Query 029873
Match_columns 186
No_of_seqs 166 out of 663
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 07:35:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029873.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029873hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mhp_C TIC62_peptide, ferredox 25.3 54 0.0019 17.7 2.2 10 16-25 3-12 (26)
2 2lbg_A Major prion protein; co 15.3 1.2E+02 0.004 16.6 2.2 17 65-81 6-22 (27)
3 3p5n_A RIBU, riboflavin uptake 14.0 3.4E+02 0.012 20.5 5.7 22 147-168 100-121 (189)
4 1jl0_A Adometdc, S-adenosylmet 11.8 20 0.00069 31.0 -2.4 41 40-80 116-161 (334)
5 2b2h_A AMT-1, ammonium transpo 11.3 6.6E+02 0.022 21.8 7.2 46 127-172 237-285 (399)
6 2lck_A Mitochondrial uncouplin 11.3 3.6E+02 0.012 21.4 5.3 34 116-149 178-215 (303)
7 1bts_A BAND 3 anion transport 11.1 2.2E+02 0.0075 15.1 2.9 17 139-155 6-22 (26)
8 2imj_A Hypothetical protein DU 10.7 57 0.0019 25.3 0.0 17 123-139 16-32 (166)
9 1mhm_A Adometdc, samdc, S-aden 10.7 19 0.00066 30.4 -2.8 42 40-81 47-98 (288)
10 2keg_A PLNK; protein, peptide, 10.5 1.3E+02 0.0044 16.6 1.5 18 62-79 6-23 (32)
No 1
>3mhp_C TIC62_peptide, ferredoxin--NADP reductase, LEAF isozyme, chlorop; FNR, oxidoreductase, thylakoid membrane, proton-FLUX, poly P helix; HET: FAD; 1.70A {Pisum sativum}
Probab=25.26 E-value=54 Score=17.74 Aligned_cols=10 Identities=20% Similarity=0.600 Sum_probs=7.6
Q ss_pred CCCCCCCCCC
Q 029873 16 YRRYHPYQQF 25 (186)
Q Consensus 16 ~~~~~py~~~ 25 (186)
.|.++||...
T Consensus 3 ~rPlSpy~~Y 12 (26)
T 3mhp_C 3 EQPLSPYTAY 12 (26)
T ss_dssp CCCSSTTTTB
T ss_pred ccccCccccc
Confidence 4778999865
No 2
>2lbg_A Major prion protein; conserved hydrophobic region, membrane protei; NMR {Homo sapiens}
Probab=15.30 E-value=1.2e+02 Score=16.56 Aligned_cols=17 Identities=35% Similarity=0.614 Sum_probs=10.8
Q ss_pred hHHHHhHHHHHHHHhhh
Q 029873 65 GYLSGAVLGAIKGSVEG 81 (186)
Q Consensus 65 ~yl~G~~~Gg~~G~~~G 81 (186)
++..|+++|++-|.+-|
T Consensus 6 a~AAGaVvGglGgy~lg 22 (27)
T 2lbg_A 6 AAAAGAVVGGLGGYMLG 22 (27)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhHHHHHH
Confidence 45567777777666654
No 3
>3p5n_A RIBU, riboflavin uptake protein; transporter, alpha-helical bundle, transport protein; HET: RBF; 3.60A {Staphylococcus aureus}
Probab=14.04 E-value=3.4e+02 Score=20.53 Aligned_cols=22 Identities=27% Similarity=0.243 Sum_probs=9.9
Q ss_pred HHHHhhCCChHHHHHhHHHHHH
Q 029873 147 GAIYRAAGGLRSAAVAGAIGGI 168 (186)
Q Consensus 147 Gal~~~~~G~raa~ig~~~G~~ 168 (186)
|-+|+-....+..++|.++|.+
T Consensus 100 ~~~y~k~~~~~~~~~~~i~G~~ 121 (189)
T 3p5n_A 100 YAIYKNKRSTKSLITGLIIATI 121 (189)
T ss_dssp HHHHSSSCSHHHHHHHHHHHHH
T ss_pred HHHHHhcccHHHHHHHHHHHHH
Confidence 3444444444444444444443
No 4
>1jl0_A Adometdc, S-adenosylmethionine decarboxylase proenzyme; spermidine biosynthesis, lyase, pyruvate, sandwich, allosteric enzyme, pyruvoyl; 1.50A {Homo sapiens} SCOP: d.156.1.1 PDB: 1msv_A 1i7b_A* 1i79_A* 1i72_A* 1i7c_A* 1i7m_A* 3dz6_A* 3dz2_A* 3dz5_A* 3dz4_A* 3dz7_A* 3h0w_A* 3h0v_A* 1jen_A 3dz3_A* 3ep9_A 3ep6_A* 3ep3_A* 3ep8_A* 3ep5_A* ...
Probab=11.80 E-value=20 Score=30.96 Aligned_cols=41 Identities=17% Similarity=0.303 Sum_probs=30.3
Q ss_pred cccchhhhhhccCCcccchhhh-----hhhhHHHHhHHHHHHHHhh
Q 029873 40 EFLFHEESLNSRRSWGENLQYY-----TGSGYLSGAVLGAIKGSVE 80 (186)
Q Consensus 40 e~lf~ee~~~~~r~~~e~l~~~-----tG~~yl~G~~~Gg~~G~~~ 80 (186)
.|+||+.+..+-|+|.|++.+- .|.+|++|-.=+-=|.++.
T Consensus 116 nf~fP~~Q~~pH~sf~eEv~~L~~~F~~G~aY~~G~~~~~hw~ly~ 161 (334)
T 1jl0_A 116 NFMKPSHQGYPHRNFQEEIEFLNAIFPNGAGYCMGRMNSDCWYLYT 161 (334)
T ss_dssp CCSSGGGCCTTCSSHHHHHHHHHTTCSSEEEEEESCTTSSCEEEEE
T ss_pred CCCCcccCCCccCCHHHHHHHHHHhcCCCcEEEeCCCCCCeeEEEe
Confidence 5888998888888999997762 4889988866554455543
No 5
>2b2h_A AMT-1, ammonium transporter; membrane protein, transport protein; 1.54A {Archaeoglobus fulgidus} PDB: 2b2f_A 2b2i_A 2b2j_A
Probab=11.32 E-value=6.6e+02 Score=21.77 Aligned_cols=46 Identities=17% Similarity=0.233 Sum_probs=20.9
Q ss_pred HHHHhccCch---hHHHHHHHHHHHHHhhCCChHHHHHhHHHHHHHHHH
Q 029873 127 LIYLRDSDDL---LNTVAAGLGTGAIYRAAGGLRSAAVAGAIGGITAAA 172 (186)
Q Consensus 127 l~~~R~k~D~---~Nsv~AG~~TGal~~~~~G~raa~ig~~~G~~la~~ 172 (186)
++++|+|-|. .|.++||.++=.-=..--.|-.+++=+++++++.-.
T Consensus 237 ~~~~~gk~~~~~~~nG~lAGLVaITa~~~~v~p~~A~iiG~iag~i~~~ 285 (399)
T 2b2h_A 237 IGWIKGKPGSLGIVSGAIAGLAAITPAAGFVDVKGAIVIGLVAGIVCYL 285 (399)
T ss_dssp HHHHHSCCCHHHHHHHHHHHHHHHTTTTTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHhhhhhccccccCCHHHHHHHHHHHHHHHHH
Confidence 3555577775 455555554311100112455554444444444433
No 6
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=11.30 E-value=3.6e+02 Score=21.40 Aligned_cols=34 Identities=18% Similarity=0.078 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHhc----cCchhHHHHHHHHHHHH
Q 029873 116 LGLIFAGMESGLIYLRD----SDDLLNTVAAGLGTGAI 149 (186)
Q Consensus 116 ~g~~ys~~e~~l~~~R~----k~D~~Nsv~AG~~TGal 149 (186)
.+..|...|..-+.+.. +++.+..+++|+++|++
T Consensus 178 ~~i~f~~ye~~k~~l~~~~~~~~~~~~~~~~g~~ag~~ 215 (303)
T 2lck_A 178 NCAELVTYDLIKDTLLKANLMTDDLPCHFTSAFGAGFC 215 (303)
T ss_dssp HHHHHHHHHHHHHTTTTTTSCCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHH
Confidence 34455566665555443 23456778888887764
No 7
>1bts_A BAND 3 anion transport protein; transmembrane protein; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 1btt_A
Probab=11.06 E-value=2.2e+02 Score=15.15 Aligned_cols=17 Identities=12% Similarity=0.257 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHhhCCC
Q 029873 139 TVAAGLGTGAIYRAAGG 155 (186)
Q Consensus 139 sv~AG~~TGal~~~~~G 155 (186)
.+++.+++|.+|..-+|
T Consensus 6 ~i~s~ai~Gi~f~lf~g 22 (26)
T 1bts_A 6 LLISTAVQGILFALLGA 22 (26)
T ss_dssp HHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 45666666666665443
No 8
>2imj_A Hypothetical protein DUF1348; alpha beta protein, structural genomics, PSI-2, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5} SCOP: d.17.4.23
Probab=10.67 E-value=57 Score=25.26 Aligned_cols=17 Identities=29% Similarity=0.292 Sum_probs=14.9
Q ss_pred HHHHHHHHhccCchhHH
Q 029873 123 MESGLIYLRDSDDLLNT 139 (186)
Q Consensus 123 ~e~~l~~~R~k~D~~Ns 139 (186)
.|+++.++|-.+|-||+
T Consensus 16 ~EtA~~KVr~AEDaWNs 32 (166)
T 2imj_A 16 RESAIEKIRLAEDGWNS 32 (166)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhhcc
Confidence 48899999999999996
No 9
>1mhm_A Adometdc, samdc, S-adenosylmethionine decarboxylase; covalent pyruvoyl group, lyase; 2.30A {Solanum tuberosum} SCOP: d.156.1.1
Probab=10.66 E-value=19 Score=30.44 Aligned_cols=42 Identities=12% Similarity=0.177 Sum_probs=18.6
Q ss_pred cccchhhhhhccCCcccchhh----h-----hhhhHHHHhHHH-HHHHHhhh
Q 029873 40 EFLFHEESLNSRRSWGENLQY----Y-----TGSGYLSGAVLG-AIKGSVEG 81 (186)
Q Consensus 40 e~lf~ee~~~~~r~~~e~l~~----~-----tG~~yl~G~~~G-g~~G~~~G 81 (186)
.|+||+.+..+-++|.|++.+ . .|.+|++|-.-. -=|.++.+
T Consensus 47 nf~fP~~Q~~pH~sf~eEV~~L~~~F~~~~~~G~aY~~G~~~~~~~W~lY~~ 98 (288)
T 1mhm_A 47 SFIFPGAQSFPHRHFSEEVAVLDGYFGKLAAGSKAVIMGSPDKTQKWHVYSA 98 (288)
T ss_dssp C-----------CCHHHHHHHHHHHHTTSTTCEEEEEESSSCSSCCEEEEEE
T ss_pred cCCCcccCCCCcCCHHHHHHHHHHHhcccCCCceeEEeCCCCCCCceEEEeC
Confidence 578888877777999988766 1 367787774432 23445443
No 10
>2keg_A PLNK; protein, peptide, antimicrobial protein; NMR {Lactobacillus plantarum} PDB: 2keh_A
Probab=10.49 E-value=1.3e+02 Score=16.60 Aligned_cols=18 Identities=39% Similarity=0.741 Sum_probs=12.0
Q ss_pred hhhhHHHHhHHHHHHHHh
Q 029873 62 TGSGYLSGAVLGAIKGSV 79 (186)
Q Consensus 62 tG~~yl~G~~~Gg~~G~~ 79 (186)
-|.+|..|..+|++--.+
T Consensus 6 ngigyaigyafgaverav 23 (32)
T 2keg_A 6 NGIGYAIGYAFGAVERAV 23 (32)
T ss_dssp SSSHHHHHHHHHHHHHHH
T ss_pred cCcceeehhhhhHHHHHH
Confidence 467787777777765433
Done!