Query 029872
Match_columns 186
No_of_seqs 123 out of 231
Neff 4.3
Searched_HMMs 13730
Date Mon Mar 25 07:34:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029872.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/029872hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1mzba_ a.4.5.42 (A:) Ferric u 19.9 12 0.00086 25.8 0.3 35 79-113 32-67 (134)
2 d2axtt1 f.23.34.1 (T:1-30) Pho 18.4 71 0.0051 17.4 3.4 22 3-24 2-23 (30)
3 d1otsa_ f.20.1.1 (A:) Clc chlo 7.0 1.8E+02 0.013 23.3 3.8 36 74-110 408-443 (444)
4 d1mmsa2 d.47.1.1 (A:8-70) Ribo 6.9 56 0.004 20.7 0.4 13 37-49 25-37 (63)
5 d2a65a1 f.54.1.1 (A:5-513) Na( 6.6 5.1E+02 0.037 20.6 6.7 26 66-91 40-67 (509)
6 d1qf8a_ g.41.4.1 (A:) Casein k 6.5 74 0.0054 23.6 1.0 47 125-175 72-118 (173)
7 d2gtga1 a.64.1.1 (A:2-79) Sapo 5.9 87 0.0063 18.7 1.0 17 31-48 59-75 (78)
8 d1k8ba_ d.241.1.1 (A:) Transla 5.7 1.4E+02 0.01 17.6 1.9 27 34-62 8-34 (52)
9 d1of9a_ a.64.1.4 (A:) Ameobapo 5.3 1E+02 0.0075 18.7 1.0 21 27-48 55-75 (77)
10 d2gycg2 d.47.1.1 (G:2-72) Ribo 5.1 56 0.0041 21.2 -0.5 14 36-49 29-42 (71)
No 1
>d1mzba_ a.4.5.42 (A:) Ferric uptake regulation protein, FUR {Pseudomonas aeruginosa [TaxId: 287]}
Probab=19.89 E-value=12 Score=25.85 Aligned_cols=35 Identities=17% Similarity=-0.018 Sum_probs=27.1
Q ss_pred hHHHHHhhhhhccCC-cCchhhHhHhHHHHHHHHHH
Q 029872 79 PYLYFNVRLYTRRQH-LVDVTEIYSQLTWEKHLRLY 113 (186)
Q Consensus 79 Pll~y~v~~y~~r~h-l~DpTeIfn~L~~~kke~~i 113 (186)
|+.+..++...+.++ -+|.++|||+|+.-...+.+
T Consensus 32 h~sa~ei~~~l~~~~~~i~~aTVYR~L~~l~e~gli 67 (134)
T d1mzba_ 32 HMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLV 67 (134)
T ss_dssp SBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred CCCHHHHHHHHHHhCCCccHHHHHHHHHHHHhccEE
Confidence 778888887777664 58999999998887777643
No 2
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=18.36 E-value=71 Score=17.39 Aligned_cols=22 Identities=14% Similarity=0.410 Sum_probs=17.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 029872 3 DLLGWFLVFIFLISLLGILSYQ 24 (186)
Q Consensus 3 ~~~~wila~i~~~~llfl~vy~ 24 (186)
|...+++.|....++.|..+++
T Consensus 2 e~i~yv~ifac~i~lfffaiff 23 (30)
T d2axtt1 2 ETITYVFIFACIIALFFFAIFF 23 (30)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred ceeehHHHHHHHHHHHHHHHHh
Confidence 5677888887778888888876
No 3
>d1otsa_ f.20.1.1 (A:) Clc chloride channel {Escherichia coli [TaxId: 562]}
Probab=6.95 E-value=1.8e+02 Score=23.35 Aligned_cols=36 Identities=8% Similarity=-0.062 Sum_probs=26.8
Q ss_pred HHhhhhHHHHHhhhhhccCCcCchhhHhHhHHHHHHH
Q 029872 74 FLLSLPYLYFNVRLYTRRQHLVDVTEIYSQLTWEKHL 110 (186)
Q Consensus 74 ~llnlPll~y~v~~y~~r~hl~DpTeIfn~L~~~kke 110 (186)
-++-.-+.+|-+.+..+++.+|| +-+-|+++++++|
T Consensus 408 p~~ia~~~a~~v~~~~~~~siY~-~~l~~~~~~~~~~ 443 (444)
T d1otsa_ 408 PMIITGLGATLLAQFTGGKPLYS-AILARTLAKQEAE 443 (444)
T ss_dssp HHHHHHHHHHHHHHTTTCCCHHH-HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhCCCChHH-HHHHHHHHhhhcc
Confidence 34445567888888888888998 6677788877765
No 4
>d1mmsa2 d.47.1.1 (A:8-70) Ribosomal protein L11, N-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=6.87 E-value=56 Score=20.73 Aligned_cols=13 Identities=15% Similarity=0.148 Sum_probs=10.9
Q ss_pred cCChHHHhhhcCc
Q 029872 37 YINPYDSAAQINM 49 (186)
Q Consensus 37 yiNPiD~c~rLN~ 49 (186)
=+|.+|.|+..|.
T Consensus 25 GiNi~~F~k~fN~ 37 (63)
T d1mmsa2 25 GVNIMEFCKRFNA 37 (63)
T ss_dssp TCCHHHHHHHHHH
T ss_pred CcCHHHHHHHHHH
Confidence 3799999999985
No 5
>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]}
Probab=6.57 E-value=5.1e+02 Score=20.62 Aligned_cols=26 Identities=15% Similarity=0.342 Sum_probs=18.9
Q ss_pred HhhhHHHHHHhhhhHHHHHhh--hhhcc
Q 029872 66 LITEHWFMFLLSLPYLYFNVR--LYTRR 91 (186)
Q Consensus 66 Ll~g~W~~~llnlPll~y~v~--~y~~r 91 (186)
++.---.+++..+|++.-... |+.++
T Consensus 40 lipY~~~l~l~gvPll~lE~~lGq~~~~ 67 (509)
T d2a65a1 40 MIPYIIAFLLVGIPLMWIEWAMGRYGGA 67 (509)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 334445788999999998876 67555
No 6
>d1qf8a_ g.41.4.1 (A:) Casein kinase II beta subunit {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.52 E-value=74 Score=23.58 Aligned_cols=47 Identities=23% Similarity=0.364 Sum_probs=37.4
Q ss_pred HHHHHHHHhcccCCCccccchhheehhhhhhhhhhhhhhccccccccchhh
Q 029872 125 CIFWYCGSRCFDTLHESLFGLCEVTFKYVIGYFGLLEEISIDQASVLPTSL 175 (186)
Q Consensus 125 yLY~mI~sLv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (186)
-||.+|++-.--. -=|+-.+.=||.-|-||--..+.=++..+||.++
T Consensus 72 ~LYGLIHaRyI~T----~~Gl~~m~eKy~~g~FG~CPRv~C~~~~~LPiGl 118 (173)
T d1qf8a_ 72 MLYGLIHARYILT----NRGIAQMLEKYQQGDFGYCPRVYCENQPMLPIGL 118 (173)
T ss_dssp HHHHHHHHHHTTS----HHHHHHHHHHHHTTTTCBCCBGGGTTCBCEEECS
T ss_pred HHHHHhhhheeec----HhHHHHHHHHHhCCCCCCCCCcccCCCccccccc
Confidence 4788898864331 1277778889999999999999999999999765
No 7
>d2gtga1 a.64.1.1 (A:2-79) Saposin C {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.94 E-value=87 Score=18.74 Aligned_cols=17 Identities=12% Similarity=0.079 Sum_probs=12.7
Q ss_pred hccccccCChHHHhhhcC
Q 029872 31 TDLEGDYINPYDSAAQIN 48 (186)
Q Consensus 31 sDLE~DyiNPiD~c~rLN 48 (186)
+.++. ..||-+.|+.++
T Consensus 59 ~~l~~-~~~p~~iC~~l~ 75 (78)
T d2gtga1 59 SILLE-EVSPELVCSMLH 75 (78)
T ss_dssp HHHHT-TCCHHHHHHHTT
T ss_pred HHHHh-CCCHHHHHHHcC
Confidence 33444 679999999886
No 8
>d1k8ba_ d.241.1.1 (A:) Translation initiation factor 2 beta, aIF2beta, N-terminal domain {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=5.69 E-value=1.4e+02 Score=17.64 Aligned_cols=27 Identities=26% Similarity=0.111 Sum_probs=20.4
Q ss_pred ccccCChHHHhhhcCcchhhHHHHHHHHH
Q 029872 34 EGDYINPYDSAAQINMLVFPEFFTQGTLC 62 (186)
Q Consensus 34 E~DyiNPiD~c~rLN~lVlPE~i~h~~l~ 62 (186)
++-+.|=.|.|+++|| -||.+.+-+.+
T Consensus 8 kTvi~Nf~eI~~~L~R--~p~hv~kfl~~ 34 (52)
T d1k8ba_ 8 RTIIRNFRELAKAVNR--DEEFFAKYLLK 34 (52)
T ss_dssp EEEECCHHHHHHHHHT--CHHHHHHHHHH
T ss_pred eEeeecHHHHHHHhCC--CHHHHHHHHHH
Confidence 3556788999999999 57777766543
No 9
>d1of9a_ a.64.1.4 (A:) Ameobapore A {Entamoeba histolytica [TaxId: 5759]}
Probab=5.33 E-value=1e+02 Score=18.71 Aligned_cols=21 Identities=14% Similarity=0.153 Sum_probs=14.5
Q ss_pred hhhhhccccccCChHHHhhhcC
Q 029872 27 LMYLTDLEGDYINPYDSAAQIN 48 (186)
Q Consensus 27 iI~lsDLE~DyiNPiD~c~rLN 48 (186)
=..++.++. ..||.+.|+.++
T Consensus 55 ~~ii~~l~~-~~~p~~iC~~l~ 75 (77)
T d1of9a_ 55 DKLIQLIED-KVDANAICAKIH 75 (77)
T ss_dssp HHHHHHHHH-TCCHHHHHHHHS
T ss_pred HHHHHHHHH-cCCHHHHHHhcC
Confidence 344555666 459999998875
No 10
>d2gycg2 d.47.1.1 (G:2-72) Ribosomal protein L11, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=5.09 E-value=56 Score=21.16 Aligned_cols=14 Identities=14% Similarity=0.119 Sum_probs=11.1
Q ss_pred ccCChHHHhhhcCc
Q 029872 36 DYINPYDSAAQINM 49 (186)
Q Consensus 36 DyiNPiD~c~rLN~ 49 (186)
-=+|.+|+|++.|.
T Consensus 29 ~GiNi~~F~k~fN~ 42 (71)
T d2gycg2 29 QGVNIMEFCKAFNA 42 (71)
T ss_dssp SSCCSSSSSTTTTT
T ss_pred cCcCHHHHHHHHHH
Confidence 34788899999985
Done!