Query 029873
Match_columns 186
No_of_seqs 166 out of 663
Neff 6.2
Searched_HMMs 13730
Date Mon Mar 25 07:35:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029873.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/029873hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1okca_ f.42.1.1 (A:) ADP,ATP 9.7 2.9E+02 0.021 19.4 8.1 15 66-80 6-20 (292)
2 d2imja1 d.17.4.23 (A:5-159) Hy 8.7 35 0.0026 24.3 0.0 17 123-139 12-28 (155)
3 d1kq8a_ a.4.5.14 (A:) HFH-1 (H 8.6 69 0.005 19.8 1.5 23 118-140 21-44 (75)
4 d3bpya1 a.4.5.14 (A:93-177) Af 7.5 94 0.0068 19.6 1.8 25 116-140 28-58 (85)
5 d1g5ma_ f.1.4.1 (A:) Bcl-2 {Hu 6.6 3.8E+02 0.028 18.2 5.5 48 91-141 83-131 (164)
6 d2e74d2 f.23.12.1 (D:12-45) IS 6.3 2E+02 0.015 14.8 2.9 16 162-177 14-29 (34)
7 d1jl0a_ d.156.1.1 (A:) S-adeno 6.0 23 0.0017 28.4 -2.4 40 40-79 112-156 (325)
8 d2hdca_ a.4.5.14 (A:) Genesis 5.2 1.7E+02 0.012 18.7 2.1 23 118-140 27-50 (97)
9 d2bfdb1 c.36.1.7 (B:2-204) Bra 5.0 80 0.0058 23.0 0.4 56 55-110 64-121 (203)
10 d1tr9a_ c.1.8.7 (A:) Beta-hexo 4.9 2.1E+02 0.016 21.8 3.0 46 24-76 110-157 (330)
No 1
>d1okca_ f.42.1.1 (A:) ADP,ATP carrier protein {Cow (Bos taurus), heart isoform t1 [TaxId: 9913]}
Probab=9.69 E-value=2.9e+02 Score=19.41 Aligned_cols=15 Identities=13% Similarity=0.496 Sum_probs=6.3
Q ss_pred HHHHhHHHHHHHHhh
Q 029873 66 YLSGAVLGAIKGSVE 80 (186)
Q Consensus 66 yl~G~~~Gg~~G~~~ 80 (186)
|+-.++.|++-|++.
T Consensus 6 ~~~~~laG~~a~~i~ 20 (292)
T d1okca_ 6 FLKDFLAGGVAAAIS 20 (292)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444444443
No 2
>d2imja1 d.17.4.23 (A:5-159) Hypothetical protein PFL3262 {Pseudomonas fluorescens [TaxId: 294]}
Probab=8.70 E-value=35 Score=24.35 Aligned_cols=17 Identities=29% Similarity=0.292 Sum_probs=15.1
Q ss_pred HHHHHHHHhccCchhHH
Q 029873 123 MESGLIYLRDSDDLLNT 139 (186)
Q Consensus 123 ~e~~l~~~R~k~D~~Ns 139 (186)
.|+++.++|-.+|.||+
T Consensus 12 ~etA~~KVr~AEdaWNs 28 (155)
T d2imja1 12 RESAIEKIRLAEDGWNS 28 (155)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhhcc
Confidence 47899999999999997
No 3
>d1kq8a_ a.4.5.14 (A:) HFH-1 (HNF-3 forkhead homolog-1) {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=8.57 E-value=69 Score=19.76 Aligned_cols=23 Identities=17% Similarity=0.140 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHhc-cCchhHHH
Q 029873 118 LIFAGMESGLIYLRD-SDDLLNTV 140 (186)
Q Consensus 118 ~~ys~~e~~l~~~R~-k~D~~Nsv 140 (186)
-+|..++.-...+|. .++|-|+|
T Consensus 21 eIy~~i~~~fpy~r~~~~gWkNSI 44 (75)
T d1kq8a_ 21 EINEYLMGKFPFFRGSYTGWRNSV 44 (75)
T ss_dssp HHHHHHHHHCTTGGGTCSCCHHHH
T ss_pred HHHHHHHHhCcccccCCccchhHh
Confidence 466677777777775 56688887
No 4
>d3bpya1 a.4.5.14 (A:93-177) Afx (Foxo4) {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.46 E-value=94 Score=19.58 Aligned_cols=25 Identities=24% Similarity=0.420 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHhccC------chhHHH
Q 029873 116 LGLIFAGMESGLIYLRDSD------DLLNTV 140 (186)
Q Consensus 116 ~g~~ys~~e~~l~~~R~k~------D~~Nsv 140 (186)
+.=+|..++.-..++|... +|-|+|
T Consensus 28 L~eIY~~i~~~fPyyr~~~~~~~~~gWkNSI 58 (85)
T d3bpya1 28 LAQIYEWMVRTVPYFKDKGDSNSSAGWKNSI 58 (85)
T ss_dssp HHHHHHHHHHHCGGGTTCTTCCTTSHHHHHH
T ss_pred HHHHHHHHHHhChhhhccCcccccccchhhH
Confidence 3457888888888888654 478876
No 5
>d1g5ma_ f.1.4.1 (A:) Bcl-2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.56 E-value=3.8e+02 Score=18.22 Aligned_cols=48 Identities=13% Similarity=0.069 Sum_probs=27.0
Q ss_pred HHHHHHHHHHhhccchhhhhhhHHHHHHHHHHHHHHHHHHhc-cCchhHHHH
Q 029873 91 LKLRVNRVLNSGGQVGRRFGNSLGVLGLIFAGMESGLIYLRD-SDDLLNTVA 141 (186)
Q Consensus 91 ~k~r~~~~ln~~~k~g~~~g~~~g~~g~~ys~~e~~l~~~R~-k~D~~Nsv~ 141 (186)
.....+.+.+.+-+.|..||.-.+.+++.+.... ...+. .++..+.|+
T Consensus 83 ~~~~f~~Va~elF~dginWGRIVal~~F~~~la~---~~~~~~~~~~v~~i~ 131 (164)
T d1g5ma_ 83 ARGRFATVVEELFRDGVNWGRIVAFFEFGGVMCV---ESVNREMSPLVDNIA 131 (164)
T ss_dssp HHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHH---HHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH---HHHHcCCchHHHHHH
Confidence 3455677888887888766655555544444433 33332 345556554
No 6
>d2e74d2 f.23.12.1 (D:12-45) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Mastigocladus laminosus [TaxId: 83541]}
Probab=6.29 E-value=2e+02 Score=14.81 Aligned_cols=16 Identities=19% Similarity=-0.070 Sum_probs=6.8
Q ss_pred hHHHHHHHHHHHHHHH
Q 029873 162 AGAIGGITAAAAVAGK 177 (186)
Q Consensus 162 g~~~G~~la~~~~~~~ 177 (186)
|.+.|.++++++-++|
T Consensus 14 gt~tg~alg~lypvvk 29 (34)
T d2e74d2 14 GTVTGVALGALYPLVK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHhhhhhHHh
Confidence 3334444444444433
No 7
>d1jl0a_ d.156.1.1 (A:) S-adenosylmethionine decarboxylase {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.02 E-value=23 Score=28.38 Aligned_cols=40 Identities=18% Similarity=0.286 Sum_probs=28.4
Q ss_pred cccchhhhhhccCCcccchhh-----hhhhhHHHHhHHHHHHHHh
Q 029873 40 EFLFHEESLNSRRSWGENLQY-----YTGSGYLSGAVLGAIKGSV 79 (186)
Q Consensus 40 e~lf~ee~~~~~r~~~e~l~~-----~tG~~yl~G~~~Gg~~G~~ 79 (186)
.|+||+.+.-+-++|.|++.+ ..|.+|++|-.=+-=|.++
T Consensus 112 nf~fP~~Q~~pH~sf~~Ev~~L~~~f~~G~aY~~G~~~~~hw~ly 156 (325)
T d1jl0a_ 112 NFMKPSHQGYPHRNFQEEIEFLNAIFPNGAGYCMGRMNSDCWYLY 156 (325)
T ss_dssp CCSSGGGCCTTCSSHHHHHHHHHTTCSSEEEEEESCTTSSCEEEE
T ss_pred cCcCcccCCcccCCHHHHHHHHHHhCCCCceEEecCCCCCeEEEE
Confidence 467788765566889988766 2588998887665555554
No 8
>d2hdca_ a.4.5.14 (A:) Genesis {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=5.18 E-value=1.7e+02 Score=18.69 Aligned_cols=23 Identities=17% Similarity=0.192 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHhc-cCchhHHH
Q 029873 118 LIFAGMESGLIYLRD-SDDLLNTV 140 (186)
Q Consensus 118 ~~ys~~e~~l~~~R~-k~D~~Nsv 140 (186)
=+|..++.-..++|. .++|-|||
T Consensus 27 eIY~~i~~~fpyfr~~~~gWkNSI 50 (97)
T d2hdca_ 27 GICEFISNRFPYYREKFPAWQNSI 50 (97)
T ss_dssp HHHHHHHHHCHHHHHHCSSHHHHH
T ss_pred HHHHHHHHhCccccCCCCCchhhh
Confidence 367777777777776 45677876
No 9
>d2bfdb1 c.36.1.7 (B:2-204) Branched-chain alpha-keto acid dehydrogenase, Pyr module {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.04 E-value=80 Score=23.03 Aligned_cols=56 Identities=14% Similarity=0.197 Sum_probs=27.1
Q ss_pred ccchhhhhhhh--HHHHhHHHHHHHHhhhcccCCCCchHHHHHHHHHHhhccchhhhh
Q 029873 55 GENLQYYTGSG--YLSGAVLGAIKGSVEGLRQAEPSDSLKLRVNRVLNSGGQVGRRFG 110 (186)
Q Consensus 55 ~e~l~~~tG~~--yl~G~~~Gg~~G~~~G~~~~~~g~~~k~r~~~~ln~~~k~g~~~g 110 (186)
|++-++.|..+ .++|.++|.+..-++-+.+.+..+-.-.-..++.|.+.|--..++
T Consensus 64 G~~Rv~dtPIsE~~~~G~a~G~A~~G~rPive~~f~dF~~~a~dqi~n~~ak~~~~~~ 121 (203)
T d2bfdb1 64 GKDRVFNTPLCEQGIVGFGIGIAVTGATAIAEIQFADYIFPAFDQIVNEAAKYRYRSG 121 (203)
T ss_dssp CTTTEEECCSCHHHHHHHHHHHHHTTCCEEEECSSGGGCGGGHHHHHTTGGGHHHHTT
T ss_pred hhhheeccccccceecchhhhhhhcccceEEEEEehhhhhhhHHHHHHHHhhhhcccC
Confidence 44445555543 667777776653333333322221111234566677666444444
No 10
>d1tr9a_ c.1.8.7 (A:) Beta-hexosaminidase NagZ {Vibrio cholerae [TaxId: 666]}
Probab=4.87 E-value=2.1e+02 Score=21.76 Aligned_cols=46 Identities=17% Similarity=0.313 Sum_probs=29.0
Q ss_pred CCCCCcccccCCCCCCcccchhhhhhccCCcccchhh--hhhhhHHHHhHHHHHH
Q 029873 24 QFDVPIQNLYNLPTSPEFLFHEESLNSRRSWGENLQY--YTGSGYLSGAVLGAIK 76 (186)
Q Consensus 24 ~~~~~~~~~~~~~~~pe~lf~ee~~~~~r~~~e~l~~--~tG~~yl~G~~~Gg~~ 76 (186)
+.|+.+.|..++...|. .+..|+|||+-.. .-+.+|+-|.--.++.
T Consensus 110 Gin~~~aPv~Dv~~~~~-------~i~~rsfg~Dp~~v~~~a~a~i~G~q~~gv~ 157 (330)
T d1tr9a_ 110 DVDLSFAPVLDMGFACK-------AIGNRAFGEDVQTVLKHSSAFLRGMKAVGMA 157 (330)
T ss_dssp TCCEECCCBCCCCSCST-------TTGGGSSCSSHHHHHHHHHHHHHHHHHTTCC
T ss_pred CCCcccchhcccccccc-------hhhhcccccchhHHHHhhhheeecccccccc
Confidence 44444566666655554 2456889988555 4578888887655444
Done!