Query 029873
Match_columns 186
No_of_seqs 166 out of 663
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 05:00:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029873.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029873hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3324 Mitochondrial import i 100.0 6.3E-53 1.4E-57 342.4 13.0 183 3-186 21-206 (206)
2 TIGR00983 3a0801s02tim23 mitoc 100.0 6E-45 1.3E-49 288.4 12.9 140 33-173 10-149 (149)
3 PTZ00236 mitochondrial import 100.0 2.3E-32 5E-37 218.9 14.1 135 45-185 4-138 (164)
4 TIGR00980 3a0801so1tim17 mitoc 100.0 1E-31 2.3E-36 216.5 14.1 135 45-185 2-136 (170)
5 PF02466 Tim17: Tim17/Tim22/Ti 99.9 2.6E-26 5.6E-31 175.8 13.5 127 53-179 1-127 (128)
6 KOG1652 Mitochondrial import i 99.9 2E-26 4.3E-31 185.4 3.3 134 45-184 2-135 (183)
7 KOG3225 Mitochondrial import i 99.9 1.3E-22 2.8E-27 160.5 6.1 123 51-174 36-161 (168)
8 COG5596 TIM22 Mitochondrial im 99.8 3.2E-22 6.9E-27 161.9 1.1 146 30-178 33-188 (191)
9 KOG4608 Uncharacterized conser 99.3 5.2E-13 1.1E-17 112.3 2.4 161 14-183 36-208 (270)
10 COG5596 TIM22 Mitochondrial im 97.1 8.9E-05 1.9E-09 60.7 -0.9 97 57-157 33-130 (191)
11 TIGR00983 3a0801s02tim23 mitoc 96.4 0.026 5.6E-07 45.0 8.4 100 32-131 1-103 (149)
12 PF02466 Tim17: Tim17/Tim22/Ti 93.2 0.52 1.1E-05 35.5 7.3 125 58-182 2-126 (128)
13 KOG4096 Uncharacterized conser 91.0 0.19 4.1E-06 35.4 2.3 63 57-126 10-72 (75)
14 KOG1398 Uncharacterized conser 87.4 0.86 1.9E-05 41.8 4.4 46 104-149 297-342 (460)
15 PF10247 Romo1: Reactive mitoc 86.6 0.77 1.7E-05 31.9 2.8 49 64-119 13-61 (67)
16 PF12732 YtxH: YtxH-like prote 83.6 1.4 3.1E-05 30.4 3.2 39 66-104 1-40 (74)
17 PF13436 Gly-zipper_OmpA: Glyc 79.3 4.6 0.0001 30.7 4.9 45 134-178 50-96 (118)
18 PF10439 Bacteriocin_IIc: Bact 71.7 10 0.00023 25.7 4.6 37 134-170 23-60 (65)
19 PF13488 Gly-zipper_Omp: Glyci 68.3 15 0.00032 23.5 4.4 34 141-174 4-39 (46)
20 PTZ00236 mitochondrial import 59.1 96 0.0021 25.1 9.3 128 49-181 11-138 (164)
21 PF05818 TraT: Enterobacterial 57.4 17 0.00036 30.8 4.1 35 139-173 89-125 (215)
22 PF11981 DUF3482: Domain of un 56.9 21 0.00045 31.4 4.8 40 139-178 151-190 (292)
23 TIGR03789 pdsO proteobacterial 56.1 14 0.00029 31.7 3.4 35 139-173 42-77 (239)
24 PF13441 Gly-zipper_YMGG: YMGG 55.2 11 0.00024 24.1 2.1 34 140-173 7-42 (45)
25 TIGR00980 3a0801so1tim17 mitoc 54.7 47 0.001 27.0 6.2 111 63-178 22-133 (170)
26 PF03875 Statherin: Statherin; 54.2 12 0.00026 23.3 2.0 22 18-41 18-39 (42)
27 PRK10510 putative outer membra 53.7 14 0.00031 30.9 3.1 35 139-173 38-77 (219)
28 TIGR02359 thiW thiW protein. L 52.7 1.2E+02 0.0026 24.3 8.5 17 66-82 39-55 (160)
29 COG4980 GvpP Gas vesicle prote 49.3 50 0.0011 25.3 5.2 24 64-87 5-28 (115)
30 KOG3324 Mitochondrial import i 45.6 27 0.00058 29.3 3.4 148 33-182 42-197 (206)
31 PF11840 DUF3360: Protein of u 41.1 7.5 0.00016 35.9 -0.5 40 18-60 13-52 (492)
32 KOG4505 Na+/H+ antiporter [Ino 40.4 1.1E+02 0.0024 28.2 6.7 77 51-145 200-276 (467)
33 PF13436 Gly-zipper_OmpA: Glyc 39.1 75 0.0016 24.0 4.8 15 158-172 80-94 (118)
34 KOG0754 Mitochondrial oxodicar 34.7 15 0.00033 32.0 0.4 39 111-149 177-215 (294)
35 PF13548 DUF4126: Domain of un 34.6 2.5E+02 0.0055 22.8 8.5 66 116-181 49-121 (177)
36 PRK09824 PTS system beta-gluco 33.9 4.1E+02 0.0089 26.0 10.0 15 65-79 288-302 (627)
37 PRK10540 lipoprotein; Provisio 33.5 1.7E+02 0.0036 20.4 5.7 31 139-170 37-67 (72)
38 PF12597 DUF3767: Protein of u 27.5 1.1E+02 0.0024 23.2 4.1 22 64-85 42-63 (118)
39 PF03116 NQR2_RnfD_RnfE: NQR2, 24.7 2E+02 0.0043 25.4 5.8 48 121-168 53-104 (313)
40 KOG1398 Uncharacterized conser 24.5 3.1E+02 0.0068 25.6 7.0 94 51-149 24-121 (460)
41 PF06897 DUF1269: Protein of u 24.2 1.9E+02 0.0041 21.3 4.7 33 142-174 3-37 (102)
42 PF11990 DUF3487: Protein of u 24.2 1.9E+02 0.0042 22.0 4.9 38 140-177 34-71 (121)
43 COG2979 Uncharacterized protei 24.1 1.4E+02 0.003 25.4 4.3 38 133-170 31-68 (225)
44 KOG1289 Amino acid transporter 23.8 6.7E+02 0.015 24.3 11.0 93 58-153 289-408 (550)
45 COG2261 Predicted membrane pro 23.3 2E+02 0.0043 20.7 4.4 11 141-151 12-22 (82)
46 PHA01399 membrane protein P6 22.7 2.1E+02 0.0046 24.0 5.1 37 142-179 130-172 (242)
47 PF09955 DUF2189: Predicted in 21.8 3.6E+02 0.0079 20.4 8.0 98 74-176 16-118 (128)
48 PF09769 ApoO: Apolipoprotein 20.6 50 0.0011 25.9 1.0 36 139-174 99-134 (158)
49 PRK09796 PTS system cellobiose 20.4 7.2E+02 0.016 23.4 10.1 14 66-79 291-304 (472)
50 KOG3244 Protein involved in ub 20.2 96 0.0021 26.8 2.7 60 125-185 156-222 (267)
No 1
>KOG3324 consensus Mitochondrial import inner membrane translocase, subunit TIM23 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.3e-53 Score=342.38 Aligned_cols=183 Identities=50% Similarity=0.801 Sum_probs=173.9
Q ss_pred CCCCCCcCCCCCCCCCCCCCCCCCCCc--ccccCCCCCCcccchhhhhhccCCcccchhhhhhhhHHHHhHHHHHHHHhh
Q 029873 3 DSSSNQTHSKEHNYRRYHPYQQFDVPI--QNLYNLPTSPEFLFHEESLNSRRSWGENLQYYTGSGYLSGAVLGAIKGSVE 80 (186)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~py~~~~~~~--~~~~~~~~~pe~lf~ee~~~~~r~~~e~l~~~tG~~yl~G~~~Gg~~G~~~ 80 (186)
++.+.+.|. +...++||||+++|.|. ++||.+|++|||||+||..+++|.|.|++||.||++|+.|+++|+++|++.
T Consensus 21 n~~sg~~~~-d~~~~~l~P~~~ld~~~n~d~ly~~~~~pefl~~~eg~~~~rgw~E~l~f~tG~~yl~G~~iGa~~G~~~ 99 (206)
T KOG3324|consen 21 NIGSGPSHA-DLDPRPLNPYQPLDKPLNVDYLYLLPDQPEFLFPEEGAIKRRGWFENLTFGTGWAYLTGSAIGAFNGLIL 99 (206)
T ss_pred CCCCCCCcc-cCCccccCcccccccccccchhhhccCCccccCchhccccccchhhhhheeccchhccchhhhhHHHHHH
Confidence 344554332 37789999999999888 999999999999999999999999999999999999999999999999999
Q ss_pred hcccCCCCchHHHHHHHHHHhhccchhhhhhhHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHhhCCChHHHH
Q 029873 81 GLRQAEPSDSLKLRVNRVLNSGGQVGRRFGNSLGVLGLIFAGMESGLIYLRDSDDLLNTVAAGLGTGAIYRAAGGLRSAA 160 (186)
Q Consensus 81 G~~~~~~g~~~k~r~~~~ln~~~k~g~~~g~~~g~~g~~ys~~e~~l~~~R~k~D~~Nsv~AG~~TGal~~~~~G~raa~ 160 (186)
|+++++++.+.|+|+|+|||+++|+|+.|||++|+++++|+++|+++++.|+|||++|+|+||++||+|||+++|+|+++
T Consensus 100 Glk~~e~~~~~Klr~nrILN~~t~~G~~~gN~lG~laL~YsaiesgI~~~R~~dd~lnsv~AGalTGalyrs~~Glr~~a 179 (206)
T KOG3324|consen 100 GLKNTENGASGKLRLNRILNSVTRRGRFWGNTLGSLALMYSAIESGIEATRGKDDDLNSVAAGALTGALYRSTRGLRAAA 179 (206)
T ss_pred hhhcCCCCCccchhHHHHhhhccccccccccchhHHHHHHHHHHHHHHHhhccccchhhhhhhhhhhhhhhcCCCchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHHHHHHHHHhh-hcCC
Q 029873 161 VAGAIGGITAAAAVAGKQAVKR-YVPI 186 (186)
Q Consensus 161 ig~~~G~~la~~~~~~~~~~~r-~~~~ 186 (186)
+++++|++++++|++.|+.++| |+||
T Consensus 180 v~ga~g~~aa~aw~l~k~~~~~r~~~~ 206 (206)
T KOG3324|consen 180 VAGAVGGTAAAAWTLGKRIVKRRFVPI 206 (206)
T ss_pred HHHHHHHHHHHHHHHhhhHHhhhcCCC
Confidence 9999999999999999999998 9997
No 2
>TIGR00983 3a0801s02tim23 mitochondrial import inner membrane translocase subunit tim23.
Probab=100.00 E-value=6e-45 Score=288.44 Aligned_cols=140 Identities=36% Similarity=0.592 Sum_probs=129.2
Q ss_pred cCCCCCCcccchhhhhhccCCcccchhhhhhhhHHHHhHHHHHHHHhhhcccCCCCchHHHHHHHHHHhhccchhhhhhh
Q 029873 33 YNLPTSPEFLFHEESLNSRRSWGENLQYYTGSGYLSGAVLGAIKGSVEGLRQAEPSDSLKLRVNRVLNSGGQVGRRFGNS 112 (186)
Q Consensus 33 ~~~~~~pe~lf~ee~~~~~r~~~e~l~~~tG~~yl~G~~~Gg~~G~~~G~~~~~~g~~~k~r~~~~ln~~~k~g~~~g~~ 112 (186)
|...+++|++|||++ .++|.|+|++||.||++|++|.++|+++|+++|++++|.+.+.|+|+|+++|+++++++++||+
T Consensus 10 ~l~~~~~~~~~~~g~-~~~R~~~e~~~~~~G~ay~~G~~~Gg~~Gl~~G~~~~~~~~~~k~rln~~ln~~~~~g~~~G~~ 88 (149)
T TIGR00983 10 YLVQEEDELSLLTGA-NPSRGWFEDLCFGTGTCYLTGLAIGALNGLRLGLKETQSMPWTKLRLNQILNMVTRRGPFWGNT 88 (149)
T ss_pred HHcCcchhhcCCCCC-CCCCChhhhhhhhHhHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhHhHHHHHH
Confidence 444445555555554 3899999999999999999999999999999999998877788999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHhhCCChHHHHHhHHHHHHHHHHH
Q 029873 113 LGVLGLIFAGMESGLIYLRDSDDLLNTVAAGLGTGAIYRAAGGLRSAAVAGAIGGITAAAA 173 (186)
Q Consensus 113 ~g~~g~~ys~~e~~l~~~R~k~D~~Nsv~AG~~TGal~~~~~G~raa~ig~~~G~~la~~~ 173 (186)
||+|+++|+++||.++++|+|||+||+|+||++||++|++++|||++++++++|++++++|
T Consensus 89 ~g~~g~lys~~e~~i~~~R~k~D~~Nsv~AGa~TGal~~~~~G~r~~~~g~~~G~~l~~~~ 149 (149)
T TIGR00983 89 LGILALVYNGINSIIEATRGKHDDFNSVAAGALTGALYKSTRGLRGMARSGALGATAAGVW 149 (149)
T ss_pred HHHHHHHHHHHHHHHHHHhccchhhHhHHHHHHHHHHHHhccChHHHHHHhHHHHHHhhcC
Confidence 9999999999999999999999999999999999999999999999999999999999876
No 3
>PTZ00236 mitochondrial import inner membrane translocase subunit tim17; Provisional
Probab=100.00 E-value=2.3e-32 Score=218.94 Aligned_cols=135 Identities=21% Similarity=0.286 Sum_probs=126.7
Q ss_pred hhhhhccCCcccchhhhhhhhHHHHhHHHHHHHHhhhcccCCCCchHHHHHHHHHHhhccchhhhhhhHHHHHHHHHHHH
Q 029873 45 EESLNSRRSWGENLQYYTGSGYLSGAVLGAIKGSVEGLRQAEPSDSLKLRVNRVLNSGGQVGRRFGNSLGVLGLIFAGME 124 (186)
Q Consensus 45 ee~~~~~r~~~e~l~~~tG~~yl~G~~~Gg~~G~~~G~~~~~~g~~~k~r~~~~ln~~~k~g~~~g~~~g~~g~~ys~~e 124 (186)
+|..+++|+| ++....|.+|++|++.|+++++++|+||+|.+ .|++.+++.++++++++|++||+||++|+++|
T Consensus 4 ~~~~r~pcp~--ri~dd~G~af~~G~vgG~~~~~~~G~rnsp~g----~rl~g~l~~~~~rap~~g~~FAv~G~~ys~~e 77 (164)
T PTZ00236 4 RDLSREPCPD--RIIEDMGGAFSMGCIGGFIWHFLKGMRNSPKG----ERFSGGFYLLRKRAPILGGNFAIWGGLFSTFD 77 (164)
T ss_pred hhhCcCCCch--HHHHhccHHHHHHHHHHHHHHHHHHHHhCCCc----chHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 3455666766 88889999999999999999999999999865 47899999999999999999999999999999
Q ss_pred HHHHHHhccCchhHHHHHHHHHHHHHhhCCChHHHHHhHHHHHHHHHHHHHHHHHHhhhcC
Q 029873 125 SGLIYLRDSDDLLNTVAAGLGTGAIYRAAGGLRSAAVAGAIGGITAAAAVAGKQAVKRYVP 185 (186)
Q Consensus 125 ~~l~~~R~k~D~~Nsv~AG~~TGal~~~~~G~raa~ig~~~G~~la~~~~~~~~~~~r~~~ 185 (186)
|+++++|+|||+||+++||++||++++++.||+++++++++|++++++++++..+++|+.+
T Consensus 78 c~~~~~R~K~D~~Nsi~AG~~TGa~l~~r~G~~~~~~~a~~Gg~~~~~ie~~~i~~~~~~~ 138 (164)
T PTZ00236 78 CTLQYLRGKEDHWNAIASGFFTGGVLAIRGGWRSAVRNAIFGGILLGIIELVSIGMNRRQM 138 (164)
T ss_pred HHHHHHHccCchHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999999999999854
No 4
>TIGR00980 3a0801so1tim17 mitochondrial import inner membrane translocase subunit tim17.
Probab=99.98 E-value=1e-31 Score=216.48 Aligned_cols=135 Identities=19% Similarity=0.319 Sum_probs=127.7
Q ss_pred hhhhhccCCcccchhhhhhhhHHHHhHHHHHHHHhhhcccCCCCchHHHHHHHHHHhhccchhhhhhhHHHHHHHHHHHH
Q 029873 45 EESLNSRRSWGENLQYYTGSGYLSGAVLGAIKGSVEGLRQAEPSDSLKLRVNRVLNSGGQVGRRFGNSLGVLGLIFAGME 124 (186)
Q Consensus 45 ee~~~~~r~~~e~l~~~tG~~yl~G~~~Gg~~G~~~G~~~~~~g~~~k~r~~~~ln~~~k~g~~~g~~~g~~g~~ys~~e 124 (186)
||..+++|.| ++....|.+|.+|++.|+++|+++|++++|.+ .|++.++++++.+++++|++||+|+++|+++|
T Consensus 2 ~~~~r~pcp~--r~~d~~G~af~~G~~~G~~~g~~~G~rnsp~g----~rl~g~l~av~~rap~~g~~Fav~g~lys~~e 75 (170)
T TIGR00980 2 EEYTREPCPY--RILDDFGGAFAMGTIGGSIFQAFKGFRNSPKG----EKLVGAMRAIKTRAPVLGGNFAVWGGLFSTID 75 (170)
T ss_pred cccccCCCcc--hhHHhhhHHHHHHHHHHHHHHHHHHhhcCCcc----chhhHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 5667788888 89999999999999999999999999998754 37889999999999999999999999999999
Q ss_pred HHHHHHhccCchhHHHHHHHHHHHHHhhCCChHHHHHhHHHHHHHHHHHHHHHHHHhhhcC
Q 029873 125 SGLIYLRDSDDLLNTVAAGLGTGAIYRAAGGLRSAAVAGAIGGITAAAAVAGKQAVKRYVP 185 (186)
Q Consensus 125 ~~l~~~R~k~D~~Nsv~AG~~TGal~~~~~G~raa~ig~~~G~~la~~~~~~~~~~~r~~~ 185 (186)
|+++++|+|||+||+++||++||++|++++|+++++.+|++++++.++++....+++|+.+
T Consensus 76 c~i~~~R~KeD~~NsiiAG~~TGa~l~~r~G~~a~~~~aa~gg~~la~ie~~g~~~~~~~~ 136 (170)
T TIGR00980 76 CAVVAIRKKEDPWNSIISGFLTGAALAVRGGPRAMRGSAILGACILAVIEGVGLVLTRWAA 136 (170)
T ss_pred HHHHHHhcccchHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999999999999999999999999999853
No 5
>PF02466 Tim17: Tim17/Tim22/Tim23/Pmp24 family; InterPro: IPR003397 The membrane-embedded multi-protein complexes of mitochondria mediate the transport of nuclear-encoded proteins across and into the outer or inner mitochondrial membranes []. The TOM (translocase of the outer mitochondrial membrane) complex consists of cytosol-exposed receptors and a pore-forming core, and mediates the transport of proteins from the cytosol across and into the outer mitochondrial membrane. A novel protein complex in the outer membrane of mitochondria, called the SAM complex (sorting and assembly machinery), is involved in the biogenesis of beta-barrel proteins of the outer membrane. Two translocases of the inner mitochondrial membrane (TIM22 and TIM23 complexes) mediate protein transport at the inner membrane. The TIM23 complex (a presequence translocase) mediates the transport of presequence-containing proteins across and into the inner membrane. Tim23 and Tim17 form part of this complex. Tim23 forms a pore in the inner membrane. The role of Tim17 is not yet fully understood. The TIM22 complex (a twin-pore carrier translocase) catalyses the insertion of multi-spanning proteins that have internal targeting signals into the inner membrane. The TIM22 complex mediates the membrane insertion of multi-spanning inner-membrane proteins that have internal targeting signals, and it uses the membrane potential as an external driving force. The Tim22 subunit of the mitochondrial import inner membrane translocase is included in this family. This family also includes Pmp24, a peroxisomal membrane protein, and NADH ubiquinone dehydrogenase 1 alpha subunit 11. Pmp24 was previously known as Pmp27 [].
Probab=99.94 E-value=2.6e-26 Score=175.75 Aligned_cols=127 Identities=31% Similarity=0.507 Sum_probs=119.1
Q ss_pred CcccchhhhhhhhHHHHhHHHHHHHHhhhcccCCCCchHHHHHHHHHHhhccchhhhhhhHHHHHHHHHHHHHHHHHHhc
Q 029873 53 SWGENLQYYTGSGYLSGAVLGAIKGSVEGLRQAEPSDSLKLRVNRVLNSGGQVGRRFGNSLGVLGLIFAGMESGLIYLRD 132 (186)
Q Consensus 53 ~~~e~l~~~tG~~yl~G~~~Gg~~G~~~G~~~~~~g~~~k~r~~~~ln~~~k~g~~~g~~~g~~g~~ys~~e~~l~~~R~ 132 (186)
+|.|++++.++.+|+.|+++|++.+.+++....+...+.|+|++.+++.+++++++++++||.++++|+++||.++++|+
T Consensus 1 ~c~~~~~~~~~~g~~~G~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~y~~~~~~l~~~R~ 80 (128)
T PF02466_consen 1 SCPERILDSTGKGFVAGAVFGGFIGAISAFTRPPRGSPLRPRLRSILNAVGRRGPRHGARFGSFGGLYSGIECALERLRG 80 (128)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcHhHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 47789999999999999999999999988665556677888999999999999999999999999999999999999999
Q ss_pred cCchhHHHHHHHHHHHHHhhCCChHHHHHhHHHHHHHHHHHHHHHHH
Q 029873 133 SDDLLNTVAAGLGTGAIYRAAGGLRSAAVAGAIGGITAAAAVAGKQA 179 (186)
Q Consensus 133 k~D~~Nsv~AG~~TGal~~~~~G~raa~ig~~~G~~la~~~~~~~~~ 179 (186)
|||+||+++||++||++|+.+.|++.++.+++++++++++++..+++
T Consensus 81 k~D~~N~~~aG~~aGa~~~~~~g~~~~~~~~~~~a~~~~~~~~~~~~ 127 (128)
T PF02466_consen 81 KDDPWNSAIAGAAAGAVLGLRSGPRGMASGAALGAAFAAAVEYYGRM 127 (128)
T ss_pred ccccchhHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999988764
No 6
>KOG1652 consensus Mitochondrial import inner membrane translocase, subunit TIM17 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=2e-26 Score=185.43 Aligned_cols=134 Identities=20% Similarity=0.319 Sum_probs=126.7
Q ss_pred hhhhhccCCcccchhhhhhhhHHHHhHHHHHHHHhhhcccCCCCchHHHHHHHHHHhhccchhhhhhhHHHHHHHHHHHH
Q 029873 45 EESLNSRRSWGENLQYYTGSGYLSGAVLGAIKGSVEGLRQAEPSDSLKLRVNRVLNSGGQVGRRFGNSLGVLGLIFAGME 124 (186)
Q Consensus 45 ee~~~~~r~~~e~l~~~tG~~yl~G~~~Gg~~G~~~G~~~~~~g~~~k~r~~~~ln~~~k~g~~~g~~~g~~g~~ys~~e 124 (186)
+|..+++|.| ++.-..|.+|.+|.+.|.++++++|++|+|.|. |+...++.+..+.+..|++|++|+++|+.+|
T Consensus 2 ~e~sr~pcp~--riv~d~g~afamg~igG~~f~~ikG~~nap~G~----r~~gg~~av~~~ap~~ggsFAvwgglfSt~d 75 (183)
T KOG1652|consen 2 MEYSREPCPI--RIVDDCGGAFAMGTIGGSVFQLIKGFRNAPSGA----RLVGGISAVKMRAPQSGGSFAVWGGLFSTVD 75 (183)
T ss_pred CcccCCCCCc--eeeccccchhhhcccccceeeeeeeeecCCccc----ccccchhhhhccCcccccceeeeechhhHHH
Confidence 4556788888 888999999999999999999999999998764 8889999999999999999999999999999
Q ss_pred HHHHHHhccCchhHHHHHHHHHHHHHhhCCChHHHHHhHHHHHHHHHHHHHHHHHHhhhc
Q 029873 125 SGLIYLRDSDDLLNTVAAGLGTGAIYRAAGGLRSAAVAGAIGGITAAAAVAGKQAVKRYV 184 (186)
Q Consensus 125 ~~l~~~R~k~D~~Nsv~AG~~TGal~~~~~G~raa~ig~~~G~~la~~~~~~~~~~~r~~ 184 (186)
|++..+|+|||.||++++|++||+++..+.|+++++-++++++++.+.++.....++|+.
T Consensus 76 C~Lv~~R~KeDpwNsivsGa~TGg~La~r~g~~a~~~sa~~~g~~lamieg~g~~~t~~~ 135 (183)
T KOG1652|consen 76 CALVAIRKKEDPWNSIVSGAATGGLLAARGGPKAMLTSAITGGLLLAMIEGLGIQVTKIA 135 (183)
T ss_pred HHHHHHhcccchHHHHHHHhhccceeeccccHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999873
No 7
>KOG3225 consensus Mitochondrial import inner membrane translocase, subunit TIM22 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=1.3e-22 Score=160.48 Aligned_cols=123 Identities=22% Similarity=0.221 Sum_probs=106.2
Q ss_pred cCCcccchhhhhhhhHHHHhHHHHHHHHhhhcccCCCCc---hHHHHHHHHHHhhccchhhhhhhHHHHHHHHHHHHHHH
Q 029873 51 RRSWGENLQYYTGSGYLSGAVLGAIKGSVEGLRQAEPSD---SLKLRVNRVLNSGGQVGRRFGNSLGVLGLIFAGMESGL 127 (186)
Q Consensus 51 ~r~~~e~l~~~tG~~yl~G~~~Gg~~G~~~G~~~~~~g~---~~k~r~~~~ln~~~k~g~~~g~~~g~~g~~ys~~e~~l 127 (186)
-..| ++|.+++..+.|+|+.+|+++|++.+..+....+ ..++-+.++++.++++....+++|+++|++|++.||.+
T Consensus 36 le~~-n~c~~Ka~~sgV~GfglG~~~GlFlas~d~~~~dP~i~~~~ar~q~~kdMg~r~~s~~knF~~iGlvfsg~Ec~i 114 (168)
T KOG3225|consen 36 LEEE-NSCAVKAVKSGVTGFGLGGAFGLFLASLDTQPNDPTIYRMPARKQVAKDMGQRSGSYAKNFAIIGLVFSGVECLI 114 (168)
T ss_pred HHHh-cchhHHHHHhhccccchhhhHHhhhhhcccCCCCCchhhhhhHHHHHHHHHhhhcchhhhhhhhhhhehhHHHHH
Confidence 3444 3789999999999999999999999988743222 22344567799999999999999999999999999999
Q ss_pred HHHhccCchhHHHHHHHHHHHHHhhCCChHHHHHhHHHHHHHHHHHH
Q 029873 128 IYLRDSDDLLNTVAAGLGTGAIYRAAGGLRSAAVAGAIGGITAAAAV 174 (186)
Q Consensus 128 ~~~R~k~D~~Nsv~AG~~TGal~~~~~G~raa~ig~~~G~~la~~~~ 174 (186)
|++|.|+||+|+++||++||+.+..++||+++++||+..++++++++
T Consensus 115 E~~RAK~D~~NgaiaG~vtGg~l~~raGp~a~~~G~agfa~fS~~id 161 (168)
T KOG3225|consen 115 ESFRAKSDWYNGAIAGCVTGGSLGYRAGPKAAAIGCAGFAAFSAAID 161 (168)
T ss_pred HHHHhhhchhcceeeeeeeccchhhcccchhhhhchhHHHHHHHHHH
Confidence 99999999999999999999999999999999999998777666554
No 8
>COG5596 TIM22 Mitochondrial import inner membrane translocase, subunit TIM22 [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=3.2e-22 Score=161.89 Aligned_cols=146 Identities=29% Similarity=0.400 Sum_probs=132.3
Q ss_pred ccccCCCCCCcccchhhhh----------hccCCcccchhhhhhhhHHHHhHHHHHHHHhhhcccCCCCchHHHHHHHHH
Q 029873 30 QNLYNLPTSPEFLFHEESL----------NSRRSWGENLQYYTGSGYLSGAVLGAIKGSVEGLRQAEPSDSLKLRVNRVL 99 (186)
Q Consensus 30 ~~~~~~~~~pe~lf~ee~~----------~~~r~~~e~l~~~tG~~yl~G~~~Gg~~G~~~G~~~~~~g~~~k~r~~~~l 99 (186)
++|-++-+.-+|+.+++.. ...+.|.+.++|.|+..++.|.-+|++|| |+.+.....++++|++..+
T Consensus 33 ~~l~~~~~~~~~~~i~k~~~s~l~G~~~g~~~g~f~ssl~y~t~~~~~~g~nfg~vwG---gl~~~i~~~~~r~q~~~~~ 109 (191)
T COG5596 33 EKLADFMKAFSYSCIGKSALSGLKGFRLGGPSGGFSSSLAYGTGLVHLLGLNFGGVWG---GLFSTIDCTPFRLQLKEQL 109 (191)
T ss_pred hHHhhhccchhhcchhhhhhhcccccccccccccchhhcccccccccccCcccccccc---ceeeccccchHHHHHhhcc
Confidence 5556666777777777762 45688999999999999999999999999 7777666778999999999
Q ss_pred HhhccchhhhhhhHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHhhCCChHHHHHhHHHHHHHHHHHHHHHH
Q 029873 100 NSGGQVGRRFGNSLGVLGLIFAGMESGLIYLRDSDDLLNTVAAGLGTGAIYRAAGGLRSAAVAGAIGGITAAAAVAGKQ 178 (186)
Q Consensus 100 n~~~k~g~~~g~~~g~~g~~ys~~e~~l~~~R~k~D~~Nsv~AG~~TGal~~~~~G~raa~ig~~~G~~la~~~~~~~~ 178 (186)
|.++++|+..|+++|++|+.|+++||.++.+|+|||+.|+|.+|+.||+.|++.+|++++.++++..+++++.|+..++
T Consensus 110 ~n~~~rg~ftG~n~GvlGl~y~~~ns~I~~~r~k~d~~~~iaaG~~TGa~~~~~~g~qa~~~~~a~~aa~s~~~~~~~~ 188 (191)
T COG5596 110 NNAGKRGFFTGKNLGVLGLIYAGINSIITALRAKHDIANAIAAGAFTGAALASSAGPQAMPMGGAGFAAFSAGITLAMK 188 (191)
T ss_pred ccccccccccccccceeeeecccchhhhhhhhhccccchhhhhhhhhhHHHHhhccccccccCccchhhhhhhHHhhhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999887665
No 9
>KOG4608 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.32 E-value=5.2e-13 Score=112.27 Aligned_cols=161 Identities=22% Similarity=0.262 Sum_probs=119.3
Q ss_pred CCCCCCCCCCCCCCCcccccCCCCCCcccchhhhhhcc-CCcccchhhhh-hhhHHHHhHHHHHHHHhhhcccCCC----
Q 029873 14 HNYRRYHPYQQFDVPIQNLYNLPTSPEFLFHEESLNSR-RSWGENLQYYT-GSGYLSGAVLGAIKGSVEGLRQAEP---- 87 (186)
Q Consensus 14 ~~~~~~~py~~~~~~~~~~~~~~~~pe~lf~ee~~~~~-r~~~e~l~~~t-G~~yl~G~~~Gg~~G~~~G~~~~~~---- 87 (186)
+.++.+.||.-...||. |.+|-|= ++..+ -+|.-+.++.+ -++|++|.+.|++-+...+-.+...
T Consensus 36 ~e~~~~k~~eave~ppe------Tgwerlk---~lfg~dis~e~a~v~~v~a~~flgG~~~ggat~s~~A~~~y~~nsqa 106 (270)
T KOG4608|consen 36 EERQKRKPYEAVEYPPE------TGWERLK---ELFGKDISKELANVCKVAATAFLGGWVYGGATASIHAKQQYIENSQA 106 (270)
T ss_pred HhhcccccccccCCCCc------cchHHHH---HHhCCCcchhhHHHHHHHHHhhhhheeeccchHhHHHHHHHHhccHH
Confidence 44567788876654443 5555221 01111 25544455555 4578899999998888776654321
Q ss_pred ------CchHHHHHHHHHHhhccchhhhhhhHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHhhCCChHHHHH
Q 029873 88 ------SDSLKLRVNRVLNSGGQVGRRFGNSLGVLGLIFAGMESGLIYLRDSDDLLNTVAAGLGTGAIYRAAGGLRSAAV 161 (186)
Q Consensus 88 ------g~~~k~r~~~~ln~~~k~g~~~g~~~g~~g~~ys~~e~~l~~~R~k~D~~Nsv~AG~~TGal~~~~~G~raa~i 161 (186)
-+-.|....+....+.|.|.+||.++|.+...|.++...+..||+|+|.||-++||++||++|+..-|++.++.
T Consensus 107 ~ky~sh~davk~~~d~air~farGgf~~G~R~alfttSff~l~t~l~vyRgk~a~~~fvaaga~tgsvF~~~~gL~g~aa 186 (270)
T KOG4608|consen 107 EKYHSHFDAVKSAHDAAIRGFARGGFRWGWRTALFTTSFFTLNTSLNVYRGKDALSHFVAAGAVTGSVFRINVGLRGLAA 186 (270)
T ss_pred HHhhChHHHHHHHHHHHHHHHhhccccceeEEeeehhhHHHHHHHHHHHcCchhhhhhhccccceeeeEEeehhhHHHhh
Confidence 12233344567778899999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHhhh
Q 029873 162 AGAIGGITAAAAVAGKQAVKRY 183 (186)
Q Consensus 162 g~~~G~~la~~~~~~~~~~~r~ 183 (186)
+.++|+++++...+.-.++.++
T Consensus 187 ~vilG~~lG~tv~~~l~l~q~a 208 (270)
T KOG4608|consen 187 GVILGALLGTTVGGLLMLFQKA 208 (270)
T ss_pred cceeehhhcchHHHHHHHHHHH
Confidence 9999888888777665555443
No 10
>COG5596 TIM22 Mitochondrial import inner membrane translocase, subunit TIM22 [Posttranslational modification, protein turnover, chaperones]
Probab=97.09 E-value=8.9e-05 Score=60.75 Aligned_cols=97 Identities=19% Similarity=0.207 Sum_probs=74.2
Q ss_pred chhhhhhhhHHHHhHHHHHHHHhhhcccCCCCchHHHHHHHHHHhhccchhhhhhhHH-HHHHHHHHHHHHHHHHhccCc
Q 029873 57 NLQYYTGSGYLSGAVLGAIKGSVEGLRQAEPSDSLKLRVNRVLNSGGQVGRRFGNSLG-VLGLIFAGMESGLIYLRDSDD 135 (186)
Q Consensus 57 ~l~~~tG~~yl~G~~~Gg~~G~~~G~~~~~~g~~~k~r~~~~ln~~~k~g~~~g~~~g-~~g~~ys~~e~~l~~~R~k~D 135 (186)
+...+-+.++-.+.+.+.++.-++|++..++.. +...-+...+.+.+-.|.+|| +||.+++.++|....+|.++|
T Consensus 33 ~~l~~~~~~~~~~~i~k~~~s~l~G~~~g~~~g----~f~ssl~y~t~~~~~~g~nfg~vwGgl~~~i~~~~~r~q~~~~ 108 (191)
T COG5596 33 EKLADFMKAFSYSCIGKSALSGLKGFRLGGPSG----GFSSSLAYGTGLVHLLGLNFGGVWGGLFSTIDCTPFRLQLKEQ 108 (191)
T ss_pred hHHhhhccchhhcchhhhhhhcccccccccccc----cchhhcccccccccccCccccccccceeeccccchHHHHHhhc
Confidence 444455555556778888888888888765432 223445555666777888888 999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHhhCCChH
Q 029873 136 LLNTVAAGLGTGAIYRAAGGLR 157 (186)
Q Consensus 136 ~~Nsv~AG~~TGal~~~~~G~r 157 (186)
.||....|+.||..+....+++
T Consensus 109 ~~n~~~rg~ftG~n~GvlGl~y 130 (191)
T COG5596 109 LNNAGKRGFFTGKNLGVLGLIY 130 (191)
T ss_pred cccccccccccccccceeeeec
Confidence 9999999999999887765443
No 11
>TIGR00983 3a0801s02tim23 mitochondrial import inner membrane translocase subunit tim23.
Probab=96.36 E-value=0.026 Score=44.95 Aligned_cols=100 Identities=21% Similarity=0.092 Sum_probs=58.7
Q ss_pred ccCCCCCCcccchhhhhh--ccCCcccchhhh-hhhhHHHHhHHHHHHHHhhhcccCCCCchHHHHHHHHHHhhccchhh
Q 029873 32 LYNLPTSPEFLFHEESLN--SRRSWGENLQYY-TGSGYLSGAVLGAIKGSVEGLRQAEPSDSLKLRVNRVLNSGGQVGRR 108 (186)
Q Consensus 32 ~~~~~~~pe~lf~ee~~~--~~r~~~e~l~~~-tG~~yl~G~~~Gg~~G~~~G~~~~~~g~~~k~r~~~~ln~~~k~g~~ 108 (186)
||.+|++|||||+||... ++..=..+.... .=....+..+.|.+.|...|+.+--...+.......-+|.+-+...+
T Consensus 1 l~~l~~~~~~l~~~~~~~~~~~g~~~~R~~~e~~~~~~G~ay~~G~~~Gg~~Gl~~G~~~~~~~~~~k~rln~~ln~~~~ 80 (149)
T TIGR00983 1 LAPLDKDPEYLVQEEDELSLLTGANPSRGWFEDLCFGTGTCYLTGLAIGALNGLRLGLKETQSMPWTKLRLNQILNMVTR 80 (149)
T ss_pred CCCCCCCcHHHcCcchhhcCCCCCCCCCChhhhhhhhHhHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHh
Confidence 577999999999998631 111101122222 22334455788999999999986432222212223456666666666
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHh
Q 029873 109 FGNSLGVLGLIFAGMESGLIYLR 131 (186)
Q Consensus 109 ~g~~~g~~g~~ys~~e~~l~~~R 131 (186)
-+-++|---++...+=++++..=
T Consensus 81 ~g~~~G~~~g~~g~lys~~e~~i 103 (149)
T TIGR00983 81 RGPFWGNTLGILALVYNGINSII 103 (149)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666665544
No 12
>PF02466 Tim17: Tim17/Tim22/Tim23/Pmp24 family; InterPro: IPR003397 The membrane-embedded multi-protein complexes of mitochondria mediate the transport of nuclear-encoded proteins across and into the outer or inner mitochondrial membranes []. The TOM (translocase of the outer mitochondrial membrane) complex consists of cytosol-exposed receptors and a pore-forming core, and mediates the transport of proteins from the cytosol across and into the outer mitochondrial membrane. A novel protein complex in the outer membrane of mitochondria, called the SAM complex (sorting and assembly machinery), is involved in the biogenesis of beta-barrel proteins of the outer membrane. Two translocases of the inner mitochondrial membrane (TIM22 and TIM23 complexes) mediate protein transport at the inner membrane. The TIM23 complex (a presequence translocase) mediates the transport of presequence-containing proteins across and into the inner membrane. Tim23 and Tim17 form part of this complex. Tim23 forms a pore in the inner membrane. The role of Tim17 is not yet fully understood. The TIM22 complex (a twin-pore carrier translocase) catalyses the insertion of multi-spanning proteins that have internal targeting signals into the inner membrane. The TIM22 complex mediates the membrane insertion of multi-spanning inner-membrane proteins that have internal targeting signals, and it uses the membrane potential as an external driving force. The Tim22 subunit of the mitochondrial import inner membrane translocase is included in this family. This family also includes Pmp24, a peroxisomal membrane protein, and NADH ubiquinone dehydrogenase 1 alpha subunit 11. Pmp24 was previously known as Pmp27 [].
Probab=93.17 E-value=0.52 Score=35.49 Aligned_cols=125 Identities=23% Similarity=0.058 Sum_probs=84.4
Q ss_pred hhhhhhhhHHHHhHHHHHHHHhhhcccCCCCchHHHHHHHHHHhhccchhhhhhhHHHHHHHHHHHHHHHHHHhccCchh
Q 029873 58 LQYYTGSGYLSGAVLGAIKGSVEGLRQAEPSDSLKLRVNRVLNSGGQVGRRFGNSLGVLGLIFAGMESGLIYLRDSDDLL 137 (186)
Q Consensus 58 l~~~tG~~yl~G~~~Gg~~G~~~G~~~~~~g~~~k~r~~~~ln~~~k~g~~~g~~~g~~g~~ys~~e~~l~~~R~k~D~~ 137 (186)
|..++..+.+.|...|.++|.+.+..+...........+..++.+-+.-.+.+.+++..-+.+.++=++++..=++-=-.
T Consensus 2 c~~~~~~~~~~g~~~G~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~y~~~~~~l~~~R~k 81 (128)
T PF02466_consen 2 CPERILDSTGKGFVAGAVFGGFIGAISAFTRPPRGSPLRPRLRSILNAVGRRGPRHGARFGSFGGLYSGIECALERLRGK 81 (128)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcHhHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 45567888899999999999998887542211111223445666666665566667777777777777776655443346
Q ss_pred HHHHHHHHHHHHHhhCCChHHHHHhHHHHHHHHHHHHHHHHHHhh
Q 029873 138 NTVAAGLGTGAIYRAAGGLRSAAVAGAIGGITAAAAVAGKQAVKR 182 (186)
Q Consensus 138 Nsv~AG~~TGal~~~~~G~raa~ig~~~G~~la~~~~~~~~~~~r 182 (186)
+-..-.+++|++=..--+.+.-..+.+.++++.++....=..++|
T Consensus 82 ~D~~N~~~aG~~aGa~~~~~~g~~~~~~~~~~~a~~~~~~~~~~~ 126 (128)
T PF02466_consen 82 DDPWNSAIAGAAAGAVLGLRSGPRGMASGAALGAAFAAAVEYYGR 126 (128)
T ss_pred cccchhHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHhc
Confidence 778888888888877777777777777777776666655544444
No 13
>KOG4096 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.05 E-value=0.19 Score=35.37 Aligned_cols=63 Identities=19% Similarity=0.255 Sum_probs=39.0
Q ss_pred chhhhhhhhHHHHhHHHHHHHHhhhcccCCCCchHHHHHHHHHHhhccchhhhhhhHHHHHHHHHHHHHH
Q 029873 57 NLQYYTGSGYLSGAVLGAIKGSVEGLRQAEPSDSLKLRVNRVLNSGGQVGRRFGNSLGVLGLIFAGMESG 126 (186)
Q Consensus 57 ~l~~~tG~~yl~G~~~Gg~~G~~~G~~~~~~g~~~k~r~~~~ln~~~k~g~~~g~~~g~~g~~ys~~e~~ 126 (186)
++-...-+++.+|...|.++|-++++|.-+++ ...++.++|.-...+.+||.+-.+=+++.|.
T Consensus 10 KikmG~~mG~avG~a~G~lfGgf~~lR~g~~g-------~~~vr~iGkt~~~SagtFG~FM~igs~Ir~~ 72 (75)
T KOG4096|consen 10 KIKMGLMMGGAVGGATGALFGGFAALRYGPRG-------RGLVRTIGKTMLQSAGTFGLFMGIGSGIRCG 72 (75)
T ss_pred HHHHHHHHHhhhhhhhhhhccchhheeecCCh-------hHHHHHHhHHHHhccchhhhhhhhhhheecC
Confidence 33333444555566666677777777754432 4566667777777777888776666665553
No 14
>KOG1398 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.39 E-value=0.86 Score=41.77 Aligned_cols=46 Identities=24% Similarity=0.286 Sum_probs=41.2
Q ss_pred cchhhhhhhHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Q 029873 104 QVGRRFGNSLGVLGLIFAGMESGLIYLRDSDDLLNTVAAGLGTGAI 149 (186)
Q Consensus 104 k~g~~~g~~~g~~g~~ys~~e~~l~~~R~k~D~~Nsv~AG~~TGal 149 (186)
|...++|-=+|.+.++|.++.|.+.+.+.+||..|+++||.+++.-
T Consensus 297 renlqlg~FlgsfvfIfkatsC~lr~v~n~dd~l~aifAgglAs~S 342 (460)
T KOG1398|consen 297 RENLQLGSFLGSFVFIFKATSCALRKVANKDDKLVAIFAGGLASLS 342 (460)
T ss_pred cccchhhHHHHHHHHHHHhHHHHHHHhccCcHHHHHHHHhhhhhhe
Confidence 5566677778999999999999999999999999999999998863
No 15
>PF10247 Romo1: Reactive mitochondrial oxygen species modulator 1; InterPro: IPR018450 The majority of endogenous reactive oxygen species (ROS) in cells are produced by the mitochondrial respiratory chain. An increase or imbalance in ROS alters the intracellular redox homeostasis, triggers DNA damage, and may contribute to cancer development and progression. This entry contains the mitochondrial protein, reactive oxygen species modulator 1 (Romo1), that is responsible for increasing the level of ROS in cells. In various cancer cell lines with elevated levels of ROS there is also an increased abundance of Romo1 []. Increased Romo1 expression can have a number of other affects including: inducing premature senescence of cultured human fibroblasts [, ] and increased resistance to 5-fluorouracil [].
Probab=86.61 E-value=0.77 Score=31.92 Aligned_cols=49 Identities=20% Similarity=0.291 Sum_probs=25.9
Q ss_pred hhHHHHhHHHHHHHHhhhcccCCCCchHHHHHHHHHHhhccchhhhhhhHHHHHHH
Q 029873 64 SGYLSGAVLGAIKGSVEGLRQAEPSDSLKLRVNRVLNSGGQVGRRFGNSLGVLGLI 119 (186)
Q Consensus 64 ~~yl~G~~~Gg~~G~~~G~~~~~~g~~~k~r~~~~ln~~~k~g~~~g~~~g~~g~~ 119 (186)
++..+|.+.|.++|.+..++.-++ -+..++.++|.-...|.+||.+-.+
T Consensus 13 MG~~VG~~~G~l~G~~~~~r~g~~-------~~~~~~~lg~~~l~sg~tFG~Fm~i 61 (67)
T PF10247_consen 13 MGGAVGGAFGALFGTFSAFRYGAR-------GRGLMRTLGKYMLGSGATFGFFMSI 61 (67)
T ss_pred HhhHHHhhhhhhhhhHHHhccCCC-------CcchHhHHhHHHhcchhHHHHHHhh
Confidence 344445555555555555554322 2445556666666666666665433
No 16
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=83.59 E-value=1.4 Score=30.42 Aligned_cols=39 Identities=21% Similarity=0.294 Sum_probs=22.9
Q ss_pred HHHHhHHHHHHHHhhhcccCC-CCchHHHHHHHHHHhhcc
Q 029873 66 YLSGAVLGAIKGSVEGLRQAE-PSDSLKLRVNRVLNSGGQ 104 (186)
Q Consensus 66 yl~G~~~Gg~~G~~~G~~~~~-~g~~~k~r~~~~ln~~~k 104 (186)
|+.|+++|++.|..-|+..+| .|...|.++....+.+..
T Consensus 1 F~~g~l~Ga~~Ga~~glL~aP~sG~e~R~~l~~~~~~~~~ 40 (74)
T PF12732_consen 1 FLLGFLAGAAAGAAAGLLFAPKSGKETREKLKDKAEDLKD 40 (74)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHH
Confidence 455666666666666666665 355555566655555443
No 17
>PF13436 Gly-zipper_OmpA: Glycine-zipper containing OmpA-like membrane domain
Probab=79.33 E-value=4.6 Score=30.69 Aligned_cols=45 Identities=33% Similarity=0.347 Sum_probs=31.3
Q ss_pred CchhHHHHHHHHHHHHHhhCCC--hHHHHHhHHHHHHHHHHHHHHHH
Q 029873 134 DDLLNTVAAGLGTGAIYRAAGG--LRSAAVAGAIGGITAAAAVAGKQ 178 (186)
Q Consensus 134 ~D~~Nsv~AG~~TGal~~~~~G--~raa~ig~~~G~~la~~~~~~~~ 178 (186)
++.....+.|++.|++...-.| .+.+++|+++|+++.+++-....
T Consensus 50 ~~~~~ga~~GA~~GA~~Ga~~G~~~~ga~~GAa~Ga~~G~~~g~~~~ 96 (118)
T PF13436_consen 50 ENTAGGAAIGAAAGAAIGAIIGGNGRGAAIGAAAGAAVGAAAGAARG 96 (118)
T ss_pred hhHHHHHHHHHHHHHHHHhhcCCCccchHHHHHHHHHHHHHhhhhhh
Confidence 4455556677777777777544 47888888888888777665543
No 18
>PF10439 Bacteriocin_IIc: Bacteriocin class II with double-glycine leader peptide; InterPro: IPR019493 Bacteriocins are proteinaceous toxins produced by bacteria to inhibit the growth of similar or closely related strains. The producer bacteria are protected from the effects of their own bacteriocins by production of a specific immunity protein which is co-transcribed with the genes encoding the bacteriocins, e.g. IPR015046 from INTERPRO. The bacteriocins are structurally more specific than their immunity-protein counterparts. Typically, production of the bacteriocin gene is from within an operon carrying up to 6 genes including a typical two-component regulatory system (R and H), a small peptide pheromone (C), and a dedicated ABC transporter (A and -B) as well as an immunity protein []. The ABC transporter is thought to recognise the N termini of both the pheromone and the bacteriocins and to transport these peptides across the cytoplasmic membrane, concurrent with cleavage at the conserved double-glycine motif. Cleaved extracellular C can then bind to the sensor kinase, H, resulting in activation of R and up-regulation of the entire gene cluster via binding to consensus sequences within each promoter []. It seems likely that the whole regulon is carried on a transmissible plasmid which is passed between closely related Firmicute species since many clinical isolates from different Firmicutes can produce at least two bacteriocins, and the same bacteriocins can be produced by different species. The proteins in this entry include amylovorin-L, lactacin-F and salivaricin CRL 1328, all of them class IIb two-peptide bacteriocins.
Probab=71.70 E-value=10 Score=25.66 Aligned_cols=37 Identities=27% Similarity=0.388 Sum_probs=25.3
Q ss_pred CchhHHHHHHHHHHHHHhhCCCh-HHHHHhHHHHHHHH
Q 029873 134 DDLLNTVAAGLGTGAIYRAAGGL-RSAAVAGAIGGITA 170 (186)
Q Consensus 134 ~D~~Nsv~AG~~TGal~~~~~G~-raa~ig~~~G~~la 170 (186)
.+.+..++.++++|++.....|+ -.+++|+++|+.+.
T Consensus 23 ~~~~~~~~~~~~~G~~~G~~~g~~~g~~~Ga~~G~~~G 60 (65)
T PF10439_consen 23 GNCVGGVGGGAAGGAAAGAAGGPPVGAVAGAIVGAAVG 60 (65)
T ss_pred HHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHH
Confidence 34566788889999999888877 45555555554443
No 19
>PF13488 Gly-zipper_Omp: Glycine zipper
Probab=68.27 E-value=15 Score=23.49 Aligned_cols=34 Identities=38% Similarity=0.447 Sum_probs=22.9
Q ss_pred HHHHHHHHHHhhCCC--hHHHHHhHHHHHHHHHHHH
Q 029873 141 AAGLGTGAIYRAAGG--LRSAAVAGAIGGITAAAAV 174 (186)
Q Consensus 141 ~AG~~TGal~~~~~G--~raa~ig~~~G~~la~~~~ 174 (186)
.-|++.|+++....+ .+.+++++++|+++.+.+.
T Consensus 4 ~iGA~~Ga~iG~~~g~~~~ga~iGa~vGa~~G~~ig 39 (46)
T PF13488_consen 4 AIGAAAGAAIGAATGGPGKGAAIGAAVGAAVGAAIG 39 (46)
T ss_pred HHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHH
Confidence 345666666655433 4788888888888877643
No 20
>PTZ00236 mitochondrial import inner membrane translocase subunit tim17; Provisional
Probab=59.06 E-value=96 Score=25.12 Aligned_cols=128 Identities=13% Similarity=0.044 Sum_probs=76.2
Q ss_pred hccCCcccchhhhhhhhHHHHhHHHHHHHHhhhcccCCCCchHHHHHHHHHHhhccchhhhhhhHHHHHHHHHHHHHHHH
Q 029873 49 NSRRSWGENLQYYTGSGYLSGAVLGAIKGSVEGLRQAEPSDSLKLRVNRVLNSGGQVGRRFGNSLGVLGLIFAGMESGLI 128 (186)
Q Consensus 49 ~~~r~~~e~l~~~tG~~yl~G~~~Gg~~G~~~G~~~~~~g~~~k~r~~~~ln~~~k~g~~~g~~~g~~g~~ys~~e~~l~ 128 (186)
.+-|.+ |++--.-.++.+.|.+.+.+.|+......-.... -++.+-.....-+-.+|---+++.++.+.++..-.
T Consensus 11 cp~ri~-dd~G~af~~G~vgG~~~~~~~G~rnsp~g~rl~g----~l~~~~~rap~~g~~FAv~G~~ys~~ec~~~~~R~ 85 (164)
T PTZ00236 11 CPDRII-EDMGGAFSMGCIGGFIWHFLKGMRNSPKGERFSG----GFYLLRKRAPILGGNFAIWGGLFSTFDCTLQYLRG 85 (164)
T ss_pred CchHHH-HhccHHHHHHHHHHHHHHHHHHHHhCCCcchHHH----HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 344555 2343344556677888888888887765432111 11122212222233344444667777777776654
Q ss_pred HHhccCchhHHHHHHHHHHHHHhhCCChHHHHHhHHHHHHHHHHHHHHHHHHh
Q 029873 129 YLRDSDDLLNTVAAGLGTGAIYRAAGGLRSAAVAGAIGGITAAAAVAGKQAVK 181 (186)
Q Consensus 129 ~~R~k~D~~Nsv~AG~~TGal~~~~~G~raa~ig~~~G~~la~~~~~~~~~~~ 181 (186)
+-=-..-.+-..+.|++-++=-..++=.+++++|+++.+++.++..++++.+.
T Consensus 86 K~D~~Nsi~AG~~TGa~l~~r~G~~~~~~~a~~Gg~~~~~ie~~~i~~~~~~~ 138 (164)
T PTZ00236 86 KEDHWNAIASGFFTGGVLAIRGGWRSAVRNAIFGGILLGIIELVSIGMNRRQM 138 (164)
T ss_pred cCchHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 43335566777777777655544544577888899999988888888876654
No 21
>PF05818 TraT: Enterobacterial TraT complement resistance protein; InterPro: IPR008874 The traT gene is one of the F factor transfer genes and encodes an outer membrane protein which is involved in interactions between Escherichia coli and its surroundings []. The protein plays a role in preventing unproductive conjugation between bacteria carrying like plasmids.; GO: 0046999 regulation of conjugation, 0019867 outer membrane
Probab=57.40 E-value=17 Score=30.80 Aligned_cols=35 Identities=34% Similarity=0.435 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHhh-CCChHHHHHh-HHHHHHHHHHH
Q 029873 139 TVAAGLGTGAIYRA-AGGLRSAAVA-GAIGGITAAAA 173 (186)
Q Consensus 139 sv~AG~~TGal~~~-~~G~raa~ig-~~~G~~la~~~ 173 (186)
..++|+++|+.... ..+...+++| ++.|++++.+.
T Consensus 89 ga~~Ga~~G~~~g~~~~~~~g~~~G~GlaGalig~~a 125 (215)
T PF05818_consen 89 GALAGAATGAAIGAYNSGSAGAAIGAGLAGALIGMIA 125 (215)
T ss_pred hHHHHhHHhhhhccccCCccchhhhhhHHHhHHHHHH
Confidence 45666666666654 3566667777 66555555544
No 22
>PF11981 DUF3482: Domain of unknown function (DUF3482); InterPro: IPR021871 This presumed domain is functionally uncharacterised. This domain is found in bacteria and eukaryotes. This domain is typically between 289 to 301 amino acids in length. This domain is found associated with PF01926 from PFAM.
Probab=56.94 E-value=21 Score=31.40 Aligned_cols=40 Identities=33% Similarity=0.360 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHhhCCChHHHHHhHHHHHHHHHHHHHHHH
Q 029873 139 TVAAGLGTGAIYRAAGGLRSAAVAGAIGGITAAAAVAGKQ 178 (186)
Q Consensus 139 sv~AG~~TGal~~~~~G~raa~ig~~~G~~la~~~~~~~~ 178 (186)
.+++|+++|+-.=...|=-....|+++|+++++++...+.
T Consensus 151 GaaaGAa~GagiDl~tgG~SLG~gaaiGal~Gg~~~~~~~ 190 (292)
T PF11981_consen 151 GAAAGAAAGAGIDLATGGLSLGAGAAIGALAGGAWQGGRR 190 (292)
T ss_pred hHHHHHHHhHHHHHHhhhhhhHHHHHHHHHHHHHHhhhhh
Confidence 5667777777655544444455566666666666655444
No 23
>TIGR03789 pdsO proteobacterial sortase system OmpA family protein. A newly defined histidine kinase (TIGR03785) and response regulator (TIGR03787) gene pair occurs exclusively in Proteobacteria, mostly of marine origin, nearly all of which contain a subfamily 6 sortase (TIGR03784) and its single dedicated target protein (TIGR03788) adjacent to to the sortase. This protein family shows up in only in those species with the histidine kinase/response regulator gene pair, and often adjacent to that pair. It belongs to the OmpA protein family (pfam00691). Its function is unknown. We assign the gene symbol pdsO, for Proteobacterial Dedicated Sortase system OmpA family protein.
Probab=56.14 E-value=14 Score=31.67 Aligned_cols=35 Identities=37% Similarity=0.647 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHhh-CCChHHHHHhHHHHHHHHHHH
Q 029873 139 TVAAGLGTGAIYRA-AGGLRSAAVAGAIGGITAAAA 173 (186)
Q Consensus 139 sv~AG~~TGal~~~-~~G~raa~ig~~~G~~la~~~ 173 (186)
..+.|+.+|++... -.||..+++|+++|++++..+
T Consensus 42 ~~~~g~~~ga~~g~~~gg~~G~~~G~~~G~~~g~~~ 77 (239)
T TIGR03789 42 EALIGLGSGALLGALVGGPVGAIIGGITGGLIGQAV 77 (239)
T ss_pred chhhhHHHHHHHhhhhccHHHHHHHHHHHHHhhhhc
Confidence 34447777777775 468888888888888877654
No 24
>PF13441 Gly-zipper_YMGG: YMGG-like Gly-zipper
Probab=55.22 E-value=11 Score=24.14 Aligned_cols=34 Identities=35% Similarity=0.505 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHhhC--CChHHHHHhHHHHHHHHHHH
Q 029873 140 VAAGLGTGAIYRAA--GGLRSAAVAGAIGGITAAAA 173 (186)
Q Consensus 140 v~AG~~TGal~~~~--~G~raa~ig~~~G~~la~~~ 173 (186)
...|+.+|++...- .+.+.+++++++|++...++
T Consensus 7 A~iGA~~GA~iG~~~g~~~~GA~iGA~~Ga~~G~~~ 42 (45)
T PF13441_consen 7 AAIGAAAGAVIGAIIGNGGKGAAIGAAAGALAGAAI 42 (45)
T ss_pred HHHHHHHHHHHHHhhCCCcccchhhhhhhhhhhhhh
Confidence 34455555555543 34788888888888776654
No 25
>TIGR00980 3a0801so1tim17 mitochondrial import inner membrane translocase subunit tim17.
Probab=54.72 E-value=47 Score=27.01 Aligned_cols=111 Identities=12% Similarity=0.089 Sum_probs=52.5
Q ss_pred hhhHHHHhHHHHHHHHhhh-cccCCCCchHHHHHHHHHHhhccchhhhhhhHHHHHHHHHHHHHHHHHHhccCchhHHHH
Q 029873 63 GSGYLSGAVLGAIKGSVEG-LRQAEPSDSLKLRVNRVLNSGGQVGRRFGNSLGVLGLIFAGMESGLIYLRDSDDLLNTVA 141 (186)
Q Consensus 63 G~~yl~G~~~Gg~~G~~~G-~~~~~~g~~~k~r~~~~ln~~~k~g~~~g~~~g~~g~~ys~~e~~l~~~R~k~D~~Nsv~ 141 (186)
.++.++|.+.+.+.|+.+. ..+-..+ -++.+.....+-+-.++.--++..++.+.++..-.+-=-..-.+--.+
T Consensus 22 ~~G~~~G~~~g~~~G~rnsp~g~rl~g-----~l~av~~rap~~g~~Fav~g~lys~~ec~i~~~R~KeD~~NsiiAG~~ 96 (170)
T TIGR00980 22 AMGTIGGSIFQAFKGFRNSPKGEKLVG-----AMRAIKTRAPVLGGNFAVWGGLFSTIDCAVVAIRKKEDPWNSIISGFL 96 (170)
T ss_pred HHHHHHHHHHHHHHHhhcCCccchhhH-----HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHH
Confidence 3444556666666666655 2121111 112222223333444454555555566665554443222344555555
Q ss_pred HHHHHHHHHhhCCChHHHHHhHHHHHHHHHHHHHHHH
Q 029873 142 AGLGTGAIYRAAGGLRSAAVAGAIGGITAAAAVAGKQ 178 (186)
Q Consensus 142 AG~~TGal~~~~~G~raa~ig~~~G~~la~~~~~~~~ 178 (186)
.|++-++==..+.=.+.+++++++-+++-++-.++.+
T Consensus 97 TGa~l~~r~G~~a~~~~aa~gg~~la~ie~~g~~~~~ 133 (170)
T TIGR00980 97 TGAALAVRGGPRAMRGSAILGACILAVIEGVGLVLTR 133 (170)
T ss_pred HHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555554433444455555566666665555444443
No 26
>PF03875 Statherin: Statherin; InterPro: IPR005575 Statherin functions biologically to inhibit the nucleation and growth of calcium phosphate minerals. The N terminus of statherin is highly charged, the glutamic acids of which have been shown to be important in the recognition hydroxyapatite [].
Probab=54.18 E-value=12 Score=23.26 Aligned_cols=22 Identities=50% Similarity=0.936 Sum_probs=17.7
Q ss_pred CCCCCCCCCCCcccccCCCCCCcc
Q 029873 18 RYHPYQQFDVPIQNLYNLPTSPEF 41 (186)
Q Consensus 18 ~~~py~~~~~~~~~~~~~~~~pe~ 41 (186)
.|-||+.+- +++||-.|-+|.|
T Consensus 18 rygpyqp~p--eq~lypqpyqp~y 39 (42)
T PF03875_consen 18 RYGPYQPFP--EQPLYPQPYQPPY 39 (42)
T ss_pred ccCCcCCCC--CCcCCCCCCCCcc
Confidence 488999774 7899999888864
No 27
>PRK10510 putative outer membrane lipoprotein; Provisional
Probab=53.66 E-value=14 Score=30.87 Aligned_cols=35 Identities=20% Similarity=0.153 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHhhCCC-----hHHHHHhHHHHHHHHHHH
Q 029873 139 TVAAGLGTGAIYRAAGG-----LRSAAVAGAIGGITAAAA 173 (186)
Q Consensus 139 sv~AG~~TGal~~~~~G-----~raa~ig~~~G~~la~~~ 173 (186)
..+.|+++|++.....| -+.+++|+++|+++++++
T Consensus 38 ga~~Ga~~Ga~~G~~~g~~~~~~~~a~~ga~~G~~~G~~~ 77 (219)
T PRK10510 38 GAGIGSLVGAGIGALSSSKKDRGKGALIGAAAGAALGGGV 77 (219)
T ss_pred hhHHHHHHHHHHHhhhcCCCcccchhhhHhHHHhhhhhhh
Confidence 35556666666655333 256777777777666654
No 28
>TIGR02359 thiW thiW protein. Levels of thiamine pyrophosphate (TPP) or thiamine regulate transcription or translation of a number of thiamine biosynthesis, salvage, or transport genes in a wide range of prokaryotes. The mechanism involves direct binding, with no protein involved,to a structural element called THI found in the untranslated upstream region of thiamine metabolism gene operons. This element is called a riboswitch and is seen also for other metabolites such as FMN and glycine. This protein family consists of proteins identified in operons controlled by the THI riboswitch and designated ThiW. The hydrophobic nature of this protein and reconstructed metabolic background suggests that this protein acts in transport of a thiazole precursor of thiamine.
Probab=52.67 E-value=1.2e+02 Score=24.32 Aligned_cols=17 Identities=18% Similarity=0.343 Sum_probs=9.0
Q ss_pred HHHHhHHHHHHHHhhhc
Q 029873 66 YLSGAVLGAIKGSVEGL 82 (186)
Q Consensus 66 yl~G~~~Gg~~G~~~G~ 82 (186)
.+.|..+|=.+|...+.
T Consensus 39 vlaavllGP~~g~~~a~ 55 (160)
T TIGR02359 39 VIAGVLLGPWYALAVAF 55 (160)
T ss_pred HHHHHHHchHHHHHHHH
Confidence 34455555555555444
No 29
>COG4980 GvpP Gas vesicle protein [General function prediction only]
Probab=49.26 E-value=50 Score=25.27 Aligned_cols=24 Identities=29% Similarity=0.483 Sum_probs=20.6
Q ss_pred hhHHHHhHHHHHHHHhhhcccCCC
Q 029873 64 SGYLSGAVLGAIKGSVEGLRQAEP 87 (186)
Q Consensus 64 ~~yl~G~~~Gg~~G~~~G~~~~~~ 87 (186)
-.|+.|.++|++.|...++.-+|.
T Consensus 5 ~~~l~G~liGgiiGa~aaLL~AP~ 28 (115)
T COG4980 5 KDFLFGILIGGIIGAAAALLFAPK 28 (115)
T ss_pred chHHHHHHHHHHHHHHHHHHhCCc
Confidence 468899999999999999988774
No 30
>KOG3324 consensus Mitochondrial import inner membrane translocase, subunit TIM23 [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.58 E-value=27 Score=29.26 Aligned_cols=148 Identities=18% Similarity=0.094 Sum_probs=79.5
Q ss_pred cCCCCCCcccchhhhhhccCCcccchhhhh-h----hhHHHH--hHHHHHHHHhhhcccCCCCchHHHHHHHHHHhhccc
Q 029873 33 YNLPTSPEFLFHEESLNSRRSWGENLQYYT-G----SGYLSG--AVLGAIKGSVEGLRQAEPSDSLKLRVNRVLNSGGQV 105 (186)
Q Consensus 33 ~~~~~~pe~lf~ee~~~~~r~~~e~l~~~t-G----~~yl~G--~~~Gg~~G~~~G~~~~~~g~~~k~r~~~~ln~~~k~ 105 (186)
++.|-+.|||..++. ..+--++|+-.-.. | ..|-.| ...|.++|.+.|+..-......+.-.+--+|.+-..
T Consensus 42 ld~~~n~d~ly~~~~-~pefl~~~eg~~~~rgw~E~l~f~tG~~yl~G~~iGa~~G~~~Glk~~e~~~~~Klr~nrILN~ 120 (206)
T KOG3324|consen 42 LDKPLNVDYLYLLPD-QPEFLFPEEGAIKRRGWFENLTFGTGWAYLTGSAIGAFNGLILGLKNTENGASGKLRLNRILNS 120 (206)
T ss_pred cccccccchhhhccC-CccccCchhccccccchhhhhheeccchhccchhhhhHHHHHHhhhcCCCCCccchhHHHHhhh
Confidence 456666688887764 23444554443322 2 234444 355667777777764321111122223344555555
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHH-hccCchhHHHHHHHHHHHHHhhCCChHHHHHhHHHHHHHHHHHHHHHHHHhh
Q 029873 106 GRRFGNSLGVLGLIFAGMESGLIYL-RDSDDLLNTVAAGLGTGAIYRAAGGLRSAAVAGAIGGITAAAAVAGKQAVKR 182 (186)
Q Consensus 106 g~~~g~~~g~~g~~ys~~e~~l~~~-R~k~D~~Nsv~AG~~TGal~~~~~G~raa~ig~~~G~~la~~~~~~~~~~~r 182 (186)
.-+-|-.||=--..-..+=++++.. +.+.|--.. .-++++|++-.+---.-.-..+.++++++.+.+.++=.+-+|
T Consensus 121 ~t~~G~~~gN~lG~laL~YsaiesgI~~~R~~dd~-lnsv~AGalTGalyrs~~Glr~~av~ga~g~~aa~aw~l~k~ 197 (206)
T KOG3324|consen 121 VTRRGRFWGNTLGSLALMYSAIESGIEATRGKDDD-LNSVAAGALTGALYRSTRGLRAAAVAGAVGGTAAAAWTLGKR 197 (206)
T ss_pred ccccccccccchhHHHHHHHHHHHHHHHhhccccc-hhhhhhhhhhhhhhhcCCCchHHHHHHHHHHHHHHHHHHhhh
Confidence 5666666665555555555555443 334443333 556666666555444445566677777777777666555554
No 31
>PF11840 DUF3360: Protein of unknown function (DUF3360); InterPro: IPR021794 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 489 to 517 amino acids in length.
Probab=41.09 E-value=7.5 Score=35.86 Aligned_cols=40 Identities=28% Similarity=0.532 Sum_probs=29.7
Q ss_pred CCCCCCCCCCCcccccCCCCCCcccchhhhhhccCCcccchhh
Q 029873 18 RYHPYQQFDVPIQNLYNLPTSPEFLFHEESLNSRRSWGENLQY 60 (186)
Q Consensus 18 ~~~py~~~~~~~~~~~~~~~~pe~lf~ee~~~~~r~~~e~l~~ 60 (186)
.-+.|+++..|. .+-.+-.|||.+|=+.++.|+|+-|+.+
T Consensus 13 ~~~sY~~~hkpa---seF~~R~~yL~HeLqIm~pkRw~~nLP~ 52 (492)
T PF11840_consen 13 EEKSYRELHKPA---SEFETRSEYLEHELQIMSPKRWRLNLPF 52 (492)
T ss_pred cchhHHHhhCCh---hhcccHHHHHhhhhhhcCcccccCCCCC
Confidence 345677776443 4677888999999999999999866443
No 32
>KOG4505 consensus Na+/H+ antiporter [Inorganic ion transport and metabolism]
Probab=40.42 E-value=1.1e+02 Score=28.21 Aligned_cols=77 Identities=21% Similarity=0.221 Sum_probs=45.6
Q ss_pred cCCcccchhhhhhhhHHHHhHHHHHHHHhhhcccCCCCchHHHHHHHHHHhhccchhhhhhhHHHHHHHHHHHHHHHHHH
Q 029873 51 RRSWGENLQYYTGSGYLSGAVLGAIKGSVEGLRQAEPSDSLKLRVNRVLNSGGQVGRRFGNSLGVLGLIFAGMESGLIYL 130 (186)
Q Consensus 51 ~r~~~e~l~~~tG~~yl~G~~~Gg~~G~~~G~~~~~~g~~~k~r~~~~ln~~~k~g~~~g~~~g~~g~~ys~~e~~l~~~ 130 (186)
.|.| .|...---+..|..+|.+.|.+. +++++..-|+.-.=.-+|=++.++-..+..++..+
T Consensus 200 ~rdw---v~~~iLyec~fg~llG~vIG~l~---------------r~~lk~aekkrlid~eSfl~~~vvl~lfc~gigti 261 (467)
T KOG4505|consen 200 GRDW---VCDNILYECFFGCLLGCVIGYLS---------------RQGLKFAEKKRLIDRESFLIFYVVLALFCMGIGTI 261 (467)
T ss_pred CCce---ehhHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHhccccHHHHHHHHHHHHHHHhhhhhe
Confidence 4555 44444444455556666666541 12222222222222246777777778888889999
Q ss_pred hccCchhHHHHHHHH
Q 029873 131 RDSDDLLNTVAAGLG 145 (186)
Q Consensus 131 R~k~D~~Nsv~AG~~ 145 (186)
-|.||.+-+..||++
T Consensus 262 iGvddLl~sFfAGi~ 276 (467)
T KOG4505|consen 262 IGVDDLLVSFFAGIV 276 (467)
T ss_pred echhHHHHHHHhhhh
Confidence 999998877777654
No 33
>PF13436 Gly-zipper_OmpA: Glycine-zipper containing OmpA-like membrane domain
Probab=39.15 E-value=75 Score=23.99 Aligned_cols=15 Identities=40% Similarity=0.534 Sum_probs=6.4
Q ss_pred HHHHhHHHHHHHHHH
Q 029873 158 SAAVAGAIGGITAAA 172 (186)
Q Consensus 158 aa~ig~~~G~~la~~ 172 (186)
.+++|+++|++....
T Consensus 80 GAa~Ga~~G~~~g~~ 94 (118)
T PF13436_consen 80 GAAAGAAVGAAAGAA 94 (118)
T ss_pred HHHHHHHHHHHhhhh
Confidence 334444444444433
No 34
>KOG0754 consensus Mitochondrial oxodicarboxylate carrier protein [Energy production and conversion]
Probab=34.66 E-value=15 Score=31.99 Aligned_cols=39 Identities=13% Similarity=0.173 Sum_probs=24.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Q 029873 111 NSLGVLGLIFAGMESGLIYLRDSDDLLNTVAAGLGTGAI 149 (186)
Q Consensus 111 ~~~g~~g~~ys~~e~~l~~~R~k~D~~Nsv~AG~~TGal 149 (186)
++++-+|+.|+.-+..=+.--.....+|-+++|+++|.+
T Consensus 177 wn~gYFG~y~~vrn~vP~~k~~~~~~~~~~i~g~l~gtl 215 (294)
T KOG0754|consen 177 WNMGYFGFYYQVRNSVPSAKDKTLEIRRKLIIGALAGTL 215 (294)
T ss_pred eecchhhhHHHHHhhCCCccCcHHHHHHHHHHHHhhhhh
Confidence 466677777766555443222234578889999987765
No 35
>PF13548 DUF4126: Domain of unknown function (DUF4126)
Probab=34.62 E-value=2.5e+02 Score=22.83 Aligned_cols=66 Identities=23% Similarity=0.056 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHhccCchhHH------HHHHHHHHHHHhhCCChHH-HHHhHHHHHHHHHHHHHHHHHHh
Q 029873 116 LGLIFAGMESGLIYLRDSDDLLNT------VAAGLGTGAIYRAAGGLRS-AAVAGAIGGITAAAAVAGKQAVK 181 (186)
Q Consensus 116 ~g~~ys~~e~~l~~~R~k~D~~Ns------v~AG~~TGal~~~~~G~ra-a~ig~~~G~~la~~~~~~~~~~~ 181 (186)
+-.+....|-..+|+-.-|+.++. +++|++.++.......+.. ..++.+.|+..+++....|-.+.
T Consensus 49 i~~v~~v~E~~adkiP~vd~~~d~i~~~~r~~aGall~aa~~~~~~~~~~~~la~i~Gg~~A~~~~~~~a~~R 121 (177)
T PF13548_consen 49 ILGVLAVVEFIADKIPWVDSRLDAIQTPIRPIAGALLAAAVAGEMDPAVQWALAAIAGGGVAGAVHAAKAGTR 121 (177)
T ss_pred HHHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344667789999999987777764 4566666665544444443 34688888888888888775443
No 36
>PRK09824 PTS system beta-glucoside-specific transporter subunits IIABC; Provisional
Probab=33.92 E-value=4.1e+02 Score=25.96 Aligned_cols=15 Identities=33% Similarity=0.426 Sum_probs=9.3
Q ss_pred hHHHHhHHHHHHHHh
Q 029873 65 GYLSGAVLGAIKGSV 79 (186)
Q Consensus 65 ~yl~G~~~Gg~~G~~ 79 (186)
..+.|+++|++|-++
T Consensus 288 ~~i~g~i~g~~~~~l 302 (627)
T PRK09824 288 PAFAGAVMGAFWQVF 302 (627)
T ss_pred hHHHHHHHHHHHHHH
Confidence 355666777776554
No 37
>PRK10540 lipoprotein; Provisional
Probab=33.50 E-value=1.7e+02 Score=20.44 Aligned_cols=31 Identities=26% Similarity=0.390 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHhhCCChHHHHHhHHHHHHHH
Q 029873 139 TVAAGLGTGAIYRAAGGLRSAAVAGAIGGITA 170 (186)
Q Consensus 139 sv~AG~~TGal~~~~~G~raa~ig~~~G~~la 170 (186)
...+|++.|+++. ...+..+++|+++|+++.
T Consensus 37 Ga~~Ga~~Ga~~g-~g~~~g~~~Ga~~G~~~G 67 (72)
T PRK10540 37 GAGAGALGGAVLT-DGSTLGTLGGAAVGGVIG 67 (72)
T ss_pred HHHHHHHHHHHhc-CCcHHHHHHHHHHHHHHh
Confidence 3455666677663 223456666666666554
No 38
>PF12597 DUF3767: Protein of unknown function (DUF3767); InterPro: IPR022533 This group of proteins includes mitochodrial cytochrome c oxidase proteins [], and some transmembrane domain-containing proteins of unknown function known as FAM36A. Proteins in this family are typically between 112 and 199 amino acids in length.
Probab=27.54 E-value=1.1e+02 Score=23.25 Aligned_cols=22 Identities=23% Similarity=0.131 Sum_probs=15.6
Q ss_pred hhHHHHhHHHHHHHHhhhcccC
Q 029873 64 SGYLSGAVLGAIKGSVEGLRQA 85 (186)
Q Consensus 64 ~~yl~G~~~Gg~~G~~~G~~~~ 85 (186)
-+++.|...|.+.|++.-+...
T Consensus 42 ~slL~Gi~~G~~vG~~~fl~~~ 63 (118)
T PF12597_consen 42 DSLLYGIAGGFGVGGLRFLFTS 63 (118)
T ss_pred HHHHHHHHHHHHHHhhhhcccC
Confidence 3667788888888887776543
No 39
>PF03116 NQR2_RnfD_RnfE: NQR2, RnfD, RnfE family; InterPro: IPR004338 This family of proteins describes the Nqr2 (NqrB) subunit of the bacterial 6-subunit sodium-translocating NADH-ubiquinone oxidoreductase (i.e. a respiration linked sodium pump). In Vibrio cholerae, it negatively regulates the expression of virulence factors through inhibiting (by an unknown mechanism) the transcription of the transcriptional activator ToxT []. The family also includes RnfD, which is involved in nitrogen fixation. The similarity of RnfD to NADH-ubiquinone oxidoreductases was previously noted [].; GO: 0006810 transport, 0016020 membrane
Probab=24.75 E-value=2e+02 Score=25.43 Aligned_cols=48 Identities=19% Similarity=0.091 Sum_probs=35.6
Q ss_pred HHHHHHHHHHhccCc----hhHHHHHHHHHHHHHhhCCChHHHHHhHHHHHH
Q 029873 121 AGMESGLIYLRDSDD----LLNTVAAGLGTGAIYRAAGGLRSAAVAGAIGGI 168 (186)
Q Consensus 121 s~~e~~l~~~R~k~D----~~Nsv~AG~~TGal~~~~~G~raa~ig~~~G~~ 168 (186)
...|....++|+|+- +..+++-|.+-+.++-..--+-..++|++++-+
T Consensus 53 ~l~E~l~~~l~~~~~~~~~d~sa~vTglLlal~LP~~~P~w~v~ig~~~aI~ 104 (313)
T PF03116_consen 53 VLAEALFAKLRKRPIPTLKDLSAVVTGLLLALLLPPSVPLWVVAIGSFFAIV 104 (313)
T ss_pred HHHHHHHHHHhcCCCCCCCCccHHHHHHHHHHhCCCCCcHHHHHHHHHHHHH
Confidence 356999999998774 566777777777777777777777777765433
No 40
>KOG1398 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.52 E-value=3.1e+02 Score=25.56 Aligned_cols=94 Identities=15% Similarity=-0.060 Sum_probs=54.0
Q ss_pred cCCcccchhhhhhhhHHHHh----HHHHHHHHhhhcccCCCCchHHHHHHHHHHhhccchhhhhhhHHHHHHHHHHHHHH
Q 029873 51 RRSWGENLQYYTGSGYLSGA----VLGAIKGSVEGLRQAEPSDSLKLRVNRVLNSGGQVGRRFGNSLGVLGLIFAGMESG 126 (186)
Q Consensus 51 ~r~~~e~l~~~tG~~yl~G~----~~Gg~~G~~~G~~~~~~g~~~k~r~~~~ln~~~k~g~~~g~~~g~~g~~ys~~e~~ 126 (186)
.-+|.+++.-.+-.+++.+. ..+...-.++-.+. .+....+.-...+...+.+.+..++ .....|-...|.
T Consensus 24 ~h~w~~~c~ga~~~~ll~~~~~~l~~y~~~ya~~l~~~-~r~~s~~d~~~k~~~~~cqs~lflv----tn~~~f~al~C~ 98 (460)
T KOG1398|consen 24 DHSWVANCIGALCQSLLLSYGVRLGIYILLYAFKLARG-QRYSSLLDLDLKVREEACQSGLFLV----TNTGSFHALRCC 98 (460)
T ss_pred cCCcccchhHHHHHHHHhhcceehhhHHHHHHHHHHHh-ccCchhhHHHHHHHHHHHhhceeee----echHHHHHHHHH
Confidence 46788776665544444442 22333322222221 1111111112334444555555544 344567788999
Q ss_pred HHHHhccCchhHHHHHHHHHHHH
Q 029873 127 LIYLRDSDDLLNTVAAGLGTGAI 149 (186)
Q Consensus 127 l~~~R~k~D~~Nsv~AG~~TGal 149 (186)
+.+.++|.-.||+.++|++.+.-
T Consensus 99 lRkwlgkftp~t~glv~s~las~ 121 (460)
T KOG1398|consen 99 LRKWLGKFTPLTSGLVGSVLASS 121 (460)
T ss_pred HHHHhcccCcccHHHHHHHHhhh
Confidence 99999999999999999987754
No 41
>PF06897 DUF1269: Protein of unknown function (DUF1269); InterPro: IPR009200 There are currently no experimental data for members of this group or their homologues. However, these proteins are predicted to contain two or more transmembrane segments.
Probab=24.25 E-value=1.9e+02 Score=21.33 Aligned_cols=33 Identities=27% Similarity=0.216 Sum_probs=21.0
Q ss_pred HHHHHHHHHhhCCCh--HHHHHhHHHHHHHHHHHH
Q 029873 142 AGLGTGAIYRAAGGL--RSAAVAGAIGGITAAAAV 174 (186)
Q Consensus 142 AG~~TGal~~~~~G~--raa~ig~~~G~~la~~~~ 174 (186)
.|.+.|.++..-.++ -.+++|+++|++.+....
T Consensus 3 ~G~~~G~LiGll~~~pl~G~~~GA~~Gal~G~l~d 37 (102)
T PF06897_consen 3 SGALWGLLIGLLFGPPLLGAAVGAAAGALAGALSD 37 (102)
T ss_pred chhHHHHHHHHHhhhHHHHHHHHHHHHHHHhHHhh
Confidence 456666666665454 566777777777666553
No 42
>PF11990 DUF3487: Protein of unknown function (DUF3487); InterPro: IPR021877 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 121 to 136 amino acids in length. This protein has a conserved RLN sequence motif.
Probab=24.19 E-value=1.9e+02 Score=22.04 Aligned_cols=38 Identities=29% Similarity=0.290 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHhhCCChHHHHHhHHHHHHHHHHHHHHH
Q 029873 140 VAAGLGTGAIYRAAGGLRSAAVAGAIGGITAAAAVAGK 177 (186)
Q Consensus 140 v~AG~~TGal~~~~~G~raa~ig~~~G~~la~~~~~~~ 177 (186)
.++|+..|..+..-.|.-+++..+++-+.+.+++..++
T Consensus 34 ~~~g~~~gl~la~~~g~~a~~pt~~ll~~~~~v~~gg~ 71 (121)
T PF11990_consen 34 FVAGLVVGLPLALLTGWWAMIPTGALLGPILGVFVGGK 71 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 34445555555555677767777777666766666655
No 43
>COG2979 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.15 E-value=1.4e+02 Score=25.39 Aligned_cols=38 Identities=21% Similarity=0.326 Sum_probs=26.0
Q ss_pred cCchhHHHHHHHHHHHHHhhCCChHHHHHhHHHHHHHH
Q 029873 133 SDDLLNTVAAGLGTGAIYRAAGGLRSAAVAGAIGGITA 170 (186)
Q Consensus 133 k~D~~Nsv~AG~~TGal~~~~~G~raa~ig~~~G~~la 170 (186)
..+..|++.+|++++.++...++-+-..-..-+|++.+
T Consensus 31 ~~~~l~p~~~GALaa~Llg~K~~rk~~~k~~k~GglAA 68 (225)
T COG2979 31 LGSLLNPLGGGALAAMLLGNKSARKLGGKATKLGGLAA 68 (225)
T ss_pred cccccCcchhHHHHHHHHcCcchHHHHhhHhhhhhHHH
Confidence 56789999999999999988775544433333343333
No 44
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=23.82 E-value=6.7e+02 Score=24.26 Aligned_cols=93 Identities=17% Similarity=0.136 Sum_probs=59.4
Q ss_pred hhhhhhhhHHHHhHHHHHHH-----HhhhcccCCCCchHHHHHHHHHHhhccchhhhhhhHHHHHHHHHHHHHHHHHHhc
Q 029873 58 LQYYTGSGYLSGAVLGAIKG-----SVEGLRQAEPSDSLKLRVNRVLNSGGQVGRRFGNSLGVLGLIFAGMESGLIYLRD 132 (186)
Q Consensus 58 l~~~tG~~yl~G~~~Gg~~G-----~~~G~~~~~~g~~~k~r~~~~ln~~~k~g~~~g~~~g~~g~~ys~~e~~l~~~R~ 132 (186)
+.+.++.++++|..+=-..- -...+.+...+++ -.+-..+.++|++...=+.+-++...+.++-+.+..-|.
T Consensus 289 Ii~s~~i~~i~gw~~~I~i~~~i~~D~~~v~ns~~g~p---~~~i~~~~lg~k~~v~~~~l~ii~~f~~gi~s~~a~SR~ 365 (550)
T KOG1289|consen 289 IISSIAIGFILGWIIIIGIAYTIPDDLDAVLNSSLGQP---IVQIYYQALGKKGAVFLLSLIIIALFFMGISSLTASSRL 365 (550)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchHHHHhcCCCCCh---HHHHHHHhcCCCceEehhHHHHHHHHHhhHHHHHHHHHH
Confidence 55556666666643222111 3334444433443 344556777888886668899999999999998876664
Q ss_pred ----------------------cCchhHHHHHHHHHHHHHhhC
Q 029873 133 ----------------------SDDLLNTVAAGLGTGAIYRAA 153 (186)
Q Consensus 133 ----------------------k~D~~Nsv~AG~~TGal~~~~ 153 (186)
..-..|++.--++-..+...-
T Consensus 366 v~afaRDg~LP~S~~~~~v~~~t~~P~nAv~l~~i~s~llgll 408 (550)
T KOG1289|consen 366 VYAFARDGGLPFSKYLAKVNPQTKVPLNAVLLSCIISILLGLL 408 (550)
T ss_pred HhhhhccCCCCCcceeeecCCCCCCcHHHHHHHHHHHHHHHHH
Confidence 134678888888777776553
No 45
>COG2261 Predicted membrane protein [Function unknown]
Probab=23.30 E-value=2e+02 Score=20.75 Aligned_cols=11 Identities=36% Similarity=0.389 Sum_probs=4.7
Q ss_pred HHHHHHHHHHh
Q 029873 141 AAGLGTGAIYR 151 (186)
Q Consensus 141 ~AG~~TGal~~ 151 (186)
+||.+++.+++
T Consensus 12 iaG~lA~~i~~ 22 (82)
T COG2261 12 IAGWLAGKIMP 22 (82)
T ss_pred HHHHHHHHhcC
Confidence 34444444444
No 46
>PHA01399 membrane protein P6
Probab=22.70 E-value=2.1e+02 Score=24.05 Aligned_cols=37 Identities=32% Similarity=0.383 Sum_probs=23.5
Q ss_pred HHHHHHHHHhhCCChHHHH------HhHHHHHHHHHHHHHHHHH
Q 029873 142 AGLGTGAIYRAAGGLRSAA------VAGAIGGITAAAAVAGKQA 179 (186)
Q Consensus 142 AG~~TGal~~~~~G~raa~------ig~~~G~~la~~~~~~~~~ 179 (186)
||+. +++.+-..+...++ .|.+.|+++.+.|.++|..
T Consensus 130 agav-~~~wkg~~~~a~a~weaakelgsaaggv~~g~wdfik~n 172 (242)
T PHA01399 130 AGAV-AAIWKGAGAAADAAWEAAKELGSAAGGVIGGIWDFIKDN 172 (242)
T ss_pred HHHH-HHHHcccchhhhHHHHHHHHhhhhccchhhhHHHHhccC
Confidence 4443 56666554443332 5777888888888888753
No 47
>PF09955 DUF2189: Predicted integral membrane protein (DUF2189); InterPro: IPR018692 This family includes several hypothetical prokaryotic proteins. Some are described as putative cytochrome c oxidases.
Probab=21.81 E-value=3.6e+02 Score=20.45 Aligned_cols=98 Identities=17% Similarity=0.134 Sum_probs=49.6
Q ss_pred HHHHHhhhcccCCCCchHHHHHHHHHHh-hccchhhhh---hhHHHHHHHHHHHHHHH-HHHhccCchhHHHHHHHHHHH
Q 029873 74 AIKGSVEGLRQAEPSDSLKLRVNRVLNS-GGQVGRRFG---NSLGVLGLIFAGMESGL-IYLRDSDDLLNTVAAGLGTGA 148 (186)
Q Consensus 74 g~~G~~~G~~~~~~g~~~k~r~~~~ln~-~~k~g~~~g---~~~g~~g~~ys~~e~~l-~~~R~k~D~~Nsv~AG~~TGa 148 (186)
.+.|+++-.|+-++|++. ...+.+.. ..++..... --+.++-.+....-..+ ..+-+..|.-| ...+..+
T Consensus 16 ~A~GlYeiSrr~e~G~~~--~~~~~l~~~~~~~~~~l~~~~~vl~l~~~~W~~~a~~i~a~~~G~~~~~~--~~~~~~~- 90 (128)
T PF09955_consen 16 LAVGLYEISRRRERGEPP--SWGDSLSALWRRNLRQLAGFGLVLILIFLIWLRVAALIFALFFGPLPIPD--LSEFLAG- 90 (128)
T ss_pred HHHHHHHHHHHHhCCCCC--CHHHHHhhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCC--HHHHHHH-
Confidence 456788888876665543 34555555 222222222 22222222222222222 12223233222 2223322
Q ss_pred HHhhCCChHHHHHhHHHHHHHHHHHHHH
Q 029873 149 IYRAAGGLRSAAVAGAIGGITAAAAVAG 176 (186)
Q Consensus 149 l~~~~~G~raa~ig~~~G~~la~~~~~~ 176 (186)
++-.++|+.-.+++.++|++++...-+.
T Consensus 91 ~~~t~~g~~~li~~~~vG~v~A~i~f~i 118 (128)
T PF09955_consen 91 VFFTPRGWGFLIVGTLVGGVFAAIVFAI 118 (128)
T ss_pred HhcCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 3446779999999999999998876554
No 48
>PF09769 ApoO: Apolipoprotein O; InterPro: IPR019166 Apolipoproteins are proteins that binds to lipids. Members of this family promote cholesterol efflux from macrophage cells. They are present in various lipoprotein complexes, including HDL, LDL and VLDL. Apolipoprotein O is a 198 amino acids protein that contains a 23 amino acids long signal peptide. The apoprotein is secreted by a microsomal triglyceride transfer protein (MTTP)-dependent mechanism, probably as a VLDL-associated protein that is subsequently transferred to HDL. Apolipoprotein O is the first chondroitine sulphate chain containing apolipoprotein [].
Probab=20.60 E-value=50 Score=25.89 Aligned_cols=36 Identities=17% Similarity=0.036 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHhhCCChHHHHHhHHHHHHHHHHHH
Q 029873 139 TVAAGLGTGAIYRAAGGLRSAAVAGAIGGITAAAAV 174 (186)
Q Consensus 139 sv~AG~~TGal~~~~~G~raa~ig~~~G~~la~~~~ 174 (186)
.|+-|++||.++..++|+-.-++--++++++++.++
T Consensus 99 ~I~vaglaGsIlar~r~~~~R~~~P~~~g~~~~~~~ 134 (158)
T PF09769_consen 99 YIGVAGLAGSILARRRGIFKRFLYPLAFGGAAASYC 134 (158)
T ss_pred eeehhhhheeeeeccCcchhhhHHHHHHHHHHhHhc
Confidence 456677799999998887666666666666665554
No 49
>PRK09796 PTS system cellobiose/arbutin/salicin-specific transporter subunits IIBC; Provisional
Probab=20.42 E-value=7.2e+02 Score=23.35 Aligned_cols=14 Identities=36% Similarity=0.518 Sum_probs=8.7
Q ss_pred HHHHhHHHHHHHHh
Q 029873 66 YLSGAVLGAIKGSV 79 (186)
Q Consensus 66 yl~G~~~Gg~~G~~ 79 (186)
.+.|+++|++|-++
T Consensus 291 ~i~g~i~g~~~~~l 304 (472)
T PRK09796 291 WLSVAIMGALWPLL 304 (472)
T ss_pred HHHHHHHHHHHHHH
Confidence 45666666666554
No 50
>KOG3244 consensus Protein involved in ubiquinone biosynthesis [Coenzyme transport and metabolism]
Probab=20.22 E-value=96 Score=26.83 Aligned_cols=60 Identities=23% Similarity=0.281 Sum_probs=32.4
Q ss_pred HHHHHHhccCchhHHHHH------HHHH-HHHHhhCCChHHHHHhHHHHHHHHHHHHHHHHHHhhhcC
Q 029873 125 SGLIYLRDSDDLLNTVAA------GLGT-GAIYRAAGGLRSAAVAGAIGGITAAAAVAGKQAVKRYVP 185 (186)
Q Consensus 125 ~~l~~~R~k~D~~Nsv~A------G~~T-Gal~~~~~G~raa~ig~~~G~~la~~~~~~~~~~~r~~~ 185 (186)
..+..||+.||+|-++.. |=+| =.+=...-|+ +|++.++++|.+=---.--+.++++|.|
T Consensus 156 YvmqRYRE~HDf~Hti~~mPTNilGEv~vK~~E~~q~GL-PMc~lg~ifG~~RL~~kqr~~l~~~ylP 222 (267)
T KOG3244|consen 156 YVMQRYRECHDFYHTILNMPTNILGEVTVKWLEGVQMGL-PMCILGAIFGPVRLNEKQRSRLLKHYLP 222 (267)
T ss_pred HHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHhcCC-chHHhhhccchhhcCHHHHHHHHHhhcc
Confidence 467899999999976532 2222 1111223344 3444444444433334445567788877
Done!