BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 029873
         (186 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3O0H|A Chain A, Crystal Structure Of Glutathione Reductase From Bartonella
           Henselae
 pdb|3O0H|B Chain B, Crystal Structure Of Glutathione Reductase From Bartonella
           Henselae
          Length = 484

 Score = 37.7 bits (86), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 36/113 (31%), Positives = 48/113 (42%), Gaps = 7/113 (6%)

Query: 45  EESLNSRRSWGENLQYYTGSGYLSGAVLGAIKGSVEGLRQAEPSDSLKLRVNRVLNSGGQ 104
           E S+   R   E +   TG+  +S +   AIKGS   L   E  D  KL  + V+  GG 
Sbjct: 145 ELSVTGERISAEKILIATGAKIVSNS---AIKGSDLCLTSNEIFDLEKLPKSIVIVGGGY 201

Query: 105 VGRRFGNSLGVLGLIFAGMESGLIYLRDSD----DLLNTVAAGLGTGAIYRAA 153
           +G  F N    LG+    +  G + LR+ D     LLN      G   IY A 
Sbjct: 202 IGVEFANIFHGLGVKTTLLHRGDLILRNFDYDLRQLLNDAMVAKGISIIYEAT 254


>pdb|3JTE|A Chain A, Crystal Structure Of Response Regulator Receiver Domain
           Protein From Clostridium Thermocellum
          Length = 143

 Score = 26.9 bits (58), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 13/41 (31%), Positives = 21/41 (51%)

Query: 60  YYTGSGYLSGAVLGAIKGSVEGLRQAEPSDSLKLRVNRVLN 100
             TG G L  A+L   +G+ E LR+   +  L + +N  +N
Sbjct: 82  ILTGHGDLDNAILAMKEGAFEYLRKPVTAQDLSIAINNAIN 122


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.316    0.135    0.390 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,217,778
Number of Sequences: 62578
Number of extensions: 218192
Number of successful extensions: 458
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 456
Number of HSP's gapped (non-prelim): 4
length of query: 186
length of database: 14,973,337
effective HSP length: 93
effective length of query: 93
effective length of database: 9,153,583
effective search space: 851283219
effective search space used: 851283219
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (23.1 bits)