777664 58999999999888777644
No 8
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=13.05 E-value=32 Score=25.97 Aligned_cols=36 Identities=8% Similarity=0.122 Sum_probs=27.1
Q ss_pred hhHHHHHhhhhhccCC-cCchhhHhHhHHHHHHHHHH
Q 029872 78 LPYLYFNVRLYTRRQH-LVDVTEIYSQLTWEKHLRLY 113 (186)
Q Consensus 78 lPll~y~v~~y~~r~h-l~DpTeIfn~L~~~kke~~i 113 (186)
-|+.++.++...++++ -+++++|+|+|+.-...+.+
T Consensus 41 ~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 77 (150)
T 2xig_A 41 THLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFI 77 (150)
T ss_dssp SCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSE
T ss_pred CCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcE
Confidence 4778888887776553 58999999998887777644
No 9
>1k8b_A EIF-2-beta, probable translation initiation factor 2 beta subunit; N-terminal domain, AIF2 subunit beta; NMR {Methanocaldococcus jannaschii} SCOP: d.241.1.1
Probab=12.80 E-value=1e+02 Score=20.00 Aligned_cols=26 Identities=27% Similarity=0.110 Sum_probs=20.8
Q ss_pred cccCChHHHhhhcCcchhhHHHHHHHHH
Q 029872 35 GDYINPYDSAAQINMLVFPEFFTQGTLC 62 (186)
Q Consensus 35 ~DyiNPiD~c~rLN~lVlPE~i~h~~l~ 62 (186)
+-+.|=.|.|+++|| -||+..+-+.+
T Consensus 9 Tvi~Nf~~Ia~~L~R--~p~hv~ky~~~ 34 (52)
T 1k8b_A 9 TIIRNFRELAKAVNR--DEEFFAKYLLK 34 (52)
T ss_dssp EEECCHHHHHHHHHT--CHHHHHHHHHH
T ss_pred EEEECHHHHHHHHCC--CHHHHHHHHHH
Confidence 556799999999999 58887776654
No 10
>3cjs_B 50S ribosomal protein L11, ribosomal protein L11 methyltransferase; S-adenosyl-L-methionine dependent methyltransferase; 1.37A {Thermus thermophilus} SCOP: d.47.1.1 PDB: 3cju_B* 2bcw_A
Probab=11.50 E-value=59 Score=22.58 Aligned_cols=13 Identities=15% Similarity=-0.005 Sum_probs=11.4
Q ss_pred cCChHHHhhhcCc
Q 029872 37 YINPYDSAAQINM 49 (186)
Q Consensus 37 yiNPiD~c~rLN~ 49 (186)
=+|+.|.|+.+|.
T Consensus 31 Gvni~~f~k~fN~ 43 (72)
T 3cjs_B 31 GANIMEFVKAFNA 43 (72)
T ss_dssp TCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 3799999999996
Done!