Query 029874
Match_columns 186
No_of_seqs 114 out of 1096
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 05:01:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029874.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029874hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1577 Aldo/keto reductase fa 100.0 1E-41 2.2E-46 275.3 16.4 169 2-178 6-176 (300)
2 COG0656 ARA1 Aldo/keto reducta 100.0 1.7E-41 3.7E-46 273.4 15.6 154 2-181 5-161 (280)
3 PRK11565 dkgA 2,5-diketo-D-glu 100.0 1.6E-35 3.5E-40 241.2 16.2 145 2-172 6-150 (275)
4 COG0667 Tas Predicted oxidored 100.0 1.3E-35 2.8E-40 245.8 15.7 157 2-186 4-182 (316)
5 TIGR01293 Kv_beta voltage-depe 100.0 3.8E-35 8.2E-40 243.4 16.3 149 3-178 3-168 (317)
6 PRK11172 dkgB 2,5-diketo-D-glu 100.0 7.4E-35 1.6E-39 236.4 16.6 137 10-171 2-140 (267)
7 cd06660 Aldo_ket_red Aldo-keto 100.0 5.8E-34 1.3E-38 232.2 15.7 155 3-185 3-174 (285)
8 PLN02587 L-galactose dehydroge 100.0 7.9E-34 1.7E-38 235.1 16.3 141 3-167 3-159 (314)
9 PRK10625 tas putative aldo-ket 100.0 7.6E-34 1.7E-38 238.1 16.1 159 2-171 4-190 (346)
10 PRK09912 L-glyceraldehyde 3-ph 100.0 1.1E-33 2.3E-38 237.3 16.7 141 3-169 17-177 (346)
11 PRK10376 putative oxidoreducta 100.0 2.8E-33 6.1E-38 229.6 15.2 153 2-181 9-185 (290)
12 KOG1575 Voltage-gated shaker-l 100.0 4.2E-32 9.1E-37 223.0 15.1 152 4-185 17-187 (336)
13 PRK14863 bifunctional regulato 100.0 3.2E-32 6.9E-37 223.6 12.1 150 8-185 2-166 (292)
14 PF00248 Aldo_ket_red: Aldo/ke 100.0 2.5E-31 5.4E-36 216.5 13.2 145 13-184 1-162 (283)
15 COG1453 Predicted oxidoreducta 100.0 1.8E-30 3.9E-35 213.0 11.3 157 4-185 6-176 (391)
16 KOG1576 Predicted oxidoreducta 100.0 1.3E-29 2.8E-34 200.3 12.8 148 2-175 25-192 (342)
17 COG4989 Predicted oxidoreducta 100.0 3.1E-28 6.8E-33 190.9 9.6 135 5-166 7-163 (298)
18 KOG3023 Glutamate-cysteine lig 96.9 0.0012 2.6E-08 52.5 4.0 53 133-186 150-202 (285)
19 PRK05283 deoxyribose-phosphate 78.4 22 0.00047 28.9 8.7 87 12-102 134-227 (257)
20 COG3623 SgaU Putative L-xylulo 77.2 37 0.0008 27.4 10.1 40 6-45 65-117 (287)
21 TIGR00126 deoC deoxyribose-pho 76.7 27 0.00058 27.5 8.6 78 15-100 123-205 (211)
22 PF03102 NeuB: NeuB family; I 74.3 27 0.00059 28.0 8.2 117 19-166 51-184 (241)
23 COG0635 HemN Coproporphyrinoge 71.8 37 0.00081 29.5 9.1 126 27-164 137-276 (416)
24 PRK00208 thiG thiazole synthas 68.5 51 0.0011 26.7 8.5 133 11-176 10-145 (250)
25 cd02930 DCR_FMN 2,4-dienoyl-Co 68.2 73 0.0016 26.9 12.0 39 143-181 266-304 (353)
26 PF00072 Response_reg: Respons 66.7 19 0.00041 23.9 5.1 65 91-181 34-99 (112)
27 PF00724 Oxidored_FMN: NADH:fl 66.2 73 0.0016 26.7 9.5 35 146-180 284-318 (341)
28 COG1748 LYS9 Saccharopine dehy 65.8 43 0.00093 29.0 8.0 79 23-112 78-159 (389)
29 cd07948 DRE_TIM_HCS Saccharomy 64.3 62 0.0014 26.2 8.5 126 4-159 7-132 (262)
30 PF05690 ThiG: Thiazole biosyn 62.8 61 0.0013 26.1 7.8 133 11-175 8-144 (247)
31 cd07945 DRE_TIM_CMS Leptospira 62.3 59 0.0013 26.6 8.0 50 4-60 4-55 (280)
32 PRK13796 GTPase YqeH; Provisio 60.1 1.1E+02 0.0023 26.0 11.7 121 22-174 55-183 (365)
33 COG1801 Uncharacterized conser 59.9 94 0.002 25.3 10.8 93 12-112 3-115 (263)
34 COG0274 DeoC Deoxyribose-phosp 57.8 96 0.0021 24.8 8.5 81 11-99 127-212 (228)
35 PF02679 ComA: (2R)-phospho-3- 57.6 62 0.0013 26.1 7.2 77 23-109 83-169 (244)
36 PRK00507 deoxyribose-phosphate 56.9 62 0.0013 25.6 7.1 80 13-99 125-208 (221)
37 cd00959 DeoC 2-deoxyribose-5-p 56.2 91 0.002 24.0 8.0 76 15-98 122-202 (203)
38 cd00405 PRAI Phosphoribosylant 56.1 89 0.0019 23.9 9.6 25 142-166 88-112 (203)
39 PRK05414 urocanate hydratase; 54.4 46 0.00099 29.9 6.3 115 28-175 116-255 (556)
40 TIGR01228 hutU urocanate hydra 54.4 44 0.00095 29.8 6.2 115 28-175 107-246 (545)
41 PF01118 Semialdhyde_dh: Semia 50.6 25 0.00055 24.5 3.6 27 22-48 75-101 (121)
42 COG4669 EscJ Type III secretor 48.4 1.4E+02 0.0031 24.0 11.2 127 20-151 27-173 (246)
43 cd04734 OYE_like_3_FMN Old yel 48.3 1.7E+02 0.0036 24.7 11.9 40 142-181 274-313 (343)
44 PRK10550 tRNA-dihydrouridine s 46.7 1.7E+02 0.0037 24.3 11.5 133 22-181 73-222 (312)
45 PF05990 DUF900: Alpha/beta hy 46.5 1.4E+02 0.0031 23.5 9.0 99 51-166 6-104 (233)
46 PRK15108 biotin synthase; Prov 46.5 1.8E+02 0.0039 24.5 12.7 128 21-177 76-212 (345)
47 PRK13347 coproporphyrinogen II 46.1 2E+02 0.0044 25.1 11.2 128 27-166 152-293 (453)
48 PF01175 Urocanase: Urocanase; 44.1 76 0.0017 28.5 6.1 116 27-175 105-245 (546)
49 TIGR03597 GTPase_YqeH ribosome 42.9 2.1E+02 0.0045 24.2 8.8 83 68-174 91-177 (360)
50 PRK05628 coproporphyrinogen II 42.6 2.1E+02 0.0045 24.2 11.7 76 81-165 173-249 (375)
51 PLN02746 hydroxymethylglutaryl 41.3 2.2E+02 0.0048 24.2 10.1 137 5-175 54-210 (347)
52 PRK02399 hypothetical protein; 41.0 1E+02 0.0022 26.8 6.3 60 87-176 199-272 (406)
53 TIGR02090 LEU1_arch isopropylm 40.9 2.3E+02 0.0049 24.1 10.0 51 4-60 7-57 (363)
54 PRK08255 salicylyl-CoA 5-hydro 39.6 3.3E+02 0.0072 25.6 13.3 36 146-181 680-715 (765)
55 COG1902 NemA NADH:flavin oxido 38.8 2.5E+02 0.0054 24.0 12.4 75 86-179 239-314 (363)
56 KOG0059 Lipid exporter ABCA1 a 38.6 95 0.0021 29.8 6.4 49 100-171 716-764 (885)
57 PF14606 Lipase_GDSL_3: GDSL-l 37.2 1.9E+02 0.0041 22.1 7.0 100 8-110 33-146 (178)
58 PF07021 MetW: Methionine bios 36.5 79 0.0017 24.6 4.6 40 138-177 88-127 (193)
59 PRK09413 IS2 repressor TnpA; R 36.0 55 0.0012 23.0 3.5 42 21-62 13-55 (121)
60 PF05049 IIGP: Interferon-indu 35.5 1.1E+02 0.0024 26.3 5.8 71 35-111 109-201 (376)
61 cd04728 ThiG Thiazole synthase 34.4 2.5E+02 0.0054 22.7 8.7 130 11-176 9-145 (248)
62 TIGR00238 KamA family protein. 34.2 2.8E+02 0.0061 23.2 9.2 103 24-153 145-251 (331)
63 COG2022 ThiG Uncharacterized e 33.5 2.6E+02 0.0056 22.6 9.9 129 11-175 16-151 (262)
64 PRK13523 NADPH dehydrogenase N 32.0 1.5E+02 0.0032 24.9 6.0 40 142-181 264-303 (337)
65 cd05006 SIS_GmhA Phosphoheptos 31.7 1E+02 0.0022 22.9 4.6 31 139-170 115-145 (177)
66 PF00388 PI-PLC-X: Phosphatidy 31.6 40 0.00086 24.4 2.2 70 25-96 27-115 (146)
67 COG0796 MurI Glutamate racemas 31.3 3E+02 0.0064 22.6 9.3 66 39-112 9-79 (269)
68 COG3215 PilZ Tfp pilus assembl 31.1 66 0.0014 22.4 3.0 60 29-95 25-106 (117)
69 PF01527 HTH_Tnp_1: Transposas 30.9 15 0.00031 23.2 -0.3 40 22-61 8-48 (76)
70 COG0541 Ffh Signal recognition 30.8 2.8E+02 0.0062 24.5 7.4 82 9-93 154-239 (451)
71 PRK07379 coproporphyrinogen II 30.8 3.5E+02 0.0075 23.2 10.9 129 26-165 114-256 (400)
72 smart00148 PLCXc Phospholipase 30.6 2E+02 0.0044 20.6 7.2 68 25-94 29-115 (135)
73 TIGR00538 hemN oxygen-independ 29.7 3.8E+02 0.0082 23.4 11.4 128 27-166 151-292 (455)
74 COG0135 TrpF Phosphoribosylant 29.6 99 0.0021 24.3 4.2 87 30-161 15-109 (208)
75 PLN02389 biotin synthase 29.4 3.7E+02 0.0079 23.1 11.0 105 21-153 116-227 (379)
76 COG1880 CdhB CO dehydrogenase/ 29.2 2.5E+02 0.0055 21.2 7.5 37 12-48 38-74 (170)
77 cd07938 DRE_TIM_HMGL 3-hydroxy 29.0 3.2E+02 0.0068 22.2 8.5 36 4-44 5-40 (274)
78 cd04740 DHOD_1B_like Dihydroor 28.9 3.1E+02 0.0068 22.2 12.5 143 22-179 100-256 (296)
79 PF01904 DUF72: Protein of unk 28.6 1.9E+02 0.004 22.8 5.7 66 38-111 19-96 (230)
80 KOG3206 Alpha-tubulin folding 28.6 29 0.00063 27.3 1.0 16 34-49 197-212 (234)
81 KOG1205 Predicted dehydrogenas 28.4 3.4E+02 0.0074 22.4 10.1 122 27-158 26-149 (282)
82 PF11181 YflT: Heat induced st 28.3 1E+02 0.0022 21.0 3.6 29 47-76 6-34 (103)
83 KOG1579 Homocysteine S-methylt 27.3 3.8E+02 0.0082 22.6 9.4 86 23-108 52-169 (317)
84 PRK11840 bifunctional sulfur c 26.5 4E+02 0.0086 22.6 11.0 75 78-176 145-219 (326)
85 TIGR03822 AblA_like_2 lysine-2 26.1 3.8E+02 0.0083 22.2 10.8 103 24-153 122-228 (321)
86 PLN02881 tetrahydrofolylpolygl 25.9 3.8E+02 0.0083 24.2 7.7 102 40-146 332-456 (530)
87 TIGR01278 DPOR_BchB light-inde 25.6 4.8E+02 0.011 23.2 8.6 61 47-112 67-127 (511)
88 COG5016 Pyruvate/oxaloacetate 25.5 4.4E+02 0.0095 23.3 7.5 39 22-60 96-137 (472)
89 PRK09058 coproporphyrinogen II 25.5 4.6E+02 0.0099 22.9 10.8 124 27-165 163-305 (449)
90 PF00148 Oxidored_nitro: Nitro 25.4 3.1E+02 0.0067 23.2 6.9 93 47-163 56-156 (398)
91 KOG2733 Uncharacterized membra 24.4 1.3E+02 0.0028 26.1 4.1 45 27-77 99-144 (423)
92 PF01487 DHquinase_I: Type I 3 24.1 3.4E+02 0.0074 21.0 10.0 80 19-105 70-151 (224)
93 PRK10302 hypothetical protein; 24.1 4E+02 0.0087 21.8 8.1 91 13-112 3-106 (272)
94 TIGR03586 PseI pseudaminic aci 23.6 4.5E+02 0.0097 22.1 10.5 123 21-174 74-214 (327)
95 cd00668 Ile_Leu_Val_MetRS_core 23.4 1.3E+02 0.0027 24.8 4.0 49 82-156 81-131 (312)
96 PF01207 Dus: Dihydrouridine s 23.3 4.3E+02 0.0093 21.8 8.8 127 22-178 64-208 (309)
97 COG0420 SbcD DNA repair exonuc 23.3 2.5E+02 0.0054 23.8 5.9 68 82-166 22-89 (390)
98 PRK06740 histidinol-phosphatas 23.1 4.5E+02 0.0098 22.0 9.9 24 23-46 60-83 (331)
99 COG1795 Formaldehyde-activatin 23.1 1.9E+02 0.0041 21.7 4.3 32 49-80 83-117 (170)
100 cd00814 MetRS_core catalytic c 23.0 1.3E+02 0.0029 24.8 4.1 47 82-154 68-114 (319)
101 TIGR03569 NeuB_NnaB N-acetylne 22.9 4.6E+02 0.01 22.1 11.5 118 20-166 72-206 (329)
102 cd08555 PI-PLCc_GDPD_SF Cataly 22.9 95 0.0021 23.2 2.9 21 22-42 11-31 (179)
103 TIGR00221 nagA N-acetylglucosa 22.8 4.9E+02 0.011 22.3 9.6 36 140-176 178-213 (380)
104 COG0429 Predicted hydrolase of 22.5 4.9E+02 0.011 22.2 9.6 91 71-176 77-171 (345)
105 PRK09856 fructoselysine 3-epim 22.1 4E+02 0.0086 21.0 10.4 33 13-45 2-34 (275)
106 PRK08392 hypothetical protein; 21.9 3.8E+02 0.0081 20.6 10.3 24 24-47 14-37 (215)
107 COG1751 Uncharacterized conser 21.9 2.3E+02 0.0049 21.4 4.6 68 24-99 14-85 (186)
108 TIGR03126 one_C_fae formaldehy 21.8 2E+02 0.0043 21.6 4.3 32 49-80 81-115 (160)
109 KOG0734 AAA+-type ATPase conta 21.8 2.8E+02 0.006 25.6 5.9 27 153-180 439-465 (752)
110 PF02829 3H: 3H domain; Inter 21.7 2.8E+02 0.006 19.0 5.5 73 22-97 6-95 (98)
111 PRK08195 4-hyroxy-2-oxovalerat 21.6 4.9E+02 0.011 21.9 12.1 35 5-44 11-45 (337)
112 PRK10415 tRNA-dihydrouridine s 21.6 4.7E+02 0.01 21.7 11.4 127 22-178 75-219 (321)
113 PF13602 ADH_zinc_N_2: Zinc-bi 21.2 1.3E+02 0.0028 20.5 3.2 34 138-171 80-113 (127)
114 PRK03995 hypothetical protein; 21.0 4.6E+02 0.01 21.4 6.7 79 10-100 181-264 (267)
115 PF06819 Arc_PepC: Archaeal Pe 21.0 3.1E+02 0.0067 19.3 5.4 69 64-155 37-105 (110)
116 PF02571 CbiJ: Precorrin-6x re 21.0 4.4E+02 0.0096 21.1 6.8 75 23-102 9-98 (249)
117 KOG2400 Nuclear protein ZAP [D 20.9 49 0.0011 20.8 0.8 20 141-160 32-51 (82)
118 PRK09061 D-glutamate deacylase 20.5 6.1E+02 0.013 22.6 11.2 110 26-163 171-286 (509)
119 PRK07094 biotin synthase; Prov 20.4 4.8E+02 0.01 21.3 10.9 122 22-171 71-201 (323)
120 PF14177 YkyB: YkyB-like prote 20.4 95 0.0021 22.7 2.3 19 142-160 30-48 (140)
121 cd03174 DRE_TIM_metallolyase D 20.3 4.3E+02 0.0092 20.7 11.5 38 4-46 4-41 (265)
122 PHA03398 viral phosphatase sup 20.2 2.6E+02 0.0057 23.4 5.1 41 139-181 151-191 (303)
123 TIGR01921 DAP-DH diaminopimela 20.0 5.4E+02 0.012 21.7 7.3 70 27-100 74-143 (324)
124 CHL00162 thiG thiamin biosynth 20.0 5E+02 0.011 21.3 11.8 129 11-175 16-158 (267)
No 1
>KOG1577 consensus Aldo/keto reductase family proteins [General function prediction only]
Probab=100.00 E-value=1e-41 Score=275.35 Aligned_cols=169 Identities=50% Similarity=0.804 Sum_probs=146.9
Q ss_pred eeecCCCCcCCccccccccCCchhHHHHHHHHHHhCCceEeCCCCCCCHHHHHHHHHHHhhcCCccccceEEEeccCCC-
Q 029874 2 AITLNNGFKMPIIGLGVWRMDESNIRDLIINAIKIGYRHIDCAADYRNEAEVGEALAEAFSTGLVKREDLFITTKLWNS- 80 (186)
Q Consensus 2 ~~~~~tg~~v~~lglG~~~~~~~~~~~~l~~a~~~Gi~~~Dta~~Yg~e~~vG~~l~~~~~~~~~~R~~~~i~tK~~~~- 80 (186)
++++++|.+||.||||||+.++.++.++++.|+++|+||||||..|+||..+|++|+.++..+.++|+++||+||+|+.
T Consensus 6 ~~~Ln~G~~mP~iGlGTw~~~~~~~~~aV~~Al~~GYRHIDtA~~Y~NE~evG~aik~~i~~~~v~RediFiTSKlw~~~ 85 (300)
T KOG1577|consen 6 TVKLNNGFKMPIIGLGTWQSPPGQVAEAVKAAIKAGYRHIDTAHVYGNEKEVGEAIKELLAEGGVKREDIFITSKLWPTD 85 (300)
T ss_pred eEeccCCCccceeeeEecccChhhHHHHHHHHHHhCcceeechhhhCChHHHHHHHHHHhhhCCcchhhheeeeccCccc
Confidence 5789999999999999999999999999999999999999999999999999999999998888999999999999985
Q ss_pred -ChhHHHHHHHHHHHHhCCCcccEEEEecCCCCCCCCCCCCCCCCCCCCcccccccccHHHHHHHHHHHHHcCCccEEEe
Q 029874 81 -DHGHVLEACKDSLKKLQLDYLDLYLVHFPVATKHTGVGTTDSALDADGVLEIDTTISLETTWHAMEDLVSMGLVRSIGI 159 (186)
Q Consensus 81 -~~~~i~~~~~~sl~~Lg~~~lDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGv 159 (186)
.++.++.++++||++||+||+|+|++|||...++ ..|.+..+....+ ..+..++|++||++++.|++|+|||
T Consensus 86 ~~~~~v~~al~~sLk~L~ldYvDLyLiH~P~~~k~------~~~~~~~~~~~~~-~~~~~~tW~amE~~~~~Gl~rsIGV 158 (300)
T KOG1577|consen 86 HAPELVEKALEKSLKKLQLDYVDLYLIHWPVAFKD------SFPKDENGKVNYD-DVDRIETWKAMEKLVDEGLVRSIGV 158 (300)
T ss_pred cChhhHHHHHHHHHHHhChhhhheeeEecccccCC------CCCcccccccccc-cchHHHHHHHHHHHHHcCCceEeee
Confidence 7899999999999999999999999999977632 2333332332222 2368899999999999999999999
Q ss_pred cCCCchhHhhHHhhccCCC
Q 029874 160 RYVGILNPCEHSIRSSKFS 178 (186)
Q Consensus 160 sn~~~~~l~~~~~~~~~~~ 178 (186)
|||+..+ ++.++...++-
T Consensus 159 SNF~~~~-le~ll~~~ki~ 176 (300)
T KOG1577|consen 159 SNFNIKQ-LEELLNLAKIK 176 (300)
T ss_pred ecCCHHH-HHHHHhcCCCC
Confidence 9999999 55555555443
No 2
>COG0656 ARA1 Aldo/keto reductases, related to diketogulonate reductase [General function prediction only]
Probab=100.00 E-value=1.7e-41 Score=273.44 Aligned_cols=154 Identities=45% Similarity=0.821 Sum_probs=135.6
Q ss_pred eeecCCCCcCCccccccccCCchh-HHHHHHHHHHhCCceEeCCCCCCCHHHHHHHHHHHhhcCCccccceEEEeccCCC
Q 029874 2 AITLNNGFKMPIIGLGVWRMDESN-IRDLIINAIKIGYRHIDCAADYRNEAEVGEALAEAFSTGLVKREDLFITTKLWNS 80 (186)
Q Consensus 2 ~~~~~tg~~v~~lglG~~~~~~~~-~~~~l~~a~~~Gi~~~Dta~~Yg~e~~vG~~l~~~~~~~~~~R~~~~i~tK~~~~ 80 (186)
++.+++|.+||.||||||+++..+ +.++++.|++.|+|+||||..||||..+|+++++. | ++|+++||+||+|+.
T Consensus 5 ~~~l~~g~~iP~iGlGt~~~~~~~~~~~av~~Al~~Gyr~IDTA~~YgnE~~VG~aI~~s---~-v~ReelFittKvw~~ 80 (280)
T COG0656 5 KVTLNNGVEIPAIGLGTWQIGDDEWAVRAVRAALELGYRLIDTAEIYGNEEEVGEAIKES---G-VPREELFITTKVWPS 80 (280)
T ss_pred eeecCCCCcccCcceEeeecCCchhHHHHHHHHHHhCcceEecHhHhcCHHHHHHHHHhc---C-CCHHHeEEEeecCCc
Confidence 467899999999999999998877 99999999999999999999999999999999993 4 899999999999988
Q ss_pred --ChhHHHHHHHHHHHHhCCCcccEEEEecCCCCCCCCCCCCCCCCCCCCcccccccccHHHHHHHHHHHHHcCCccEEE
Q 029874 81 --DHGHVLEACKDSLKKLQLDYLDLYLVHFPVATKHTGVGTTDSALDADGVLEIDTTISLETTWHAMEDLVSMGLVRSIG 158 (186)
Q Consensus 81 --~~~~i~~~~~~sl~~Lg~~~lDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iG 158 (186)
+++.+.+++++||++||+||+|+|++|||... . ...+.++|++||+++++|+||+||
T Consensus 81 ~~~~~~~~~a~e~Sl~rLg~dyvDLyLiHwP~~~-~--------------------~~~~~etw~alE~l~~~G~ir~IG 139 (280)
T COG0656 81 DLGYDETLKALEASLKRLGLDYVDLYLIHWPVPN-K--------------------YVVIEETWKALEELVDEGLIRAIG 139 (280)
T ss_pred cCCcchHHHHHHHHHHHhCCCceeEEEECCCCCc-c--------------------CccHHHHHHHHHHHHhcCCccEEE
Confidence 47999999999999999999999999999542 0 111679999999999999999999
Q ss_pred ecCCCchhHhhHHhhccCCCCCc
Q 029874 159 IRYVGILNPCEHSIRSSKFSTKF 181 (186)
Q Consensus 159 vsn~~~~~l~~~~~~~~~~~~~~ 181 (186)
||||+..+ ++.++.........
T Consensus 140 VSNF~~~~-L~~l~~~~~~~p~~ 161 (280)
T COG0656 140 VSNFGVEH-LEELLSLAKVKPAV 161 (280)
T ss_pred eeCCCHHH-HHHHHHhcCCCCce
Confidence 99999999 55555555544333
No 3
>PRK11565 dkgA 2,5-diketo-D-gluconate reductase A; Provisional
Probab=100.00 E-value=1.6e-35 Score=241.20 Aligned_cols=145 Identities=48% Similarity=0.763 Sum_probs=130.5
Q ss_pred eeecCCCCcCCccccccccCCchhHHHHHHHHHHhCCceEeCCCCCCCHHHHHHHHHHHhhcCCccccceEEEeccCCCC
Q 029874 2 AITLNNGFKMPIIGLGVWRMDESNIRDLIINAIKIGYRHIDCAADYRNEAEVGEALAEAFSTGLVKREDLFITTKLWNSD 81 (186)
Q Consensus 2 ~~~~~tg~~v~~lglG~~~~~~~~~~~~l~~a~~~Gi~~~Dta~~Yg~e~~vG~~l~~~~~~~~~~R~~~~i~tK~~~~~ 81 (186)
++.+++|+.||+||||||+++.+++.++++.|+++|+|+||||+.||+|..+|++|+.. + ++|++++|+||+|..+
T Consensus 6 ~~~l~~g~~v~~lglG~~~~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~E~~lG~al~~~---~-~~R~~~~i~tK~~~~~ 81 (275)
T PRK11565 6 VIKLQDGNVMPQLGLGVWQASNEEVITAIHKALEVGYRSIDTAAIYKNEEGVGKALKEA---S-VAREELFITTKLWNDD 81 (275)
T ss_pred eEEcCCCCccCCcceECccCCHHHHHHHHHHHHHhCCCEEEchhhhCCHHHHHHHHHHc---C-CCHHHEEEEEEecCcc
Confidence 56688999999999999999889999999999999999999999999999999999973 3 5699999999999878
Q ss_pred hhHHHHHHHHHHHHhCCCcccEEEEecCCCCCCCCCCCCCCCCCCCCcccccccccHHHHHHHHHHHHHcCCccEEEecC
Q 029874 82 HGHVLEACKDSLKKLQLDYLDLYLVHFPVATKHTGVGTTDSALDADGVLEIDTTISLETTWHAMEDLVSMGLVRSIGIRY 161 (186)
Q Consensus 82 ~~~i~~~~~~sl~~Lg~~~lDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvsn 161 (186)
++.+++++++||++||++|+|+|++|||+... ....++|++|++|+++|+||+||+||
T Consensus 82 ~~~~~~~~~~sL~rL~~d~iDl~~lH~p~~~~----------------------~~~~~~~~~l~~l~~~G~ir~iGvSn 139 (275)
T PRK11565 82 HKRPREALEESLKKLQLDYVDLYLMHWPVPAI----------------------DHYVEAWKGMIELQKEGLIKSIGVCN 139 (275)
T ss_pred hHHHHHHHHHHHHHhCCCceEEEEecCCCCCc----------------------CcHHHHHHHHHHHHHcCCeeEEeecc
Confidence 89999999999999999999999999985421 12568999999999999999999999
Q ss_pred CCchhHhhHHh
Q 029874 162 VGILNPCEHSI 172 (186)
Q Consensus 162 ~~~~~l~~~~~ 172 (186)
|+.+++.+.+.
T Consensus 140 ~~~~~l~~~~~ 150 (275)
T PRK11565 140 FQIHHLQRLID 150 (275)
T ss_pred CCHHHHHHHHH
Confidence 99998665543
No 4
>COG0667 Tas Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) [Energy production and conversion]
Probab=100.00 E-value=1.3e-35 Score=245.85 Aligned_cols=157 Identities=29% Similarity=0.426 Sum_probs=133.8
Q ss_pred eeecCCCCcCCccccccccCCc-------hhHHHHHHHHHHhCCceEeCCCCCC---CHHHHHHHHHHHhhcCCccccce
Q 029874 2 AITLNNGFKMPIIGLGVWRMDE-------SNIRDLIINAIKIGYRHIDCAADYR---NEAEVGEALAEAFSTGLVKREDL 71 (186)
Q Consensus 2 ~~~~~tg~~v~~lglG~~~~~~-------~~~~~~l~~a~~~Gi~~~Dta~~Yg---~e~~vG~~l~~~~~~~~~~R~~~ 71 (186)
+..|++|++||+||||||.+.. ..+.+++++|+++|||+||||+.|| ||..+|++|+.. + .|+++
T Consensus 4 r~lG~~gl~vs~lglG~~~~g~~~~~~~~~~a~~il~~A~d~Gin~~DTA~~Yg~g~sE~ilG~~l~~~---~--~Rd~v 78 (316)
T COG0667 4 RRLGRSGLKVSPLGLGTMTLGGDTDDEEEAEAIEILDAALDAGINFFDTADVYGDGRSEEILGEALKER---G--RRDKV 78 (316)
T ss_pred eecCCCCceecceeeeccccCCCCCchhhhHHHHHHHHHHHcCCCEEECccccCCCchHHHHHHHHhcc---C--CCCeE
Confidence 3578899999999999998743 2456699999999999999999998 799999999985 3 28999
Q ss_pred EEEeccCCC------------ChhHHHHHHHHHHHHhCCCcccEEEEecCCCCCCCCCCCCCCCCCCCCcccccccccHH
Q 029874 72 FITTKLWNS------------DHGHVLEACKDSLKKLQLDYLDLYLVHFPVATKHTGVGTTDSALDADGVLEIDTTISLE 139 (186)
Q Consensus 72 ~i~tK~~~~------------~~~~i~~~~~~sl~~Lg~~~lDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (186)
+|+||+... ++++|+++++.||+|||+||||+|++|||+.. .+..
T Consensus 79 vIaTK~g~~~~~~~~~~~~~~s~~~i~~~v~~SL~RLgtd~IDl~~iH~~d~~-----------------------~p~~ 135 (316)
T COG0667 79 VIATKVGYRPGDPGPNGVFGLSRDHIRRAVEASLKRLGTDYIDLYQLHRPDPE-----------------------TPIE 135 (316)
T ss_pred EEEEeeccCCCCCCCCccCCCCHHHHHHHHHHHHHHhCCCceeEEEeCCCCCC-----------------------CCHH
Confidence 999999321 68899999999999999999999999998753 3367
Q ss_pred HHHHHHHHHHHcCCccEEEecCCCchhHhhHHhhccCCCCCcceeeC
Q 029874 140 TTWHAMEDLVSMGLVRSIGIRYVGILNPCEHSIRSSKFSTKFIIVTL 186 (186)
Q Consensus 140 ~~~~~l~~l~~~G~ir~iGvsn~~~~~l~~~~~~~~~~~~~~~~~~~ 186 (186)
+++++|.+|+++|+||+||+||++.+++.+++....+|++....+||
T Consensus 136 e~~~aL~~l~~~G~ir~iG~S~~~~~~i~~a~~~~~~~~~~Q~~ynl 182 (316)
T COG0667 136 ETLEALDELVREGKIRYIGVSNYSAEQIAEALAVAAPIDSLQPEYNL 182 (316)
T ss_pred HHHHHHHHHHHcCCeeEEEecCCCHHHHHHHHHhcCCceeecccCcc
Confidence 89999999999999999999999999966666555567766666654
No 5
>TIGR01293 Kv_beta voltage-dependent potassium channel beta subunit, animal. Plant beta subunits and their closely related bacterial homologs (in Deinococcus radiudurans, Xylella fastidiosa, etc.) appear more closely related to each other than to animal forms. However, the bacterial species lack convincing counterparts the Kv alpha subunit and the Kv beta homolog may serve as an enzyme. Cutoffs are set for this model such that yeast and plant forms and bacterial close homologs score between trusted and noise cutoffs.
Probab=100.00 E-value=3.8e-35 Score=243.36 Aligned_cols=149 Identities=26% Similarity=0.436 Sum_probs=129.4
Q ss_pred eecCCCCcCCcccccccc-----CCchhHHHHHHHHHHhCCceEeCCCCCC---CHHHHHHHHHHHhhcCCccccceEEE
Q 029874 3 ITLNNGFKMPIIGLGVWR-----MDESNIRDLIINAIKIGYRHIDCAADYR---NEAEVGEALAEAFSTGLVKREDLFIT 74 (186)
Q Consensus 3 ~~~~tg~~v~~lglG~~~-----~~~~~~~~~l~~a~~~Gi~~~Dta~~Yg---~e~~vG~~l~~~~~~~~~~R~~~~i~ 74 (186)
..|++|++||+||||||+ .+.+++.++++.|+++|||+||||+.|| ||..+|++|++. + .+|++++|+
T Consensus 3 ~lg~tg~~vs~lglGt~~~~g~~~~~~~a~~~l~~al~~Gi~~~DTA~~Yg~g~sE~~lG~~l~~~---~-~~R~~~~ia 78 (317)
T TIGR01293 3 NLGKSGLRVSCLGLGTWVTFGGQISDEMAEQLLTLAYENGINLFDTAEVYAAGKAEVVLGNILKKK---G-WRRSSYVIT 78 (317)
T ss_pred ccCCCCCeecceeecCCccCCCCCCHHHHHHHHHHHHHcCCCeEECccccCCCccHHHHHHHHHhc---C-CCcccEEEE
Confidence 468899999999999986 3567899999999999999999999997 799999999863 3 369999999
Q ss_pred eccC-C--------CChhHHHHHHHHHHHHhCCCcccEEEEecCCCCCCCCCCCCCCCCCCCCcccccccccHHHHHHHH
Q 029874 75 TKLW-N--------SDHGHVLEACKDSLKKLQLDYLDLYLVHFPVATKHTGVGTTDSALDADGVLEIDTTISLETTWHAM 145 (186)
Q Consensus 75 tK~~-~--------~~~~~i~~~~~~sl~~Lg~~~lDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 145 (186)
||++ . .+++.+++++++||++||+||+|+|++|||+.. .++.++|++|
T Consensus 79 TK~~~~~~~~~~~~~~~~~i~~~~~~SL~rL~td~iDl~~lH~~~~~-----------------------~~~~e~~~aL 135 (317)
T TIGR01293 79 TKIFWGGKAETERGLSRKHIIEGLKASLERLQLEYVDIVFANRPDPN-----------------------TPMEETVRAM 135 (317)
T ss_pred eeeccCCCCCCCCCCCHHHHHHHHHHHHHHhCCCcEeEEEeccCCCC-----------------------CCHHHHHHHH
Confidence 9973 2 257899999999999999999999999998643 2367899999
Q ss_pred HHHHHcCCccEEEecCCCchhHhhHHhhccCCC
Q 029874 146 EDLVSMGLVRSIGIRYVGILNPCEHSIRSSKFS 178 (186)
Q Consensus 146 ~~l~~~G~ir~iGvsn~~~~~l~~~~~~~~~~~ 178 (186)
++|+++|+||+||+|||+.+++.+.......|+
T Consensus 136 ~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~~ 168 (317)
T TIGR01293 136 TYVINQGMAMYWGTSRWSSMEIMEAYSVARQFN 168 (317)
T ss_pred HHHHHcCCeeEEEecCCCHHHHHHHHHHHHHcC
Confidence 999999999999999999999776655555565
No 6
>PRK11172 dkgB 2,5-diketo-D-gluconate reductase B; Provisional
Probab=100.00 E-value=7.4e-35 Score=236.37 Aligned_cols=137 Identities=39% Similarity=0.681 Sum_probs=121.6
Q ss_pred cCCccccccccCCchhHHHHHHHHHHhCCceEeCCCCCCCHHHHHHHHHHHhhcCCccccceEEEeccCCC--ChhHHHH
Q 029874 10 KMPIIGLGVWRMDESNIRDLIINAIKIGYRHIDCAADYRNEAEVGEALAEAFSTGLVKREDLFITTKLWNS--DHGHVLE 87 (186)
Q Consensus 10 ~v~~lglG~~~~~~~~~~~~l~~a~~~Gi~~~Dta~~Yg~e~~vG~~l~~~~~~~~~~R~~~~i~tK~~~~--~~~~i~~ 87 (186)
+||+||||||+++.+++.++++.|++.|+|+||||+.||+|..+|++|+.. + ++|++++|+||+|.. +++.+++
T Consensus 2 ~vs~lglGt~~~~~~~~~~~i~~A~~~Gi~~~DTA~~Yg~E~~lG~al~~~---~-~~R~~v~i~TK~~~~~~~~~~~~~ 77 (267)
T PRK11172 2 SIPAFGLGTFRLKDQVVIDSVKTALELGYRAIDTAQIYDNEAAVGQAIAES---G-VPRDELFITTKIWIDNLAKDKLIP 77 (267)
T ss_pred CCCCEeeEccccChHHHHHHHHHHHHcCCCEEEccchhCCHHHHHHHHHHc---C-CChhHeEEEEEeCCCCCCHHHHHH
Confidence 689999999999888999999999999999999999999999999999863 3 579999999999753 6889999
Q ss_pred HHHHHHHHhCCCcccEEEEecCCCCCCCCCCCCCCCCCCCCcccccccccHHHHHHHHHHHHHcCCccEEEecCCCchhH
Q 029874 88 ACKDSLKKLQLDYLDLYLVHFPVATKHTGVGTTDSALDADGVLEIDTTISLETTWHAMEDLVSMGLVRSIGIRYVGILNP 167 (186)
Q Consensus 88 ~~~~sl~~Lg~~~lDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvsn~~~~~l 167 (186)
++++||++||+||+|+|++|||+... ..+..++|++|++|+++|+||+||+|||+.+++
T Consensus 78 ~~~~SL~rL~~d~iDl~~lH~~~~~~---------------------~~~~~~~~~~l~~l~~~Gkir~iGvSn~~~~~l 136 (267)
T PRK11172 78 SLKESLQKLRTDYVDLTLIHWPSPND---------------------EVSVEEFMQALLEAKKQGLTREIGISNFTIALM 136 (267)
T ss_pred HHHHHHHHhCCCceEEEEeCCCCCCC---------------------CCCHHHHHHHHHHHHHCCCCCEEEEccCCHHHH
Confidence 99999999999999999999985321 123578999999999999999999999999885
Q ss_pred hhHH
Q 029874 168 CEHS 171 (186)
Q Consensus 168 ~~~~ 171 (186)
.+.+
T Consensus 137 ~~~~ 140 (267)
T PRK11172 137 KQAI 140 (267)
T ss_pred HHHH
Confidence 5544
No 7
>cd06660 Aldo_ket_red Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance to both health and industrial applications. Members have very distinct functions and include the prokaryotic 2,5-diketo-D-gluconic acid reductases and beta-keto ester reductases, the eukaryotic aldose reductases, aldehyde reductases, hydroxysteroid dehydrogenases, steroid 5beta-reductases, potassium channel beta-subunits and aflatoxin aldehyde reductases, among others.
Probab=100.00 E-value=5.8e-34 Score=232.20 Aligned_cols=155 Identities=32% Similarity=0.540 Sum_probs=133.9
Q ss_pred eecCCCCcCCccccccccCCc-----hhHHHHHHHHHHhCCceEeCCCCCC---CHHHHHHHHHHHhhcCCccccceEEE
Q 029874 3 ITLNNGFKMPIIGLGVWRMDE-----SNIRDLIINAIKIGYRHIDCAADYR---NEAEVGEALAEAFSTGLVKREDLFIT 74 (186)
Q Consensus 3 ~~~~tg~~v~~lglG~~~~~~-----~~~~~~l~~a~~~Gi~~~Dta~~Yg---~e~~vG~~l~~~~~~~~~~R~~~~i~ 74 (186)
..++||.+||+||||+|.+.. +++.+++..|++.|||+||||+.|| +|..+|++|++. + .|++++|+
T Consensus 3 ~lg~tg~~vs~lg~G~~~~~~~~~~~~~~~~~l~~A~~~Gi~~iDTA~~Yg~g~sE~~lG~al~~~---~--~R~~~~i~ 77 (285)
T cd06660 3 TLGKTGLKVSRLGLGTWQLGGGYVDEEEAAAAVRAALDAGINFIDTADVYGDGESEELLGEALKER---G--PREEVFIA 77 (285)
T ss_pred ccCCCCceecCcceeccccCCCCCCHHHHHHHHHHHHHcCCCeEECccccCCCCCHHHHHHHHhcc---C--CcCcEEEE
Confidence 456799999999999998743 7899999999999999999999998 899999999984 1 49999999
Q ss_pred eccCCC-------ChhHHHHHHHHHHHHhCCCcccEEEEecCCCCCCCCCCCCCCCCCCCCcccccccccHHHHHHHHHH
Q 029874 75 TKLWNS-------DHGHVLEACKDSLKKLQLDYLDLYLVHFPVATKHTGVGTTDSALDADGVLEIDTTISLETTWHAMED 147 (186)
Q Consensus 75 tK~~~~-------~~~~i~~~~~~sl~~Lg~~~lDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 147 (186)
||++.. +++.+++++++||++||++|+|+|++|||+.... ...++|++|++
T Consensus 78 tK~~~~~~~~~~~~~~~~~~~l~~sL~~L~~~~iDl~~lh~~~~~~~----------------------~~~~~~~~l~~ 135 (285)
T cd06660 78 TKVGPRPGDGRDLSPEHIRRAVEESLKRLGTDYIDLYLLHWPDPDTP----------------------DIEETLRALEE 135 (285)
T ss_pred eeecCCCCCCCCCCHHHHHHHHHHHHHHhCCCceeEEEecCCCCCCC----------------------CHHHHHHHHHH
Confidence 999755 6899999999999999999999999999865411 26789999999
Q ss_pred HHHcCCccEEEecCCCchhHhhHHhhc--cCCCCCcceee
Q 029874 148 LVSMGLVRSIGIRYVGILNPCEHSIRS--SKFSTKFIIVT 185 (186)
Q Consensus 148 l~~~G~ir~iGvsn~~~~~l~~~~~~~--~~~~~~~~~~~ 185 (186)
++++|+||+||+|||+.+. +..++.. .+|++....+|
T Consensus 136 l~~~G~ir~iGvS~~~~~~-l~~~~~~~~~~~~~~q~~~n 174 (285)
T cd06660 136 LVKEGKIRAIGVSNFSAEQ-LEEALAAAGVPPAVNQVEYN 174 (285)
T ss_pred HHHcCCccEEEeeCCCHHH-HHHHHHhhCCCceEEecccC
Confidence 9999999999999999777 5555555 67776666554
No 8
>PLN02587 L-galactose dehydrogenase
Probab=100.00 E-value=7.9e-34 Score=235.15 Aligned_cols=141 Identities=26% Similarity=0.351 Sum_probs=122.2
Q ss_pred eecCCCCcCCccccccccC-------CchhHHHHHHHHHHhCCceEeCCCCCC---CHHHHHHHHHHHhhcCCccccceE
Q 029874 3 ITLNNGFKMPIIGLGVWRM-------DESNIRDLIINAIKIGYRHIDCAADYR---NEAEVGEALAEAFSTGLVKREDLF 72 (186)
Q Consensus 3 ~~~~tg~~v~~lglG~~~~-------~~~~~~~~l~~a~~~Gi~~~Dta~~Yg---~e~~vG~~l~~~~~~~~~~R~~~~ 72 (186)
..|+||++||+||||||++ +.+++.++++.|+++|+|+||||+.|| +|..+|++|++. + ++|++++
T Consensus 3 ~lg~t~~~vs~lglG~~~~g~~~~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~sE~~lG~al~~~---~-~~R~~v~ 78 (314)
T PLN02587 3 ELGSTGLKVSSVGFGASPLGSVFGPVSEEDAIASVREAFRLGINFFDTSPYYGGTLSEKVLGKALKAL---G-IPREKYV 78 (314)
T ss_pred cCCCCCCcccCcccccccccCCCCCCCHHHHHHHHHHHHHcCCCEEECcCccCCCchHHHHHHHHHhC---C-CCcceEE
Confidence 4689999999999999864 467789999999999999999999997 599999999873 2 4799999
Q ss_pred EEeccCC------CChhHHHHHHHHHHHHhCCCcccEEEEecCCCCCCCCCCCCCCCCCCCCcccccccccHHHHHHHHH
Q 029874 73 ITTKLWN------SDHGHVLEACKDSLKKLQLDYLDLYLVHFPVATKHTGVGTTDSALDADGVLEIDTTISLETTWHAME 146 (186)
Q Consensus 73 i~tK~~~------~~~~~i~~~~~~sl~~Lg~~~lDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 146 (186)
|+||++. .+++.+++++++||++||+||+|+|++|||+... +..++.++|++|+
T Consensus 79 I~TK~~~~~~~~~~~~~~i~~~~e~SL~rL~~d~iDl~~lH~~~~~~--------------------~~~~~~~~~~~l~ 138 (314)
T PLN02587 79 VSTKCGRYGEGFDFSAERVTKSVDESLARLQLDYVDILHCHDIEFGS--------------------LDQIVNETIPALQ 138 (314)
T ss_pred EEeccccCCCCCCCCHHHHHHHHHHHHHHhCCCCeeEEEecCCCCcc--------------------hhhhHHHHHHHHH
Confidence 9999863 2688999999999999999999999999985321 1123568999999
Q ss_pred HHHHcCCccEEEecCCCchhH
Q 029874 147 DLVSMGLVRSIGIRYVGILNP 167 (186)
Q Consensus 147 ~l~~~G~ir~iGvsn~~~~~l 167 (186)
+|+++|+||+||+|||+.+++
T Consensus 139 ~l~~~Gkir~iGvSn~~~~~~ 159 (314)
T PLN02587 139 KLKESGKVRFIGITGLPLAIF 159 (314)
T ss_pred HHHHCCCeEEEEecCCCHHHH
Confidence 999999999999999988764
No 9
>PRK10625 tas putative aldo-keto reductase; Provisional
Probab=100.00 E-value=7.6e-34 Score=238.13 Aligned_cols=159 Identities=30% Similarity=0.427 Sum_probs=126.9
Q ss_pred eeecCCCCcCCccccccccC----CchhHHHHHHHHHHhCCceEeCCCCCC----------CHHHHHHHHHHHhhcCCcc
Q 029874 2 AITLNNGFKMPIIGLGVWRM----DESNIRDLIINAIKIGYRHIDCAADYR----------NEAEVGEALAEAFSTGLVK 67 (186)
Q Consensus 2 ~~~~~tg~~v~~lglG~~~~----~~~~~~~~l~~a~~~Gi~~~Dta~~Yg----------~e~~vG~~l~~~~~~~~~~ 67 (186)
+..|+||++||+||||||++ +.+++.+++..|+++|||+||||+.|| +|..+|++|++. + +
T Consensus 4 r~lg~t~~~vs~iglGt~~~g~~~~~~~a~~~l~~al~~Gi~~~DTA~~Yg~~~~~~~~g~sE~~iG~aL~~~---~--~ 78 (346)
T PRK10625 4 HRIPHSSLEVSTLGLGTMTFGEQNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPETQGLTETYIGNWLAKR---G--S 78 (346)
T ss_pred eecCCCCCccccEeEeccccCCCCCHHHHHHHHHHHHHcCCCEEECccccCCCcCCCCCCchHHHHHHHHhhc---C--C
Confidence 35689999999999999976 457889999999999999999999996 899999999863 3 6
Q ss_pred ccceEEEeccCC--------------CChhHHHHHHHHHHHHhCCCcccEEEEecCCCCCCCCCCCCCCCCCCCCccccc
Q 029874 68 REDLFITTKLWN--------------SDHGHVLEACKDSLKKLQLDYLDLYLVHFPVATKHTGVGTTDSALDADGVLEID 133 (186)
Q Consensus 68 R~~~~i~tK~~~--------------~~~~~i~~~~~~sl~~Lg~~~lDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~ 133 (186)
|++++|+||++. .+++.+++++++||++||++|||+|++|||+..... .+........ ..
T Consensus 79 R~~v~i~TK~~~~~~~~~~~~~~~~~~s~~~i~~~~e~SL~rL~~d~iDl~~lH~p~~~~~~-~~~~~~~~~~-----~~ 152 (346)
T PRK10625 79 REKLIIASKVSGPSRNNDKGIRPNQALDRKNIREALHDSLKRLQTDYLDLYQVHWPQRPTNC-FGKLGYSWTD-----SA 152 (346)
T ss_pred cceEEEEcccccCCcCCCCCcCCCCCCCHHHHHHHHHHHHHHhCCCeEeEEEeeccCccccc-cccccccccc-----cc
Confidence 999999999852 257899999999999999999999999998642100 0000000000 01
Q ss_pred ccccHHHHHHHHHHHHHcCCccEEEecCCCchhHhhHH
Q 029874 134 TTISLETTWHAMEDLVSMGLVRSIGIRYVGILNPCEHS 171 (186)
Q Consensus 134 ~~~~~~~~~~~l~~l~~~G~ir~iGvsn~~~~~l~~~~ 171 (186)
+..++.++|++|++|+++|+||+||+|||+.+++.+.+
T Consensus 153 ~~~~~~e~~~aL~~l~~~GkIr~iGvSn~~~~~l~~~~ 190 (346)
T PRK10625 153 PAVSLLETLDALAEQQRAGKIRYIGVSNETAFGVMRYL 190 (346)
T ss_pred CCCCHHHHHHHHHHHHHCCCeEEEEecCCCHHHHHHHH
Confidence 12347899999999999999999999999999865544
No 10
>PRK09912 L-glyceraldehyde 3-phosphate reductase; Provisional
Probab=100.00 E-value=1.1e-33 Score=237.29 Aligned_cols=141 Identities=26% Similarity=0.421 Sum_probs=121.4
Q ss_pred eecCCCCcCCcccccccc-C----CchhHHHHHHHHHHhCCceEeCCCCCC-----CHHHHHHHHHHHhhcCCccccceE
Q 029874 3 ITLNNGFKMPIIGLGVWR-M----DESNIRDLIINAIKIGYRHIDCAADYR-----NEAEVGEALAEAFSTGLVKREDLF 72 (186)
Q Consensus 3 ~~~~tg~~v~~lglG~~~-~----~~~~~~~~l~~a~~~Gi~~~Dta~~Yg-----~e~~vG~~l~~~~~~~~~~R~~~~ 72 (186)
..|+||++||+||||||+ . +.+++.++++.|+++|||+||||+.|| +|..+|++|+.. ...+|++++
T Consensus 17 ~lg~tg~~vs~lglG~~~~~g~~~~~~~~~~~l~~A~~~Gin~~DTA~~YG~~~g~sE~~lG~~l~~~---~~~~Rd~~~ 93 (346)
T PRK09912 17 YCGKSGLRLPALSLGLWHNFGHVNALESQRAILRKAFDLGITHFDLANNYGPPPGSAEENFGRLLRED---FAAYRDELI 93 (346)
T ss_pred ecCCCCcccccccccCccccCCCCCHHHHHHHHHHHHHCCCCEEEChhhhCCCCCCcHHHHHHHHHhc---ccCCCCeEE
Confidence 468999999999999996 3 345678999999999999999999998 599999999863 112699999
Q ss_pred EEeccC----C------CChhHHHHHHHHHHHHhCCCcccEEEEecCCCCCCCCCCCCCCCCCCCCcccccccccHHHHH
Q 029874 73 ITTKLW----N------SDHGHVLEACKDSLKKLQLDYLDLYLVHFPVATKHTGVGTTDSALDADGVLEIDTTISLETTW 142 (186)
Q Consensus 73 i~tK~~----~------~~~~~i~~~~~~sl~~Lg~~~lDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (186)
|+||++ + .+++.+++++++||++||+||+|+|++|||+.. .++.++|
T Consensus 94 I~TK~g~~~~~~~~~~~~s~~~i~~~~e~SL~rLg~d~iDl~~lH~~~~~-----------------------~~~~e~~ 150 (346)
T PRK09912 94 ISTKAGYDMWPGPYGSGGSRKYLLASLDQSLKRMGLEYVDIFYSHRVDEN-----------------------TPMEETA 150 (346)
T ss_pred EEEEecccCCCCcCCCCCCHHHHHHHHHHHHHHHCCCcEEEEEeCCCCCC-----------------------CCHHHHH
Confidence 999963 2 247889999999999999999999999998542 2367899
Q ss_pred HHHHHHHHcCCccEEEecCCCchhHhh
Q 029874 143 HAMEDLVSMGLVRSIGIRYVGILNPCE 169 (186)
Q Consensus 143 ~~l~~l~~~G~ir~iGvsn~~~~~l~~ 169 (186)
++|++|+++|+||+||||||+.+++.+
T Consensus 151 ~al~~l~~~GkIr~iGvSn~~~~~~~~ 177 (346)
T PRK09912 151 SALAHAVQSGKALYVGISSYSPERTQK 177 (346)
T ss_pred HHHHHHHHcCCeeEEEecCCCHHHHHH
Confidence 999999999999999999999988543
No 11
>PRK10376 putative oxidoreductase; Provisional
Probab=100.00 E-value=2.8e-33 Score=229.60 Aligned_cols=153 Identities=24% Similarity=0.311 Sum_probs=124.9
Q ss_pred eeecCCCCcCCccccccccCC----------chhHHHHHHHHHHhCCceEeCCCCCC---CHHHHHHHHHHHhhcCCccc
Q 029874 2 AITLNNGFKMPIIGLGVWRMD----------ESNIRDLIINAIKIGYRHIDCAADYR---NEAEVGEALAEAFSTGLVKR 68 (186)
Q Consensus 2 ~~~~~tg~~v~~lglG~~~~~----------~~~~~~~l~~a~~~Gi~~~Dta~~Yg---~e~~vG~~l~~~~~~~~~~R 68 (186)
++.++ |.+||+||||||+++ ++++.+++..|+++|||+||||+.|| +|..+|++++. .|
T Consensus 9 ~~~l~-g~~vs~iglG~~~lg~~~~~g~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~~~sE~~lg~~l~~-------~R 80 (290)
T PRK10376 9 TFTLG-GRSVNRLGYGAMQLAGPGVFGPPKDRDAAIAVLREAVALGVNHIDTSDFYGPHVTNQLIREALHP-------YP 80 (290)
T ss_pred ceecC-CeeecccceeccccCCCCcCCCCCCHHHHHHHHHHHHHcCCCeEEChhhcCCCcHHHHHHHHHhc-------CC
Confidence 45555 999999999999763 46689999999999999999999998 48899999964 58
Q ss_pred cceEEEeccCC-----------CChhHHHHHHHHHHHHhCCCcccEEEEecCCCCCCCCCCCCCCCCCCCCccccccccc
Q 029874 69 EDLFITTKLWN-----------SDHGHVLEACKDSLKKLQLDYLDLYLVHFPVATKHTGVGTTDSALDADGVLEIDTTIS 137 (186)
Q Consensus 69 ~~~~i~tK~~~-----------~~~~~i~~~~~~sl~~Lg~~~lDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (186)
++++|+||+.. .+++.+++++++||++||++|+|+|++||+.... .+...+
T Consensus 81 ~~~~i~TK~g~~~~~~~~~~~~~~~~~i~~~~e~SL~rL~td~iDl~~~H~~~~~h------------------~p~~~~ 142 (290)
T PRK10376 81 DDLTIVTKVGARRGEDGSWLPAFSPAELRRAVHDNLRNLGLDVLDVVNLRLMGDGH------------------GPAEGS 142 (290)
T ss_pred CeEEEEeeecccCCCCCccCCCCCHHHHHHHHHHHHHHhCCCeEEEEEEeccCCCC------------------CCCCCC
Confidence 99999999731 2578999999999999999999999999963210 011123
Q ss_pred HHHHHHHHHHHHHcCCccEEEecCCCchhHhhHHhhccCCCCCc
Q 029874 138 LETTWHAMEDLVSMGLVRSIGIRYVGILNPCEHSIRSSKFSTKF 181 (186)
Q Consensus 138 ~~~~~~~l~~l~~~G~ir~iGvsn~~~~~l~~~~~~~~~~~~~~ 181 (186)
+.++|++|++|+++|+||+||+|||+.+++ +.+.+...++...
T Consensus 143 ~~~~~~~l~~l~~~Gkir~iGvSn~~~~~l-~~~~~~~~~~~~q 185 (290)
T PRK10376 143 IEEPLTVLAELQRQGLVRHIGLSNVTPTQV-AEARKIAEIVCVQ 185 (290)
T ss_pred HHHHHHHHHHHHHCCceeEEEecCCCHHHH-HHHHhhCCeEEEe
Confidence 678999999999999999999999999885 4555666665433
No 12
>KOG1575 consensus Voltage-gated shaker-like K+ channel, subunit beta/KCNAB [Energy production and conversion]
Probab=100.00 E-value=4.2e-32 Score=223.05 Aligned_cols=152 Identities=30% Similarity=0.439 Sum_probs=131.6
Q ss_pred ecCCCCcCCccccccc-------cCCchhHHHHHHHHHHhCCceEeCCCCCC---CHHHHHHHHHHHhhcCCccccceEE
Q 029874 4 TLNNGFKMPIIGLGVW-------RMDESNIRDLIINAIKIGYRHIDCAADYR---NEAEVGEALAEAFSTGLVKREDLFI 73 (186)
Q Consensus 4 ~~~tg~~v~~lglG~~-------~~~~~~~~~~l~~a~~~Gi~~~Dta~~Yg---~e~~vG~~l~~~~~~~~~~R~~~~i 73 (186)
.|++|++||++|||+| +.+++++.+++.+|+++|+|+||||..|| ||..+|++|++. + .+|++++|
T Consensus 17 lg~~gl~Vs~lglG~m~~~~~~~~~~~e~a~~~m~~a~e~Gin~fDtAe~Yg~~~~E~llg~~i~~~---~-~~R~~vvi 92 (336)
T KOG1575|consen 17 LGNSGLKVSPLGLGCMGWTTFGGQIDKEEAFELLDHAYEAGINFFDTAEVYGNGQSEELLGEFIKSR---G-WRRDKVVI 92 (336)
T ss_pred ccCCCceecceeecceeeeccccCCCHHHHHHHHHHHHHcCCCEEehhhhcCCcccHHHHHHHHHhc---C-CcCCcEEE
Confidence 5678899999999983 23788999999999999999999999998 799999999985 3 58999999
Q ss_pred EeccCCC---------ChhHHHHHHHHHHHHhCCCcccEEEEecCCCCCCCCCCCCCCCCCCCCcccccccccHHHHHHH
Q 029874 74 TTKLWNS---------DHGHVLEACKDSLKKLQLDYLDLYLVHFPVATKHTGVGTTDSALDADGVLEIDTTISLETTWHA 144 (186)
Q Consensus 74 ~tK~~~~---------~~~~i~~~~~~sl~~Lg~~~lDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (186)
+||++.. +...+...++.|+++||++|||+|++||+|.. .++++++++
T Consensus 93 aTK~~~~~~~~~~~G~~~~~i~~~~~~s~~rl~~~~IDl~q~Hr~D~~-----------------------~piee~m~a 149 (336)
T KOG1575|consen 93 ATKFGFDYGGETPRGLSRKHIIEGVRDSLRRLQTDYIDLLQVHRWDPM-----------------------VPIEETMRA 149 (336)
T ss_pred EEEEeccCCCcCCCCCcHHHHHHHHHHHHHhcCCCeeEEEEEcccCCC-----------------------CCHHHHHHH
Confidence 9998422 56889999999999999999999999998665 448899999
Q ss_pred HHHHHHcCCccEEEecCCCchhHhhHHhhccCCCCCcceee
Q 029874 145 MEDLVSMGLVRSIGIRYVGILNPCEHSIRSSKFSTKFIIVT 185 (186)
Q Consensus 145 l~~l~~~G~ir~iGvsn~~~~~l~~~~~~~~~~~~~~~~~~ 185 (186)
|.+++++|+||+||+|+++.+++.+++-... +|++.||
T Consensus 150 L~~lve~Gki~yiGlSe~sa~~I~~a~~~~~---~p~~s~Q 187 (336)
T KOG1575|consen 150 LTDLVEQGKIRYWGLSEWSAEEIREAHAVAP---IPIVAVQ 187 (336)
T ss_pred HHHHHhcCceEEEEeccCCHHHHHHHHHhcC---CCceEee
Confidence 9999999999999999999999666654443 5566555
No 13
>PRK14863 bifunctional regulator KidO; Provisional
Probab=99.98 E-value=3.2e-32 Score=223.55 Aligned_cols=150 Identities=19% Similarity=0.247 Sum_probs=122.4
Q ss_pred CCcCCccccccccCC--------------chhHHHHHHHHHHhCCceEeCCCCCC-CHHHHHHHHHHHhhcCCccccceE
Q 029874 8 GFKMPIIGLGVWRMD--------------ESNIRDLIINAIKIGYRHIDCAADYR-NEAEVGEALAEAFSTGLVKREDLF 72 (186)
Q Consensus 8 g~~v~~lglG~~~~~--------------~~~~~~~l~~a~~~Gi~~~Dta~~Yg-~e~~vG~~l~~~~~~~~~~R~~~~ 72 (186)
+++||+||||||+++ .+++.++++.|+++|||+||||+.|| +|..+|++|+. . .+.+++
T Consensus 2 ~~~vs~iglGt~~~g~~~~~~~~~~~~~~~~ea~~~l~~A~~~Gin~~DTA~~YG~SE~~lG~al~~----~--~~~~~~ 75 (292)
T PRK14863 2 SSPVSKLGLAAAQFGLDPGSSSAPRGRTPEAEARDILNIAARAGLSVLDASGLFGRAETVLGQLIPR----P--VPFRVT 75 (292)
T ss_pred CCcceeeeeeeeccCCCcccccCCCCCCCHHHHHHHHHHHHHcCCCEEecchhhhhHHHHHhhhhcc----C--CceEee
Confidence 578999999998663 46789999999999999999999999 79999999974 1 345788
Q ss_pred EEeccCCCChhHHHHHHHHHHHHhCCCcccEEEEecCCCCCCCCCCCCCCCCCCCCcccccccccHHHHHHHHHHHHHcC
Q 029874 73 ITTKLWNSDHGHVLEACKDSLKKLQLDYLDLYLVHFPVATKHTGVGTTDSALDADGVLEIDTTISLETTWHAMEDLVSMG 152 (186)
Q Consensus 73 i~tK~~~~~~~~i~~~~~~sl~~Lg~~~lDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G 152 (186)
++||....+++.+++++++||++||+||+|+|++|||+... . ....++|++|++|+++|
T Consensus 76 i~tk~~~~~~~~i~~~~e~SL~rLg~d~iDl~~lH~~~~~~-------------------~--~~~~~~~~~l~~l~~~G 134 (292)
T PRK14863 76 LSTVRADRGPDFVEAEARASLRRMGVERADAILVHSPTELF-------------------G--PHGAALWERLQALKDQG 134 (292)
T ss_pred cccccccccHHHHHHHHHHHHHHhCCCccCeEEEeCchhhc-------------------C--cchHHHHHHHHHHHHcC
Confidence 89986555789999999999999999999999999985320 0 01246899999999999
Q ss_pred CccEEEecCCCchhHhhHHhhccCCCCCcceee
Q 029874 153 LVRSIGIRYVGILNPCEHSIRSSKFSTKFIIVT 185 (186)
Q Consensus 153 ~ir~iGvsn~~~~~l~~~~~~~~~~~~~~~~~~ 185 (186)
+||+||+|||++.++. .+.+..+|+.....+|
T Consensus 135 kir~iGvSn~~~~~~~-~~~~~~~~~~~Q~~~n 166 (292)
T PRK14863 135 LFAKIGVSAHASDDPV-GVARRFKPDILQAPAS 166 (292)
T ss_pred CcceEeeeccCHHHHH-HHHhcCCCCEEEecCC
Confidence 9999999999998854 4455666665444443
No 14
>PF00248 Aldo_ket_red: Aldo/keto reductase family; InterPro: IPR023210 The aldo-keto reductase family includes a number of related monomeric NADPH-dependent oxidoreductases, such as aldehyde reductase, aldose reductase, prostaglandin F synthase, xylose reductase, rho crystallin, and many others []. All possess a similar structure, with a beta-alpha-beta fold characteristic of nucleotide binding proteins []. The fold comprises a parallel beta-8/alpha-8-barrel, which contains a novel NADP-binding motif. The binding site is located in a large, deep, elliptical pocket in the C-terminal end of the beta sheet, the substrate being bound in an extended conformation. The hydrophobic nature of the pocket favours aromatic and apolar substrates over highly polar ones []. Binding of the NADPH coenzyme causes a massive conformational change, reorienting a loop, effectively locking the coenzyme in place. This binding is more similar to FAD- than to NAD(P)-binding oxidoreductases []. Some proteins of this entry contain a K+ ion channel beta chain regulatory domain; these are reported to have oxidoreductase activity []. This entry represents the NADP-dependent oxidoreductase domain found in these proteins.; PDB: 1C9W_A 4F40_B 1VBJ_A 1XGD_A 1X97_A 2ACS_A 1EF3_A 2ACU_A 1PWM_A 2NVD_A ....
Probab=99.97 E-value=2.5e-31 Score=216.48 Aligned_cols=145 Identities=32% Similarity=0.538 Sum_probs=117.6
Q ss_pred ccccccccC-----CchhHHHHHHHHHHhCCceEeCCCCCC---CHHHHHHHHHHHhhcCCccccceEEEecc-------
Q 029874 13 IIGLGVWRM-----DESNIRDLIINAIKIGYRHIDCAADYR---NEAEVGEALAEAFSTGLVKREDLFITTKL------- 77 (186)
Q Consensus 13 ~lglG~~~~-----~~~~~~~~l~~a~~~Gi~~~Dta~~Yg---~e~~vG~~l~~~~~~~~~~R~~~~i~tK~------- 77 (186)
+||||||++ +.+++.++++.|++.|+|+||||+.|| +|..+|++|+. ...+|++++|+||+
T Consensus 1 ~l~lG~~~~~~~~~~~~~~~~~l~~a~~~Gin~~DtA~~Y~~g~sE~~lg~~l~~----~~~~r~~~~i~tK~~~~~~~~ 76 (283)
T PF00248_consen 1 PLGLGTWRLGGERVSEEEAEAILRRALEAGINFFDTADSYGNGRSERILGRALRK----SRVPRDDIFISTKVYGDGKPE 76 (283)
T ss_dssp SBEEECTTBTTTTSTHHHHHHHHHHHHHTT--EEEECGGGGGGTHHHHHHHHHHH----TSSTGGGSEEEEEEESSSSTG
T ss_pred CEEEEccccCCCCCCHHHHHHHHHHHHHcCCCeeccccccccccccccccccccc----ccccccccccccccccccccc
Confidence 589999854 678899999999999999999999993 79999999998 34699999999999
Q ss_pred CCCChhHHHHHHHHHHHHhCCCcccEEEEecCCCCCCCCCCCCCCCCCCCCcccccccccHHHHHHHHHHHHHcCCccEE
Q 029874 78 WNSDHGHVLEACKDSLKKLQLDYLDLYLVHFPVATKHTGVGTTDSALDADGVLEIDTTISLETTWHAMEDLVSMGLVRSI 157 (186)
Q Consensus 78 ~~~~~~~i~~~~~~sl~~Lg~~~lDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~i 157 (186)
...+++.+++++++||++||++|+|+|++|||+... ....++|++|++|+++|+||+|
T Consensus 77 ~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~----------------------~~~~~~~~~l~~l~~~G~ir~i 134 (283)
T PF00248_consen 77 PDYSPDSIRESLERSLERLGTDYIDLLLLHWPDPSE----------------------DALEEVWEALEELKKEGKIRHI 134 (283)
T ss_dssp GGSSHHHHHHHHHHHHHHHTSSSEEEEEESSSSTTS----------------------SHHHHHHHHHHHHHHTTSEEEE
T ss_pred ccccccccccccccccccccccchhccccccccccc----------------------cccchhhhhhhhcccccccccc
Confidence 344899999999999999999999999999997641 1378999999999999999999
Q ss_pred EecCCCchhHhhHH--hhccCCCCCccee
Q 029874 158 GIRYVGILNPCEHS--IRSSKFSTKFIIV 184 (186)
Q Consensus 158 Gvsn~~~~~l~~~~--~~~~~~~~~~~~~ 184 (186)
|||||+.+. ++.+ ....+|+.....+
T Consensus 135 Gvs~~~~~~-l~~~~~~~~~~~~~~q~~~ 162 (283)
T PF00248_consen 135 GVSNFSPEQ-LEAALKIGSIPPDVVQINY 162 (283)
T ss_dssp EEES--HHH-HHHHHTCTSS-ESEEEEE-
T ss_pred ccccccccc-ccccccccccccccccccc
Confidence 999999666 5555 3444444444333
No 15
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=99.97 E-value=1.8e-30 Score=212.98 Aligned_cols=157 Identities=26% Similarity=0.369 Sum_probs=136.7
Q ss_pred ecCCCCcCCccccccccC--------CchhHHHHHHHHHHhCCceEeCCCCC--C-CHHHHHHHHHHHhhcCCccccceE
Q 029874 4 TLNNGFKMPIIGLGVWRM--------DESNIRDLIINAIKIGYRHIDCAADY--R-NEAEVGEALAEAFSTGLVKREDLF 72 (186)
Q Consensus 4 ~~~tg~~v~~lglG~~~~--------~~~~~~~~l~~a~~~Gi~~~Dta~~Y--g-~e~~vG~~l~~~~~~~~~~R~~~~ 72 (186)
.++||.++|.+|||++++ +++.+.+.|.+|++.|||+||||..| | +|..+|+||+. + +|++++
T Consensus 6 ~~k~g~~~s~lgfG~MRlp~~~~~~id~~~~~~~i~~aie~GiNyidTA~~Yh~g~sE~~lgkaL~~----~--~Rekv~ 79 (391)
T COG1453 6 FPKTGDELSILGFGCMRLPLKEQGSIDEENANETIDYAIEHGINYIDTAWPYHGGESEEFLGKALKD----G--YREKVK 79 (391)
T ss_pred cCCCCcccceeccceeecccccCCCccHHHHHHHHHHHHHcCCceEeecccccCCCchHHHHHHhhh----c--ccceEE
Confidence 368999999999999876 45678999999999999999999999 6 79999999998 4 799999
Q ss_pred EEeccCCC---ChhHHHHHHHHHHHHhCCCcccEEEEecCCCCCCCCCCCCCCCCCCCCcccccccccHHHHHHHHHHHH
Q 029874 73 ITTKLWNS---DHGHVLEACKDSLKKLQLDYLDLYLVHFPVATKHTGVGTTDSALDADGVLEIDTTISLETTWHAMEDLV 149 (186)
Q Consensus 73 i~tK~~~~---~~~~i~~~~~~sl~~Lg~~~lDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 149 (186)
++||+..+ +++++++-++++|++|++||+|+|++|...... ++.... .++++.+++++
T Consensus 80 LaTKlp~~~~~~~edm~r~fneqLekl~~Dy~D~yliH~l~~e~------------------~~k~~~-~g~~df~~kak 140 (391)
T COG1453 80 LATKLPSWPVKDREDMERIFNEQLEKLGTDYIDYYLIHGLNTET------------------WEKIER-LGVFDFLEKAK 140 (391)
T ss_pred EEeecCCccccCHHHHHHHHHHHHHHhCCchhhhhhhccccHHH------------------HHHHHc-cChHHHHHHHH
Confidence 99999643 899999999999999999999999999875421 222222 23799999999
Q ss_pred HcCCccEEEecCCCchhHhhHHhhccCCCCCcceee
Q 029874 150 SMGLVRSIGIRYVGILNPCEHSIRSSKFSTKFIIVT 185 (186)
Q Consensus 150 ~~G~ir~iGvsn~~~~~l~~~~~~~~~~~~~~~~~~ 185 (186)
++|+||++|+|.|++..+...++.+.++|.+...+|
T Consensus 141 ~eGkIr~~GFSfHgs~e~~~~iv~a~~~dfvqlq~n 176 (391)
T COG1453 141 AEGKIRNAGFSFHGSTEVFKEIVDAYPWDFVQLQYN 176 (391)
T ss_pred hcCcEEEeeecCCCCHHHHHHHHhcCCcceEEeeee
Confidence 999999999999999999999999999997666554
No 16
>KOG1576 consensus Predicted oxidoreductase [Energy production and conversion]
Probab=99.96 E-value=1.3e-29 Score=200.25 Aligned_cols=148 Identities=30% Similarity=0.381 Sum_probs=126.4
Q ss_pred eeecCCCCcCCccccccccC-------CchhHHHHHHHHHHhCCceEeCCCCCC---CHHHHHHHHHHHhhcCCccccce
Q 029874 2 AITLNNGFKMPIIGLGVWRM-------DESNIRDLIINAIKIGYRHIDCAADYR---NEAEVGEALAEAFSTGLVKREDL 71 (186)
Q Consensus 2 ~~~~~tg~~v~~lglG~~~~-------~~~~~~~~l~~a~~~Gi~~~Dta~~Yg---~e~~vG~~l~~~~~~~~~~R~~~ 71 (186)
+..|+||++||+||||+..+ ++++....+..|++.|||+||||+.|| +|..+|.++++ +||+.+
T Consensus 25 R~lg~tgl~VSk~~fGga~L~~~fgd~~~e~~i~tv~eA~k~GINyiDTsp~Ygqs~se~~lg~al~~------vPR~aY 98 (342)
T KOG1576|consen 25 RQLGSTGLRVSKLGFGGAALGQLFGDEDEEEGILTVIEAFKSGINYIDTSPYYGQSRSEEGLGLALKD------VPREAY 98 (342)
T ss_pred hhcCCCcceeeeeeecchhhhhhcCCcchhhhHHHHHHHHHccccceecCcccCcchhHHHHHHHHhh------CChhhe
Confidence 35789999999999998543 567777778889999999999999998 79999999998 699999
Q ss_pred EEEeccCCC----------ChhHHHHHHHHHHHHhCCCcccEEEEecCCCCCCCCCCCCCCCCCCCCcccccccccHHHH
Q 029874 72 FITTKLWNS----------DHGHVLEACKDSLKKLQLDYLDLYLVHFPVATKHTGVGTTDSALDADGVLEIDTTISLETT 141 (186)
Q Consensus 72 ~i~tK~~~~----------~~~~i~~~~~~sl~~Lg~~~lDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (186)
+|+||+... +++.+++++++||++|+++|+|++++|..+... +-+..+.++
T Consensus 99 yIaTKvgRy~ld~~~~FdfsadkvreSv~rSlerLqldyvDilqiHDvefap-------------------~ld~vl~Et 159 (342)
T KOG1576|consen 99 YIATKVGRYELDYANMFDFSADKVRESVKRSLERLQLDYVDILQIHDVEFAP-------------------NLDIVLNET 159 (342)
T ss_pred eeeeeeeecccCccccccchHHHHHHHHHHHHHHhCCceeEEEEeecccccc-------------------cccHHHHHH
Confidence 999999543 689999999999999999999999999887652 222347899
Q ss_pred HHHHHHHHHcCCccEEEecCCCchhHhhHHhhcc
Q 029874 142 WHAMEDLVSMGLVRSIGIRYVGILNPCEHSIRSS 175 (186)
Q Consensus 142 ~~~l~~l~~~G~ir~iGvsn~~~~~l~~~~~~~~ 175 (186)
..+|+++|++|++|+||++.+...- ...+++.+
T Consensus 160 lp~Le~lk~~Gk~RfiGitgypldv-l~~~ae~~ 192 (342)
T KOG1576|consen 160 LPALEELKQEGKIRFIGITGYPLDV-LTECAERG 192 (342)
T ss_pred HHHHHHHHhcCceeEeeecccchHH-HHHHHhcC
Confidence 9999999999999999999988776 45554544
No 17
>COG4989 Predicted oxidoreductase [General function prediction only]
Probab=99.95 E-value=3.1e-28 Score=190.87 Aligned_cols=135 Identities=31% Similarity=0.439 Sum_probs=120.2
Q ss_pred cCCCCcCCccccccccC-----CchhHHHHHHHHHHhCCceEeCCCCCC---CHHHHHHHHHHHhhcCCccccceEEEec
Q 029874 5 LNNGFKMPIIGLGVWRM-----DESNIRDLIINAIKIGYRHIDCAADYR---NEAEVGEALAEAFSTGLVKREDLFITTK 76 (186)
Q Consensus 5 ~~tg~~v~~lglG~~~~-----~~~~~~~~l~~a~~~Gi~~~Dta~~Yg---~e~~vG~~l~~~~~~~~~~R~~~~i~tK 76 (186)
++.|+++|++.+|+|++ +..+....+..|++.|||+||-|+.|| .|..+|++|+-. +-.|+++.|.||
T Consensus 7 ~~~~~e~Sriv~G~wRl~d~~~~~~e~~~~Ie~~le~Gitt~DhADIYGgy~cE~~fg~aL~l~----p~lRekieivsK 82 (298)
T COG4989 7 APDGLEFSRIVLGYWRLNDWNMSARELLSFIETALELGITTFDHADIYGGYQCEALFGEALKLA----PGLREKIEIVSK 82 (298)
T ss_pred cCCCccHHHHHHHHHhhhhccCCHHHHHHHHHHHHHcCcccchhhhhcCCccHHHHHHHHHhcC----hhhhhheEeeec
Confidence 44899999999999876 456888999999999999999999998 699999999862 337999999999
Q ss_pred cCC--------------CChhHHHHHHHHHHHHhCCCcccEEEEecCCCCCCCCCCCCCCCCCCCCcccccccccHHHHH
Q 029874 77 LWN--------------SDHGHVLEACKDSLKKLQLDYLDLYLVHFPVATKHTGVGTTDSALDADGVLEIDTTISLETTW 142 (186)
Q Consensus 77 ~~~--------------~~~~~i~~~~~~sl~~Lg~~~lDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (186)
+.. .+.++|..+++.||++|++||+|++++|.|+.-. .-+++.
T Consensus 83 CGI~~~s~~~~~~~hydts~~HI~~SVe~SL~~L~tDylD~LLiHRPDpLm-----------------------d~eeVA 139 (298)
T COG4989 83 CGIRLPSREEPRIGHYDTSKEHIIKSVEQSLINLKTDYLDLLLIHRPDPLM-----------------------DAEEVA 139 (298)
T ss_pred cccccccccccccccccCcHHHHHHHHHHHHHHhccchhhhhhccCCcccC-----------------------CHHHHH
Confidence 832 2689999999999999999999999999997652 257899
Q ss_pred HHHHHHHHcCCccEEEecCCCchh
Q 029874 143 HAMEDLVSMGLVRSIGIRYVGILN 166 (186)
Q Consensus 143 ~~l~~l~~~G~ir~iGvsn~~~~~ 166 (186)
+|+..|++.||||+.|||||++.+
T Consensus 140 eAf~~L~~sGKVr~fGVSNf~p~Q 163 (298)
T COG4989 140 EAFTHLHKSGKVRHFGVSNFNPAQ 163 (298)
T ss_pred HHHHHHHhcCCeeeeecCCCCHHH
Confidence 999999999999999999999998
No 18
>KOG3023 consensus Glutamate-cysteine ligase regulatory subunit [Amino acid transport and metabolism]
Probab=96.91 E-value=0.0012 Score=52.51 Aligned_cols=53 Identities=25% Similarity=0.359 Sum_probs=42.4
Q ss_pred cccccHHHHHHHHHHHHHcCCccEEEecCCCchhHhhHHhhccCCCCCcceeeC
Q 029874 133 DTTISLETTWHAMEDLVSMGLVRSIGIRYVGILNPCEHSIRSSKFSTKFIIVTL 186 (186)
Q Consensus 133 ~~~~~~~~~~~~l~~l~~~G~ir~iGvsn~~~~~l~~~~~~~~~~~~~~~~~~~ 186 (186)
.+...++..|+.||+++.+|+|..||+|.|+..+ .+.++.+...-.-...|||
T Consensus 150 ~~~e~lkplwk~LE~lv~~~kI~~lGvSDfda~q-Le~Li~saqVvP~snqVnL 202 (285)
T KOG3023|consen 150 QEIESLKPLWKLLEELVGEGKIGTLGVSDFDANQ-LERLISSAQVVPESNQVNL 202 (285)
T ss_pred hhHHHHHHHHHHHHHHhccCceeeeeecccCHHH-HHHHHhhhccccccceeec
Confidence 4456788999999999999999999999999999 6777777665544444443
No 19
>PRK05283 deoxyribose-phosphate aldolase; Provisional
Probab=78.42 E-value=22 Score=28.93 Aligned_cols=87 Identities=16% Similarity=0.082 Sum_probs=57.0
Q ss_pred CccccccccCCch-hHHHHHHHHHHhCCceEeCCCCCC---CHHHHHHHHHHHhhc-CCccccceEEEecc--CCCChhH
Q 029874 12 PIIGLGVWRMDES-NIRDLIINAIKIGYRHIDCAADYR---NEAEVGEALAEAFST-GLVKREDLFITTKL--WNSDHGH 84 (186)
Q Consensus 12 ~~lglG~~~~~~~-~~~~~l~~a~~~Gi~~~Dta~~Yg---~e~~vG~~l~~~~~~-~~~~R~~~~i~tK~--~~~~~~~ 84 (186)
-++.+=+..++++ +...+.+.|.++|..|+=||..|+ .-..--+.+++.+.+ + .... +..|. ...+.++
T Consensus 134 lKVIlEt~~L~~ee~i~~a~~~a~~aGADFVKTSTGf~~~gAt~edv~lm~~~i~~~~--~~~~--vgIKAsGGIrt~~~ 209 (257)
T PRK05283 134 LKVIIETGELKDEALIRKASEIAIKAGADFIKTSTGKVPVNATLEAARIMLEVIRDMG--VAKT--VGFKPAGGVRTAED 209 (257)
T ss_pred EEEEEeccccCCHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHHHhcc--cCCC--eeEEccCCCCCHHH
Confidence 3445555556666 488899999999999999999995 222222223332110 1 1122 44454 4458899
Q ss_pred HHHHHHHHHHHhCCCccc
Q 029874 85 VLEACKDSLKKLQLDYLD 102 (186)
Q Consensus 85 i~~~~~~sl~~Lg~~~lD 102 (186)
..+-++..-+.||.+|++
T Consensus 210 A~~~i~ag~~~lg~~~~~ 227 (257)
T PRK05283 210 AAQYLALADEILGADWAD 227 (257)
T ss_pred HHHHHHHHHHHhChhhcC
Confidence 999999999999988776
No 20
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=77.24 E-value=37 Score=27.44 Aligned_cols=40 Identities=25% Similarity=0.385 Sum_probs=29.0
Q ss_pred CCCCcCCccccccccC---C------chhH----HHHHHHHHHhCCceEeCCC
Q 029874 6 NNGFKMPIIGLGVWRM---D------ESNI----RDLIINAIKIGYRHIDCAA 45 (186)
Q Consensus 6 ~tg~~v~~lglG~~~~---~------~~~~----~~~l~~a~~~Gi~~~Dta~ 45 (186)
.+|+.+|.++|.+++. + .+++ .+++..|.+.|||.|--|.
T Consensus 65 etgv~ipSmClSaHRRfPfGS~D~~~r~~aleiM~KaI~LA~dLGIRtIQLAG 117 (287)
T COG3623 65 ETGVRIPSMCLSAHRRFPFGSKDEATRQQALEIMEKAIQLAQDLGIRTIQLAG 117 (287)
T ss_pred HhCCCccchhhhhhccCCCCCCCHHHHHHHHHHHHHHHHHHHHhCceeEeecc
Confidence 4799999999999743 1 2333 4555666688999998774
No 21
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=76.72 E-value=27 Score=27.46 Aligned_cols=78 Identities=9% Similarity=0.074 Sum_probs=52.5
Q ss_pred ccccccCCchhHHHHHHHHHHhCCceEeCCCCCC---CHHHHHHHHHHHhhcCCccccceEEEecc--CCCChhHHHHHH
Q 029874 15 GLGVWRMDESNIRDLIINAIKIGYRHIDCAADYR---NEAEVGEALAEAFSTGLVKREDLFITTKL--WNSDHGHVLEAC 89 (186)
Q Consensus 15 glG~~~~~~~~~~~~l~~a~~~Gi~~~Dta~~Yg---~e~~vG~~l~~~~~~~~~~R~~~~i~tK~--~~~~~~~i~~~~ 89 (186)
.+-+..++.++...+.+.|.++|..++=|++.|+ .-..--+.+++. -+.. +..|. ...+.++..+-+
T Consensus 123 IlE~~~L~~~ei~~a~~ia~eaGADfvKTsTGf~~~gat~~dv~~m~~~------v~~~--v~IKaaGGirt~~~a~~~i 194 (211)
T TIGR00126 123 IIETGLLTDEEIRKACEICIDAGADFVKTSTGFGAGGATVEDVRLMRNT------VGDT--IGVKASGGVRTAEDAIAMI 194 (211)
T ss_pred EEecCCCCHHHHHHHHHHHHHhCCCEEEeCCCCCCCCCCHHHHHHHHHH------hccC--CeEEEeCCCCCHHHHHHHH
Confidence 3444446777788999999999999999999985 111111233332 1222 33343 344788899999
Q ss_pred HHHHHHhCCCc
Q 029874 90 KDSLKKLQLDY 100 (186)
Q Consensus 90 ~~sl~~Lg~~~ 100 (186)
+..-.++|+++
T Consensus 195 ~aGa~riGts~ 205 (211)
T TIGR00126 195 EAGASRIGASA 205 (211)
T ss_pred HHhhHHhCcch
Confidence 99999999874
No 22
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=74.30 E-value=27 Score=28.03 Aligned_cols=117 Identities=13% Similarity=0.047 Sum_probs=58.3
Q ss_pred ccCCchhHHHHHHHHHHhCCceEeCCCCCCCHHHHHH-----------------HHHHHhhcCCccccceEEEeccCCCC
Q 029874 19 WRMDESNIRDLIINAIKIGYRHIDCAADYRNEAEVGE-----------------ALAEAFSTGLVKREDLFITTKLWNSD 81 (186)
Q Consensus 19 ~~~~~~~~~~~l~~a~~~Gi~~~Dta~~Yg~e~~vG~-----------------~l~~~~~~~~~~R~~~~i~tK~~~~~ 81 (186)
+.++.++..++.++|-+.|+.+|-|.-...+-..+-+ .|+..-. ....++|+|=. .+
T Consensus 51 ~el~~e~~~~L~~~~~~~gi~f~stpfd~~s~d~l~~~~~~~~KIaS~dl~n~~lL~~~A~----tgkPvIlSTG~--st 124 (241)
T PF03102_consen 51 LELSEEQHKELFEYCKELGIDFFSTPFDEESVDFLEELGVPAYKIASGDLTNLPLLEYIAK----TGKPVILSTGM--ST 124 (241)
T ss_dssp HSS-HHHHHHHHHHHHHTT-EEEEEE-SHHHHHHHHHHT-SEEEE-GGGTT-HHHHHHHHT----T-S-EEEE-TT----
T ss_pred hcCCHHHHHHHHHHHHHcCCEEEECCCCHHHHHHHHHcCCCEEEeccccccCHHHHHHHHH----hCCcEEEECCC--CC
Confidence 3567888999999999999999977543322111111 1111100 11234444322 24
Q ss_pred hhHHHHHHHHHHHHhCCCcccEEEEecCCCCCCCCCCCCCCCCCCCCcccccccccHHHHHHHHHHHHHcCCccEEEecC
Q 029874 82 HGHVLEACKDSLKKLQLDYLDLYLVHFPVATKHTGVGTTDSALDADGVLEIDTTISLETTWHAMEDLVSMGLVRSIGIRY 161 (186)
Q Consensus 82 ~~~i~~~~~~sl~~Lg~~~lDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvsn 161 (186)
.+.|.++++...++ ..-++.++|+.....- ++.. --++.|..|++.=- --||.|.
T Consensus 125 l~EI~~Av~~~~~~---~~~~l~llHC~s~YP~------------------~~e~---~NL~~i~~L~~~f~-~~vG~SD 179 (241)
T PF03102_consen 125 LEEIERAVEVLREA---GNEDLVLLHCVSSYPT------------------PPED---VNLRVIPTLKERFG-VPVGYSD 179 (241)
T ss_dssp HHHHHHHHHHHHHH---CT--EEEEEE-SSSS--------------------GGG-----TTHHHHHHHHST-SEEEEEE
T ss_pred HHHHHHHHHHHHhc---CCCCEEEEecCCCCCC------------------ChHH---cChHHHHHHHHhcC-CCEEeCC
Confidence 56666666655333 3578999999865411 1011 12555666665422 5789999
Q ss_pred CCchh
Q 029874 162 VGILN 166 (186)
Q Consensus 162 ~~~~~ 166 (186)
|+...
T Consensus 180 Ht~g~ 184 (241)
T PF03102_consen 180 HTDGI 184 (241)
T ss_dssp -SSSS
T ss_pred CCCCc
Confidence 99764
No 23
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=71.83 E-value=37 Score=29.48 Aligned_cols=126 Identities=17% Similarity=0.170 Sum_probs=62.3
Q ss_pred HHHHHHHHHhCCceEeCCCC---C---------CCHHHHHHHHHHHhhcCCccccceEEEeccCCCChhHHHHHHHHHHH
Q 029874 27 RDLIINAIKIGYRHIDCAAD---Y---------RNEAEVGEALAEAFSTGLVKREDLFITTKLWNSDHGHVLEACKDSLK 94 (186)
Q Consensus 27 ~~~l~~a~~~Gi~~~Dta~~---Y---------g~e~~vG~~l~~~~~~~~~~R~~~~i~tK~~~~~~~~i~~~~~~sl~ 94 (186)
.+.+...-++|+|-+-..-- + .+....-.++....+.| +.+-++=+..-+..-+.+.+.+.++..+
T Consensus 137 ~e~~~~l~~~GvNRiSlGVQsf~~~~lk~lgR~h~~~~~~~a~~~~~~~g-~~~in~DLIyglP~QT~~~~~~~l~~a~- 214 (416)
T COG0635 137 AEKFKALKEAGVNRISLGVQSFNDEVLKALGRIHDEEEAKEAVELARKAG-FTSINIDLIYGLPGQTLESLKEDLEQAL- 214 (416)
T ss_pred HHHHHHHHHcCCCEEEeccccCCHHHHHHhcCCCCHHHHHHHHHHHHHcC-CCcEEEEeecCCCCCCHHHHHHHHHHHH-
Confidence 44555555667776532110 1 13444445555442223 3333333333333335666666666554
Q ss_pred HhCCCcccEEEEec-CCCCCCCCCCCCCCCCCCCCcccccccccHHHHHHHHH-HHHHcCCccEEEecCCCc
Q 029874 95 KLQLDYLDLYLVHF-PVATKHTGVGTTDSALDADGVLEIDTTISLETTWHAME-DLVSMGLVRSIGIRYVGI 164 (186)
Q Consensus 95 ~Lg~~~lDl~~lH~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~l~~~G~ir~iGvsn~~~ 164 (186)
.|+.++|.+|.+-. |....... ..... ..|......+.++... .|.+.|- +.+|+|||..
T Consensus 215 ~l~pdhis~y~L~~~p~t~~~~~------~~~~~---~lP~~d~~~~~~~~~~e~L~~~Gy-~~yeisnfa~ 276 (416)
T COG0635 215 ELGPDHLSLYSLAIEPGTKFAQR------KIKGK---ALPDEDEKADMYELVEELLEKAGY-RQYEISNFAK 276 (416)
T ss_pred hCCCCEEEEeeeecCCCchhhhh------cccCC---CCcChHHHHHHHHHHHHHHHHCCC-cEEeechhcC
Confidence 46799999998754 33322110 00000 0121112234454444 4555666 9999999997
No 24
>PRK00208 thiG thiazole synthase; Reviewed
Probab=68.49 E-value=51 Score=26.66 Aligned_cols=133 Identities=13% Similarity=0.031 Sum_probs=77.4
Q ss_pred CCccccccccCCchhHHHHHHHHHH-hCCceEeCCCCCCC-HHHHHHHHHHHhhcCCccccceEEEec-cCCCChhHHHH
Q 029874 11 MPIIGLGVWRMDESNIRDLIINAIK-IGYRHIDCAADYRN-EAEVGEALAEAFSTGLVKREDLFITTK-LWNSDHGHVLE 87 (186)
Q Consensus 11 v~~lglG~~~~~~~~~~~~l~~a~~-~Gi~~~Dta~~Yg~-e~~vG~~l~~~~~~~~~~R~~~~i~tK-~~~~~~~~i~~ 87 (186)
=|+|-+||..++.. +.+..|++ +|...+-.|-.--+ ...-...+.. ++++.+.+.-. -...+.+...+
T Consensus 10 ~SRl~~Gtgky~s~---~~~~~ai~asg~~ivTvalrR~~~~~~~~~~~~~------i~~~~~~~lpNTaG~~ta~eAv~ 80 (250)
T PRK00208 10 SSRLLLGTGKYPSP---QVMQEAIEASGAEIVTVALRRVNLGQGGDNLLDL------LPPLGVTLLPNTAGCRTAEEAVR 80 (250)
T ss_pred eccceEecCCCCCH---HHHHHHHHHhCCCeEEEEEEeecCCCCcchHHhh------ccccCCEECCCCCCCCCHHHHHH
Confidence 47899999877533 34444543 36665544321110 0000122222 24444444322 23446777777
Q ss_pred HHHHHHHHhCCCcccEEEEecCCCCCCCCCCCCCCCCCCCCcccccccccHHHHHHHHHHHHHcCCccEEEecCCCchhH
Q 029874 88 ACKDSLKKLQLDYLDLYLVHFPVATKHTGVGTTDSALDADGVLEIDTTISLETTWHAMEDLVSMGLVRSIGIRYVGILNP 167 (186)
Q Consensus 88 ~~~~sl~~Lg~~~lDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvsn~~~~~l 167 (186)
..+-..+.++++++-+=.+..+.+.. .+..+++++.++|.++|.+ .+-+|+ +....
T Consensus 81 ~a~lare~~~~~~iKlEVi~d~~~ll----------------------pd~~~tv~aa~~L~~~Gf~-vlpyc~-~d~~~ 136 (250)
T PRK00208 81 TARLAREALGTNWIKLEVIGDDKTLL----------------------PDPIETLKAAEILVKEGFV-VLPYCT-DDPVL 136 (250)
T ss_pred HHHHHHHHhCCCeEEEEEecCCCCCC----------------------cCHHHHHHHHHHHHHCCCE-EEEEeC-CCHHH
Confidence 77778888899988887777665431 2367899999999999874 344555 33344
Q ss_pred hhHHhhccC
Q 029874 168 CEHSIRSSK 176 (186)
Q Consensus 168 ~~~~~~~~~ 176 (186)
++++.+.|.
T Consensus 137 ak~l~~~G~ 145 (250)
T PRK00208 137 AKRLEEAGC 145 (250)
T ss_pred HHHHHHcCC
Confidence 777766643
No 25
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=68.15 E-value=73 Score=26.86 Aligned_cols=39 Identities=10% Similarity=-0.023 Sum_probs=28.5
Q ss_pred HHHHHHHHcCCccEEEecCCCchhHhhHHhhccCCCCCc
Q 029874 143 HAMEDLVSMGLVRSIGIRYVGILNPCEHSIRSSKFSTKF 181 (186)
Q Consensus 143 ~~l~~l~~~G~ir~iGvsn~~~~~l~~~~~~~~~~~~~~ 181 (186)
....++++.=.+.-++.-++...+.++.+++++..|.+.
T Consensus 266 ~~~~~ik~~v~iPVi~~G~i~~~~~a~~~i~~g~~D~V~ 304 (353)
T cd02930 266 WATAKLKRAVDIPVIASNRINTPEVAERLLADGDADMVS 304 (353)
T ss_pred HHHHHHHHhCCCCEEEcCCCCCHHHHHHHHHCCCCChhH
Confidence 344566666567777777777777799999999888553
No 26
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=66.66 E-value=19 Score=23.90 Aligned_cols=65 Identities=11% Similarity=0.131 Sum_probs=44.1
Q ss_pred HHHHHhCCCcccEEEEecCCCCCCCCCCCCCCCCCCCCcccccccccHHHHHHHHHHHHHcC-CccEEEecCCCchhHhh
Q 029874 91 DSLKKLQLDYLDLYLVHFPVATKHTGVGTTDSALDADGVLEIDTTISLETTWHAMEDLVSMG-LVRSIGIRYVGILNPCE 169 (186)
Q Consensus 91 ~sl~~Lg~~~lDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G-~ir~iGvsn~~~~~l~~ 169 (186)
+.++.++....|++++-..-.. .+..+.++.+++.+ .++-|-+++.+......
T Consensus 34 ~~~~~~~~~~~d~iiid~~~~~--------------------------~~~~~~~~~i~~~~~~~~ii~~t~~~~~~~~~ 87 (112)
T PF00072_consen 34 EALELLKKHPPDLIIIDLELPD--------------------------GDGLELLEQIRQINPSIPIIVVTDEDDSDEVQ 87 (112)
T ss_dssp HHHHHHHHSTESEEEEESSSSS--------------------------SBHHHHHHHHHHHTTTSEEEEEESSTSHHHHH
T ss_pred HHHHHhcccCceEEEEEeeecc--------------------------ccccccccccccccccccEEEecCCCCHHHHH
Confidence 3344444456999998863221 12456666777766 89999999888887788
Q ss_pred HHhhccCCCCCc
Q 029874 170 HSIRSSKFSTKF 181 (186)
Q Consensus 170 ~~~~~~~~~~~~ 181 (186)
.+.+.|-.++..
T Consensus 88 ~~~~~g~~~~l~ 99 (112)
T PF00072_consen 88 EALRAGADDYLS 99 (112)
T ss_dssp HHHHTTESEEEE
T ss_pred HHHHCCCCEEEE
Confidence 888888766443
No 27
>PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside []. It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A ....
Probab=66.18 E-value=73 Score=26.73 Aligned_cols=35 Identities=14% Similarity=0.156 Sum_probs=27.6
Q ss_pred HHHHHcCCccEEEecCCCchhHhhHHhhccCCCCC
Q 029874 146 EDLVSMGLVRSIGIRYVGILNPCEHSIRSSKFSTK 180 (186)
Q Consensus 146 ~~l~~~G~ir~iGvsn~~~~~l~~~~~~~~~~~~~ 180 (186)
...++.-.+--|++..++..+.++.+++++..|.+
T Consensus 284 ~~ik~~~~~pvi~~G~i~~~~~ae~~l~~g~~DlV 318 (341)
T PF00724_consen 284 EAIKKAVKIPVIGVGGIRTPEQAEKALEEGKADLV 318 (341)
T ss_dssp HHHHHHHSSEEEEESSTTHHHHHHHHHHTTSTSEE
T ss_pred hhhhhhcCceEEEEeeecchhhhHHHHhcCCceEe
Confidence 44444445678999999999999999999999854
No 28
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=65.84 E-value=43 Score=28.95 Aligned_cols=79 Identities=11% Similarity=0.069 Sum_probs=45.3
Q ss_pred chhHHHHHHHHHHhCCceEeCCCCCCCHHHHHHHHHHHhhcCCccccceEEEeccC--CC-ChhHHHHHHHHHHHHhCCC
Q 029874 23 ESNIRDLIINAIKIGYRHIDCAADYRNEAEVGEALAEAFSTGLVKREDLFITTKLW--NS-DHGHVLEACKDSLKKLQLD 99 (186)
Q Consensus 23 ~~~~~~~l~~a~~~Gi~~~Dta~~Yg~e~~vG~~l~~~~~~~~~~R~~~~i~tK~~--~~-~~~~i~~~~~~sl~~Lg~~ 99 (186)
......+++.|+++|++++|||........+....+ +..+.+..-+. +. +.--....+++-.. .++
T Consensus 78 ~~~~~~i~ka~i~~gv~yvDts~~~~~~~~~~~~a~---------~Agit~v~~~G~dPGi~nv~a~~a~~~~~~--~i~ 146 (389)
T COG1748 78 PFVDLTILKACIKTGVDYVDTSYYEEPPWKLDEEAK---------KAGITAVLGCGFDPGITNVLAAYAAKELFD--EIE 146 (389)
T ss_pred chhhHHHHHHHHHhCCCEEEcccCCchhhhhhHHHH---------HcCeEEEcccCcCcchHHHHHHHHHHHhhc--ccc
Confidence 344568899999999999999976644222222222 22333333332 21 21222222222222 578
Q ss_pred cccEEEEecCCCC
Q 029874 100 YLDLYLVHFPVAT 112 (186)
Q Consensus 100 ~lDl~~lH~p~~~ 112 (186)
++|+|..+-|...
T Consensus 147 si~iy~g~~g~~~ 159 (389)
T COG1748 147 SIDIYVGGLGEHG 159 (389)
T ss_pred EEEEEEecCCCCC
Confidence 9999999988665
No 29
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=64.31 E-value=62 Score=26.18 Aligned_cols=126 Identities=13% Similarity=0.093 Sum_probs=64.7
Q ss_pred ecCCCCcCCccccccccCCchhHHHHHHHHHHhCCceEeCCCCCCCHHHHHHHHHHHhhcCCccccceEEEeccCCCChh
Q 029874 4 TLNNGFKMPIIGLGVWRMDESNIRDLIINAIKIGYRHIDCAADYRNEAEVGEALAEAFSTGLVKREDLFITTKLWNSDHG 83 (186)
Q Consensus 4 ~~~tg~~v~~lglG~~~~~~~~~~~~l~~a~~~Gi~~~Dta~~Yg~e~~vG~~l~~~~~~~~~~R~~~~i~tK~~~~~~~ 83 (186)
.+|.|.+.+...|. .++..++++.-.++|+..++.... .......++.+.....+ ....++ + +.....+
T Consensus 7 TLRDG~Q~~~~~~s-----~~~k~~i~~~L~~~Gv~~IEvG~P-~~~~~~~~~~~~l~~~~--~~~~v~-~--~~r~~~~ 75 (262)
T cd07948 7 TLREGEQFANAFFD-----TEDKIEIAKALDAFGVDYIELTSP-AASPQSRADCEAIAKLG--LKAKIL-T--HIRCHMD 75 (262)
T ss_pred CCCCcCcCCCCCCC-----HHHHHHHHHHHHHcCCCEEEEECC-CCCHHHHHHHHHHHhCC--CCCcEE-E--EecCCHH
Confidence 46778887765554 477788888888999999998642 22222333444432222 112221 1 1233455
Q ss_pred HHHHHHHHHHHHhCCCcccEEEEecCCCCCCCCCCCCCCCCCCCCcccccccccHHHHHHHHHHHHHcCCccEEEe
Q 029874 84 HVLEACKDSLKKLQLDYLDLYLVHFPVATKHTGVGTTDSALDADGVLEIDTTISLETTWHAMEDLVSMGLVRSIGI 159 (186)
Q Consensus 84 ~i~~~~~~sl~~Lg~~~lDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGv 159 (186)
.+.++.+ .|++.+.+++--++.... ...+......+..+.+.++.+++.|.--.+++
T Consensus 76 di~~a~~-----~g~~~i~i~~~~S~~~~~--------------~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~ 132 (262)
T cd07948 76 DARIAVE-----TGVDGVDLVFGTSPFLRE--------------ASHGKSITEIIESAVEVIEFVKSKGIEVRFSS 132 (262)
T ss_pred HHHHHHH-----cCcCEEEEEEecCHHHHH--------------HHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 5555443 377766655421110000 00001112224445555677778887655655
No 30
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=62.76 E-value=61 Score=26.12 Aligned_cols=133 Identities=13% Similarity=0.076 Sum_probs=71.5
Q ss_pred CCccccccccCCchhHHHHHHHHHH-hCCceEeCCCCCCC--HHHHHHHHHHHhhcCCccccceEEEec-cCCCChhHHH
Q 029874 11 MPIIGLGVWRMDESNIRDLIINAIK-IGYRHIDCAADYRN--EAEVGEALAEAFSTGLVKREDLFITTK-LWNSDHGHVL 86 (186)
Q Consensus 11 v~~lglG~~~~~~~~~~~~l~~a~~-~Gi~~~Dta~~Yg~--e~~vG~~l~~~~~~~~~~R~~~~i~tK-~~~~~~~~i~ 86 (186)
=|++-+||..++.. +.+..|++ +|...+-.|----+ ...-++-+-+ .++++++.+.-. -+..+.+...
T Consensus 8 ~SRL~lGTgky~s~---~~m~~ai~aSg~evvTvalRR~~~~~~~~~~~~~~-----~i~~~~~~lLPNTaGc~tA~EAv 79 (247)
T PF05690_consen 8 RSRLILGTGKYPSP---EVMREAIEASGAEVVTVALRRVNLGSKPGGDNILD-----YIDRSGYTLLPNTAGCRTAEEAV 79 (247)
T ss_dssp S-SEEEE-STSSSH---HHHHHHHHHTT-SEEEEECCGSTTTS-TTCHHCCC-----CTTCCTSEEEEE-TT-SSHHHHH
T ss_pred ecceEEecCCCCCH---HHHHHHHHHhCCcEEEEEEecccCCCCCCCccHHH-----HhcccCCEECCcCCCCCCHHHHH
Confidence 47888999877543 45566653 47776655422110 1000111111 145566655433 3455778888
Q ss_pred HHHHHHHHHhCCCcccEEEEecCCCCCCCCCCCCCCCCCCCCcccccccccHHHHHHHHHHHHHcCCccEEEecCCCchh
Q 029874 87 EACKDSLKKLQLDYLDLYLVHFPVATKHTGVGTTDSALDADGVLEIDTTISLETTWHAMEDLVSMGLVRSIGIRYVGILN 166 (186)
Q Consensus 87 ~~~~~sl~~Lg~~~lDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvsn~~~~~ 166 (186)
+..+-..+.+++++|-+=.+..+.+- ..+..+++++-+.|+++|-+-.= -++ ...-
T Consensus 80 ~~A~laRe~~~t~wIKLEVi~D~~~L----------------------~PD~~etl~Aae~Lv~eGF~VlP-Y~~-~D~v 135 (247)
T PF05690_consen 80 RTARLAREAFGTNWIKLEVIGDDKTL----------------------LPDPIETLKAAEILVKEGFVVLP-YCT-DDPV 135 (247)
T ss_dssp HHHHHHHHTTS-SEEEE--BS-TTT------------------------B-HHHHHHHHHHHHHTT-EEEE-EE--S-HH
T ss_pred HHHHHHHHHcCCCeEEEEEeCCCCCc----------------------CCChhHHHHHHHHHHHCCCEEee-cCC-CCHH
Confidence 88888889999998887766654332 12367899999999999875322 222 3444
Q ss_pred HhhHHhhcc
Q 029874 167 PCEHSIRSS 175 (186)
Q Consensus 167 l~~~~~~~~ 175 (186)
+++++.+.|
T Consensus 136 ~akrL~d~G 144 (247)
T PF05690_consen 136 LAKRLEDAG 144 (247)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHCC
Confidence 677777665
No 31
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=62.32 E-value=59 Score=26.61 Aligned_cols=50 Identities=16% Similarity=0.149 Sum_probs=31.9
Q ss_pred ecCCCCcCCccccccccCCchhHHHHHHHHHHh-CCceEeCCCC-CCCHHHHHHHHHHH
Q 029874 4 TLNNGFKMPIIGLGVWRMDESNIRDLIINAIKI-GYRHIDCAAD-YRNEAEVGEALAEA 60 (186)
Q Consensus 4 ~~~tg~~v~~lglG~~~~~~~~~~~~l~~a~~~-Gi~~~Dta~~-Yg~e~~vG~~l~~~ 60 (186)
.+|.|.+-+.+.|.+ ++..++++.-++. |++.|+.... .+.+.. +++++.
T Consensus 4 TlRDG~Q~~~~~~s~-----e~K~~i~~~L~~~~Gv~~IEvg~~~~s~~e~--~av~~~ 55 (280)
T cd07945 4 TLRDGEQTSGVSFSP-----SEKLNIAKILLQELKVDRIEVASARVSEGEF--EAVQKI 55 (280)
T ss_pred CCCCcCcCCCCccCH-----HHHHHHHHHHHHHhCCCEEEecCCCCCHHHH--HHHHHH
Confidence 467788877766644 5566666665444 9999998755 433332 555554
No 32
>PRK13796 GTPase YqeH; Provisional
Probab=60.07 E-value=1.1e+02 Score=26.04 Aligned_cols=121 Identities=15% Similarity=0.117 Sum_probs=74.3
Q ss_pred CchhHHHHHHHHHHhC---CceEeCCCCCCC-HHHHHHHHHHHhhcCCccccceEEEeccCCC----ChhHHHHHHHHHH
Q 029874 22 DESNIRDLIINAIKIG---YRHIDCAADYRN-EAEVGEALAEAFSTGLVKREDLFITTKLWNS----DHGHVLEACKDSL 93 (186)
Q Consensus 22 ~~~~~~~~l~~a~~~G---i~~~Dta~~Yg~-e~~vG~~l~~~~~~~~~~R~~~~i~tK~~~~----~~~~i~~~~~~sl 93 (186)
+.++..+.++..-+.- +-.+|....-++ ...+.+.. + .+.-+++.+|.--. ..+.+.+.++...
T Consensus 55 ~~~~~~~~l~~i~~~~~lIv~VVD~~D~~~s~~~~L~~~~------~--~kpviLViNK~DLl~~~~~~~~i~~~l~~~~ 126 (365)
T PRK13796 55 TDDDFLKLLNGIGDSDALVVNVVDIFDFNGSWIPGLHRFV------G--NNPVLLVGNKADLLPKSVKKNKVKNWLRQEA 126 (365)
T ss_pred CHHHHHHHHHhhcccCcEEEEEEECccCCCchhHHHHHHh------C--CCCEEEEEEchhhCCCccCHHHHHHHHHHHH
Confidence 3444455555544444 345676554443 22222221 1 34457789997322 2445666666667
Q ss_pred HHhCCCcccEEEEecCCCCCCCCCCCCCCCCCCCCcccccccccHHHHHHHHHHHHHcCCccEEEecCCCchhHhhHHhh
Q 029874 94 KKLQLDYLDLYLVHFPVATKHTGVGTTDSALDADGVLEIDTTISLETTWHAMEDLVSMGLVRSIGIRYVGILNPCEHSIR 173 (186)
Q Consensus 94 ~~Lg~~~lDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvsn~~~~~l~~~~~~ 173 (186)
+.+|....+++++..-.. ..+.+..+.+.++.+.+.+--+|.+|.+-..++-+++.
T Consensus 127 k~~g~~~~~v~~vSAk~g------------------------~gI~eL~~~I~~~~~~~~v~vvG~~NvGKSTLiN~L~~ 182 (365)
T PRK13796 127 KELGLRPVDVVLISAQKG------------------------HGIDELLEAIEKYREGRDVYVVGVTNVGKSTLINRIIK 182 (365)
T ss_pred HhcCCCcCcEEEEECCCC------------------------CCHHHHHHHHHHhcCCCeEEEEcCCCCcHHHHHHHHHh
Confidence 777765557777664321 12667888888877778899999999999998888864
Q ss_pred c
Q 029874 174 S 174 (186)
Q Consensus 174 ~ 174 (186)
.
T Consensus 183 ~ 183 (365)
T PRK13796 183 E 183 (365)
T ss_pred h
Confidence 3
No 33
>COG1801 Uncharacterized conserved protein [Function unknown]
Probab=59.89 E-value=94 Score=25.29 Aligned_cols=93 Identities=16% Similarity=0.190 Sum_probs=62.4
Q ss_pred CccccccccCC--------chhHHHHHHHHHHhCCceEeC-CCCCC--CHHHHHHHHHHHhhcCCccccceEEEeccCCC
Q 029874 12 PIIGLGVWRMD--------ESNIRDLIINAIKIGYRHIDC-AADYR--NEAEVGEALAEAFSTGLVKREDLFITTKLWNS 80 (186)
Q Consensus 12 ~~lglG~~~~~--------~~~~~~~l~~a~~~Gi~~~Dt-a~~Yg--~e~~vG~~l~~~~~~~~~~R~~~~i~tK~~~~ 80 (186)
..||++.|..+ +....+-.........|.++. ++.|. ++..+-++.++ ..+++..+.|++..
T Consensus 3 i~IG~sGW~~~~w~~~~yp~~~~~~~~L~~y~~~f~~VEiN~TFYa~p~~~t~~~W~~~-------~p~~FrFsvK~~~~ 75 (263)
T COG1801 3 IYIGTSGWSYPDWEGLFYPEGLKKKEFLAYYASHFNTVEINSTFYAPPSPETVLRWAEE-------TPDDFRFSVKAPRA 75 (263)
T ss_pred eEEeecCCCcccccccccCcccchhhHHHHHhccCCEEEECCcccCCCCHHHHHHHHHh-------CCCCeEEEEEeccc
Confidence 35677777653 223333334445556777765 56776 78888889886 67899999998643
Q ss_pred --------C-hhHHHHHHHHHHHHhCCCcccEEEEecCCCC
Q 029874 81 --------D-HGHVLEACKDSLKKLQLDYLDLYLVHFPVAT 112 (186)
Q Consensus 81 --------~-~~~i~~~~~~sl~~Lg~~~lDl~~lH~p~~~ 112 (186)
+ -..+.+.+.+.++.|| +.+..+++-.|-..
T Consensus 76 iTH~~~l~~~~~~~~~~~~~~~~~L~-~klg~il~Q~Ppsf 115 (263)
T COG1801 76 ITHQRRLKECDFELWEFFLEPLAPLG-ERLGPILFQLPPSF 115 (263)
T ss_pred ccchhhhccchHHHHHHHHHHHHhhh-cccceEEEecCCcc
Confidence 1 1345555666667777 58999999988554
No 34
>COG0274 DeoC Deoxyribose-phosphate aldolase [Nucleotide transport and metabolism]
Probab=57.79 E-value=96 Score=24.76 Aligned_cols=81 Identities=10% Similarity=0.055 Sum_probs=56.6
Q ss_pred CCccccccccCCchhHHHHHHHHHHhCCceEeCCCCCC---CHHHHHHHHHHHhhcCCccccceEEEecc--CCCChhHH
Q 029874 11 MPIIGLGVWRMDESNIRDLIINAIKIGYRHIDCAADYR---NEAEVGEALAEAFSTGLVKREDLFITTKL--WNSDHGHV 85 (186)
Q Consensus 11 v~~lglG~~~~~~~~~~~~l~~a~~~Gi~~~Dta~~Yg---~e~~vG~~l~~~~~~~~~~R~~~~i~tK~--~~~~~~~i 85 (186)
+-++.+-|..+.+++..++...+.++|.-|+=||..+. .-..--+.+++.+ ... +-.|- ...+.++.
T Consensus 127 ~lKVIlEt~~Lt~ee~~~A~~i~~~aGAdFVKTSTGf~~~gAT~edv~lM~~~v------g~~--vgvKaSGGIrt~eda 198 (228)
T COG0274 127 VLKVILETGLLTDEEKRKACEIAIEAGADFVKTSTGFSAGGATVEDVKLMKETV------GGR--VGVKASGGIRTAEDA 198 (228)
T ss_pred eEEEEEeccccCHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHh------ccC--ceeeccCCcCCHHHH
Confidence 44566777777888889999999999999999999774 2222223333321 112 33343 34488999
Q ss_pred HHHHHHHHHHhCCC
Q 029874 86 LEACKDSLKKLQLD 99 (186)
Q Consensus 86 ~~~~~~sl~~Lg~~ 99 (186)
..-++....|+|++
T Consensus 199 ~~~i~aga~RiGtS 212 (228)
T COG0274 199 KAMIEAGATRIGTS 212 (228)
T ss_pred HHHHHHhHHHhccc
Confidence 99999999999976
No 35
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=57.62 E-value=62 Score=26.11 Aligned_cols=77 Identities=16% Similarity=0.257 Sum_probs=48.7
Q ss_pred chhHHHHHHHHHHhCCceEeCCCCCC--CHHHHHHHHHHHhhcCCccccceEEEeccCCC--------ChhHHHHHHHHH
Q 029874 23 ESNIRDLIINAIKIGYRHIDCAADYR--NEAEVGEALAEAFSTGLVKREDLFITTKLWNS--------DHGHVLEACKDS 92 (186)
Q Consensus 23 ~~~~~~~l~~a~~~Gi~~~Dta~~Yg--~e~~vG~~l~~~~~~~~~~R~~~~i~tK~~~~--------~~~~i~~~~~~s 92 (186)
+....+.+..|-+.|++.++.|...- +...--++++.. ....+.+-+-+... ++....+.++.-
T Consensus 83 q~~~~~yl~~~k~lGf~~IEiSdGti~l~~~~r~~~I~~~------~~~Gf~v~~EvG~K~~~~~~~~~~~~~i~~~~~d 156 (244)
T PF02679_consen 83 QGKFDEYLEECKELGFDAIEISDGTIDLPEEERLRLIRKA------KEEGFKVLSEVGKKDPESDFSLDPEELIEQAKRD 156 (244)
T ss_dssp TT-HHHHHHHHHHCT-SEEEE--SSS---HHHHHHHHHHH------CCTTSEEEEEES-SSHHHHTT--CCHHHHHHHHH
T ss_pred cChHHHHHHHHHHcCCCEEEecCCceeCCHHHHHHHHHHH------HHCCCEEeecccCCCchhcccCCHHHHHHHHHHH
Confidence 45567788888889999999988875 577777888875 55557777777544 356666777777
Q ss_pred HHHhCCCcccEEEEecC
Q 029874 93 LKKLQLDYLDLYLVHFP 109 (186)
Q Consensus 93 l~~Lg~~~lDl~~lH~p 109 (186)
|++ | .|.+++-.-
T Consensus 157 LeA-G---A~~ViiEar 169 (244)
T PF02679_consen 157 LEA-G---ADKVIIEAR 169 (244)
T ss_dssp HHH-T---ECEEEE--T
T ss_pred HHC-C---CCEEEEeee
Confidence 666 4 566676643
No 36
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=56.93 E-value=62 Score=25.55 Aligned_cols=80 Identities=6% Similarity=-0.017 Sum_probs=52.4
Q ss_pred ccccccccCCchhHHHHHHHHHHhCCceEeCCCCCC----CHHHHHHHHHHHhhcCCccccceEEEeccCCCChhHHHHH
Q 029874 13 IIGLGVWRMDESNIRDLIINAIKIGYRHIDCAADYR----NEAEVGEALAEAFSTGLVKREDLFITTKLWNSDHGHVLEA 88 (186)
Q Consensus 13 ~lglG~~~~~~~~~~~~l~~a~~~Gi~~~Dta~~Yg----~e~~vG~~l~~~~~~~~~~R~~~~i~tK~~~~~~~~i~~~ 88 (186)
++.+=+..++.++..++.+.+.++|..|+=|++.++ +...+-...+.. +.++-|-.-....+.++..+-
T Consensus 125 KvIlEt~~L~~e~i~~a~~~~~~agadfIKTsTG~~~~gat~~~v~~m~~~~-------~~~~~IKasGGIrt~~~a~~~ 197 (221)
T PRK00507 125 KVIIETCLLTDEEKVKACEIAKEAGADFVKTSTGFSTGGATVEDVKLMRETV-------GPRVGVKASGGIRTLEDALAM 197 (221)
T ss_pred EEEeecCcCCHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHh-------CCCceEEeeCCcCCHHHHHHH
Confidence 344445556778889999999999999999999984 344443333331 222222222234478888888
Q ss_pred HHHHHHHhCCC
Q 029874 89 CKDSLKKLQLD 99 (186)
Q Consensus 89 ~~~sl~~Lg~~ 99 (186)
++..-.++|++
T Consensus 198 i~aGA~riGtS 208 (221)
T PRK00507 198 IEAGATRLGTS 208 (221)
T ss_pred HHcCcceEccC
Confidence 88777888775
No 37
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=56.16 E-value=91 Score=23.97 Aligned_cols=76 Identities=14% Similarity=0.073 Sum_probs=47.6
Q ss_pred ccccccCCchhHHHHHHHHHHhCCceEeCCCCCC---CHHHHHHHHHHHhhcCCccccceEEEecc--CCCChhHHHHHH
Q 029874 15 GLGVWRMDESNIRDLIINAIKIGYRHIDCAADYR---NEAEVGEALAEAFSTGLVKREDLFITTKL--WNSDHGHVLEAC 89 (186)
Q Consensus 15 glG~~~~~~~~~~~~l~~a~~~Gi~~~Dta~~Yg---~e~~vG~~l~~~~~~~~~~R~~~~i~tK~--~~~~~~~i~~~~ 89 (186)
.+.+..++.++...+.+.|.++|..++=|+..|. .-..-.+.+++. -+.. +..|. ...+.++..+-+
T Consensus 122 I~e~~~l~~~~i~~a~ria~e~GaD~IKTsTG~~~~~at~~~v~~~~~~------~~~~--v~ik~aGGikt~~~~l~~~ 193 (203)
T cd00959 122 ILETGLLTDEEIIKACEIAIEAGADFIKTSTGFGPGGATVEDVKLMKEA------VGGR--VGVKAAGGIRTLEDALAMI 193 (203)
T ss_pred EEecCCCCHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHH------hCCC--ceEEEeCCCCCHHHHHHHH
Confidence 3444445667889999999999999999998885 111222333332 1122 23333 333677777777
Q ss_pred HHHHHHhCC
Q 029874 90 KDSLKKLQL 98 (186)
Q Consensus 90 ~~sl~~Lg~ 98 (186)
+....++|+
T Consensus 194 ~~g~~riG~ 202 (203)
T cd00959 194 EAGATRIGT 202 (203)
T ss_pred HhChhhccC
Confidence 777777775
No 38
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=56.12 E-value=89 Score=23.87 Aligned_cols=25 Identities=8% Similarity=0.204 Sum_probs=15.7
Q ss_pred HHHHHHHHHcCCccEEEecCCCchh
Q 029874 142 WHAMEDLVSMGLVRSIGIRYVGILN 166 (186)
Q Consensus 142 ~~~l~~l~~~G~ir~iGvsn~~~~~ 166 (186)
.+.+.+......++.+|+++++..+
T Consensus 88 ~~~l~~~~~~~~i~~i~~~~~~~~~ 112 (203)
T cd00405 88 CAQLRARLGLPVIKAIRVKDEEDLE 112 (203)
T ss_pred HHHHHhhcCCcEEEEEecCChhhHH
Confidence 3334333345678999999876654
No 39
>PRK05414 urocanate hydratase; Provisional
Probab=54.44 E-value=46 Score=29.85 Aligned_cols=115 Identities=18% Similarity=0.117 Sum_probs=73.0
Q ss_pred HHHHHHHHhCCceEe--CCCCC---C-------CHHHHHHHHHHHhhcCCccccceEEEeccCCCC---hhHH-------
Q 029874 28 DLIINAIKIGYRHID--CAADY---R-------NEAEVGEALAEAFSTGLVKREDLFITTKLWNSD---HGHV------- 85 (186)
Q Consensus 28 ~~l~~a~~~Gi~~~D--ta~~Y---g-------~e~~vG~~l~~~~~~~~~~R~~~~i~tK~~~~~---~~~i------- 85 (186)
+-+...-+.|+..+= ||..| | ...-+.++-++.+. | --+..+++++-+..-+ |...
T Consensus 116 e~f~~l~~~Gl~mYGQMTAGsw~YIG~QGIvqGTyeT~~~a~rk~f~-g-~L~G~~~lTaGLGGMgGAQPlA~~mag~v~ 193 (556)
T PRK05414 116 EHFNELEAKGLTMYGQMTAGSWIYIGSQGIVQGTYETFAEAARQHFG-G-DLAGRLVLTAGLGGMGGAQPLAATMAGAVC 193 (556)
T ss_pred HHHHHHHHcccccccCccccceeEEcCceeeecHHHHHHHHHHHhcC-C-CCceeEEEEecCCccccccHHHHHhcCceE
Confidence 455666667877553 44433 2 34445555555543 3 2456788887774331 1100
Q ss_pred ---HHHHHHHHHHhCCCcccEEEEecCCCCCCCCCCCCCCCCCCCCcccccccccHHHHHHHHHHHHHcCCccEEEecCC
Q 029874 86 ---LEACKDSLKKLQLDYLDLYLVHFPVATKHTGVGTTDSALDADGVLEIDTTISLETTWHAMEDLVSMGLVRSIGIRYV 162 (186)
Q Consensus 86 ---~~~~~~sl~~Lg~~~lDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvsn~ 162 (186)
.=.-...-+|+.+.|+|.+. .++.++++-.++.+++|+..+||+-.
T Consensus 194 i~vEvd~~ri~kR~~~gyld~~~------------------------------~~Ldeal~~~~~a~~~~~~~SIg~~G- 242 (556)
T PRK05414 194 LAVEVDESRIDKRLRTGYLDEKA------------------------------DDLDEALALAEEAKAAGEPLSIGLLG- 242 (556)
T ss_pred EEEEECHHHHHHHHhCCcceeEc------------------------------CCHHHHHHHHHHHHHcCCceEEEEec-
Confidence 00112334688888988763 12678999999999999999999987
Q ss_pred CchhHhhHHhhcc
Q 029874 163 GILNPCEHSIRSS 175 (186)
Q Consensus 163 ~~~~l~~~~~~~~ 175 (186)
|..++.+.+++.+
T Consensus 243 Naadv~~~l~~~~ 255 (556)
T PRK05414 243 NAADVLPELVRRG 255 (556)
T ss_pred cHHHHHHHHHHcC
Confidence 8888888887764
No 40
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=54.36 E-value=44 Score=29.85 Aligned_cols=115 Identities=16% Similarity=0.084 Sum_probs=73.2
Q ss_pred HHHHHHHHhCCceEe--CCCCC---C-------CHHHHHHHHHHHhhcCCccccceEEEeccCCCC---hhHHH------
Q 029874 28 DLIINAIKIGYRHID--CAADY---R-------NEAEVGEALAEAFSTGLVKREDLFITTKLWNSD---HGHVL------ 86 (186)
Q Consensus 28 ~~l~~a~~~Gi~~~D--ta~~Y---g-------~e~~vG~~l~~~~~~~~~~R~~~~i~tK~~~~~---~~~i~------ 86 (186)
+-....-+.|+..+= ||..| | ...-+..+-++.+... -+..+++++-+..-+ |....
T Consensus 107 e~f~~l~~~Gl~mYGQMTAGsw~YIG~QGIvqGTyeT~~~aark~f~~~--L~G~~~lTaGLGGMgGAQPlA~~mag~v~ 184 (545)
T TIGR01228 107 EHFHELEAKGLMMYGQMTAGSWIYIGTQGILQGTYETFAELARQHFGGS--LKGKWVLTAGLGGMGGAQPLAVTMNGGVS 184 (545)
T ss_pred HHHHHHHHcccccccCccccceEEEcCcceeecHHHHHHHHHHHhcCCC--CceeEEEEeCCCccccccHHHHHHcCceE
Confidence 455666667877553 44433 2 3444555555554322 466788887774331 11100
Q ss_pred ----HHHHHHHHHhCCCcccEEEEecCCCCCCCCCCCCCCCCCCCCcccccccccHHHHHHHHHHHHHcCCccEEEecCC
Q 029874 87 ----EACKDSLKKLQLDYLDLYLVHFPVATKHTGVGTTDSALDADGVLEIDTTISLETTWHAMEDLVSMGLVRSIGIRYV 162 (186)
Q Consensus 87 ----~~~~~sl~~Lg~~~lDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvsn~ 162 (186)
=.-...-+|+.+.|+|.+. .++.++++-.++.+++|+..+||+-.
T Consensus 185 i~vEvd~~ri~kR~~~gyld~~~------------------------------~~ldeal~~~~~a~~~~~~~SIg~~G- 233 (545)
T TIGR01228 185 IAVEVDESRIDKRLETKYCDEQT------------------------------DSLDEALARAEEAKAEGKPISIGLLG- 233 (545)
T ss_pred EEEEECHHHHHHHHhcCcceeEc------------------------------CCHHHHHHHHHHHHHcCCceEEEeec-
Confidence 0112334688888888763 12678999999999999999999987
Q ss_pred CchhHhhHHhhcc
Q 029874 163 GILNPCEHSIRSS 175 (186)
Q Consensus 163 ~~~~l~~~~~~~~ 175 (186)
|..++.+.+++.+
T Consensus 234 Naadv~~~l~~r~ 246 (545)
T TIGR01228 234 NAAEVLPELLKRG 246 (545)
T ss_pred cHHHHHHHHHHcC
Confidence 8888888888764
No 41
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=50.56 E-value=25 Score=24.53 Aligned_cols=27 Identities=26% Similarity=0.479 Sum_probs=23.7
Q ss_pred CchhHHHHHHHHHHhCCceEeCCCCCC
Q 029874 22 DESNIRDLIINAIKIGYRHIDCAADYR 48 (186)
Q Consensus 22 ~~~~~~~~l~~a~~~Gi~~~Dta~~Yg 48 (186)
+...+.+....+++.|++.||.+..|.
T Consensus 75 ~~~~~~~~~~~~~~~g~~ViD~s~~~R 101 (121)
T PF01118_consen 75 PHGASKELAPKLLKAGIKVIDLSGDFR 101 (121)
T ss_dssp CHHHHHHHHHHHHHTTSEEEESSSTTT
T ss_pred chhHHHHHHHHHhhCCcEEEeCCHHHh
Confidence 566778888999999999999999984
No 42
>COG4669 EscJ Type III secretory pathway, lipoprotein EscJ [Intracellular trafficking and secretion]
Probab=48.37 E-value=1.4e+02 Score=24.00 Aligned_cols=127 Identities=13% Similarity=0.186 Sum_probs=76.9
Q ss_pred cCCchhHHHHHHHHHHhCCceEeCCCCCC------CHHHHHHHHHHHhhcCCccccceEEEeccCCC-----C-------
Q 029874 20 RMDESNIRDLIINAIKIGYRHIDCAADYR------NEAEVGEALAEAFSTGLVKREDLFITTKLWNS-----D------- 81 (186)
Q Consensus 20 ~~~~~~~~~~l~~a~~~Gi~~~Dta~~Yg------~e~~vG~~l~~~~~~~~~~R~~~~i~tK~~~~-----~------- 81 (186)
++++++|.+++-.-..+||+.-=.++.-| .+..+.+++.-+...| .||+.+.-...+|+. +
T Consensus 27 gL~e~eANemlAlL~~~gI~A~K~~~~~g~~~l~Ve~~~fa~Av~iL~~~G-lPr~~f~~l~d~Fp~dgLVsSP~eEkaR 105 (246)
T COG4669 27 GLSEKEANEMLALLMSHGINAEKKADKDGGTSLLVEESDFAEAVEILNQNG-LPRKKFTTLGDIFPKDGLVSSPTEEKAR 105 (246)
T ss_pred CCCHhHHHHHHHHHHHcCCcceeeccCCCceEEEEcHHHHHHHHHHHHhcC-CCCCCCCcHHHhCCcccccCCcHHHHHH
Confidence 56899999999999999999776666555 4888998877665557 888877666666654 2
Q ss_pred -hhHHHHHHHHHHHHhCCCcccE-EEEecCCCCCCCCCCCCCCCCCCCCcccccccccHHHHHHHHHHHHHc
Q 029874 82 -HGHVLEACKDSLKKLQLDYLDL-YLVHFPVATKHTGVGTTDSALDADGVLEIDTTISLETTWHAMEDLVSM 151 (186)
Q Consensus 82 -~~~i~~~~~~sl~~Lg~~~lDl-~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 151 (186)
...+.++++++|+.+. .-++. +.+-.|.... .+....|..-.......++.++.-..-....|++.
T Consensus 106 ~~~~~eQ~le~tLs~mD-GVi~ArV~I~lp~~~~---~g~~~~P~saSVfIky~~~~nl~~~v~~IK~LV~n 173 (246)
T COG4669 106 LNYAKEQQLEQTLSKMD-GVISARVHISLPEDDD---EGKNALPSSASVFIKYSPDVNLSIYVSQIKRLVAN 173 (246)
T ss_pred HHHHHHHHHHHHHHhcC-ceEEEEEEEEcCCCCc---cCCCCCCceeEEEEEecCCCChhHhHHHHHHHHHh
Confidence 2346778888888884 12222 2333342211 13333343333333334444455555556666653
No 43
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=48.34 E-value=1.7e+02 Score=24.67 Aligned_cols=40 Identities=3% Similarity=-0.149 Sum_probs=28.7
Q ss_pred HHHHHHHHHcCCccEEEecCCCchhHhhHHhhccCCCCCc
Q 029874 142 WHAMEDLVSMGLVRSIGIRYVGILNPCEHSIRSSKFSTKF 181 (186)
Q Consensus 142 ~~~l~~l~~~G~ir~iGvsn~~~~~l~~~~~~~~~~~~~~ 181 (186)
|+.....++.=.+--|++.++...+.++.+++.+..|.++
T Consensus 274 ~~~~~~ik~~~~ipvi~~G~i~~~~~~~~~l~~~~~D~V~ 313 (343)
T cd04734 274 LPLAARIKQAVDLPVFHAGRIRDPAEAEQALAAGHADMVG 313 (343)
T ss_pred HHHHHHHHHHcCCCEEeeCCCCCHHHHHHHHHcCCCCeee
Confidence 4555555655467788888877666699999999888554
No 44
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=46.74 E-value=1.7e+02 Score=24.34 Aligned_cols=133 Identities=9% Similarity=0.061 Sum_probs=77.2
Q ss_pred CchhHHHHHHHHHHhCCceEeCC----------CCCC-----CHHHHHHHHHHHhhcCCccccceEEEeccCCC--ChhH
Q 029874 22 DESNIRDLIINAIKIGYRHIDCA----------ADYR-----NEAEVGEALAEAFSTGLVKREDLFITTKLWNS--DHGH 84 (186)
Q Consensus 22 ~~~~~~~~l~~a~~~Gi~~~Dta----------~~Yg-----~e~~vG~~l~~~~~~~~~~R~~~~i~tK~~~~--~~~~ 84 (186)
+.++..++...+.+.|+..||-- ..+| .-..+.+.++...+. ...++-|+.|+-.. +.+.
T Consensus 73 ~p~~~~~aA~~~~~~g~d~IdiN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~avr~~---~~~~~pVsvKiR~g~~~~~~ 149 (312)
T PRK10550 73 YPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREA---VPAHLPVTVKVRLGWDSGER 149 (312)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCCCchHHhcCCCchHhhcCHHHHHHHHHHHHHh---cCCCcceEEEEECCCCCchH
Confidence 55666677778888999999821 1222 234455555543111 11246788886322 2222
Q ss_pred HHHHHHHHHHHhCCCcccEEEEecCCCCCCCCCCCCCCCCCCCCcccccccccHHHHHHHHHHHHHcCCccEEEecCCCc
Q 029874 85 VLEACKDSLKKLQLDYLDLYLVHFPVATKHTGVGTTDSALDADGVLEIDTTISLETTWHAMEDLVSMGLVRSIGIRYVGI 164 (186)
Q Consensus 85 i~~~~~~sl~~Lg~~~lDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvsn~~~ 164 (186)
...+-+.++..| +|.+.+|.-... + ...+ +. --|+...++++.-.|.-||......
T Consensus 150 -~~~~a~~l~~~G---vd~i~Vh~Rt~~-~----------~y~g----~~-----~~~~~i~~ik~~~~iPVi~nGdI~t 205 (312)
T PRK10550 150 -KFEIADAVQQAG---ATELVVHGRTKE-D----------GYRA----EH-----INWQAIGEIRQRLTIPVIANGEIWD 205 (312)
T ss_pred -HHHHHHHHHhcC---CCEEEECCCCCc-c----------CCCC----Cc-----ccHHHHHHHHhhcCCcEEEeCCcCC
Confidence 235555567766 567777842211 0 0000 00 0267777888877788999888877
Q ss_pred hhHhhHHhhccCCCCCc
Q 029874 165 LNPCEHSIRSSKFSTKF 181 (186)
Q Consensus 165 ~~l~~~~~~~~~~~~~~ 181 (186)
.+-++.+++.+..|.++
T Consensus 206 ~~da~~~l~~~g~DgVm 222 (312)
T PRK10550 206 WQSAQQCMAITGCDAVM 222 (312)
T ss_pred HHHHHHHHhccCCCEEE
Confidence 77688888777777544
No 45
>PF05990 DUF900: Alpha/beta hydrolase of unknown function (DUF900); InterPro: IPR010297 This domain is associated with proteins of unknown function, which are hydrolase-like.
Probab=46.52 E-value=1.4e+02 Score=23.47 Aligned_cols=99 Identities=15% Similarity=0.157 Sum_probs=62.6
Q ss_pred HHHHHHHHHHhhcCCccccceEEEeccCCCChhHHHHHHHHHHHHhCCCcccEEEEecCCCCCCCCCCCCCCCCCCCCcc
Q 029874 51 AEVGEALAEAFSTGLVKREDLFITTKLWNSDHGHVLEACKDSLKKLQLDYLDLYLVHFPVATKHTGVGTTDSALDADGVL 130 (186)
Q Consensus 51 ~~vG~~l~~~~~~~~~~R~~~~i~tK~~~~~~~~i~~~~~~sl~~Lg~~~lDl~~lH~p~~~~~~~~~~~~~~~~~~~~~ 130 (186)
..+.+.++. . +.++++|-.+.++.+.+.......+....++.+. -++.+.||....... ...+...
T Consensus 6 ~~~~~~l~~----~--~~~~vlvfVHGyn~~f~~a~~r~aql~~~~~~~~-~~i~FsWPS~g~~~~------Y~~d~~~- 71 (233)
T PF05990_consen 6 AQLNQRLAK----S--PDKEVLVFVHGYNNSFEDALRRAAQLAHDLGFPG-VVILFSWPSDGSLLG------YFYDRES- 71 (233)
T ss_pred HHHHHHHhh----C--CCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCc-eEEEEEcCCCCChhh------hhhhhhh-
Confidence 344455554 2 7889999999999988887777778888888665 788889997653210 0001000
Q ss_pred cccccccHHHHHHHHHHHHHcCCccEEEecCCCchh
Q 029874 131 EIDTTISLETTWHAMEDLVSMGLVRSIGIRYVGILN 166 (186)
Q Consensus 131 ~~~~~~~~~~~~~~l~~l~~~G~ir~iGvsn~~~~~ 166 (186)
...+-....+.|+.|.+....+.|=+-.||+-.
T Consensus 72 ---a~~s~~~l~~~L~~L~~~~~~~~I~ilaHSMG~ 104 (233)
T PF05990_consen 72 ---ARFSGPALARFLRDLARAPGIKRIHILAHSMGN 104 (233)
T ss_pred ---HHHHHHHHHHHHHHHHhccCCceEEEEEeCchH
Confidence 001223344566677777567777777777653
No 46
>PRK15108 biotin synthase; Provisional
Probab=46.51 E-value=1.8e+02 Score=24.53 Aligned_cols=128 Identities=15% Similarity=0.153 Sum_probs=66.7
Q ss_pred CCchhHHHHHHHHHHhCCceEeCCCCC-C----CHHHHHHHHHHHhhcCCccccceEEEeccCCCChhHHHHHHHHHHHH
Q 029874 21 MDESNIRDLIINAIKIGYRHIDCAADY-R----NEAEVGEALAEAFSTGLVKREDLFITTKLWNSDHGHVLEACKDSLKK 95 (186)
Q Consensus 21 ~~~~~~~~~l~~a~~~Gi~~~Dta~~Y-g----~e~~vG~~l~~~~~~~~~~R~~~~i~tK~~~~~~~~i~~~~~~sl~~ 95 (186)
++.+++.+..+.+.+.|++.|-..... + .-..+.+.++.. ++..+.+..-....+ +..-+-|+.
T Consensus 76 ls~eEI~~~a~~~~~~G~~~i~i~~~g~~p~~~~~e~i~~~i~~i------k~~~i~v~~s~G~ls-----~e~l~~Lke 144 (345)
T PRK15108 76 MEVEQVLESARKAKAAGSTRFCMGAAWKNPHERDMPYLEQMVQGV------KAMGLETCMTLGTLS-----ESQAQRLAN 144 (345)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEecCCCCCcchHHHHHHHHHHH------HhCCCEEEEeCCcCC-----HHHHHHHHH
Confidence 456777777777788999988653221 1 235666666654 222233322233223 333344667
Q ss_pred hCCCcccEEEEecCCCCCCCCCCCCCCCCCCCCcccccccccHHHHHHHHHHHHHcCCccE----EEecCCCchhHhhHH
Q 029874 96 LQLDYLDLYLVHFPVATKHTGVGTTDSALDADGVLEIDTTISLETTWHAMEDLVSMGLVRS----IGIRYVGILNPCEHS 171 (186)
Q Consensus 96 Lg~~~lDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~----iGvsn~~~~~l~~~~ 171 (186)
.|++++. |+.+.. + +.........+..+.++.++.+++.|.--. +|+. -+.++.++.+
T Consensus 145 AGld~~n----~~leT~-p------------~~f~~I~~~~~~~~rl~~i~~a~~~G~~v~sg~i~Glg-Et~ed~v~~~ 206 (345)
T PRK15108 145 AGLDYYN----HNLDTS-P------------EFYGNIITTRTYQERLDTLEKVRDAGIKVCSGGIVGLG-ETVKDRAGLL 206 (345)
T ss_pred cCCCEEe----eccccC-h------------HhcCCCCCCCCHHHHHHHHHHHHHcCCceeeEEEEeCC-CCHHHHHHHH
Confidence 7777543 332221 1 000012122357889999999999997333 3442 2455555555
Q ss_pred hhccCC
Q 029874 172 IRSSKF 177 (186)
Q Consensus 172 ~~~~~~ 177 (186)
.....+
T Consensus 207 ~~l~~l 212 (345)
T PRK15108 207 LQLANL 212 (345)
T ss_pred HHHHhc
Confidence 433333
No 47
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=46.09 E-value=2e+02 Score=25.09 Aligned_cols=128 Identities=14% Similarity=0.211 Sum_probs=63.9
Q ss_pred HHHHHHHHHhCCceEeCCCCCC------------CHHHHHHHHHHHhhcCCccccceEEEeccCCCChhHHHHHHHHHHH
Q 029874 27 RDLIINAIKIGYRHIDCAADYR------------NEAEVGEALAEAFSTGLVKREDLFITTKLWNSDHGHVLEACKDSLK 94 (186)
Q Consensus 27 ~~~l~~a~~~Gi~~~Dta~~Yg------------~e~~vG~~l~~~~~~~~~~R~~~~i~tK~~~~~~~~i~~~~~~sl~ 94 (186)
.+.+....++|+|.+..+-.-. +...+-++++.+.+.| +..=.+-+..-+...+.+.+.+.++..+
T Consensus 152 ~e~l~~L~~~G~~rvsiGvQS~~~~vl~~l~R~~~~~~~~~ai~~lr~~G-~~~v~~dli~GlPgqt~e~~~~tl~~~~- 229 (453)
T PRK13347 152 AEMLQALAALGFNRASFGVQDFDPQVQKAINRIQPEEMVARAVELLRAAG-FESINFDLIYGLPHQTVESFRETLDKVI- 229 (453)
T ss_pred HHHHHHHHHcCCCEEEECCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhcC-CCcEEEeEEEeCCCCCHHHHHHHHHHHH-
Confidence 4555666667877764332111 3334445555543333 1111222333334446777777776665
Q ss_pred HhCCCcccEEEE-ecCCCCCCCCCCCCCCCCCCCCccccccc-ccHHHHHHHHHHHHHcCCccEEEecCCCchh
Q 029874 95 KLQLDYLDLYLV-HFPVATKHTGVGTTDSALDADGVLEIDTT-ISLETTWHAMEDLVSMGLVRSIGIRYVGILN 166 (186)
Q Consensus 95 ~Lg~~~lDl~~l-H~p~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~l~~~G~ir~iGvsn~~~~~ 166 (186)
+++.+.+.++.+ |.|...... . ...+ ...+.. ........+.+.|.+.|- ..+|+++|..+.
T Consensus 230 ~l~p~~i~~y~l~~~p~~~~~~---~---~~~~---~~lp~~~~~~~~~~~~~~~L~~~Gy-~~~~~~~far~~ 293 (453)
T PRK13347 230 ALSPDRIAVFGYAHVPSRRKNQ---R---LIDE---AALPDAEERLRQARAVADRLLAAGY-VPIGLDHFALPD 293 (453)
T ss_pred hcCCCEEEEeccccccchhhHH---h---cCCc---cCCcCHHHHHHHHHHHHHHHHHCCC-EEEeccceeCCC
Confidence 588888888765 333221100 0 0000 001111 112222345667778886 569999999654
No 48
>PF01175 Urocanase: Urocanase; InterPro: IPR023637 Urocanase [] (also known as imidazolonepropionate hydrolase or urocanate hydratase) is the enzyme that catalyzes the second step in the degradation of histidine, the hydration of urocanate into imidazolonepropionate. urocanate + H2O = 4,5-dihydro-4-oxo-5-imidazolepropanoate Urocanase is found in some bacteria (gene hutU), in the liver of many vertebrates and has also been found in the plant Trifolium repens (white clover). Urocanase is a protein of about 60 Kd, it binds tightly to NAD+ and uses it as an electrophil cofactor. A conserved cysteine has been found to be important for the catalytic mechanism and could be involved in the binding of the NAD+. This enzyme is a symmetric homodimer with tightly bound NAD+ cofactors. Each subunit consists of a typical NAD-binding domain inserted into a larger core domain that forms the dimer interface []. This entry represents the Urocanase subunit structural domain.; GO: 0016153 urocanate hydratase activity; PDB: 2V7G_A 1UWK_A 1UWL_B 1W1U_B 2FKN_C 1X87_B.
Probab=44.10 E-value=76 Score=28.48 Aligned_cols=116 Identities=16% Similarity=0.110 Sum_probs=67.2
Q ss_pred HHHHHHHHHhCCceEe--CCCCC---CCHHHH-------HHHHHHHhhcCCccccceEEEeccCCCChhHH---------
Q 029874 27 RDLIINAIKIGYRHID--CAADY---RNEAEV-------GEALAEAFSTGLVKREDLFITTKLWNSDHGHV--------- 85 (186)
Q Consensus 27 ~~~l~~a~~~Gi~~~D--ta~~Y---g~e~~v-------G~~l~~~~~~~~~~R~~~~i~tK~~~~~~~~i--------- 85 (186)
-+-..+..+.|+..+= ||..| |++.++ .++-++.+... .+..+++++-+..-+-.+-
T Consensus 105 ~e~f~~l~~~GltmYGQMTAGsw~YIG~QGIvqGTyeT~~~aark~~g~~--L~Gk~~lTaGLGGMgGAQplA~~m~g~v 182 (546)
T PF01175_consen 105 WEHFERLEALGLTMYGQMTAGSWIYIGPQGIVQGTYETFLNAARKHFGGD--LAGKLFLTAGLGGMGGAQPLAATMAGGV 182 (546)
T ss_dssp HHHHHHHHHTT---B-TTTTTTT---TTHHHHHHHHHHHHHHHHHHSTTS---TT-EEEEE--STTCCHHHHHHHHTT-E
T ss_pred HHHHHHHHhccchhhccccccceEEEcccceeehhhHHHHHHHHHhcCCC--CcceEEEEecccccccchHHHHHhcCce
Confidence 4556677778888764 55544 454433 34445544422 5677888888754321110
Q ss_pred ----HHHHHHHHHHhCCCcccEEEEecCCCCCCCCCCCCCCCCCCCCcccccccccHHHHHHHHHHHHHcCCccEEEecC
Q 029874 86 ----LEACKDSLKKLQLDYLDLYLVHFPVATKHTGVGTTDSALDADGVLEIDTTISLETTWHAMEDLVSMGLVRSIGIRY 161 (186)
Q Consensus 86 ----~~~~~~sl~~Lg~~~lDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvsn 161 (186)
.-.-...-+|+.+.|+|.+. .++.++++...+.+++|+..+||+-.
T Consensus 183 ~l~vEvd~~ri~kR~~~g~ld~~~------------------------------~~ldea~~~~~ea~~~~~~~SIg~~G 232 (546)
T PF01175_consen 183 GLIVEVDPSRIEKRLEQGYLDEVT------------------------------DDLDEALARAKEARAKKEPLSIGLLG 232 (546)
T ss_dssp EEEEES-HHHHHHHHHTTSSSEEE------------------------------SSHHHHHHHHHHHHHTT--EEEEEES
T ss_pred EEEEEECHHHHHHHHhCCCeeEEc------------------------------CCHHHHHHHHHHhhccCCeeEEEEec
Confidence 01122334678888999873 12678999999999999999999987
Q ss_pred CCchhHhhHHhhcc
Q 029874 162 VGILNPCEHSIRSS 175 (186)
Q Consensus 162 ~~~~~l~~~~~~~~ 175 (186)
|..++.+.+++.+
T Consensus 233 -N~ad~~~~l~~~~ 245 (546)
T PF01175_consen 233 -NAADLWEELVERG 245 (546)
T ss_dssp --HHHHHHHHHHTT
T ss_pred -cHHHHHHHHHHcC
Confidence 8888888887764
No 49
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=42.89 E-value=2.1e+02 Score=24.24 Aligned_cols=83 Identities=17% Similarity=0.170 Sum_probs=56.3
Q ss_pred ccceEEEeccCCC----ChhHHHHHHHHHHHHhCCCcccEEEEecCCCCCCCCCCCCCCCCCCCCcccccccccHHHHHH
Q 029874 68 REDLFITTKLWNS----DHGHVLEACKDSLKKLQLDYLDLYLVHFPVATKHTGVGTTDSALDADGVLEIDTTISLETTWH 143 (186)
Q Consensus 68 R~~~~i~tK~~~~----~~~~i~~~~~~sl~~Lg~~~lDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (186)
+.-+++.+|+--. ..+.+.+.+++.++..|....+++.+..-.. ..+.+.++
T Consensus 91 ~piilV~NK~DLl~k~~~~~~~~~~l~~~~k~~g~~~~~i~~vSAk~g------------------------~gv~eL~~ 146 (360)
T TIGR03597 91 NPVLLVGNKIDLLPKSVNLSKIKEWMKKRAKELGLKPVDIILVSAKKG------------------------NGIDELLD 146 (360)
T ss_pred CCEEEEEEchhhCCCCCCHHHHHHHHHHHHHHcCCCcCcEEEecCCCC------------------------CCHHHHHH
Confidence 3456788998321 3455666666667777765446665543211 12677888
Q ss_pred HHHHHHHcCCccEEEecCCCchhHhhHHhhc
Q 029874 144 AMEDLVSMGLVRSIGIRYVGILNPCEHSIRS 174 (186)
Q Consensus 144 ~l~~l~~~G~ir~iGvsn~~~~~l~~~~~~~ 174 (186)
.+.++.+.+.+--+|.+|-+-..++-.++..
T Consensus 147 ~l~~~~~~~~v~~vG~~nvGKStliN~l~~~ 177 (360)
T TIGR03597 147 KIKKARNKKDVYVVGVTNVGKSSLINKLLKQ 177 (360)
T ss_pred HHHHHhCCCeEEEECCCCCCHHHHHHHHHhh
Confidence 8888776678999999999998888888764
No 50
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=42.58 E-value=2.1e+02 Score=24.20 Aligned_cols=76 Identities=12% Similarity=0.065 Sum_probs=38.2
Q ss_pred ChhHHHHHHHHHHHHhCCCcccEEEEecCCCCCCCCCCCCCCCCCCCCcccccccccHHHHHHHHH-HHHHcCCccEEEe
Q 029874 81 DHGHVLEACKDSLKKLQLDYLDLYLVHFPVATKHTGVGTTDSALDADGVLEIDTTISLETTWHAME-DLVSMGLVRSIGI 159 (186)
Q Consensus 81 ~~~~i~~~~~~sl~~Lg~~~lDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~l~~~G~ir~iGv 159 (186)
+.+++++.++..+ +++.+++.++.+.-..... ....-..+....++.....+.+.... .|.+.|- ..+++
T Consensus 173 t~~~~~~tl~~~~-~l~~~~i~~y~l~~~~gT~-------l~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~G~-~~ye~ 243 (375)
T PRK05628 173 SDDDWRASLDAAL-EAGVDHVSAYALIVEDGTA-------LARRVRRGELPAPDDDVLADRYELADARLSAAGF-DWYEV 243 (375)
T ss_pred CHHHHHHHHHHHH-hcCCCEEEeeeeecCCCCh-------HHHHhhcCCCCCCChHHHHHHHHHHHHHHHHcCC-Ceeee
Confidence 6677777666544 5888998888776321110 00000011111111111233444444 4555565 57899
Q ss_pred cCCCch
Q 029874 160 RYVGIL 165 (186)
Q Consensus 160 sn~~~~ 165 (186)
|||..+
T Consensus 244 s~fa~~ 249 (375)
T PRK05628 244 SNWARP 249 (375)
T ss_pred ccccCC
Confidence 999864
No 51
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=41.33 E-value=2.2e+02 Score=24.17 Aligned_cols=137 Identities=10% Similarity=0.012 Sum_probs=0.0
Q ss_pred cCCCCcCCccccccccCCchhHHHHHHHHHHhCCceEeCCCCCC--------CHHHHHHHHHHHhhcCCccccceEEEec
Q 029874 5 LNNGFKMPIIGLGVWRMDESNIRDLIINAIKIGYRHIDCAADYR--------NEAEVGEALAEAFSTGLVKREDLFITTK 76 (186)
Q Consensus 5 ~~tg~~v~~lglG~~~~~~~~~~~~l~~a~~~Gi~~~Dta~~Yg--------~e~~vG~~l~~~~~~~~~~R~~~~i~tK 76 (186)
+|+|.+.+...|-+ ++..++++.-.++|++.|+....-. .+..+-+.++.. ..-.+....-
T Consensus 54 lRDG~Q~~g~~~s~-----e~Ki~ia~~L~~~GV~~IEvGs~vspk~vPqmad~~ev~~~i~~~------~~~~~~~l~~ 122 (347)
T PLN02746 54 PRDGLQNEKNIVPT-----SVKVELIQRLVSSGLPVVEATSFVSPKWVPQLADAKDVMAAVRNL------EGARFPVLTP 122 (347)
T ss_pred CCccCcCCCCCCCH-----HHHHHHHHHHHHcCCCEEEECCCcCcccccccccHHHHHHHHHhc------cCCceeEEcC
Q ss_pred cCCCChhHHHHHHHHHHHHhCCCcccEEEEecCCCCCCCCCCCCCCCCCCCCcccccccccHHHHHHHHHHHHHcCCccE
Q 029874 77 LWNSDHGHVLEACKDSLKKLQLDYLDLYLVHFPVATKHTGVGTTDSALDADGVLEIDTTISLETTWHAMEDLVSMGLVRS 156 (186)
Q Consensus 77 ~~~~~~~~i~~~~~~sl~~Lg~~~lDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~ 156 (186)
...+++++++. |++.+.+++--++..... ..+....+.+....+..+..++.|.--.
T Consensus 123 ----n~~die~A~~~-----g~~~v~i~~s~Sd~h~~~--------------n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~ 179 (347)
T PLN02746 123 ----NLKGFEAAIAA-----GAKEVAVFASASESFSKS--------------NINCSIEESLVRYREVALAAKKHSIPVR 179 (347)
T ss_pred ----CHHHHHHHHHc-----CcCEEEEEEecCHHHHHH--------------HhCCCHHHHHHHHHHHHHHHHHcCCeEE
Q ss_pred EEecC-CC-----------chhHhhHHhhcc
Q 029874 157 IGIRY-VG-----------ILNPCEHSIRSS 175 (186)
Q Consensus 157 iGvsn-~~-----------~~~l~~~~~~~~ 175 (186)
..+|. |+ ..++++.+.+.|
T Consensus 180 ~~is~~fg~p~~~r~~~~~l~~~~~~~~~~G 210 (347)
T PLN02746 180 GYVSCVVGCPIEGPVPPSKVAYVAKELYDMG 210 (347)
T ss_pred EEEEeeecCCccCCCCHHHHHHHHHHHHHcC
No 52
>PRK02399 hypothetical protein; Provisional
Probab=41.01 E-value=1e+02 Score=26.84 Aligned_cols=60 Identities=20% Similarity=0.285 Sum_probs=39.7
Q ss_pred HHHHHHHHHhCCCcccEEEEecCCCCCCCCCCCCCCCCCCCCcccccccccHHHHHHHHHHHHHcCCccEE---------
Q 029874 87 EACKDSLKKLQLDYLDLYLVHFPVATKHTGVGTTDSALDADGVLEIDTTISLETTWHAMEDLVSMGLVRSI--------- 157 (186)
Q Consensus 87 ~~~~~sl~~Lg~~~lDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~i--------- 157 (186)
.+++...++|.-...|++.+|.-... =++||+|.++|.+..+
T Consensus 199 p~v~~~~~~Le~~GyEvlVFHATG~G-----------------------------GraME~Li~~G~~~gVlDlTttEv~ 249 (406)
T PRK02399 199 PCVQAAREELEARGYEVLVFHATGTG-----------------------------GRAMEKLIDSGLIAGVLDLTTTEVC 249 (406)
T ss_pred HHHHHHHHHHHhCCCeEEEEcCCCCc-----------------------------hHHHHHHHHcCCceEEEEcchHHHH
Confidence 44555555555455799999975443 3689999999998755
Q ss_pred -----EecCCCchhHhhHHhhccC
Q 029874 158 -----GIRYVGILNPCEHSIRSSK 176 (186)
Q Consensus 158 -----Gvsn~~~~~l~~~~~~~~~ 176 (186)
|+.+.++.+ ..++.+.|-
T Consensus 250 d~l~GGv~sagp~R-l~Aa~~~gI 272 (406)
T PRK02399 250 DELFGGVLAAGPDR-LEAAARTGI 272 (406)
T ss_pred HHHhCcCccCCccH-HHHHHHcCC
Confidence 566666666 455555543
No 53
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=40.90 E-value=2.3e+02 Score=24.09 Aligned_cols=51 Identities=22% Similarity=0.257 Sum_probs=33.5
Q ss_pred ecCCCCcCCccccccccCCchhHHHHHHHHHHhCCceEeCCCCCCCHHHHHHHHHHH
Q 029874 4 TLNNGFKMPIIGLGVWRMDESNIRDLIINAIKIGYRHIDCAADYRNEAEVGEALAEA 60 (186)
Q Consensus 4 ~~~tg~~v~~lglG~~~~~~~~~~~~l~~a~~~Gi~~~Dta~~Yg~e~~vG~~l~~~ 60 (186)
.+|.|.+.+.+.| +.++..++...-.++|+..|+....-.++.. -++++..
T Consensus 7 TLRDG~Q~~~~~~-----s~~~k~~ia~~L~~~Gv~~IEvG~p~~~~~~-~e~i~~i 57 (363)
T TIGR02090 7 TLRDGEQTPGVSL-----TVEQKVEIARKLDELGVDVIEAGFPIASEGE-FEAIKKI 57 (363)
T ss_pred CCCCcCCCCCCCC-----CHHHHHHHHHHHHHcCCCEEEEeCCCCChHH-HHHHHHH
Confidence 3577877765444 5577788888888999999997544334333 2445544
No 54
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=39.64 E-value=3.3e+02 Score=25.65 Aligned_cols=36 Identities=6% Similarity=0.054 Sum_probs=27.2
Q ss_pred HHHHHcCCccEEEecCCCchhHhhHHhhccCCCCCc
Q 029874 146 EDLVSMGLVRSIGIRYVGILNPCEHSIRSSKFSTKF 181 (186)
Q Consensus 146 ~~l~~~G~ir~iGvsn~~~~~l~~~~~~~~~~~~~~ 181 (186)
.++|+.=.+.-+++.++...+.++.+++.+..|.++
T Consensus 680 ~~ik~~~~~pv~~~G~i~~~~~a~~~l~~g~~D~v~ 715 (765)
T PRK08255 680 DRIRNEAGIATIAVGAISEADHVNSIIAAGRADLCA 715 (765)
T ss_pred HHHHHHcCCEEEEeCCCCCHHHHHHHHHcCCcceee
Confidence 445554456778888888887799999999988554
No 55
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=38.80 E-value=2.5e+02 Score=24.01 Aligned_cols=75 Identities=8% Similarity=0.007 Sum_probs=45.5
Q ss_pred HHHHHHHHHHhC-CCcccEEEEecCCCCCCCCCCCCCCCCCCCCcccccccccHHHHHHHHHHHHHcCCccEEEecCCCc
Q 029874 86 LEACKDSLKKLQ-LDYLDLYLVHFPVATKHTGVGTTDSALDADGVLEIDTTISLETTWHAMEDLVSMGLVRSIGIRYVGI 164 (186)
Q Consensus 86 ~~~~~~sl~~Lg-~~~lDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvsn~~~ 164 (186)
...+-+.|+..| ++|+++.-.++...... .... ..-.....+..++...+--|.+.+.+.
T Consensus 239 ~~~la~~L~~~G~~d~i~vs~~~~~~~~~~------------------~~~~-~~~~~~~a~~i~~~~~~pvi~~G~i~~ 299 (363)
T COG1902 239 AVELAKALEEAGLVDYIHVSEGGYERGGTI------------------TVSG-PGYQVEFAARIKKAVRIPVIAVGGIND 299 (363)
T ss_pred HHHHHHHHHhcCCccEEEeecccccCCCCc------------------cccc-cchhHHHHHHHHHhcCCCEEEeCCCCC
Confidence 345677788889 68888876665211100 0000 001233444556665677777776777
Q ss_pred hhHhhHHhhccCCCC
Q 029874 165 LNPCEHSIRSSKFST 179 (186)
Q Consensus 165 ~~l~~~~~~~~~~~~ 179 (186)
.+.++.++++|..|.
T Consensus 300 ~~~Ae~~l~~g~aDl 314 (363)
T COG1902 300 PEQAEEILASGRADL 314 (363)
T ss_pred HHHHHHHHHcCCCCE
Confidence 777999999998874
No 56
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=38.64 E-value=95 Score=29.82 Aligned_cols=49 Identities=16% Similarity=0.206 Sum_probs=37.7
Q ss_pred cccEEEEecCCCCCCCCCCCCCCCCCCCCcccccccccHHHHHHHHHHHHHcCCccEEEecCCCchhHhhHH
Q 029874 100 YLDLYLVHFPVATKHTGVGTTDSALDADGVLEIDTTISLETTWHAMEDLVSMGLVRSIGIRYVGILNPCEHS 171 (186)
Q Consensus 100 ~lDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvsn~~~~~l~~~~ 171 (186)
+..++++..|... .|+ .+....|....++++.|+ +|=+.+|++++ ++++
T Consensus 716 ~p~vi~LDEPstG-------------------mDP-~arr~lW~ii~~~~k~g~--aiiLTSHsMeE-~EaL 764 (885)
T KOG0059|consen 716 DPSVILLDEPSTG-------------------LDP-KARRHLWDIIARLRKNGK--AIILTSHSMEE-AEAL 764 (885)
T ss_pred CCCEEEecCCCCC-------------------CCH-HHHHHHHHHHHHHHhcCC--EEEEEcCCHHH-HHHH
Confidence 5667777777654 333 447889999999999999 88899999988 5544
No 57
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=37.17 E-value=1.9e+02 Score=22.13 Aligned_cols=100 Identities=14% Similarity=0.204 Sum_probs=51.3
Q ss_pred CCcCCccccccccCCchhHHHHHHHHHHhCCceEeCCCCCCC---HHHHHHHHHHHhhcCCccccceEEEeccCCC----
Q 029874 8 GFKMPIIGLGVWRMDESNIRDLIINAIKIGYRHIDCAADYRN---EAEVGEALAEAFSTGLVKREDLFITTKLWNS---- 80 (186)
Q Consensus 8 g~~v~~lglG~~~~~~~~~~~~l~~a~~~Gi~~~Dta~~Yg~---e~~vG~~l~~~~~~~~~~R~~~~i~tK~~~~---- 80 (186)
|..+--+||+.-..-+.+..+.+. .+++.+-.+|+.++... ...+..+++...+.+ |...|++++.++..
T Consensus 33 ~~~~iNLGfsG~~~le~~~a~~ia-~~~a~~~~ld~~~N~~~~~~~~~~~~fv~~iR~~h--P~tPIllv~~~~~~~~~~ 109 (178)
T PF14606_consen 33 GLDVINLGFSGNGKLEPEVADLIA-EIDADLIVLDCGPNMSPEEFRERLDGFVKTIREAH--PDTPILLVSPIPYPAGYF 109 (178)
T ss_dssp T-EEEEEE-TCCCS--HHHHHHHH-HS--SEEEEEESHHCCTTTHHHHHHHHHHHHHTT---SSS-EEEEE----TTTTS
T ss_pred CCCeEeeeecCccccCHHHHHHHh-cCCCCEEEEEeecCCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEecCCcccccc
Confidence 344444566553333344444444 34777778888888542 344445555443344 67778888877433
Q ss_pred ------ChhHHHHHHHHHHHHh-CCCcccEEEEecCC
Q 029874 81 ------DHGHVLEACKDSLKKL-QLDYLDLYLVHFPV 110 (186)
Q Consensus 81 ------~~~~i~~~~~~sl~~L-g~~~lDl~~lH~p~ 110 (186)
.....++.+++..++| .-..-++++++..+
T Consensus 110 ~~~~~~~~~~~~~~~r~~v~~l~~~g~~nl~~l~g~~ 146 (178)
T PF14606_consen 110 DNSRGETVEEFREALREAVEQLRKEGDKNLYYLDGEE 146 (178)
T ss_dssp --TTS--HHHHHHHHHHHHHHHHHTT-TTEEEE-HHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHcCCCcEEEeCchh
Confidence 2466777777777777 23456788888654
No 58
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=36.52 E-value=79 Score=24.57 Aligned_cols=40 Identities=8% Similarity=0.145 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHcCCccEEEecCCCchhHhhHHhhccCC
Q 029874 138 LETTWHAMEDLVSMGLVRSIGIRYVGILNPCEHSIRSSKF 177 (186)
Q Consensus 138 ~~~~~~~l~~l~~~G~ir~iGvsn~~~~~l~~~~~~~~~~ 177 (186)
+..-.+.|++|.+-|+=--|++.||..++....++-.|+.
T Consensus 88 ~~~P~~vL~EmlRVgr~~IVsFPNFg~W~~R~~l~~~Grm 127 (193)
T PF07021_consen 88 VRRPDEVLEEMLRVGRRAIVSFPNFGHWRNRLQLLLRGRM 127 (193)
T ss_pred HhHHHHHHHHHHHhcCeEEEEecChHHHHHHHHHHhcCCC
Confidence 3455677889999999889999999999976666656653
No 59
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=36.02 E-value=55 Score=22.99 Aligned_cols=42 Identities=5% Similarity=-0.116 Sum_probs=36.0
Q ss_pred CCchhHHHHHHHHHHhCCceEeCCCCCC-CHHHHHHHHHHHhh
Q 029874 21 MDESNIRDLIINAIKIGYRHIDCAADYR-NEAEVGEALAEAFS 62 (186)
Q Consensus 21 ~~~~~~~~~l~~a~~~Gi~~~Dta~~Yg-~e~~vG~~l~~~~~ 62 (186)
++.+.-.+++...++.|.+.-+.|..|| +...+.+|++++..
T Consensus 13 ys~EfK~~aV~~~~~~g~sv~evA~e~gIs~~tl~~W~r~y~~ 55 (121)
T PRK09413 13 RTTQEKIAIVQQSFEPGMTVSLVARQHGVAASQLFLWRKQYQE 55 (121)
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHhh
Confidence 4556667888999999999999999999 89999999998733
No 60
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=35.52 E-value=1.1e+02 Score=26.30 Aligned_cols=71 Identities=15% Similarity=0.320 Sum_probs=42.7
Q ss_pred HhCCceEe-----CCCCCC-CHHHHHHHHHHHhhcCCccccceEEEeccCCC------------C----hhHHHHHHHHH
Q 029874 35 KIGYRHID-----CAADYR-NEAEVGEALAEAFSTGLVKREDLFITTKLWNS------------D----HGHVLEACKDS 92 (186)
Q Consensus 35 ~~Gi~~~D-----ta~~Yg-~e~~vG~~l~~~~~~~~~~R~~~~i~tK~~~~------------~----~~~i~~~~~~s 92 (186)
+.+...+| ++.-.. +...+.+.++++ .+.=+|+.||+-.. + .+.|++.+.+.
T Consensus 109 ~~~~~~yD~fiii~s~rf~~ndv~La~~i~~~------gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~ 182 (376)
T PF05049_consen 109 EVKFYRYDFFIIISSERFTENDVQLAKEIQRM------GKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLEN 182 (376)
T ss_dssp HTTGGG-SEEEEEESSS--HHHHHHHHHHHHT------T-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHH
T ss_pred HccccccCEEEEEeCCCCchhhHHHHHHHHHc------CCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHH
Confidence 44555444 333333 677888999885 45557788998321 1 36788889999
Q ss_pred HHHhCCCcccEEEEecCCC
Q 029874 93 LKKLQLDYLDLYLVHFPVA 111 (186)
Q Consensus 93 l~~Lg~~~lDl~~lH~p~~ 111 (186)
|++-|+....+|++-+-+.
T Consensus 183 L~k~gv~~P~VFLVS~~dl 201 (376)
T PF05049_consen 183 LQKAGVSEPQVFLVSSFDL 201 (376)
T ss_dssp HHCTT-SS--EEEB-TTTT
T ss_pred HHHcCCCcCceEEEeCCCc
Confidence 9999999999999987543
No 61
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=34.45 E-value=2.5e+02 Score=22.74 Aligned_cols=130 Identities=12% Similarity=0.036 Sum_probs=76.3
Q ss_pred CCccccccccCCchhHHHHHHHHH-HhCCceEeCCCCCC-----CHHHHHHHHHHHhhcCCccccceEEE-eccCCCChh
Q 029874 11 MPIIGLGVWRMDESNIRDLIINAI-KIGYRHIDCAADYR-----NEAEVGEALAEAFSTGLVKREDLFIT-TKLWNSDHG 83 (186)
Q Consensus 11 v~~lglG~~~~~~~~~~~~l~~a~-~~Gi~~~Dta~~Yg-----~e~~vG~~l~~~~~~~~~~R~~~~i~-tK~~~~~~~ 83 (186)
=|++-+||..++.. +.+..|+ .+|...+-.|-.-- .+..+-+.+ +.+.+.+. +--...+.+
T Consensus 9 ~SRl~~Gtgky~s~---~~~~~ai~aSg~~ivTva~rR~~~~~~~~~~~~~~i---------~~~~~~~lpNTaG~~ta~ 76 (248)
T cd04728 9 SSRLLLGTGKYPSP---AIMKEAIEASGAEIVTVALRRVNIGDPGGESFLDLL---------DKSGYTLLPNTAGCRTAE 76 (248)
T ss_pred ecceEEecCCCCCH---HHHHHHHHHhCCCEEEEEEEecccCCCCcchHHhhc---------cccCCEECCCCCCCCCHH
Confidence 47888999877533 3445555 34766554432110 112222222 33334332 222334667
Q ss_pred HHHHHHHHHHHHhCCCcccEEEEecCCCCCCCCCCCCCCCCCCCCcccccccccHHHHHHHHHHHHHcCCccEEEecCCC
Q 029874 84 HVLEACKDSLKKLQLDYLDLYLVHFPVATKHTGVGTTDSALDADGVLEIDTTISLETTWHAMEDLVSMGLVRSIGIRYVG 163 (186)
Q Consensus 84 ~i~~~~~~sl~~Lg~~~lDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvsn~~ 163 (186)
...+..+-..+.++++++-+=.+..+.+-. .+..+++++.++|.++|.+ -+-+|+ +
T Consensus 77 eAv~~a~lare~~~~~~iKlEVi~d~~~Ll----------------------pd~~~tv~aa~~L~~~Gf~-vlpyc~-d 132 (248)
T cd04728 77 EAVRTARLAREALGTDWIKLEVIGDDKTLL----------------------PDPIETLKAAEILVKEGFT-VLPYCT-D 132 (248)
T ss_pred HHHHHHHHHHHHhCCCeEEEEEecCccccc----------------------cCHHHHHHHHHHHHHCCCE-EEEEeC-C
Confidence 777777778888899988888877665431 2367899999999999874 344555 3
Q ss_pred chhHhhHHhhccC
Q 029874 164 ILNPCEHSIRSSK 176 (186)
Q Consensus 164 ~~~l~~~~~~~~~ 176 (186)
...+++++.+.|.
T Consensus 133 d~~~ar~l~~~G~ 145 (248)
T cd04728 133 DPVLAKRLEDAGC 145 (248)
T ss_pred CHHHHHHHHHcCC
Confidence 3444666666643
No 62
>TIGR00238 KamA family protein. Note that the E. coli homolog was expressed in E. coli and purified and found not to display display lysine 2,3-aminomutase activity. Active site residues are found in 100 residue extension in B. subtilis. Name changed to KamA family protein.
Probab=34.19 E-value=2.8e+02 Score=23.21 Aligned_cols=103 Identities=14% Similarity=0.045 Sum_probs=57.7
Q ss_pred hhHHHHHHHHHH-hCCceEeCCCCCC---CHHHHHHHHHHHhhcCCccccceEEEeccCCCChhHHHHHHHHHHHHhCCC
Q 029874 24 SNIRDLIINAIK-IGYRHIDCAADYR---NEAEVGEALAEAFSTGLVKREDLFITTKLWNSDHGHVLEACKDSLKKLQLD 99 (186)
Q Consensus 24 ~~~~~~l~~a~~-~Gi~~~Dta~~Yg---~e~~vG~~l~~~~~~~~~~R~~~~i~tK~~~~~~~~i~~~~~~sl~~Lg~~ 99 (186)
++..+++.+.-+ .|++-|--+.+-. +...+...++.+.+-. ....+.+.|+.....+..+.+.+-+.|++.|..
T Consensus 145 ~~~~~~i~~i~~~~~i~eV~lsGGDPLl~~d~~L~~ll~~L~~i~--~~~~IRi~tr~~~~~P~rit~el~~~L~~~~~~ 222 (331)
T TIGR00238 145 KKWQKALDYIAEHPEIIEILISGGDPLMAKDHELEWLLKRLEEIP--HLVRLRIGTRLPVVIPQRITDELCELLASFELQ 222 (331)
T ss_pred HHHHHHHHHHHhCCCcCEEEEECCccccCCHHHHHHHHHHHHhcC--CccEEEeecCCCccCchhcCHHHHHHHHhcCCc
Confidence 445566665543 3777555443221 3334555555442111 223567777775555666777777788887765
Q ss_pred cccEEEEecCCCCCCCCCCCCCCCCCCCCcccccccccHHHHHHHHHHHHHcCC
Q 029874 100 YLDLYLVHFPVATKHTGVGTTDSALDADGVLEIDTTISLETTWHAMEDLVSMGL 153 (186)
Q Consensus 100 ~lDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ 153 (186)
.+ +..|..... +....+.++++.|++.|.
T Consensus 223 ~~--~vsh~nh~~-----------------------Ei~~~~~~ai~~L~~aGi 251 (331)
T TIGR00238 223 LM--LVTHINHCN-----------------------EITEEFAEAMKKLRTVNV 251 (331)
T ss_pred EE--EEccCCChH-----------------------hCCHHHHHHHHHHHHcCC
Confidence 33 333432111 012467899999999997
No 63
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=33.54 E-value=2.6e+02 Score=22.64 Aligned_cols=129 Identities=12% Similarity=0.032 Sum_probs=73.2
Q ss_pred CCccccccccCCchhHHHHHHHHHHh-CCceEeCCCC-----CCCHHHHHHHHHHHhhcCCccccceEEE-eccCCCChh
Q 029874 11 MPIIGLGVWRMDESNIRDLIINAIKI-GYRHIDCAAD-----YRNEAEVGEALAEAFSTGLVKREDLFIT-TKLWNSDHG 83 (186)
Q Consensus 11 v~~lglG~~~~~~~~~~~~l~~a~~~-Gi~~~Dta~~-----Yg~e~~vG~~l~~~~~~~~~~R~~~~i~-tK~~~~~~~ 83 (186)
=|++-+||..++.. +.+..|+++ |-..+-.|-- -..+..+=+.| .+.++.+- .--...+.+
T Consensus 16 ~SRLllGTgky~s~---~~~~~av~asg~~ivTvAlRR~~~~~~~~~~~l~~l---------~~~~~~~LPNTaGc~tae 83 (262)
T COG2022 16 DSRLLLGTGKYPSP---AVLAEAVRASGSEIVTVALRRVNATRPGGDGILDLL---------IPLGVTLLPNTAGCRTAE 83 (262)
T ss_pred eeeEEEecCCCCCH---HHHHHHHHhcCCceEEEEEEeecccCCCcchHHHHh---------hhcCcEeCCCccccCCHH
Confidence 47888888777533 344445432 4443322210 00122222222 23334332 222344677
Q ss_pred HHHHHHHHHHHHhCCCcccEEEEecCCCCCCCCCCCCCCCCCCCCcccccccccHHHHHHHHHHHHHcCCccEEEecCCC
Q 029874 84 HVLEACKDSLKKLQLDYLDLYLVHFPVATKHTGVGTTDSALDADGVLEIDTTISLETTWHAMEDLVSMGLVRSIGIRYVG 163 (186)
Q Consensus 84 ~i~~~~~~sl~~Lg~~~lDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvsn~~ 163 (186)
...+..+-..+.++++++-+=.+..+.+-. .+..+++++.|.|+++|-+---= ++ .
T Consensus 84 EAv~tArlARE~~~t~wiKlEVi~d~~tLl----------------------PD~~etl~Aae~Lv~eGF~VlPY-~~-d 139 (262)
T COG2022 84 EAVRTARLAREALGTNWIKLEVIGDEKTLL----------------------PDPIETLKAAEQLVKEGFVVLPY-TT-D 139 (262)
T ss_pred HHHHHHHHHHHHccCCeEEEEEecCCcccC----------------------CChHHHHHHHHHHHhCCCEEeec-cC-C
Confidence 777778888899999999888777655431 12568999999999998753211 11 2
Q ss_pred chhHhhHHhhcc
Q 029874 164 ILNPCEHSIRSS 175 (186)
Q Consensus 164 ~~~l~~~~~~~~ 175 (186)
..-+++++.+.|
T Consensus 140 D~v~arrLee~G 151 (262)
T COG2022 140 DPVLARRLEEAG 151 (262)
T ss_pred CHHHHHHHHhcC
Confidence 334667776665
No 64
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=31.97 E-value=1.5e+02 Score=24.94 Aligned_cols=40 Identities=8% Similarity=0.046 Sum_probs=31.7
Q ss_pred HHHHHHHHHcCCccEEEecCCCchhHhhHHhhccCCCCCc
Q 029874 142 WHAMEDLVSMGLVRSIGIRYVGILNPCEHSIRSSKFSTKF 181 (186)
Q Consensus 142 ~~~l~~l~~~G~ir~iGvsn~~~~~l~~~~~~~~~~~~~~ 181 (186)
|....++++.-.+.-+++..+...+.++.+++++..|.+.
T Consensus 264 ~~~~~~ik~~~~ipVi~~G~i~~~~~a~~~l~~g~~D~V~ 303 (337)
T PRK13523 264 VPFAEHIREHANIATGAVGLITSGAQAEEILQNNRADLIF 303 (337)
T ss_pred HHHHHHHHhhcCCcEEEeCCCCCHHHHHHHHHcCCCChHH
Confidence 4556667777678888888888888899999999998553
No 65
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=31.66 E-value=1e+02 Score=22.87 Aligned_cols=31 Identities=16% Similarity=0.082 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHcCCccEEEecCCCchhHhhH
Q 029874 139 ETTWHAMEDLVSMGLVRSIGIRYVGILNPCEH 170 (186)
Q Consensus 139 ~~~~~~l~~l~~~G~ir~iGvsn~~~~~l~~~ 170 (186)
.++.++++.+++.| ++-|++++.....+.+.
T Consensus 115 ~~~i~~~~~ak~~G-a~vI~IT~~~~s~La~~ 145 (177)
T cd05006 115 PNVLKALEAAKERG-MKTIALTGRDGGKLLEL 145 (177)
T ss_pred HHHHHHHHHHHHCC-CEEEEEeCCCCCchhhh
Confidence 47899999999998 99999998766654443
No 66
>PF00388 PI-PLC-X: Phosphatidylinositol-specific phospholipase C, X domain This entry is for the whole phospholipase C protein; InterPro: IPR000909 Phosphatidylinositol-specific phospholipase C (3.1.4.11 from EC), a eukaryotic intracellular enzyme, plays an important role in signal transduction processes []. It catalyzes the hydrolysis of 1-phosphatidyl-D-myo-inositol-3,4,5-triphosphate into the second messenger molecules diacylglycerol and inositol-1,4,5-triphosphate. This catalytic process is tightly regulated by reversible phosphorylation and binding of regulatory proteins [, , ]. In mammals, there are at least 6 different isoforms of PI-PLC, they differ in their domain structure, their regulation, and their tissue distribution. Lower eukaryotes also possess multiple isoforms of PI-PLC. All eukaryotic PI-PLCs contain two regions of homology, sometimes referred to as the 'X-box' and 'Y-box'. The order of these two regions is always the same (NH2-X-Y-COOH), but the spacing is variable. In most isoforms, the distance between these two regions is only 50-100 residues but in the gamma isoforms one PH domain, two SH2 domains, and one SH3 domain are inserted between the two PLC-specific domains. The two conserved regions have been shown to be important for the catalytic activity. By profile analysis, we could show that sequences with significant similarity to the X-box domain occur also in prokaryotic and trypanosome PI-specific phospholipases C. Apart from this region, the prokaryotic enzymes show no similarity to their eukaryotic counterparts.; GO: 0004629 phospholipase C activity, 0006629 lipid metabolic process, 0035556 intracellular signal transduction; PDB: 2FJU_B 2ZKM_X 3V18_A 3V1H_A 3V16_A 3QR1_D 3EA3_A 3EA1_A 2OR2_A 1T6M_B ....
Probab=31.64 E-value=40 Score=24.38 Aligned_cols=70 Identities=17% Similarity=0.120 Sum_probs=34.8
Q ss_pred hHHHHHHHHHHhCCceEeCCCC---------C-C-------CHHHHHHHHHHHhhcCCccccceEEEeccCCCC--hhHH
Q 029874 25 NIRDLIINAIKIGYRHIDCAAD---------Y-R-------NEAEVGEALAEAFSTGLVKREDLFITTKLWNSD--HGHV 85 (186)
Q Consensus 25 ~~~~~l~~a~~~Gi~~~Dta~~---------Y-g-------~e~~vG~~l~~~~~~~~~~R~~~~i~tK~~~~~--~~~i 85 (186)
.....+...++.|||+||-=-. | | +-..+=+.++++...+ +.+-+++..|-.... ...+
T Consensus 27 ~Q~~~i~~QL~~GiR~lDlrv~~~~~~~~~v~Hg~~~~~~~~~~dvL~~i~~fl~~~--p~E~VIl~~~~~~~~~~~~~~ 104 (146)
T PF00388_consen 27 TQSWSIREQLESGIRYLDLRVWDGNDGELVVYHGITSTSGITFEDVLNDIRDFLFEH--PSEPVILSLKHEYSPEQQNKL 104 (146)
T ss_dssp B-SHHHHHHHHTT--EEEEEEEEETTSSEEEEETTSEE-EEEHHHHHHHHHHHTTHS--TTS-EEEEEEEESTHHHHHHH
T ss_pred cchHhHHHHHhccCceEEEEEEcCCCCceEEEeCCEeeeeEeHHHHHHHHHHHHhcC--CCeEEEEEeecccchhhHHHH
Confidence 3456889999999999983111 1 1 2233333444443344 555566666665431 2344
Q ss_pred HHHHHHHHHHh
Q 029874 86 LEACKDSLKKL 96 (186)
Q Consensus 86 ~~~~~~sl~~L 96 (186)
.+.+++.+...
T Consensus 105 ~~~~~~~l~~~ 115 (146)
T PF00388_consen 105 AEILKEILGDR 115 (146)
T ss_dssp HHHHHHHHGGG
T ss_pred HHHHHHHHhhh
Confidence 55555555443
No 67
>COG0796 MurI Glutamate racemase [Cell envelope biogenesis, outer membrane]
Probab=31.28 E-value=3e+02 Score=22.61 Aligned_cols=66 Identities=12% Similarity=0.096 Sum_probs=46.0
Q ss_pred ceEeCCCCCCCHHHHHHHHHHHhhcCCccccceE-EE-eccCCC---ChhHHHHHHHHHHHHhCCCcccEEEEecCCCC
Q 029874 39 RHIDCAADYRNEAEVGEALAEAFSTGLVKREDLF-IT-TKLWNS---DHGHVLEACKDSLKKLQLDYLDLYLVHFPVAT 112 (186)
Q Consensus 39 ~~~Dta~~Yg~e~~vG~~l~~~~~~~~~~R~~~~-i~-tK~~~~---~~~~i~~~~~~sl~~Lg~~~lDl~~lH~p~~~ 112 (186)
=+||+. -|--.++-+..+++ |-++++ +. ++-+++ +.+.|++-..+.+..|...+++++.+.+...+
T Consensus 9 gvFDSG--VGGLsVlrei~~~L------P~e~~iY~~D~a~~PYG~ks~e~I~~~~~~i~~~l~~~~ik~lVIACNTAS 79 (269)
T COG0796 9 GVFDSG--VGGLSVLREIRRQL------PDEDIIYVGDTARFPYGEKSEEEIRERTLEIVDFLLERGIKALVIACNTAS 79 (269)
T ss_pred EEEECC--CCcHHHHHHHHHHC------CCCcEEEEecCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCCEEEEecchHH
Confidence 367753 33455566666664 666654 43 444443 78999999999999998888999999997543
No 68
>COG3215 PilZ Tfp pilus assembly protein PilZ [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=31.10 E-value=66 Score=22.43 Aligned_cols=60 Identities=17% Similarity=0.140 Sum_probs=40.8
Q ss_pred HHHHHHHhCCceEeCCCCCC--CHHHHHHHHHHHhhcCCccccceEEEecc-CCC-------------------ChhHHH
Q 029874 29 LIINAIKIGYRHIDCAADYR--NEAEVGEALAEAFSTGLVKREDLFITTKL-WNS-------------------DHGHVL 86 (186)
Q Consensus 29 ~l~~a~~~Gi~~~Dta~~Yg--~e~~vG~~l~~~~~~~~~~R~~~~i~tK~-~~~-------------------~~~~i~ 86 (186)
+-.-.+++|--|+-|-..|. .|..+--.|-+ ..+++++.+|+ |.. .-..++
T Consensus 25 aYMpfl~nGglFVpTnk~y~iG~evfl~l~lld-------~pekl~vagkVaWitP~gt~sr~~GiGv~f~d~e~g~~vr 97 (117)
T COG3215 25 AYMPFLENGGLFVPTNKVYSIGEEVFLLLELLD-------FPEKLPVAGKVAWITPVGTQSRPAGIGVQFTDGENGLKVR 97 (117)
T ss_pred HHhHHHhcCcEEcccCCccccchhhhhhhhhcC-------chhhccccceEEEEccCCCCCCCCceeeeccCCCchhhHH
Confidence 33444699999999999994 56655544433 34578888887 322 135789
Q ss_pred HHHHHHHHH
Q 029874 87 EACKDSLKK 95 (186)
Q Consensus 87 ~~~~~sl~~ 95 (186)
.++|..|..
T Consensus 98 ~~IE~~Lg~ 106 (117)
T COG3215 98 NQIETLLGG 106 (117)
T ss_pred HHHHHHHHh
Confidence 999988843
No 69
>PF01527 HTH_Tnp_1: Transposase; InterPro: IPR002514 Transposase proteins are necessary for efficient DNA transposition. This family consists of various Escherichia coli insertion elements and other bacterial transposases some of which are members of the IS3 family. This region includes a helix-turn-helix motif (HTH) at the N terminus followed by a leucine zipper (LZ) motif. The LZ motif has been shown to mediate oligomerisation of the transposase components in IS911 []. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated; PDB: 2JN6_A 2RN7_A.
Probab=30.86 E-value=15 Score=23.24 Aligned_cols=40 Identities=8% Similarity=-0.012 Sum_probs=33.7
Q ss_pred CchhHHHHHHHHHHhCCceEeCCCCCC-CHHHHHHHHHHHh
Q 029874 22 DESNIRDLIINAIKIGYRHIDCAADYR-NEAEVGEALAEAF 61 (186)
Q Consensus 22 ~~~~~~~~l~~a~~~Gi~~~Dta~~Yg-~e~~vG~~l~~~~ 61 (186)
+.+.-.++|..++..|.+.-+.|..|| +...+.+|++++.
T Consensus 8 s~e~K~~~v~~~~~~g~sv~~va~~~gi~~~~l~~W~~~~~ 48 (76)
T PF01527_consen 8 SPEFKLQAVREYLESGESVSEVAREYGISPSTLYNWRKQYR 48 (76)
T ss_dssp -HHHHHHHHHHHHHHHCHHHHHHHHHTS-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCceEeeecccccccccccHHHHHHh
Confidence 456667888999999999999999999 8999999999873
No 70
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=30.84 E-value=2.8e+02 Score=24.49 Aligned_cols=82 Identities=16% Similarity=0.232 Sum_probs=45.7
Q ss_pred CcCCccccccccCCchhHHHHHHHHHHhCCc--eEeCCCCCC-CHHHHHHHHHHHhhcCCccccceEEEeccCC-CChhH
Q 029874 9 FKMPIIGLGVWRMDESNIRDLIINAIKIGYR--HIDCAADYR-NEAEVGEALAEAFSTGLVKREDLFITTKLWN-SDHGH 84 (186)
Q Consensus 9 ~~v~~lglG~~~~~~~~~~~~l~~a~~~Gi~--~~Dta~~Yg-~e~~vG~~l~~~~~~~~~~R~~~~i~tK~~~-~~~~~ 84 (186)
+.||-.+.++-+-+-+.+.+.+.+|-+.++. .+|||.-.. .+..+-+..+=. ..+.++++.+..-... -+...
T Consensus 154 ~~v~~f~~~~~~~Pv~Iak~al~~ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik---~~~~P~E~llVvDam~GQdA~~ 230 (451)
T COG0541 154 VGVPFFGSGTEKDPVEIAKAALEKAKEEGYDVVIVDTAGRLHIDEELMDELKEIK---EVINPDETLLVVDAMIGQDAVN 230 (451)
T ss_pred cCCceecCCCCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccccHHHHHHHHHHH---hhcCCCeEEEEEecccchHHHH
Confidence 3455555544444556778888888888654 789998877 455555432211 1245566554433322 24455
Q ss_pred HHHHHHHHH
Q 029874 85 VLEACKDSL 93 (186)
Q Consensus 85 i~~~~~~sl 93 (186)
..++|.+.+
T Consensus 231 ~A~aF~e~l 239 (451)
T COG0541 231 TAKAFNEAL 239 (451)
T ss_pred HHHHHhhhc
Confidence 555555544
No 71
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=30.83 E-value=3.5e+02 Score=23.25 Aligned_cols=129 Identities=12% Similarity=0.066 Sum_probs=61.8
Q ss_pred HHHHHHHHHHhCCceEeCCCCCC------------CHHHHHHHHHHHhhcCCccccceEEEeccCCCChhHHHHHHHHHH
Q 029874 26 IRDLIINAIKIGYRHIDCAADYR------------NEAEVGEALAEAFSTGLVKREDLFITTKLWNSDHGHVLEACKDSL 93 (186)
Q Consensus 26 ~~~~l~~a~~~Gi~~~Dta~~Yg------------~e~~vG~~l~~~~~~~~~~R~~~~i~tK~~~~~~~~i~~~~~~sl 93 (186)
..+.++...++|+|.+...---+ +...+-++++.+.+.| +..=.+.+..=+...+.+++++.++..+
T Consensus 114 t~e~l~~l~~~GvnrislGvQS~~d~~L~~l~R~~~~~~~~~ai~~l~~~G-~~~v~~dlI~GlPgqt~e~~~~tl~~~~ 192 (400)
T PRK07379 114 DLEQLQGYRSLGVNRVSLGVQAFQDELLALCGRSHRVKDIFAAVDLIHQAG-IENFSLDLISGLPHQTLEDWQASLEAAI 192 (400)
T ss_pred CHHHHHHHHHCCCCEEEEEcccCCHHHHHHhCCCCCHHHHHHHHHHHHHcC-CCeEEEEeecCCCCCCHHHHHHHHHHHH
Confidence 34556666677888775433222 2333444454432223 1111122222223336667777666555
Q ss_pred HHhCCCcccEEEEec-CCCCCCCCCCCCCCCCCCCCcccccccccHHHHH-HHHHHHHHcCCccEEEecCCCch
Q 029874 94 KKLQLDYLDLYLVHF-PVATKHTGVGTTDSALDADGVLEIDTTISLETTW-HAMEDLVSMGLVRSIGIRYVGIL 165 (186)
Q Consensus 94 ~~Lg~~~lDl~~lH~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~l~~~G~ir~iGvsn~~~~ 165 (186)
+|+.+++.++.+.- |.+... ..-..+....+......+.+ .+.+.|.+.|- .++++|||..+
T Consensus 193 -~l~p~~is~y~L~~~pgT~l~--------~~~~~g~~~~~~~~~~~~~~~~~~~~L~~~Gy-~~yeisnfa~~ 256 (400)
T PRK07379 193 -ALNPTHLSCYDLVLEPGTAFG--------KQYQPGKAPLPSDETTAAMYRLAQEILTQAGY-EHYEISNYAKP 256 (400)
T ss_pred -cCCCCEEEEecceecCCchhH--------HHhhcCCCCCCCHHHHHHHHHHHHHHHHHcCC-ceeeeeheECC
Confidence 47888888887663 222110 00000011111111122233 45666777886 56899999864
No 72
>smart00148 PLCXc Phospholipase C, catalytic domain (part); domain X. Phosphoinositide-specific phospholipases C. These enzymes contain 2 regions (X and Y) which together form a TIM barrel-like structure containing the active site residues. Phospholipase C enzymes (PI-PLC) act as signal transducers that generate two second messengers, inositol-1,4,5-trisphosphate and diacylglycerol. The bacterial enzyme [6] appears to be a homologue of the mammalian PLCs.
Probab=30.62 E-value=2e+02 Score=20.55 Aligned_cols=68 Identities=15% Similarity=0.102 Sum_probs=38.3
Q ss_pred hHHHHHHHHHHhCCceEeCCCCC----------C-------CHHHHHHHHHHHhhcCCccccceEEEeccCCC--ChhHH
Q 029874 25 NIRDLIINAIKIGYRHIDCAADY----------R-------NEAEVGEALAEAFSTGLVKREDLFITTKLWNS--DHGHV 85 (186)
Q Consensus 25 ~~~~~l~~a~~~Gi~~~Dta~~Y----------g-------~e~~vG~~l~~~~~~~~~~R~~~~i~tK~~~~--~~~~i 85 (186)
.....+..+++.|+|+||.=-.+ | .-..+=+.++++.... +.+-|++..|-... ....+
T Consensus 29 ~q~~~i~~qL~~GvR~~dirv~~~~~~~~~v~Hg~~~~~~~~~~dvL~~i~~fl~~~--p~e~VIl~l~~~~~~~~~~~l 106 (135)
T smart00148 29 SSVEGYIQALDHGCRCVELDCWDGPDGEPVIYHGHTFTLPIKLSEVLEAIKDFAFVT--SPYPVILSLENHCSPDQQAKM 106 (135)
T ss_pred ccHHHHHHHHHhCCCEEEEEcccCCCCCEEEEECCcccccEEHHHHHHHHHHHHHhC--CCCcEEEeehhhCCHHHHHHH
Confidence 34678899999999999832111 1 1233333344444444 66667777776543 22345
Q ss_pred HHHHHHHHH
Q 029874 86 LEACKDSLK 94 (186)
Q Consensus 86 ~~~~~~sl~ 94 (186)
.+.+++.|.
T Consensus 107 ~~~l~~~~g 115 (135)
T smart00148 107 AQMFKEIFG 115 (135)
T ss_pred HHHHHHHHh
Confidence 555555553
No 73
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=29.70 E-value=3.8e+02 Score=23.38 Aligned_cols=128 Identities=13% Similarity=0.122 Sum_probs=63.1
Q ss_pred HHHHHHHHHhCCceEeCCCCCC------------CHHHHHHHHHHHhhcCCccccceEEEeccCCCChhHHHHHHHHHHH
Q 029874 27 RDLIINAIKIGYRHIDCAADYR------------NEAEVGEALAEAFSTGLVKREDLFITTKLWNSDHGHVLEACKDSLK 94 (186)
Q Consensus 27 ~~~l~~a~~~Gi~~~Dta~~Yg------------~e~~vG~~l~~~~~~~~~~R~~~~i~tK~~~~~~~~i~~~~~~sl~ 94 (186)
.+.++...++|+|.+-.+-.-. +...+-++++.+.+.| +..-.+-+..=+...+.+.+.+.++..++
T Consensus 151 ~e~l~~lk~~G~~risiGvqS~~~~~l~~l~r~~~~~~~~~ai~~l~~~G-~~~v~~dli~GlPgqt~e~~~~tl~~~~~ 229 (455)
T TIGR00538 151 KDVIDALRDEGFNRLSFGVQDFNKEVQQAVNRIQPEEMIFELMNHAREAG-FTSINIDLIYGLPKQTKESFAKTLEKVAE 229 (455)
T ss_pred HHHHHHHHHcCCCEEEEcCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhcC-CCcEEEeEEeeCCCCCHHHHHHHHHHHHh
Confidence 4556666667888774332111 3334445555543334 11112223333344477778777775554
Q ss_pred HhCCCcccEEEE-ecCCCCCCCCCCCCCCCCCCCCcccccccccHHHHHH-HHHHHHHcCCccEEEecCCCchh
Q 029874 95 KLQLDYLDLYLV-HFPVATKHTGVGTTDSALDADGVLEIDTTISLETTWH-AMEDLVSMGLVRSIGIRYVGILN 166 (186)
Q Consensus 95 ~Lg~~~lDl~~l-H~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~l~~~G~ir~iGvsn~~~~~ 166 (186)
++.+++.++.+ +.|..... +... . ....+......+.++ +.+.|.+.| ...++++||..+.
T Consensus 230 -l~~~~is~y~L~~~p~~~~~---~~~~---~---~~~~~~~e~~~~~~~~~~~~L~~~G-y~~~~~~~fa~~~ 292 (455)
T TIGR00538 230 -LNPDRLAVFNYAHVPWVKPA---QRKI---P---EAALPSAEEKLDILQETIAFLTEAG-YQFIGMDHFAKPD 292 (455)
T ss_pred -cCCCEEEEecCccccchhHH---Hhcc---c---ccCCCCHHHHHHHHHHHHHHHHHCC-CEEEeccceeCCC
Confidence 88898888866 23321100 0000 0 000111111222333 444555667 4789999999654
No 74
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=29.61 E-value=99 Score=24.29 Aligned_cols=87 Identities=14% Similarity=0.156 Sum_probs=46.9
Q ss_pred HHHHHHhCCc-----eEeCCCCCCCHHHHHHHHHHHhhcCCccccceEEEeccCCCChhHHHHHHHHHHHHhCCCcccEE
Q 029874 30 IINAIKIGYR-----HIDCAADYRNEAEVGEALAEAFSTGLVKREDLFITTKLWNSDHGHVLEACKDSLKKLQLDYLDLY 104 (186)
Q Consensus 30 l~~a~~~Gi~-----~~Dta~~Yg~e~~vG~~l~~~~~~~~~~R~~~~i~tK~~~~~~~~i~~~~~~sl~~Lg~~~lDl~ 104 (186)
+..|.++|.. |...|+-|-+.....+..+.. +. +....=+-+.+.+.+ .+.++.+ .+|.+
T Consensus 15 a~~a~~~gad~iG~If~~~SpR~Vs~~~a~~i~~~v------~~--~~~VgVf~n~~~~~i----~~i~~~~---~ld~V 79 (208)
T COG0135 15 AKAAAKAGADYIGFIFVPKSPRYVSPEQAREIASAV------PK--VKVVGVFVNESIEEI----LEIAEEL---GLDAV 79 (208)
T ss_pred HHHHHHcCCCEEEEEEcCCCCCcCCHHHHHHHHHhC------CC--CCEEEEECCCCHHHH----HHHHHhc---CCCEE
Confidence 3445555444 445577776666666666552 32 111111122243333 3333444 58999
Q ss_pred EEecCCCCCCCCCCCCCCCCCCCCcccccccccHHHHHHHHHHHHH---cCCccEEEecC
Q 029874 105 LVHFPVATKHTGVGTTDSALDADGVLEIDTTISLETTWHAMEDLVS---MGLVRSIGIRY 161 (186)
Q Consensus 105 ~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~---~G~ir~iGvsn 161 (186)
|+|.+.. .+.++++++ -..+|++.++.
T Consensus 80 QlHG~e~------------------------------~~~~~~l~~~~~~~v~kai~v~~ 109 (208)
T COG0135 80 QLHGDED------------------------------PEYIDQLKEELGVPVIKAISVSE 109 (208)
T ss_pred EECCCCC------------------------------HHHHHHHHhhcCCceEEEEEeCC
Confidence 9997532 344455555 45789999985
No 75
>PLN02389 biotin synthase
Probab=29.44 E-value=3.7e+02 Score=23.10 Aligned_cols=105 Identities=15% Similarity=0.111 Sum_probs=56.8
Q ss_pred CCchhHHHHHHHHHHhCCceEeCCC----CCC---CHHHHHHHHHHHhhcCCccccceEEEeccCCCChhHHHHHHHHHH
Q 029874 21 MDESNIRDLIINAIKIGYRHIDCAA----DYR---NEAEVGEALAEAFSTGLVKREDLFITTKLWNSDHGHVLEACKDSL 93 (186)
Q Consensus 21 ~~~~~~~~~l~~a~~~Gi~~~Dta~----~Yg---~e~~vG~~l~~~~~~~~~~R~~~~i~tK~~~~~~~~i~~~~~~sl 93 (186)
++.++..+.++.+.+.|++.|-... ..+ .-..+-+.++.. +...+.+.......+.+ .-..|
T Consensus 116 Ls~EeIl~~a~~~~~~G~~~~~ivts~rg~~~e~~~~e~i~eiir~i------k~~~l~i~~s~G~l~~E-----~l~~L 184 (379)
T PLN02389 116 MSKDDVLEAAKRAKEAGSTRFCMGAAWRDTVGRKTNFNQILEYVKEI------RGMGMEVCCTLGMLEKE-----QAAQL 184 (379)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEecccCCCCChhHHHHHHHHHHHH------hcCCcEEEECCCCCCHH-----HHHHH
Confidence 4677888888888899999885421 111 134566666664 22234444333332333 33345
Q ss_pred HHhCCCcccEEEEecCCCCCCCCCCCCCCCCCCCCcccccccccHHHHHHHHHHHHHcCC
Q 029874 94 KKLQLDYLDLYLVHFPVATKHTGVGTTDSALDADGVLEIDTTISLETTWHAMEDLVSMGL 153 (186)
Q Consensus 94 ~~Lg~~~lDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ 153 (186)
+..|++++-+ ..+.... .....-...+.++.++.++.+++.|.
T Consensus 185 keAGld~~~~----~LeTs~~-------------~y~~i~~~~s~e~rl~ti~~a~~~Gi 227 (379)
T PLN02389 185 KEAGLTAYNH----NLDTSRE-------------YYPNVITTRSYDDRLETLEAVREAGI 227 (379)
T ss_pred HHcCCCEEEe----eecCChH-------------HhCCcCCCCCHHHHHHHHHHHHHcCC
Confidence 5667765422 2221100 00001112357889999999999985
No 76
>COG1880 CdhB CO dehydrogenase/acetyl-CoA synthase epsilon subunit [Energy production and conversion]
Probab=29.19 E-value=2.5e+02 Score=21.19 Aligned_cols=37 Identities=16% Similarity=0.190 Sum_probs=25.3
Q ss_pred CccccccccCCchhHHHHHHHHHHhCCceEeCCCCCC
Q 029874 12 PIIGLGVWRMDESNIRDLIINAIKIGYRHIDCAADYR 48 (186)
Q Consensus 12 ~~lglG~~~~~~~~~~~~l~~a~~~Gi~~~Dta~~Yg 48 (186)
|-+..|.-.++++..+.+++.+-+.-+..+-||+.++
T Consensus 38 PLlivGp~~~dee~~E~~vKi~ekfnipivaTa~~~~ 74 (170)
T COG1880 38 PLLIVGPLALDEELLELAVKIIEKFNIPIVATASSMG 74 (170)
T ss_pred ceEEecccccCHHHHHHHHHHHHhcCCceEecchhhc
Confidence 5566777666555555555555555699999999987
No 77
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=28.96 E-value=3.2e+02 Score=22.20 Aligned_cols=36 Identities=17% Similarity=0.181 Sum_probs=27.3
Q ss_pred ecCCCCcCCccccccccCCchhHHHHHHHHHHhCCceEeCC
Q 029874 4 TLNNGFKMPIIGLGVWRMDESNIRDLIINAIKIGYRHIDCA 44 (186)
Q Consensus 4 ~~~tg~~v~~lglG~~~~~~~~~~~~l~~a~~~Gi~~~Dta 44 (186)
.+|.|.+-+...|.+ ++..++.+.-.+.|++.|+..
T Consensus 5 TlRDG~Q~~~~~~s~-----e~K~~i~~~L~~~Gv~~IEvG 40 (274)
T cd07938 5 GPRDGLQNEKTFIPT-----EDKIELIDALSAAGLRRIEVT 40 (274)
T ss_pred CCCCCCcCCCCCcCH-----HHHHHHHHHHHHcCCCEEEeC
Confidence 357777766665544 667778888889999999987
No 78
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=28.95 E-value=3.1e+02 Score=22.16 Aligned_cols=143 Identities=12% Similarity=0.087 Sum_probs=73.6
Q ss_pred CchhHHHHHHHHHHhCCceEeC---C-------CCCC-CHHHHHHHHHHHhhcCCcccc-ceEEEeccCCCChhHHHHHH
Q 029874 22 DESNIRDLIINAIKIGYRHIDC---A-------ADYR-NEAEVGEALAEAFSTGLVKRE-DLFITTKLWNSDHGHVLEAC 89 (186)
Q Consensus 22 ~~~~~~~~l~~a~~~Gi~~~Dt---a-------~~Yg-~e~~vG~~l~~~~~~~~~~R~-~~~i~tK~~~~~~~~i~~~~ 89 (186)
..++..++.+.+.++|+..||. + ..|+ +...+-+.++.. .+. ++-|..|+.+.. +.+. .+
T Consensus 100 ~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~v------r~~~~~Pv~vKl~~~~-~~~~-~~ 171 (296)
T cd04740 100 TVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAV------KKATDVPVIVKLTPNV-TDIV-EI 171 (296)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHH------HhccCCCEEEEeCCCc-hhHH-HH
Confidence 4566677788888889998875 1 2233 455555556553 222 577888875432 2222 23
Q ss_pred HHHHHHhCCCcccEEEEecCCCCCCCCCCCCCCCC--CCCCcccccccccHHHHHHHHHHHHHcCCccEEEecCCCchhH
Q 029874 90 KDSLKKLQLDYLDLYLVHFPVATKHTGVGTTDSAL--DADGVLEIDTTISLETTWHAMEDLVSMGLVRSIGIRYVGILNP 167 (186)
Q Consensus 90 ~~sl~~Lg~~~lDl~~lH~p~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvsn~~~~~l 167 (186)
-+.+.+.|.|.+++. +-....... .....+. ...+...-+.. ..-.++.+.++++.=.+.-||.......+-
T Consensus 172 a~~~~~~G~d~i~~~---nt~~g~~~~-~~~~~~~~~~~~gg~sg~~~--~~~~~~~i~~i~~~~~ipii~~GGI~~~~d 245 (296)
T cd04740 172 ARAAEEAGADGLTLI---NTLKGMAID-IETRKPILGNVTGGLSGPAI--KPIALRMVYQVYKAVEIPIIGVGGIASGED 245 (296)
T ss_pred HHHHHHcCCCEEEEE---CCCcccccc-cccCceeecCCcceecCccc--chHHHHHHHHHHHhcCCCEEEECCCCCHHH
Confidence 345667787666442 110000000 0000000 00000000000 112567777777765688999998876665
Q ss_pred hhHHhhccCCCC
Q 029874 168 CEHSIRSSKFST 179 (186)
Q Consensus 168 ~~~~~~~~~~~~ 179 (186)
+..++..| -|.
T Consensus 246 a~~~l~~G-Ad~ 256 (296)
T cd04740 246 ALEFLMAG-ASA 256 (296)
T ss_pred HHHHHHcC-CCE
Confidence 77777777 453
No 79
>PF01904 DUF72: Protein of unknown function DUF72; InterPro: IPR002763 The function of this family is unknown. Aquifex aeolicus has two copies of this protein. A probable aspartyl-tRNA synthetase from Escherichia coli [] belongs to this group.; PDB: 1VPY_A 1ZTV_A 1VPQ_A.
Probab=28.62 E-value=1.9e+02 Score=22.79 Aligned_cols=66 Identities=17% Similarity=0.238 Sum_probs=42.2
Q ss_pred CceEeC-CCCCC--CHHHHHHHHHHHhhcCCccccceEEEeccCCC---------ChhHHHHHHHHHHHHhCCCcccEEE
Q 029874 38 YRHIDC-AADYR--NEAEVGEALAEAFSTGLVKREDLFITTKLWNS---------DHGHVLEACKDSLKKLQLDYLDLYL 105 (186)
Q Consensus 38 i~~~Dt-a~~Yg--~e~~vG~~l~~~~~~~~~~R~~~~i~tK~~~~---------~~~~i~~~~~~sl~~Lg~~~lDl~~ 105 (186)
.+.++. +..|+ +...+.++.++ .++++..+.|++.. ..+.+.+.+.+.++.|| +.+.+++
T Consensus 19 F~~VEvn~TFY~~P~~~t~~~W~~~-------~p~~F~F~vK~~~~iTH~~~l~~~~~~~~~~F~~~~~~L~-~klg~iL 90 (230)
T PF01904_consen 19 FNTVEVNSTFYRIPSPETVARWREQ-------TPEGFRFSVKAPQLITHERRLRDCAEELWRRFLEALEPLG-EKLGPIL 90 (230)
T ss_dssp -SEEEE-HHCCSSS-HHHHHHHHCT-------S-TT-EEEEE--CCCCCCCHCGSSHHHHHHHHHHHCHHHH-T-EEEEE
T ss_pred CCeEEECcccCCCCCHHHHHHHHhh-------CCCCeEEEEeccHHheecccccccHHHHHHHHHHHHHHHh-hcceEEE
Confidence 555554 56787 68888888776 55789999998643 23455466666999998 8999999
Q ss_pred EecCCC
Q 029874 106 VHFPVA 111 (186)
Q Consensus 106 lH~p~~ 111 (186)
+-.|-.
T Consensus 91 ~Q~Pps 96 (230)
T PF01904_consen 91 FQFPPS 96 (230)
T ss_dssp EE--TT
T ss_pred EEcCCC
Confidence 998754
No 80
>KOG3206 consensus Alpha-tubulin folding cofactor B [Posttranslational modification, protein turnover, chaperones]
Probab=28.60 E-value=29 Score=27.29 Aligned_cols=16 Identities=31% Similarity=0.549 Sum_probs=13.5
Q ss_pred HHhCCceEeCCCCCCC
Q 029874 34 IKIGYRHIDCAADYRN 49 (186)
Q Consensus 34 ~~~Gi~~~Dta~~Yg~ 49 (186)
.-+|.++|++++.||.
T Consensus 197 sv~G~ryF~c~p~yGg 212 (234)
T KOG3206|consen 197 SVNGKRYFECAPKYGG 212 (234)
T ss_pred cccceEeeecCCccCC
Confidence 4469999999999973
No 81
>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=28.38 E-value=3.4e+02 Score=22.38 Aligned_cols=122 Identities=17% Similarity=0.131 Sum_probs=71.8
Q ss_pred HHHHHHHHHhCCceEeCCCCCCCHHHHHHHHHHHhhcCCccccceEEEeccCCCChhHHHHHHHHHHHHhCCCcccEEEE
Q 029874 27 RDLIINAIKIGYRHIDCAADYRNEAEVGEALAEAFSTGLVKREDLFITTKLWNSDHGHVLEACKDSLKKLQLDYLDLYLV 106 (186)
Q Consensus 27 ~~~l~~a~~~Gi~~~Dta~~Yg~e~~vG~~l~~~~~~~~~~R~~~~i~tK~~~~~~~~i~~~~~~sl~~Lg~~~lDl~~l 106 (186)
+++-..-...|.+.+=++..-.-.+.+.+-+++. + +.+ =++..++--.+.+.+.+.+++..+.+| .+|++.
T Consensus 26 ~~lA~~la~~G~~l~lvar~~rrl~~v~~~l~~~---~--~~~-~v~~~~~Dvs~~~~~~~~~~~~~~~fg--~vDvLV- 96 (282)
T KOG1205|consen 26 EALAYELAKRGAKLVLVARRARRLERVAEELRKL---G--SLE-KVLVLQLDVSDEESVKKFVEWAIRHFG--RVDVLV- 96 (282)
T ss_pred HHHHHHHHhCCCceEEeehhhhhHHHHHHHHHHh---C--CcC-ccEEEeCccCCHHHHHHHHHHHHHhcC--CCCEEE-
Confidence 4444555678998887776665677777777765 3 444 233445555588999999999999997 799886
Q ss_pred ecCCCCCCCCCCCCCCCCCCCCcccccccccHHHHHHHHHHHHHc--CCccEEE
Q 029874 107 HFPVATKHTGVGTTDSALDADGVLEIDTTISLETTWHAMEDLVSM--GLVRSIG 158 (186)
Q Consensus 107 H~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--G~ir~iG 158 (186)
++..-.... ..++....+....++.+....+.=+-.+|-.|++. |.|-.|+
T Consensus 97 NNAG~~~~~-~~~~~~~~~~~~~mdtN~~G~V~~Tk~alp~m~~r~~GhIVvis 149 (282)
T KOG1205|consen 97 NNAGISLVG-FLEDTDIEDVRNVMDTNVFGTVYLTKAALPSMKKRNDGHIVVIS 149 (282)
T ss_pred ecCcccccc-ccccCcHHHHHHHhhhhchhhHHHHHHHHHHhhhcCCCeEEEEe
Confidence 433222110 00000011112223334444455566778888887 6766554
No 82
>PF11181 YflT: Heat induced stress protein YflT
Probab=28.26 E-value=1e+02 Score=20.98 Aligned_cols=29 Identities=31% Similarity=0.552 Sum_probs=24.2
Q ss_pred CCCHHHHHHHHHHHhhcCCccccceEEEec
Q 029874 47 YRNEAEVGEALAEAFSTGLVKREDLFITTK 76 (186)
Q Consensus 47 Yg~e~~vG~~l~~~~~~~~~~R~~~~i~tK 76 (186)
|.++..+-.++.++..+| ...++|+|.+|
T Consensus 6 ~~~~~E~~~~I~~L~~~G-y~~ddI~Vva~ 34 (103)
T PF11181_consen 6 YDNEEEALSAIEELKAQG-YSEDDIYVVAK 34 (103)
T ss_pred ECCHHHHHHHHHHHHHcC-CCcccEEEEEc
Confidence 447888888888888888 77889999987
No 83
>KOG1579 consensus Homocysteine S-methyltransferase [Amino acid transport and metabolism]
Probab=27.33 E-value=3.8e+02 Score=22.57 Aligned_cols=86 Identities=13% Similarity=0.106 Sum_probs=50.8
Q ss_pred chhHHHHHHHHHHhCCceEeCCCCCCCHH---------HHHHHHHHHhhcCCccccceE-----EEeccCCC--------
Q 029874 23 ESNIRDLIINAIKIGYRHIDCAADYRNEA---------EVGEALAEAFSTGLVKREDLF-----ITTKLWNS-------- 80 (186)
Q Consensus 23 ~~~~~~~l~~a~~~Gi~~~Dta~~Yg~e~---------~vG~~l~~~~~~~~~~R~~~~-----i~tK~~~~-------- 80 (186)
++...++=+..+++|.+.+-|...+.+.. ..-+..+..++--...|+.+. |.--+.+.
T Consensus 52 Pe~V~~~H~efL~aGadIi~T~Tyqas~~~~~~~~~~~~~~el~~~s~~~a~~Are~~~~~~~~v~gsiGp~~A~l~~g~ 131 (317)
T KOG1579|consen 52 PEAVEQVHKEFLRAGADIISTNTYQASSDGFEEYVEEEELIELYEKSVELADLARERLGEETGYVAGSIGPYGATLADGS 131 (317)
T ss_pred hHHHHHHHHHHHHccCcEEEEeeeeecchHHhhhhhhHHHHHHHHHHHHHHHHHHHHhccccceeeeecccccceecCCc
Confidence 45567777788999999999877665211 111122211110001333333 22222111
Q ss_pred ----------ChhHHHHHHHHHHHHhCCCcccEEEEec
Q 029874 81 ----------DHGHVLEACKDSLKKLQLDYLDLYLVHF 108 (186)
Q Consensus 81 ----------~~~~i~~~~~~sl~~Lg~~~lDl~~lH~ 108 (186)
+.+.+.+..+..|+.+.-..+|++.+-.
T Consensus 132 eytg~Y~~~~~~~el~~~~k~qle~~~~~gvD~L~fET 169 (317)
T KOG1579|consen 132 EYTGIYGDNVEFEELYDFFKQQLEVFLEAGVDLLAFET 169 (317)
T ss_pred ccccccccccCHHHHHHHHHHHHHHHHhCCCCEEEEee
Confidence 4577889999999999777799998875
No 84
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=26.52 E-value=4e+02 Score=22.55 Aligned_cols=75 Identities=11% Similarity=-0.056 Sum_probs=50.8
Q ss_pred CCCChhHHHHHHHHHHHHhCCCcccEEEEecCCCCCCCCCCCCCCCCCCCCcccccccccHHHHHHHHHHHHHcCCccEE
Q 029874 78 WNSDHGHVLEACKDSLKKLQLDYLDLYLVHFPVATKHTGVGTTDSALDADGVLEIDTTISLETTWHAMEDLVSMGLVRSI 157 (186)
Q Consensus 78 ~~~~~~~i~~~~~~sl~~Lg~~~lDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~i 157 (186)
...+.+...+..+-+.+..+++++-+=.+..+... ..+..+++++.++|+++|..-.+
T Consensus 145 g~~ta~eAv~~a~lare~~~~~~iKlEvi~e~~~l----------------------lpd~~~~v~aa~~L~~~Gf~v~~ 202 (326)
T PRK11840 145 GCYTAEEAVRTLRLAREAGGWDLVKLEVLGDAKTL----------------------YPDMVETLKATEILVKEGFQVMV 202 (326)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCeEEEEEcCCCCCc----------------------ccCHHHHHHHHHHHHHCCCEEEE
Confidence 34466777777777778888888877666543222 12367899999999999986533
Q ss_pred EecCCCchhHhhHHhhccC
Q 029874 158 GIRYVGILNPCEHSIRSSK 176 (186)
Q Consensus 158 Gvsn~~~~~l~~~~~~~~~ 176 (186)
+|+ +....++++.+.|.
T Consensus 203 -yc~-~d~~~a~~l~~~g~ 219 (326)
T PRK11840 203 -YCS-DDPIAAKRLEDAGA 219 (326)
T ss_pred -EeC-CCHHHHHHHHhcCC
Confidence 444 34445788777766
No 85
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=26.05 E-value=3.8e+02 Score=22.22 Aligned_cols=103 Identities=13% Similarity=0.055 Sum_probs=60.6
Q ss_pred hhHHHHHHHHHHh-CCceEeCCCCC---CCHHHHHHHHHHHhhcCCccccceEEEeccCCCChhHHHHHHHHHHHHhCCC
Q 029874 24 SNIRDLIINAIKI-GYRHIDCAADY---RNEAEVGEALAEAFSTGLVKREDLFITTKLWNSDHGHVLEACKDSLKKLQLD 99 (186)
Q Consensus 24 ~~~~~~l~~a~~~-Gi~~~Dta~~Y---g~e~~vG~~l~~~~~~~~~~R~~~~i~tK~~~~~~~~i~~~~~~sl~~Lg~~ 99 (186)
++..+++.+.-+. |++-+--+.+- .+...+.+.++.+.+.+ ..+.+.+.|+.....+..+.+.+-+.|++.|..
T Consensus 122 ~e~~~~i~~i~~~~~I~~VilSGGDPl~~~~~~L~~ll~~l~~i~--~v~~iri~Tr~~v~~p~rit~ell~~L~~~g~~ 199 (321)
T TIGR03822 122 AELDAAFAYIADHPEIWEVILTGGDPLVLSPRRLGDIMARLAAID--HVKIVRFHTRVPVADPARVTPALIAALKTSGKT 199 (321)
T ss_pred HHHHHHHHHHHhCCCccEEEEeCCCcccCCHHHHHHHHHHHHhCC--CccEEEEeCCCcccChhhcCHHHHHHHHHcCCc
Confidence 4555666655444 88755332221 13455666665542223 223456778775555666666777777777743
Q ss_pred cccEEEEecCCCCCCCCCCCCCCCCCCCCcccccccccHHHHHHHHHHHHHcCC
Q 029874 100 YLDLYLVHFPVATKHTGVGTTDSALDADGVLEIDTTISLETTWHAMEDLVSMGL 153 (186)
Q Consensus 100 ~lDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ 153 (186)
..+.+|..+.. +-..++.++++.|++.|.
T Consensus 200 --v~i~l~~~h~~-----------------------el~~~~~~ai~~L~~~Gi 228 (321)
T TIGR03822 200 --VYVALHANHAR-----------------------ELTAEARAACARLIDAGI 228 (321)
T ss_pred --EEEEecCCChh-----------------------hcCHHHHHHHHHHHHcCC
Confidence 34677764221 013679999999999996
No 86
>PLN02881 tetrahydrofolylpolyglutamate synthase
Probab=25.89 E-value=3.8e+02 Score=24.24 Aligned_cols=102 Identities=11% Similarity=0.090 Sum_probs=57.5
Q ss_pred eEeCCCCCCCHHHHHHHHHHHhhcCC----------------------ccccceEEEeccCCCChhHHHHHHHHHHHHhC
Q 029874 40 HIDCAADYRNEAEVGEALAEAFSTGL----------------------VKREDLFITTKLWNSDHGHVLEACKDSLKKLQ 97 (186)
Q Consensus 40 ~~Dta~~Yg~e~~vG~~l~~~~~~~~----------------------~~R~~~~i~tK~~~~~~~~i~~~~~~sl~~Lg 97 (186)
++|.|++..+-..+.++++....... -.+..+.|.......++..+.+.+...+.+-+
T Consensus 332 ~LDGAHNp~s~~~l~~wf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvF~~~~dkD~~~lL~~L~~~~~~~~ 411 (530)
T PLN02881 332 YLDGAHSPESMEACARWFSSAIKGDEQSPGSGYGPHGGGGKSEDTESNKISEQILLFNCMSVRDPQLLLPPLANTCASNG 411 (530)
T ss_pred EEECCCCHHHHHHHHHHHHHHhcccccCCcccccccccccccccccccCCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcC
Confidence 66888777777788888876532110 11234556666666688889998888887666
Q ss_pred CCcccEEEEe-cCCCCCCCCCCCCCCCCCCCCcccccccccHHHHHHHHH
Q 029874 98 LDYLDLYLVH-FPVATKHTGVGTTDSALDADGVLEIDTTISLETTWHAME 146 (186)
Q Consensus 98 ~~~lDl~~lH-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 146 (186)
+ ++|-.++= ++...... +.. ....+....+.+...+.+.|+.|.
T Consensus 412 ~-~f~~aiF~~n~~~~~~~--~~~--~~~~~~~~~l~~q~~l~~~W~~l~ 456 (530)
T PLN02881 412 V-PFKKALFVPNISVYNKV--GSG--LPVDDPQVDLSWQFTLQRVWESLI 456 (530)
T ss_pred C-CCCeEEEcCCccccCCC--ccc--CCCcchhhhHHHHHHHHHHHHHhc
Confidence 3 45655443 22222110 000 111122233455566778887774
No 87
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=25.57 E-value=4.8e+02 Score=23.24 Aligned_cols=61 Identities=8% Similarity=0.003 Sum_probs=38.1
Q ss_pred CCCHHHHHHHHHHHhhcCCccccceEEEeccCCCChhHHHHHHHHHHHHhCCCcccEEEEecCCCC
Q 029874 47 YRNEAEVGEALAEAFSTGLVKREDLFITTKLWNSDHGHVLEACKDSLKKLQLDYLDLYLVHFPVAT 112 (186)
Q Consensus 47 Yg~e~~vG~~l~~~~~~~~~~R~~~~i~tK~~~~~~~~i~~~~~~sl~~Lg~~~lDl~~lH~p~~~ 112 (186)
+|++..+-++|++..++. +.+-++|.+-+. ++-|-+.++...++++...++++.++.|+..
T Consensus 67 ~G~~~~L~~aI~~~~~~~--~P~~I~V~sTC~---selIGdDi~~~~~~~~~~~~pvi~v~t~gf~ 127 (511)
T TIGR01278 67 RGSQTRLVDTVRRVDDRF--KPDLIVVTPSCT---SSLLQEDLGNLAAAAGLDKSKVIVADVNAYR 127 (511)
T ss_pred cchHHHHHHHHHHHHHhc--CCCEEEEeCCCh---HHHhccCHHHHHHHhccCCCcEEEecCCCcc
Confidence 678888888888875543 444455655442 3333344444445555446889999988765
No 88
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=25.54 E-value=4.4e+02 Score=23.27 Aligned_cols=39 Identities=18% Similarity=0.198 Sum_probs=25.3
Q ss_pred CchhHHHHHHHHHHhCCce---EeCCCCCCCHHHHHHHHHHH
Q 029874 22 DESNIRDLIINAIKIGYRH---IDCAADYRNEAEVGEALAEA 60 (186)
Q Consensus 22 ~~~~~~~~l~~a~~~Gi~~---~Dta~~Yg~e~~vG~~l~~~ 60 (186)
+.+.....++.|.++|+.. ||.-.+-.|-..-+++.+..
T Consensus 96 aDDvVe~Fv~ka~~nGidvfRiFDAlND~RNl~~ai~a~kk~ 137 (472)
T COG5016 96 ADDVVEKFVEKAAENGIDVFRIFDALNDVRNLKTAIKAAKKH 137 (472)
T ss_pred chHHHHHHHHHHHhcCCcEEEechhccchhHHHHHHHHHHhc
Confidence 5667788999999999874 45444444544445555543
No 89
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=25.51 E-value=4.6e+02 Score=22.92 Aligned_cols=124 Identities=18% Similarity=0.102 Sum_probs=61.5
Q ss_pred HHHHHHHHHhCCceEeCCCCCC------------CHHHHHHHHHHHhhcCCccccceEEEecc----CCCChhHHHHHHH
Q 029874 27 RDLIINAIKIGYRHIDCAADYR------------NEAEVGEALAEAFSTGLVKREDLFITTKL----WNSDHGHVLEACK 90 (186)
Q Consensus 27 ~~~l~~a~~~Gi~~~Dta~~Yg------------~e~~vG~~l~~~~~~~~~~R~~~~i~tK~----~~~~~~~i~~~~~ 90 (186)
.+.+....++|+|.|...---. +...+-++++.+.+.| . ..|..-+ ...+.+.+++.++
T Consensus 163 ~e~l~~l~~aGvnRiSiGVQSf~d~vLk~lgR~~~~~~~~~~i~~l~~~g---~--~~v~~DlI~GlPgqT~e~~~~~l~ 237 (449)
T PRK09058 163 DEKADAALDAGANRFSIGVQSFNTQVRRRAGRKDDREEVLARLEELVARD---R--AAVVCDLIFGLPGQTPEIWQQDLA 237 (449)
T ss_pred HHHHHHHHHcCCCEEEecCCcCCHHHHHHhCCCCCHHHHHHHHHHHHhCC---C--CcEEEEEEeeCCCCCHHHHHHHHH
Confidence 4566666778999885432221 2333334444431112 1 1222222 2235677777766
Q ss_pred HHHHHhCCCcccEEEEec-CCCCCCCCCCCCCCCCCCCCccccc-c-cccHHHHHHHHHHHHHcCCccEEEecCCCch
Q 029874 91 DSLKKLQLDYLDLYLVHF-PVATKHTGVGTTDSALDADGVLEID-T-TISLETTWHAMEDLVSMGLVRSIGIRYVGIL 165 (186)
Q Consensus 91 ~sl~~Lg~~~lDl~~lH~-p~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~l~~l~~~G~ir~iGvsn~~~~ 165 (186)
..+ +++.+++++|.+.- |..... ..-..+....+ + .....-.-.+.+.|.+.|- +.+++|||..+
T Consensus 238 ~~~-~l~~~~is~y~L~~~pgT~l~--------~~~~~g~l~~~~~~~~~~~my~~~~~~L~~~Gy-~~yeis~far~ 305 (449)
T PRK09058 238 IVR-DLGLDGVDLYALNLLPGTPLA--------KAVEKGKLPPPATPAERADMYAYGVEFLAKAGW-RQLSNSHWART 305 (449)
T ss_pred HHH-hcCCCEEEEeccccCCCCHHH--------HHHHcCCCCCCCCHHHHHHHHHHHHHHHHHCCC-eEEeeeeeecC
Confidence 655 48999999988763 322110 00000111011 1 1111222244566777786 66899999864
No 90
>PF00148 Oxidored_nitro: Nitrogenase component 1 type Oxidoreductase; InterPro: IPR000510 Enzymes belonging to this family include cofactor-requiring nitrogenases and protochlorophyllide reductase. The key enzymatic reactions in nitrogen fixation are catalysed by the nitrogenase complex, which has two components, the iron protein (component 2), and a component (component 1) which is either a molybdenum-iron, vanadium-iron or iron-iron protein. The enzyme (1.18.6.1 from EC) forms a hexamer of two alpha, two beta and two delta chains. Protochlorophyllide reductase (1.3.1.33 from EC) is involved in the light-dependent accumulation of chlorophyll, probably at the step of reduction of protochlorophyllide to chlorophyllide.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QH1_C 1QH8_A 1H1L_C 1QGU_A 3AEK_C 3AET_C 3AER_C 3AEU_A 3AES_C 3AEQ_C ....
Probab=25.43 E-value=3.1e+02 Score=23.16 Aligned_cols=93 Identities=16% Similarity=0.207 Sum_probs=52.8
Q ss_pred CCCHHHHHHHHHHHhhcCCccccceEEEeccCCC-ChhHHHHHHHHHHHHhCCCcccEEEEecCCCCCCCCCCCCCCCCC
Q 029874 47 YRNEAEVGEALAEAFSTGLVKREDLFITTKLWNS-DHGHVLEACKDSLKKLQLDYLDLYLVHFPVATKHTGVGTTDSALD 125 (186)
Q Consensus 47 Yg~e~~vG~~l~~~~~~~~~~R~~~~i~tK~~~~-~~~~i~~~~~~sl~~Lg~~~lDl~~lH~p~~~~~~~~~~~~~~~~ 125 (186)
+|.+.-+-+++++..++. .++=++|.+-..+. --.++..-+++.-++.+. .++.+|.+....
T Consensus 56 ~G~~~kL~~~i~~~~~~~--~P~~i~v~~sC~~~iIGdD~~~v~~~~~~~~~~---~vi~v~~~gf~~------------ 118 (398)
T PF00148_consen 56 FGGEEKLREAIKEIAEKY--KPKAIFVVTSCVPEIIGDDIEAVARELQEEYGI---PVIPVHTPGFSG------------ 118 (398)
T ss_dssp HTSHHHHHHHHHHHHHHH--STSEEEEEE-HHHHHTTTTHHHHHHHHHHHHSS---EEEEEE--TTSS------------
T ss_pred hcchhhHHHHHHHHHhcC--CCcEEEEECCCCHHHhCCCHHHHHHHhhcccCC---cEEEEECCCccC------------
Confidence 467777778887765543 44666776665321 223344444444445553 889999887631
Q ss_pred CCCcccccccccHHHHHHHHHHHH-H------cCCccEEEecCCC
Q 029874 126 ADGVLEIDTTISLETTWHAMEDLV-S------MGLVRSIGIRYVG 163 (186)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~l~~l~-~------~G~ir~iGvsn~~ 163 (186)
+.......++++|-+.. + .+.|--||.++..
T Consensus 119 -------~~~~G~~~a~~~l~~~~~~~~~~~~~~~VNiiG~~~~~ 156 (398)
T PF00148_consen 119 -------SYSQGYDAALRALAEQLVKPPEEKKPRSVNIIGGSPLG 156 (398)
T ss_dssp -------SHHHHHHHHHHHHHHHHTTGTTTTSSSEEEEEEESTBT
T ss_pred -------CccchHHHHHHHHHhhcccccccCCCCceEEecCcCCC
Confidence 22233556666665554 2 3678888999776
No 91
>KOG2733 consensus Uncharacterized membrane protein [Function unknown]
Probab=24.39 E-value=1.3e+02 Score=26.05 Aligned_cols=45 Identities=16% Similarity=0.211 Sum_probs=29.4
Q ss_pred HHHHHHHHHhCCceEeCCCCCC-CHHHHHHHHHHHhhcCCccccceEEEecc
Q 029874 27 RDLIINAIKIGYRHIDCAADYR-NEAEVGEALAEAFSTGLVKREDLFITTKL 77 (186)
Q Consensus 27 ~~~l~~a~~~Gi~~~Dta~~Yg-~e~~vG~~l~~~~~~~~~~R~~~~i~tK~ 77 (186)
+.+++.|+|+|.+++|.|.... -|.+--+.=.. ..++.++|.+-+
T Consensus 99 E~VVkacienG~~~vDISGEP~f~E~mq~kYhd~------A~ekGVYIVsaC 144 (423)
T KOG2733|consen 99 EPVVKACIENGTHHVDISGEPQFMERMQLKYHDL------AKEKGVYIVSAC 144 (423)
T ss_pred cHHHHHHHHcCCceeccCCCHHHHHHHHHHHHHH------HHhcCeEEEeec
Confidence 4689999999999999985432 23333333222 255667777766
No 92
>PF01487 DHquinase_I: Type I 3-dehydroquinase; InterPro: IPR001381 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. The best studied type I enzyme is from Escherichia coli (gene aroD) and related bacteria where it is a homodimeric protein. In fungi, dehydroquinase is part of a multifunctional enzyme which catalyzes five consecutive steps in the shikimate pathway. A histidine [] is involved in the catalytic mechanism.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 2O7Q_A 2GPT_A 2O7S_A 1SFL_A 2OCZ_A 2OX1_C 1GQN_A 1QFE_B 1L9W_D 3L9C_A ....
Probab=24.09 E-value=3.4e+02 Score=20.95 Aligned_cols=80 Identities=15% Similarity=0.231 Sum_probs=43.7
Q ss_pred ccCCchhHHHHHHHHHHhCCceEeCCCCCCCHHHHHHHHHHHhhcCCccccceEEEeccCCCCh--hHHHHHHHHHHHHh
Q 029874 19 WRMDESNIRDLIINAIKIGYRHIDCAADYRNEAEVGEALAEAFSTGLVKREDLFITTKLWNSDH--GHVLEACKDSLKKL 96 (186)
Q Consensus 19 ~~~~~~~~~~~l~~a~~~Gi~~~Dta~~Yg~e~~vG~~l~~~~~~~~~~R~~~~i~tK~~~~~~--~~i~~~~~~sl~~L 96 (186)
++.++++-.+++..+++.|+.++|.--....+...-...... .+..++++..-+..++ +.+.+.+++. +.+
T Consensus 70 ~~~~~~~~~~ll~~~~~~~~d~iDiE~~~~~~~~~~~~~~~~------~~~~iI~S~H~f~~tp~~~~l~~~~~~~-~~~ 142 (224)
T PF01487_consen 70 FQGSEEEYLELLERAIRLGPDYIDIELDLFPDDLKSRLAARK------GGTKIILSYHDFEKTPSWEELIELLEEM-QEL 142 (224)
T ss_dssp BSS-HHHHHHHHHHHHHHTSSEEEEEGGCCHHHHHHHHHHHH------TTSEEEEEEEESS---THHHHHHHHHHH-HHT
T ss_pred CcCCHHHHHHHHHHHHHcCCCEEEEEcccchhHHHHHHHHhh------CCCeEEEEeccCCCCCCHHHHHHHHHHH-Hhc
Confidence 455667788999999999999999754422222211222221 4567777777555433 3355544443 367
Q ss_pred CCCcccEEE
Q 029874 97 QLDYLDLYL 105 (186)
Q Consensus 97 g~~~lDl~~ 105 (186)
|.|.+=+..
T Consensus 143 gadivKia~ 151 (224)
T PF01487_consen 143 GADIVKIAV 151 (224)
T ss_dssp T-SEEEEEE
T ss_pred CCCeEEEEe
Confidence 755444443
No 93
>PRK10302 hypothetical protein; Provisional
Probab=24.09 E-value=4e+02 Score=21.77 Aligned_cols=91 Identities=15% Similarity=0.172 Sum_probs=58.1
Q ss_pred ccccccccCCch--hHHHHHHHHHHhCCceEeC-CCCCC--CHHHHHHHHHHHhhcCCccccceEEEeccCCC-------
Q 029874 13 IIGLGVWRMDES--NIRDLIINAIKIGYRHIDC-AADYR--NEAEVGEALAEAFSTGLVKREDLFITTKLWNS------- 80 (186)
Q Consensus 13 ~lglG~~~~~~~--~~~~~l~~a~~~Gi~~~Dt-a~~Yg--~e~~vG~~l~~~~~~~~~~R~~~~i~tK~~~~------- 80 (186)
.||.++|..+.= ...+.+.+ +..-.|.++. +..|. ++..+.++.++ ..+++..+.|++..
T Consensus 3 ~IGtsgWsy~~W~g~~~~~L~~-Ya~~F~tVEiNsTFY~~P~~~t~~~W~~~-------~P~~F~F~vKa~r~iTH~~~L 74 (272)
T PRK10302 3 YIGLPQWQHPKWVRLGITSLED-YARHFNCVEGNTTLYALPKPEIVLRWRDM-------TTDDFRFCFKFPATISHQAAL 74 (272)
T ss_pred EEEeCCCCCccccCccHHHHHH-HHhhCCEEEECccccCCCCHHHHHHHHHh-------CCCCcEEEEEEchhhcCCccc
Confidence 356666654210 01233333 3445777765 56786 79999999887 45789999998643
Q ss_pred -ChhHHHHHHHHHHHHhCCCcccEEEEecCCCC
Q 029874 81 -DHGHVLEACKDSLKKLQLDYLDLYLVHFPVAT 112 (186)
Q Consensus 81 -~~~~i~~~~~~sl~~Lg~~~lDl~~lH~p~~~ 112 (186)
+.+...+.+.++++-|+ +.+-.+++-.|...
T Consensus 75 ~~~~~~~~~F~~~~~pL~-~kLG~vL~QfPpsf 106 (272)
T PRK10302 75 RHCDDLVQEFFTRLAPLA-DRIGQYWLQLPAAF 106 (272)
T ss_pred cChHHHHHHHHHHHHHHh-hhheeEEEEcCCCC
Confidence 33444455666778887 78888888887543
No 94
>TIGR03586 PseI pseudaminic acid synthase.
Probab=23.61 E-value=4.5e+02 Score=22.14 Aligned_cols=123 Identities=11% Similarity=0.035 Sum_probs=65.3
Q ss_pred CCchhHHHHHHHHHHhCCceEeCCCCCCCHHHHHH-----------------HHHHHhhcCCccccceEEEeccCCCChh
Q 029874 21 MDESNIRDLIINAIKIGYRHIDCAADYRNEAEVGE-----------------ALAEAFSTGLVKREDLFITTKLWNSDHG 83 (186)
Q Consensus 21 ~~~~~~~~~l~~a~~~Gi~~~Dta~~Yg~e~~vG~-----------------~l~~~~~~~~~~R~~~~i~tK~~~~~~~ 83 (186)
++.+.-.++..++-+.|+.++-|.-.-.+-..+-+ .|+..-. ..+.++++|=. .+.+
T Consensus 74 l~~e~~~~L~~~~~~~Gi~~~stpfd~~svd~l~~~~v~~~KI~S~~~~n~~LL~~va~----~gkPvilstG~--~t~~ 147 (327)
T TIGR03586 74 TPWEWHKELFERAKELGLTIFSSPFDETAVDFLESLDVPAYKIASFEITDLPLIRYVAK----TGKPIIMSTGI--ATLE 147 (327)
T ss_pred CCHHHHHHHHHHHHHhCCcEEEccCCHHHHHHHHHcCCCEEEECCccccCHHHHHHHHh----cCCcEEEECCC--CCHH
Confidence 45566677888889999999976543322111111 1111100 11234444333 4677
Q ss_pred HHHHHHHHHHHHhCCCcccEEEEecCCCCCCCCCCCCCCCCCCCCcccccccccHHHHHHHHHHHHHcCCccEEEecCCC
Q 029874 84 HVLEACKDSLKKLQLDYLDLYLVHFPVATKHTGVGTTDSALDADGVLEIDTTISLETTWHAMEDLVSMGLVRSIGIRYVG 163 (186)
Q Consensus 84 ~i~~~~~~sl~~Lg~~~lDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvsn~~ 163 (186)
.+..+++...+ -| .-++.++|+.... + ... .. . -+.++..|++.-. --||+|.|+
T Consensus 148 Ei~~Av~~i~~-~g--~~~i~LlhC~s~Y-P---------~~~-~~--~--------nL~~i~~lk~~f~-~pVG~SDHt 202 (327)
T TIGR03586 148 EIQEAVEACRE-AG--CKDLVLLKCTSSY-P---------APL-ED--A--------NLRTIPDLAERFN-VPVGLSDHT 202 (327)
T ss_pred HHHHHHHHHHH-CC--CCcEEEEecCCCC-C---------CCc-cc--C--------CHHHHHHHHHHhC-CCEEeeCCC
Confidence 77777777653 33 3479999986443 1 000 01 1 1455555555432 369999998
Q ss_pred chh-HhhHHhhc
Q 029874 164 ILN-PCEHSIRS 174 (186)
Q Consensus 164 ~~~-l~~~~~~~ 174 (186)
... +..+++..
T Consensus 203 ~G~~~~~aAva~ 214 (327)
T TIGR03586 203 LGILAPVAAVAL 214 (327)
T ss_pred CchHHHHHHHHc
Confidence 664 33333433
No 95
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function.
Probab=23.37 E-value=1.3e+02 Score=24.78 Aligned_cols=49 Identities=18% Similarity=0.259 Sum_probs=33.0
Q ss_pred hhHHHHHHHHHHHHhCCCcc--cEEEEecCCCCCCCCCCCCCCCCCCCCcccccccccHHHHHHHHHHHHHcCCccE
Q 029874 82 HGHVLEACKDSLKKLQLDYL--DLYLVHFPVATKHTGVGTTDSALDADGVLEIDTTISLETTWHAMEDLVSMGLVRS 156 (186)
Q Consensus 82 ~~~i~~~~~~sl~~Lg~~~l--Dl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~ 156 (186)
.+...+.+.+.+++||+..- ..+.=+.| .....+++.+.+|+++|.|-.
T Consensus 81 ~~~~~~~~~~~l~~lgI~~Dw~~~~~T~~~--------------------------~~~~~v~~~f~~L~~~G~iY~ 131 (312)
T cd00668 81 VEEMSGEHKEDFRRLGISYDWSDEYITTEP--------------------------EYSKAVELIFSRLYEKGLIYR 131 (312)
T ss_pred HHHHHHHHHHHHHHhCccccCCCCeECCCH--------------------------HHHHHHHHHHHHHHHCCCEEe
Confidence 46678888999999997521 12211111 125678999999999999764
No 96
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=23.31 E-value=4.3e+02 Score=21.81 Aligned_cols=127 Identities=12% Similarity=0.151 Sum_probs=66.9
Q ss_pred CchhHHHHHHHHHHhCCceEe----------CCCCCC-----CHHHHHHHHHHHhhcCCccccceEEEeccC--CC-Chh
Q 029874 22 DESNIRDLIINAIKIGYRHID----------CAADYR-----NEAEVGEALAEAFSTGLVKREDLFITTKLW--NS-DHG 83 (186)
Q Consensus 22 ~~~~~~~~l~~a~~~Gi~~~D----------ta~~Yg-----~e~~vG~~l~~~~~~~~~~R~~~~i~tK~~--~~-~~~ 83 (186)
+.+...++...+.+.|+..|| +...+| +-..+.+.++...+. -++-|+.|+- .. +++
T Consensus 64 ~~~~~~~aa~~~~~~~~~~IDlN~GCP~~~v~~~g~Ga~Ll~~p~~~~~iv~~~~~~-----~~~pvsvKiR~g~~~~~~ 138 (309)
T PF01207_consen 64 DPEDLAEAAEIVAELGFDGIDLNMGCPAPKVTKGGAGAALLKDPDLLAEIVKAVRKA-----VPIPVSVKIRLGWDDSPE 138 (309)
T ss_dssp -HHHHHHHHHHHCCTT-SEEEEEE---SHHHHHCT-GGGGGC-HHHHHHHHHHHHHH------SSEEEEEEESECT--CH
T ss_pred cHHHHHHHHHhhhccCCcEEeccCCCCHHHHhcCCcChhhhcChHHhhHHHHhhhcc-----cccceEEecccccccchh
Confidence 455566666666677999999 344555 456777777765221 2356777762 22 344
Q ss_pred HHHHHHHHHHHHhCCCcccEEEEecCCCCCCCCCCCCCCCCCCCCcccccccccHHHHHHHHHHHHHcCCccEEEecCCC
Q 029874 84 HVLEACKDSLKKLQLDYLDLYLVHFPVATKHTGVGTTDSALDADGVLEIDTTISLETTWHAMEDLVSMGLVRSIGIRYVG 163 (186)
Q Consensus 84 ~i~~~~~~sl~~Lg~~~lDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvsn~~ 163 (186)
...+ +-..++..| +|.+.+|.-..... ..+ ..-|+.+.++++.=.|--||=.+..
T Consensus 139 ~~~~-~~~~l~~~G---~~~i~vH~Rt~~q~-----------~~~----------~a~w~~i~~i~~~~~ipvi~NGdI~ 193 (309)
T PF01207_consen 139 ETIE-FARILEDAG---VSAITVHGRTRKQR-----------YKG----------PADWEAIAEIKEALPIPVIANGDIF 193 (309)
T ss_dssp HHHH-HHHHHHHTT-----EEEEECS-TTCC-----------CTS-------------HHHHHHCHHC-TSEEEEESS--
T ss_pred HHHH-HHHHhhhcc---cceEEEecCchhhc-----------CCc----------ccchHHHHHHhhcccceeEEcCccC
Confidence 4444 445667777 78999996322110 000 2348888888887667777766655
Q ss_pred chhHhhHHhhccCCC
Q 029874 164 ILNPCEHSIRSSKFS 178 (186)
Q Consensus 164 ~~~l~~~~~~~~~~~ 178 (186)
..+-++.+++.-..|
T Consensus 194 s~~d~~~~~~~tg~d 208 (309)
T PF01207_consen 194 SPEDAERMLEQTGAD 208 (309)
T ss_dssp SHHHHHHHCCCH-SS
T ss_pred CHHHHHHHHHhcCCc
Confidence 555455555543334
No 97
>COG0420 SbcD DNA repair exonuclease [DNA replication, recombination, and repair]
Probab=23.26 E-value=2.5e+02 Score=23.77 Aligned_cols=68 Identities=12% Similarity=0.043 Sum_probs=43.5
Q ss_pred hhHHHHHHHHHHHHhCCCcccEEEEecCCCCCCCCCCCCCCCCCCCCcccccccccHHHHHHHHHHHHHcCCccEEEecC
Q 029874 82 HGHVLEACKDSLKKLQLDYLDLYLVHFPVATKHTGVGTTDSALDADGVLEIDTTISLETTWHAMEDLVSMGLVRSIGIRY 161 (186)
Q Consensus 82 ~~~i~~~~~~sl~~Lg~~~lDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvsn 161 (186)
.+...+++.+.++...-..+|++++-..-+... .++......+.++|.+|.+.|.=-++=..|
T Consensus 22 ~~d~~~~f~~~l~~a~~~~vD~vliAGDlFd~~-----------------~Ps~~a~~~~~~~l~~l~~~~Ipv~~I~GN 84 (390)
T COG0420 22 LEDQKKAFDELLEIAKEEKVDFVLIAGDLFDTN-----------------NPSPRALKLFLEALRRLKDAGIPVVVIAGN 84 (390)
T ss_pred hHHHHHHHHHHHHHHHHccCCEEEEccccccCC-----------------CCCHHHHHHHHHHHHHhccCCCcEEEecCC
Confidence 577888899999988888899988764322211 233344566667777777754433444456
Q ss_pred CCchh
Q 029874 162 VGILN 166 (186)
Q Consensus 162 ~~~~~ 166 (186)
|+...
T Consensus 85 HD~~~ 89 (390)
T COG0420 85 HDSPS 89 (390)
T ss_pred CCchh
Confidence 66544
No 98
>PRK06740 histidinol-phosphatase; Validated
Probab=23.10 E-value=4.5e+02 Score=22.00 Aligned_cols=24 Identities=13% Similarity=0.199 Sum_probs=19.2
Q ss_pred chhHHHHHHHHHHhCCceEeCCCC
Q 029874 23 ESNIRDLIINAIKIGYRHIDCAAD 46 (186)
Q Consensus 23 ~~~~~~~l~~a~~~Gi~~~Dta~~ 46 (186)
....++.|+.|++.|+..+=.+.+
T Consensus 60 ~~~~e~yv~~Ai~~G~~~ig~SdH 83 (331)
T PRK06740 60 TKWIDLYLEEALRKGIKEVGIVDH 83 (331)
T ss_pred cchHHHHHHHHHHCCCcEEEECCC
Confidence 455789999999999998765554
No 99
>COG1795 Formaldehyde-activating enzyme nesessary for methanogenesis [Energy production and conversion]
Probab=23.08 E-value=1.9e+02 Score=21.70 Aligned_cols=32 Identities=25% Similarity=0.541 Sum_probs=25.4
Q ss_pred CHHHHHHHHHHHhhcCCcccc---ceEEEeccCCC
Q 029874 49 NEAEVGEALAEAFSTGLVKRE---DLFITTKLWNS 80 (186)
Q Consensus 49 ~e~~vG~~l~~~~~~~~~~R~---~~~i~tK~~~~ 80 (186)
++..+.++..+.++.|.++|+ +++|.+.+|..
T Consensus 83 aQ~AVAkAVadsveegiip~e~~dd~vvi~svfv~ 117 (170)
T COG1795 83 AQAAVAKAVADSVEEGIIPREQADDVVVIVSVFVH 117 (170)
T ss_pred HHHHHHHHHHHHHHhcCCChhHhcCEEEEEEeEeC
Confidence 688999999999999988885 57776666643
No 100
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases. Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.
Probab=22.99 E-value=1.3e+02 Score=24.83 Aligned_cols=47 Identities=21% Similarity=0.261 Sum_probs=32.2
Q ss_pred hhHHHHHHHHHHHHhCCCcccEEEEecCCCCCCCCCCCCCCCCCCCCcccccccccHHHHHHHHHHHHHcCCc
Q 029874 82 HGHVLEACKDSLKKLQLDYLDLYLVHFPVATKHTGVGTTDSALDADGVLEIDTTISLETTWHAMEDLVSMGLV 154 (186)
Q Consensus 82 ~~~i~~~~~~sl~~Lg~~~lDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~i 154 (186)
.+...+.+++.+++||++ .|.+... .. ......+.+.+++|+++|.+
T Consensus 68 ~~~~~~~~~~~l~~LgI~-~D~~~~t----t~---------------------~~~~~~v~~i~~~L~ekG~i 114 (319)
T cd00814 68 CDKYHEIFKDLFKWLNIS-FDYFIRT----TS---------------------PRHKEIVQEFFKKLYENGYI 114 (319)
T ss_pred HHHHHHHHHHHHHHcCCc-CCCCeeC----CC---------------------HHHHHHHHHHHHHHHHCCCE
Confidence 456778889999999985 5754221 10 01134578899999999998
No 101
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=22.93 E-value=4.6e+02 Score=22.07 Aligned_cols=118 Identities=12% Similarity=0.069 Sum_probs=65.7
Q ss_pred cCCchhHHHHHHHHHHhCCceEeCCCCCCCHHHHHH-----------------HHHHHhhcCCccccceEEEeccCCCCh
Q 029874 20 RMDESNIRDLIINAIKIGYRHIDCAADYRNEAEVGE-----------------ALAEAFSTGLVKREDLFITTKLWNSDH 82 (186)
Q Consensus 20 ~~~~~~~~~~l~~a~~~Gi~~~Dta~~Yg~e~~vG~-----------------~l~~~~~~~~~~R~~~~i~tK~~~~~~ 82 (186)
.++.+...++..+|-+.|+.+|-|.-.-.+-..+.+ .|+..-. ..+.++|+|=. .+.
T Consensus 72 ~l~~e~~~~L~~~~~~~Gi~~~stpfd~~svd~l~~~~v~~~KIaS~~~~n~pLL~~~A~----~gkPvilStGm--atl 145 (329)
T TIGR03569 72 ELSEEDHRELKEYCESKGIEFLSTPFDLESADFLEDLGVPRFKIPSGEITNAPLLKKIAR----FGKPVILSTGM--ATL 145 (329)
T ss_pred CCCHHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHhcCCCEEEECcccccCHHHHHHHHh----cCCcEEEECCC--CCH
Confidence 457777888899999999999966433221111111 1121100 12335555444 478
Q ss_pred hHHHHHHHHHHHHhCCCcccEEEEecCCCCCCCCCCCCCCCCCCCCcccccccccHHHHHHHHHHHHHcCCccEEEecCC
Q 029874 83 GHVLEACKDSLKKLQLDYLDLYLVHFPVATKHTGVGTTDSALDADGVLEIDTTISLETTWHAMEDLVSMGLVRSIGIRYV 162 (186)
Q Consensus 83 ~~i~~~~~~sl~~Lg~~~lDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvsn~ 162 (186)
+.+..+++...+ -|.+.-++.++|+..... .... . . -+.++..|++.=. .-||.|.|
T Consensus 146 ~Ei~~Av~~i~~-~G~~~~~i~llhC~s~YP----------~~~~-~--~--------nL~~I~~Lk~~f~-~pVG~SdH 202 (329)
T TIGR03569 146 EEIEAAVGVLRD-AGTPDSNITLLHCTTEYP----------APFE-D--V--------NLNAMDTLKEAFD-LPVGYSDH 202 (329)
T ss_pred HHHHHHHHHHHH-cCCCcCcEEEEEECCCCC----------CCcc-c--C--------CHHHHHHHHHHhC-CCEEECCC
Confidence 888888887753 343212699999975431 0000 0 1 1455555555422 47999999
Q ss_pred Cchh
Q 029874 163 GILN 166 (186)
Q Consensus 163 ~~~~ 166 (186)
+...
T Consensus 203 t~G~ 206 (329)
T TIGR03569 203 TLGI 206 (329)
T ss_pred CccH
Confidence 8764
No 102
>cd08555 PI-PLCc_GDPD_SF Catalytic domain of phosphoinositide-specific phospholipase C-like phosphodiesterases superfamily. The PI-PLC-like phosphodiesterases superfamily represents the catalytic domains of bacterial phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13), eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11), glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria, as well as their uncharacterized homologs found in organisms ranging from bacteria and archaea to metazoans, plants, and fungi. PI-PLCs are ubiquitous enzymes hydrolyzing the membrane lipid phosphoinositides to yield two important second messengers, inositol phosphates and diacylglycerol (DAG). GP-GDEs play essential roles in glycerol metabolism and catalyze the hydrolysis of glycerophosph
Probab=22.91 E-value=95 Score=23.19 Aligned_cols=21 Identities=19% Similarity=0.370 Sum_probs=17.8
Q ss_pred CchhHHHHHHHHHHhCCceEe
Q 029874 22 DESNIRDLIINAIKIGYRHID 42 (186)
Q Consensus 22 ~~~~~~~~l~~a~~~Gi~~~D 42 (186)
.++.....+..|++.|++.|+
T Consensus 11 ~peNT~~af~~a~~~G~~~iE 31 (179)
T cd08555 11 GQENTLEAFYRALDAGARGLE 31 (179)
T ss_pred CCccHHHHHHHHHHcCCCEEE
Confidence 346677899999999999886
No 103
>TIGR00221 nagA N-acetylglucosamine-6-phosphate deacetylase.
Probab=22.81 E-value=4.9e+02 Score=22.27 Aligned_cols=36 Identities=11% Similarity=0.205 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHcCCccEEEecCCCchhHhhHHhhccC
Q 029874 140 TTWHAMEDLVSMGLVRSIGIRYVGILNPCEHSIRSSK 176 (186)
Q Consensus 140 ~~~~~l~~l~~~G~ir~iGvsn~~~~~l~~~~~~~~~ 176 (186)
.+.+.++.|+++|.+-++|=||-+.++ +.++++.|.
T Consensus 178 ~~~~~i~~l~~~gi~vs~GHs~A~~~~-~~~a~~~Ga 213 (380)
T TIGR00221 178 QHFELIRHLKDAGIIVSAGHTNATYEL-AKAAFKAGA 213 (380)
T ss_pred ChHHHHHHHHHCCeEEEeeCCCCCHHH-HHHHHHcCC
Confidence 357888999999999999999988888 566666654
No 104
>COG0429 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=22.46 E-value=4.9e+02 Score=22.19 Aligned_cols=91 Identities=11% Similarity=0.042 Sum_probs=54.5
Q ss_pred eEEEeccCC-CChhHHHHHHHHHHHHhCCCcccEEEEecCCCCCCCCCCCCCCCCCCCCcccccccccHHHHHHHHHHHH
Q 029874 71 LFITTKLWN-SDHGHVLEACKDSLKKLQLDYLDLYLVHFPVATKHTGVGTTDSALDADGVLEIDTTISLETTWHAMEDLV 149 (186)
Q Consensus 71 ~~i~tK~~~-~~~~~i~~~~~~sl~~Lg~~~lDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 149 (186)
.+|.+.... .+.+...+.+-+.+.+=| ..++.+||-.+....- ..|. ....-+ .+++...+..++
T Consensus 77 ~vVl~HGL~G~s~s~y~r~L~~~~~~rg---~~~Vv~~~Rgcs~~~n----~~p~----~yh~G~---t~D~~~~l~~l~ 142 (345)
T COG0429 77 LVVLFHGLEGSSNSPYARGLMRALSRRG---WLVVVFHFRGCSGEAN----TSPR----LYHSGE---TEDIRFFLDWLK 142 (345)
T ss_pred eEEEEeccCCCCcCHHHHHHHHHHHhcC---CeEEEEecccccCCcc----cCcc----eecccc---hhHHHHHHHHHH
Confidence 566655543 345557777777776665 8899999977764310 0010 001111 244555555555
Q ss_pred H---cCCccEEEecCCCchhHhhHHhhccC
Q 029874 150 S---MGLVRSIGIRYVGILNPCEHSIRSSK 176 (186)
Q Consensus 150 ~---~G~ir~iGvsn~~~~~l~~~~~~~~~ 176 (186)
+ .+++-++|+| .+-+.+...+.+.|.
T Consensus 143 ~~~~~r~~~avG~S-LGgnmLa~ylgeeg~ 171 (345)
T COG0429 143 ARFPPRPLYAVGFS-LGGNMLANYLGEEGD 171 (345)
T ss_pred HhCCCCceEEEEec-ccHHHHHHHHHhhcc
Confidence 4 7889999999 477787777766653
No 105
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=22.06 E-value=4e+02 Score=21.00 Aligned_cols=33 Identities=18% Similarity=0.211 Sum_probs=26.0
Q ss_pred ccccccccCCchhHHHHHHHHHHhCCceEeCCC
Q 029874 13 IIGLGVWRMDESNIRDLIINAIKIGYRHIDCAA 45 (186)
Q Consensus 13 ~lglG~~~~~~~~~~~~l~~a~~~Gi~~~Dta~ 45 (186)
+||+-|+.+......+.++.+-+.|+..++...
T Consensus 2 ~lg~~t~~~~~~~l~~~l~~~~~~G~~~vEl~~ 34 (275)
T PRK09856 2 KTGMFTCGHQRLPIEHAFRDASELGYDGIEIWG 34 (275)
T ss_pred ceeeeehhheeCCHHHHHHHHHHcCCCEEEEcc
Confidence 466666666656688999999999999999754
No 106
>PRK08392 hypothetical protein; Provisional
Probab=21.91 E-value=3.8e+02 Score=20.65 Aligned_cols=24 Identities=25% Similarity=0.379 Sum_probs=19.5
Q ss_pred hhHHHHHHHHHHhCCceEeCCCCC
Q 029874 24 SNIRDLIINAIKIGYRHIDCAADY 47 (186)
Q Consensus 24 ~~~~~~l~~a~~~Gi~~~Dta~~Y 47 (186)
...++.+..|.+.|++.+=.+.+.
T Consensus 14 ~~~~e~v~~A~~~Gl~~i~iTdH~ 37 (215)
T PRK08392 14 GSVRDNIAEAERKGLRLVGISDHI 37 (215)
T ss_pred CCHHHHHHHHHHcCCCEEEEccCC
Confidence 346889999999999988776664
No 107
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=21.89 E-value=2.3e+02 Score=21.44 Aligned_cols=68 Identities=15% Similarity=0.132 Sum_probs=42.4
Q ss_pred hhHHHHHHHHHHhCCceEeCCCCCC-CHHHHHHHHHHHhhcCCccccceEEEecc-CC--CChhHHHHHHHHHHHHhCCC
Q 029874 24 SNIRDLIINAIKIGYRHIDCAADYR-NEAEVGEALAEAFSTGLVKREDLFITTKL-WN--SDHGHVLEACKDSLKKLQLD 99 (186)
Q Consensus 24 ~~~~~~l~~a~~~Gi~~~Dta~~Yg-~e~~vG~~l~~~~~~~~~~R~~~~i~tK~-~~--~~~~~i~~~~~~sl~~Lg~~ 99 (186)
+..+-++++|-+.|+.+|=.|..|| +-..+-+.+.. . =++++.|.- .. .+...+.+.+++.|+..|.+
T Consensus 14 ~tle~a~erA~elgik~~vVAS~tG~tA~k~lemveg-------~-lkvVvVthh~Gf~e~g~~e~~~E~~~~L~erGa~ 85 (186)
T COG1751 14 ETLEIAVERAKELGIKHIVVASSTGYTALKALEMVEG-------D-LKVVVVTHHAGFEEKGTQEMDEEVRKELKERGAK 85 (186)
T ss_pred HHHHHHHHHHHhcCcceEEEEecccHHHHHHHHhccc-------C-ceEEEEEeecccccCCceecCHHHHHHHHHcCce
Confidence 3345667778889999999888887 33333333322 1 124444432 22 25677888899999999854
No 108
>TIGR03126 one_C_fae formaldehyde-activating enzyme. This family consists of formaldehyde-activating enzyme, or the corresponding domain of longer, bifunctional proteins. It links formaldehyde to the C1 carrier tetrahydromethanopterin (H4MPT), an analog of tetrahydrofolate, and is common among species with H4MPT. The ribulose monophosphate (RuMP) pathway, which removes the toxic metabolite formaldehyde by assimilation, runs in the opposite direction in some species to produce ribulose 5-phosphate for nucleotide biosynthesis, leaving formaldehyde as an additional metabolite. In these species, formaldehyde activating enzyme may occur as a fusion protein with D-arabino 3-hexulose 6-phosphate formaldehyde lyase from the RuMP pathway.
Probab=21.84 E-value=2e+02 Score=21.63 Aligned_cols=32 Identities=25% Similarity=0.537 Sum_probs=26.0
Q ss_pred CHHHHHHHHHHHhhcCCcccc---ceEEEeccCCC
Q 029874 49 NEAEVGEALAEAFSTGLVKRE---DLFITTKLWNS 80 (186)
Q Consensus 49 ~e~~vG~~l~~~~~~~~~~R~---~~~i~tK~~~~ 80 (186)
.+..+++++.+.++.|.++++ +++|..-+|..
T Consensus 81 aQ~avA~AVaD~V~eG~iP~~~addl~Iiv~Vfi~ 115 (160)
T TIGR03126 81 AQAAVAKAVADSVEEGIIPKDEADDLVIIVSVFIH 115 (160)
T ss_pred HHHHHHHHHHHHHHcCCCChhhhCcEEEEEEEEec
Confidence 588999999999999988875 57887777744
No 109
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=21.83 E-value=2.8e+02 Score=25.61 Aligned_cols=27 Identities=15% Similarity=0.079 Sum_probs=21.0
Q ss_pred CccEEEecCCCchhHhhHHhhccCCCCC
Q 029874 153 LVRSIGIRYVGILNPCEHSIRSSKFSTK 180 (186)
Q Consensus 153 ~ir~iGvsn~~~~~l~~~~~~~~~~~~~ 180 (186)
=|--||..|| ++.|-+++..=|.||.+
T Consensus 439 GiIvigATNf-pe~LD~AL~RPGRFD~~ 465 (752)
T KOG0734|consen 439 GIIVIGATNF-PEALDKALTRPGRFDRH 465 (752)
T ss_pred ceEEEeccCC-hhhhhHHhcCCCcccee
Confidence 3568999996 45568999999999943
No 110
>PF02829 3H: 3H domain; InterPro: IPR004173 The 3H domain is named after its three highly conserved histidine residues. The 3H domain appears to be a small molecule-binding domain, based on its occurrence with other domains []. Several proteins carrying this domain are transcriptional regulators from the biotin repressor family. The transcription regulator TM1602 from Thermotoga maritima is a DNA-binding protein thought to belong to a family of de novo NAD synthesis pathway regulators. TM1602 has an N-terminal DNA-binding domain and a C-terminal 3H regulatory domain. The N-terminal domain appears to bind to the NAD promoter region and repress the de novo NAD biosynthesis operon, while the C-terminal 3H domain may bind to nicotinamide, nicotinic acid, or other substrate/products []. The 3H domain has a 2-layer alpha/beta sandwich fold.; GO: 0005488 binding; PDB: 1J5Y_A.
Probab=21.66 E-value=2.8e+02 Score=18.99 Aligned_cols=73 Identities=18% Similarity=0.146 Sum_probs=44.7
Q ss_pred CchhHHHHHHHHHHhCCceEeCC---CCCC---------CHHHHHHHHHHHhhcCCccccceEEEeccCCC-----ChhH
Q 029874 22 DESNIRDLIINAIKIGYRHIDCA---ADYR---------NEAEVGEALAEAFSTGLVKREDLFITTKLWNS-----DHGH 84 (186)
Q Consensus 22 ~~~~~~~~l~~a~~~Gi~~~Dta---~~Yg---------~e~~vG~~l~~~~~~~~~~R~~~~i~tK~~~~-----~~~~ 84 (186)
+.++..+-+..-+++|.+..|.. |.|| +..-+.++++.+-... ...+.-.|..... ..+.
T Consensus 6 ~~~~~~~EL~~IVd~Gg~V~DV~veHp~YG~i~~~L~i~sr~Dv~~Fi~~l~~~~---~~~Ls~LT~GvH~HtI~a~~~e 82 (98)
T PF02829_consen 6 TPDEIEDELEIIVDNGGRVLDVIVEHPVYGEITGNLNISSRRDVDKFIEKLEKSK---AKPLSSLTGGVHYHTIEAPDEE 82 (98)
T ss_dssp -GGGHHHHHHHHHHTT-EEEEEEEEETTTEEEEEEEEE-SHHHHHHHHHHHHH-----S--STTGGGGEEEEEEEESSHH
T ss_pred CHHHHHHHHHHHHHCCCEEEEEEEeCCCCcEEEEEEecCCHHHHHHHHHHHhccC---CcchHHhcCCEeeEEEEECCHH
Confidence 45777888888899999999974 5677 6888999988763322 1111111111100 3456
Q ss_pred HHHHHHHHHHHhC
Q 029874 85 VLEACKDSLKKLQ 97 (186)
Q Consensus 85 i~~~~~~sl~~Lg 97 (186)
..+.+.+.|++.|
T Consensus 83 ~l~~I~~~L~~~G 95 (98)
T PF02829_consen 83 DLDKIEEALKKKG 95 (98)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHCC
Confidence 6777888888876
No 111
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=21.59 E-value=4.9e+02 Score=21.86 Aligned_cols=35 Identities=14% Similarity=0.188 Sum_probs=25.9
Q ss_pred cCCCCcCCccccccccCCchhHHHHHHHHHHhCCceEeCC
Q 029874 5 LNNGFKMPIIGLGVWRMDESNIRDLIINAIKIGYRHIDCA 44 (186)
Q Consensus 5 ~~tg~~v~~lglG~~~~~~~~~~~~l~~a~~~Gi~~~Dta 44 (186)
+|.|...+. |+++.++..+++....++|+..|+.+
T Consensus 11 LRDG~q~~~-----~~f~~~~~~~i~~~L~~aGv~~IEvg 45 (337)
T PRK08195 11 LRDGMHAVR-----HQYTLEQVRAIARALDAAGVPVIEVT 45 (337)
T ss_pred CCCcCcCCC-----CccCHHHHHHHHHHHHHcCCCEEEee
Confidence 456665443 34566888888888889999999984
No 112
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=21.56 E-value=4.7e+02 Score=21.69 Aligned_cols=127 Identities=13% Similarity=0.113 Sum_probs=67.9
Q ss_pred CchhHHHHHHHHHHhCCceEeCC----------CCCC-----CHHHHHHHHHHHhhcCCccccceEEEecc---CCCChh
Q 029874 22 DESNIRDLIINAIKIGYRHIDCA----------ADYR-----NEAEVGEALAEAFSTGLVKREDLFITTKL---WNSDHG 83 (186)
Q Consensus 22 ~~~~~~~~l~~a~~~Gi~~~Dta----------~~Yg-----~e~~vG~~l~~~~~~~~~~R~~~~i~tK~---~~~~~~ 83 (186)
+.++..++.+.+.+.|+..||.- ..+| +-..+.+.++.... .-++.++.|+ |..+..
T Consensus 75 ~~~~~~~aa~~~~~~g~d~IdlN~gCP~~~v~~~g~Gs~ll~~p~~~~eiv~av~~-----a~d~pv~vKiR~G~~~~~~ 149 (321)
T PRK10415 75 DPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDLVKSILTEVVN-----AVDVPVTLKIRTGWAPEHR 149 (321)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHcCCCcccHHhcCHHHHHHHHHHHHH-----hcCCceEEEEEccccCCcc
Confidence 45666677777778899999932 2233 24445555544211 0134577776 322222
Q ss_pred HHHHHHHHHHHHhCCCcccEEEEecCCCCCCCCCCCCCCCCCCCCcccccccccHHHHHHHHHHHHHcCCccEEEecCCC
Q 029874 84 HVLEACKDSLKKLQLDYLDLYLVHFPVATKHTGVGTTDSALDADGVLEIDTTISLETTWHAMEDLVSMGLVRSIGIRYVG 163 (186)
Q Consensus 84 ~i~~~~~~sl~~Lg~~~lDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvsn~~ 163 (186)
... .+-+.+++.|. |.+.+|.-... + ...+. .-|+.+.++++.=.|.=||.....
T Consensus 150 ~~~-~~a~~le~~G~---d~i~vh~rt~~-~----------~~~G~----------a~~~~i~~ik~~~~iPVI~nGgI~ 204 (321)
T PRK10415 150 NCV-EIAQLAEDCGI---QALTIHGRTRA-C----------LFNGE----------AEYDSIRAVKQKVSIPVIANGDIT 204 (321)
T ss_pred hHH-HHHHHHHHhCC---CEEEEecCccc-c----------ccCCC----------cChHHHHHHHHhcCCcEEEeCCCC
Confidence 222 23344666774 66677853211 0 00000 126666777776567777777766
Q ss_pred chhHhhHHhhccCCC
Q 029874 164 ILNPCEHSIRSSKFS 178 (186)
Q Consensus 164 ~~~l~~~~~~~~~~~ 178 (186)
..+-++.+++....|
T Consensus 205 s~~da~~~l~~~gad 219 (321)
T PRK10415 205 DPLKARAVLDYTGAD 219 (321)
T ss_pred CHHHHHHHHhccCCC
Confidence 555466666655555
No 113
>PF13602 ADH_zinc_N_2: Zinc-binding dehydrogenase; PDB: 3TQH_A 2VN8_A 3GOH_A 4A27_A.
Probab=21.24 E-value=1.3e+02 Score=20.54 Aligned_cols=34 Identities=15% Similarity=0.113 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHcCCccEEEecCCCchhHhhHH
Q 029874 138 LETTWHAMEDLVSMGLVRSIGIRYVGILNPCEHS 171 (186)
Q Consensus 138 ~~~~~~~l~~l~~~G~ir~iGvsn~~~~~l~~~~ 171 (186)
..+.++.+.+|.++|+++-.=-..|+.+++.+++
T Consensus 80 ~~~~l~~l~~l~~~G~l~~~i~~~f~l~~~~~A~ 113 (127)
T PF13602_consen 80 RAEALEELAELVAEGKLKPPIDRVFPLEEAPEAH 113 (127)
T ss_dssp HHHHHHHHHHHHHTTSS---EEEEEEGGGHHHHH
T ss_pred HHHHHHHHHHHHHCCCeEEeeccEECHHHHHHHH
Confidence 3567999999999999997666678888877776
No 114
>PRK03995 hypothetical protein; Provisional
Probab=21.02 E-value=4.6e+02 Score=21.41 Aligned_cols=79 Identities=19% Similarity=0.201 Sum_probs=42.7
Q ss_pred cCCccccccccCCchhHHHHHHHHHHhCCceEeCCCCCC----CHHHHHHHHHHHhhcCCccccc-eEEEeccCCCChhH
Q 029874 10 KMPIIGLGVWRMDESNIRDLIINAIKIGYRHIDCAADYR----NEAEVGEALAEAFSTGLVKRED-LFITTKLWNSDHGH 84 (186)
Q Consensus 10 ~v~~lglG~~~~~~~~~~~~l~~a~~~Gi~~~Dta~~Yg----~e~~vG~~l~~~~~~~~~~R~~-~~i~tK~~~~~~~~ 84 (186)
..+.||||.-.+.+ +..+.+++.++.+=-..+.|. ++.++-+++... ..+-+ ++|--| .-+..
T Consensus 181 ~~~~iGiGGgHYap----r~T~~~l~~~~~~GHi~pky~l~~~~~~~i~~a~~ks-----~~~~~~~~id~K---~~k~~ 248 (267)
T PRK03995 181 FKPAIGIGGGHYAP----KFTKLALESEYCFGHIIPKYALDHLSEEVLIQAIEKS-----TPEIDRIVIDWK---GVKSE 248 (267)
T ss_pred CCEEEEECCCCccH----HHHHHHhhCCeeEEeEccccchhcCCHHHHHHHHHhc-----cCCCCEEEEecC---CCCHH
Confidence 34566777644433 234556666666555566664 455555555542 11112 222222 23566
Q ss_pred HHHHHHHHHHHhCCCc
Q 029874 85 VLEACKDSLKKLQLDY 100 (186)
Q Consensus 85 i~~~~~~sl~~Lg~~~ 100 (186)
.++.+.+.++.+|+..
T Consensus 249 ~r~~i~~~le~~gi~v 264 (267)
T PRK03995 249 DRERIIEFLEELGIEV 264 (267)
T ss_pred HHHHHHHHHHHCCCeE
Confidence 7777888888888653
No 115
>PF06819 Arc_PepC: Archaeal Peptidase A24 C-terminal Domain; InterPro: IPR009639 This region is of unknown function found at the C terminus of some archael proteins that have multiple transmembrane domains and are predicted to be aspartic peptidases belonging to the MEROPS peptidase subfamily A24A (type 4 prepilin peptidase 1.
Probab=21.02 E-value=3.1e+02 Score=19.31 Aligned_cols=69 Identities=17% Similarity=0.114 Sum_probs=39.6
Q ss_pred CCccccceEEEeccCCCChhHHHHHHHHHHHHhCCCcccEEEEecCCCCCCCCCCCCCCCCCCCCcccccccccHHHHHH
Q 029874 64 GLVKREDLFITTKLWNSDHGHVLEACKDSLKKLQLDYLDLYLVHFPVATKHTGVGTTDSALDADGVLEIDTTISLETTWH 143 (186)
Q Consensus 64 ~~~~R~~~~i~tK~~~~~~~~i~~~~~~sl~~Lg~~~lDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (186)
|.+.|+.+++..---..+...+...+...++.-....+-=-.+-.|+.. + + .++..+
T Consensus 37 gdIL~e~I~~k~~~v~~d~~~~~~r~k~~l~~~~~~~l~g~~i~~~~~E---------------G---L-----s~E~IE 93 (110)
T PF06819_consen 37 GDILGEIIYEKDDGVYRDRSSFFKRFKFALKTEDGSALTGEKIISTDAE---------------G---L-----SKEDIE 93 (110)
T ss_pred cceehheEEEeCCcEEEecccHHHHHHHHHHhcccccccCCeEEecccc---------------C---C-----CHHHHH
Confidence 5567776666432222355666666777776665554411111222221 0 1 357899
Q ss_pred HHHHHHHcCCcc
Q 029874 144 AMEDLVSMGLVR 155 (186)
Q Consensus 144 ~l~~l~~~G~ir 155 (186)
.|.+|+++|++.
T Consensus 94 ~Lk~Lv~eGKi~ 105 (110)
T PF06819_consen 94 KLKKLVEEGKIE 105 (110)
T ss_pred HHHHHHHcCCCc
Confidence 999999999975
No 116
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=21.01 E-value=4.4e+02 Score=21.12 Aligned_cols=75 Identities=21% Similarity=0.290 Sum_probs=43.2
Q ss_pred chhHHHHHHHHHHhCCceEeCCCCCCCHHH----------HH-----HHHHHHhhcCCccccceEEEeccCCCChhHHHH
Q 029874 23 ESNIRDLIINAIKIGYRHIDCAADYRNEAE----------VG-----EALAEAFSTGLVKREDLFITTKLWNSDHGHVLE 87 (186)
Q Consensus 23 ~~~~~~~l~~a~~~Gi~~~Dta~~Yg~e~~----------vG-----~~l~~~~~~~~~~R~~~~i~tK~~~~~~~~i~~ 87 (186)
..++.++...-.+.|+-.+.++..||.+.. +| ..+..++. .+.+-...-.-+.-...+.+
T Consensus 9 TtE~r~la~~L~~~g~v~~sv~t~~g~~~~~~~~~~~~v~~G~lg~~~~l~~~l~-----~~~i~~vIDATHPfA~~is~ 83 (249)
T PF02571_consen 9 TTEGRKLAERLAEAGYVIVSVATSYGGELLKPELPGLEVRVGRLGDEEGLAEFLR-----ENGIDAVIDATHPFAAEISQ 83 (249)
T ss_pred hHHHHHHHHHHHhcCCEEEEEEhhhhHhhhccccCCceEEECCCCCHHHHHHHHH-----hCCCcEEEECCCchHHHHHH
Confidence 478888888888999844466666752111 11 11222211 11222222222334688999
Q ss_pred HHHHHHHHhCCCccc
Q 029874 88 ACKDSLKKLQLDYLD 102 (186)
Q Consensus 88 ~~~~sl~~Lg~~~lD 102 (186)
.+.+..+++|+.|+=
T Consensus 84 na~~a~~~~~ipylR 98 (249)
T PF02571_consen 84 NAIEACRELGIPYLR 98 (249)
T ss_pred HHHHHHhhcCcceEE
Confidence 999999999976553
No 117
>KOG2400 consensus Nuclear protein ZAP [Defense mechanisms]
Probab=20.93 E-value=49 Score=20.83 Aligned_cols=20 Identities=30% Similarity=0.544 Sum_probs=16.7
Q ss_pred HHHHHHHHHHcCCccEEEec
Q 029874 141 TWHAMEDLVSMGLVRSIGIR 160 (186)
Q Consensus 141 ~~~~l~~l~~~G~ir~iGvs 160 (186)
-|.-+|+-+.+.+.|+||+.
T Consensus 32 rwadieekrsqkkmraigfv 51 (82)
T KOG2400|consen 32 RWADIEEKRSQKKMRAIGFV 51 (82)
T ss_pred eehhhHHHHHHHhhhhheeE
Confidence 37888888999999999964
No 118
>PRK09061 D-glutamate deacylase; Validated
Probab=20.50 E-value=6.1e+02 Score=22.56 Aligned_cols=110 Identities=15% Similarity=0.116 Sum_probs=64.0
Q ss_pred HHHHHHHHHHhCCceEeCCCCC--C-CHHHHHHHHHHHhhcCCccccceEEEeccCCCC---hhHHHHHHHHHHHHhCCC
Q 029874 26 IRDLIINAIKIGYRHIDCAADY--R-NEAEVGEALAEAFSTGLVKREDLFITTKLWNSD---HGHVLEACKDSLKKLQLD 99 (186)
Q Consensus 26 ~~~~l~~a~~~Gi~~~Dta~~Y--g-~e~~vG~~l~~~~~~~~~~R~~~~i~tK~~~~~---~~~i~~~~~~sl~~Lg~~ 99 (186)
..++++.|++.|+..|-+...| + +...+-..++.. .+.+..+..+....+ ......++++.++.....
T Consensus 171 m~~ll~~al~~Ga~gis~~~~y~p~~~~~eL~~l~~~A------~~~g~~v~~H~e~~~~~~~~~e~~av~~~i~lA~~~ 244 (509)
T PRK09061 171 ILELLEQGLDEGALGIGIGAGYAPGTGHKEYLELARLA------ARAGVPTYTHVRYLSNVDPRSSVDAYQELIAAAAET 244 (509)
T ss_pred HHHHHHHHHHCCCCEEecCCccCCCCCHHHHHHHHHHH------HHcCCEEEEEecCcccCCchhHHHHHHHHHHHHHHh
Confidence 5677888899999999775555 2 555666666654 455667777775432 222233444444322211
Q ss_pred cccEEEEecCCCCCCCCCCCCCCCCCCCCcccccccccHHHHHHHHHHHHHcCCccEEEecCCC
Q 029874 100 YLDLYLVHFPVATKHTGVGTTDSALDADGVLEIDTTISLETTWHAMEDLVSMGLVRSIGIRYVG 163 (186)
Q Consensus 100 ~lDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvsn~~ 163 (186)
-.-+.+.|-..... ....++.+.+++++++|.--..-++-|.
T Consensus 245 G~rv~IsHlss~g~----------------------~~~~~~le~I~~Ar~~Gi~Vt~e~~P~~ 286 (509)
T PRK09061 245 GAHMHICHVNSTSL----------------------RDIDRCLALVEKAQAQGLDVTTEAYPYG 286 (509)
T ss_pred CCCEEEEeeccCCc----------------------ccHHHHHHHHHHHHHcCCcEEEEecCcc
Confidence 23366777543210 1246678889999998864444444443
No 119
>PRK07094 biotin synthase; Provisional
Probab=20.44 E-value=4.8e+02 Score=21.33 Aligned_cols=122 Identities=19% Similarity=0.257 Sum_probs=62.9
Q ss_pred CchhHHHHHHHHHHhCCceEeCC----CCCCCHHHHHHHHHHHhhcCCccc-cceEEEeccCCCChhHHHHHHHHHHHHh
Q 029874 22 DESNIRDLIINAIKIGYRHIDCA----ADYRNEAEVGEALAEAFSTGLVKR-EDLFITTKLWNSDHGHVLEACKDSLKKL 96 (186)
Q Consensus 22 ~~~~~~~~l~~a~~~Gi~~~Dta----~~Yg~e~~vG~~l~~~~~~~~~~R-~~~~i~tK~~~~~~~~i~~~~~~sl~~L 96 (186)
+.++..+.++.+.+.|++.|-.. +.| ....+-+.++.. .+ .++.+...+...+. ..-..|++.
T Consensus 71 s~eei~~~~~~~~~~g~~~i~l~gG~~~~~-~~~~l~~l~~~i------~~~~~l~i~~~~g~~~~-----e~l~~Lk~a 138 (323)
T PRK07094 71 SPEEILECAKKAYELGYRTIVLQSGEDPYY-TDEKIADIIKEI------KKELDVAITLSLGERSY-----EEYKAWKEA 138 (323)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEecCCCCCC-CHHHHHHHHHHH------HccCCceEEEecCCCCH-----HHHHHHHHc
Confidence 55667777888888999977433 223 344555555553 21 23433322222222 223345666
Q ss_pred CCCcccEEEEecCCCCCCCCCCCCCCCCCCCCcccccccccHHHHHHHHHHHHHcCCcc----EEEecCCCchhHhhHH
Q 029874 97 QLDYLDLYLVHFPVATKHTGVGTTDSALDADGVLEIDTTISLETTWHAMEDLVSMGLVR----SIGIRYVGILNPCEHS 171 (186)
Q Consensus 97 g~~~lDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir----~iGvsn~~~~~l~~~~ 171 (186)
|++. +. +..+..++ ..........+..+.+++++.+++.|.-- -+|+...+.+++.+.+
T Consensus 139 G~~~---v~-~glEs~~~------------~~~~~i~~~~s~~~~~~~i~~l~~~Gi~v~~~~iiGlpget~ed~~~~l 201 (323)
T PRK07094 139 GADR---YL-LRHETADK------------ELYAKLHPGMSFENRIACLKDLKELGYEVGSGFMVGLPGQTLEDLADDI 201 (323)
T ss_pred CCCE---EE-eccccCCH------------HHHHHhCCCCCHHHHHHHHHHHHHcCCeecceEEEECCCCCHHHHHHHH
Confidence 7554 33 23332211 00000112234678889999999998622 2455555666655544
No 120
>PF14177 YkyB: YkyB-like protein
Probab=20.43 E-value=95 Score=22.70 Aligned_cols=19 Identities=26% Similarity=0.526 Sum_probs=17.0
Q ss_pred HHHHHHHHHcCCccEEEec
Q 029874 142 WHAMEDLVSMGLVRSIGIR 160 (186)
Q Consensus 142 ~~~l~~l~~~G~ir~iGvs 160 (186)
-++|.+|.++|+.+-||+-
T Consensus 30 k~aL~Kll~E~kA~kiGlH 48 (140)
T PF14177_consen 30 KKALQKLLEEGKAKKIGLH 48 (140)
T ss_pred HHHHHHHHHcCcceEEEEe
Confidence 4789999999999999975
No 121
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=20.28 E-value=4.3e+02 Score=20.65 Aligned_cols=38 Identities=13% Similarity=0.193 Sum_probs=28.0
Q ss_pred ecCCCCcCCccccccccCCchhHHHHHHHHHHhCCceEeCCCC
Q 029874 4 TLNNGFKMPIIGLGVWRMDESNIRDLIINAIKIGYRHIDCAAD 46 (186)
Q Consensus 4 ~~~tg~~v~~lglG~~~~~~~~~~~~l~~a~~~Gi~~~Dta~~ 46 (186)
.+|.|.+.+..-| +.++..+++....+.|+..|+....
T Consensus 4 tlRDG~q~~~~~~-----s~e~~~~i~~~L~~~GV~~IEvg~~ 41 (265)
T cd03174 4 TLRDGLQSEGATF-----STEDKLEIAEALDEAGVDSIEVGSG 41 (265)
T ss_pred CCCCcccCCCCCC-----CHHHHHHHHHHHHHcCCCEEEeccC
Confidence 3566766655444 4588888999999999999997543
No 122
>PHA03398 viral phosphatase superfamily protein; Provisional
Probab=20.21 E-value=2.6e+02 Score=23.35 Aligned_cols=41 Identities=17% Similarity=0.309 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHcCCccEEEecCCCchhHhhHHhhccCCCCCc
Q 029874 139 ETTWHAMEDLVSMGLVRSIGIRYVGILNPCEHSIRSSKFSTKF 181 (186)
Q Consensus 139 ~~~~~~l~~l~~~G~ir~iGvsn~~~~~l~~~~~~~~~~~~~~ 181 (186)
.++.+.|++|+++|. .+|+.+.+....++..++.-.++-.|
T Consensus 151 p~V~EtL~eLkekGi--kLaIvTNg~Re~v~~~Le~lgL~~yF 191 (303)
T PHA03398 151 PFVYDSLDELKERGC--VLVLWSYGNREHVVHSLKETKLEGYF 191 (303)
T ss_pred hhHHHHHHHHHHCCC--EEEEEcCCChHHHHHHHHHcCCCccc
Confidence 468899999999998 45555555554456666655555433
No 123
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=20.01 E-value=5.4e+02 Score=21.69 Aligned_cols=70 Identities=7% Similarity=0.029 Sum_probs=43.5
Q ss_pred HHHHHHHHHhCCceEeCCCCCCCHHHHHHHHHHHhhcCCccccceEEEeccCCCChhHHHHHHHHHHHHhCCCc
Q 029874 27 RDLIINAIKIGYRHIDCAADYRNEAEVGEALAEAFSTGLVKREDLFITTKLWNSDHGHVLEACKDSLKKLQLDY 100 (186)
Q Consensus 27 ~~~l~~a~~~Gi~~~Dta~~Yg~e~~vG~~l~~~~~~~~~~R~~~~i~tK~~~~~~~~i~~~~~~sl~~Lg~~~ 100 (186)
.+....++++|+|.+|+.+.+.+....-+.+....+ ....+.+.+-.|......+.+.+.+++--=|.+|
T Consensus 74 ~~~~~~~L~aG~NVV~s~~~h~~~p~~~~~ld~AAk----~~g~vsvi~~GwDPG~~si~r~~~ea~lp~g~~y 143 (324)
T TIGR01921 74 IPEQAPYFAQFANTVDSFDNHRDIPRHRQVMDAAAK----AAGNVSVISTGWDPGMFSINRVYGEAVLPKGQTY 143 (324)
T ss_pred HHHHHHHHHcCCCEEECCCcccCCHHHHHHHHHHHH----HcCCEEEEECCCCcChHHHHHHHHhccCCCCcce
Confidence 567778899999999997765443233333333211 1135666667777777777777777665545443
No 124
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=20.00 E-value=5e+02 Score=21.29 Aligned_cols=129 Identities=13% Similarity=0.043 Sum_probs=65.9
Q ss_pred CCccccccccCCchhHHHHHHHHHH-hCCceEeCCCCC------CCHHHHHHHHHHHhhcCCccccceEEE-eccCCCCh
Q 029874 11 MPIIGLGVWRMDESNIRDLIINAIK-IGYRHIDCAADY------RNEAEVGEALAEAFSTGLVKREDLFIT-TKLWNSDH 82 (186)
Q Consensus 11 v~~lglG~~~~~~~~~~~~l~~a~~-~Gi~~~Dta~~Y------g~e~~vG~~l~~~~~~~~~~R~~~~i~-tK~~~~~~ 82 (186)
=|++-+||..++.- +.+..|++ +|...+-.|-.- ..+..+=+.| ++..+.+. +--...+.
T Consensus 16 ~SRL~lGTgky~s~---~~~~~ai~aSg~evvTvalRR~~~~~~~~~~~~l~~i---------~~~~~~~LPNTaGc~tA 83 (267)
T CHL00162 16 NSRLMLGTGKYKSL---KDAIQSIEASGCEIVTVAIRRLNNNLLNDNSNLLNGL---------DWNKLWLLPNTAGCQTA 83 (267)
T ss_pred ecceEEecCCCCCH---HHHHHHHHHhCCcEEEEEEEEeccCcCCCcchHHHhh---------chhccEECCcCcCCCCH
Confidence 47888999777433 34455553 366555332111 0112222222 22333332 11122344
Q ss_pred hHHHHHHHHHHHHh------CCCcccEEEEecCCCCCCCCCCCCCCCCCCCCcccccccccHHHHHHHHHHHHHcCCccE
Q 029874 83 GHVLEACKDSLKKL------QLDYLDLYLVHFPVATKHTGVGTTDSALDADGVLEIDTTISLETTWHAMEDLVSMGLVRS 156 (186)
Q Consensus 83 ~~i~~~~~~sl~~L------g~~~lDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~ 156 (186)
+...+..+-+.+.. +++++-+=.+..+.+-. .+..+++++-+.|+++|-+-.
T Consensus 84 ~EAv~~A~laRe~~~~~~~~~~~wIKLEVi~D~~~Ll----------------------PD~~etl~Aae~Lv~eGF~Vl 141 (267)
T CHL00162 84 EEAIRMAFLGRELAKQLGQEDNNFVKLEVISDPKYLL----------------------PDPIGTLKAAEFLVKKGFTVL 141 (267)
T ss_pred HHHHHHHHHHHHHhccccccCCCeEEEEEeCCCcccC----------------------CChHHHHHHHHHHHHCCCEEe
Confidence 44444444445544 56666666655544331 125689999999999987532
Q ss_pred EEecCCCchhHhhHHhhcc
Q 029874 157 IGIRYVGILNPCEHSIRSS 175 (186)
Q Consensus 157 iGvsn~~~~~l~~~~~~~~ 175 (186)
- -++ ....+++++.+.|
T Consensus 142 P-Y~~-~D~v~a~rLed~G 158 (267)
T CHL00162 142 P-YIN-ADPMLAKHLEDIG 158 (267)
T ss_pred e-cCC-CCHHHHHHHHHcC
Confidence 1 111 3344677776665
Done!