Query 029875
Match_columns 186
No_of_seqs 136 out of 1576
Neff 9.3
Searched_HMMs 46136
Date Fri Mar 29 05:02:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029875.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029875hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0084 GTPase Rab1/YPT1, smal 100.0 2.2E-35 4.8E-40 214.2 15.0 145 2-146 33-181 (205)
2 KOG0094 GTPase Rab6/YPT6/Ryh1, 100.0 5.3E-34 1.1E-38 206.6 13.5 140 2-141 46-189 (221)
3 smart00176 RAN Ran (Ras-relate 100.0 6.3E-33 1.4E-37 208.7 19.9 180 3-182 20-199 (200)
4 KOG0078 GTP-binding protein SE 100.0 2.6E-33 5.7E-38 205.9 14.1 141 2-142 36-179 (207)
5 PLN03071 GTP-binding nuclear p 100.0 6.2E-32 1.3E-36 206.2 20.7 181 3-183 38-218 (219)
6 KOG0092 GTPase Rab5/YPT51 and 100.0 4.7E-32 1E-36 196.2 14.6 140 2-141 29-171 (200)
7 KOG0394 Ras-related GTPase [Ge 100.0 7E-32 1.5E-36 193.8 12.2 140 2-141 33-182 (210)
8 KOG0080 GTPase Rab18, small G 100.0 1E-31 2.2E-36 189.0 12.4 145 2-146 35-183 (209)
9 KOG0098 GTPase Rab2, small G p 100.0 3.3E-32 7.1E-37 195.9 10.1 139 3-141 31-172 (216)
10 KOG0079 GTP-binding protein H- 100.0 5.9E-32 1.3E-36 187.9 10.6 139 2-140 32-172 (198)
11 KOG0093 GTPase Rab3, small G p 100.0 2.2E-31 4.7E-36 184.9 10.7 139 3-141 46-187 (193)
12 KOG0087 GTPase Rab11/YPT3, sma 100.0 1.4E-30 3E-35 191.0 13.0 138 2-139 38-178 (222)
13 cd04120 Rab12 Rab12 subfamily. 100.0 5.8E-30 1.2E-34 192.9 16.7 139 2-140 24-166 (202)
14 cd04121 Rab40 Rab40 subfamily. 100.0 5.5E-30 1.2E-34 191.2 16.3 138 3-140 31-170 (189)
15 cd04133 Rop_like Rop subfamily 100.0 7.5E-30 1.6E-34 188.5 16.8 136 2-138 25-174 (176)
16 PTZ00099 rab6; Provisional 100.0 2E-29 4.3E-34 186.3 16.6 141 2-142 4-147 (176)
17 KOG0083 GTPase Rab26/Rab37, sm 100.0 7.3E-31 1.6E-35 179.7 8.1 138 3-140 23-163 (192)
18 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 100.0 2.8E-29 6E-34 186.5 16.0 134 3-137 30-180 (182)
19 KOG0096 GTPase Ran/TC4/GSP1 (n 100.0 1.6E-29 3.4E-34 182.4 12.5 183 2-185 34-216 (216)
20 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 100.0 1.6E-28 3.6E-33 188.2 16.7 137 2-139 37-190 (232)
21 cd01875 RhoG RhoG subfamily. 100.0 1.8E-28 3.8E-33 183.5 16.3 137 2-139 27-179 (191)
22 cd04131 Rnd Rnd subfamily. Th 100.0 1.9E-28 4E-33 181.5 16.1 134 3-137 26-176 (178)
23 cd00877 Ran Ran (Ras-related n 100.0 8E-28 1.7E-32 176.0 17.7 140 3-142 25-164 (166)
24 cd04128 Spg1 Spg1p. Spg1p (se 100.0 5.7E-28 1.2E-32 179.4 16.0 138 3-141 25-170 (182)
25 PTZ00132 GTP-binding nuclear p 100.0 5.2E-27 1.1E-31 178.5 21.4 181 3-183 34-214 (215)
26 KOG0091 GTPase Rab39, small G 100.0 3.7E-29 8.1E-34 176.6 7.6 137 3-139 33-175 (213)
27 KOG0086 GTPase Rab4, small G p 100.0 8.5E-29 1.8E-33 173.1 8.9 139 3-141 34-175 (214)
28 cd01874 Cdc42 Cdc42 subfamily. 100.0 3.1E-27 6.7E-32 174.4 16.4 133 3-136 26-174 (175)
29 cd01873 RhoBTB RhoBTB subfamil 100.0 2.2E-27 4.7E-32 178.1 15.6 131 3-135 33-194 (195)
30 KOG0081 GTPase Rab27, small G 100.0 2.9E-28 6.3E-33 171.5 9.7 137 2-138 33-182 (219)
31 KOG0088 GTPase Rab21, small G 100.0 8.8E-29 1.9E-33 174.0 7.0 141 3-143 38-181 (218)
32 cd04122 Rab14 Rab14 subfamily. 100.0 4.7E-27 1E-31 171.6 15.8 136 3-138 27-165 (166)
33 cd04107 Rab32_Rab38 Rab38/Rab3 100.0 6.5E-27 1.4E-31 176.2 16.4 138 3-140 25-171 (201)
34 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.9 7.8E-27 1.7E-31 171.8 15.5 137 3-140 27-167 (172)
35 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.9 8.1E-27 1.7E-31 178.0 15.9 138 2-140 25-179 (222)
36 cd01871 Rac1_like Rac1-like su 99.9 1E-26 2.3E-31 171.5 15.6 132 3-135 26-173 (174)
37 cd04108 Rab36_Rab34 Rab34/Rab3 99.9 1.2E-26 2.5E-31 170.6 15.4 137 3-139 25-167 (170)
38 PF00071 Ras: Ras family; Int 99.9 1.6E-26 3.4E-31 167.8 15.2 136 2-137 23-161 (162)
39 cd04117 Rab15 Rab15 subfamily. 99.9 2.3E-26 5.1E-31 167.4 15.2 133 3-135 25-160 (161)
40 cd01865 Rab3 Rab3 subfamily. 99.9 3.1E-26 6.7E-31 167.2 15.8 136 3-138 26-164 (165)
41 cd04134 Rho3 Rho3 subfamily. 99.9 8E-26 1.7E-30 168.8 16.9 137 3-140 25-177 (189)
42 cd04110 Rab35 Rab35 subfamily. 99.9 8E-26 1.7E-30 170.1 17.0 138 3-140 31-170 (199)
43 cd04127 Rab27A Rab27a subfamil 99.9 4.2E-26 9.2E-31 168.5 15.0 136 3-138 29-178 (180)
44 cd01867 Rab8_Rab10_Rab13_like 99.9 6.2E-26 1.3E-30 165.9 15.3 137 2-138 27-166 (167)
45 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.9 7.8E-26 1.7E-30 165.0 15.8 135 3-137 27-164 (166)
46 cd04109 Rab28 Rab28 subfamily. 99.9 8.7E-26 1.9E-30 171.8 15.9 138 2-139 24-168 (215)
47 cd04124 RabL2 RabL2 subfamily. 99.9 1.8E-25 3.9E-30 162.6 16.1 135 3-138 25-159 (161)
48 cd04136 Rap_like Rap-like subf 99.9 1.1E-25 2.4E-30 163.3 14.7 133 3-136 26-162 (163)
49 cd04119 RJL RJL (RabJ-Like) su 99.9 1.4E-25 2.9E-30 163.2 15.1 135 3-137 25-167 (168)
50 KOG0393 Ras-related small GTPa 99.9 8.4E-26 1.8E-30 166.7 13.7 139 2-141 28-183 (198)
51 KOG0097 GTPase Rab14, small G 99.9 1.6E-26 3.5E-31 160.0 9.1 132 8-139 41-175 (215)
52 cd04144 Ras2 Ras2 subfamily. 99.9 2.1E-25 4.4E-30 166.7 15.5 138 3-141 24-167 (190)
53 smart00174 RHO Rho (Ras homolo 99.9 3.5E-25 7.7E-30 162.6 16.4 135 3-138 23-173 (174)
54 cd04116 Rab9 Rab9 subfamily. 99.9 2.8E-25 6E-30 162.7 15.4 134 3-136 30-170 (170)
55 cd04106 Rab23_lke Rab23-like s 99.9 2.1E-25 4.6E-30 161.8 14.5 133 3-135 25-161 (162)
56 KOG0095 GTPase Rab30, small G 99.9 2.8E-26 6.1E-31 160.0 9.1 134 5-138 34-170 (213)
57 PTZ00369 Ras-like protein; Pro 99.9 2.9E-25 6.4E-30 165.7 15.3 136 3-139 30-169 (189)
58 cd04112 Rab26 Rab26 subfamily. 99.9 3.2E-25 6.9E-30 165.8 15.3 137 5-141 28-167 (191)
59 cd04175 Rap1 Rap1 subgroup. T 99.9 3.7E-25 8.1E-30 161.1 15.0 134 3-137 26-163 (164)
60 PLN03110 Rab GTPase; Provision 99.9 3.8E-25 8.2E-30 168.5 15.4 137 3-139 37-176 (216)
61 cd04125 RabA_like RabA-like su 99.9 7.8E-25 1.7E-29 163.1 16.7 137 3-139 25-164 (188)
62 cd04126 Rab20 Rab20 subfamily. 99.9 4.2E-25 9.1E-30 168.4 15.4 131 6-140 27-193 (220)
63 cd01868 Rab11_like Rab11-like. 99.9 5.4E-25 1.2E-29 160.3 15.0 134 3-136 28-164 (165)
64 cd04176 Rap2 Rap2 subgroup. T 99.9 6.8E-25 1.5E-29 159.4 15.1 133 3-136 26-162 (163)
65 cd04132 Rho4_like Rho4-like su 99.9 5.8E-25 1.3E-29 163.5 14.7 137 3-140 25-170 (187)
66 cd04111 Rab39 Rab39 subfamily. 99.9 7.1E-25 1.5E-29 166.4 15.2 138 3-140 27-169 (211)
67 cd04101 RabL4 RabL4 (Rab-like4 99.9 7.7E-25 1.7E-29 159.2 14.8 134 3-136 27-163 (164)
68 cd04118 Rab24 Rab24 subfamily. 99.9 1.9E-24 4E-29 161.6 16.3 135 6-140 29-169 (193)
69 cd04130 Wrch_1 Wrch-1 subfamil 99.9 2.7E-24 6E-29 158.1 16.6 131 3-134 25-171 (173)
70 cd01864 Rab19 Rab19 subfamily. 99.9 1.3E-24 2.8E-29 158.4 14.6 133 3-135 28-164 (165)
71 cd01866 Rab2 Rab2 subfamily. 99.9 2.5E-24 5.5E-29 157.6 16.1 136 3-138 29-167 (168)
72 cd04138 H_N_K_Ras_like H-Ras/N 99.9 2.2E-24 4.9E-29 155.9 15.5 133 3-136 26-161 (162)
73 cd04140 ARHI_like ARHI subfami 99.9 3E-24 6.4E-29 156.7 15.3 131 3-134 26-162 (165)
74 cd04113 Rab4 Rab4 subfamily. 99.9 3.2E-24 7E-29 155.6 14.6 134 3-136 25-161 (161)
75 cd04115 Rab33B_Rab33A Rab33B/R 99.9 6.7E-24 1.5E-28 155.6 15.4 134 3-136 27-168 (170)
76 cd04145 M_R_Ras_like M-Ras/R-R 99.9 6.5E-24 1.4E-28 154.1 15.2 133 3-136 27-163 (164)
77 smart00175 RAB Rab subfamily o 99.9 8E-24 1.7E-28 153.5 15.6 136 3-138 25-163 (164)
78 PLN03108 Rab family protein; P 99.9 5.7E-24 1.2E-28 161.3 15.1 137 3-139 31-170 (210)
79 smart00173 RAS Ras subfamily o 99.9 8.6E-24 1.9E-28 153.7 14.9 134 3-137 25-162 (164)
80 cd01863 Rab18 Rab18 subfamily. 99.9 1.4E-23 3.1E-28 152.1 16.0 132 4-135 26-160 (161)
81 KOG0395 Ras-related GTPase [Ge 99.9 8.5E-24 1.8E-28 158.3 14.9 135 3-138 28-166 (196)
82 cd01861 Rab6 Rab6 subfamily. 99.9 1.1E-23 2.5E-28 152.5 15.0 133 3-135 25-160 (161)
83 cd04142 RRP22 RRP22 subfamily. 99.9 1.8E-23 3.9E-28 157.2 16.4 139 2-140 24-177 (198)
84 cd04103 Centaurin_gamma Centau 99.9 1.3E-23 2.8E-28 152.6 15.0 125 4-135 26-157 (158)
85 cd04143 Rhes_like Rhes_like su 99.9 1.2E-23 2.6E-28 163.1 15.0 133 3-136 25-170 (247)
86 cd04135 Tc10 TC10 subfamily. 99.9 4.9E-23 1.1E-27 151.2 16.5 133 3-136 25-173 (174)
87 cd01892 Miro2 Miro2 subfamily. 99.9 2.6E-23 5.6E-28 152.6 15.0 133 5-138 32-167 (169)
88 cd01860 Rab5_related Rab5-rela 99.9 3.7E-23 8E-28 150.1 15.6 133 4-136 27-162 (163)
89 PLN03118 Rab family protein; P 99.9 4.1E-23 8.8E-28 156.7 16.3 137 5-141 40-181 (211)
90 cd04158 ARD1 ARD1 subfamily. 99.9 1.1E-23 2.4E-28 154.5 12.6 133 6-142 26-166 (169)
91 PLN00223 ADP-ribosylation fact 99.9 7.5E-24 1.6E-28 157.2 11.5 129 6-138 44-179 (181)
92 cd01862 Rab7 Rab7 subfamily. 99.9 5.4E-23 1.2E-27 150.4 15.4 137 3-139 25-169 (172)
93 cd04149 Arf6 Arf6 subfamily. 99.9 5.7E-24 1.2E-28 156.0 9.8 125 6-134 36-167 (168)
94 cd04177 RSR1 RSR1 subgroup. R 99.9 9.5E-23 2.1E-27 149.1 15.5 134 3-137 26-164 (168)
95 cd01870 RhoA_like RhoA-like su 99.9 1.3E-22 2.7E-27 149.1 15.8 133 3-136 26-174 (175)
96 cd04146 RERG_RasL11_like RERG/ 99.9 7.3E-23 1.6E-27 149.2 14.4 133 4-137 25-164 (165)
97 smart00177 ARF ARF-like small 99.9 3E-23 6.5E-28 153.1 12.2 127 6-136 40-173 (175)
98 cd04150 Arf1_5_like Arf1-Arf5- 99.9 2.1E-23 4.6E-28 151.6 10.6 125 6-134 27-158 (159)
99 cd04148 RGK RGK subfamily. Th 99.9 3.4E-22 7.3E-27 152.7 17.5 136 5-142 28-168 (221)
100 cd04162 Arl9_Arfrp2_like Arl9/ 99.9 2E-23 4.3E-28 152.5 9.2 128 3-134 24-163 (164)
101 cd04114 Rab30 Rab30 subfamily. 99.9 4.9E-22 1.1E-26 145.1 16.0 133 4-136 33-168 (169)
102 cd04123 Rab21 Rab21 subfamily. 99.9 5.4E-22 1.2E-26 143.4 15.7 134 3-136 25-161 (162)
103 cd04129 Rho2 Rho2 subfamily. 99.9 1.1E-21 2.3E-26 146.2 16.5 137 3-140 26-176 (187)
104 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.9 2.8E-22 6E-27 148.9 11.7 134 6-139 30-172 (183)
105 PTZ00133 ADP-ribosylation fact 99.9 2.6E-22 5.7E-27 149.0 11.5 130 6-139 44-180 (182)
106 cd04139 RalA_RalB RalA/RalB su 99.9 1.4E-21 3E-26 141.6 15.0 135 3-138 25-163 (164)
107 cd00154 Rab Rab family. Rab G 99.9 1.1E-21 2.3E-26 140.8 13.9 131 3-133 25-158 (159)
108 cd04154 Arl2 Arl2 subfamily. 99.9 3.2E-22 7E-27 147.0 10.5 125 6-134 41-172 (173)
109 cd04147 Ras_dva Ras-dva subfam 99.9 2.1E-21 4.5E-26 145.9 15.0 135 3-138 24-164 (198)
110 KOG4252 GTP-binding protein [S 99.9 1.4E-24 3.1E-29 155.7 -2.2 137 3-139 45-183 (246)
111 cd04157 Arl6 Arl6 subfamily. 99.9 3.4E-22 7.3E-27 144.8 10.2 127 4-134 26-161 (162)
112 cd04102 RabL3 RabL3 (Rab-like3 99.9 1.6E-21 3.4E-26 146.9 12.8 121 3-123 25-176 (202)
113 cd00157 Rho Rho (Ras homology) 99.9 1.3E-20 2.9E-25 137.6 15.5 130 4-134 26-170 (171)
114 cd04160 Arfrp1 Arfrp1 subfamil 99.9 1.6E-21 3.4E-26 142.1 10.4 126 5-134 32-166 (167)
115 cd00876 Ras Ras family. The R 99.9 1E-20 2.2E-25 136.4 13.7 133 3-136 24-160 (160)
116 cd04161 Arl2l1_Arl13_like Arl2 99.9 2.9E-21 6.4E-26 141.4 10.1 128 3-134 23-166 (167)
117 cd01893 Miro1 Miro1 subfamily. 99.9 1.9E-20 4E-25 136.8 14.3 121 18-138 38-165 (166)
118 cd04137 RheB Rheb (Ras Homolog 99.9 3E-20 6.6E-25 137.2 14.6 137 3-140 26-166 (180)
119 cd04151 Arl1 Arl1 subfamily. 99.9 6.9E-21 1.5E-25 137.9 10.8 125 6-134 26-157 (158)
120 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.9 7.2E-21 1.6E-25 140.1 11.0 125 6-134 42-173 (174)
121 cd04156 ARLTS1 ARLTS1 subfamil 99.9 3.4E-21 7.3E-26 139.5 9.1 126 6-134 26-159 (160)
122 PF00025 Arf: ADP-ribosylation 99.8 1.8E-20 3.9E-25 138.3 12.5 127 6-136 41-175 (175)
123 cd01890 LepA LepA subfamily. 99.8 1.2E-20 2.7E-25 139.0 11.3 124 10-136 45-176 (179)
124 KOG0070 GTP-binding ADP-ribosy 99.8 7.1E-20 1.5E-24 132.4 13.4 129 6-138 44-179 (181)
125 PLN00023 GTP-binding protein; 99.8 4.7E-20 1E-24 146.2 12.8 110 3-112 46-189 (334)
126 cd00878 Arf_Arl Arf (ADP-ribos 99.8 3.8E-20 8.3E-25 133.7 11.1 126 5-134 25-157 (158)
127 cd00879 Sar1 Sar1 subfamily. 99.8 3E-20 6.6E-25 138.4 10.3 127 6-136 46-190 (190)
128 smart00178 SAR Sar1p-like memb 99.8 1.4E-19 2.9E-24 134.6 10.3 126 6-135 44-183 (184)
129 cd04159 Arl10_like Arl10-like 99.8 3.5E-19 7.5E-24 127.8 11.2 128 3-134 24-158 (159)
130 KOG0073 GTP-binding ADP-ribosy 99.8 1.2E-18 2.6E-23 123.5 12.2 129 6-138 43-179 (185)
131 KOG0071 GTP-binding ADP-ribosy 99.8 2.8E-18 6.1E-23 118.7 10.9 132 2-137 40-178 (180)
132 KOG1673 Ras GTPases [General f 99.8 3.5E-18 7.6E-23 120.2 10.5 138 3-140 45-189 (205)
133 cd01897 NOG NOG1 is a nucleola 99.8 6.6E-18 1.4E-22 123.1 12.4 113 25-137 45-168 (168)
134 KOG0075 GTP-binding ADP-ribosy 99.8 3.9E-18 8.4E-23 118.9 9.8 132 2-137 44-182 (186)
135 cd04155 Arl3 Arl3 subfamily. 99.8 5.7E-18 1.2E-22 124.1 10.4 122 6-134 41-172 (173)
136 KOG4423 GTP-binding protein-li 99.8 4.7E-20 1E-24 133.2 -1.6 140 2-141 49-198 (229)
137 cd04171 SelB SelB subfamily. 99.7 3.1E-17 6.7E-22 118.7 11.2 121 8-134 33-163 (164)
138 TIGR01393 lepA GTP-binding pro 99.7 4.3E-17 9.3E-22 140.2 11.9 125 11-138 49-181 (595)
139 COG1100 GTPase SAR1 and relate 99.7 1.4E-16 2.9E-21 121.1 13.1 137 3-139 30-187 (219)
140 cd01898 Obg Obg subfamily. Th 99.7 9.9E-17 2.2E-21 117.0 11.7 109 27-135 48-169 (170)
141 cd01891 TypA_BipA TypA (tyrosi 99.7 4.4E-17 9.4E-22 122.0 9.2 118 8-128 46-173 (194)
142 KOG0076 GTP-binding ADP-ribosy 99.7 1.4E-17 3.1E-22 119.1 5.8 130 6-139 52-189 (197)
143 cd00882 Ras_like_GTPase Ras-li 99.7 4.2E-16 9E-21 109.9 13.1 128 5-133 24-156 (157)
144 TIGR00231 small_GTP small GTP- 99.7 3.8E-16 8.3E-21 111.3 13.0 131 3-133 26-160 (161)
145 cd01879 FeoB Ferrous iron tran 99.7 3.5E-16 7.6E-21 112.6 12.8 123 7-136 25-156 (158)
146 TIGR02528 EutP ethanolamine ut 99.7 3.8E-17 8.2E-22 116.1 7.1 109 6-133 26-141 (142)
147 PRK15494 era GTPase Era; Provi 99.7 7.8E-16 1.7E-20 124.5 13.5 152 7-167 84-246 (339)
148 KOG0072 GTP-binding ADP-ribosy 99.7 2.3E-16 5.1E-21 109.7 8.4 130 5-138 44-180 (182)
149 KOG3883 Ras family small GTPas 99.7 2.3E-15 5E-20 105.8 12.1 137 3-140 36-178 (198)
150 PRK12299 obgE GTPase CgtA; Rev 99.7 1.1E-15 2.3E-20 123.3 11.7 113 27-139 206-330 (335)
151 cd01878 HflX HflX subfamily. 99.6 1.1E-15 2.4E-20 115.2 9.9 123 7-136 72-204 (204)
152 PRK05433 GTP-binding protein L 99.6 9.5E-16 2.1E-20 132.0 10.4 113 23-138 70-185 (600)
153 COG2229 Predicted GTPase [Gene 99.6 2.1E-15 4.5E-20 109.2 9.8 123 8-135 52-176 (187)
154 cd01887 IF2_eIF5B IF2/eIF5B (i 99.6 6.5E-15 1.4E-19 107.1 11.6 110 25-137 48-166 (168)
155 cd01889 SelB_euk SelB subfamil 99.6 3.1E-15 6.7E-20 111.8 10.0 127 8-137 39-186 (192)
156 TIGR00436 era GTP-binding prot 99.6 4.8E-15 1E-19 116.5 11.5 135 27-165 48-192 (270)
157 cd01881 Obg_like The Obg-like 99.6 3.7E-15 8E-20 109.1 9.2 110 26-135 43-175 (176)
158 TIGR02729 Obg_CgtA Obg family 99.6 9.3E-15 2E-19 117.7 12.2 111 26-136 204-328 (329)
159 TIGR00450 mnmE_trmE_thdF tRNA 99.6 1.7E-14 3.8E-19 120.2 13.3 121 8-139 234-362 (442)
160 cd01894 EngA1 EngA1 subfamily. 99.6 1.8E-14 3.8E-19 103.4 11.4 116 13-136 33-157 (157)
161 PRK04213 GTP-binding protein; 99.6 3.1E-15 6.6E-20 112.4 7.2 106 28-139 53-194 (201)
162 TIGR00475 selB selenocysteine- 99.6 1.8E-14 4E-19 123.8 12.8 129 4-140 29-169 (581)
163 PRK03003 GTP-binding protein D 99.6 7.3E-15 1.6E-19 123.8 10.0 128 6-138 240-383 (472)
164 PRK03003 GTP-binding protein D 99.6 2.9E-14 6.3E-19 120.2 12.3 124 7-138 68-200 (472)
165 cd01888 eIF2_gamma eIF2-gamma 99.6 1.1E-14 2.4E-19 109.8 8.8 107 27-138 83-200 (203)
166 PRK05291 trmE tRNA modificatio 99.6 3.3E-14 7.2E-19 119.0 12.1 117 9-138 247-371 (449)
167 TIGR03156 GTP_HflX GTP-binding 99.6 2.9E-14 6.4E-19 115.7 11.3 120 8-135 221-350 (351)
168 TIGR00487 IF-2 translation ini 99.6 5.2E-14 1.1E-18 120.8 13.1 121 9-134 118-247 (587)
169 CHL00189 infB translation init 99.6 2.3E-14 5E-19 125.1 10.5 124 10-136 278-409 (742)
170 KOG0074 GTP-binding ADP-ribosy 99.6 1.3E-14 2.8E-19 100.8 7.0 128 6-136 44-178 (185)
171 cd04164 trmE TrmE (MnmE, ThdF, 99.6 8.9E-14 1.9E-18 99.6 11.6 117 8-136 32-156 (157)
172 PRK12297 obgE GTPase CgtA; Rev 99.5 1.1E-13 2.4E-18 114.5 13.5 114 26-141 205-331 (424)
173 TIGR00437 feoB ferrous iron tr 99.5 9.1E-14 2E-18 119.7 13.4 124 6-136 22-154 (591)
174 PRK15467 ethanolamine utilizat 99.5 8.6E-15 1.9E-19 106.3 6.1 103 31-139 41-149 (158)
175 cd00881 GTP_translation_factor 99.5 5.3E-14 1.2E-18 104.0 10.3 110 25-137 60-187 (189)
176 TIGR03594 GTPase_EngA ribosome 99.5 1.5E-13 3.3E-18 114.5 13.4 121 13-138 208-345 (429)
177 PRK05306 infB translation init 99.5 2.1E-13 4.5E-18 120.0 12.9 112 18-135 330-450 (787)
178 PF08477 Miro: Miro-like prote 99.5 1.1E-13 2.3E-18 95.4 8.7 87 7-93 30-119 (119)
179 COG0481 LepA Membrane GTPase L 99.5 2.6E-13 5.6E-18 111.0 12.0 134 2-138 50-187 (603)
180 PRK12298 obgE GTPase CgtA; Rev 99.5 3.7E-13 8E-18 110.6 13.0 140 27-166 207-362 (390)
181 TIGR00157 ribosome small subun 99.5 1.7E-13 3.6E-18 106.3 9.6 97 37-135 23-121 (245)
182 PF00009 GTP_EFTU: Elongation 99.5 2E-13 4.4E-18 101.7 9.1 111 24-137 67-187 (188)
183 PRK10218 GTP-binding protein; 99.5 7.9E-13 1.7E-17 113.8 12.5 127 8-137 49-195 (607)
184 PRK11058 GTPase HflX; Provisio 99.5 9.7E-13 2.1E-17 109.3 12.5 121 14-138 233-363 (426)
185 KOG0462 Elongation factor-type 99.5 1.1E-12 2.3E-17 109.0 12.3 127 8-138 107-236 (650)
186 TIGR01394 TypA_BipA GTP-bindin 99.5 3.4E-13 7.4E-18 116.1 9.5 125 11-138 48-192 (594)
187 PRK12296 obgE GTPase CgtA; Rev 99.5 1.5E-12 3.2E-17 109.4 12.9 116 25-140 204-343 (500)
188 TIGR00491 aIF-2 translation in 99.4 5.2E-13 1.1E-17 114.6 10.3 102 28-135 70-214 (590)
189 PRK00093 GTP-binding protein D 99.4 9.1E-13 2E-17 110.1 11.3 118 9-136 33-161 (435)
190 TIGR00483 EF-1_alpha translati 99.4 7.8E-13 1.7E-17 110.3 10.4 119 8-129 68-199 (426)
191 PRK12317 elongation factor 1-a 99.4 9.5E-13 2.1E-17 109.7 10.7 106 23-129 80-197 (425)
192 cd01895 EngA2 EngA2 subfamily. 99.4 4.1E-12 9E-17 92.2 12.8 118 13-135 38-173 (174)
193 PRK00089 era GTPase Era; Revie 99.4 1.7E-12 3.6E-17 103.2 10.7 137 25-165 51-199 (292)
194 cd00880 Era_like Era (E. coli 99.4 3.7E-12 8E-17 90.6 11.0 107 26-135 44-162 (163)
195 PRK09518 bifunctional cytidyla 99.4 2E-12 4.4E-17 113.9 11.3 126 9-139 482-623 (712)
196 PRK09518 bifunctional cytidyla 99.4 2.9E-12 6.3E-17 112.9 11.7 122 9-138 307-437 (712)
197 TIGR03594 GTPase_EngA ribosome 99.4 7.7E-12 1.7E-16 104.3 11.8 119 11-139 33-162 (429)
198 PRK00454 engB GTP-binding prot 99.4 8.3E-12 1.8E-16 93.1 10.7 125 6-138 52-195 (196)
199 PRK00093 GTP-binding protein D 99.4 1.4E-11 3.1E-16 102.9 12.9 124 9-137 205-344 (435)
200 PRK10512 selenocysteinyl-tRNA- 99.3 1.3E-11 2.9E-16 106.8 12.3 122 7-137 34-166 (614)
201 cd04105 SR_beta Signal recogni 99.3 5.3E-12 1.1E-16 95.3 8.7 73 24-96 45-123 (203)
202 TIGR03598 GTPase_YsxC ribosome 99.3 6.8E-12 1.5E-16 92.7 8.9 115 6-126 46-179 (179)
203 PRK04004 translation initiatio 99.3 6.7E-12 1.5E-16 108.1 9.8 100 29-134 73-215 (586)
204 cd04163 Era Era subfamily. Er 99.3 2E-11 4.3E-16 87.8 10.9 110 23-135 47-167 (168)
205 cd04166 CysN_ATPS CysN_ATPS su 99.3 5.7E-12 1.2E-16 95.4 8.4 101 26-128 76-185 (208)
206 PRK09554 feoB ferrous iron tra 99.3 1.9E-11 4.1E-16 108.1 12.7 123 9-136 32-167 (772)
207 TIGR03680 eif2g_arch translati 99.3 4.2E-12 9.1E-17 105.3 7.9 111 26-137 79-196 (406)
208 COG0532 InfB Translation initi 99.3 1.6E-11 3.5E-16 102.1 10.5 105 27-136 55-169 (509)
209 PRK04000 translation initiatio 99.3 9.9E-12 2.1E-16 103.1 9.2 107 26-137 84-201 (411)
210 cd01883 EF1_alpha Eukaryotic e 99.3 5.9E-12 1.3E-16 96.1 7.3 100 25-126 75-194 (219)
211 PF02421 FeoB_N: Ferrous iron 99.3 3.2E-11 7E-16 86.9 9.8 113 13-132 35-156 (156)
212 COG1159 Era GTPase [General fu 99.3 2E-11 4.3E-16 95.2 9.1 143 25-170 52-205 (298)
213 PRK14845 translation initiatio 99.3 4.3E-11 9.3E-16 107.9 10.7 101 29-135 528-671 (1049)
214 cd04167 Snu114p Snu114p subfam 99.2 4.9E-11 1.1E-15 90.6 9.4 70 23-95 67-136 (213)
215 KOG1145 Mitochondrial translat 99.2 7.5E-11 1.6E-15 98.2 10.1 122 8-136 185-315 (683)
216 cd00066 G-alpha G protein alph 99.2 5.7E-11 1.2E-15 95.4 9.1 129 7-139 145-313 (317)
217 PRK13351 elongation factor G; 99.2 9.6E-11 2.1E-15 103.1 10.5 84 6-96 56-139 (687)
218 smart00275 G_alpha G protein a 99.2 7E-11 1.5E-15 95.8 8.8 130 6-139 167-336 (342)
219 cd01876 YihA_EngB The YihA (En 99.2 1.5E-10 3.2E-15 83.4 9.6 124 5-136 26-170 (170)
220 cd01896 DRG The developmentall 99.2 2.4E-10 5.1E-15 88.1 10.8 106 26-136 46-225 (233)
221 cd04168 TetM_like Tet(M)-like 99.2 1.1E-10 2.4E-15 90.2 8.6 95 15-112 52-146 (237)
222 PRK00741 prfC peptide chain re 99.2 1.9E-10 4E-15 98.1 10.5 82 12-96 64-145 (526)
223 cd04169 RF3 RF3 subfamily. Pe 99.2 1.9E-10 4.1E-15 90.3 9.4 96 19-117 63-158 (267)
224 cd04165 GTPBP1_like GTPBP1-lik 99.2 2.4E-10 5.3E-15 87.5 9.2 105 26-133 83-219 (224)
225 cd01885 EF2 EF2 (for archaea a 99.1 1.2E-10 2.7E-15 88.9 7.4 69 24-95 70-138 (222)
226 cd01884 EF_Tu EF-Tu subfamily. 99.1 4.5E-10 9.7E-15 84.3 10.2 101 23-126 61-172 (195)
227 PLN00043 elongation factor 1-a 99.1 2.4E-10 5.2E-15 95.7 9.5 102 23-127 81-203 (447)
228 PRK00098 GTPase RsgA; Reviewed 99.1 4.8E-10 1E-14 89.4 10.5 86 48-135 78-165 (298)
229 PRK12740 elongation factor G; 99.1 3E-10 6.6E-15 99.7 9.8 83 7-96 44-126 (668)
230 TIGR00485 EF-Tu translation el 99.1 3.9E-10 8.3E-15 93.3 9.6 100 21-123 69-179 (394)
231 cd01854 YjeQ_engC YjeQ/EngC. 99.1 1E-09 2.3E-14 87.0 11.4 87 46-134 74-161 (287)
232 PRK12736 elongation factor Tu; 99.1 5.8E-10 1.3E-14 92.2 10.3 113 22-137 70-201 (394)
233 PF10662 PduV-EutP: Ethanolami 99.1 3.3E-10 7.1E-15 80.2 7.2 111 5-133 26-142 (143)
234 cd01855 YqeH YqeH. YqeH is an 99.1 3.9E-10 8.5E-15 84.1 8.1 96 40-140 24-128 (190)
235 cd01859 MJ1464 MJ1464. This f 99.1 2.3E-10 4.9E-15 82.7 6.6 95 41-138 3-97 (156)
236 PRK12289 GTPase RsgA; Reviewed 99.1 6.3E-10 1.4E-14 90.3 9.0 96 39-136 78-174 (352)
237 TIGR00503 prfC peptide chain r 99.1 9.9E-10 2.2E-14 93.7 10.4 82 11-95 64-145 (527)
238 PRK09866 hypothetical protein; 99.1 8.2E-10 1.8E-14 94.5 9.7 128 6-135 210-351 (741)
239 TIGR02034 CysN sulfate adenyly 99.1 9.7E-10 2.1E-14 91.2 9.1 101 25-127 78-187 (406)
240 PRK12735 elongation factor Tu; 99.0 1.6E-09 3.5E-14 89.6 10.3 112 22-136 70-202 (396)
241 PTZ00327 eukaryotic translatio 99.0 8.8E-10 1.9E-14 92.4 8.2 109 27-137 117-233 (460)
242 KOG0077 Vesicle coat complex C 99.0 2.6E-10 5.6E-15 81.5 4.1 127 5-135 46-191 (193)
243 COG0486 ThdF Predicted GTPase 99.0 3.5E-09 7.5E-14 87.2 11.2 122 9-139 249-378 (454)
244 cd01899 Ygr210 Ygr210 subfamil 99.0 3.3E-09 7.2E-14 85.1 10.5 62 82-145 214-277 (318)
245 PF04670 Gtr1_RagA: Gtr1/RagA 99.0 1.9E-09 4.2E-14 82.6 8.3 127 8-138 32-177 (232)
246 PRK05124 cysN sulfate adenylyl 99.0 1.1E-09 2.3E-14 92.6 7.5 102 25-128 105-216 (474)
247 PRK13768 GTPase; Provisional 99.0 2.2E-09 4.8E-14 83.7 7.8 111 28-138 98-248 (253)
248 COG1160 Predicted GTPases [Gen 99.0 2.3E-08 5E-13 82.2 13.8 121 13-138 214-352 (444)
249 KOG1707 Predicted Ras related/ 99.0 2.2E-09 4.7E-14 90.1 7.6 116 25-140 54-178 (625)
250 COG1217 TypA Predicted membran 98.9 8.6E-09 1.9E-13 84.7 10.4 126 11-139 52-197 (603)
251 COG2895 CysN GTPases - Sulfate 98.9 7.1E-09 1.5E-13 82.6 9.5 107 14-126 75-192 (431)
252 TIGR03597 GTPase_YqeH ribosome 98.9 2.4E-09 5.2E-14 87.5 7.1 94 37-135 50-151 (360)
253 COG1160 Predicted GTPases [Gen 98.9 5.6E-09 1.2E-13 85.8 9.1 115 14-137 40-165 (444)
254 PRK12288 GTPase RsgA; Reviewed 98.9 6.5E-09 1.4E-13 84.4 9.3 87 48-136 118-207 (347)
255 cd01886 EF-G Elongation factor 98.9 4.9E-09 1.1E-13 82.5 8.2 95 25-122 62-160 (270)
256 KOG1489 Predicted GTP-binding 98.9 1.9E-08 4.2E-13 79.1 10.7 105 29-134 246-364 (366)
257 cd04170 EF-G_bact Elongation f 98.9 9.9E-09 2.1E-13 80.6 9.0 110 25-137 62-173 (268)
258 PRK05506 bifunctional sulfate 98.9 1.1E-08 2.4E-13 89.3 9.3 101 25-127 102-211 (632)
259 PTZ00141 elongation factor 1- 98.9 1.8E-08 3.9E-13 84.6 9.8 103 23-127 81-203 (446)
260 CHL00071 tufA elongation facto 98.9 1.8E-08 4E-13 83.7 9.7 98 25-125 73-181 (409)
261 cd01850 CDC_Septin CDC/Septin. 98.9 3.3E-08 7.2E-13 78.0 10.7 112 6-121 42-186 (276)
262 TIGR00484 EF-G translation elo 98.8 1.2E-08 2.5E-13 90.0 8.7 95 25-122 73-171 (689)
263 PRK00049 elongation factor Tu; 98.8 3.2E-08 6.9E-13 81.9 10.8 111 22-135 70-201 (396)
264 PLN03126 Elongation factor Tu; 98.8 1.9E-08 4.1E-13 84.9 8.8 98 25-125 142-250 (478)
265 PRK12739 elongation factor G; 98.8 2.2E-08 4.8E-13 88.3 8.7 79 13-96 61-139 (691)
266 COG5256 TEF1 Translation elong 98.8 4.3E-08 9.4E-13 79.7 9.0 110 20-129 78-203 (428)
267 PLN03127 Elongation factor Tu; 98.8 7.6E-08 1.7E-12 80.8 10.8 111 23-136 120-251 (447)
268 KOG1423 Ras-like GTPase ERA [C 98.7 1.1E-07 2.4E-12 74.6 9.8 131 23-155 116-289 (379)
269 cd01858 NGP_1 NGP-1. Autoanti 98.7 5.4E-08 1.2E-12 70.4 7.4 91 46-137 4-95 (157)
270 cd01856 YlqF YlqF. Proteins o 98.7 1.9E-08 4.1E-13 73.8 5.0 92 41-137 10-101 (171)
271 TIGR00490 aEF-2 translation el 98.7 4.4E-08 9.6E-13 86.7 7.8 87 7-96 66-152 (720)
272 COG0370 FeoB Fe2+ transport sy 98.7 2.4E-07 5.1E-12 79.6 11.4 124 12-140 35-167 (653)
273 COG1084 Predicted GTPase [Gene 98.7 2.2E-07 4.8E-12 73.6 10.4 125 9-138 201-337 (346)
274 cd01857 HSR1_MMR1 HSR1/MMR1. 98.7 6.1E-08 1.3E-12 68.9 6.7 77 45-124 6-84 (141)
275 COG2262 HflX GTPases [General 98.7 2E-07 4.3E-12 75.8 9.9 112 24-140 239-359 (411)
276 cd01849 YlqF_related_GTPase Yl 98.6 1.8E-07 4E-12 67.4 8.3 82 52-136 1-84 (155)
277 TIGR03596 GTPase_YlqF ribosome 98.6 1.4E-07 3E-12 74.5 7.5 91 44-139 15-105 (276)
278 PF09439 SRPRB: Signal recogni 98.6 1.4E-07 3.1E-12 69.6 5.5 73 26-98 48-128 (181)
279 KOG0082 G-protein alpha subuni 98.5 1.7E-07 3.8E-12 75.5 5.9 129 7-139 179-346 (354)
280 KOG0090 Signal recognition par 98.5 9.5E-07 2.1E-11 66.0 8.7 69 28-96 83-159 (238)
281 cd04104 p47_IIGP_like p47 (47- 98.5 1.3E-06 2.7E-11 65.6 9.3 107 27-139 52-186 (197)
282 PRK00007 elongation factor G; 98.5 2.6E-07 5.7E-12 81.6 6.4 107 11-122 61-171 (693)
283 PRK09563 rbgA GTPase YlqF; Rev 98.5 5E-07 1.1E-11 71.7 7.5 90 44-138 18-107 (287)
284 PRK13796 GTPase YqeH; Provisio 98.5 1E-06 2.2E-11 72.2 9.1 83 49-136 67-158 (365)
285 KOG1144 Translation initiation 98.5 5.8E-07 1.3E-11 77.8 7.7 103 29-137 542-687 (1064)
286 PRK07560 elongation factor EF- 98.4 9.2E-07 2E-11 78.6 8.5 83 10-95 70-152 (731)
287 COG4917 EutP Ethanolamine util 98.4 2.4E-07 5.2E-12 63.6 3.7 114 4-134 25-143 (148)
288 PRK09602 translation-associate 98.4 4.4E-06 9.5E-11 69.2 11.0 65 82-148 217-282 (396)
289 COG0536 Obg Predicted GTPase [ 98.4 6.2E-06 1.3E-10 65.9 11.2 112 29-140 209-336 (369)
290 KOG1490 GTP-binding protein CR 98.4 1.7E-06 3.6E-11 72.1 8.2 115 24-138 212-342 (620)
291 COG0218 Predicted GTPase [Gene 98.4 7.4E-06 1.6E-10 60.9 10.6 105 29-138 72-198 (200)
292 KOG0458 Elongation factor 1 al 98.4 4.3E-06 9.3E-11 70.7 10.1 117 12-128 240-373 (603)
293 TIGR00101 ureG urease accessor 98.3 2.9E-06 6.2E-11 63.9 8.3 99 27-137 92-196 (199)
294 PRK09435 membrane ATPase/prote 98.3 2.3E-06 4.9E-11 69.1 7.9 104 26-139 148-262 (332)
295 KOG3886 GTP-binding protein [S 98.3 6E-07 1.3E-11 68.0 4.2 86 8-96 37-130 (295)
296 COG1163 DRG Predicted GTPase [ 98.3 1.6E-05 3.5E-10 63.2 11.2 109 24-137 107-289 (365)
297 PF00503 G-alpha: G-protein al 98.3 2.5E-06 5.5E-11 70.5 6.8 85 7-94 219-315 (389)
298 COG4108 PrfC Peptide chain rel 98.3 4.6E-06 9.9E-11 68.6 8.1 101 12-117 66-168 (528)
299 COG3276 SelB Selenocysteine-sp 98.2 5.5E-06 1.2E-10 68.1 8.3 124 8-137 35-162 (447)
300 PRK01889 GTPase RsgA; Reviewed 98.2 7.2E-06 1.6E-10 67.1 8.8 83 48-133 110-193 (356)
301 PF03029 ATP_bind_1: Conserved 98.2 1.3E-06 2.8E-11 67.6 4.0 106 28-136 92-236 (238)
302 KOG1707 Predicted Ras related/ 98.2 2.5E-05 5.5E-10 66.2 11.4 131 3-138 450-584 (625)
303 smart00010 small_GTPase Small 98.2 9.3E-07 2E-11 60.6 2.3 79 40-126 36-115 (124)
304 KOG1532 GTPase XAB1, interacts 98.2 8.3E-06 1.8E-10 63.5 7.4 112 26-139 115-266 (366)
305 TIGR00073 hypB hydrogenase acc 98.2 2.1E-05 4.6E-10 59.4 9.7 99 27-135 103-205 (207)
306 COG3596 Predicted GTPase [Gene 98.2 8.9E-06 1.9E-10 63.3 7.3 113 27-140 87-225 (296)
307 COG0480 FusA Translation elong 98.1 1.1E-05 2.3E-10 70.9 8.5 76 19-98 69-144 (697)
308 PLN00116 translation elongatio 98.1 6.1E-06 1.3E-10 74.5 6.5 68 25-95 96-163 (843)
309 KOG1191 Mitochondrial GTPase [ 98.1 1.5E-05 3.2E-10 66.4 8.0 126 13-140 304-453 (531)
310 cd01852 AIG1 AIG1 (avrRpt2-ind 98.1 0.00012 2.6E-09 54.8 12.3 112 27-140 49-187 (196)
311 TIGR00750 lao LAO/AO transport 98.1 1E-05 2.3E-10 64.6 6.5 102 26-137 126-238 (300)
312 COG5257 GCD11 Translation init 98.0 1.3E-05 2.8E-10 63.7 6.3 112 27-139 86-204 (415)
313 PF06858 NOG1: Nucleolar GTP-b 98.0 2.2E-05 4.8E-10 46.5 5.8 43 51-93 14-58 (58)
314 PF05783 DLIC: Dynein light in 98.0 6.4E-05 1.4E-09 63.5 10.6 135 5-139 49-266 (472)
315 PTZ00416 elongation factor 2; 98.0 1.2E-05 2.5E-10 72.6 5.8 67 26-95 91-157 (836)
316 KOG0468 U5 snRNP-specific prot 97.9 2E-05 4.4E-10 67.8 5.9 70 23-95 193-262 (971)
317 COG1162 Predicted GTPases [Gen 97.9 0.00011 2.4E-09 58.2 9.6 100 38-139 67-169 (301)
318 KOG3905 Dynein light intermedi 97.8 0.00026 5.5E-09 56.6 9.8 133 6-138 77-291 (473)
319 KOG0461 Selenocysteine-specifi 97.7 0.00016 3.5E-09 58.1 7.6 110 23-139 66-195 (522)
320 KOG0465 Mitochondrial elongati 97.7 0.00039 8.4E-09 59.6 9.2 108 25-139 102-211 (721)
321 PF01926 MMR_HSR1: 50S ribosom 97.6 0.00035 7.5E-09 47.6 7.5 67 19-91 41-116 (116)
322 COG0050 TufB GTPases - transla 97.6 0.0002 4.4E-09 56.4 6.1 95 23-120 71-176 (394)
323 cd01882 BMS1 Bms1. Bms1 is an 97.5 0.00049 1.1E-08 52.7 7.5 94 25-124 81-183 (225)
324 KOG1143 Predicted translation 97.5 0.00066 1.4E-08 55.3 7.9 108 26-137 248-387 (591)
325 COG5258 GTPBP1 GTPase [General 97.4 0.00076 1.6E-08 55.1 7.9 107 27-137 201-338 (527)
326 TIGR02836 spore_IV_A stage IV 97.4 0.0062 1.3E-07 50.7 13.1 118 17-136 80-236 (492)
327 KOG0705 GTPase-activating prot 97.4 0.00074 1.6E-08 57.3 7.8 119 16-139 66-191 (749)
328 PF00350 Dynamin_N: Dynamin fa 97.4 0.00022 4.8E-09 51.6 3.9 64 27-92 101-168 (168)
329 KOG0464 Elongation factor G [T 97.3 0.0011 2.5E-08 54.6 7.3 83 12-97 87-169 (753)
330 cd03110 Fer4_NifH_child This p 97.3 0.0018 3.9E-08 47.5 7.6 86 25-116 91-176 (179)
331 smart00053 DYNc Dynamin, GTPas 97.2 0.00077 1.7E-08 52.2 5.1 70 26-97 124-207 (240)
332 KOG0099 G protein subunit Galp 97.1 0.0011 2.3E-08 51.7 5.5 71 25-95 200-282 (379)
333 KOG0085 G protein subunit Galp 97.1 0.00015 3.2E-09 55.3 0.8 130 7-140 183-352 (359)
334 KOG0463 GTP-binding protein GP 97.1 0.0045 9.8E-08 50.6 8.5 107 26-136 218-356 (641)
335 KOG0459 Polypeptide release fa 96.9 0.0025 5.4E-08 52.4 6.2 106 25-130 155-279 (501)
336 cd04178 Nucleostemin_like Nucl 96.9 0.0034 7.3E-08 46.1 6.3 45 52-97 1-45 (172)
337 COG1161 Predicted GTPases [Gen 96.9 0.001 2.3E-08 53.7 3.7 93 33-130 16-110 (322)
338 COG0378 HypB Ni2+-binding GTPa 96.7 0.0028 6E-08 47.2 4.6 98 27-136 97-200 (202)
339 KOG0460 Mitochondrial translat 96.7 0.005 1.1E-07 49.7 6.2 106 14-123 106-224 (449)
340 KOG0467 Translation elongation 96.7 0.0041 8.8E-08 54.7 5.9 80 10-93 55-135 (887)
341 KOG1424 Predicted GTP-binding 96.6 0.0022 4.8E-08 54.0 3.7 71 45-121 169-244 (562)
342 PRK10463 hydrogenase nickel in 96.6 0.0039 8.4E-08 49.5 4.7 54 82-135 230-287 (290)
343 COG1703 ArgK Putative periplas 96.5 0.014 3E-07 46.4 7.4 103 27-139 144-256 (323)
344 KOG0466 Translation initiation 96.5 0.0026 5.5E-08 50.6 3.2 109 27-140 125-244 (466)
345 KOG3887 Predicted small GTPase 96.4 0.029 6.2E-07 43.4 8.3 111 25-137 73-202 (347)
346 PF03308 ArgK: ArgK protein; 96.4 0.004 8.7E-08 48.5 3.7 84 48-138 140-231 (266)
347 TIGR00991 3a0901s02IAP34 GTP-b 96.3 0.015 3.2E-07 46.7 6.7 69 26-95 85-166 (313)
348 COG3640 CooC CO dehydrogenase 96.2 0.036 7.8E-07 42.6 8.0 64 27-95 134-198 (255)
349 PTZ00258 GTP-binding protein; 96.2 0.035 7.6E-07 46.0 8.6 41 82-122 220-265 (390)
350 PF04548 AIG1: AIG1 family; I 96.0 0.035 7.7E-07 42.0 7.2 126 10-141 36-190 (212)
351 KOG2484 GTPase [General functi 96.0 0.006 1.3E-07 50.0 3.0 62 40-102 136-197 (435)
352 KOG1954 Endocytosis/signaling 95.7 0.0089 1.9E-07 48.8 2.9 69 28-98 148-227 (532)
353 cd01853 Toc34_like Toc34-like 95.6 0.056 1.2E-06 42.1 7.0 69 27-96 79-163 (249)
354 PHA02518 ParA-like protein; Pr 95.4 0.052 1.1E-06 40.6 6.1 68 25-94 75-145 (211)
355 TIGR00064 ftsY signal recognit 95.1 0.11 2.4E-06 41.0 7.2 96 25-129 153-260 (272)
356 KOG4273 Uncharacterized conser 95.1 0.2 4.3E-06 39.1 8.2 88 49-137 77-222 (418)
357 cd02038 FleN-like FleN is a me 95.0 0.079 1.7E-06 37.3 5.6 65 27-94 45-109 (139)
358 PRK10416 signal recognition pa 94.9 0.15 3.3E-06 41.2 7.6 96 25-129 195-302 (318)
359 KOG2423 Nucleolar GTPase [Gene 94.9 0.12 2.6E-06 42.9 6.8 88 48-137 211-299 (572)
360 KOG1486 GTP-binding protein DR 94.8 0.52 1.1E-05 36.9 9.7 49 84-137 240-288 (364)
361 KOG0410 Predicted GTP binding 94.8 0.084 1.8E-06 42.6 5.6 84 48-139 255-343 (410)
362 PF00735 Septin: Septin; Inte 94.7 0.34 7.4E-06 38.5 9.1 108 9-120 45-184 (281)
363 KOG0469 Elongation factor 2 [T 94.6 0.058 1.3E-06 45.9 4.5 70 23-95 94-163 (842)
364 PF11111 CENP-M: Centromere pr 94.3 0.48 1E-05 34.8 8.2 90 50-139 64-155 (176)
365 cd02036 MinD Bacterial cell di 94.1 0.53 1.2E-05 34.0 8.5 84 28-115 64-147 (179)
366 PRK09601 GTP-binding protein Y 94.1 0.28 6E-06 40.4 7.5 38 83-120 200-240 (364)
367 COG1149 MinD superfamily P-loo 94.0 0.56 1.2E-05 36.9 8.6 80 27-115 164-243 (284)
368 PRK14974 cell division protein 93.2 0.42 9E-06 39.0 7.1 95 27-130 223-323 (336)
369 KOG2655 Septin family protein 93.2 1.8 3.9E-05 35.6 10.6 125 8-138 60-215 (366)
370 PF05049 IIGP: Interferon-indu 93.1 0.22 4.8E-06 41.1 5.4 108 28-141 87-222 (376)
371 PF14331 ImcF-related_N: ImcF- 93.1 0.24 5.1E-06 39.0 5.3 88 50-139 25-133 (266)
372 PRK13505 formate--tetrahydrofo 93.0 1.2 2.5E-05 38.6 9.6 71 66-138 358-430 (557)
373 COG5019 CDC3 Septin family pro 92.6 2.4 5.3E-05 34.8 10.5 107 7-116 62-200 (373)
374 cd03111 CpaE_like This protein 92.2 0.57 1.2E-05 31.3 5.6 61 28-91 44-106 (106)
375 KOG2485 Conserved ATP/GTP bind 92.1 0.43 9.3E-06 38.3 5.5 90 45-139 41-133 (335)
376 PF09419 PGP_phosphatase: Mito 91.4 2.8 6.1E-05 30.7 8.8 86 48-133 36-128 (168)
377 KOG2486 Predicted GTPase [Gene 90.8 0.13 2.8E-06 40.6 1.5 103 27-134 183-313 (320)
378 KOG0448 Mitofusin 1 GTPase, in 90.8 0.93 2E-05 40.1 6.7 91 28-121 207-310 (749)
379 PRK00771 signal recognition pa 90.7 1.1 2.3E-05 38.0 6.9 84 28-119 177-267 (437)
380 TIGR03371 cellulose_yhjQ cellu 90.3 1.3 2.7E-05 33.9 6.6 65 28-95 116-181 (246)
381 COG4963 CpaE Flp pilus assembl 89.8 1.7 3.8E-05 35.7 7.2 69 25-96 216-285 (366)
382 cd02117 NifH_like This family 89.7 2.9 6.4E-05 31.4 8.1 89 25-116 115-207 (212)
383 TIGR03348 VI_IcmF type VI secr 89.6 0.5 1.1E-05 44.9 4.4 46 50-95 201-256 (1169)
384 TIGR00993 3a0901s04IAP86 chlor 88.7 3.8 8.2E-05 36.7 8.8 70 27-96 166-250 (763)
385 PRK13185 chlL protochlorophyll 88.2 7.3 0.00016 30.3 9.6 84 26-116 117-203 (270)
386 TIGR00959 ffh signal recogniti 87.8 2.2 4.8E-05 36.0 6.8 87 26-119 182-274 (428)
387 cd03114 ArgK-like The function 86.6 1.6 3.5E-05 31.0 4.6 58 26-93 91-148 (148)
388 cd03115 SRP The signal recogni 86.1 3.8 8.3E-05 29.5 6.6 84 26-116 82-171 (173)
389 TIGR01007 eps_fam capsular exo 85.8 3 6.4E-05 31.1 6.0 66 26-95 127-193 (204)
390 KOG1547 Septin CDC10 and relat 84.8 14 0.00031 28.9 9.1 111 8-121 85-227 (336)
391 PF01656 CbiA: CobQ/CobB/MinD/ 84.5 2.1 4.5E-05 31.3 4.6 68 27-97 95-163 (195)
392 PRK13849 putative crown gall t 84.1 4 8.6E-05 31.4 6.1 66 25-93 82-151 (231)
393 COG0523 Putative GTPases (G3E 82.7 6.8 0.00015 31.8 7.1 66 50-119 116-184 (323)
394 cd02032 Bchl_like This family 81.3 6.5 0.00014 30.6 6.4 83 26-115 115-200 (267)
395 TIGR01425 SRP54_euk signal rec 81.2 4.8 0.0001 34.0 5.9 86 26-118 182-273 (429)
396 cd03112 CobW_like The function 81.2 2.3 4.9E-05 30.6 3.5 64 26-94 86-158 (158)
397 cd02037 MRP-like MRP (Multiple 81.0 4.4 9.6E-05 29.2 5.1 65 25-94 66-133 (169)
398 PRK10867 signal recognition pa 81.0 7.6 0.00017 32.9 7.0 87 26-119 183-275 (433)
399 PF07015 VirC1: VirC1 protein; 80.9 7.6 0.00017 29.9 6.4 101 26-130 83-187 (231)
400 TIGR01968 minD_bact septum sit 80.7 4.4 9.5E-05 31.1 5.3 65 26-94 111-175 (261)
401 cd02033 BchX Chlorophyllide re 80.6 23 0.0005 28.9 9.5 107 27-139 148-275 (329)
402 CHL00175 minD septum-site dete 80.1 4.5 9.8E-05 31.7 5.2 65 26-94 126-190 (281)
403 PRK12727 flagellar biosynthesi 79.6 7.4 0.00016 33.9 6.6 87 26-119 428-519 (559)
404 TIGR02016 BchX chlorophyllide 79.2 23 0.0005 28.3 9.0 108 26-139 122-251 (296)
405 TIGR01281 DPOR_bchL light-inde 78.7 23 0.0005 27.5 8.8 84 26-116 115-201 (268)
406 PF09547 Spore_IV_A: Stage IV 78.5 41 0.0009 28.7 10.7 84 51-136 146-236 (492)
407 cd02042 ParA ParA and ParB of 78.4 5.1 0.00011 26.1 4.4 45 27-74 40-84 (104)
408 CHL00072 chlL photochlorophyll 78.2 25 0.00054 27.9 8.9 66 26-94 115-184 (290)
409 cd02040 NifH NifH gene encodes 77.2 30 0.00065 26.7 9.1 65 26-91 116-184 (270)
410 KOG0052 Translation elongation 76.7 7.6 0.00016 32.2 5.6 87 10-97 65-157 (391)
411 cd00477 FTHFS Formyltetrahydro 76.6 24 0.00052 30.5 8.6 66 72-139 348-415 (524)
412 COG0012 Predicted GTPase, prob 76.4 6.5 0.00014 32.5 5.1 39 82-120 206-247 (372)
413 KOG1487 GTP-binding protein DR 75.9 7.8 0.00017 30.7 5.2 48 83-136 232-280 (358)
414 PRK13507 formate--tetrahydrofo 75.9 27 0.00059 30.6 8.8 58 81-138 400-459 (587)
415 KOG0447 Dynamin-like GTP bindi 75.7 5.9 0.00013 34.6 4.8 68 27-97 412-494 (980)
416 TIGR03029 EpsG chain length de 75.7 7.8 0.00017 30.3 5.4 62 26-91 212-274 (274)
417 TIGR01969 minD_arch cell divis 75.3 7.2 0.00016 29.7 5.0 65 26-95 108-173 (251)
418 PRK10818 cell division inhibit 74.5 15 0.00033 28.5 6.7 66 26-94 113-185 (270)
419 PF03193 DUF258: Protein of un 73.5 6.9 0.00015 28.4 4.2 32 104-135 5-36 (161)
420 COG2759 MIS1 Formyltetrahydrof 73.1 26 0.00057 30.0 7.8 58 82-139 369-428 (554)
421 PF00448 SRP54: SRP54-type pro 72.9 23 0.00049 26.5 7.0 86 27-119 84-175 (196)
422 PF03709 OKR_DC_1_N: Orn/Lys/A 72.2 14 0.0003 25.0 5.3 42 50-92 36-77 (115)
423 cd01900 YchF YchF subfamily. 72.0 5.2 0.00011 31.7 3.5 35 27-61 62-103 (274)
424 KOG3929 Uncharacterized conser 70.8 2.4 5.1E-05 33.5 1.3 60 7-66 71-135 (363)
425 PRK06731 flhF flagellar biosyn 69.3 38 0.00083 26.8 7.8 86 26-118 154-245 (270)
426 PF02492 cobW: CobW/HypB/UreG, 68.7 8.8 0.00019 28.0 3.9 57 50-110 113-170 (178)
427 PRK12726 flagellar biosynthesi 68.6 34 0.00074 28.7 7.6 87 26-119 285-377 (407)
428 PRK13506 formate--tetrahydrofo 68.6 51 0.0011 29.0 8.8 59 81-139 392-453 (578)
429 PF01268 FTHFS: Formate--tetra 66.5 9.5 0.00021 33.2 4.1 64 81-144 370-437 (557)
430 PTZ00222 60S ribosomal protein 65.5 39 0.00084 26.5 6.9 112 50-176 148-259 (263)
431 TIGR03018 pepcterm_TyrKin exop 65.0 20 0.00043 26.7 5.3 48 28-77 150-197 (207)
432 COG1419 FlhF Flagellar GTP-bin 64.9 33 0.00072 28.8 6.9 85 26-118 281-372 (407)
433 KOG1249 Predicted GTPases [Gen 64.4 10 0.00022 32.9 3.8 83 50-137 110-211 (572)
434 TIGR01287 nifH nitrogenase iro 63.4 69 0.0015 24.9 8.5 65 26-91 115-183 (275)
435 PF10087 DUF2325: Uncharacteri 62.3 24 0.00052 22.9 4.7 19 45-63 43-61 (97)
436 PRK11670 antiporter inner memb 62.3 70 0.0015 26.5 8.4 67 26-95 215-282 (369)
437 KOG1534 Putative transcription 61.8 32 0.00068 26.6 5.7 69 29-97 100-179 (273)
438 PRK11889 flhF flagellar biosyn 60.8 68 0.0015 27.2 8.0 85 27-118 321-411 (436)
439 PRK14722 flhF flagellar biosyn 60.8 68 0.0015 26.7 8.0 89 26-119 215-316 (374)
440 PRK13231 nitrogenase reductase 60.7 76 0.0016 24.5 9.2 66 26-93 113-179 (264)
441 PLN02759 Formate--tetrahydrofo 60.3 79 0.0017 28.1 8.5 58 81-138 449-509 (637)
442 PRK05703 flhF flagellar biosyn 59.8 71 0.0015 27.0 8.2 90 26-125 299-396 (424)
443 PRK14723 flhF flagellar biosyn 59.7 66 0.0014 29.5 8.3 92 27-125 264-362 (767)
444 COG1908 FrhD Coenzyme F420-red 58.9 22 0.00047 24.6 4.0 57 84-140 56-125 (132)
445 PF08438 MMR_HSR1_C: GTPase of 58.9 9.7 0.00021 25.8 2.3 31 88-120 1-32 (109)
446 PRK10037 cell division protein 58.8 27 0.00058 26.9 5.2 59 25-93 116-174 (250)
447 TIGR03815 CpaE_hom_Actino heli 58.7 14 0.00031 29.6 3.8 82 26-116 204-285 (322)
448 COG3523 IcmF Type VI protein s 57.0 25 0.00053 33.8 5.3 49 48-96 212-270 (1188)
449 cd04170 EF-G_bact Elongation f 54.8 10 0.00022 29.5 2.3 26 112-137 241-266 (268)
450 PRK04452 acetyl-CoA decarbonyl 54.7 48 0.001 27.0 6.1 110 23-137 46-197 (319)
451 TIGR01005 eps_transp_fam exopo 54.5 22 0.00048 32.3 4.6 67 25-95 654-721 (754)
452 cd00959 DeoC 2-deoxyribose-5-p 53.4 63 0.0014 24.1 6.3 68 50-118 82-151 (203)
453 TIGR00381 cdhD CO dehydrogenas 52.9 89 0.0019 26.2 7.3 67 23-90 110-196 (389)
454 PF07905 PucR: Purine cataboli 51.7 74 0.0016 21.6 10.7 95 28-136 27-122 (123)
455 TIGR00126 deoC deoxyribose-pho 51.7 74 0.0016 24.2 6.4 71 49-120 82-154 (211)
456 PTZ00386 formyl tetrahydrofola 51.6 1.6E+02 0.0034 26.3 8.9 58 81-138 436-497 (625)
457 PRK13235 nifH nitrogenase redu 50.6 93 0.002 24.2 7.1 67 25-92 116-186 (274)
458 PRK13232 nifH nitrogenase redu 49.9 76 0.0016 24.7 6.5 67 26-93 116-185 (273)
459 COG0541 Ffh Signal recognition 49.6 34 0.00073 29.1 4.5 42 27-68 183-230 (451)
460 PF12327 FtsZ_C: FtsZ family, 49.4 72 0.0015 20.8 5.8 52 42-93 27-78 (95)
461 PF14784 ECIST_Cterm: C-termin 49.1 34 0.00073 23.8 3.8 38 50-87 83-123 (126)
462 PF12098 DUF3574: Protein of u 49.0 79 0.0017 21.2 6.2 34 29-62 38-71 (104)
463 COG1010 CobJ Precorrin-3B meth 48.5 53 0.0011 25.5 5.1 46 47-92 151-197 (249)
464 cd03362 TOPRIM_TopoIA_TopoIII 48.4 23 0.00049 25.2 3.1 59 73-131 89-150 (151)
465 cd01851 GBP Guanylate-binding 48.3 60 0.0013 24.7 5.6 58 7-65 41-106 (224)
466 PRK13230 nitrogenase reductase 47.8 1.3E+02 0.0029 23.4 8.5 63 26-89 116-181 (279)
467 KOG2961 Predicted hydrolase (H 47.6 1.1E+02 0.0023 22.3 7.0 60 75-134 72-132 (190)
468 PRK13705 plasmid-partitioning 47.0 58 0.0013 27.1 5.7 67 26-95 234-307 (388)
469 PF00072 Response_reg: Respons 45.8 54 0.0012 20.9 4.5 23 71-93 60-82 (112)
470 KOG2052 Activin A type IB rece 45.0 42 0.00092 28.7 4.4 49 28-76 212-260 (513)
471 PRK11537 putative GTP-binding 44.9 84 0.0018 25.4 6.1 85 27-118 91-186 (318)
472 cd04168 TetM_like Tet(M)-like 44.5 19 0.00042 27.7 2.3 26 112-137 210-235 (237)
473 cd04169 RF3 RF3 subfamily. Pe 44.5 17 0.00037 28.5 2.1 26 112-137 240-265 (267)
474 PRK12723 flagellar biosynthesi 44.3 1.4E+02 0.003 25.0 7.4 91 26-125 254-351 (388)
475 PRK12724 flagellar biosynthesi 44.2 1.6E+02 0.0036 25.0 7.8 87 26-119 299-394 (432)
476 cd02067 B12-binding B12 bindin 44.2 47 0.001 22.2 4.0 40 50-91 50-90 (119)
477 cd02035 ArsA ArsA ATPase funct 42.8 43 0.00094 25.2 4.0 67 27-95 114-183 (217)
478 KOG0780 Signal recognition par 42.1 49 0.0011 27.9 4.3 64 25-93 182-251 (483)
479 PRK13233 nifH nitrogenase redu 41.9 1.1E+02 0.0023 23.9 6.2 66 26-92 118-187 (275)
480 cd01886 EF-G Elongation factor 41.6 21 0.00045 28.1 2.1 26 112-137 243-268 (270)
481 PRK13869 plasmid-partitioning 41.5 68 0.0015 26.9 5.3 67 26-95 251-327 (405)
482 cd01028 TOPRIM_TopoIA TOPRIM_T 41.5 28 0.0006 24.4 2.6 59 73-131 81-141 (142)
483 PHA02519 plasmid partition pro 41.2 92 0.002 26.0 6.0 67 26-95 234-307 (387)
484 KOG3022 Predicted ATPase, nucl 41.2 76 0.0017 25.4 5.1 89 25-116 155-253 (300)
485 cd07379 MPP_239FB Homo sapiens 41.1 79 0.0017 21.5 4.9 57 31-94 5-62 (135)
486 PRK13556 azoreductase; Provisi 40.0 48 0.001 24.8 3.8 33 47-79 86-118 (208)
487 TIGR03453 partition_RepA plasm 39.9 46 0.001 27.6 4.0 68 26-95 234-310 (387)
488 PRK00090 bioD dithiobiotin syn 39.8 1.6E+02 0.0034 22.0 8.0 88 26-118 103-199 (222)
489 PRK06995 flhF flagellar biosyn 39.8 1.4E+02 0.0031 25.8 7.0 90 27-125 335-430 (484)
490 PF05014 Nuc_deoxyrib_tr: Nucl 39.4 69 0.0015 21.2 4.2 43 46-94 57-101 (113)
491 PF14606 Lipase_GDSL_3: GDSL-l 39.3 59 0.0013 24.0 4.1 57 33-89 40-100 (178)
492 COG0012 Predicted GTPase, prob 38.6 38 0.00082 28.1 3.2 38 25-62 65-109 (372)
493 cd01844 SGNH_hydrolase_like_6 38.0 1.2E+02 0.0026 21.6 5.7 43 50-92 57-103 (177)
494 COG0552 FtsY Signal recognitio 37.4 68 0.0015 26.3 4.4 93 25-128 220-326 (340)
495 cd01840 SGNH_hydrolase_yrhL_li 37.3 1.2E+02 0.0026 21.1 5.4 65 49-116 49-115 (150)
496 PRK06242 flavodoxin; Provision 37.2 1.4E+02 0.003 20.6 5.9 68 47-116 40-107 (150)
497 PRK13234 nifH nitrogenase redu 37.0 2.1E+02 0.0046 22.7 9.2 67 25-92 118-188 (295)
498 COG1512 Beta-propeller domains 36.7 2.2E+02 0.0047 22.7 8.2 94 49-143 62-168 (271)
499 cd01983 Fer4_NifH The Fer4_Nif 36.6 1E+02 0.0022 18.8 5.7 36 28-63 35-71 (99)
500 TIGR02475 CobW cobalamin biosy 35.2 2.3E+02 0.0049 23.2 7.3 37 27-63 93-136 (341)
No 1
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.2e-35 Score=214.17 Aligned_cols=145 Identities=32% Similarity=0.521 Sum_probs=132.1
Q ss_pred CCCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc-
Q 029875 2 NVSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC- 80 (186)
Q Consensus 2 ~~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~- 80 (186)
.+...|..|||+||..+++.++|+.+++++|||+||++|+.+..+||++|+|+|+|||+++..||..+..|+.++.++.
T Consensus 33 ~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~ 112 (205)
T KOG0084|consen 33 TFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIFVYDITKQESFNNVKRWIQEIDRYAS 112 (205)
T ss_pred CcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCeEEEEEEcccHHHhhhHHHHHHHhhhhcc
Confidence 4678899999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCCCEEEEEeCCCCCC-cccChH-HHHHHHHcCCc-EEEeccCCCCCchHHHHHHHHHHhCCCCccccc
Q 029875 81 ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQ-YYEISAKSNYNFEKPFLYLARKLAGDPNLHFVE 146 (186)
Q Consensus 81 ~~~p~ilv~nK~Dl~~-~~~~~~-~~~~~~~~~~~-~~~~Sa~~~~gi~~l~~~l~~~i~~~~~~~~~~ 146 (186)
.+.|.++||||||+.+ +.+..+ ...++.+++++ ++++|||++.||++.|..|+..+.+........
T Consensus 113 ~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~~f~ETSAK~~~NVe~~F~~la~~lk~~~~~~~~~ 181 (205)
T KOG0084|consen 113 ENVPKLLVGNKCDLTEKRVVSTEEAQEFADELGIPIFLETSAKDSTNVEDAFLTLAKELKQRKGLHVKW 181 (205)
T ss_pred CCCCeEEEeeccccHhheecCHHHHHHHHHhcCCcceeecccCCccCHHHHHHHHHHHHHHhcccCCCC
Confidence 5789999999999986 555544 56899999999 999999999999999999999998775544333
No 2
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.3e-34 Score=206.58 Aligned_cols=140 Identities=31% Similarity=0.485 Sum_probs=127.7
Q ss_pred CCCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcC
Q 029875 2 NVSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE 81 (186)
Q Consensus 2 ~~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~ 81 (186)
.+|..|.+|||+||.++++.+.+..++|+||||+||++|+.+..+|+++|.++|+|||+++..||++..+|++.+++...
T Consensus 46 ~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~g 125 (221)
T KOG0094|consen 46 KFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERG 125 (221)
T ss_pred hhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEEEEEEeccccchHHHHHHHHHHHHhccC
Confidence 37899999999999999999999999999999999999999999999999999999999999999999999999999863
Q ss_pred --CCCEEEEEeCCCCCC-cccChH-HHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCCCC
Q 029875 82 --NIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPN 141 (186)
Q Consensus 82 --~~p~ilv~nK~Dl~~-~~~~~~-~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~ 141 (186)
+.-++|||||.||.+ +++..+ ....+++++..|+++||+.|.||+++|..++..+.+...
T Consensus 126 s~~viI~LVGnKtDL~dkrqvs~eEg~~kAkel~a~f~etsak~g~NVk~lFrrIaa~l~~~~~ 189 (221)
T KOG0094|consen 126 SDDVIIFLVGNKTDLSDKRQVSIEEGERKAKELNAEFIETSAKAGENVKQLFRRIAAALPGMEV 189 (221)
T ss_pred CCceEEEEEcccccccchhhhhHHHHHHHHHHhCcEEEEecccCCCCHHHHHHHHHHhccCccc
Confidence 477889999999985 555544 457889999999999999999999999999988876643
No 3
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=100.00 E-value=6.3e-33 Score=208.73 Aligned_cols=180 Identities=77% Similarity=1.224 Sum_probs=159.6
Q ss_pred CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCC
Q 029875 3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCEN 82 (186)
Q Consensus 3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~ 82 (186)
+...|.||+|.++..+.+.+++..+.+.||||+|+++|..++..++++++++|+|||++++.||+.+..|+..+.+.+.+
T Consensus 20 f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~~~ 99 (200)
T smart00176 20 FEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLVRVCEN 99 (200)
T ss_pred CCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCC
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999988788
Q ss_pred CCEEEEEeCCCCCCcccChHHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCCCCcccccCCCCCCCccccCHHHH
Q 029875 83 IPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQ 162 (186)
Q Consensus 83 ~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (186)
.|++|||||+|+..+.+..+...++...++.|++|||++|.||.++|.+|++.+.+.....+...+...+++...+....
T Consensus 100 ~piilvgNK~Dl~~~~v~~~~~~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (200)
T smart00176 100 IPIVLCGNKVDVKDRKVKAKSITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVMDPALA 179 (200)
T ss_pred CCEEEEEECcccccccCCHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhcccceeccCcccCCcccccChhhh
Confidence 99999999999977666666667888889999999999999999999999999988777777777888888878888888
Q ss_pred HHHHHHHHHHhCCCCCCCcc
Q 029875 163 QQHEAELAAAASQPLPDDDD 182 (186)
Q Consensus 163 ~~~~~~~~~~~~~~~p~~~~ 182 (186)
...++.++.+..-..|..+|
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~ 199 (200)
T smart00176 180 AQYEHDLEVAATTALPDEDD 199 (200)
T ss_pred hhhhHHHHHHHHhcCCCCCC
Confidence 88888777776555666554
No 4
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.6e-33 Score=205.90 Aligned_cols=141 Identities=28% Similarity=0.539 Sum_probs=130.6
Q ss_pred CCCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc-
Q 029875 2 NVSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC- 80 (186)
Q Consensus 2 ~~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~- 80 (186)
.+...|..|||+||..+++..++..+.+++|||+||++|+.+.+.||++|.++++|||+++..||+++..|++.+.+..
T Consensus 36 ~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~ 115 (207)
T KOG0078|consen 36 SFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDITNEKSFENIRNWIKNIDEHAS 115 (207)
T ss_pred cCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCeeEEEEEccchHHHHHHHHHHHHHHhhCC
Confidence 3567899999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred CCCCEEEEEeCCCCCC-cccChH-HHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCCCCc
Q 029875 81 ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNL 142 (186)
Q Consensus 81 ~~~p~ilv~nK~Dl~~-~~~~~~-~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~~ 142 (186)
+++|++|||||+|+.. +++..+ ..++|.++|+.++|+||++|.||+++|..|++.+......
T Consensus 116 ~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G~~F~EtSAk~~~NI~eaF~~La~~i~~k~~~ 179 (207)
T KOG0078|consen 116 DDVVKILVGNKCDLEEKRQVSKERGEALAREYGIKFFETSAKTNFNIEEAFLSLARDILQKLED 179 (207)
T ss_pred CCCcEEEeeccccccccccccHHHHHHHHHHhCCeEEEccccCCCCHHHHHHHHHHHHHhhcch
Confidence 4899999999999986 666655 5689999999999999999999999999999999875443
No 5
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=100.00 E-value=6.2e-32 Score=206.23 Aligned_cols=181 Identities=96% Similarity=1.504 Sum_probs=164.6
Q ss_pred CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCC
Q 029875 3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCEN 82 (186)
Q Consensus 3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~ 82 (186)
+...|.||+|.++....+..++..+.+.||||+|+++|..++..++++++++|+|||++++.||+.+..|+..+.+.+.+
T Consensus 38 f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~~~ 117 (219)
T PLN03071 38 FEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCEN 117 (219)
T ss_pred CCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhCCC
Confidence 45679999999999988888888999999999999999999999999999999999999999999999999999988888
Q ss_pred CCEEEEEeCCCCCCcccChHHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCCCCcccccCCCCCCCccccCHHHH
Q 029875 83 IPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQ 162 (186)
Q Consensus 83 ~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (186)
.|++|||||+|+.++.+..+...+++..+++|++|||++|.||+++|.+|++.+.+.....+...+...++++..+....
T Consensus 118 ~piilvgNK~Dl~~~~v~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (219)
T PLN03071 118 IPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQ 197 (219)
T ss_pred CcEEEEEEchhhhhccCCHHHHHHHHhcCCEEEEcCCCCCCCHHHHHHHHHHHHHcCcchhcccccccCCcccCCCHHHH
Confidence 99999999999986665555557778888999999999999999999999999988877777888888899999999999
Q ss_pred HHHHHHHHHHhCCCCCCCccc
Q 029875 163 QQHEAELAAAASQPLPDDDDD 183 (186)
Q Consensus 163 ~~~~~~~~~~~~~~~p~~~~~ 183 (186)
+..++.++.++..+.+++++.
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~ 218 (219)
T PLN03071 198 QQHEAELAAAAAQPLPDDDDD 218 (219)
T ss_pred HHHHHHHHHHHhcCCCCCCCC
Confidence 999999999998888877653
No 6
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.7e-32 Score=196.18 Aligned_cols=140 Identities=30% Similarity=0.495 Sum_probs=127.3
Q ss_pred CCCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc-
Q 029875 2 NVSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC- 80 (186)
Q Consensus 2 ~~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~- 80 (186)
.|+....||||.-|..+++.++...+.|.||||+||++|..+.++||++|+++|+|||+++.+||..++.|++++++..
T Consensus 29 ~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAivvYDit~~~SF~~aK~WvkeL~~~~~ 108 (200)
T KOG0092|consen 29 QFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAIVVYDITDEESFEKAKNWVKELQRQAS 108 (200)
T ss_pred ccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEEEEEecccHHHHHHHHHHHHHHHhhCC
Confidence 4566679999999999999999999999999999999999999999999999999999999999999999999998875
Q ss_pred CCCCEEEEEeCCCCCC-cccCh-HHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCCCC
Q 029875 81 ENIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPN 141 (186)
Q Consensus 81 ~~~p~ilv~nK~Dl~~-~~~~~-~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~ 141 (186)
++.-+.|||||+||.+ +.+.. +...++...+..|+++|||+|.||+++|..|.+.+.....
T Consensus 109 ~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~gll~~ETSAKTg~Nv~~if~~Ia~~lp~~~~ 171 (200)
T KOG0092|consen 109 PNIVIALVGNKADLLERREVEFEEAQAYAESQGLLFFETSAKTGENVNEIFQAIAEKLPCSDP 171 (200)
T ss_pred CCeEEEEecchhhhhhcccccHHHHHHHHHhcCCEEEEEecccccCHHHHHHHHHHhccCccc
Confidence 4566778999999987 55554 4668999999999999999999999999999999987643
No 7
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=99.98 E-value=7e-32 Score=193.79 Aligned_cols=140 Identities=31% Similarity=0.588 Sum_probs=128.0
Q ss_pred CCCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc-
Q 029875 2 NVSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC- 80 (186)
Q Consensus 2 ~~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~- 80 (186)
+++.+|..|||.+|..+.+.++++.+.++||||+||++|.++.-.+|++||+|++|||++++.||+.+..|.+++....
T Consensus 33 kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~ 112 (210)
T KOG0394|consen 33 KFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNNPKSFENLENWRKEFLIQAS 112 (210)
T ss_pred HHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceEEEEeecCChhhhccHHHHHHHHHHhcC
Confidence 3677899999999999999999999999999999999999999999999999999999999999999999999988764
Q ss_pred ----CCCCEEEEEeCCCCCC---cccChH-HHHHHHHcC-CcEEEeccCCCCCchHHHHHHHHHHhCCCC
Q 029875 81 ----ENIPIVLCGNKVDVKN---RQVKAK-QVTFHRKKN-LQYYEISAKSNYNFEKPFLYLARKLAGDPN 141 (186)
Q Consensus 81 ----~~~p~ilv~nK~Dl~~---~~~~~~-~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~ 141 (186)
..-|+||+|||+|+.+ ++++.+ ++.||..++ ++|+|+|||.+.||.++|..+++..+....
T Consensus 113 ~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEtSAK~~~NV~~AFe~ia~~aL~~E~ 182 (210)
T KOG0394|consen 113 PQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFETSAKEATNVDEAFEEIARRALANED 182 (210)
T ss_pred CCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCceeEEecccccccHHHHHHHHHHHHHhccc
Confidence 3589999999999975 667665 679998774 899999999999999999999999987653
No 8
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=99.98 E-value=1e-31 Score=189.04 Aligned_cols=145 Identities=31% Similarity=0.462 Sum_probs=131.9
Q ss_pred CCCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc-
Q 029875 2 NVSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC- 80 (186)
Q Consensus 2 ~~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~- 80 (186)
.+|-.+..|||+||..+.+.++|.++++.||||+||++|+.+..+||++|.|+|+|||++.+++|..+..|++++.-++
T Consensus 35 ~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~Yst 114 (209)
T KOG0080|consen 35 TFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGIILVYDVTSRDTFVKLDIWLKELDLYST 114 (209)
T ss_pred ccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCceeEEEEEccchhhHHhHHHHHHHHHhhcC
Confidence 3566777889999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred -CCCCEEEEEeCCCCC-CcccChH-HHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCCCCccccc
Q 029875 81 -ENIPIVLCGNKVDVK-NRQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVE 146 (186)
Q Consensus 81 -~~~p~ilv~nK~Dl~-~~~~~~~-~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~~~~~~ 146 (186)
++...++||||+|.. ++.+..+ ..+|++++++-++++||++..||+.+|++++.+|.+.+.+-..+
T Consensus 115 n~diikmlVgNKiDkes~R~V~reEG~kfAr~h~~LFiE~SAkt~~~V~~~FeelveKIi~tp~l~~~~ 183 (209)
T KOG0080|consen 115 NPDIIKMLVGNKIDKESERVVDREEGLKFARKHRCLFIECSAKTRENVQCCFEELVEKIIETPSLWEEG 183 (209)
T ss_pred CccHhHhhhcccccchhcccccHHHHHHHHHhhCcEEEEcchhhhccHHHHHHHHHHHHhcCcchhhcc
Confidence 467778999999987 5666654 67999999999999999999999999999999999988765443
No 9
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=3.3e-32 Score=195.85 Aligned_cols=139 Identities=31% Similarity=0.513 Sum_probs=128.1
Q ss_pred CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc-C
Q 029875 3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-E 81 (186)
Q Consensus 3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-~ 81 (186)
|...|..|||++|..+.+++++++++|++|||+||+.|++.+++||++|.|+|||||+++++||..+..|+..+++.. +
T Consensus 31 F~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~GalLVydit~r~sF~hL~~wL~D~rq~~~~ 110 (216)
T KOG0098|consen 31 FQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGALLVYDITRRESFNHLTSWLEDARQHSNE 110 (216)
T ss_pred ccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcceEEEEEccchhhHHHHHHHHHHHHHhcCC
Confidence 556788999999999999999999999999999999999999999999999999999999999999999999999984 8
Q ss_pred CCCEEEEEeCCCCCC-cccChH-HHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCCCC
Q 029875 82 NIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPN 141 (186)
Q Consensus 82 ~~p~ilv~nK~Dl~~-~~~~~~-~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~ 141 (186)
|.-++|+|||+||.. +.+..+ ...||+++++.++++||+++.||+++|......|....+
T Consensus 111 NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgLifmETSakt~~~VEEaF~nta~~Iy~~~q 172 (216)
T KOG0098|consen 111 NMVIMLIGNKSDLEARREVSKEEGEAFAREHGLIFMETSAKTAENVEEAFINTAKEIYRKIQ 172 (216)
T ss_pred CcEEEEEcchhhhhccccccHHHHHHHHHHcCceeehhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 999999999999984 455544 669999999999999999999999999999999876543
No 10
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=99.97 E-value=5.9e-32 Score=187.90 Aligned_cols=139 Identities=30% Similarity=0.504 Sum_probs=130.1
Q ss_pred CCCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcC
Q 029875 2 NVSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE 81 (186)
Q Consensus 2 ~~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~ 81 (186)
.++.-|+.|||+||..+++.++|..+.|+||||+|+++|+.+...|+++.+++|+|||+++.+||.++++|+++++..++
T Consensus 32 tFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~vVYDVTn~ESF~Nv~rWLeei~~ncd 111 (198)
T KOG0079|consen 32 TFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTNGESFNNVKRWLEEIRNNCD 111 (198)
T ss_pred ccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEEEEEECcchhhhHhHHHHHHHHHhcCc
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEEeCCCCCCccc--ChHHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCCC
Q 029875 82 NIPIVLCGNKVDVKNRQV--KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDP 140 (186)
Q Consensus 82 ~~p~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~ 140 (186)
..|-++||||+|++++.+ ..+++.|+...++.+|++||+.+.|++..|.-|.+++++..
T Consensus 112 sv~~vLVGNK~d~~~RrvV~t~dAr~~A~~mgie~FETSaKe~~NvE~mF~cit~qvl~~k 172 (198)
T KOG0079|consen 112 SVPKVLVGNKNDDPERRVVDTEDARAFALQMGIELFETSAKENENVEAMFHCITKQVLQAK 172 (198)
T ss_pred cccceecccCCCCccceeeehHHHHHHHHhcCchheehhhhhcccchHHHHHHHHHHHHHH
Confidence 999999999999997553 34477999999999999999999999999999999887643
No 11
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=2.2e-31 Score=184.87 Aligned_cols=139 Identities=24% Similarity=0.472 Sum_probs=128.2
Q ss_pred CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc-C
Q 029875 3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-E 81 (186)
Q Consensus 3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-~ 81 (186)
+...|.+|+|++|..+++--+.+++.+++|||+|+++|+.+...++++|+++|+|||++|.+||..+..|+..+..++ .
T Consensus 46 Ft~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgfiLmyDitNeeSf~svqdw~tqIktysw~ 125 (193)
T KOG0093|consen 46 FTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNSVQDWITQIKTYSWD 125 (193)
T ss_pred cccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceEEEEEecCCHHHHHHHHHHHHHheeeecc
Confidence 456789999999999998888899999999999999999999999999999999999999999999999999999997 7
Q ss_pred CCCEEEEEeCCCCCC-cccChH-HHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCCCC
Q 029875 82 NIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPN 141 (186)
Q Consensus 82 ~~p~ilv~nK~Dl~~-~~~~~~-~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~ 141 (186)
+.|+|+||||||+.+ +.+..+ .+.++..+|+.||++|||.+.|++++|..++..|..+.+
T Consensus 126 naqvilvgnKCDmd~eRvis~e~g~~l~~~LGfefFEtSaK~NinVk~~Fe~lv~~Ic~kms 187 (193)
T KOG0093|consen 126 NAQVILVGNKCDMDSERVISHERGRQLADQLGFEFFETSAKENINVKQVFERLVDIICDKMS 187 (193)
T ss_pred CceEEEEecccCCccceeeeHHHHHHHHHHhChHHhhhcccccccHHHHHHHHHHHHHHHhh
Confidence 899999999999984 556555 568999999999999999999999999999999977654
No 12
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.4e-30 Score=191.02 Aligned_cols=138 Identities=32% Similarity=0.501 Sum_probs=127.3
Q ss_pred CCCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc-
Q 029875 2 NVSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC- 80 (186)
Q Consensus 2 ~~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~- 80 (186)
.+..+..+|||++|...++.++++.++.+||||+||++|+.+...||++|.|+++|||++++.+|+.+.+|+.+++...
T Consensus 38 EF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvGAllVYDITr~~Tfenv~rWL~ELRdhad 117 (222)
T KOG0087|consen 38 EFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITRRQTFENVERWLKELRDHAD 117 (222)
T ss_pred ccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccceeEEEEechhHHHHHHHHHHHHHHHhcCC
Confidence 3567889999999999999999999999999999999999999999999999999999999999999999999999886
Q ss_pred CCCCEEEEEeCCCCCC-cc-cChHHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCC
Q 029875 81 ENIPIVLCGNKVDVKN-RQ-VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD 139 (186)
Q Consensus 81 ~~~p~ilv~nK~Dl~~-~~-~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 139 (186)
+++++++||||+||.+ +. ..++...++.+.+..++++||..+.|++.+|..++..|...
T Consensus 118 ~nivimLvGNK~DL~~lraV~te~~k~~Ae~~~l~f~EtSAl~~tNVe~aF~~~l~~I~~~ 178 (222)
T KOG0087|consen 118 SNIVIMLVGNKSDLNHLRAVPTEDGKAFAEKEGLFFLETSALDATNVEKAFERVLTEIYKI 178 (222)
T ss_pred CCeEEEEeecchhhhhccccchhhhHhHHHhcCceEEEecccccccHHHHHHHHHHHHHHH
Confidence 7899999999999986 33 34457789999999999999999999999999999888754
No 13
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.97 E-value=5.8e-30 Score=192.91 Aligned_cols=139 Identities=28% Similarity=0.547 Sum_probs=123.3
Q ss_pred CCCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc-
Q 029875 2 NVSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC- 80 (186)
Q Consensus 2 ~~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~- 80 (186)
.+...|.||+|.+|..+.+.+++..+.++||||+|+++|..++..++++|+++|+|||++++.||+.+..|+..+.+..
T Consensus 24 ~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~ 103 (202)
T cd04120 24 TFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYAS 103 (202)
T ss_pred CCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC
Confidence 3567789999999999999999999999999999999999999999999999999999999999999999999887765
Q ss_pred CCCCEEEEEeCCCCCC-cccChH-HHHHHHHc-CCcEEEeccCCCCCchHHHHHHHHHHhCCC
Q 029875 81 ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKK-NLQYYEISAKSNYNFEKPFLYLARKLAGDP 140 (186)
Q Consensus 81 ~~~p~ilv~nK~Dl~~-~~~~~~-~~~~~~~~-~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~ 140 (186)
.+.|+++||||+|+.+ +.+... ..+++++. ++.|+++||++|.||+++|.++++.+....
T Consensus 104 ~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~~~~etSAktg~gV~e~F~~l~~~~~~~~ 166 (202)
T cd04120 104 EDAELLLVGNKLDCETDREISRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKKM 166 (202)
T ss_pred CCCcEEEEEECcccccccccCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHHHhC
Confidence 5799999999999964 545444 45677775 789999999999999999999999886543
No 14
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.97 E-value=5.5e-30 Score=191.23 Aligned_cols=138 Identities=21% Similarity=0.469 Sum_probs=125.4
Q ss_pred CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCC
Q 029875 3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCEN 82 (186)
Q Consensus 3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~ 82 (186)
++..|.||+|.++....+.+++..+.++||||+|+++|..++..++++||++|||||++++.||+++..|++.+.+..++
T Consensus 31 ~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~~~ 110 (189)
T cd04121 31 TESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHAPG 110 (189)
T ss_pred CCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCC
Confidence 56778899999999888999999999999999999999999999999999999999999999999999999999887789
Q ss_pred CCEEEEEeCCCCCC-cccChH-HHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCCC
Q 029875 83 IPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDP 140 (186)
Q Consensus 83 ~p~ilv~nK~Dl~~-~~~~~~-~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~ 140 (186)
.|++|||||+|+.+ +.+..+ ...+++.++++|++|||++|.||+++|.++++.+....
T Consensus 111 ~piilVGNK~DL~~~~~v~~~~~~~~a~~~~~~~~e~SAk~g~~V~~~F~~l~~~i~~~~ 170 (189)
T cd04121 111 VPKILVGNRLHLAFKRQVATEQAQAYAERNGMTFFEVSPLCNFNITESFTELARIVLMRH 170 (189)
T ss_pred CCEEEEEECccchhccCCCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHHHhc
Confidence 99999999999974 444444 56888889999999999999999999999999887543
No 15
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.97 E-value=7.5e-30 Score=188.54 Aligned_cols=136 Identities=24% Similarity=0.392 Sum_probs=119.5
Q ss_pred CCCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhH-HHHHHHHHhhc
Q 029875 2 NVSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVC 80 (186)
Q Consensus 2 ~~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i-~~~~~~~~~~~ 80 (186)
.+..+|.||+|..+ .+.+.+++..+.++||||+|+++|..++..++++|+++|+|||++++.||+.+ ..|+..+.+..
T Consensus 25 ~f~~~~~~Ti~~~~-~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~ 103 (176)
T cd04133 25 KFPTDYIPTVFDNF-SANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLISRASYENVLKKWVPELRHYA 103 (176)
T ss_pred CCCCCCCCcceeee-EEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhC
Confidence 35678999999776 45678899999999999999999999999999999999999999999999998 68999998877
Q ss_pred CCCCEEEEEeCCCCCCc-----------ccCh-HHHHHHHHcCC-cEEEeccCCCCCchHHHHHHHHHHhC
Q 029875 81 ENIPIVLCGNKVDVKNR-----------QVKA-KQVTFHRKKNL-QYYEISAKSNYNFEKPFLYLARKLAG 138 (186)
Q Consensus 81 ~~~p~ilv~nK~Dl~~~-----------~~~~-~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~i~~ 138 (186)
++.|++|||||+|+.+. .+.. +..++++.+++ .|++|||++|.||+++|..+++.+.+
T Consensus 104 ~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~nV~~~F~~~~~~~~~ 174 (176)
T cd04133 104 PNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDAAIKVVLQ 174 (176)
T ss_pred CCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCcccCHHHHHHHHHHHHhc
Confidence 78999999999999643 2333 35688888887 59999999999999999999998744
No 16
>PTZ00099 rab6; Provisional
Probab=99.97 E-value=2e-29 Score=186.29 Aligned_cols=141 Identities=30% Similarity=0.484 Sum_probs=125.3
Q ss_pred CCCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc-
Q 029875 2 NVSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC- 80 (186)
Q Consensus 2 ~~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~- 80 (186)
.+...|.||+|.++..+.+.+++..+.+.||||+|+++|..++..++++||++|+|||++++.||+.+..|+..+....
T Consensus 4 ~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~ 83 (176)
T PTZ00099 4 TFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERG 83 (176)
T ss_pred CcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcC
Confidence 4677899999999999999999999999999999999999999999999999999999999999999999999987754
Q ss_pred CCCCEEEEEeCCCCCC-cccCh-HHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCCCCc
Q 029875 81 ENIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNL 142 (186)
Q Consensus 81 ~~~p~ilv~nK~Dl~~-~~~~~-~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~~ 142 (186)
.+.|++||+||+|+.+ +.+.. +...++..++..++++||++|.||+++|.+|++.+.+.+++
T Consensus 84 ~~~piilVgNK~DL~~~~~v~~~e~~~~~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~~~~~ 147 (176)
T PTZ00099 84 KDVIIALVGNKTDLGDLRKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAKLPNLDNS 147 (176)
T ss_pred CCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHhcccc
Confidence 5789999999999974 44444 35577778888999999999999999999999999875543
No 17
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=99.97 E-value=7.3e-31 Score=179.73 Aligned_cols=138 Identities=25% Similarity=0.490 Sum_probs=126.0
Q ss_pred CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc-C
Q 029875 3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-E 81 (186)
Q Consensus 3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-~ 81 (186)
+...+++|+|+||..+.+.+++.++++++|||+||++|++....||++||+.+++||+.++.||++++.|+.++.++. .
T Consensus 23 l~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydiankasfdn~~~wlsei~ey~k~ 102 (192)
T KOG0083|consen 23 LAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDIANKASFDNCQAWLSEIHEYAKE 102 (192)
T ss_pred ecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeecccchhHHHHHHHHHHHHHHHHh
Confidence 345678999999999999999999999999999999999999999999999999999999999999999999999986 5
Q ss_pred CCCEEEEEeCCCCCC-cccChH-HHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCCC
Q 029875 82 NIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDP 140 (186)
Q Consensus 82 ~~p~ilv~nK~Dl~~-~~~~~~-~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~ 140 (186)
.+.+.++|||||+.. +.+..+ ..++++.+++|++++||++|.|++-.|-.+++.+.+..
T Consensus 103 ~v~l~llgnk~d~a~er~v~~ddg~kla~~y~ipfmetsaktg~nvd~af~~ia~~l~k~~ 163 (192)
T KOG0083|consen 103 AVALMLLGNKCDLAHERAVKRDDGEKLAEAYGIPFMETSAKTGFNVDLAFLAIAEELKKLK 163 (192)
T ss_pred hHhHhhhccccccchhhccccchHHHHHHHHCCCceeccccccccHhHHHHHHHHHHHHhc
Confidence 678899999999964 555544 67899999999999999999999999999999987653
No 18
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.97 E-value=2.8e-29 Score=186.48 Aligned_cols=134 Identities=21% Similarity=0.330 Sum_probs=119.4
Q ss_pred CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhH-HHHHHHHHhhcC
Q 029875 3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCE 81 (186)
Q Consensus 3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i-~~~~~~~~~~~~ 81 (186)
+...|.||+|.++. +.+.+++..+.++||||+|+++|..++..++++|+++|+|||++++.||+.+ ..|++.+.+..+
T Consensus 30 f~~~~~pT~~~~~~-~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~ 108 (182)
T cd04172 30 FPENYVPTVFENYT-ASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP 108 (182)
T ss_pred CCCccCCceeeeeE-EEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCC
Confidence 56789999997775 6788899999999999999999999999999999999999999999999997 799999998888
Q ss_pred CCCEEEEEeCCCCCC-------------cccCh-HHHHHHHHcCC-cEEEeccCCCCC-chHHHHHHHHHHh
Q 029875 82 NIPIVLCGNKVDVKN-------------RQVKA-KQVTFHRKKNL-QYYEISAKSNYN-FEKPFLYLARKLA 137 (186)
Q Consensus 82 ~~p~ilv~nK~Dl~~-------------~~~~~-~~~~~~~~~~~-~~~~~Sa~~~~g-i~~l~~~l~~~i~ 137 (186)
+.|++|||||+||.+ +.+.. +..++++++++ +|++|||++|.| |+++|..+++.++
T Consensus 109 ~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~n~v~~~F~~~~~~~~ 180 (182)
T cd04172 109 NTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACV 180 (182)
T ss_pred CCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEECCcCCCCCCHHHHHHHHHHHHh
Confidence 899999999999964 22443 46689999995 899999999998 9999999998654
No 19
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1.6e-29 Score=182.41 Aligned_cols=183 Identities=73% Similarity=1.164 Sum_probs=173.6
Q ss_pred CCCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcC
Q 029875 2 NVSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE 81 (186)
Q Consensus 2 ~~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~ 81 (186)
.|...|.||+|++.....+..+.+.+++..|||+|++.+..+...|+-.+.+.|++||++.+-++.++.+|.+.+.+.+.
T Consensus 34 eFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAiimFdVtsr~t~~n~~rwhrd~~rv~~ 113 (216)
T KOG0096|consen 34 EFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAIIMFDVTSRFTYKNVPRWHRDLVRVRE 113 (216)
T ss_pred cceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeEEEeeeeehhhhhcchHHHHHHHHHhc
Confidence 36678999999999999888888899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEEeCCCCCCcccChHHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCCCCcccccCCCCCCCccccCHHH
Q 029875 82 NIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAA 161 (186)
Q Consensus 82 ~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (186)
++|++++|||.|...+++..+...+.+..++.|+++||+++.|.+.-|.++++.+...+.+.+..++.+.|++.+.+...
T Consensus 114 NiPiv~cGNKvDi~~r~~k~k~v~~~rkknl~y~~iSaksn~NfekPFl~LarKl~G~p~Lefva~paLaPpev~~d~~~ 193 (216)
T KOG0096|consen 114 NIPIVLCGNKVDIKARKVKAKPVSFHRKKNLQYYEISAKSNYNFERPFLWLARKLTGDPSLEFVAMPALAPPEVIMDYWL 193 (216)
T ss_pred CCCeeeeccceeccccccccccceeeecccceeEEeecccccccccchHHHhhhhcCCCCeEEEeccccCCCeeeccchh
Confidence 99999999999999888777777778888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCCccccc
Q 029875 162 QQQHEAELAAAASQPLPDDDDDAF 185 (186)
Q Consensus 162 ~~~~~~~~~~~~~~~~p~~~~~~~ 185 (186)
.++++..+..+++.|+|+||+ +|
T Consensus 194 ~~q~e~dl~~a~t~~lp~ed~-~~ 216 (216)
T KOG0096|consen 194 QRQHEHDLAEAQTTALPDEDD-KL 216 (216)
T ss_pred hHHHHHHHHHHhccCCCcccc-cC
Confidence 999999999999999999998 43
No 20
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.96 E-value=1.6e-28 Score=188.25 Aligned_cols=137 Identities=17% Similarity=0.271 Sum_probs=121.4
Q ss_pred CCCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhH-HHHHHHHHhhc
Q 029875 2 NVSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVC 80 (186)
Q Consensus 2 ~~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i-~~~~~~~~~~~ 80 (186)
.++..|.||+|.++. +.+.+++..+.++||||+|+++|..++..++++|+++|+|||++++.||+.+ ..|+..+.+..
T Consensus 37 ~F~~~y~pTi~~~~~-~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~ 115 (232)
T cd04174 37 CYPETYVPTVFENYT-AGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYC 115 (232)
T ss_pred CCCCCcCCceeeeeE-EEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhC
Confidence 356789999998875 4678899999999999999999999999999999999999999999999985 79999999887
Q ss_pred CCCCEEEEEeCCCCCC-------------cccCh-HHHHHHHHcCC-cEEEeccCCCC-CchHHHHHHHHHHhCC
Q 029875 81 ENIPIVLCGNKVDVKN-------------RQVKA-KQVTFHRKKNL-QYYEISAKSNY-NFEKPFLYLARKLAGD 139 (186)
Q Consensus 81 ~~~p~ilv~nK~Dl~~-------------~~~~~-~~~~~~~~~~~-~~~~~Sa~~~~-gi~~l~~~l~~~i~~~ 139 (186)
++.|++|||||+|+.+ +.+.. +..++++.+++ .|++|||++|. ||+++|..++..+.+.
T Consensus 116 ~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~EtSAktg~~~V~e~F~~~~~~~~~~ 190 (232)
T cd04174 116 PSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYLECSAFTSEKSIHSIFRSASLLCLNK 190 (232)
T ss_pred CCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEEEEccCCcCCcCHHHHHHHHHHHHHHh
Confidence 8899999999999963 33444 46789999998 69999999998 8999999999988764
No 21
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.96 E-value=1.8e-28 Score=183.45 Aligned_cols=137 Identities=26% Similarity=0.443 Sum_probs=118.5
Q ss_pred CCCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHH-HHHHHHHhhc
Q 029875 2 NVSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVC 80 (186)
Q Consensus 2 ~~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~-~~~~~~~~~~ 80 (186)
.+...|.||+|.++. +.+.+++..+.++||||+|+++|..++..++++||++|+|||++++.||+.+. .|+..+.+..
T Consensus 27 ~f~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~ 105 (191)
T cd01875 27 AFPKEYIPTVFDNYS-AQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHC 105 (191)
T ss_pred CCCcCCCCceEeeeE-EEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC
Confidence 356789999997664 45678999999999999999999999999999999999999999999999996 6998887776
Q ss_pred CCCCEEEEEeCCCCCCcc-------------cC-hHHHHHHHHcC-CcEEEeccCCCCCchHHHHHHHHHHhCC
Q 029875 81 ENIPIVLCGNKVDVKNRQ-------------VK-AKQVTFHRKKN-LQYYEISAKSNYNFEKPFLYLARKLAGD 139 (186)
Q Consensus 81 ~~~p~ilv~nK~Dl~~~~-------------~~-~~~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 139 (186)
++.|++|||||+||.+.. +. .+...++++++ ++|+++||++|.||+++|.++++.+...
T Consensus 106 ~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SAk~g~~v~e~f~~l~~~~~~~ 179 (191)
T cd01875 106 PNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSALNQDGVKEVFAEAVRAVLNP 179 (191)
T ss_pred CCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCCHHHHHHHHHHHHhcc
Confidence 789999999999996421 22 23557888888 5899999999999999999999988653
No 22
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.96 E-value=1.9e-28 Score=181.46 Aligned_cols=134 Identities=20% Similarity=0.314 Sum_probs=118.7
Q ss_pred CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhH-HHHHHHHHhhcC
Q 029875 3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCE 81 (186)
Q Consensus 3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i-~~~~~~~~~~~~ 81 (186)
++..|.||+|.++. +.+.+++..+.++||||+|+++|..++..++++|+++|+|||++++.||+.+ ..|+..+.+.++
T Consensus 26 f~~~~~~t~~~~~~-~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~~ 104 (178)
T cd04131 26 YPETYVPTVFENYT-ASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLICFDISRPETLDSVLKKWRGEIQEFCP 104 (178)
T ss_pred CCCCcCCceEEEEE-EEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHCC
Confidence 56789999998775 6788899999999999999999999999999999999999999999999996 799999998888
Q ss_pred CCCEEEEEeCCCCCC-------------cccCh-HHHHHHHHcCC-cEEEeccCCCCC-chHHHHHHHHHHh
Q 029875 82 NIPIVLCGNKVDVKN-------------RQVKA-KQVTFHRKKNL-QYYEISAKSNYN-FEKPFLYLARKLA 137 (186)
Q Consensus 82 ~~p~ilv~nK~Dl~~-------------~~~~~-~~~~~~~~~~~-~~~~~Sa~~~~g-i~~l~~~l~~~i~ 137 (186)
+.|++|||||+||.+ +.+.. +..++++++++ +|++|||++|.| |+++|..+++..+
T Consensus 105 ~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~~~~~~v~~~F~~~~~~~~ 176 (178)
T cd04131 105 NTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAFTSEKSVRDIFHVATMACL 176 (178)
T ss_pred CCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccCcCCcCHHHHHHHHHHHHh
Confidence 999999999999963 12443 46689999996 799999999995 9999999998654
No 23
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.96 E-value=8e-28 Score=176.05 Aligned_cols=140 Identities=83% Similarity=1.350 Sum_probs=126.6
Q ss_pred CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCC
Q 029875 3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCEN 82 (186)
Q Consensus 3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~ 82 (186)
+...|.||+|.++....+..++..+.+.+|||+|++.+..++..+++++|++|+|||++++.||+.+..|+..+.+.+.+
T Consensus 25 ~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~ 104 (166)
T cd00877 25 FEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCGN 104 (166)
T ss_pred CCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCC
Confidence 45678999999999988888999999999999999999999999999999999999999999999999999999988778
Q ss_pred CCEEEEEeCCCCCCcccChHHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCCCCc
Q 029875 83 IPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNL 142 (186)
Q Consensus 83 ~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~~ 142 (186)
.|+++|+||+|+.++.+..+..++++..+++++++||++|.|++++|.+|++.+.+.+..
T Consensus 105 ~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~~~~~ 164 (166)
T cd00877 105 IPIVLCGNKVDIKDRKVKAKQITFHRKKNLQYYEISAKSNYNFEKPFLWLARKLLGNPNL 164 (166)
T ss_pred CcEEEEEEchhcccccCCHHHHHHHHHcCCEEEEEeCCCCCChHHHHHHHHHHHHhcccc
Confidence 999999999999866665566677777788999999999999999999999999876543
No 24
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.96 E-value=5.7e-28 Score=179.45 Aligned_cols=138 Identities=21% Similarity=0.281 Sum_probs=119.8
Q ss_pred CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcC-
Q 029875 3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE- 81 (186)
Q Consensus 3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~- 81 (186)
+...|.||+|.++..+.+.+++..+.+++|||+|+++|..++..++++|+++++|||++++.||+++..|+..+.+..+
T Consensus 25 f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~ 104 (182)
T cd04128 25 FDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKT 104 (182)
T ss_pred CCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCC
Confidence 4567999999999988999999999999999999999999999999999999999999999999999999999987654
Q ss_pred CCCEEEEEeCCCCCCc-------ccChHHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCCCC
Q 029875 82 NIPIVLCGNKVDVKNR-------QVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPN 141 (186)
Q Consensus 82 ~~p~ilv~nK~Dl~~~-------~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~ 141 (186)
..| ++||||+|+... ....+..++++..+++++++||++|.|++++|.++++.+.+.+.
T Consensus 105 ~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~e~SAk~g~~v~~lf~~l~~~l~~~~~ 170 (182)
T cd04128 105 AIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMKAPLIFCSTSHSINVQKIFKIVLAKAFDLPL 170 (182)
T ss_pred CCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhcCC
Confidence 455 688999999521 12233456788888999999999999999999999999987554
No 25
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.96 E-value=5.2e-27 Score=178.47 Aligned_cols=181 Identities=76% Similarity=1.230 Sum_probs=164.5
Q ss_pred CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCC
Q 029875 3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCEN 82 (186)
Q Consensus 3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~ 82 (186)
+...|.||+|.++....+..+++.+.+++|||+|+++|..++..+++.++++|+|||+++..+|..+..|+..+.+...+
T Consensus 34 ~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~ 113 (215)
T PTZ00132 34 FEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVCEN 113 (215)
T ss_pred CCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCC
Confidence 45679999999999999988999999999999999999999999999999999999999999999999999999887788
Q ss_pred CCEEEEEeCCCCCCcccChHHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCCCCcccccCCCCCCCccccCHHHH
Q 029875 83 IPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQ 162 (186)
Q Consensus 83 ~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (186)
.|+++++||+|+.++.+..+...++...++.++++||++|.|++++|.++++.+...+..-....+...+.+..++....
T Consensus 114 ~~i~lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~ 193 (215)
T PTZ00132 114 IPIVLVGNKVDVKDRQVKARQITFHRKKNLQYYDISAKSNYNFEKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELV 193 (215)
T ss_pred CCEEEEEECccCccccCCHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHhhcccceecCCcccCCCccccCHHHH
Confidence 99999999999976655555567777788999999999999999999999999999988888888887788889999999
Q ss_pred HHHHHHHHHHhCCCCCCCccc
Q 029875 163 QQHEAELAAAASQPLPDDDDD 183 (186)
Q Consensus 163 ~~~~~~~~~~~~~~~p~~~~~ 183 (186)
+.+...+++.+..|.|+++|+
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~ 214 (215)
T PTZ00132 194 AQAEKELQAAANVPLPDDDDD 214 (215)
T ss_pred HHHHHHHHHHhhCCCCCCcCC
Confidence 999999999999999988764
No 26
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=99.96 E-value=3.7e-29 Score=176.60 Aligned_cols=137 Identities=26% Similarity=0.481 Sum_probs=121.5
Q ss_pred CCccccccceEEEEEEEEEE-CCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc-
Q 029875 3 VSVWGKATIGVEVHPLDFFT-NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC- 80 (186)
Q Consensus 3 ~~~~~~~Tig~~~~~~~~~~-~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~- 80 (186)
+..-..||+|+||+.+-+.+ .|..++|+||||+||++|+++.++||+++-|+++|||++|+.||+.+..|..+...+.
T Consensus 33 faelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgvllvyditnr~sfehv~~w~~ea~m~~q 112 (213)
T KOG0091|consen 33 FAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGVLLVYDITNRESFEHVENWVKEAAMATQ 112 (213)
T ss_pred ccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccceEEEEeccchhhHHHHHHHHHHHHHhcC
Confidence 34456899999999988877 6888999999999999999999999999999999999999999999999999987765
Q ss_pred -CCCC-EEEEEeCCCCCC-cccChH-HHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCC
Q 029875 81 -ENIP-IVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD 139 (186)
Q Consensus 81 -~~~p-~ilv~nK~Dl~~-~~~~~~-~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 139 (186)
+..+ +.+||.|+||.. +++..+ +.++++.+++.++++||++|.||++.|..+.+.+...
T Consensus 113 ~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hgM~FVETSak~g~NVeEAF~mlaqeIf~~ 175 (213)
T KOG0091|consen 113 GPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHGMAFVETSAKNGCNVEEAFDMLAQEIFQA 175 (213)
T ss_pred CCCeeEEEEeccccchhhhccccHHHHHHHHHhcCceEEEecccCCCcHHHHHHHHHHHHHHH
Confidence 4444 569999999984 666655 6689999999999999999999999999999888653
No 27
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=8.5e-29 Score=173.13 Aligned_cols=139 Identities=30% Similarity=0.507 Sum_probs=125.6
Q ss_pred CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc-C
Q 029875 3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-E 81 (186)
Q Consensus 3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-~ 81 (186)
++-+..-|||++|.++.+++.++.++++||||+||++|++..+.||++|-+.++|||+++++||..+..|+..++... +
T Consensus 34 fkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~ 113 (214)
T KOG0086|consen 34 FKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRDSFNALTNWLTDARTLASP 113 (214)
T ss_pred hcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccceEEEEeccchhhHHHHHHHHHHHHhhCCC
Confidence 344566799999999999999999999999999999999999999999999999999999999999999999999876 6
Q ss_pred CCCEEEEEeCCCCCC-cccChH-HHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCCCC
Q 029875 82 NIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPN 141 (186)
Q Consensus 82 ~~p~ilv~nK~Dl~~-~~~~~~-~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~ 141 (186)
++-++++|||.||.+ +++... ..+|+.++.+.++++||++|+|++++|-..++.|+.+-+
T Consensus 114 nIvviL~GnKkDL~~~R~VtflEAs~FaqEnel~flETSa~TGeNVEEaFl~c~~tIl~kIE 175 (214)
T KOG0086|consen 114 NIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTILNKIE 175 (214)
T ss_pred cEEEEEeCChhhcChhhhhhHHHHHhhhcccceeeeeecccccccHHHHHHHHHHHHHHHHh
Confidence 788899999999985 555544 568999999999999999999999999999999876643
No 28
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.95 E-value=3.1e-27 Score=174.44 Aligned_cols=133 Identities=20% Similarity=0.325 Sum_probs=114.5
Q ss_pred CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHH-HHHHHHHhhcC
Q 029875 3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCE 81 (186)
Q Consensus 3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~-~~~~~~~~~~~ 81 (186)
+...|.||+|.++. +.+.+++..+.++||||+|+++|..++..++++|+++|+|||++++.||+.+. .|+..+....+
T Consensus 26 f~~~~~pt~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~~ 104 (175)
T cd01874 26 FPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP 104 (175)
T ss_pred CCCCCCCceeeeeE-EEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC
Confidence 55789999998775 46778899999999999999999999999999999999999999999999996 59998887767
Q ss_pred CCCEEEEEeCCCCCCc-------------ccChH-HHHHHHHcC-CcEEEeccCCCCCchHHHHHHHHHH
Q 029875 82 NIPIVLCGNKVDVKNR-------------QVKAK-QVTFHRKKN-LQYYEISAKSNYNFEKPFLYLARKL 136 (186)
Q Consensus 82 ~~p~ilv~nK~Dl~~~-------------~~~~~-~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~i 136 (186)
+.|++|||||+|+.+. .+..+ ..++++..+ ..|++|||++|.|++++|+.+++..
T Consensus 105 ~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~tg~~v~~~f~~~~~~~ 174 (175)
T cd01874 105 KTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALTQKGLKNVFDEAILAA 174 (175)
T ss_pred CCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCCCCCCHHHHHHHHHHHh
Confidence 8999999999998642 23333 446777776 6899999999999999999998754
No 29
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.95 E-value=2.2e-27 Score=178.11 Aligned_cols=131 Identities=18% Similarity=0.334 Sum_probs=109.7
Q ss_pred CCccccccceE-EEEEEE--------EEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHH-HH
Q 029875 3 VSVWGKATIGV-EVHPLD--------FFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVP-TW 72 (186)
Q Consensus 3 ~~~~~~~Tig~-~~~~~~--------~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~-~~ 72 (186)
+...|.||+|. +.+... ..+++..+.++||||+|++. .++..++++|+++|+|||++++.||+.+. .|
T Consensus 33 f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w 110 (195)
T cd01873 33 LLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--KDRRFAYGRSDVVLLCFSIASPNSLRNVKTMW 110 (195)
T ss_pred CccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--hhhcccCCCCCEEEEEEECCChhHHHHHHHHH
Confidence 35678999984 433322 25689999999999999976 35677899999999999999999999996 69
Q ss_pred HHHHHhhcCCCCEEEEEeCCCCCC--------------------cccCh-HHHHHHHHcCCcEEEeccCCCCCchHHHHH
Q 029875 73 HRDLCRVCENIPIVLCGNKVDVKN--------------------RQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLY 131 (186)
Q Consensus 73 ~~~~~~~~~~~p~ilv~nK~Dl~~--------------------~~~~~-~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 131 (186)
++.+....++.|+++||||+||.+ +.+.. +..+++++++++|++|||++|.||+++|..
T Consensus 111 ~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~ 190 (195)
T cd01873 111 YPEIRHFCPRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILPPETGRAVAKELGIPYYETSVVTQFGVKDVFDN 190 (195)
T ss_pred HHHHHHhCCCCCEEEEEEchhccccccchhhhcccccccccccCCccCHHHHHHHHHHhCCEEEEcCCCCCCCHHHHHHH
Confidence 999988777899999999999863 33443 366899999999999999999999999999
Q ss_pred HHHH
Q 029875 132 LARK 135 (186)
Q Consensus 132 l~~~ 135 (186)
+++.
T Consensus 191 ~~~~ 194 (195)
T cd01873 191 AIRA 194 (195)
T ss_pred HHHh
Confidence 9864
No 30
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=2.9e-28 Score=171.46 Aligned_cols=137 Identities=31% Similarity=0.532 Sum_probs=121.1
Q ss_pred CCCccccccceEEEEEEEEEEC---------CeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHH
Q 029875 2 NVSVWGKATIGVEVHPLDFFTN---------CGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTW 72 (186)
Q Consensus 2 ~~~~~~~~Tig~~~~~~~~~~~---------~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~ 72 (186)
.+..+.++|+|+||..+.+..+ +.++.++||||+||++|+++...++++|-+++++||+++..||.+++.|
T Consensus 33 ~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTAFfRDAMGFlLiFDlT~eqSFLnvrnW 112 (219)
T KOG0081|consen 33 KFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLIFDLTSEQSFLNVRNW 112 (219)
T ss_pred cccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHHHHHHhhccceEEEeccchHHHHHHHHH
Confidence 4677899999999999988773 3469999999999999999999999999999999999999999999999
Q ss_pred HHHHHh--hcCCCCEEEEEeCCCCCC-cccChH-HHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhC
Q 029875 73 HRDLCR--VCENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG 138 (186)
Q Consensus 73 ~~~~~~--~~~~~p~ilv~nK~Dl~~-~~~~~~-~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 138 (186)
+.+++. ++.+..++++|||+||.+ ++++.. ...++.++++||+++||-+|.||++..+.|+..+.+
T Consensus 113 lSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfETSA~tg~Nv~kave~LldlvM~ 182 (219)
T KOG0081|consen 113 LSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFETSACTGTNVEKAVELLLDLVMK 182 (219)
T ss_pred HHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeeeeccccCcCHHHHHHHHHHHHHH
Confidence 999865 457888999999999997 445444 458999999999999999999999988888776654
No 31
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=99.95 E-value=8.8e-29 Score=173.96 Aligned_cols=141 Identities=26% Similarity=0.423 Sum_probs=126.2
Q ss_pred CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcC-
Q 029875 3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE- 81 (186)
Q Consensus 3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~- 81 (186)
|.-.|.+|+...|..+.+++.+....+.||||+||++|..+...||++++++++|||+++++||+.++.|..+++....
T Consensus 38 Fn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGalLVyDITDrdSFqKVKnWV~Elr~mlGn 117 (218)
T KOG0088|consen 38 FNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNGALLVYDITDRDSFQKVKNWVLELRTMLGN 117 (218)
T ss_pred cchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCceEEEEeccchHHHHHHHHHHHHHHHHhCC
Confidence 4557889999999999999999999999999999999999999999999999999999999999999999999998864
Q ss_pred CCCEEEEEeCCCCCC-cccC-hHHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCCCCcc
Q 029875 82 NIPIVLCGNKVDVKN-RQVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLH 143 (186)
Q Consensus 82 ~~p~ilv~nK~Dl~~-~~~~-~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~~~ 143 (186)
.+-++|||||+||.+ +++. +++...+..-+..|+++||+.+.||.++|..|...+.+..+..
T Consensus 118 ei~l~IVGNKiDLEeeR~Vt~qeAe~YAesvGA~y~eTSAk~N~Gi~elFe~Lt~~MiE~~s~~ 181 (218)
T KOG0088|consen 118 EIELLIVGNKIDLEEERQVTRQEAEAYAESVGALYMETSAKDNVGISELFESLTAKMIEHSSQR 181 (218)
T ss_pred eeEEEEecCcccHHHhhhhhHHHHHHHHHhhchhheecccccccCHHHHHHHHHHHHHHHhhhc
Confidence 567889999999984 5444 3466788888999999999999999999999999998776443
No 32
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.95 E-value=4.7e-27 Score=171.62 Aligned_cols=136 Identities=34% Similarity=0.511 Sum_probs=121.3
Q ss_pred CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc-C
Q 029875 3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-E 81 (186)
Q Consensus 3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-~ 81 (186)
+...|.||+|.++..+.+.+++..+.+++|||+|+++|..++..++++++++|+|||++++.||+.+..|+..+.... +
T Consensus 27 ~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~ 106 (166)
T cd04122 27 FMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNP 106 (166)
T ss_pred CCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCC
Confidence 456788999999998888899999999999999999999999999999999999999999999999999999887764 5
Q ss_pred CCCEEEEEeCCCCCCc-ccC-hHHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhC
Q 029875 82 NIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG 138 (186)
Q Consensus 82 ~~p~ilv~nK~Dl~~~-~~~-~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 138 (186)
+.|+++|+||+|+.+. .+. .+..++++.++++++++||++|.|++++|..+++.+.+
T Consensus 107 ~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~e~f~~l~~~~~~ 165 (166)
T cd04122 107 NTVIFLIGNKADLEAQRDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLETAKKIYQ 165 (166)
T ss_pred CCeEEEEEECcccccccCcCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 7899999999999753 333 34567888889999999999999999999999988754
No 33
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.95 E-value=6.5e-27 Score=176.20 Aligned_cols=138 Identities=34% Similarity=0.524 Sum_probs=121.2
Q ss_pred CCccccccceEEEEEEEEEEC-CeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc-
Q 029875 3 VSVWGKATIGVEVHPLDFFTN-CGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC- 80 (186)
Q Consensus 3 ~~~~~~~Tig~~~~~~~~~~~-~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~- 80 (186)
++..|.||+|.++....+.++ +..+.++||||+|+++|..++..++++|+++|+|||++++.||+.+..|+..+....
T Consensus 25 ~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~ 104 (201)
T cd04107 25 FSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVT 104 (201)
T ss_pred CCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhc
Confidence 456789999999998888887 889999999999999999999999999999999999999999999999998887542
Q ss_pred ----CCCCEEEEEeCCCCCC-cccCh-HHHHHHHHcC-CcEEEeccCCCCCchHHHHHHHHHHhCCC
Q 029875 81 ----ENIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKN-LQYYEISAKSNYNFEKPFLYLARKLAGDP 140 (186)
Q Consensus 81 ----~~~p~ilv~nK~Dl~~-~~~~~-~~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~ 140 (186)
.+.|++||+||+|+.+ +.+.. +..++++.++ ..++++||++|.||+++|.++++.+....
T Consensus 105 ~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~f~~l~~~l~~~~ 171 (201)
T cd04107 105 LPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIGWFETSAKEGINIEEAMRFLVKNILAND 171 (201)
T ss_pred ccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCceEEEEeCCCCCCHHHHHHHHHHHHHHhc
Confidence 4789999999999973 33333 4567888888 68999999999999999999999987653
No 34
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.95 E-value=7.8e-27 Score=171.79 Aligned_cols=137 Identities=29% Similarity=0.428 Sum_probs=119.5
Q ss_pred CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc--
Q 029875 3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-- 80 (186)
Q Consensus 3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-- 80 (186)
+...|.||+|..+. +.+.+++..+.++||||+|+++|..++..++++++++|+|||++++.||+.+..|...+.+..
T Consensus 27 f~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~ 105 (172)
T cd04141 27 FPDYHDPTIEDAYK-QQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRLT 105 (172)
T ss_pred CCCCcCCcccceEE-EEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcCC
Confidence 45678999996664 567889999999999999999999999999999999999999999999999999988887653
Q ss_pred CCCCEEEEEeCCCCCC-cccCh-HHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCCC
Q 029875 81 ENIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDP 140 (186)
Q Consensus 81 ~~~p~ilv~nK~Dl~~-~~~~~-~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~ 140 (186)
.+.|+++|+||+|+.+ +.+.. +...+++.++++|++|||++|.||+++|.++++.+....
T Consensus 106 ~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~~~ 167 (172)
T cd04141 106 EDIPLVLVGNKVDLESQRQVTTEEGRNLAREFNCPFFETSAALRHYIDDAFHGLVREIRRKE 167 (172)
T ss_pred CCCCEEEEEEChhhhhcCccCHHHHHHHHHHhCCEEEEEecCCCCCHHHHHHHHHHHHHHhc
Confidence 5799999999999964 44544 356788888999999999999999999999999887643
No 35
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.95 E-value=8.1e-27 Score=177.96 Aligned_cols=138 Identities=21% Similarity=0.332 Sum_probs=119.4
Q ss_pred CCCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhH-HHHHHHHHhhc
Q 029875 2 NVSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVC 80 (186)
Q Consensus 2 ~~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i-~~~~~~~~~~~ 80 (186)
.++..|.||++.+|. ..+.+++..+.|.||||+|++.|..++..+++++|++|+|||++++.||+.+ ..|...+...+
T Consensus 25 ~f~~~y~pTi~~~~~-~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~ 103 (222)
T cd04173 25 AYPGSYVPTVFENYT-ASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFC 103 (222)
T ss_pred CCCCccCCccccceE-EEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC
Confidence 356789999998775 6788899999999999999999999999999999999999999999999998 57888887777
Q ss_pred CCCCEEEEEeCCCCCCc-------------ccCh-HHHHHHHHcCC-cEEEeccCCCCC-chHHHHHHHHHHhCCC
Q 029875 81 ENIPIVLCGNKVDVKNR-------------QVKA-KQVTFHRKKNL-QYYEISAKSNYN-FEKPFLYLARKLAGDP 140 (186)
Q Consensus 81 ~~~p~ilv~nK~Dl~~~-------------~~~~-~~~~~~~~~~~-~~~~~Sa~~~~g-i~~l~~~l~~~i~~~~ 140 (186)
++.|++|||||+|+.+. .+.. +...++++.+. +|+||||+++.| |+++|..++.......
T Consensus 104 ~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk~~~~~V~~~F~~~~~~~~~~~ 179 (222)
T cd04173 104 PNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSRSSERSVRDVFHVATVASLGRG 179 (222)
T ss_pred CCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCCcCCcCHHHHHHHHHHHHHhcc
Confidence 89999999999999642 1333 35688888885 899999999985 9999999999876543
No 36
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.95 E-value=1e-26 Score=171.46 Aligned_cols=132 Identities=23% Similarity=0.387 Sum_probs=113.8
Q ss_pred CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHH-HHHHHHHhhcC
Q 029875 3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCE 81 (186)
Q Consensus 3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~-~~~~~~~~~~~ 81 (186)
+..+|.||++. .+...+.+++..+.++||||+|++.|..++..+++++|++|+|||++++.||+.+. .|+..+....+
T Consensus 26 f~~~~~~t~~~-~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~ 104 (174)
T cd01871 26 FPGEYIPTVFD-NYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP 104 (174)
T ss_pred CCCcCCCccee-eeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC
Confidence 56789999974 44567778999999999999999999999999999999999999999999999985 69988877777
Q ss_pred CCCEEEEEeCCCCCCc-------------ccCh-HHHHHHHHcC-CcEEEeccCCCCCchHHHHHHHHH
Q 029875 82 NIPIVLCGNKVDVKNR-------------QVKA-KQVTFHRKKN-LQYYEISAKSNYNFEKPFLYLARK 135 (186)
Q Consensus 82 ~~p~ilv~nK~Dl~~~-------------~~~~-~~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~ 135 (186)
+.|++|||||+|+.+. .+.. +..+++++++ +++++|||++|.|++++|+.+++.
T Consensus 105 ~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~ 173 (174)
T cd01871 105 NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQKGLKTVFDEAIRA 173 (174)
T ss_pred CCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEecccccCCHHHHHHHHHHh
Confidence 8999999999999642 1222 3457888888 489999999999999999999864
No 37
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.95 E-value=1.2e-26 Score=170.55 Aligned_cols=137 Identities=27% Similarity=0.376 Sum_probs=119.6
Q ss_pred CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc--
Q 029875 3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-- 80 (186)
Q Consensus 3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-- 80 (186)
+...|.||+|.++..+.+.+++..+.++||||+|+++|..++..++++||++++|||++++.+|+.+..|+..+++..
T Consensus 25 f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~ 104 (170)
T cd04108 25 FDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDP 104 (170)
T ss_pred CCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC
Confidence 567899999999998899999999999999999999999999999999999999999999999999999999987653
Q ss_pred CCCCEEEEEeCCCCCCc-cc---ChHHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCC
Q 029875 81 ENIPIVLCGNKVDVKNR-QV---KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD 139 (186)
Q Consensus 81 ~~~p~ilv~nK~Dl~~~-~~---~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 139 (186)
.+.|+++|+||+|+.+. .. ..+...++..++.+++++||++|.|++++|..+++.+.+.
T Consensus 105 ~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~v~~lf~~l~~~~~~~ 167 (170)
T cd04108 105 SSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAEYWSVSALSGENVREFFFRVAALTFEL 167 (170)
T ss_pred CCCeEEEEEEChhcCccccccccHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 35789999999999643 21 2234567777888999999999999999999999888654
No 38
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.95 E-value=1.6e-26 Score=167.80 Aligned_cols=136 Identities=31% Similarity=0.567 Sum_probs=126.0
Q ss_pred CCCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcC
Q 029875 2 NVSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE 81 (186)
Q Consensus 2 ~~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~ 81 (186)
.++..|.||+|.++..+.+.+++..+.++|||++|+++|..++..++++++++|+|||++++.||+.+..|+..+....+
T Consensus 23 ~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~ 102 (162)
T PF00071_consen 23 EFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFDVTDEESFENLKKWLEEIQKYKP 102 (162)
T ss_dssp STTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHST
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 35778999999999999999999999999999999999999999999999999999999999999999999999999886
Q ss_pred -CCCEEEEEeCCCCCC-cccChH-HHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHh
Q 029875 82 -NIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLA 137 (186)
Q Consensus 82 -~~p~ilv~nK~Dl~~-~~~~~~-~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 137 (186)
+.|++|+|||+|+.+ +.+..+ ..++++.++.+|+++||+++.||.++|..+++.+.
T Consensus 103 ~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~~i~~i~ 161 (162)
T PF00071_consen 103 EDIPIIVVGNKSDLSDEREVSVEEAQEFAKELGVPYFEVSAKNGENVKEIFQELIRKIL 161 (162)
T ss_dssp TTSEEEEEEETTTGGGGSSSCHHHHHHHHHHTTSEEEEEBTTTTTTHHHHHHHHHHHHH
T ss_pred ccccceeeeccccccccccchhhHHHHHHHHhCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 699999999999985 555544 56899999999999999999999999999999875
No 39
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.95 E-value=2.3e-26 Score=167.37 Aligned_cols=133 Identities=27% Similarity=0.486 Sum_probs=118.7
Q ss_pred CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc-C
Q 029875 3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-E 81 (186)
Q Consensus 3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-~ 81 (186)
+...|.||+|.++..+.+.+++..+.+++|||+|+++|..++..+++++|++++|||++++.||+.+..|++.+.... .
T Consensus 25 ~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~ 104 (161)
T cd04117 25 FHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPE 104 (161)
T ss_pred CCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCC
Confidence 456789999999998899999999999999999999999999999999999999999999999999999999988765 4
Q ss_pred CCCEEEEEeCCCCCC-cccC-hHHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHH
Q 029875 82 NIPIVLCGNKVDVKN-RQVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK 135 (186)
Q Consensus 82 ~~p~ilv~nK~Dl~~-~~~~-~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 135 (186)
+.|+++|+||+|+.+ +.+. .+...+++.++++|+++||++|.|++++|.+|++.
T Consensus 105 ~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~ 160 (161)
T cd04117 105 GVQKILIGNKADEEQKRQVGDEQGNKLAKEYGMDFFETSACTNSNIKESFTRLTEL 160 (161)
T ss_pred CCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHhh
Confidence 789999999999974 3343 34557788888999999999999999999999864
No 40
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.95 E-value=3.1e-26 Score=167.18 Aligned_cols=136 Identities=25% Similarity=0.496 Sum_probs=120.1
Q ss_pred CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc-C
Q 029875 3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-E 81 (186)
Q Consensus 3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-~ 81 (186)
+...|.||+|.++...++..++..+.+++|||+|+++|..++..++++++++++|||++++.+|+.+..|++.+.... .
T Consensus 26 ~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~ 105 (165)
T cd01865 26 FTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWD 105 (165)
T ss_pred CCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCC
Confidence 456789999999988888888899999999999999999999999999999999999999999999999999998765 4
Q ss_pred CCCEEEEEeCCCCCCc-ccC-hHHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhC
Q 029875 82 NIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG 138 (186)
Q Consensus 82 ~~p~ilv~nK~Dl~~~-~~~-~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 138 (186)
+.|+++|+||+|+.+. ... ....+++..++++++++||++|.|+.++|++++..+..
T Consensus 106 ~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~ 164 (165)
T cd01865 106 NAQVILVGNKCDMEDERVVSSERGRQLADQLGFEFFEASAKENINVKQVFERLVDIICD 164 (165)
T ss_pred CCCEEEEEECcccCcccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 7899999999999753 333 33456777888999999999999999999999987653
No 41
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.94 E-value=8e-26 Score=168.77 Aligned_cols=137 Identities=26% Similarity=0.394 Sum_probs=116.7
Q ss_pred CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHH-HHHHHHHhhcC
Q 029875 3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCE 81 (186)
Q Consensus 3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~-~~~~~~~~~~~ 81 (186)
+...|.||++.++. ..+.+++..+.++||||+|++.|..++..++++++++|+|||++++.||+.+. .|+..+....+
T Consensus 25 ~~~~~~~t~~~~~~-~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~ 103 (189)
T cd04134 25 FPQVYEPTVFENYV-HDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFSVDSPDSLENVESKWLGEIREHCP 103 (189)
T ss_pred CCCccCCcceeeeE-EEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC
Confidence 45678999998875 45667888899999999999999999999999999999999999999999986 69999988777
Q ss_pred CCCEEEEEeCCCCCCcc-------------cCh-HHHHHHHHcC-CcEEEeccCCCCCchHHHHHHHHHHhCCC
Q 029875 82 NIPIVLCGNKVDVKNRQ-------------VKA-KQVTFHRKKN-LQYYEISAKSNYNFEKPFLYLARKLAGDP 140 (186)
Q Consensus 82 ~~p~ilv~nK~Dl~~~~-------------~~~-~~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~ 140 (186)
+.|+++|+||+|+.+.. +.. +...++...+ ++|++|||++|.||+++|.++++.+....
T Consensus 104 ~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~v~e~f~~l~~~~~~~~ 177 (189)
T cd04134 104 GVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKLNRGVNEAFTEAARVALNVR 177 (189)
T ss_pred CCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCcCCCHHHHHHHHHHHHhccc
Confidence 89999999999997532 122 2446676666 68999999999999999999999987543
No 42
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.94 E-value=8e-26 Score=170.09 Aligned_cols=138 Identities=30% Similarity=0.471 Sum_probs=123.5
Q ss_pred CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCC
Q 029875 3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCEN 82 (186)
Q Consensus 3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~ 82 (186)
+...|.||+|.++....+.+++..+.+.||||||++.|..++..++++++++|+|||++++.||+.+..|++.+......
T Consensus 31 ~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~~~ 110 (199)
T cd04110 31 FSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCDD 110 (199)
T ss_pred CCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCC
Confidence 45678999999999889988999999999999999999999999999999999999999999999999999999887788
Q ss_pred CCEEEEEeCCCCCCc-ccChH-HHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCCC
Q 029875 83 IPIVLCGNKVDVKNR-QVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDP 140 (186)
Q Consensus 83 ~p~ilv~nK~Dl~~~-~~~~~-~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~ 140 (186)
.|++||+||+|+.+. .+..+ ...++...+.+++++||++|.||+++|+++.+.+....
T Consensus 111 ~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~lf~~l~~~~~~~~ 170 (199)
T cd04110 111 VCKVLVGNKNDDPERKVVETEDAYKFAGQMGISLFETSAKENINVEEMFNCITELVLRAK 170 (199)
T ss_pred CCEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCcCHHHHHHHHHHHHHHhh
Confidence 999999999999753 33333 45677788899999999999999999999999997654
No 43
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.94 E-value=4.2e-26 Score=168.45 Aligned_cols=136 Identities=31% Similarity=0.502 Sum_probs=119.3
Q ss_pred CCccccccceEEEEEEEEEEC----------CeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHH
Q 029875 3 VSVWGKATIGVEVHPLDFFTN----------CGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTW 72 (186)
Q Consensus 3 ~~~~~~~Tig~~~~~~~~~~~----------~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~ 72 (186)
+...|.||+|.++....+.++ +..+.++||||+|+++|..++..++++++++|+|||++++.||..+..|
T Consensus 29 ~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~ 108 (180)
T cd04127 29 FNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLIFDLTNEQSFLNVRNW 108 (180)
T ss_pred CCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHH
Confidence 466889999999988777664 4679999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhc--CCCCEEEEEeCCCCCC-cccChH-HHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhC
Q 029875 73 HRDLCRVC--ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG 138 (186)
Q Consensus 73 ~~~~~~~~--~~~p~ilv~nK~Dl~~-~~~~~~-~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 138 (186)
+..+.... .+.|+++|+||+|+.+ +.+..+ ..+++..++++++++||++|.|++++|+.+++.+.+
T Consensus 109 ~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~~~v~~l~~~l~~~~~~ 178 (180)
T cd04127 109 MSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALADKYGIPYFETSAATGTNVEKAVERLLDLVMK 178 (180)
T ss_pred HHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 99987753 5789999999999975 344433 557888899999999999999999999999987753
No 44
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.94 E-value=6.2e-26 Score=165.89 Aligned_cols=137 Identities=28% Similarity=0.513 Sum_probs=121.8
Q ss_pred CCCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc-
Q 029875 2 NVSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC- 80 (186)
Q Consensus 2 ~~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~- 80 (186)
.++..|.||+|.++....+.+++..+.+++|||+|++++..++..++++||++|+|||++++.+|..+..|+..+.+..
T Consensus 27 ~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~ 106 (167)
T cd01867 27 SFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDEKSFENIRNWMRNIEEHAS 106 (167)
T ss_pred cCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHhCC
Confidence 3567899999999988888889999999999999999999999999999999999999999999999999999998765
Q ss_pred CCCCEEEEEeCCCCCC-cccCh-HHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhC
Q 029875 81 ENIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG 138 (186)
Q Consensus 81 ~~~p~ilv~nK~Dl~~-~~~~~-~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 138 (186)
.+.|+++|+||+|+.+ +.+.. ....++..++++++++||++|.|++++|.++++.+..
T Consensus 107 ~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 166 (167)
T cd01867 107 EDVERMLVGNKCDMEEKRVVSKEEGEALADEYGIKFLETSAKANINVEEAFFTLAKDIKK 166 (167)
T ss_pred CCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 5789999999999985 33333 3457788888999999999999999999999998864
No 45
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.94 E-value=7.8e-26 Score=164.98 Aligned_cols=135 Identities=32% Similarity=0.542 Sum_probs=121.0
Q ss_pred CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc-C
Q 029875 3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-E 81 (186)
Q Consensus 3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-~ 81 (186)
++..|.||+|.++....+.+++..+.+++|||+|+++|..++..++++++++|+|||++++.||..+..|+..+.+.. .
T Consensus 27 ~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~ 106 (166)
T cd01869 27 YTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASE 106 (166)
T ss_pred CCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCC
Confidence 456789999999999999999999999999999999999999999999999999999999999999999999998876 5
Q ss_pred CCCEEEEEeCCCCCC-cccC-hHHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHh
Q 029875 82 NIPIVLCGNKVDVKN-RQVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLA 137 (186)
Q Consensus 82 ~~p~ilv~nK~Dl~~-~~~~-~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 137 (186)
+.|+++|+||+|+.. +.+. .+...++..++++++++||++|.|++++|..+++.+.
T Consensus 107 ~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 164 (166)
T cd01869 107 NVNKLLVGNKCDLTDKRVVDYSEAQEFADELGIPFLETSAKNATNVEQAFMTMAREIK 164 (166)
T ss_pred CCcEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCcCHHHHHHHHHHHHH
Confidence 789999999999864 3333 3355778888999999999999999999999998875
No 46
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.94 E-value=8.7e-26 Score=171.83 Aligned_cols=138 Identities=25% Similarity=0.387 Sum_probs=121.2
Q ss_pred CCCccccccceEEEEEEEEEECC-eEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc
Q 029875 2 NVSVWGKATIGVEVHPLDFFTNC-GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC 80 (186)
Q Consensus 2 ~~~~~~~~Tig~~~~~~~~~~~~-~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~ 80 (186)
.+...|.||+|.+++.+.+.+++ ..+.++||||+|++.+..++..++++||++|+|||++++.||+.+..|+..+.+..
T Consensus 24 ~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~ 103 (215)
T cd04109 24 GFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVL 103 (215)
T ss_pred CCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence 35678999999999988888865 57999999999999999999999999999999999999999999999999998864
Q ss_pred ----CCCCEEEEEeCCCCCC-cccChH-HHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCC
Q 029875 81 ----ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD 139 (186)
Q Consensus 81 ----~~~p~ilv~nK~Dl~~-~~~~~~-~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 139 (186)
.+.|+++|+||+|+.+ +.+..+ ...+++.++++++++||++|.||+++|+++++.+...
T Consensus 104 ~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~~iSAktg~gv~~lf~~l~~~l~~~ 168 (215)
T cd04109 104 KSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGMESCLVSAKTGDRVNLLFQQLAAELLGV 168 (215)
T ss_pred cccCCCceEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 2468999999999974 444443 4578888889999999999999999999999998764
No 47
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.94 E-value=1.8e-25 Score=162.62 Aligned_cols=135 Identities=30% Similarity=0.463 Sum_probs=119.0
Q ss_pred CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCC
Q 029875 3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCEN 82 (186)
Q Consensus 3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~ 82 (186)
+...+.||++.++......+++..+.+++|||+|+++|..++..+++++|++|+|||++++.+|+.+..|+..+.+..++
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~ 104 (161)
T cd04124 25 YEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVFDVTRKITYKNLSKWYEELREYRPE 104 (161)
T ss_pred CCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCC
Confidence 34567789999998888888999999999999999999999999999999999999999999999999999999887778
Q ss_pred CCEEEEEeCCCCCCcccChHHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhC
Q 029875 83 IPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG 138 (186)
Q Consensus 83 ~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 138 (186)
.|+++|+||+|+... ...+...++..++++++++||++|.|++++|+.+++.+.+
T Consensus 105 ~p~ivv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~ 159 (161)
T cd04124 105 IPCIVVANKIDLDPS-VTQKKFNFAEKHNLPLYYVSAADGTNVVKLFQDAIKLAVS 159 (161)
T ss_pred CcEEEEEECccCchh-HHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 999999999998533 2233446667778899999999999999999999988765
No 48
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.94 E-value=1.1e-25 Score=163.28 Aligned_cols=133 Identities=29% Similarity=0.449 Sum_probs=115.1
Q ss_pred CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc--
Q 029875 3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-- 80 (186)
Q Consensus 3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-- 80 (186)
+...|.||++ +.+.+.+.+++..+.++||||+|+++|..++..++++++++++|||++++.+|+.+..|+..+....
T Consensus 26 ~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~ 104 (163)
T cd04136 26 FVEKYDPTIE-DSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDT 104 (163)
T ss_pred CCcccCCchh-hhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC
Confidence 4567889998 5556778889999999999999999999999999999999999999999999999999999987753
Q ss_pred CCCCEEEEEeCCCCCC-cccChH-HHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHH
Q 029875 81 ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 136 (186)
Q Consensus 81 ~~~p~ilv~nK~Dl~~-~~~~~~-~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 136 (186)
.+.|+++|+||+|+.+ +.+..+ ...+++.++.+++++||++|.|+.++|.++++.+
T Consensus 105 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~ 162 (163)
T cd04136 105 ENVPMVLVGNKCDLEDERVVSREEGQALARQWGCPFYETSAKSKINVDEVFADLVRQI 162 (163)
T ss_pred CCCCEEEEEECccccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHhc
Confidence 5799999999999964 333333 4467777788999999999999999999998765
No 49
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.94 E-value=1.4e-25 Score=163.24 Aligned_cols=135 Identities=23% Similarity=0.438 Sum_probs=119.8
Q ss_pred CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc--
Q 029875 3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-- 80 (186)
Q Consensus 3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-- 80 (186)
+...|.||+|.++..+.+.+++..+.+++|||+|++.|..++..++++++++|+|||++++.+|+.+..|+..+.+..
T Consensus 25 ~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~ 104 (168)
T cd04119 25 FVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGP 104 (168)
T ss_pred CCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccc
Confidence 455799999999999999999999999999999999999999999999999999999999999999999999998765
Q ss_pred ----CCCCEEEEEeCCCCCC-cccChH-HHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHh
Q 029875 81 ----ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLA 137 (186)
Q Consensus 81 ----~~~p~ilv~nK~Dl~~-~~~~~~-~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 137 (186)
.+.|+++|+||+|+.+ +....+ ...++...+++++++||++|.|++++|++|++.+.
T Consensus 105 ~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~l~ 167 (168)
T cd04119 105 HGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMFQTLFSSIV 167 (168)
T ss_pred cccCCCceEEEEEEchhcccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3589999999999973 333333 44677888899999999999999999999998875
No 50
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=99.94 E-value=8.4e-26 Score=166.69 Aligned_cols=139 Identities=23% Similarity=0.392 Sum_probs=122.8
Q ss_pred CCCccccccceEEEEEEEEEEC-CeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHH-HHHHHHHhh
Q 029875 2 NVSVWGKATIGVEVHPLDFFTN-CGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRV 79 (186)
Q Consensus 2 ~~~~~~~~Tig~~~~~~~~~~~-~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~-~~~~~~~~~ 79 (186)
-++..|.||+. |-+...+.++ |+.+.+.||||+||+.|.+++...|.++|++++||++.++.||+++. .|+.++.+.
T Consensus 28 ~fp~~yvPTVF-dnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~ 106 (198)
T KOG0393|consen 28 AFPEEYVPTVF-DNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFLLCFSVVSPESFENVKSKWIPEIKHH 106 (198)
T ss_pred cCcccccCeEE-ccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEEEEEEcCChhhHHHHHhhhhHHHHhh
Confidence 37889999997 6666788895 99999999999999999999999999999999999999999999984 899999999
Q ss_pred cCCCCEEEEEeCCCCCCc-------------ccC-hHHHHHHHHcC-CcEEEeccCCCCCchHHHHHHHHHHhCCCC
Q 029875 80 CENIPIVLCGNKVDVKNR-------------QVK-AKQVTFHRKKN-LQYYEISAKSNYNFEKPFLYLARKLAGDPN 141 (186)
Q Consensus 80 ~~~~p~ilv~nK~Dl~~~-------------~~~-~~~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~ 141 (186)
+++.|+|+||+|.||++. .+. .+...++++.| ..|++|||+++.|++++|+..++..+..+.
T Consensus 107 cp~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~EcSa~tq~~v~~vF~~a~~~~l~~~~ 183 (198)
T KOG0393|consen 107 CPNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLECSALTQKGVKEVFDEAIRAALRPPQ 183 (198)
T ss_pred CCCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeeehhhhhCCcHHHHHHHHHHHhcccc
Confidence 999999999999999842 122 23557888888 579999999999999999999999987654
No 51
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=1.6e-26 Score=159.96 Aligned_cols=132 Identities=35% Similarity=0.563 Sum_probs=121.8
Q ss_pred cccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc-CCCCEE
Q 029875 8 KATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIV 86 (186)
Q Consensus 8 ~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-~~~p~i 86 (186)
.-|||++|..+.+.+.|.+++++||||+||++|+...++|+++|.+.++|||++.+.++..+..|+...+... ++.-++
T Consensus 41 phtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaagalmvyditrrstynhlsswl~dar~ltnpnt~i~ 120 (215)
T KOG0097|consen 41 PHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIF 120 (215)
T ss_pred CcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccceeEEEEehhhhhhhhHHHHHhhhhccCCCceEEE
Confidence 4599999999999999999999999999999999999999999999999999999999999999999998874 788999
Q ss_pred EEEeCCCCCC-cccC-hHHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCC
Q 029875 87 LCGNKVDVKN-RQVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD 139 (186)
Q Consensus 87 lv~nK~Dl~~-~~~~-~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 139 (186)
++|||.||.. +.+. ++..+++.++++.++++||++|.|+++.|-+.++++.+.
T Consensus 121 lignkadle~qrdv~yeeak~faeengl~fle~saktg~nvedafle~akkiyqn 175 (215)
T KOG0097|consen 121 LIGNKADLESQRDVTYEEAKEFAEENGLMFLEASAKTGQNVEDAFLETAKKIYQN 175 (215)
T ss_pred EecchhhhhhcccCcHHHHHHHHhhcCeEEEEecccccCcHHHHHHHHHHHHHHh
Confidence 9999999984 4444 456799999999999999999999999999999999765
No 52
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.94 E-value=2.1e-25 Score=166.65 Aligned_cols=138 Identities=28% Similarity=0.432 Sum_probs=118.5
Q ss_pred CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc--
Q 029875 3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-- 80 (186)
Q Consensus 3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-- 80 (186)
+...|.||+|..+. +.+.+++..+.++||||+|+++|..++..++++||++|+|||+++..||+.+..|+..+....
T Consensus 24 f~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~ 102 (190)
T cd04144 24 FVETYDPTIEDSYR-KQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDE 102 (190)
T ss_pred CCccCCCchHhhEE-EEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcc
Confidence 45678999996664 566788999999999999999999999999999999999999999999999999998887653
Q ss_pred --CCCCEEEEEeCCCCCC-cccChH-HHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCCCC
Q 029875 81 --ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPN 141 (186)
Q Consensus 81 --~~~p~ilv~nK~Dl~~-~~~~~~-~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~ 141 (186)
.+.|+++|+||+|+.+ +.+... ...++..++++++++||++|.|++++|.++++.+.....
T Consensus 103 ~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~~~l~~~~~ 167 (190)
T cd04144 103 SAADVPIMIVGNKCDKVYEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLVRALRQQRQ 167 (190)
T ss_pred cCCCCCEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHHHHHHHhhc
Confidence 4689999999999964 444433 457778888999999999999999999999998876543
No 53
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.94 E-value=3.5e-25 Score=162.58 Aligned_cols=135 Identities=24% Similarity=0.373 Sum_probs=116.4
Q ss_pred CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHH-HHHHHHHhhcC
Q 029875 3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCE 81 (186)
Q Consensus 3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~-~~~~~~~~~~~ 81 (186)
+...|.||++..+. ..+.+++..+.+++|||+|++.|..++..+++++|++|+|||++++.||+.+. .|+..+.+..+
T Consensus 23 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~ 101 (174)
T smart00174 23 FPEDYVPTVFENYS-ADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCP 101 (174)
T ss_pred CCCCCCCcEEeeee-EEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC
Confidence 56778999986665 56778899999999999999999999999999999999999999999999985 69999988778
Q ss_pred CCCEEEEEeCCCCCCcc-------------cCh-HHHHHHHHcCC-cEEEeccCCCCCchHHHHHHHHHHhC
Q 029875 82 NIPIVLCGNKVDVKNRQ-------------VKA-KQVTFHRKKNL-QYYEISAKSNYNFEKPFLYLARKLAG 138 (186)
Q Consensus 82 ~~p~ilv~nK~Dl~~~~-------------~~~-~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~i~~ 138 (186)
+.|+++|+||+|+.... +.. +..++++..+. ++++|||++|.||+++|..+++.+.+
T Consensus 102 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~l~~~~~~ 173 (174)
T smart00174 102 NTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQEGVREVFEEAIRAALN 173 (174)
T ss_pred CCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHHHhcC
Confidence 99999999999996421 222 24568888886 89999999999999999999988754
No 54
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.94 E-value=2.8e-25 Score=162.65 Aligned_cols=134 Identities=31% Similarity=0.548 Sum_probs=118.3
Q ss_pred CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc--
Q 029875 3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-- 80 (186)
Q Consensus 3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-- 80 (186)
++..+.||+|.++..+.+.+++..+.++||||+|+++|..++..+++++|++|+|||++++.||+.+..|...+....
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~ 109 (170)
T cd04116 30 FDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADV 109 (170)
T ss_pred CCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhccc
Confidence 456788999999998899999999999999999999999999999999999999999999999999999999887653
Q ss_pred ---CCCCEEEEEeCCCCCCcccChH-HHHHHHHcC-CcEEEeccCCCCCchHHHHHHHHHH
Q 029875 81 ---ENIPIVLCGNKVDVKNRQVKAK-QVTFHRKKN-LQYYEISAKSNYNFEKPFLYLARKL 136 (186)
Q Consensus 81 ---~~~p~ilv~nK~Dl~~~~~~~~-~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~i 136 (186)
.+.|+++|+||+|+..+.+..+ ..++++.++ .+++++||++|.|+.++|..+++.+
T Consensus 110 ~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~~~~~~ 170 (170)
T cd04116 110 KEPESFPFVVLGNKNDIPERQVSTEEAQAWCRENGDYPYFETSAKDATNVAAAFEEAVRRV 170 (170)
T ss_pred ccCCCCcEEEEEECccccccccCHHHHHHHHHHCCCCeEEEEECCCCCCHHHHHHHHHhhC
Confidence 3689999999999976555444 557888787 4799999999999999999998753
No 55
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.94 E-value=2.1e-25 Score=161.76 Aligned_cols=133 Identities=29% Similarity=0.574 Sum_probs=118.3
Q ss_pred CCccccccceEEEEEEEEEEC--CeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc
Q 029875 3 VSVWGKATIGVEVHPLDFFTN--CGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC 80 (186)
Q Consensus 3 ~~~~~~~Tig~~~~~~~~~~~--~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~ 80 (186)
+...|.||+|.++....+.+. +..+.++||||||+++|..++..++++++++++|||++++.+|+.+..|+..+.+..
T Consensus 25 ~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~ 104 (162)
T cd04106 25 FTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAEC 104 (162)
T ss_pred CCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC
Confidence 456789999999988888877 788999999999999999999999999999999999999999999999999998877
Q ss_pred CCCCEEEEEeCCCCCC-cccCh-HHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHH
Q 029875 81 ENIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK 135 (186)
Q Consensus 81 ~~~p~ilv~nK~Dl~~-~~~~~-~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 135 (186)
.+.|+++|+||+|+.. ..+.. +...+++..+++++++||++|.|++++|.+|...
T Consensus 105 ~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 161 (162)
T cd04106 105 GDIPMVLVQTKIDLLDQAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELFEYLAEK 161 (162)
T ss_pred CCCCEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 8899999999999964 33343 3557888889999999999999999999999754
No 56
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=2.8e-26 Score=159.96 Aligned_cols=134 Identities=32% Similarity=0.565 Sum_probs=118.4
Q ss_pred ccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc-CCC
Q 029875 5 VWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENI 83 (186)
Q Consensus 5 ~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-~~~ 83 (186)
--...|||++|..+++.++|.+++++||||+||++|+++..+||+.|+++|+|||++=.+||+-+..|+.++.++. ..+
T Consensus 34 pgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahalilvydiscqpsfdclpewlreie~yan~kv 113 (213)
T KOG0095|consen 34 PGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISCQPSFDCLPEWLREIEQYANNKV 113 (213)
T ss_pred CCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceEEEEEecccCcchhhhHHHHHHHHHHhhcce
Confidence 3456899999999999999999999999999999999999999999999999999999999999999999999986 456
Q ss_pred CEEEEEeCCCCCCc-ccChH-HHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhC
Q 029875 84 PIVLCGNKVDVKNR-QVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG 138 (186)
Q Consensus 84 p~ilv~nK~Dl~~~-~~~~~-~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 138 (186)
-.|+||||+|+.++ .+++. ..++......-++++||+...|++.+|..++-.+..
T Consensus 114 lkilvgnk~d~~drrevp~qigeefs~~qdmyfletsakea~nve~lf~~~a~rli~ 170 (213)
T KOG0095|consen 114 LKILVGNKIDLADRREVPQQIGEEFSEAQDMYFLETSAKEADNVEKLFLDLACRLIS 170 (213)
T ss_pred EEEeeccccchhhhhhhhHHHHHHHHHhhhhhhhhhcccchhhHHHHHHHHHHHHHH
Confidence 67899999999875 45444 346776666778999999999999999999877754
No 57
>PTZ00369 Ras-like protein; Provisional
Probab=99.93 E-value=2.9e-25 Score=165.67 Aligned_cols=136 Identities=25% Similarity=0.408 Sum_probs=118.5
Q ss_pred CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc--
Q 029875 3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-- 80 (186)
Q Consensus 3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-- 80 (186)
+...|.||+|..+ .+.+.+++..+.++||||+|+++|..++..++++++++|+|||++++.+|+.+..|+..+.+..
T Consensus 30 ~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~ 108 (189)
T PTZ00369 30 FIDEYDPTIEDSY-RKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDK 108 (189)
T ss_pred CCcCcCCchhhEE-EEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC
Confidence 3457889999777 5678889999999999999999999999999999999999999999999999999999987764
Q ss_pred CCCCEEEEEeCCCCCC-cccChH-HHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCC
Q 029875 81 ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD 139 (186)
Q Consensus 81 ~~~p~ilv~nK~Dl~~-~~~~~~-~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 139 (186)
.+.|+++|+||+|+.+ +.+... ...++..++.+++++||++|.||+++|.++++.+...
T Consensus 109 ~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~Sak~~~gi~~~~~~l~~~l~~~ 169 (189)
T PTZ00369 109 DRVPMILVGNKCDLDSERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYELVREIRKY 169 (189)
T ss_pred CCCCEEEEEECcccccccccCHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHHHHHHHHH
Confidence 4789999999999964 334433 4567777788999999999999999999999988654
No 58
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.93 E-value=3.2e-25 Score=165.77 Aligned_cols=137 Identities=27% Similarity=0.493 Sum_probs=121.8
Q ss_pred ccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc-CCC
Q 029875 5 VWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENI 83 (186)
Q Consensus 5 ~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-~~~ 83 (186)
..|.||++.++..+.+.+++..+.++||||||+++|..++..+++++|++|+|||++++.+|+++..|+..+.... .+.
T Consensus 28 ~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~ 107 (191)
T cd04112 28 GNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQEDV 107 (191)
T ss_pred cCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCC
Confidence 3689999999998888899999999999999999999999999999999999999999999999999999998876 478
Q ss_pred CEEEEEeCCCCCC-cccCh-HHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCCCC
Q 029875 84 PIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPN 141 (186)
Q Consensus 84 p~ilv~nK~Dl~~-~~~~~-~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~ 141 (186)
|+++|+||+|+.. +.+.. +...++..++++|+++||++|.|++++|.++++.+.....
T Consensus 108 piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~Sa~~~~~v~~l~~~l~~~~~~~~~ 167 (191)
T cd04112 108 VIMLLGNKADMSGERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVAKELKHRKY 167 (191)
T ss_pred cEEEEEEcccchhccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHhcc
Confidence 9999999999963 44433 3457777888999999999999999999999999987643
No 59
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.93 E-value=3.7e-25 Score=161.08 Aligned_cols=134 Identities=26% Similarity=0.401 Sum_probs=116.0
Q ss_pred CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc--
Q 029875 3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-- 80 (186)
Q Consensus 3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-- 80 (186)
+...|.||++..+. +.+.+++..+.++||||+|+++|..++..+++++|++|+|||+++..+|+.+..|+..+....
T Consensus 26 ~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~ 104 (164)
T cd04175 26 FVEKYDPTIEDSYR-KQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDT 104 (164)
T ss_pred CCcccCCcchheEE-EEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC
Confidence 34568899997664 678889999999999999999999999999999999999999999999999999999987653
Q ss_pred CCCCEEEEEeCCCCCCc-ccChH-HHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHh
Q 029875 81 ENIPIVLCGNKVDVKNR-QVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLA 137 (186)
Q Consensus 81 ~~~p~ilv~nK~Dl~~~-~~~~~-~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 137 (186)
.+.|+++|+||+|+.+. .+..+ ...+++.++++++++||++|.|++++|.++++.+.
T Consensus 105 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~l~ 163 (164)
T cd04175 105 EDVPMILVGNKCDLEDERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDLVRQIN 163 (164)
T ss_pred CCCCEEEEEECCcchhccEEcHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHHHHHhh
Confidence 67999999999999753 33333 34677788899999999999999999999998763
No 60
>PLN03110 Rab GTPase; Provisional
Probab=99.93 E-value=3.8e-25 Score=168.49 Aligned_cols=137 Identities=31% Similarity=0.511 Sum_probs=122.2
Q ss_pred CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc-C
Q 029875 3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-E 81 (186)
Q Consensus 3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-~ 81 (186)
+...|.||+|.++..+.+.+++..+.++||||+|+++|..++..++++++++|+|||++++.+|+.+..|+..+.... .
T Consensus 37 ~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~ 116 (216)
T PLN03110 37 FCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADS 116 (216)
T ss_pred CCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCC
Confidence 456789999999999999999999999999999999999999999999999999999999999999999999988765 4
Q ss_pred CCCEEEEEeCCCCCC-cccChH-HHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCC
Q 029875 82 NIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD 139 (186)
Q Consensus 82 ~~p~ilv~nK~Dl~~-~~~~~~-~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 139 (186)
+.|+++|+||+|+.+ +.+..+ ...++..++++++++||++|.|++++|+.++..+.+.
T Consensus 117 ~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~SA~~g~~v~~lf~~l~~~i~~~ 176 (216)
T PLN03110 117 NIVIMMAGNKSDLNHLRSVAEEDGQALAEKEGLSFLETSALEATNVEKAFQTILLEIYHI 176 (216)
T ss_pred CCeEEEEEEChhcccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 799999999999864 444443 4567777889999999999999999999999988763
No 61
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.93 E-value=7.8e-25 Score=163.12 Aligned_cols=137 Identities=30% Similarity=0.541 Sum_probs=121.3
Q ss_pred CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc-C
Q 029875 3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-E 81 (186)
Q Consensus 3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-~ 81 (186)
+...|.||+|.++..+.+.+++..+.+++|||+|+++|..++..+++++|++|+|||++++.+|..+..|+..+.... .
T Consensus 25 ~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~ 104 (188)
T cd04125 25 FSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVYDVTDQESFENLKFWINEINRYARE 104 (188)
T ss_pred CCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCC
Confidence 445689999999998889999999999999999999999999999999999999999999999999999999998765 4
Q ss_pred CCCEEEEEeCCCCCC-cccChH-HHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCC
Q 029875 82 NIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD 139 (186)
Q Consensus 82 ~~p~ilv~nK~Dl~~-~~~~~~-~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 139 (186)
+.|+++|+||+|+.+ +.+... ...++...+++++++||++|.|++++|.++++.+...
T Consensus 105 ~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~i~~~f~~l~~~~~~~ 164 (188)
T cd04125 105 NVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNIPFFETSAKQSINVEEAFILLVKLIIKR 164 (188)
T ss_pred CCeEEEEEECCCCcccccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 689999999999974 444433 4567777888999999999999999999999998754
No 62
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.93 E-value=4.2e-25 Score=168.36 Aligned_cols=131 Identities=27% Similarity=0.408 Sum_probs=111.7
Q ss_pred cccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc-CCCC
Q 029875 6 WGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIP 84 (186)
Q Consensus 6 ~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-~~~p 84 (186)
.+.||+|.++..+.+ ..+.+.||||+|++.|..++..++++|+++|+|||++++.||+.+..|+..+.+.. .+.|
T Consensus 27 ~~~~Tig~~~~~~~~----~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~~~p 102 (220)
T cd04126 27 DTVSTVGGAFYLKQW----GPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCL 102 (220)
T ss_pred CCCCccceEEEEEEe----eEEEEEEEeCCCcccchhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCc
Confidence 478999999876654 57899999999999999999999999999999999999999999998888776653 5789
Q ss_pred EEEEEeCCCCCC--------------------cccCh-HHHHHHHHcC--------------CcEEEeccCCCCCchHHH
Q 029875 85 IVLCGNKVDVKN--------------------RQVKA-KQVTFHRKKN--------------LQYYEISAKSNYNFEKPF 129 (186)
Q Consensus 85 ~ilv~nK~Dl~~--------------------~~~~~-~~~~~~~~~~--------------~~~~~~Sa~~~~gi~~l~ 129 (186)
++|||||+|+.+ +.+.. +...++++.+ ++|++|||++|.||+++|
T Consensus 103 iIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~~~~~~~~~~~~~~E~SA~tg~~V~elf 182 (220)
T cd04126 103 FAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLDEDLSPAAEKMCFETSAKTGYNVDELF 182 (220)
T ss_pred EEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCccccccccccccccceEEEeeCCCCCCHHHHH
Confidence 999999999964 33333 3557887765 689999999999999999
Q ss_pred HHHHHHHhCCC
Q 029875 130 LYLARKLAGDP 140 (186)
Q Consensus 130 ~~l~~~i~~~~ 140 (186)
..+++.+....
T Consensus 183 ~~i~~~~~~~~ 193 (220)
T cd04126 183 EYLFNLVLPLI 193 (220)
T ss_pred HHHHHHHHHHH
Confidence 99999887543
No 63
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.93 E-value=5.4e-25 Score=160.28 Aligned_cols=134 Identities=33% Similarity=0.562 Sum_probs=119.2
Q ss_pred CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcC-
Q 029875 3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE- 81 (186)
Q Consensus 3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~- 81 (186)
+...+.||+|.++..+.+.+++..+.+++|||||+++|..++..++++++++|+|||++++.+|..+..|+..+.+...
T Consensus 28 ~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~ 107 (165)
T cd01868 28 FNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKKQTFENVERWLKELRDHADS 107 (165)
T ss_pred CCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCC
Confidence 4567899999999999999999999999999999999999999999999999999999999999999999999988764
Q ss_pred CCCEEEEEeCCCCCC-cccCh-HHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHH
Q 029875 82 NIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 136 (186)
Q Consensus 82 ~~p~ilv~nK~Dl~~-~~~~~-~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 136 (186)
+.|+++|+||+|+.+ +.+.. +...++...+++++++||++|.|++++|++++..+
T Consensus 108 ~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 164 (165)
T cd01868 108 NIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQLLTEI 164 (165)
T ss_pred CCeEEEEEECccccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 599999999999975 33333 34577777788999999999999999999999775
No 64
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.93 E-value=6.8e-25 Score=159.44 Aligned_cols=133 Identities=26% Similarity=0.412 Sum_probs=114.7
Q ss_pred CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc--
Q 029875 3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-- 80 (186)
Q Consensus 3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-- 80 (186)
+...|.||++ +++...+.+++..+.++||||+|+++|..++..++++||++|+|||++++.||+++..|+..+.+..
T Consensus 26 ~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~ 104 (163)
T cd04176 26 FIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGY 104 (163)
T ss_pred CCCCCCCchh-heEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC
Confidence 3456789987 6666788889999999999999999999999999999999999999999999999999999888764
Q ss_pred CCCCEEEEEeCCCCCC-cccCh-HHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHH
Q 029875 81 ENIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 136 (186)
Q Consensus 81 ~~~p~ilv~nK~Dl~~-~~~~~-~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 136 (186)
.+.|+++|+||+|+.+ ..+.. +...++...+.+++++||++|.|+.++|.++++.+
T Consensus 105 ~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~l 162 (163)
T cd04176 105 EKVPIILVGNKVDLESEREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEIVRQM 162 (163)
T ss_pred CCCCEEEEEECccchhcCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHHHhc
Confidence 5799999999999964 33333 34566777788999999999999999999998765
No 65
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.93 E-value=5.8e-25 Score=163.48 Aligned_cols=137 Identities=25% Similarity=0.328 Sum_probs=117.0
Q ss_pred CCccccccceEEEEEEEEEEC-CeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHH-HHHHHHHhhc
Q 029875 3 VSVWGKATIGVEVHPLDFFTN-CGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVC 80 (186)
Q Consensus 3 ~~~~~~~Tig~~~~~~~~~~~-~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~-~~~~~~~~~~ 80 (186)
+...|.||++.++... +... +..+.++||||+|+++|..++..++++||++|+|||++++.||+.+. .|+..+.+..
T Consensus 25 ~~~~~~~t~~~~~~~~-i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~ 103 (187)
T cd04132 25 FPEEYVPTVFENYVTN-IQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHFC 103 (187)
T ss_pred CCCCCCCeeeeeeEEE-EEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC
Confidence 4567899999888654 5554 78899999999999999999999999999999999999999999985 6998887766
Q ss_pred CCCCEEEEEeCCCCCCc-----ccCh-HHHHHHHHcCC-cEEEeccCCCCCchHHHHHHHHHHhCCC
Q 029875 81 ENIPIVLCGNKVDVKNR-----QVKA-KQVTFHRKKNL-QYYEISAKSNYNFEKPFLYLARKLAGDP 140 (186)
Q Consensus 81 ~~~p~ilv~nK~Dl~~~-----~~~~-~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~i~~~~ 140 (186)
++.|+++|+||+|+... .+.. +..+++..++. +++++||++|.||.++|..+++.+....
T Consensus 104 ~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~~~ 170 (187)
T cd04132 104 PGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLECSAKTMENVEEVFDTAIEEALKKE 170 (187)
T ss_pred CCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEccCCCCCCHHHHHHHHHHHHHhhh
Confidence 78999999999999642 2223 34578888887 8999999999999999999999998654
No 66
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.93 E-value=7.1e-25 Score=166.42 Aligned_cols=138 Identities=25% Similarity=0.458 Sum_probs=120.8
Q ss_pred CCccccccceEEEEEEEEEE-CCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc-
Q 029875 3 VSVWGKATIGVEVHPLDFFT-NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC- 80 (186)
Q Consensus 3 ~~~~~~~Tig~~~~~~~~~~-~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~- 80 (186)
+...+.||+|.++..+.+.+ ++..+.+++|||+|+++|..++..++++++++|+|||++++.||+.+..|+..+....
T Consensus 27 ~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~ 106 (211)
T cd04111 27 FAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQ 106 (211)
T ss_pred CCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcC
Confidence 45668899999999888887 5778999999999999999999999999999999999999999999999999988764
Q ss_pred -CCCCEEEEEeCCCCCC-cccCh-HHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCCC
Q 029875 81 -ENIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDP 140 (186)
Q Consensus 81 -~~~p~ilv~nK~Dl~~-~~~~~-~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~ 140 (186)
...|++||+||+|+.+ +.+.. +...+++.++++++++||++|.|++++|++|++.+.+..
T Consensus 107 ~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~l~~~~~~~~ 169 (211)
T cd04111 107 PHRPVFILVGHKCDLESQRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFELLTQEIYERI 169 (211)
T ss_pred CCCCeEEEEEEccccccccccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHHHHHHHHh
Confidence 3578899999999975 33433 355788888899999999999999999999999887654
No 67
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.93 E-value=7.7e-25 Score=159.23 Aligned_cols=134 Identities=23% Similarity=0.475 Sum_probs=117.1
Q ss_pred CCccccccceEEEEEEEEEEC-CeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcC
Q 029875 3 VSVWGKATIGVEVHPLDFFTN-CGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE 81 (186)
Q Consensus 3 ~~~~~~~Tig~~~~~~~~~~~-~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~ 81 (186)
+...|.||+|.++..+.+.++ +..+.+.+|||+|++.+..++..+++++|++++|||++++.+|..+..|++.+.....
T Consensus 27 ~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~ 106 (164)
T cd04101 27 FPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTASK 106 (164)
T ss_pred cCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC
Confidence 567899999999988888775 6779999999999999999999999999999999999999999999999999888766
Q ss_pred CCCEEEEEeCCCCCCc-ccChH-HHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHH
Q 029875 82 NIPIVLCGNKVDVKNR-QVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 136 (186)
Q Consensus 82 ~~p~ilv~nK~Dl~~~-~~~~~-~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 136 (186)
+.|+++|+||+|+.+. .+... ...+...++++++++||++|.|++++|..+++.+
T Consensus 107 ~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 163 (164)
T cd04101 107 HMPGVLVGNKMDLADKAEVTDAQAQAFAQANQLKFFKTSALRGVGYEEPFESLARAF 163 (164)
T ss_pred CCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEeCCCCCChHHHHHHHHHHh
Confidence 7999999999999653 33333 3456667788999999999999999999999875
No 68
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.93 E-value=1.9e-24 Score=161.57 Aligned_cols=135 Identities=25% Similarity=0.423 Sum_probs=119.5
Q ss_pred cccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCE
Q 029875 6 WGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 85 (186)
Q Consensus 6 ~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ 85 (186)
.|.||+|.++..+.+.+++..+.+.+|||+|++++..++..+++++|++|+|||++++.+|+.+..|+..+....++.|+
T Consensus 29 ~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~pi 108 (193)
T cd04118 29 PYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLEEHCKI 108 (193)
T ss_pred CcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhcCCCCCE
Confidence 68999999998889999999999999999999999999999999999999999999999999999999999877668999
Q ss_pred EEEEeCCCCCCc-----ccCh-HHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCCC
Q 029875 86 VLCGNKVDVKNR-----QVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDP 140 (186)
Q Consensus 86 ilv~nK~Dl~~~-----~~~~-~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~ 140 (186)
++|+||+|+.+. .+.. +..+++..++.+++++||++|.|++++|+++++.+.+..
T Consensus 109 ilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~~~~~~ 169 (193)
T cd04118 109 YLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELFQKVAEDFVSRA 169 (193)
T ss_pred EEEEEcccccccccccCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHhc
Confidence 999999998632 2222 344677777889999999999999999999999997654
No 69
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.93 E-value=2.7e-24 Score=158.09 Aligned_cols=131 Identities=21% Similarity=0.341 Sum_probs=112.2
Q ss_pred CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHH-HHHHHHHhhcC
Q 029875 3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCE 81 (186)
Q Consensus 3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~-~~~~~~~~~~~ 81 (186)
+..+|.||+ .+++...+.+++..+.+++|||+|+++|..++..+++++|++|+|||++++.||+.+. .|+..+....+
T Consensus 25 ~~~~~~~t~-~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~ 103 (173)
T cd04130 25 YPTEYVPTA-FDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNP 103 (173)
T ss_pred CCCCCCCce-eeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCC
Confidence 456788997 4666677888999999999999999999999999999999999999999999999984 79988887667
Q ss_pred CCCEEEEEeCCCCCCc-------------ccCh-HHHHHHHHcCC-cEEEeccCCCCCchHHHHHHHH
Q 029875 82 NIPIVLCGNKVDVKNR-------------QVKA-KQVTFHRKKNL-QYYEISAKSNYNFEKPFLYLAR 134 (186)
Q Consensus 82 ~~p~ilv~nK~Dl~~~-------------~~~~-~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~ 134 (186)
+.|+++|+||+|+... .+.. +...+++.++. +++++||++|.|++++|+.++.
T Consensus 104 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~lf~~~~~ 171 (173)
T cd04130 104 KAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALTQKNLKEVFDTAIL 171 (173)
T ss_pred CCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCCCCCHHHHHHHHHh
Confidence 8999999999998632 2333 35578888887 8999999999999999998874
No 70
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.93 E-value=1.3e-24 Score=158.44 Aligned_cols=133 Identities=32% Similarity=0.549 Sum_probs=116.8
Q ss_pred CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc-C
Q 029875 3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-E 81 (186)
Q Consensus 3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-~ 81 (186)
+...+.||+|.++..+.+.+++..+.++||||||++.|..++..+++++|++++|||++++.+|+.+..|+..+.... .
T Consensus 28 ~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~ 107 (165)
T cd01864 28 FSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGAS 107 (165)
T ss_pred CcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCC
Confidence 456788999999998899999988999999999999999999999999999999999999999999999999998754 5
Q ss_pred CCCEEEEEeCCCCCCc-ccCh-HHHHHHHHcCC-cEEEeccCCCCCchHHHHHHHHH
Q 029875 82 NIPIVLCGNKVDVKNR-QVKA-KQVTFHRKKNL-QYYEISAKSNYNFEKPFLYLARK 135 (186)
Q Consensus 82 ~~p~ilv~nK~Dl~~~-~~~~-~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~ 135 (186)
+.|+++|+||+|+.+. .+.. ....+++.++. .++++||++|.|++++|..+++.
T Consensus 108 ~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~l~~~ 164 (165)
T cd01864 108 NVVLLLIGNKCDLEEQREVLFEEACTLAEKNGMLAVLETSAKESQNVEEAFLLMATE 164 (165)
T ss_pred CCcEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEEECCCCCCHHHHHHHHHHh
Confidence 7999999999999743 3333 35577777775 68999999999999999999875
No 71
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.93 E-value=2.5e-24 Score=157.57 Aligned_cols=136 Identities=31% Similarity=0.529 Sum_probs=120.3
Q ss_pred CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc-C
Q 029875 3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-E 81 (186)
Q Consensus 3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-~ 81 (186)
+...+.||+|.++....+.+++..+.+.+|||+|+++|..++..+++++|++|+|||++++.||+.+..|+..++... +
T Consensus 29 ~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~~ 108 (168)
T cd01866 29 FQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSNS 108 (168)
T ss_pred CCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCC
Confidence 345678999999999999999999999999999999999999999999999999999999999999999999998764 6
Q ss_pred CCCEEEEEeCCCCCC-cccChH-HHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhC
Q 029875 82 NIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG 138 (186)
Q Consensus 82 ~~p~ilv~nK~Dl~~-~~~~~~-~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 138 (186)
+.|+++|+||+|+.+ +....+ ...++..++++++++||++|.|++++|..+++.+.+
T Consensus 109 ~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~~~~~~~~~~~ 167 (168)
T cd01866 109 NMTIMLIGNKCDLESRREVSYEEGEAFAKEHGLIFMETSAKTASNVEEAFINTAKEIYE 167 (168)
T ss_pred CCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 899999999999974 333333 446778888999999999999999999999988754
No 72
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.93 E-value=2.2e-24 Score=155.91 Aligned_cols=133 Identities=26% Similarity=0.441 Sum_probs=115.5
Q ss_pred CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc--
Q 029875 3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-- 80 (186)
Q Consensus 3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-- 80 (186)
+...|.||++..+ .+.+.+++..+.+++|||+|+++|..++..++++++++++|||+++..+|+.+..|+..+.+..
T Consensus 26 ~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~ 104 (162)
T cd04138 26 FVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDS 104 (162)
T ss_pred CcCCcCCcchheE-EEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC
Confidence 4557889998665 5667788989999999999999999999999999999999999999999999999999888764
Q ss_pred CCCCEEEEEeCCCCCCcccChH-HHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHH
Q 029875 81 ENIPIVLCGNKVDVKNRQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 136 (186)
Q Consensus 81 ~~~p~ilv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 136 (186)
.+.|+++|+||+|+.++..... ...+++..+++++++||++|.|++++|.++++.+
T Consensus 105 ~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 161 (162)
T cd04138 105 DDVPMVLVGNKCDLAARTVSSRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTLVREI 161 (162)
T ss_pred CCCCEEEEEECcccccceecHHHHHHHHHHhCCeEEEecCCCCCCHHHHHHHHHHHh
Confidence 5789999999999986554443 4567777889999999999999999999998765
No 73
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.92 E-value=3e-24 Score=156.70 Aligned_cols=131 Identities=24% Similarity=0.292 Sum_probs=112.0
Q ss_pred CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc--
Q 029875 3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-- 80 (186)
Q Consensus 3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-- 80 (186)
+...|.||++..+ .+.+..++..+.+++|||+|+++|..++..++++++++|+|||++++.||+.+..|+..+.+..
T Consensus 26 f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~ 104 (165)
T cd04140 26 FRESYIPTIEDTY-RQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSVTSKQSLEELKPIYELICEIKGN 104 (165)
T ss_pred CCCCcCCcchheE-EEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcC
Confidence 4567899998665 4566677888999999999999999999999999999999999999999999999988877653
Q ss_pred --CCCCEEEEEeCCCCCC-cccChH-HHHHHHHcCCcEEEeccCCCCCchHHHHHHHH
Q 029875 81 --ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 134 (186)
Q Consensus 81 --~~~p~ilv~nK~Dl~~-~~~~~~-~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 134 (186)
++.|+++|+||+|+.+ +.+..+ ...++..+++++++|||++|.|++++|++|+.
T Consensus 105 ~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~~g~~v~~~f~~l~~ 162 (165)
T cd04140 105 NIEKIPIMLVGNKCDESHKREVSSNEGAACATEWNCAFMETSAKTNHNVQELFQELLN 162 (165)
T ss_pred CCCCCCEEEEEECccccccCeecHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHHHh
Confidence 5789999999999975 444443 45677777889999999999999999999874
No 74
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.92 E-value=3.2e-24 Score=155.59 Aligned_cols=134 Identities=32% Similarity=0.556 Sum_probs=118.6
Q ss_pred CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc-C
Q 029875 3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-E 81 (186)
Q Consensus 3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-~ 81 (186)
+...+.||+|.++..+.+.+++..+.+++|||+|+++|..++..++++++++|+|||++++.+|..+..|+..+.... +
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~ 104 (161)
T cd04113 25 FKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITNRTSFEALPTWLSDARALASP 104 (161)
T ss_pred CCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCC
Confidence 456788999999999999999999999999999999999999999999999999999999999999999999887665 6
Q ss_pred CCCEEEEEeCCCCCC-cccCh-HHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHH
Q 029875 82 NIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 136 (186)
Q Consensus 82 ~~p~ilv~nK~Dl~~-~~~~~-~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 136 (186)
+.|+++|+||+|+.. +.+.. +...+++..+++++++||++|.|++++|.++++.+
T Consensus 105 ~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~~~~~~ 161 (161)
T cd04113 105 NIVVILVGNKSDLADQREVTFLEASRFAQENGLLFLETSALTGENVEEAFLKCARSI 161 (161)
T ss_pred CCeEEEEEEchhcchhccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHhC
Confidence 899999999999974 33333 34577888889999999999999999999998753
No 75
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.92 E-value=6.7e-24 Score=155.61 Aligned_cols=134 Identities=31% Similarity=0.544 Sum_probs=117.8
Q ss_pred CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccC-CccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc-
Q 029875 3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFG-GLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC- 80 (186)
Q Consensus 3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~-~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~- 80 (186)
+...+.||+|.++....+.+++..+.+++|||+|+++|. .++..+++++|++++|||++++.+|+.+..|+..+....
T Consensus 27 ~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~ 106 (170)
T cd04115 27 FPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSL 106 (170)
T ss_pred CCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcC
Confidence 456789999999999999999999999999999999886 578899999999999999999999999999999988764
Q ss_pred -CCCCEEEEEeCCCCCC-cccChH-HHHHHHHcCCcEEEeccCC---CCCchHHHHHHHHHH
Q 029875 81 -ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKS---NYNFEKPFLYLARKL 136 (186)
Q Consensus 81 -~~~p~ilv~nK~Dl~~-~~~~~~-~~~~~~~~~~~~~~~Sa~~---~~gi~~l~~~l~~~i 136 (186)
.+.|+++|+||+|+.+ +++..+ ..+++..++++|+++||++ +.|++++|..+++.+
T Consensus 107 ~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~~~~i~~~f~~l~~~~ 168 (170)
T cd04115 107 PNEVPRILVGNKCDLREQIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEAIFMTLAHKL 168 (170)
T ss_pred CCCCCEEEEEECccchhhcCCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHHHHHHHHh
Confidence 5799999999999975 333433 4577888889999999999 889999999999876
No 76
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.92 E-value=6.5e-24 Score=154.14 Aligned_cols=133 Identities=29% Similarity=0.440 Sum_probs=114.0
Q ss_pred CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc--
Q 029875 3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-- 80 (186)
Q Consensus 3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-- 80 (186)
+...|.||++..+ .....+++..+.+++|||||+++|..++..++++++++++|||+++..+|+.+..|+..+.+..
T Consensus 27 ~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~ 105 (164)
T cd04145 27 FVTDYDPTIEDSY-TKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDR 105 (164)
T ss_pred CCcccCCCccceE-EEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC
Confidence 3467889998555 4566789999999999999999999999999999999999999999999999999999887753
Q ss_pred CCCCEEEEEeCCCCCCc-ccCh-HHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHH
Q 029875 81 ENIPIVLCGNKVDVKNR-QVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 136 (186)
Q Consensus 81 ~~~p~ilv~nK~Dl~~~-~~~~-~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 136 (186)
.+.|+++++||+|+... .... ...++++.++++++++||++|.|++++|+++++.+
T Consensus 106 ~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 163 (164)
T cd04145 106 DEFPMILVGNKADLEHQRKVSREEGQELARKLKIPYIETSAKDRLNVDKAFHDLVRVI 163 (164)
T ss_pred CCCCEEEEeeCccccccceecHHHHHHHHHHcCCcEEEeeCCCCCCHHHHHHHHHHhh
Confidence 57899999999999753 3333 34577777889999999999999999999998765
No 77
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.92 E-value=8e-24 Score=153.53 Aligned_cols=136 Identities=34% Similarity=0.599 Sum_probs=121.4
Q ss_pred CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc-C
Q 029875 3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-E 81 (186)
Q Consensus 3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-~ 81 (186)
++..+.||++.++....+.+++..+.+++||+||++.|..++..+++++|++|+|||++++.+++.+..|+..+.... +
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~ 104 (164)
T smart00175 25 FSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVYDITNRESFENLKNWLKELREYADP 104 (164)
T ss_pred CCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCC
Confidence 466788999999999999999999999999999999999999999999999999999999999999999999988765 6
Q ss_pred CCCEEEEEeCCCCCC-cccChH-HHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhC
Q 029875 82 NIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG 138 (186)
Q Consensus 82 ~~p~ilv~nK~Dl~~-~~~~~~-~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 138 (186)
+.|+++|+||+|+.. .....+ ...+++.++++++++||++|.|++++|+.+++.+.+
T Consensus 105 ~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~l~~~i~~~~~~ 163 (164)
T smart00175 105 NVVIMLVGNKSDLEDQRQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELAREILK 163 (164)
T ss_pred CCeEEEEEEchhcccccCCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHhh
Confidence 899999999999875 444433 557788888999999999999999999999998754
No 78
>PLN03108 Rab family protein; Provisional
Probab=99.92 E-value=5.7e-24 Score=161.34 Aligned_cols=137 Identities=31% Similarity=0.515 Sum_probs=121.8
Q ss_pred CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc-C
Q 029875 3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-E 81 (186)
Q Consensus 3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-~ 81 (186)
+...|.||+|.++....+.+++..+.+++|||+|++.|..++..+++++|++|+|||++++.+|..+..|+..+.... .
T Consensus 31 ~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~ 110 (210)
T PLN03108 31 FQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANA 110 (210)
T ss_pred CCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcCC
Confidence 456788999999998889999999999999999999999999999999999999999999999999999998887654 5
Q ss_pred CCCEEEEEeCCCCCCc-ccCh-HHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCC
Q 029875 82 NIPIVLCGNKVDVKNR-QVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD 139 (186)
Q Consensus 82 ~~p~ilv~nK~Dl~~~-~~~~-~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 139 (186)
+.|+++|+||+|+.+. .+.. +..++++.++++++++||++|.||+++|.++++.+...
T Consensus 111 ~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~e~f~~l~~~~~~~ 170 (210)
T PLN03108 111 NMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAKIYKK 170 (210)
T ss_pred CCcEEEEEECccCccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 7999999999999753 3443 35678888899999999999999999999999998754
No 79
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.92 E-value=8.6e-24 Score=153.69 Aligned_cols=134 Identities=27% Similarity=0.431 Sum_probs=114.9
Q ss_pred CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc--
Q 029875 3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-- 80 (186)
Q Consensus 3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-- 80 (186)
+...|.||++ +...+.+.+++..+.+++|||||+++|..++..++++++++++|||++++.+|+.+..|...+.+..
T Consensus 25 ~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~ 103 (164)
T smart00173 25 FVDDYDPTIE-DSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDR 103 (164)
T ss_pred CCcccCCchh-hhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC
Confidence 4557788887 4445677788899999999999999999999999999999999999999999999999998887654
Q ss_pred CCCCEEEEEeCCCCCC-cccChH-HHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHh
Q 029875 81 ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLA 137 (186)
Q Consensus 81 ~~~p~ilv~nK~Dl~~-~~~~~~-~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 137 (186)
.+.|+++|+||+|+.+ +....+ ...+++.++.+++++||++|.|++++|+++++.+.
T Consensus 104 ~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 162 (164)
T smart00173 104 DDVPIVLVGNKCDLESERVVSTEEGKELARQWGCPFLETSAKERVNVDEAFYDLVREIR 162 (164)
T ss_pred CCCCEEEEEECccccccceEcHHHHHHHHHHcCCEEEEeecCCCCCHHHHHHHHHHHHh
Confidence 4789999999999975 333433 44677788899999999999999999999998764
No 80
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.92 E-value=1.4e-23 Score=152.12 Aligned_cols=132 Identities=36% Similarity=0.562 Sum_probs=117.8
Q ss_pred CccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc--C
Q 029875 4 SVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--E 81 (186)
Q Consensus 4 ~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~--~ 81 (186)
...+.||+|.++....+.+++..+.+.+|||+|++.+..++..+++++|++++|||++++.+|+.+..|+..+.... .
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~ 105 (161)
T cd01863 26 DPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVYDVTRRDTFTNLETWLNELETYSTNN 105 (161)
T ss_pred CcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCC
Confidence 45689999999998888888889999999999999999999999999999999999999999999999999988764 5
Q ss_pred CCCEEEEEeCCCCCCcccCh-HHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHH
Q 029875 82 NIPIVLCGNKVDVKNRQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK 135 (186)
Q Consensus 82 ~~p~ilv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 135 (186)
+.|+++|+||+|+....... +...++...+++++++||++|.|++++|+.+++.
T Consensus 106 ~~~~~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~~~~~ 160 (161)
T cd01863 106 DIVKMLVGNKIDKENREVTREEGLKFARKHNMLFIETSAKTRDGVQQAFEELVEK 160 (161)
T ss_pred CCcEEEEEECCcccccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHHHh
Confidence 79999999999998555444 3557888889999999999999999999999875
No 81
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.92 E-value=8.5e-24 Score=158.33 Aligned_cols=135 Identities=28% Similarity=0.429 Sum_probs=123.0
Q ss_pred CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc--
Q 029875 3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-- 80 (186)
Q Consensus 3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-- 80 (186)
+...|.||+. +.+.+.+.+++..+.+.|+||+|++.|..+...++++++++++||+++++.||+.+..+.+.+.+..
T Consensus 28 f~~~y~ptie-d~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lVysitd~~SF~~~~~l~~~I~r~~~~ 106 (196)
T KOG0395|consen 28 FVEDYDPTIE-DSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLLVYSITDRSSFEEAKQLREQILRVKGR 106 (196)
T ss_pred cccccCCCcc-ccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCc
Confidence 4567999998 8888899999999999999999999999999999999999999999999999999999999996543
Q ss_pred CCCCEEEEEeCCCCCC-cccChH-HHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhC
Q 029875 81 ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG 138 (186)
Q Consensus 81 ~~~p~ilv~nK~Dl~~-~~~~~~-~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 138 (186)
...|+++||||+|+.. +.+..+ ...++..++++|+|+||+.+.+++++|..|++.+..
T Consensus 107 ~~~PivlVGNK~Dl~~~R~V~~eeg~~la~~~~~~f~E~Sak~~~~v~~~F~~L~r~~~~ 166 (196)
T KOG0395|consen 107 DDVPIILVGNKCDLERERQVSEEEGKALARSWGCAFIETSAKLNYNVDEVFYELVREIRL 166 (196)
T ss_pred CCCCEEEEEEcccchhccccCHHHHHHHHHhcCCcEEEeeccCCcCHHHHHHHHHHHHHh
Confidence 4689999999999986 666655 568899999999999999999999999999998876
No 82
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.92 E-value=1.1e-23 Score=152.49 Aligned_cols=133 Identities=30% Similarity=0.486 Sum_probs=117.1
Q ss_pred CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcC-
Q 029875 3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE- 81 (186)
Q Consensus 3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~- 81 (186)
+...+.||+|.++....+.+++..+++++|||||+.++..++..++++++++|+|||++++.+|+.+..|+..+.+...
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~ 104 (161)
T cd01861 25 FDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGN 104 (161)
T ss_pred CCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCC
Confidence 4557899999999999999999889999999999999999999999999999999999999999999999999877653
Q ss_pred CCCEEEEEeCCCCCC-cccChH-HHHHHHHcCCcEEEeccCCCCCchHHHHHHHHH
Q 029875 82 NIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK 135 (186)
Q Consensus 82 ~~p~ilv~nK~Dl~~-~~~~~~-~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 135 (186)
+.|+++++||+|+.+ +....+ ...+++..+++++++||++|.|++++|.++.+.
T Consensus 105 ~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~ 160 (161)
T cd01861 105 DVIIVLVGNKTDLSDKRQVSTEEGEKKAKELNAMFIETSAKAGHNVKELFRKIASA 160 (161)
T ss_pred CCEEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHHHh
Confidence 699999999999953 333443 456677778999999999999999999999875
No 83
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.92 E-value=1.8e-23 Score=157.24 Aligned_cols=139 Identities=17% Similarity=0.150 Sum_probs=113.5
Q ss_pred CCCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCc--------cccccccCcEEEEEEeCCChhhHHhHHHHH
Q 029875 2 NVSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL--------RDGYYIHGQCAIIMFDVTARLTYKNVPTWH 73 (186)
Q Consensus 2 ~~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~--------~~~~~~~ad~vilv~D~~~~~s~~~i~~~~ 73 (186)
+++..|.||++.+++...+.+++..+.++||||+|...+... +...+++||++|+|||++++.||+.+..|+
T Consensus 24 ~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ad~iilv~D~~~~~S~~~~~~~~ 103 (198)
T cd04142 24 EFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRNSRAFILVYDICSPDSFHYVKLLR 103 (198)
T ss_pred CCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhccCCEEEEEEECCCHHHHHHHHHHH
Confidence 356679999998988778888999999999999998765322 334578999999999999999999999999
Q ss_pred HHHHhhc----CCCCEEEEEeCCCCCC-cccChH-HHHHHH-HcCCcEEEeccCCCCCchHHHHHHHHHHhCCC
Q 029875 74 RDLCRVC----ENIPIVLCGNKVDVKN-RQVKAK-QVTFHR-KKNLQYYEISAKSNYNFEKPFLYLARKLAGDP 140 (186)
Q Consensus 74 ~~~~~~~----~~~p~ilv~nK~Dl~~-~~~~~~-~~~~~~-~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~ 140 (186)
+.+.+.. .+.|+++|+||+|+.. +.+..+ ...++. .++++|+++||++|.||+++|..+++.+...-
T Consensus 104 ~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~~v~~lf~~i~~~~~~~~ 177 (198)
T cd04142 104 QQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKYNWHILLLFKELLISATTRG 177 (198)
T ss_pred HHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCcEEEecCCCCCCHHHHHHHHHHHhhccC
Confidence 9887753 5799999999999965 333333 334543 56889999999999999999999999887653
No 84
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.92 E-value=1.3e-23 Score=152.64 Aligned_cols=125 Identities=17% Similarity=0.262 Sum_probs=102.8
Q ss_pred CccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc--C
Q 029875 4 SVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--E 81 (186)
Q Consensus 4 ~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~--~ 81 (186)
...+.|| +..+ ...+.+++..+.+++|||+|++. ..+++++|++++|||++++.||+++..|+..+.... .
T Consensus 26 ~~~~~~~-~~~~-~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~~ 98 (158)
T cd04103 26 VQLESPE-GGRF-KKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRNIS 98 (158)
T ss_pred CCCCCCC-ccce-EEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC
Confidence 3455555 4455 46788899999999999999975 346789999999999999999999999999998775 5
Q ss_pred CCCEEEEEeCCCCC---CcccChH-HHHHHHHc-CCcEEEeccCCCCCchHHHHHHHHH
Q 029875 82 NIPIVLCGNKVDVK---NRQVKAK-QVTFHRKK-NLQYYEISAKSNYNFEKPFLYLARK 135 (186)
Q Consensus 82 ~~p~ilv~nK~Dl~---~~~~~~~-~~~~~~~~-~~~~~~~Sa~~~~gi~~l~~~l~~~ 135 (186)
+.|+++||||+|+. .+.+..+ ..++++.. ++.|++|||++|.||+++|..+++.
T Consensus 99 ~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~~~~~ 157 (158)
T cd04103 99 EIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETCATYGLNVERVFQEAAQK 157 (158)
T ss_pred CCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHHHHhh
Confidence 78999999999984 2444443 44777765 5899999999999999999999865
No 85
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.91 E-value=1.2e-23 Score=163.12 Aligned_cols=133 Identities=25% Similarity=0.364 Sum_probs=113.2
Q ss_pred CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhh---
Q 029875 3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--- 79 (186)
Q Consensus 3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~--- 79 (186)
+...|.||++ ++..+.+.+++..+.++||||+|++.|..++..++.++|++|+|||++++.||+.+..|++.+.+.
T Consensus 25 f~~~y~pTi~-d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~ 103 (247)
T cd04143 25 FEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVFSLDNRESFEEVCRLREQILETKSC 103 (247)
T ss_pred CCCCCCCChh-HhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcc
Confidence 4557899998 777788889999999999999999999999999999999999999999999999999999998764
Q ss_pred -------cCCCCEEEEEeCCCCCC-cccChH-HHHHHHH-cCCcEEEeccCCCCCchHHHHHHHHHH
Q 029875 80 -------CENIPIVLCGNKVDVKN-RQVKAK-QVTFHRK-KNLQYYEISAKSNYNFEKPFLYLARKL 136 (186)
Q Consensus 80 -------~~~~p~ilv~nK~Dl~~-~~~~~~-~~~~~~~-~~~~~~~~Sa~~~~gi~~l~~~l~~~i 136 (186)
..+.|+++|+||+|+.. +.+..+ ..+++.. .++.++++||++|.||+++|.+|+...
T Consensus 104 ~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~~~~~~~evSAktg~gI~elf~~L~~~~ 170 (247)
T cd04143 104 LKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSNLDEMFRALFSLA 170 (247)
T ss_pred cccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 14789999999999974 444433 3344443 357899999999999999999999865
No 86
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.91 E-value=4.9e-23 Score=151.18 Aligned_cols=133 Identities=21% Similarity=0.283 Sum_probs=112.3
Q ss_pred CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHH-HHHHHHHhhcC
Q 029875 3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCE 81 (186)
Q Consensus 3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~-~~~~~~~~~~~ 81 (186)
+...|.||++.. +...+.+++..+.+++|||+|++.|..++..++++++++|+|||++++.+|+.+. .|+..+....+
T Consensus 25 ~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~~~ 103 (174)
T cd04135 25 FPEEYVPTVFDH-YAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAP 103 (174)
T ss_pred CCCCCCCceeee-eEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC
Confidence 445688998744 4457788999999999999999999999999999999999999999999999985 68888876667
Q ss_pred CCCEEEEEeCCCCCCc-------------ccCh-HHHHHHHHcCC-cEEEeccCCCCCchHHHHHHHHHH
Q 029875 82 NIPIVLCGNKVDVKNR-------------QVKA-KQVTFHRKKNL-QYYEISAKSNYNFEKPFLYLARKL 136 (186)
Q Consensus 82 ~~p~ilv~nK~Dl~~~-------------~~~~-~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~i 136 (186)
+.|+++|+||+|+.+. .+.. +...+++..+. ++++|||++|.|++++|+.+++.+
T Consensus 104 ~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~~f~~~~~~~ 173 (174)
T cd04135 104 NVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALTQKGLKTVFDEAILAI 173 (174)
T ss_pred CCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCcCCCHHHHHHHHHHHh
Confidence 8999999999998642 2222 34567777775 799999999999999999999875
No 87
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.91 E-value=2.6e-23 Score=152.60 Aligned_cols=133 Identities=16% Similarity=0.089 Sum_probs=114.0
Q ss_pred ccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCC
Q 029875 5 VWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP 84 (186)
Q Consensus 5 ~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p 84 (186)
..|.||+|.++....+.+++..+.+.+||++|++.+..++..++++||++|+|||++++.+|+.+..|+..+... .+.|
T Consensus 32 ~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~~~~~-~~~p 110 (169)
T cd01892 32 NAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVACLVYDSSDPKSFSYCAEVYKKYFML-GEIP 110 (169)
T ss_pred ccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEEEEEEeCCCHHHHHHHHHHHHHhccC-CCCe
Confidence 679999999998888888999999999999999999999999999999999999999999999998998876432 4799
Q ss_pred EEEEEeCCCCCCc-cc-ChHHHHHHHHcCC-cEEEeccCCCCCchHHHHHHHHHHhC
Q 029875 85 IVLCGNKVDVKNR-QV-KAKQVTFHRKKNL-QYYEISAKSNYNFEKPFLYLARKLAG 138 (186)
Q Consensus 85 ~ilv~nK~Dl~~~-~~-~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~i~~ 138 (186)
+++|+||+|+.+. .. ..+...+++.+++ .++++||++|.|++++|..+++.+..
T Consensus 111 ~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~~~~ 167 (169)
T cd01892 111 CLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHFSSKLGDSSNELFTKLATAAQY 167 (169)
T ss_pred EEEEEEcccccccccccccCHHHHHHHcCCCCCEEEEeccCccHHHHHHHHHHHhhC
Confidence 9999999999643 22 2234466777776 47999999999999999999998763
No 88
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.91 E-value=3.7e-23 Score=150.12 Aligned_cols=133 Identities=32% Similarity=0.552 Sum_probs=118.3
Q ss_pred CccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc-CC
Q 029875 4 SVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-EN 82 (186)
Q Consensus 4 ~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-~~ 82 (186)
...+.||+|.++..+.+.+++..+.+.+|||+|++++..++..++++++++|+|||++++.+|.....|+..+.... .+
T Consensus 27 ~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~ 106 (163)
T cd01860 27 SENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNASPN 106 (163)
T ss_pred CCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCC
Confidence 44689999999999999999999999999999999999999999999999999999999999999999999988776 67
Q ss_pred CCEEEEEeCCCCCC-cccCh-HHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHH
Q 029875 83 IPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 136 (186)
Q Consensus 83 ~p~ilv~nK~Dl~~-~~~~~-~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 136 (186)
.|+++++||+|+.. +.... ....++...+++++++||++|.|+.++|.++++.+
T Consensus 107 ~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~l 162 (163)
T cd01860 107 IIIALVGNKADLESKRQVSTEEAQEYADENGLLFFETSAKTGENVNELFTEIAKKL 162 (163)
T ss_pred CeEEEEEECccccccCcCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 99999999999873 33333 34567778889999999999999999999999876
No 89
>PLN03118 Rab family protein; Provisional
Probab=99.91 E-value=4.1e-23 Score=156.66 Aligned_cols=137 Identities=31% Similarity=0.492 Sum_probs=117.4
Q ss_pred ccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHH-HHHHHHhhc--C
Q 029875 5 VWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVC--E 81 (186)
Q Consensus 5 ~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~-~~~~~~~~~--~ 81 (186)
..+.||+|.++....+.+++..+.+.||||||+++|..++..+++++|++|+|||++++.+|+.+.. |...+.... .
T Consensus 40 ~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~ 119 (211)
T PLN03118 40 EDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQ 119 (211)
T ss_pred CCcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 3678999999998888889989999999999999999999999999999999999999999999875 666665443 4
Q ss_pred CCCEEEEEeCCCCCC-cccCh-HHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCCCC
Q 029875 82 NIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPN 141 (186)
Q Consensus 82 ~~p~ilv~nK~Dl~~-~~~~~-~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~ 141 (186)
+.|+++|+||+|+.. +.+.. +...++..++++|+++||++|.|++++|.+|++.+...+.
T Consensus 120 ~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~~~~~~~~~ 181 (211)
T PLN03118 120 DCVKMLVGNKVDRESERDVSREEGMALAKEHGCLFLECSAKTRENVEQCFEELALKIMEVPS 181 (211)
T ss_pred CCCEEEEEECccccccCccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhhhh
Confidence 679999999999974 33333 3446777888999999999999999999999999977653
No 90
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.91 E-value=1.1e-23 Score=154.46 Aligned_cols=133 Identities=20% Similarity=0.287 Sum_probs=107.9
Q ss_pred cccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhh--cCCC
Q 029875 6 WGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENI 83 (186)
Q Consensus 6 ~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~--~~~~ 83 (186)
.|.||+|.++... +...+.+++|||||+.++..++..+++++|++++|||++++.+|.++..|+..+... ..+.
T Consensus 26 ~~~~T~~~~~~~~----~~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~ 101 (169)
T cd04158 26 QPIPTIGFNVETV----EYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDA 101 (169)
T ss_pred CcCCcCceeEEEE----EECCEEEEEEECCCChhcchHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCC
Confidence 5889999888633 235689999999999999999999999999999999999999999999998888754 2468
Q ss_pred CEEEEEeCCCCCCcccChHHHHHHHHcC------CcEEEeccCCCCCchHHHHHHHHHHhCCCCc
Q 029875 84 PIVLCGNKVDVKNRQVKAKQVTFHRKKN------LQYYEISAKSNYNFEKPFLYLARKLAGDPNL 142 (186)
Q Consensus 84 p~ilv~nK~Dl~~~~~~~~~~~~~~~~~------~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~~ 142 (186)
|++||+||+|+.+.....+..+++...+ +.+++|||++|.||+++|++|++.+.+...+
T Consensus 102 piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f~~l~~~~~~~~~~ 166 (169)
T cd04158 102 LLLIFANKQDVAGALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDWLSRQLVAAGVL 166 (169)
T ss_pred CEEEEEeCcCcccCCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHHHHHHHHHhhcccc
Confidence 9999999999975433333444443222 2578999999999999999999988877654
No 91
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.91 E-value=7.5e-24 Score=157.19 Aligned_cols=129 Identities=20% Similarity=0.230 Sum_probs=101.1
Q ss_pred cccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhh--cCCC
Q 029875 6 WGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENI 83 (186)
Q Consensus 6 ~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~--~~~~ 83 (186)
.+.||+|.++.. + +...+.+++|||||++++..+|..++++||++|+|||+++++++..+..|+..+... .++.
T Consensus 44 ~~~pt~g~~~~~--~--~~~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~ 119 (181)
T PLN00223 44 TTIPTIGFNVET--V--EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDA 119 (181)
T ss_pred cccCCcceeEEE--E--EECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCC
Confidence 478999988753 2 335689999999999999999999999999999999999999999888777776542 2579
Q ss_pred CEEEEEeCCCCCCcccChHHHHHHHHcC-----CcEEEeccCCCCCchHHHHHHHHHHhC
Q 029875 84 PIVLCGNKVDVKNRQVKAKQVTFHRKKN-----LQYYEISAKSNYNFEKPFLYLARKLAG 138 (186)
Q Consensus 84 p~ilv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 138 (186)
|++|++||+|+++.....+......-.. +.++++||++|.||.++|++|++.+..
T Consensus 120 piilv~NK~Dl~~~~~~~~~~~~l~l~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~~~~ 179 (181)
T PLN00223 120 VLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAN 179 (181)
T ss_pred CEEEEEECCCCCCCCCHHHHHHHhCccccCCCceEEEeccCCCCCCHHHHHHHHHHHHhh
Confidence 9999999999976532222222211111 235689999999999999999988754
No 92
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.91 E-value=5.4e-23 Score=150.37 Aligned_cols=137 Identities=31% Similarity=0.567 Sum_probs=118.8
Q ss_pred CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcC-
Q 029875 3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE- 81 (186)
Q Consensus 3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~- 81 (186)
+...+.+|+|.++..+.+.+.+..+.+++||+||++.|..++..++++++++|+|||++++.+|+.+..|...+.....
T Consensus 25 ~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~ 104 (172)
T cd01862 25 FSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASP 104 (172)
T ss_pred CCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCc
Confidence 4567789999999999999999999999999999999999999999999999999999999999999899888766543
Q ss_pred ----CCCEEEEEeCCCCCC-cccChH-HHHHHHHcC-CcEEEeccCCCCCchHHHHHHHHHHhCC
Q 029875 82 ----NIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKN-LQYYEISAKSNYNFEKPFLYLARKLAGD 139 (186)
Q Consensus 82 ----~~p~ilv~nK~Dl~~-~~~~~~-~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 139 (186)
+.|+++|+||+|+.. .....+ ...+++..+ .+++++||++|.|++++|.++.+.+.+.
T Consensus 105 ~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~~~~~ 169 (172)
T cd01862 105 SDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGNIPYFETSAKEAINVEQAFETIARKALEQ 169 (172)
T ss_pred cCCCCceEEEEEECcccccccccCHHHHHHHHHHcCCceEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 799999999999973 333333 446777776 7899999999999999999999988765
No 93
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.91 E-value=5.7e-24 Score=155.96 Aligned_cols=125 Identities=18% Similarity=0.239 Sum_probs=100.0
Q ss_pred cccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhh--cCCC
Q 029875 6 WGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENI 83 (186)
Q Consensus 6 ~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~--~~~~ 83 (186)
.+.||+|.++.... ...+.+++|||+|+++|..++..++++|+++|+|||++++.+|.++..|+..+... ..+.
T Consensus 36 ~~~~t~g~~~~~~~----~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~ 111 (168)
T cd04149 36 TTIPTVGFNVETVT----YKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDA 111 (168)
T ss_pred cccCCcccceEEEE----ECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCC
Confidence 47899998875332 35689999999999999999999999999999999999999999988887777543 3578
Q ss_pred CEEEEEeCCCCCCcccChHHHHHHH-----HcCCcEEEeccCCCCCchHHHHHHHH
Q 029875 84 PIVLCGNKVDVKNRQVKAKQVTFHR-----KKNLQYYEISAKSNYNFEKPFLYLAR 134 (186)
Q Consensus 84 p~ilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~l~~~l~~ 134 (186)
|++||+||+|+.+.....+...++. ...++++++||++|.|++++|.+|.+
T Consensus 112 piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~~~~~~l~~ 167 (168)
T cd04149 112 LLLVFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLSS 167 (168)
T ss_pred cEEEEEECcCCccCCCHHHHHHHcCCCccCCCcEEEEEeeCCCCCChHHHHHHHhc
Confidence 9999999999975432233333321 12246899999999999999999874
No 94
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.90 E-value=9.5e-23 Score=149.15 Aligned_cols=134 Identities=26% Similarity=0.424 Sum_probs=114.5
Q ss_pred CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc--
Q 029875 3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-- 80 (186)
Q Consensus 3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-- 80 (186)
+...|.||++..+ .+.+.+++..+.+++|||+|+++|..+++.++++++++++|||++++.+++.+..|...+.+..
T Consensus 26 ~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~ 104 (168)
T cd04177 26 FIESYDPTIEDSY-RKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDS 104 (168)
T ss_pred CCcccCCcchheE-EEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC
Confidence 3456889998655 5777888999999999999999999999999999999999999999999999999999887643
Q ss_pred CCCCEEEEEeCCCCCC-cccCh-HHHHHHHHcC-CcEEEeccCCCCCchHHHHHHHHHHh
Q 029875 81 ENIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKN-LQYYEISAKSNYNFEKPFLYLARKLA 137 (186)
Q Consensus 81 ~~~p~ilv~nK~Dl~~-~~~~~-~~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~i~ 137 (186)
.+.|+++++||+|+.+ +.... +...+++.++ ++++++||++|.|+.++|.++++++.
T Consensus 105 ~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~~~f~~i~~~~~ 164 (168)
T cd04177 105 DNVPMVLVGNKADLEDDRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDLVRQII 164 (168)
T ss_pred CCCCEEEEEEChhccccCccCHHHHHHHHHHcCCceEEEeeCCCCCCHHHHHHHHHHHHh
Confidence 5799999999999974 33333 3446677777 78999999999999999999998764
No 95
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.90 E-value=1.3e-22 Score=149.11 Aligned_cols=133 Identities=27% Similarity=0.445 Sum_probs=111.2
Q ss_pred CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHH-HHHHHHHhhcC
Q 029875 3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCE 81 (186)
Q Consensus 3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~-~~~~~~~~~~~ 81 (186)
+...|.||++..+. ..+.+++..+.+.||||+|++.|..++..+++++|++++|||++++.+|+.+. .|+..+.+..+
T Consensus 26 ~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~ 104 (175)
T cd01870 26 FPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP 104 (175)
T ss_pred CCCCCCCccccceE-EEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC
Confidence 45578999987765 46678889999999999999999999999999999999999999999999885 69888887767
Q ss_pred CCCEEEEEeCCCCCCcc-------------cC-hHHHHHHHHcC-CcEEEeccCCCCCchHHHHHHHHHH
Q 029875 82 NIPIVLCGNKVDVKNRQ-------------VK-AKQVTFHRKKN-LQYYEISAKSNYNFEKPFLYLARKL 136 (186)
Q Consensus 82 ~~p~ilv~nK~Dl~~~~-------------~~-~~~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~i 136 (186)
+.|+++|+||+|+.+.. +. .+..++++..+ .++++|||++|.|++++|.++++.+
T Consensus 105 ~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~~ 174 (175)
T cd01870 105 NVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAKTKEGVREVFEMATRAA 174 (175)
T ss_pred CCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEeccccCcCHHHHHHHHHHHh
Confidence 89999999999986421 11 22345666665 4799999999999999999998764
No 96
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.90 E-value=7.3e-23 Score=149.18 Aligned_cols=133 Identities=18% Similarity=0.290 Sum_probs=111.2
Q ss_pred CccccccceEEEEEEEEEECCeEEEEEEEeCCCcccc-CCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc--
Q 029875 4 SVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF-GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-- 80 (186)
Q Consensus 4 ~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~-~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-- 80 (186)
...|.||++..+ ...+.+++..+.+++|||+|++.+ ......+++++|++|+|||++++.||+.+..|+..+....
T Consensus 25 ~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~ 103 (165)
T cd04146 25 IGEYDPNLESLY-SRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKR 103 (165)
T ss_pred ccccCCChHHhc-eEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcC
Confidence 456888887555 456778999999999999999863 4567788999999999999999999999999998887754
Q ss_pred -CCCCEEEEEeCCCCCC-cccChH-HHHHHHHcCCcEEEeccCCCC-CchHHHHHHHHHHh
Q 029875 81 -ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNY-NFEKPFLYLARKLA 137 (186)
Q Consensus 81 -~~~p~ilv~nK~Dl~~-~~~~~~-~~~~~~~~~~~~~~~Sa~~~~-gi~~l~~~l~~~i~ 137 (186)
.+.|+++|+||+|+.+ +.+..+ ..++++..+.+|+++||++|. ||+++|..+++.+.
T Consensus 104 ~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~~v~~~f~~l~~~~~ 164 (165)
T cd04146 104 DREIPVILVGNKADLLHYRQVSTEEGEKLASELGCLFFEVSAAEDYDGVHSVFHELCREVR 164 (165)
T ss_pred CCCCCEEEEEECCchHHhCccCHHHHHHHHHHcCCEEEEeCCCCCchhHHHHHHHHHHHHh
Confidence 4799999999999864 344433 457888888999999999995 99999999998764
No 97
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.90 E-value=3e-23 Score=153.08 Aligned_cols=127 Identities=23% Similarity=0.303 Sum_probs=101.0
Q ss_pred cccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhh--cCCC
Q 029875 6 WGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENI 83 (186)
Q Consensus 6 ~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~--~~~~ 83 (186)
.+.||+|.++..... ..+.+++|||||++++..++..++++|+++|+|||++++.+++.+..|+..+... ..+.
T Consensus 40 ~~~~t~~~~~~~~~~----~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~ 115 (175)
T smart00177 40 TTIPTIGFNVETVTY----KNISFTVWDVGGQDKIRPLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDA 115 (175)
T ss_pred CcCCccccceEEEEE----CCEEEEEEECCCChhhHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCC
Confidence 578999998864432 5689999999999999999999999999999999999999999988888877543 2578
Q ss_pred CEEEEEeCCCCCCcccChHHHHHH-----HHcCCcEEEeccCCCCCchHHHHHHHHHH
Q 029875 84 PIVLCGNKVDVKNRQVKAKQVTFH-----RKKNLQYYEISAKSNYNFEKPFLYLARKL 136 (186)
Q Consensus 84 p~ilv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 136 (186)
|++||+||+|+.+.....+..... +...+.++++||++|.|++++|++|...+
T Consensus 116 piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~~ 173 (175)
T smart00177 116 VILVFANKQDLPDAMKAAEITEKLGLHSIRDRNWYIQPTCATSGDGLYEGLTWLSNNL 173 (175)
T ss_pred cEEEEEeCcCcccCCCHHHHHHHhCccccCCCcEEEEEeeCCCCCCHHHHHHHHHHHh
Confidence 999999999997543222222211 11123577899999999999999998775
No 98
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.90 E-value=2.1e-23 Score=151.56 Aligned_cols=125 Identities=22% Similarity=0.293 Sum_probs=98.1
Q ss_pred cccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhh--cCCC
Q 029875 6 WGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENI 83 (186)
Q Consensus 6 ~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~--~~~~ 83 (186)
.|.||+|.++.... ...+.+++|||+|++++..++..++++||++|+|||++++.+|..+..|+..+... ..+.
T Consensus 27 ~~~pt~g~~~~~~~----~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~ 102 (159)
T cd04150 27 TTIPTIGFNVETVE----YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDA 102 (159)
T ss_pred ccCCCCCcceEEEE----ECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCC
Confidence 47899998875332 25689999999999999999999999999999999999999999988877776543 2468
Q ss_pred CEEEEEeCCCCCCcccChHHH-HHH----HHcCCcEEEeccCCCCCchHHHHHHHH
Q 029875 84 PIVLCGNKVDVKNRQVKAKQV-TFH----RKKNLQYYEISAKSNYNFEKPFLYLAR 134 (186)
Q Consensus 84 p~ilv~nK~Dl~~~~~~~~~~-~~~----~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 134 (186)
|++|++||+|+.+.....+.. .+. ...++.++++||++|.||+++|++|..
T Consensus 103 piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~~~l~~ 158 (159)
T cd04150 103 VLLVFANKQDLPNAMSAAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSN 158 (159)
T ss_pred CEEEEEECCCCCCCCCHHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHHHHHhc
Confidence 999999999997543222222 221 112345789999999999999999864
No 99
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.90 E-value=3.4e-22 Score=152.75 Aligned_cols=136 Identities=19% Similarity=0.193 Sum_probs=114.9
Q ss_pred ccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccc-cCcEEEEEEeCCChhhHHhHHHHHHHHHhhc--C
Q 029875 5 VWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYI-HGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--E 81 (186)
Q Consensus 5 ~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~-~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~--~ 81 (186)
..|.||++.++..+++.+++..+.+++|||+|++. .+...+++ ++|++++|||++++.||+.+..|+..+.+.. .
T Consensus 28 ~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~--~~~~~~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~ 105 (221)
T cd04148 28 HAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEM--WTEDSCMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQLE 105 (221)
T ss_pred cCcCCCccccceEEEEEECCEEEEEEEEeCCCcch--HHHhHHhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC
Confidence 57889998888888999999999999999999982 33455667 9999999999999999999999999887764 5
Q ss_pred CCCEEEEEeCCCCCC-cccChH-HHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCCCCc
Q 029875 82 NIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNL 142 (186)
Q Consensus 82 ~~p~ilv~nK~Dl~~-~~~~~~-~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~~ 142 (186)
+.|+++|+||+|+.+ +.+..+ ...++..++++++++||++|.||+++|+++++.+......
T Consensus 106 ~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~SA~~~~gv~~l~~~l~~~~~~~~~~ 168 (221)
T cd04148 106 DRPIILVGNKSDLARSREVSVQEGRACAVVFDCKFIETSAGLQHNVDELLEGIVRQIRLRRDS 168 (221)
T ss_pred CCCEEEEEEChhccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHhhhcc
Confidence 799999999999964 444433 4577777889999999999999999999999999754433
No 100
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.90 E-value=2e-23 Score=152.51 Aligned_cols=128 Identities=13% Similarity=0.051 Sum_probs=105.1
Q ss_pred CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCC
Q 029875 3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCEN 82 (186)
Q Consensus 3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~ 82 (186)
+...|.||+|.++. .+++..+.+.+|||+|+++|..++..++++||++|+|||++++.+|..++.|+..+....++
T Consensus 24 ~~~~~~pt~g~~~~----~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t~~~s~~~~~~~l~~~~~~~~~ 99 (164)
T cd04162 24 SLESVVPTTGFNSV----AIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDSADSERLPLARQELHQLLQHPPD 99 (164)
T ss_pred CcccccccCCcceE----EEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHhCCCC
Confidence 45678999997643 34567799999999999999999999999999999999999999999999998888765578
Q ss_pred CCEEEEEeCCCCCCcccChH------HHHHHHHcCCcEEEeccCC------CCCchHHHHHHHH
Q 029875 83 IPIVLCGNKVDVKNRQVKAK------QVTFHRKKNLQYYEISAKS------NYNFEKPFLYLAR 134 (186)
Q Consensus 83 ~p~ilv~nK~Dl~~~~~~~~------~~~~~~~~~~~~~~~Sa~~------~~gi~~l~~~l~~ 134 (186)
.|+++|+||+|+.......+ ...++++.++.++++||++ ++||+++|..++.
T Consensus 100 ~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v~~~~~~~~~ 163 (164)
T cd04162 100 LPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAVKDLLSQLIN 163 (164)
T ss_pred CcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceEEEEeeecCCCChhHHHHHHHHHHHHhc
Confidence 99999999999975332221 2345555677889888888 9999999998863
No 101
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.89 E-value=4.9e-22 Score=145.08 Aligned_cols=133 Identities=33% Similarity=0.571 Sum_probs=115.3
Q ss_pred CccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc-CC
Q 029875 4 SVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-EN 82 (186)
Q Consensus 4 ~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-~~ 82 (186)
...+.||+|.++....+.+++..+.+.+||++|++.|...+..+++.++++++|||+++..+|+.+..|+..+.... .+
T Consensus 33 ~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~ 112 (169)
T cd04114 33 PPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNK 112 (169)
T ss_pred CCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCC
Confidence 34678999999998899999999999999999999999999999999999999999999999999999999887765 36
Q ss_pred CCEEEEEeCCCCCC-cccChH-HHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHH
Q 029875 83 IPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 136 (186)
Q Consensus 83 ~p~ilv~nK~Dl~~-~~~~~~-~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 136 (186)
.|+++|+||+|+.+ +.+... ...+.+....+++++||++|.|+.++|+++++.+
T Consensus 113 ~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~~ 168 (169)
T cd04114 113 VITILVGNKIDLAERREVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFLDLACRL 168 (169)
T ss_pred CeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHHHHHHh
Confidence 99999999999974 444444 3355566668899999999999999999999865
No 102
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.89 E-value=5.4e-22 Score=143.38 Aligned_cols=134 Identities=28% Similarity=0.483 Sum_probs=116.8
Q ss_pred CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcC-
Q 029875 3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE- 81 (186)
Q Consensus 3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~- 81 (186)
+...+.+|++.++....+.+.+..+.+.+|||+|++.+..++..++++++++++|||++++.+++.+..|++.+.....
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~ 104 (162)
T cd04123 25 FNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGN 104 (162)
T ss_pred CCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCC
Confidence 3456778998899888888888889999999999999999999999999999999999999999999999999888764
Q ss_pred CCCEEEEEeCCCCCC-cccChH-HHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHH
Q 029875 82 NIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 136 (186)
Q Consensus 82 ~~p~ilv~nK~Dl~~-~~~~~~-~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 136 (186)
+.|+++++||+|+.. ++...+ ..++++..+.+++++||++|.|++++|+++.+.+
T Consensus 105 ~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gi~~~~~~l~~~~ 161 (162)
T cd04123 105 NISLVIVGNKIDLERQRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLAKRM 161 (162)
T ss_pred CCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 689999999999974 333333 4466777889999999999999999999998875
No 103
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.89 E-value=1.1e-21 Score=146.18 Aligned_cols=137 Identities=24% Similarity=0.329 Sum_probs=114.7
Q ss_pred CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHH-HHHHHHHhhcC
Q 029875 3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCE 81 (186)
Q Consensus 3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~-~~~~~~~~~~~ 81 (186)
+...+.||++..+. ..+.+++..+.+.+|||+|++.|..++..++++++++++|||+++..+|+.+. .|+..+.+..+
T Consensus 26 ~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~ 104 (187)
T cd04129 26 FPEEYHPTVFENYV-TDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYCP 104 (187)
T ss_pred CCcccCCcccceEE-EEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC
Confidence 34567889876665 46677888899999999999999888888899999999999999999999986 69999988777
Q ss_pred CCCEEEEEeCCCCCCc-----------ccC-hHHHHHHHHcCC-cEEEeccCCCCCchHHHHHHHHHHhCCC
Q 029875 82 NIPIVLCGNKVDVKNR-----------QVK-AKQVTFHRKKNL-QYYEISAKSNYNFEKPFLYLARKLAGDP 140 (186)
Q Consensus 82 ~~p~ilv~nK~Dl~~~-----------~~~-~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~i~~~~ 140 (186)
+.|+++|+||+|+.+. .+. .+...+++..+. +|++|||++|.||+++|.++++.+....
T Consensus 105 ~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~~~ 176 (187)
T cd04129 105 NVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTGEGVDDVFEAATRAALLVR 176 (187)
T ss_pred CCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCCCCHHHHHHHHHHHHhccc
Confidence 8999999999998542 111 234577788875 8999999999999999999998886553
No 104
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.88 E-value=2.8e-22 Score=148.90 Aligned_cols=134 Identities=17% Similarity=0.202 Sum_probs=107.6
Q ss_pred cccccceEEEEEEEEEE-CCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc--CC
Q 029875 6 WGKATIGVEVHPLDFFT-NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--EN 82 (186)
Q Consensus 6 ~~~~Tig~~~~~~~~~~-~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~--~~ 82 (186)
.+.||+|.++....+.+ ++..+.+.+|||+|++++..++..++++|+++|+|||+++..+++.+..|+..+.... .+
T Consensus 30 ~~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~ 109 (183)
T cd04152 30 NTVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQG 109 (183)
T ss_pred CcCCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCC
Confidence 35799998888777765 4567999999999999999999999999999999999999999998888888877643 47
Q ss_pred CCEEEEEeCCCCCCcccChHHHHHHH--H----cCCcEEEeccCCCCCchHHHHHHHHHHhCC
Q 029875 83 IPIVLCGNKVDVKNRQVKAKQVTFHR--K----KNLQYYEISAKSNYNFEKPFLYLARKLAGD 139 (186)
Q Consensus 83 ~p~ilv~nK~Dl~~~~~~~~~~~~~~--~----~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 139 (186)
.|+++|+||+|+.+.....+...+.. . .+++++++||++|.|++++|++|++.+.+.
T Consensus 110 ~p~iiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~l~~~l~~~ 172 (183)
T cd04152 110 VPVLVLANKQDLPNALSVSEVEKLLALHELSASTPWHVQPACAIIGEGLQEGLEKLYEMILKR 172 (183)
T ss_pred CcEEEEEECcCccccCCHHHHHHHhCccccCCCCceEEEEeecccCCCHHHHHHHHHHHHHHH
Confidence 99999999999865322222222221 1 124688999999999999999999888643
No 105
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.88 E-value=2.6e-22 Score=148.99 Aligned_cols=130 Identities=18% Similarity=0.270 Sum_probs=100.9
Q ss_pred cccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhh--cCCC
Q 029875 6 WGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENI 83 (186)
Q Consensus 6 ~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~--~~~~ 83 (186)
.+.||+|.++.... ...+.+++|||+|++++..++..+++++|++|+|||++++.+|.....|+..+... ..+.
T Consensus 44 ~~~~T~~~~~~~~~----~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~ 119 (182)
T PTZ00133 44 TTIPTIGFNVETVE----YKNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDA 119 (182)
T ss_pred ccCCccccceEEEE----ECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCC
Confidence 47899998875432 35689999999999999999999999999999999999999999888777766443 2568
Q ss_pred CEEEEEeCCCCCCcccChHHHHHH-----HHcCCcEEEeccCCCCCchHHHHHHHHHHhCC
Q 029875 84 PIVLCGNKVDVKNRQVKAKQVTFH-----RKKNLQYYEISAKSNYNFEKPFLYLARKLAGD 139 (186)
Q Consensus 84 p~ilv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 139 (186)
|++||+||+|+.+.....+..... ....+.++++||++|.|++++|++|.+.+..+
T Consensus 120 piilv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~gv~e~~~~l~~~i~~~ 180 (182)
T PTZ00133 120 VLLVFANKQDLPNAMSTTEVTEKLGLHSVRQRNWYIQGCCATTAQGLYEGLDWLSANIKKS 180 (182)
T ss_pred CEEEEEeCCCCCCCCCHHHHHHHhCCCcccCCcEEEEeeeCCCCCCHHHHHHHHHHHHHHh
Confidence 999999999996532222221111 11123567999999999999999999887643
No 106
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.88 E-value=1.4e-21 Score=141.62 Aligned_cols=135 Identities=27% Similarity=0.450 Sum_probs=115.1
Q ss_pred CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc--
Q 029875 3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-- 80 (186)
Q Consensus 3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-- 80 (186)
+...+.||++..+ .+...+++..+.+.+|||+|+..+..++..++++++++++|||++++.+|+.+..|...+....
T Consensus 25 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~ 103 (164)
T cd04139 25 FVEDYEPTKADSY-RKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVFSITDMESFTATAEFREQILRVKDD 103 (164)
T ss_pred CccccCCcchhhE-EEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC
Confidence 3457888987555 4667789999999999999999999999999999999999999999999999999999888763
Q ss_pred CCCCEEEEEeCCCCCC-cccCh-HHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhC
Q 029875 81 ENIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG 138 (186)
Q Consensus 81 ~~~p~ilv~nK~Dl~~-~~~~~-~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 138 (186)
.+.|+++|+||+|+.+ ..... ....++..++++++++||++|.|++++|+.+++.+.+
T Consensus 104 ~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 163 (164)
T cd04139 104 DNVPLLLVGNKCDLEDKRQVSSEEAANLARQWGVPYVETSAKTRQNVEKAFYDLVREIRQ 163 (164)
T ss_pred CCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEeeCCCCCCHHHHHHHHHHHHHh
Confidence 5799999999999975 33332 3446777788999999999999999999999987753
No 107
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.88 E-value=1.1e-21 Score=140.75 Aligned_cols=131 Identities=36% Similarity=0.634 Sum_probs=116.0
Q ss_pred CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc-C
Q 029875 3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-E 81 (186)
Q Consensus 3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-~ 81 (186)
+...+.||+|.++....+.+++..+.+.+||+||+..+...+..+++++|++|+|+|++++.++..+..|+..+.... .
T Consensus 25 ~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~ 104 (159)
T cd00154 25 FDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVYDITNRESFENLDKWLKELKEYAPE 104 (159)
T ss_pred CCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCC
Confidence 445578999999999999999999999999999999999999999999999999999999999999999999998876 6
Q ss_pred CCCEEEEEeCCCCC-CcccC-hHHHHHHHHcCCcEEEeccCCCCCchHHHHHHH
Q 029875 82 NIPIVLCGNKVDVK-NRQVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 133 (186)
Q Consensus 82 ~~p~ilv~nK~Dl~-~~~~~-~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 133 (186)
..|+++++||+|+. ..... .+...++...+.+++++||++|.|++++|.++.
T Consensus 105 ~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~ 158 (159)
T cd00154 105 NIPIILVGNKIDLEDQRQVSTEEAQQFAKENGLLFFETSAKTGENVEELFQSLA 158 (159)
T ss_pred CCcEEEEEEcccccccccccHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHh
Confidence 79999999999996 33333 335577777889999999999999999999886
No 108
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.88 E-value=3.2e-22 Score=147.04 Aligned_cols=125 Identities=14% Similarity=0.210 Sum_probs=100.0
Q ss_pred cccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhh--cCCC
Q 029875 6 WGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENI 83 (186)
Q Consensus 6 ~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~--~~~~ 83 (186)
.+.||+|..+.. +.++ .+.+++|||||++.++.++..++++++++++|||++++.+|..+..|+..+... ..+.
T Consensus 41 ~~~~t~g~~~~~--~~~~--~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~ 116 (173)
T cd04154 41 TISPTLGFQIKT--LEYE--GYKLNIWDVGGQKTLRPYWRNYFESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGA 116 (173)
T ss_pred CcCCccccceEE--EEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCC
Confidence 578999966544 3334 578999999999999999999999999999999999999999988888877543 2689
Q ss_pred CEEEEEeCCCCCCcccChHHHHHHH-----HcCCcEEEeccCCCCCchHHHHHHHH
Q 029875 84 PIVLCGNKVDVKNRQVKAKQVTFHR-----KKNLQYYEISAKSNYNFEKPFLYLAR 134 (186)
Q Consensus 84 p~ilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~l~~~l~~ 134 (186)
|+++|+||+|+.+.....+...++. ..+++++++||++|.|++++|.+++.
T Consensus 117 p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~ 172 (173)
T cd04154 117 TLLILANKQDLPGALSEEEIREALELDKISSHHWRIQPCSAVTGEGLLQGIDWLVD 172 (173)
T ss_pred CEEEEEECcccccCCCHHHHHHHhCccccCCCceEEEeccCCCCcCHHHHHHHHhc
Confidence 9999999999975432233333332 23568999999999999999999864
No 109
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.88 E-value=2.1e-21 Score=145.93 Aligned_cols=135 Identities=24% Similarity=0.286 Sum_probs=111.7
Q ss_pred CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc--
Q 029875 3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-- 80 (186)
Q Consensus 3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-- 80 (186)
+...|.||++ ++....+.+++..+.++||||+|+..|..++..++++||++|+|||++++.+|+.+..|+..+....
T Consensus 24 ~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~ 102 (198)
T cd04147 24 FEPKYRRTVE-EMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYAVDDPESFEEVERLREEILEVKED 102 (198)
T ss_pred CCccCCCchh-hheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC
Confidence 3456788886 5666778888888999999999999999999999999999999999999999999999998888765
Q ss_pred CCCCEEEEEeCCCCCC--cccChH-HHHHH-HHcCCcEEEeccCCCCCchHHHHHHHHHHhC
Q 029875 81 ENIPIVLCGNKVDVKN--RQVKAK-QVTFH-RKKNLQYYEISAKSNYNFEKPFLYLARKLAG 138 (186)
Q Consensus 81 ~~~p~ilv~nK~Dl~~--~~~~~~-~~~~~-~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 138 (186)
.+.|+++|+||+|+.. +.+... ..+.. ...+.+++++||++|.|++++|+++++.+..
T Consensus 103 ~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~ 164 (198)
T cd04147 103 KFVPIVVVGNKADSLEEERQVPAKDALSTVELDWNCGFVETSAKDNENVLEVFKELLRQANL 164 (198)
T ss_pred CCCcEEEEEEccccccccccccHHHHHHHHHhhcCCcEEEecCCCCCCHHHHHHHHHHHhhc
Confidence 4799999999999964 223222 22222 2445789999999999999999999998764
No 110
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.88 E-value=1.4e-24 Score=155.71 Aligned_cols=137 Identities=29% Similarity=0.486 Sum_probs=126.3
Q ss_pred CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCC
Q 029875 3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCEN 82 (186)
Q Consensus 3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~ 82 (186)
+.++|.-|||++|....+.+++..+++++|||+||+.|..+.+.||++|.+++|||..+|+.||+.+..|.+.+...+..
T Consensus 45 fTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa~vLVFSTTDr~SFea~~~w~~kv~~e~~~ 124 (246)
T KOG4252|consen 45 FTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQASVLVFSTTDRYSFEATLEWYNKVQKETER 124 (246)
T ss_pred cccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccceEEEEecccHHHHHHHHHHHHHHHHHhcc
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEEeCCCCCCc-ccChH-HHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCC
Q 029875 83 IPIVLCGNKVDVKNR-QVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD 139 (186)
Q Consensus 83 ~p~ilv~nK~Dl~~~-~~~~~-~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 139 (186)
+|.++|-||+|+.+. +.... ...+++.++..++.+|++...|+..+|..|+..+.+.
T Consensus 125 IPtV~vqNKIDlveds~~~~~evE~lak~l~~RlyRtSvked~NV~~vF~YLaeK~~q~ 183 (246)
T KOG4252|consen 125 IPTVFVQNKIDLVEDSQMDKGEVEGLAKKLHKRLYRTSVKEDFNVMHVFAYLAEKLTQQ 183 (246)
T ss_pred CCeEEeeccchhhHhhhcchHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHH
Confidence 999999999999864 44333 4578889999999999999999999999999888654
No 111
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.88 E-value=3.4e-22 Score=144.80 Aligned_cols=127 Identities=24% Similarity=0.344 Sum_probs=99.1
Q ss_pred CccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc---
Q 029875 4 SVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--- 80 (186)
Q Consensus 4 ~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~--- 80 (186)
...|.||+|..+... ....+.+++|||||++++..++..++++++++|+|+|++++.++..+..|+..+.+..
T Consensus 26 ~~~~~~t~g~~~~~~----~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~ 101 (162)
T cd04157 26 SQIIVPTVGFNVESF----EKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIK 101 (162)
T ss_pred cceecCccccceEEE----EECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccc
Confidence 346889999765432 2356889999999999999999999999999999999999999988888888776532
Q ss_pred -CCCCEEEEEeCCCCCCcccChHHHHHH---H--HcCCcEEEeccCCCCCchHHHHHHHH
Q 029875 81 -ENIPIVLCGNKVDVKNRQVKAKQVTFH---R--KKNLQYYEISAKSNYNFEKPFLYLAR 134 (186)
Q Consensus 81 -~~~p~ilv~nK~Dl~~~~~~~~~~~~~---~--~~~~~~~~~Sa~~~~gi~~l~~~l~~ 134 (186)
.+.|+++|+||+|+.+.....+..... . ...++++++||++|.|++++|++|..
T Consensus 102 ~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~~~~~l~~ 161 (162)
T cd04157 102 HRRVPILFFANKMDLPDALTAVKITQLLGLENIKDKPWHIFASNALTGEGLDEGVQWLQA 161 (162)
T ss_pred cCCCCEEEEEeCccccCCCCHHHHHHHhCCccccCceEEEEEeeCCCCCchHHHHHHHhc
Confidence 479999999999997543222221111 1 11245899999999999999999864
No 112
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.87 E-value=1.6e-21 Score=146.93 Aligned_cols=121 Identities=18% Similarity=0.259 Sum_probs=101.0
Q ss_pred CCccccccceEEEEEEEEEEC-----CeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHH
Q 029875 3 VSVWGKATIGVEVHPLDFFTN-----CGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLC 77 (186)
Q Consensus 3 ~~~~~~~Tig~~~~~~~~~~~-----~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~ 77 (186)
+...|.||+|.++..+.+.++ +..+.++||||+|+++|..++..++++++++|+|||++++.||+++..|+..+.
T Consensus 25 f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~ 104 (202)
T cd04102 25 VLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNGIILVHDLTNRKSSQNLQRWSLEAL 104 (202)
T ss_pred CCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCEEEEEEECcChHHHHHHHHHHHHHH
Confidence 456789999999988877764 578999999999999999999999999999999999999999999999999997
Q ss_pred hhc--------------------CCCCEEEEEeCCCCCCc-ccChH-----HHHHHHHcCCcEEEeccCCCC
Q 029875 78 RVC--------------------ENIPIVLCGNKVDVKNR-QVKAK-----QVTFHRKKNLQYYEISAKSNY 123 (186)
Q Consensus 78 ~~~--------------------~~~p~ilv~nK~Dl~~~-~~~~~-----~~~~~~~~~~~~~~~Sa~~~~ 123 (186)
+.. .+.|++|||||+|+.+. .+..+ ...++...+.+.++.++.++.
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~~~~~~~~~~~~ia~~~~~~~i~~~c~~~~ 176 (202)
T cd04102 105 NKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESSGNLVLTARGFVAEQGNAEEINLNCTNGR 176 (202)
T ss_pred HhhccccccccccccccccccCCCCceEEEEEECccchhhcccchHHHhhHhhhHHHhcCCceEEEecCCcc
Confidence 631 36899999999999643 33322 235677789999888887654
No 113
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.86 E-value=1.3e-20 Score=137.55 Aligned_cols=130 Identities=24% Similarity=0.394 Sum_probs=108.4
Q ss_pred CccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhH-HHHHHHHHhhcCC
Q 029875 4 SVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCEN 82 (186)
Q Consensus 4 ~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i-~~~~~~~~~~~~~ 82 (186)
...|.||+... ....+.+++..+.+++|||||++.+..++..+++.+|++++|||++++.+|... ..|+..+.....+
T Consensus 26 ~~~~~~~~~~~-~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~ 104 (171)
T cd00157 26 PTEYVPTVFDN-YSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCPN 104 (171)
T ss_pred CCCCCCceeee-eEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCC
Confidence 35678888644 445667789999999999999999999999999999999999999999999876 4688888887778
Q ss_pred CCEEEEEeCCCCCCccc-------------ChHHHHHHHHcCC-cEEEeccCCCCCchHHHHHHHH
Q 029875 83 IPIVLCGNKVDVKNRQV-------------KAKQVTFHRKKNL-QYYEISAKSNYNFEKPFLYLAR 134 (186)
Q Consensus 83 ~p~ilv~nK~Dl~~~~~-------------~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~ 134 (186)
.|+++|+||+|+..... ......++..++. +++++||++|.|++++|.++++
T Consensus 105 ~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~ 170 (171)
T cd00157 105 VPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQEGVKEVFEEAIR 170 (171)
T ss_pred CCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCCCCHHHHHHHHhh
Confidence 99999999999975331 1224466677776 8999999999999999999875
No 114
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.86 E-value=1.6e-21 Score=142.12 Aligned_cols=126 Identities=21% Similarity=0.355 Sum_probs=101.9
Q ss_pred ccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc--CC
Q 029875 5 VWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--EN 82 (186)
Q Consensus 5 ~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~--~~ 82 (186)
..+.||++.++....+ ..+.+++|||||++.+..++..++++++++++|+|+++..++.....|+..+.+.. .+
T Consensus 32 ~~~~~t~~~~~~~~~~----~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (167)
T cd04160 32 SKITPTVGLNIGTIEV----GNARLKFWDLGGQESLRSLWDKYYAECHAIIYVIDSTDRERFEESKSALEKVLRNEALEG 107 (167)
T ss_pred cccCCccccceEEEEE----CCEEEEEEECCCChhhHHHHHHHhCCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcC
Confidence 4678999998865444 36789999999999999999999999999999999999989988888888876642 57
Q ss_pred CCEEEEEeCCCCCCcccChHHHHHHHH-------cCCcEEEeccCCCCCchHHHHHHHH
Q 029875 83 IPIVLCGNKVDVKNRQVKAKQVTFHRK-------KNLQYYEISAKSNYNFEKPFLYLAR 134 (186)
Q Consensus 83 ~p~ilv~nK~Dl~~~~~~~~~~~~~~~-------~~~~~~~~Sa~~~~gi~~l~~~l~~ 134 (186)
.|+++++||+|+.+.....+...+... .+++++++||++|.|+++++++|++
T Consensus 108 ~p~ilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~ 166 (167)
T cd04160 108 VPLLILANKQDLPDALSVEEIKEVFQDKAEEIGRRDCLVLPVSALEGTGVREGIEWLVE 166 (167)
T ss_pred CCEEEEEEccccccCCCHHHHHHHhccccccccCCceEEEEeeCCCCcCHHHHHHHHhc
Confidence 999999999998764332333333222 2357999999999999999999875
No 115
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.86 E-value=1e-20 Score=136.43 Aligned_cols=133 Identities=30% Similarity=0.471 Sum_probs=114.2
Q ss_pred CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcC-
Q 029875 3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE- 81 (186)
Q Consensus 3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~- 81 (186)
+...+.||.+ +.....+.+++..+.+++||++|+..+..++..++++++++++|||++++.++.++..|...+.....
T Consensus 24 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~ 102 (160)
T cd00876 24 FVEEYDPTIE-DSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYSITDRESFEEIKGYREQILRVKDD 102 (160)
T ss_pred CCcCcCCChh-HeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC
Confidence 4466788888 66677788888889999999999999999999999999999999999999999999999888877654
Q ss_pred -CCCEEEEEeCCCCCC-cccCh-HHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHH
Q 029875 82 -NIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 136 (186)
Q Consensus 82 -~~p~ilv~nK~Dl~~-~~~~~-~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 136 (186)
..|+++|+||+|+.. ..... ....++..++.+++++||++|.|++++|++|++.+
T Consensus 103 ~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~~~i 160 (160)
T cd00876 103 EDIPIVLVGNKCDLENERQVSKEEGKALAKEWGCPFIETSAKDNINIDEVFKLLVREI 160 (160)
T ss_pred CCCcEEEEEECCcccccceecHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHhhC
Confidence 799999999999976 33333 34567777788999999999999999999998753
No 116
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.86 E-value=2.9e-21 Score=141.37 Aligned_cols=128 Identities=19% Similarity=0.239 Sum_probs=101.7
Q ss_pred CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc--
Q 029875 3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-- 80 (186)
Q Consensus 3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-- 80 (186)
+...|.||+|.... .+.+ ..+.+++|||||+..+..++..++++|+++|+|||+++..+|..+..|+..+....
T Consensus 23 ~~~~~~~t~g~~~~--~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~ 98 (167)
T cd04161 23 IPKKVAPTVGFTPT--KLRL--DKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRV 98 (167)
T ss_pred CCccccCcccceEE--EEEE--CCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEECCchhHHHHHHHHHHHHHcCccc
Confidence 45678999997644 3333 45889999999999999999999999999999999999999999999999887653
Q ss_pred CCCCEEEEEeCCCCCCcccChHHH------HHHHHcC--CcEEEeccCCC------CCchHHHHHHHH
Q 029875 81 ENIPIVLCGNKVDVKNRQVKAKQV------TFHRKKN--LQYYEISAKSN------YNFEKPFLYLAR 134 (186)
Q Consensus 81 ~~~p~ilv~nK~Dl~~~~~~~~~~------~~~~~~~--~~~~~~Sa~~~------~gi~~l~~~l~~ 134 (186)
.+.|+++|+||+|+.+.....+.. .++++.+ +.+++|||++| .|+.+.|+||..
T Consensus 99 ~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~g~~~~~~wl~~ 166 (167)
T cd04161 99 SGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKIDPSIVEGLRWLLA 166 (167)
T ss_pred cCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEEeEceeCCCCccccCHHHHHHHHhc
Confidence 579999999999997643222211 2332233 46788999998 899999999974
No 117
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.86 E-value=1.9e-20 Score=136.78 Aligned_cols=121 Identities=17% Similarity=0.221 Sum_probs=98.6
Q ss_pred EEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHH-HHHHHHHhhcCCCCEEEEEeCCCCCC
Q 029875 18 LDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKN 96 (186)
Q Consensus 18 ~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~-~~~~~~~~~~~~~p~ilv~nK~Dl~~ 96 (186)
....+++..+.+.+|||+|++.+...+..+++++|++++|||++++.+|+.+. .|+..+.....+.|+++|+||+|+.+
T Consensus 38 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~ 117 (166)
T cd01893 38 IPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRD 117 (166)
T ss_pred eeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccc
Confidence 44456778899999999999988888888899999999999999999999975 78888877667899999999999976
Q ss_pred cccC----hHHHHHHHHcC--CcEEEeccCCCCCchHHHHHHHHHHhC
Q 029875 97 RQVK----AKQVTFHRKKN--LQYYEISAKSNYNFEKPFLYLARKLAG 138 (186)
Q Consensus 97 ~~~~----~~~~~~~~~~~--~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 138 (186)
.... .....++..++ .+++++||++|.|++++|..+.+.+..
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~~~~~~~~ 165 (166)
T cd01893 118 GSSQAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVFYYAQKAVLH 165 (166)
T ss_pred ccchhHHHHHHHHHHHHHhcccEEEEeccccccCHHHHHHHHHHHhcC
Confidence 4432 12223333332 379999999999999999999987754
No 118
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.85 E-value=3e-20 Score=137.18 Aligned_cols=137 Identities=26% Similarity=0.290 Sum_probs=114.9
Q ss_pred CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc--
Q 029875 3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-- 80 (186)
Q Consensus 3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-- 80 (186)
+...+.||++..+ ...+.+++..+.+++|||||+++|..++..++..++++++|||+++..+|+.+..|+..+.+..
T Consensus 26 ~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~ 104 (180)
T cd04137 26 FVESYYPTIENTF-SKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGK 104 (180)
T ss_pred CccccCcchhhhE-EEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC
Confidence 3456788887666 4567778888999999999999999999999999999999999999999999999988887753
Q ss_pred CCCCEEEEEeCCCCCC-cccChH-HHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCCC
Q 029875 81 ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDP 140 (186)
Q Consensus 81 ~~~p~ilv~nK~Dl~~-~~~~~~-~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~ 140 (186)
.+.|+++|+||+|+.. +..... ...++..++.+++++||++|.|+.++|.++.+.+....
T Consensus 105 ~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~~ 166 (180)
T cd04137 105 ESVPIVLVGNKSDLHTQRQVSTEEGKELAESWGAAFLESSARENENVEEAFELLIEEIEKVE 166 (180)
T ss_pred CCCCEEEEEEchhhhhcCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHhc
Confidence 4789999999999974 333332 34566777889999999999999999999999987654
No 119
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.85 E-value=6.9e-21 Score=137.87 Aligned_cols=125 Identities=18% Similarity=0.269 Sum_probs=95.1
Q ss_pred cccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhh--cCCC
Q 029875 6 WGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENI 83 (186)
Q Consensus 6 ~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~--~~~~ 83 (186)
.+.||+|.++.... +..+.+++|||||++.+..++..++++++++|+|+|++++.++.....|+..+.+. ..+.
T Consensus 26 ~~~~t~~~~~~~~~----~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (158)
T cd04151 26 TTIPTIGFNVETVT----YKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGA 101 (158)
T ss_pred CcCCccCcCeEEEE----ECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCC
Confidence 46799998775332 35688999999999999999999999999999999999998887766665554332 2579
Q ss_pred CEEEEEeCCCCCCcccChHHHH-HH----HHcCCcEEEeccCCCCCchHHHHHHHH
Q 029875 84 PIVLCGNKVDVKNRQVKAKQVT-FH----RKKNLQYYEISAKSNYNFEKPFLYLAR 134 (186)
Q Consensus 84 p~ilv~nK~Dl~~~~~~~~~~~-~~----~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 134 (186)
|+++|+||+|+.+.....+... +. ...+.+++++||++|.|++++|++|++
T Consensus 102 piiiv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 157 (158)
T cd04151 102 VLLVFANKQDMPGALSEAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMDWLVN 157 (158)
T ss_pred cEEEEEeCCCCCCCCCHHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHHHHhc
Confidence 9999999999975431122111 11 111246999999999999999999874
No 120
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.85 E-value=7.2e-21 Score=140.14 Aligned_cols=125 Identities=21% Similarity=0.304 Sum_probs=98.2
Q ss_pred cccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc--CCC
Q 029875 6 WGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENI 83 (186)
Q Consensus 6 ~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~--~~~ 83 (186)
.+.||+|.++....+ ..+.+.+|||||++.+...+..+++++|++|+|+|++++.++.....|+..+.+.. .+.
T Consensus 42 ~~~~t~~~~~~~~~~----~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~ 117 (174)
T cd04153 42 HTSPTIGSNVEEIVY----KNIRFLMWDIGGQESLRSSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKA 117 (174)
T ss_pred CcCCccccceEEEEE----CCeEEEEEECCCCHHHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCC
Confidence 367999988754333 36889999999999999999999999999999999999999988877777765432 469
Q ss_pred CEEEEEeCCCCCCcccChHHH-HHH----HHcCCcEEEeccCCCCCchHHHHHHHH
Q 029875 84 PIVLCGNKVDVKNRQVKAKQV-TFH----RKKNLQYYEISAKSNYNFEKPFLYLAR 134 (186)
Q Consensus 84 p~ilv~nK~Dl~~~~~~~~~~-~~~----~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 134 (186)
|+++++||+|+.+.....+.. .+. ...+++++++||++|.||+++|++|++
T Consensus 118 p~viv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~gi~e~~~~l~~ 173 (174)
T cd04153 118 VLLVLANKQDLKGAMTPAEISESLGLTSIRDHTWHIQGCCALTGEGLPEGLDWIAS 173 (174)
T ss_pred CEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEecccCCCCCHHHHHHHHhc
Confidence 999999999997632222221 221 223457899999999999999999874
No 121
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.85 E-value=3.4e-21 Score=139.46 Aligned_cols=126 Identities=18% Similarity=0.272 Sum_probs=98.2
Q ss_pred cccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc--CCC
Q 029875 6 WGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENI 83 (186)
Q Consensus 6 ~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~--~~~ 83 (186)
.+.||+|.++....+ +..+.+.+|||+|++.+..++..++++++++|+|+|++++.++..+..|+..+.+.. .+.
T Consensus 26 ~~~~t~~~~~~~~~~---~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (160)
T cd04156 26 TTIPTVGFNVEMLQL---EKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGV 102 (160)
T ss_pred cccCccCcceEEEEe---CCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCC
Confidence 457999977654332 356899999999999999999999999999999999999999999888888776532 579
Q ss_pred CEEEEEeCCCCCCcccChHHHH------HHHHcCCcEEEeccCCCCCchHHHHHHHH
Q 029875 84 PIVLCGNKVDVKNRQVKAKQVT------FHRKKNLQYYEISAKSNYNFEKPFLYLAR 134 (186)
Q Consensus 84 p~ilv~nK~Dl~~~~~~~~~~~------~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 134 (186)
|+++|+||+|+.......+... ++...++++++|||++|.|++++|++|.+
T Consensus 103 piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~i~~ 159 (160)
T cd04156 103 PVVLLANKQDLPGALTAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAFRKLAS 159 (160)
T ss_pred CEEEEEECcccccCcCHHHHHHHcCCcccCCCCcEEEEecccccCCChHHHHHHHhc
Confidence 9999999999964321122111 11223356899999999999999999864
No 122
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.85 E-value=1.8e-20 Score=138.33 Aligned_cols=127 Identities=20% Similarity=0.353 Sum_probs=103.7
Q ss_pred cccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhh--cCCC
Q 029875 6 WGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENI 83 (186)
Q Consensus 6 ~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~--~~~~ 83 (186)
.+.||+|+++....+ ..+.+.+||.+|+..++.+|+.|+.+++++|||+|+++...+.+....+..+... ..+.
T Consensus 41 ~~~pT~g~~~~~i~~----~~~~~~~~d~gG~~~~~~~w~~y~~~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~ 116 (175)
T PF00025_consen 41 ETIPTIGFNIEEIKY----KGYSLTIWDLGGQESFRPLWKSYFQNADGIIFVVDSSDPERLQEAKEELKELLNDPELKDI 116 (175)
T ss_dssp EEEEESSEEEEEEEE----TTEEEEEEEESSSGGGGGGGGGGHTTESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTS
T ss_pred ccCcccccccceeee----CcEEEEEEeccccccccccceeeccccceeEEEEecccceeecccccchhhhcchhhcccc
Confidence 478999999886665 5678899999999999999999999999999999999998888888777777664 2579
Q ss_pred CEEEEEeCCCCCCcccChHHHHHHH------HcCCcEEEeccCCCCCchHHHHHHHHHH
Q 029875 84 PIVLCGNKVDVKNRQVKAKQVTFHR------KKNLQYYEISAKSNYNFEKPFLYLARKL 136 (186)
Q Consensus 84 p~ilv~nK~Dl~~~~~~~~~~~~~~------~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 136 (186)
|++|++||+|+++.....+...... ...+.++.|||.+|.|+.+.|+||.+++
T Consensus 117 piLIl~NK~D~~~~~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g~Gv~e~l~WL~~~~ 175 (175)
T PF00025_consen 117 PILILANKQDLPDAMSEEEIKEYLGLEKLKNKRPWSVFSCSAKTGEGVDEGLEWLIEQI 175 (175)
T ss_dssp EEEEEEESTTSTTSSTHHHHHHHTTGGGTTSSSCEEEEEEBTTTTBTHHHHHHHHHHHH
T ss_pred eEEEEeccccccCcchhhHHHhhhhhhhcccCCceEEEeeeccCCcCHHHHHHHHHhcC
Confidence 9999999999986433333222111 2235689999999999999999999875
No 123
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.85 E-value=1.2e-20 Score=138.97 Aligned_cols=124 Identities=15% Similarity=0.183 Sum_probs=95.9
Q ss_pred cceEEEEEEEEEE-----CCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCC
Q 029875 10 TIGVEVHPLDFFT-----NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP 84 (186)
Q Consensus 10 Tig~~~~~~~~~~-----~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p 84 (186)
+.|+++......+ ++..+.++||||||++.|..++..+++++|++|+|||+++..+++....|..... .+.|
T Consensus 45 ~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~---~~~~ 121 (179)
T cd01890 45 ERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFSYEVSRSLAACEGALLLVDATQGVEAQTLANFYLALE---NNLE 121 (179)
T ss_pred HCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhHHHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHH---cCCC
Confidence 3466666554443 6778999999999999999999999999999999999999877776666643322 3789
Q ss_pred EEEEEeCCCCCCcccChHHHHHHHHcCC---cEEEeccCCCCCchHHHHHHHHHH
Q 029875 85 IVLCGNKVDVKNRQVKAKQVTFHRKKNL---QYYEISAKSNYNFEKPFLYLARKL 136 (186)
Q Consensus 85 ~ilv~nK~Dl~~~~~~~~~~~~~~~~~~---~~~~~Sa~~~~gi~~l~~~l~~~i 136 (186)
+++|+||+|+.+........++++.+++ +++++||++|.|++++|+++.+.+
T Consensus 122 iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 176 (179)
T cd01890 122 IIPVINKIDLPSADPERVKQQIEDVLGLDPSEAILVSAKTGLGVEDLLEAIVERI 176 (179)
T ss_pred EEEEEECCCCCcCCHHHHHHHHHHHhCCCcccEEEeeccCCCCHHHHHHHHHhhC
Confidence 9999999998643221222355555565 489999999999999999998775
No 124
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=7.1e-20 Score=132.40 Aligned_cols=129 Identities=22% Similarity=0.298 Sum_probs=106.5
Q ss_pred cccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc--CCC
Q 029875 6 WGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENI 83 (186)
Q Consensus 6 ~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~--~~~ 83 (186)
...||||+++....+ +++++++||.+||++++.+|+.|+++.+++|||+|+++++.+.+.+.-+..+.... .+.
T Consensus 44 ttvPTiGfnVE~v~y----kn~~f~vWDvGGq~k~R~lW~~Y~~~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~ 119 (181)
T KOG0070|consen 44 TTVPTIGFNVETVEY----KNISFTVWDVGGQEKLRPLWKHYFQNTQGLIFVVDSSDRERIEEAKEELHRMLAEPELRNA 119 (181)
T ss_pred cCCCccccceeEEEE----cceEEEEEecCCCcccccchhhhccCCcEEEEEEeCCcHHHHHHHHHHHHHHHcCcccCCc
Confidence 448999999998887 69999999999999999999999999999999999999998888776666655543 589
Q ss_pred CEEEEEeCCCCCCcccChHHHHHHHH-----cCCcEEEeccCCCCCchHHHHHHHHHHhC
Q 029875 84 PIVLCGNKVDVKNRQVKAKQVTFHRK-----KNLQYYEISAKSNYNFEKPFLYLARKLAG 138 (186)
Q Consensus 84 p~ilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 138 (186)
|+++.+||.|+++.-...+....... ....+..|||.+|.|+.+.++++...+..
T Consensus 120 ~llv~aNKqD~~~als~~ei~~~L~l~~l~~~~w~iq~~~a~~G~GL~egl~wl~~~~~~ 179 (181)
T KOG0070|consen 120 PLLVFANKQDLPGALSAAEITNKLGLHSLRSRNWHIQSTCAISGEGLYEGLDWLSNNLKK 179 (181)
T ss_pred eEEEEechhhccccCCHHHHHhHhhhhccCCCCcEEeeccccccccHHHHHHHHHHHHhc
Confidence 99999999999876554443322211 23468899999999999999999988754
No 125
>PLN00023 GTP-binding protein; Provisional
Probab=99.84 E-value=4.7e-20 Score=146.17 Aligned_cols=110 Identities=20% Similarity=0.351 Sum_probs=93.3
Q ss_pred CCccccccceEEEEEEEEEECC-------------eEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhH
Q 029875 3 VSVWGKATIGVEVHPLDFFTNC-------------GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV 69 (186)
Q Consensus 3 ~~~~~~~Tig~~~~~~~~~~~~-------------~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i 69 (186)
+...|.||+|+++..+.+.+++ ..+.++||||+|+++|..++..++++++++|+|||++++.+|+.+
T Consensus 46 F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfrsL~~~yyr~AdgiILVyDITdr~SFenL 125 (334)
T PLN00023 46 SIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERYKDCRSLFYSQINGVIFVHDLSQRRTKTSL 125 (334)
T ss_pred cccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhhhhhhHHhccCCCEEEEEEeCCCHHHHHHH
Confidence 4567899999999888777642 569999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhc-------------CCCCEEEEEeCCCCCCc----c----cChHHHHHHHHcCC
Q 029875 70 PTWHRDLCRVC-------------ENIPIVLCGNKVDVKNR----Q----VKAKQVTFHRKKNL 112 (186)
Q Consensus 70 ~~~~~~~~~~~-------------~~~p~ilv~nK~Dl~~~----~----~~~~~~~~~~~~~~ 112 (186)
..|++.+.... .+.|++|||||+||.++ . ..+++.+|++++++
T Consensus 126 ~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~~r~~s~~~~e~a~~~A~~~g~ 189 (334)
T PLN00023 126 QKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEGTRGSSGNLVDAARQWVEKQGL 189 (334)
T ss_pred HHHHHHHHHhcccccccccccccCCCCcEEEEEECccccccccccccccccHHHHHHHHHHcCC
Confidence 99999998753 14899999999999653 2 12446689988874
No 126
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.83 E-value=3.8e-20 Score=133.72 Aligned_cols=126 Identities=20% Similarity=0.316 Sum_probs=101.1
Q ss_pred ccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc--CC
Q 029875 5 VWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--EN 82 (186)
Q Consensus 5 ~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~--~~ 82 (186)
..+.||+|..+....+ ..+.+.+|||||++.+..++..++++++++++|||++++.++.....|+..+.... .+
T Consensus 25 ~~~~~t~~~~~~~~~~----~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (158)
T cd00878 25 VTTIPTIGFNVETVEY----KNVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKG 100 (158)
T ss_pred CCCCCCcCcceEEEEE----CCEEEEEEECCCChhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCC
Confidence 4678899977754433 36789999999999999999999999999999999999999999888888776643 57
Q ss_pred CCEEEEEeCCCCCCcccChHHHHHH-----HHcCCcEEEeccCCCCCchHHHHHHHH
Q 029875 83 IPIVLCGNKVDVKNRQVKAKQVTFH-----RKKNLQYYEISAKSNYNFEKPFLYLAR 134 (186)
Q Consensus 83 ~p~ilv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 134 (186)
.|+++++||+|+.......+..... .....+++++||++|.|++++|++|..
T Consensus 101 ~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~l~~ 157 (158)
T cd00878 101 VPLLIFANKQDLPGALSVSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLDWLLQ 157 (158)
T ss_pred CcEEEEeeccCCccccCHHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHHHHhh
Confidence 9999999999997543222222222 223467999999999999999999875
No 127
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.83 E-value=3e-20 Score=138.36 Aligned_cols=127 Identities=16% Similarity=0.254 Sum_probs=99.5
Q ss_pred cccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc--CCC
Q 029875 6 WGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENI 83 (186)
Q Consensus 6 ~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~--~~~ 83 (186)
.|.||++..... +.++ .+.+.+||+||+..+..++..++++++++++|+|+++..+|.....|+..+.+.. .+.
T Consensus 46 ~~~~T~~~~~~~--i~~~--~~~~~l~D~~G~~~~~~~~~~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~ 121 (190)
T cd00879 46 QHVPTLHPTSEE--LTIG--NIKFKTFDLGGHEQARRLWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLSDEELANV 121 (190)
T ss_pred ccCCccCcceEE--EEEC--CEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCC
Confidence 578899876543 4444 3678899999999998889999999999999999999999988888888876543 569
Q ss_pred CEEEEEeCCCCCCcccChHHHHHHHH----------------cCCcEEEeccCCCCCchHHHHHHHHHH
Q 029875 84 PIVLCGNKVDVKNRQVKAKQVTFHRK----------------KNLQYYEISAKSNYNFEKPFLYLARKL 136 (186)
Q Consensus 84 p~ilv~nK~Dl~~~~~~~~~~~~~~~----------------~~~~~~~~Sa~~~~gi~~l~~~l~~~i 136 (186)
|+++++||+|+.......+...++.. ...++++|||++|.|++++|.+|++.+
T Consensus 122 pvivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~e~~~~l~~~~ 190 (190)
T cd00879 122 PFLILGNKIDLPGAVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEVFMCSVVKRQGYGEAFRWLSQYL 190 (190)
T ss_pred CEEEEEeCCCCCCCcCHHHHHHHhCcccccccccccccccCceeEEEEEeEecCCCChHHHHHHHHhhC
Confidence 99999999999753222233333321 124689999999999999999998653
No 128
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.81 E-value=1.4e-19 Score=134.61 Aligned_cols=126 Identities=16% Similarity=0.248 Sum_probs=97.8
Q ss_pred cccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhh--cCCC
Q 029875 6 WGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENI 83 (186)
Q Consensus 6 ~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~--~~~~ 83 (186)
.+.||++....... + ..+.+.+|||||+..+..++..++++++++|+|+|++++.++.....|+..+.+. ..+.
T Consensus 44 ~~~~t~~~~~~~~~--~--~~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~ 119 (184)
T smart00178 44 QHQPTQHPTSEELA--I--GNIKFTTFDLGGHQQARRLWKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATV 119 (184)
T ss_pred ccCCccccceEEEE--E--CCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCC
Confidence 46788887655432 3 3578899999999999999999999999999999999999998888888777653 2579
Q ss_pred CEEEEEeCCCCCCcccChHHHHHH---H-H--------cCCcEEEeccCCCCCchHHHHHHHHH
Q 029875 84 PIVLCGNKVDVKNRQVKAKQVTFH---R-K--------KNLQYYEISAKSNYNFEKPFLYLARK 135 (186)
Q Consensus 84 p~ilv~nK~Dl~~~~~~~~~~~~~---~-~--------~~~~~~~~Sa~~~~gi~~l~~~l~~~ 135 (186)
|+++|+||+|++......+..+.. . . ....++.|||++|.|+++++++|..+
T Consensus 120 piliv~NK~Dl~~~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~~~~wl~~~ 183 (184)
T smart00178 120 PFLILGNKIDAPYAASEDELRYALGLTNTTGSKGKVGVRPLEVFMCSVVRRMGYGEGFKWLSQY 183 (184)
T ss_pred CEEEEEeCccccCCCCHHHHHHHcCCCcccccccccCCceeEEEEeecccCCChHHHHHHHHhh
Confidence 999999999997533222222211 1 0 12358999999999999999999865
No 129
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.81 E-value=3.5e-19 Score=127.78 Aligned_cols=128 Identities=21% Similarity=0.355 Sum_probs=100.4
Q ss_pred CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc--
Q 029875 3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-- 80 (186)
Q Consensus 3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-- 80 (186)
+...+.||+|.++.... . ..+.+.+|||+|+..+..++..++++++++++|+|+++..++.....|+..+....
T Consensus 24 ~~~~~~~t~~~~~~~~~--~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~ 99 (159)
T cd04159 24 FSEDTIPTVGFNMRKVT--K--GNVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDAADRTALEAAKNELHDLLEKPSL 99 (159)
T ss_pred CCcCccCCCCcceEEEE--E--CCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHcChhh
Confidence 45678999998887533 2 34889999999999999999999999999999999999999988877777765432
Q ss_pred CCCCEEEEEeCCCCCCcccChHHHHHH-----HHcCCcEEEeccCCCCCchHHHHHHHH
Q 029875 81 ENIPIVLCGNKVDVKNRQVKAKQVTFH-----RKKNLQYYEISAKSNYNFEKPFLYLAR 134 (186)
Q Consensus 81 ~~~p~ilv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 134 (186)
.+.|+++|+||+|+.+........... ...+++++++||++|.|++++++++.+
T Consensus 100 ~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 158 (159)
T cd04159 100 EGIPLLVLGNKNDLPGALSVDELIEQMNLKSITDREVSCYSISCKEKTNIDIVLDWLIK 158 (159)
T ss_pred cCCCEEEEEeCccccCCcCHHHHHHHhCcccccCCceEEEEEEeccCCChHHHHHHHhh
Confidence 578999999999987543222221111 122357899999999999999999875
No 130
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.80 E-value=1.2e-18 Score=123.46 Aligned_cols=129 Identities=16% Similarity=0.263 Sum_probs=106.3
Q ss_pred cccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhh--cCCC
Q 029875 6 WGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENI 83 (186)
Q Consensus 6 ~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~--~~~~ 83 (186)
...||.|+++....+ ..+++++||.+||..+++.|+.||..+|++|+|+|++++-.+++...-++.+... ....
T Consensus 43 ~i~pt~gf~Iktl~~----~~~~L~iwDvGGq~~lr~~W~nYfestdglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~ 118 (185)
T KOG0073|consen 43 TISPTLGFQIKTLEY----KGYTLNIWDVGGQKTLRSYWKNYFESTDGLIWVVDSSDRMRMQECKQELTELLVEERLAGA 118 (185)
T ss_pred ccCCccceeeEEEEe----cceEEEEEEcCCcchhHHHHHHhhhccCeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCC
Confidence 457999988887666 7889999999999999999999999999999999999999998887666665443 2578
Q ss_pred CEEEEEeCCCCCCcccChHH------HHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhC
Q 029875 84 PIVLCGNKVDVKNRQVKAKQ------VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG 138 (186)
Q Consensus 84 p~ilv~nK~Dl~~~~~~~~~------~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 138 (186)
|++|++||.|++..-...+. ..+++...++++.|||.+|+++.+.+.|++..+..
T Consensus 119 ~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~~~l~~cs~~tge~l~~gidWL~~~l~~ 179 (185)
T KOG0073|consen 119 PLLVLANKQDLPGALSLEEISKALDLEELAKSHHWRLVKCSAVTGEDLLEGIDWLCDDLMS 179 (185)
T ss_pred ceEEEEecCcCccccCHHHHHHhhCHHHhccccCceEEEEeccccccHHHHHHHHHHHHHH
Confidence 99999999999853222221 24446667899999999999999999999988865
No 131
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.78 E-value=2.8e-18 Score=118.73 Aligned_cols=132 Identities=21% Similarity=0.308 Sum_probs=106.8
Q ss_pred CCCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhh--
Q 029875 2 NVSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV-- 79 (186)
Q Consensus 2 ~~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~-- 79 (186)
+.+...+||+|+++...++ +++.+..||.+|+++.+.+|++||.+..++|||+|+.+++..++.+.-+..+.+.
T Consensus 40 ~~~~~~ipTvGFnvetVty----kN~kfNvwdvGGqd~iRplWrhYy~gtqglIFV~Dsa~~dr~eeAr~ELh~ii~~~e 115 (180)
T KOG0071|consen 40 GQSVTTIPTVGFNVETVTY----KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSADRDRIEEARNELHRIINDRE 115 (180)
T ss_pred CCCcccccccceeEEEEEe----eeeEEeeeeccCchhhhHHHHhhccCCceEEEEEeccchhhHHHHHHHHHHHhCCHh
Confidence 4566789999999998888 8999999999999999999999999999999999999988877776555444433
Q ss_pred cCCCCEEEEEeCCCCCCcccChHHH---HHH--HHcCCcEEEeccCCCCCchHHHHHHHHHHh
Q 029875 80 CENIPIVLCGNKVDVKNRQVKAKQV---TFH--RKKNLQYYEISAKSNYNFEKPFLYLARKLA 137 (186)
Q Consensus 80 ~~~~p~ilv~nK~Dl~~~~~~~~~~---~~~--~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 137 (186)
..+.|++|.+||.|++.....++.. ++- +....-+..+||.+|.|+.+-|.++...+.
T Consensus 116 m~~~~~LvlANkQDlp~A~~pqei~d~leLe~~r~~~W~vqp~~a~~gdgL~eglswlsnn~~ 178 (180)
T KOG0071|consen 116 MRDAIILILANKQDLPDAMKPQEIQDKLELERIRDRNWYVQPSCALSGDGLKEGLSWLSNNLK 178 (180)
T ss_pred hhcceEEEEecCcccccccCHHHHHHHhccccccCCccEeeccccccchhHHHHHHHHHhhcc
Confidence 2579999999999999765555543 222 222345779999999999999999987653
No 132
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=99.77 E-value=3.5e-18 Score=120.20 Aligned_cols=138 Identities=22% Similarity=0.279 Sum_probs=120.2
Q ss_pred CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCC
Q 029875 3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCEN 82 (186)
Q Consensus 3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~ 82 (186)
.|.+|.-|.|+++..+++.+.+..+.+.|||.+|++++..+....-+++-+++|+||.+.+.++..+..|+++.+.....
T Consensus 45 ~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaIlFmFDLt~r~TLnSi~~WY~QAr~~Nkt 124 (205)
T KOG1673|consen 45 YDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAILFMFDLTRRSTLNSIKEWYRQARGLNKT 124 (205)
T ss_pred hHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEEEEEEEecCchHHHHHHHHHHHHHhccCCc
Confidence 46788899999999999999999999999999999999999999999999999999999999999999999999988765
Q ss_pred CCEEEEEeCCCCCC-------cccChHHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCCC
Q 029875 83 IPIVLCGNKVDVKN-------RQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDP 140 (186)
Q Consensus 83 ~p~ilv~nK~Dl~~-------~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~ 140 (186)
.--|+||+|.|+-= ..+....+..++-.+.+.+.||+..+.||+.+|..+..++...+
T Consensus 125 AiPilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts~sINv~KIFK~vlAklFnL~ 189 (205)
T KOG1673|consen 125 AIPILVGTKYDLFIDLPPELQETISRQARKYAKVMNASLFFCSTSHSINVQKIFKIVLAKLFNLP 189 (205)
T ss_pred cceEEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeeccccccHHHHHHHHHHHHhCCc
Confidence 55677899999731 12223344666777899999999999999999999998887654
No 133
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.77 E-value=6.6e-18 Score=123.08 Aligned_cols=113 Identities=13% Similarity=0.111 Sum_probs=82.3
Q ss_pred eEEEEEEEeCCCccccCCccc---------cccccCcEEEEEEeCCChhhH--HhHHHHHHHHHhhcCCCCEEEEEeCCC
Q 029875 25 GKIRFYCWDTAGQEKFGGLRD---------GYYIHGQCAIIMFDVTARLTY--KNVPTWHRDLCRVCENIPIVLCGNKVD 93 (186)
Q Consensus 25 ~~~~l~l~Dt~G~~~~~~~~~---------~~~~~ad~vilv~D~~~~~s~--~~i~~~~~~~~~~~~~~p~ilv~nK~D 93 (186)
..+.++||||||+.......+ .....+|++|+|+|+++..++ +....|++.+.....+.|+++|+||+|
T Consensus 45 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~pvilv~NK~D 124 (168)
T cd01897 45 KYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVIVVLNKID 124 (168)
T ss_pred CceEEEEEECCCcCCccccCCchHHHHHHHHHHhccCcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCCeEEEEEccc
Confidence 457899999999853211101 011236899999999987654 555678888876656899999999999
Q ss_pred CCCcccChHHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHh
Q 029875 94 VKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLA 137 (186)
Q Consensus 94 l~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 137 (186)
+.+.....+..++....+.+++++||++|.|++++|+++.+.+.
T Consensus 125 l~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 168 (168)
T cd01897 125 LLTFEDLSEIEEEEELEGEEVLKISTLTEEGVDEVKNKACELLL 168 (168)
T ss_pred cCchhhHHHHHHhhhhccCceEEEEecccCCHHHHHHHHHHHhC
Confidence 97533222233445555678999999999999999999998763
No 134
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.77 E-value=3.9e-18 Score=118.88 Aligned_cols=132 Identities=18% Similarity=0.278 Sum_probs=103.1
Q ss_pred CCCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc-
Q 029875 2 NVSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC- 80 (186)
Q Consensus 2 ~~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~- 80 (186)
++..+-.||+|++.... +.+.+.+.+||.|||.+|+.+|+.|+++++++++|+|+.+++.+...+.-+..+....
T Consensus 44 ~~~edmiptvGfnmrk~----tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY~VDaad~~k~~~sr~EL~~LL~k~~ 119 (186)
T KOG0075|consen 44 QYLEDMIPTVGFNMRKV----TKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYVVDAADPDKLEASRSELHDLLDKPS 119 (186)
T ss_pred cchhhhcccccceeEEe----ccCceEEEEEecCCCccHHHHHHHHhhcCcEEEEEeecCCcccchhhHHHHHHHhcchh
Confidence 34566789999988754 4488999999999999999999999999999999999999887766555444444332
Q ss_pred -CCCCEEEEEeCCCCCCcccChHHHHHHH-----HcCCcEEEeccCCCCCchHHHHHHHHHHh
Q 029875 81 -ENIPIVLCGNKVDVKNRQVKAKQVTFHR-----KKNLQYYEISAKSNYNFEKPFLYLARKLA 137 (186)
Q Consensus 81 -~~~p~ilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 137 (186)
...|+++.|||.|+++.-.......-+. ...+.+|-+|++...||+.+.+|++++..
T Consensus 120 l~gip~LVLGnK~d~~~AL~~~~li~rmgL~sitdREvcC~siScke~~Nid~~~~Wli~hsk 182 (186)
T KOG0075|consen 120 LTGIPLLVLGNKIDLPGALSKIALIERMGLSSITDREVCCFSISCKEKVNIDITLDWLIEHSK 182 (186)
T ss_pred hcCCcEEEecccccCcccccHHHHHHHhCccccccceEEEEEEEEcCCccHHHHHHHHHHHhh
Confidence 5799999999999987544333222111 11246999999999999999999998764
No 135
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.76 E-value=5.7e-18 Score=124.06 Aligned_cols=122 Identities=16% Similarity=0.305 Sum_probs=94.6
Q ss_pred cccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc--CCC
Q 029875 6 WGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENI 83 (186)
Q Consensus 6 ~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~--~~~ 83 (186)
.+.||.|.++.... .+ ...+.+||++|+..+...+..++++++++++|+|+++..++.....|+..+.... .+.
T Consensus 41 ~~~~t~g~~~~~i~--~~--~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (173)
T cd04155 41 HITPTQGFNIKTVQ--SD--GFKLNVWDIGGQRAIRPYWRNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGV 116 (173)
T ss_pred ccCCCCCcceEEEE--EC--CEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCC
Confidence 46789997765433 33 4678999999999988888899999999999999999988888777776665432 479
Q ss_pred CEEEEEeCCCCCCcccChHHHHHHHHcC--------CcEEEeccCCCCCchHHHHHHHH
Q 029875 84 PIVLCGNKVDVKNRQVKAKQVTFHRKKN--------LQYYEISAKSNYNFEKPFLYLAR 134 (186)
Q Consensus 84 p~ilv~nK~Dl~~~~~~~~~~~~~~~~~--------~~~~~~Sa~~~~gi~~l~~~l~~ 134 (186)
|+++++||+|+.+..... .+....+ .+++++||++|.|++++|++|++
T Consensus 117 p~ivv~nK~D~~~~~~~~---~i~~~l~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~ 172 (173)
T cd04155 117 PVLVFANKQDLATAAPAE---EIAEALNLHDLRDRTWHIQACSAKTGEGLQEGMNWVCK 172 (173)
T ss_pred CEEEEEECCCCccCCCHH---HHHHHcCCcccCCCeEEEEEeECCCCCCHHHHHHHHhc
Confidence 999999999986432111 2222222 24789999999999999999975
No 136
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=99.75 E-value=4.7e-20 Score=133.16 Aligned_cols=140 Identities=32% Similarity=0.462 Sum_probs=119.7
Q ss_pred CCCccccccceEEEEEEEEEECCe-EEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc
Q 029875 2 NVSVWGKATIGVEVHPLDFFTNCG-KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC 80 (186)
Q Consensus 2 ~~~~~~~~Tig~~~~~~~~~~~~~-~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~ 80 (186)
+++..|..|||++|..+.+..+.+ .++++|||.+||++|..|.+-|++.|++..+|||+++..+|+....|.+.+..-.
T Consensus 49 nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~~~iVfdvt~s~tfe~~skwkqdldsk~ 128 (229)
T KOG4423|consen 49 NFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHGAFIVFDVTRSLTFEPVSKWKQDLDSKL 128 (229)
T ss_pred HHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcceEEEEEccccccccHHHHHHHhccCcc
Confidence 356789999999999888887654 4999999999999999999999999999999999999999999999999875432
Q ss_pred -----CCCCEEEEEeCCCCCCcccChH---HHHHHHHcCC-cEEEeccCCCCCchHHHHHHHHHHhCCCC
Q 029875 81 -----ENIPIVLCGNKVDVKNRQVKAK---QVTFHRKKNL-QYYEISAKSNYNFEKPFLYLARKLAGDPN 141 (186)
Q Consensus 81 -----~~~p~ilv~nK~Dl~~~~~~~~---~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~ 141 (186)
.-.|+++.+||||......... .-++++++++ ..+++|+|.+.|+.|+-..+++.+.-+..
T Consensus 129 qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf~gwtets~Kenkni~Ea~r~lVe~~lvnd~ 198 (229)
T KOG4423|consen 129 QLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGFEGWTETSAKENKNIPEAQRELVEKILVNDE 198 (229)
T ss_pred cCCCCCcchheeccchhccChHhhhhhHHHHHHHHhccCccceeeeccccccChhHHHHHHHHHHHhhcc
Confidence 2478999999999876444332 3377788886 59999999999999999999999987653
No 137
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.74 E-value=3.1e-17 Score=118.72 Aligned_cols=121 Identities=15% Similarity=0.040 Sum_probs=81.9
Q ss_pred cccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCC---hhhHHhHHHHHHHHHhhcCCCC
Q 029875 8 KATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTA---RLTYKNVPTWHRDLCRVCENIP 84 (186)
Q Consensus 8 ~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~---~~s~~~i~~~~~~~~~~~~~~p 84 (186)
.+++..+.....+.+.+ ...+++|||||+++|......++++||++++|+|+++ ..+++.+ ..+.. ....|
T Consensus 33 ~~~~t~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~V~d~~~~~~~~~~~~~----~~~~~-~~~~~ 106 (164)
T cd04171 33 KRGITIDLGFAYLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGIDLVLLVVAADEGIMPQTREHL----EILEL-LGIKR 106 (164)
T ss_pred ccCceEEeeeEEEEecC-CcEEEEEECCChHHHHHHHHhhhhcCCEEEEEEECCCCccHhHHHHH----HHHHH-hCCCc
Confidence 34333444334444442 4589999999999987766778889999999999987 3333322 22221 12349
Q ss_pred EEEEEeCCCCCCcc----cChHHHHHHHH---cCCcEEEeccCCCCCchHHHHHHHH
Q 029875 85 IVLCGNKVDVKNRQ----VKAKQVTFHRK---KNLQYYEISAKSNYNFEKPFLYLAR 134 (186)
Q Consensus 85 ~ilv~nK~Dl~~~~----~~~~~~~~~~~---~~~~~~~~Sa~~~~gi~~l~~~l~~ 134 (186)
+++++||+|+.+.. ...+..++... .+.+++++||++|.|+++++..+.+
T Consensus 107 ~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 163 (164)
T cd04171 107 GLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAVTGEGIEELKEYLDE 163 (164)
T ss_pred EEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCCCcCHHHHHHHHhh
Confidence 99999999997532 11222233333 3578999999999999999998754
No 138
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.72 E-value=4.3e-17 Score=140.18 Aligned_cols=125 Identities=14% Similarity=0.148 Sum_probs=96.7
Q ss_pred ceEEEEEEEEEE-----CCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCE
Q 029875 11 IGVEVHPLDFFT-----NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 85 (186)
Q Consensus 11 ig~~~~~~~~~~-----~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ 85 (186)
.|+++....+.+ ++..+.+.||||||+.+|...+..+++.||++|+|+|+++..+++....|...+. .+.|+
T Consensus 49 rGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~dF~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~---~~ipi 125 (595)
T TIGR01393 49 RGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDFSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE---NDLEI 125 (595)
T ss_pred cCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHHHHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH---cCCCE
Confidence 366666554433 5677999999999999999999999999999999999999777776666654433 37899
Q ss_pred EEEEeCCCCCCcccChHHHHHHHHcCC---cEEEeccCCCCCchHHHHHHHHHHhC
Q 029875 86 VLCGNKVDVKNRQVKAKQVTFHRKKNL---QYYEISAKSNYNFEKPFLYLARKLAG 138 (186)
Q Consensus 86 ilv~nK~Dl~~~~~~~~~~~~~~~~~~---~~~~~Sa~~~~gi~~l~~~l~~~i~~ 138 (186)
++|+||+|+.+........++...+++ +++.+||++|.|++++|+++++.+..
T Consensus 126 IiViNKiDl~~~~~~~~~~el~~~lg~~~~~vi~vSAktG~GI~~Lle~I~~~lp~ 181 (595)
T TIGR01393 126 IPVINKIDLPSADPERVKKEIEEVIGLDASEAILASAKTGIGIEEILEAIVKRVPP 181 (595)
T ss_pred EEEEECcCCCccCHHHHHHHHHHHhCCCcceEEEeeccCCCCHHHHHHHHHHhCCC
Confidence 999999999753222222345555555 48999999999999999999987753
No 139
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.72 E-value=1.4e-16 Score=121.13 Aligned_cols=137 Identities=29% Similarity=0.378 Sum_probs=112.1
Q ss_pred CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChh-hHHhHHHHHHHHHhhc-
Q 029875 3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARL-TYKNVPTWHRDLCRVC- 80 (186)
Q Consensus 3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~-s~~~i~~~~~~~~~~~- 80 (186)
++..|.||+|..+...+....+..+.+.+|||+|+++|+.++..|+.+++++++|||.++.. +++....|.+.+....
T Consensus 30 ~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~ 109 (219)
T COG1100 30 FPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAP 109 (219)
T ss_pred CcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEEEecccchhhhHHHHHHHHHHHHhCC
Confidence 45678899999999999988877999999999999999999999999999999999999955 5555679999998887
Q ss_pred CCCCEEEEEeCCCCCCccc-------------ChHH-HHHHHH---cCCcEEEeccC--CCCCchHHHHHHHHHHhCC
Q 029875 81 ENIPIVLCGNKVDVKNRQV-------------KAKQ-VTFHRK---KNLQYYEISAK--SNYNFEKPFLYLARKLAGD 139 (186)
Q Consensus 81 ~~~p~ilv~nK~Dl~~~~~-------------~~~~-~~~~~~---~~~~~~~~Sa~--~~~gi~~l~~~l~~~i~~~ 139 (186)
...|+++++||+|+..... .... ...+.. ....++++|++ ++.|+.++|..++..+...
T Consensus 110 ~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~v~~~~~~~~~~~~~~ 187 (219)
T COG1100 110 DDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETSAKSLTGPNVNELFKELLRKLLEE 187 (219)
T ss_pred CCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeEeecccCCCcCHHHHHHHHHHHHHHh
Confidence 4799999999999986432 1111 111111 13348999999 9999999999999999754
No 140
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.72 E-value=9.9e-17 Score=116.98 Aligned_cols=109 Identities=16% Similarity=0.142 Sum_probs=84.5
Q ss_pred EEEEEEeCCCcc----ccCCccccccc---cCcEEEEEEeCCCh-hhHHhHHHHHHHHHhhc---CCCCEEEEEeCCCCC
Q 029875 27 IRFYCWDTAGQE----KFGGLRDGYYI---HGQCAIIMFDVTAR-LTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVK 95 (186)
Q Consensus 27 ~~l~l~Dt~G~~----~~~~~~~~~~~---~ad~vilv~D~~~~-~s~~~i~~~~~~~~~~~---~~~p~ilv~nK~Dl~ 95 (186)
..+.||||||+. .+..+...+++ .+|++++|+|++++ .+++.+..|.+.+.... .+.|+++|+||+|+.
T Consensus 48 ~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~ 127 (170)
T cd01898 48 RSFVVADIPGLIEGASEGKGLGHRFLRHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLL 127 (170)
T ss_pred CeEEEEecCcccCcccccCCchHHHHHHHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcC
Confidence 588999999974 22334444444 59999999999999 78999999998887764 368999999999997
Q ss_pred CcccChH-HHHHHHH-cCCcEEEeccCCCCCchHHHHHHHHH
Q 029875 96 NRQVKAK-QVTFHRK-KNLQYYEISAKSNYNFEKPFLYLARK 135 (186)
Q Consensus 96 ~~~~~~~-~~~~~~~-~~~~~~~~Sa~~~~gi~~l~~~l~~~ 135 (186)
+.....+ ...+... .+.+++++||++|.|++++|+++.+.
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~ 169 (170)
T cd01898 128 DEEELFELLKELLKELWGKPVFPISALTGEGLDELLRKLAEL 169 (170)
T ss_pred CchhhHHHHHHHHhhCCCCCEEEEecCCCCCHHHHHHHHHhh
Confidence 5443333 3344444 36789999999999999999999865
No 141
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.71 E-value=4.4e-17 Score=122.01 Aligned_cols=118 Identities=12% Similarity=0.135 Sum_probs=87.2
Q ss_pred cccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEE
Q 029875 8 KATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVL 87 (186)
Q Consensus 8 ~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~il 87 (186)
.+|.|.++......++...+.+++|||||+++|..++..+++++|++++|||+++.. +.....|+..+.. .+.|+++
T Consensus 46 e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~--~~~p~ii 122 (194)
T cd01891 46 ERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEVERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALE--LGLKPIV 122 (194)
T ss_pred HHhcccccccceeEEEECCEEEEEEECCCcHHHHHHHHHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHH--cCCCEEE
Confidence 456788887777777778899999999999999999999999999999999998742 2333344444433 3789999
Q ss_pred EEeCCCCCCcccC---hHHHHHHHH-------cCCcEEEeccCCCCCchHH
Q 029875 88 CGNKVDVKNRQVK---AKQVTFHRK-------KNLQYYEISAKSNYNFEKP 128 (186)
Q Consensus 88 v~nK~Dl~~~~~~---~~~~~~~~~-------~~~~~~~~Sa~~~~gi~~l 128 (186)
|+||+|+.+.... .+...+... .+++++++||++|.|+.+.
T Consensus 123 v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Sa~~g~~~~~~ 173 (194)
T cd01891 123 VINKIDRPDARPEEVVDEVFDLFIELGATEEQLDFPVLYASAKNGWASLNL 173 (194)
T ss_pred EEECCCCCCCCHHHHHHHHHHHHHHhCCccccCccCEEEeehhcccccccc
Confidence 9999999643221 222333322 2578999999999887433
No 142
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.71 E-value=1.4e-17 Score=119.12 Aligned_cols=130 Identities=21% Similarity=0.335 Sum_probs=108.5
Q ss_pred cccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhh--cCCC
Q 029875 6 WGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENI 83 (186)
Q Consensus 6 ~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~--~~~~ 83 (186)
.-.||+|.+...+.+ ....+.+||.+||+..+++|..||..++++|+++|+++++-|+.....++.+... ..+.
T Consensus 52 ki~~tvgLnig~i~v----~~~~l~fwdlgGQe~lrSlw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~ 127 (197)
T KOG0076|consen 52 KITPTVGLNIGTIEV----CNAPLSFWDLGGQESLRSLWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGA 127 (197)
T ss_pred Heecccceeecceee----ccceeEEEEcCChHHHHHHHHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCC
Confidence 457999999998777 4778999999999999999999999999999999999999999887777666553 2689
Q ss_pred CEEEEEeCCCCCCcccChHHH---HHHHH---cCCcEEEeccCCCCCchHHHHHHHHHHhCC
Q 029875 84 PIVLCGNKVDVKNRQVKAKQV---TFHRK---KNLQYYEISAKSNYNFEKPFLYLARKLAGD 139 (186)
Q Consensus 84 p~ilv~nK~Dl~~~~~~~~~~---~~~~~---~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 139 (186)
|+++.+||.|+.+.....+.. ..+.. ...++..|||.+|+||++...|+++.+..+
T Consensus 128 p~L~lankqd~q~~~~~~El~~~~~~~e~~~~rd~~~~pvSal~gegv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 128 PVLVLANKQDLQNAMEAAELDGVFGLAELIPRRDNPFQPVSALTGEGVKEGIEWLVKKLEKN 189 (197)
T ss_pred chhhhcchhhhhhhhhHHHHHHHhhhhhhcCCccCccccchhhhcccHHHHHHHHHHHHhhc
Confidence 999999999998765444432 22222 236799999999999999999999998766
No 143
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.71 E-value=4.2e-16 Score=109.93 Aligned_cols=128 Identities=34% Similarity=0.548 Sum_probs=103.4
Q ss_pred ccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHH--HHHHhhcCC
Q 029875 5 VWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWH--RDLCRVCEN 82 (186)
Q Consensus 5 ~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~--~~~~~~~~~ 82 (186)
..+.+|. .++....+........+.+||++|+..+...+..+++.++++++|+|+++..++.....|. ........+
T Consensus 24 ~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (157)
T cd00882 24 EEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVTDRESFENVKEWLLLILINKEGEN 102 (157)
T ss_pred cccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCC
Confidence 4566777 8888888887788999999999999998888888999999999999999999988887773 222233468
Q ss_pred CCEEEEEeCCCCCCcccChH---HHHHHHHcCCcEEEeccCCCCCchHHHHHHH
Q 029875 83 IPIVLCGNKVDVKNRQVKAK---QVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 133 (186)
Q Consensus 83 ~p~ilv~nK~Dl~~~~~~~~---~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 133 (186)
.|+++++||+|+........ ........+.+++++|++++.|++++++++.
T Consensus 103 ~~~ivv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~ 156 (157)
T cd00882 103 IPIILVGNKIDLPEERVVSEEELAEQLAKELGVPYFETSAKTGENVEELFEELA 156 (157)
T ss_pred CcEEEEEeccccccccchHHHHHHHHHHhhcCCcEEEEecCCCCChHHHHHHHh
Confidence 99999999999975433332 2234455568999999999999999999876
No 144
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.71 E-value=3.8e-16 Score=111.33 Aligned_cols=131 Identities=22% Similarity=0.348 Sum_probs=106.1
Q ss_pred CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCCh-hhHHhHH-HHHHHHHhhc
Q 029875 3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTAR-LTYKNVP-TWHRDLCRVC 80 (186)
Q Consensus 3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~-~s~~~i~-~~~~~~~~~~ 80 (186)
+...+.||++.++....+..++..+.+.+|||||+..+..++..+.+.+++++.++|.... .++.... .|...+....
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~ 105 (161)
T TIGR00231 26 FITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHA 105 (161)
T ss_pred CcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhc
Confidence 4567889999999988888888789999999999999999999999999999999999887 6776654 6777776665
Q ss_pred C-CCCEEEEEeCCCCCCcccChHHH-HHHHHcCCcEEEeccCCCCCchHHHHHHH
Q 029875 81 E-NIPIVLCGNKVDVKNRQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLA 133 (186)
Q Consensus 81 ~-~~p~ilv~nK~Dl~~~~~~~~~~-~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 133 (186)
. +.|+++++||+|+.......... .+......+++++||++|.|+.++|+++.
T Consensus 106 ~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~gv~~~~~~l~ 160 (161)
T TIGR00231 106 ESNVPIILVGNKIDLRDAKLKTHVAFLFAKLNGEPIIPLSAETGKNIDSAFKIVE 160 (161)
T ss_pred ccCCcEEEEEEcccCCcchhhHHHHHHHhhccCCceEEeecCCCCCHHHHHHHhh
Confidence 4 88999999999997644333333 33333456899999999999999998863
No 145
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.70 E-value=3.5e-16 Score=112.58 Aligned_cols=123 Identities=13% Similarity=0.082 Sum_probs=91.2
Q ss_pred ccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCc------cccccc--cCcEEEEEEeCCChhhHHhHHHHHHHHHh
Q 029875 7 GKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL------RDGYYI--HGQCAIIMFDVTARLTYKNVPTWHRDLCR 78 (186)
Q Consensus 7 ~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~------~~~~~~--~ad~vilv~D~~~~~s~~~i~~~~~~~~~ 78 (186)
+.|++..++....+.+++ ..+.+|||||+..+..+ +..++. ++|++|+|+|+++..+.. .|...+..
T Consensus 25 ~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~---~~~~~~~~ 99 (158)
T cd01879 25 NWPGVTVEKKEGRFKLGG--KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLIVNVVDATNLERNL---YLTLQLLE 99 (158)
T ss_pred CCCCcccccceEEEeeCC--eEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEEEEEeeCCcchhHH---HHHHHHHH
Confidence 345556666666666665 47889999999887653 455664 999999999999865432 34444443
Q ss_pred hcCCCCEEEEEeCCCCCCcc-cChHHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHH
Q 029875 79 VCENIPIVLCGNKVDVKNRQ-VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 136 (186)
Q Consensus 79 ~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 136 (186)
.+.|+++|+||+|+.+.. .......++..++.+++++||++|.|+.+++..+.+.+
T Consensus 100 --~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~iSa~~~~~~~~l~~~l~~~~ 156 (158)
T cd01879 100 --LGLPVVVALNMIDEAEKRGIKIDLDKLSELLGVPVVPTSARKGEGIDELKDAIAELA 156 (158)
T ss_pred --cCCCEEEEEehhhhcccccchhhHHHHHHhhCCCeEEEEccCCCCHHHHHHHHHHHh
Confidence 378999999999997542 33334466677788999999999999999999998763
No 146
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.70 E-value=3.8e-17 Score=116.12 Aligned_cols=109 Identities=18% Similarity=0.170 Sum_probs=80.6
Q ss_pred cccccceEEEEEEEEEECCeEEEEEEEeCCCcc-----ccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc
Q 029875 6 WGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQE-----KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC 80 (186)
Q Consensus 6 ~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~-----~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~ 80 (186)
.|.+|+++++.. .+|||||+. .|..+.. .+++||++|+|||++++.++.. ..|....
T Consensus 26 ~~~~t~~~~~~~------------~~iDt~G~~~~~~~~~~~~~~-~~~~ad~vilv~d~~~~~s~~~-~~~~~~~---- 87 (142)
T TIGR02528 26 LYKKTQAVEYND------------GAIDTPGEYVENRRLYSALIV-TAADADVIALVQSATDPESRFP-PGFASIF---- 87 (142)
T ss_pred ccccceeEEEcC------------eeecCchhhhhhHHHHHHHHH-HhhcCCEEEEEecCCCCCcCCC-hhHHHhc----
Confidence 467787766542 579999972 3343333 4789999999999999998865 3454432
Q ss_pred CCCCEEEEEeCCCCCCcccChH-HHHHHHHcCC-cEEEeccCCCCCchHHHHHHH
Q 029875 81 ENIPIVLCGNKVDVKNRQVKAK-QVTFHRKKNL-QYYEISAKSNYNFEKPFLYLA 133 (186)
Q Consensus 81 ~~~p~ilv~nK~Dl~~~~~~~~-~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~ 133 (186)
..|+++|+||+|+.++....+ ..++++..+. +++++||++|.|++++|.++.
T Consensus 88 -~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 141 (142)
T TIGR02528 88 -VKPVIGLVTKIDLAEADVDIERAKELLETAGAEPIFEISSVDEQGLEALVDYLN 141 (142)
T ss_pred -cCCeEEEEEeeccCCcccCHHHHHHHHHHcCCCcEEEEecCCCCCHHHHHHHHh
Confidence 249999999999975433333 3466666665 799999999999999999874
No 147
>PRK15494 era GTPase Era; Provisional
Probab=99.68 E-value=7.8e-16 Score=124.55 Aligned_cols=152 Identities=16% Similarity=0.142 Sum_probs=105.6
Q ss_pred ccccceEEEEEEEEEECCeEEEEEEEeCCCcc-ccCCcc-------ccccccCcEEEEEEeCCChhhHHhHH-HHHHHHH
Q 029875 7 GKATIGVEVHPLDFFTNCGKIRFYCWDTAGQE-KFGGLR-------DGYYIHGQCAIIMFDVTARLTYKNVP-TWHRDLC 77 (186)
Q Consensus 7 ~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~-~~~~~~-------~~~~~~ad~vilv~D~~~~~s~~~i~-~~~~~~~ 77 (186)
..+|.+ +....+..++ .++.||||||+. .+..+. ...+++||++|+|+|.++ +|.... .|++.+.
T Consensus 84 ~~tTr~--~~~~~~~~~~--~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l~~aDvil~VvD~~~--s~~~~~~~il~~l~ 157 (339)
T PRK15494 84 VQTTRS--IITGIITLKD--TQVILYDTPGIFEPKGSLEKAMVRCAWSSLHSADLVLLIIDSLK--SFDDITHNILDKLR 157 (339)
T ss_pred CCCccC--cEEEEEEeCC--eEEEEEECCCcCCCcccHHHHHHHHHHHHhhhCCEEEEEEECCC--CCCHHHHHHHHHHH
Confidence 344543 2333344444 467999999984 333322 234779999999999876 455543 4555554
Q ss_pred hhcCCCCEEEEEeCCCCCCcccChHHHHHHHHcC--CcEEEeccCCCCCchHHHHHHHHHHhCCCCcccccCCCCCCCcc
Q 029875 78 RVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKN--LQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEV 155 (186)
Q Consensus 78 ~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~~~~~~~~~~~~~~~ 155 (186)
.. +.|.++|+||+|+.+.. ..+..+++...+ ..++++||++|.|++++|+++...+.+.+...........+.++
T Consensus 158 ~~--~~p~IlViNKiDl~~~~-~~~~~~~l~~~~~~~~i~~iSAktg~gv~eL~~~L~~~l~~~~~~~~~~~~td~~~~~ 234 (339)
T PRK15494 158 SL--NIVPIFLLNKIDIESKY-LNDIKAFLTENHPDSLLFPISALSGKNIDGLLEYITSKAKISPWLYAEDDITDLPMRF 234 (339)
T ss_pred hc--CCCEEEEEEhhcCcccc-HHHHHHHHHhcCCCcEEEEEeccCccCHHHHHHHHHHhCCCCCCCCCCCCCCCCCHHH
Confidence 43 56888999999996532 223334444443 57999999999999999999999999998888888887778787
Q ss_pred ccCHHHHHHHHH
Q 029875 156 QIDLAAQQQHEA 167 (186)
Q Consensus 156 ~~~~~~~~~~~~ 167 (186)
...+..+++.=.
T Consensus 235 ~~~eiiRe~~~~ 246 (339)
T PRK15494 235 IAAEITREQLFL 246 (339)
T ss_pred HHHHHHHHHHHh
Confidence 777777766533
No 148
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.68 E-value=2.3e-16 Score=109.70 Aligned_cols=130 Identities=19% Similarity=0.284 Sum_probs=100.5
Q ss_pred ccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhh--cCC
Q 029875 5 VWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CEN 82 (186)
Q Consensus 5 ~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~--~~~ 82 (186)
....||+|++.....+ ++..+++||.+|+-..+..|+-||.+.+++|+|+|.+|++.......-+-.+.+. ..+
T Consensus 44 vttkPtigfnve~v~y----KNLk~~vwdLggqtSirPyWRcYy~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~ 119 (182)
T KOG0072|consen 44 VTTKPTIGFNVETVPY----KNLKFQVWDLGGQTSIRPYWRCYYADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQH 119 (182)
T ss_pred cccCCCCCcCcccccc----ccccceeeEccCcccccHHHHHHhcccceEEEEEeccchhhhhhhHHHHHHHhccHhhcC
Confidence 3468999999886665 8899999999999999999999999999999999999987544333322222222 245
Q ss_pred CCEEEEEeCCCCCCcccChHHHH-----HHHHcCCcEEEeccCCCCCchHHHHHHHHHHhC
Q 029875 83 IPIVLCGNKVDVKNRQVKAKQVT-----FHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG 138 (186)
Q Consensus 83 ~p~ilv~nK~Dl~~~~~~~~~~~-----~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 138 (186)
..+++++||.|.+.+....+... ..+..-+.++++||.+|.|++.+++||.+.+.+
T Consensus 120 a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk~r~~~Iv~tSA~kg~Gld~~~DWL~~~l~~ 180 (182)
T KOG0072|consen 120 AKLLVFANKQDYSGALTRSEVLKMLGLQKLKDRIWQIVKTSAVKGEGLDPAMDWLQRPLKS 180 (182)
T ss_pred ceEEEEeccccchhhhhHHHHHHHhChHHHhhheeEEEeeccccccCCcHHHHHHHHHHhc
Confidence 78999999999987655444321 112223679999999999999999999988754
No 149
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=99.66 E-value=2.3e-15 Score=105.78 Aligned_cols=137 Identities=19% Similarity=0.326 Sum_probs=110.3
Q ss_pred CCccccccceEEEEEEEEEE-CCeEEEEEEEeCCCcccc-CCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc
Q 029875 3 VSVWGKATIGVEVHPLDFFT-NCGKIRFYCWDTAGQEKF-GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC 80 (186)
Q Consensus 3 ~~~~~~~Tig~~~~~~~~~~-~~~~~~l~l~Dt~G~~~~-~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~ 80 (186)
.-+++.|||. |++...+.. .|-+-++.|+||+|...+ ..+-+.|+.-+|++++||+..++.||+.+.-....|.+..
T Consensus 36 ~~~e~~pTiE-DiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aDafVLVYs~~d~eSf~rv~llKk~Idk~K 114 (198)
T KOG3883|consen 36 PGTELHPTIE-DIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFADAFVLVYSPMDPESFQRVELLKKEIDKHK 114 (198)
T ss_pred CCCccccchh-hheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCceEEEEecCCCHHHHHHHHHHHHHHhhcc
Confidence 4578999996 555555554 556678999999999888 6788999999999999999999999987644333333332
Q ss_pred --CCCCEEEEEeCCCCCC-cccChH-HHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCCC
Q 029875 81 --ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDP 140 (186)
Q Consensus 81 --~~~p~ilv~nK~Dl~~-~~~~~~-~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~ 140 (186)
..+|+++.+||+|+.+ +.+..+ +..||+.-.+..++++|.+...+-+.|..++..+.+..
T Consensus 115 dKKEvpiVVLaN~rdr~~p~~vd~d~A~~Wa~rEkvkl~eVta~dR~sL~epf~~l~~rl~~pq 178 (198)
T KOG3883|consen 115 DKKEVPIVVLANKRDRAEPREVDMDVAQIWAKREKVKLWEVTAMDRPSLYEPFTYLASRLHQPQ 178 (198)
T ss_pred ccccccEEEEechhhcccchhcCHHHHHHHHhhhheeEEEEEeccchhhhhHHHHHHHhccCCc
Confidence 5799999999999975 444444 56899999999999999999999999999998887643
No 150
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.66 E-value=1.1e-15 Score=123.27 Aligned_cols=113 Identities=18% Similarity=0.137 Sum_probs=87.0
Q ss_pred EEEEEEeCCCcccc----CCcccc---ccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc---CCCCEEEEEeCCCCCC
Q 029875 27 IRFYCWDTAGQEKF----GGLRDG---YYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVKN 96 (186)
Q Consensus 27 ~~l~l~Dt~G~~~~----~~~~~~---~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~---~~~p~ilv~nK~Dl~~ 96 (186)
..+.+|||||...- ..+... .++.++++|+|+|+++.++++.+..|..++..+. .+.|+++|+||+|+.+
T Consensus 206 ~~~~i~D~PGli~ga~~~~gLg~~flrhie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~ 285 (335)
T PRK12299 206 KSFVIADIPGLIEGASEGAGLGHRFLKHIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLD 285 (335)
T ss_pred cEEEEEeCCCccCCCCccccHHHHHHHHhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCC
Confidence 46889999997431 123333 3457999999999998888999999999988764 3689999999999975
Q ss_pred cc-cChH-HHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCC
Q 029875 97 RQ-VKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD 139 (186)
Q Consensus 97 ~~-~~~~-~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 139 (186)
.. ...+ ...++...+.+++++||+++.||+++++++.+.+.+.
T Consensus 286 ~~~~~~~~~~~~~~~~~~~i~~iSAktg~GI~eL~~~L~~~l~~~ 330 (335)
T PRK12299 286 EEEEREKRAALELAALGGPVFLISAVTGEGLDELLRALWELLEEA 330 (335)
T ss_pred chhHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHHHHhh
Confidence 33 2222 2234455668899999999999999999999888654
No 151
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.65 E-value=1.1e-15 Score=115.16 Aligned_cols=123 Identities=17% Similarity=0.087 Sum_probs=86.9
Q ss_pred ccccceEEEEEEEEEECCeEEEEEEEeCCCcccc---------CCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHH
Q 029875 7 GKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF---------GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLC 77 (186)
Q Consensus 7 ~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~---------~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~ 77 (186)
+.+|+...... +.+.+. ..+.+|||||.... ...+ ..+.++|++++|+|++++.++..+..|.+.+.
T Consensus 72 ~~~t~~~~~~~--~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~~~-~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~ 147 (204)
T cd01878 72 LFATLDPTTRR--LRLPDG-REVLLTDTVGFIRDLPHQLVEAFRSTL-EEVAEADLLLHVVDASDPDYEEQIETVEKVLK 147 (204)
T ss_pred cceeccceeEE--EEecCC-ceEEEeCCCccccCCCHHHHHHHHHHH-HHHhcCCeEEEEEECCCCChhhHHHHHHHHHH
Confidence 45565544333 333332 37889999997332 1111 13568999999999999888887777777766
Q ss_pred hhc-CCCCEEEEEeCCCCCCcccChHHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHH
Q 029875 78 RVC-ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 136 (186)
Q Consensus 78 ~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 136 (186)
... .+.|+++|+||+|+.+..... .+....+.+++++||++|.|+++++.+|...+
T Consensus 148 ~~~~~~~~viiV~NK~Dl~~~~~~~---~~~~~~~~~~~~~Sa~~~~gi~~l~~~L~~~~ 204 (204)
T cd01878 148 ELGAEDIPMILVLNKIDLLDDEELE---ERLEAGRPDAVFISAKTGEGLDELLEAIEELL 204 (204)
T ss_pred HcCcCCCCEEEEEEccccCChHHHH---HHhhcCCCceEEEEcCCCCCHHHHHHHHHhhC
Confidence 543 468999999999996533211 33444567899999999999999999998754
No 152
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.64 E-value=9.5e-16 Score=132.02 Aligned_cols=113 Identities=13% Similarity=0.142 Sum_probs=88.4
Q ss_pred CCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCcccChH
Q 029875 23 NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK 102 (186)
Q Consensus 23 ~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~ 102 (186)
++..+.+.||||||+..|...+..+++.+|++|+|+|+++....+....|..... .+.|+++|+||+|+.+......
T Consensus 70 dg~~~~lnLiDTPGh~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~---~~lpiIvViNKiDl~~a~~~~v 146 (600)
T PRK05433 70 DGETYILNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE---NDLEIIPVLNKIDLPAADPERV 146 (600)
T ss_pred CCCcEEEEEEECCCcHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH---CCCCEEEEEECCCCCcccHHHH
Confidence 5668999999999999999889999999999999999998766665555544322 3789999999999865332221
Q ss_pred HHHHHHHcCCc---EEEeccCCCCCchHHHHHHHHHHhC
Q 029875 103 QVTFHRKKNLQ---YYEISAKSNYNFEKPFLYLARKLAG 138 (186)
Q Consensus 103 ~~~~~~~~~~~---~~~~Sa~~~~gi~~l~~~l~~~i~~ 138 (186)
..++...+++. ++.+||++|.|+.++++++.+.+..
T Consensus 147 ~~ei~~~lg~~~~~vi~iSAktG~GI~~Ll~~I~~~lp~ 185 (600)
T PRK05433 147 KQEIEDVIGIDASDAVLVSAKTGIGIEEVLEAIVERIPP 185 (600)
T ss_pred HHHHHHHhCCCcceEEEEecCCCCCHHHHHHHHHHhCcc
Confidence 22444445553 8999999999999999999987753
No 153
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.64 E-value=2.1e-15 Score=109.22 Aligned_cols=123 Identities=19% Similarity=0.179 Sum_probs=101.0
Q ss_pred cccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEE
Q 029875 8 KATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVL 87 (186)
Q Consensus 8 ~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~il 87 (186)
..|++.||.+.++. ....++|+|||||++|..+|+.+.+++.+.|+++|.+.+..+ .....+..+.... ..|++|
T Consensus 52 ~tTva~D~g~~~~~---~~~~v~LfgtPGq~RF~fm~~~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~~~-~ip~vV 126 (187)
T COG2229 52 PTTVAMDFGSIELD---EDTGVHLFGTPGQERFKFMWEILSRGAVGAIVLVDSSRPITF-HAEEIIDFLTSRN-PIPVVV 126 (187)
T ss_pred ceeEeecccceEEc---CcceEEEecCCCcHHHHHHHHHHhCCcceEEEEEecCCCcch-HHHHHHHHHhhcc-CCCEEE
Confidence 47899999987764 446778899999999999999999999999999999999888 3334444444432 299999
Q ss_pred EEeCCCCCCcccChHHHHHHHHc--CCcEEEeccCCCCCchHHHHHHHHH
Q 029875 88 CGNKVDVKNRQVKAKQVTFHRKK--NLQYYEISAKSNYNFEKPFLYLARK 135 (186)
Q Consensus 88 v~nK~Dl~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~gi~~l~~~l~~~ 135 (186)
++||.||.+....++..++.... ..+.++++|..+.|..+.+..+...
T Consensus 127 a~NK~DL~~a~ppe~i~e~l~~~~~~~~vi~~~a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 127 AINKQDLFDALPPEKIREALKLELLSVPVIEIDATEGEGARDQLDVLLLK 176 (187)
T ss_pred EeeccccCCCCCHHHHHHHHHhccCCCceeeeecccchhHHHHHHHHHhh
Confidence 99999999887777766555433 7899999999999999999888866
No 154
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.62 E-value=6.5e-15 Score=107.07 Aligned_cols=110 Identities=16% Similarity=0.132 Sum_probs=78.5
Q ss_pred eEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCcccCh---
Q 029875 25 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA--- 101 (186)
Q Consensus 25 ~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~--- 101 (186)
....+.+|||||+..|..++..++..+|++++|+|+++....+.. ..+..+.. .+.|+++|+||+|+.......
T Consensus 48 ~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~-~~~~~~~~--~~~p~ivv~NK~Dl~~~~~~~~~~ 124 (168)
T cd01887 48 KIPGITFIDTPGHEAFTNMRARGASLTDIAILVVAADDGVMPQTI-EAIKLAKA--ANVPFIVALNKIDKPNANPERVKN 124 (168)
T ss_pred CcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEEECCCCccHHHH-HHHHHHHH--cCCCEEEEEEceecccccHHHHHH
Confidence 467889999999999998888899999999999999984322211 11222222 478999999999987432111
Q ss_pred HHHHHHH------HcCCcEEEeccCCCCCchHHHHHHHHHHh
Q 029875 102 KQVTFHR------KKNLQYYEISAKSNYNFEKPFLYLARKLA 137 (186)
Q Consensus 102 ~~~~~~~------~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 137 (186)
....+.. ...++++++||++|.|+.++++++.+...
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 166 (168)
T cd01887 125 ELSELGLQGEDEWGGDVQIVPTSAKTGEGIDDLLEAILLLAE 166 (168)
T ss_pred HHHHhhccccccccCcCcEEEeecccCCCHHHHHHHHHHhhh
Confidence 1111111 11357999999999999999999987654
No 155
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.62 E-value=3.1e-15 Score=111.81 Aligned_cols=127 Identities=13% Similarity=0.058 Sum_probs=84.6
Q ss_pred cccceEEEEEEEEE----------ECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHH
Q 029875 8 KATIGVEVHPLDFF----------TNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLC 77 (186)
Q Consensus 8 ~~Tig~~~~~~~~~----------~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~ 77 (186)
.+|++..+....+. ..+..+.+.+|||||+..+........+.+|++++|+|+++.........|. +.
T Consensus 39 g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~--~~ 116 (192)
T cd01889 39 GITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHASLIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV--IG 116 (192)
T ss_pred CCeeeecceEEEecccccccccccccccCceEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH--HH
Confidence 36777777666654 1244789999999998665333333456789999999999854444332222 11
Q ss_pred hhcCCCCEEEEEeCCCCCCcccC----hHHHH-HHH------HcCCcEEEeccCCCCCchHHHHHHHHHHh
Q 029875 78 RVCENIPIVLCGNKVDVKNRQVK----AKQVT-FHR------KKNLQYYEISAKSNYNFEKPFLYLARKLA 137 (186)
Q Consensus 78 ~~~~~~p~ilv~nK~Dl~~~~~~----~~~~~-~~~------~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 137 (186)
.. .+.|+++++||+|+...... .+..+ +.. ..+++++.+||++|.|++++++++..++.
T Consensus 117 ~~-~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~ 186 (192)
T cd01889 117 EI-LCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEKTRFKNSPIIPVSAKPGGGEAELGKDLNNLIV 186 (192)
T ss_pred HH-cCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHhcCcCCCCEEEEeccCCCCHHHHHHHHHhccc
Confidence 21 26799999999998642211 11111 111 13578999999999999999999998774
No 156
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.62 E-value=4.8e-15 Score=116.51 Aligned_cols=135 Identities=15% Similarity=0.035 Sum_probs=96.0
Q ss_pred EEEEEEeCCCccccC-C-------ccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCcc
Q 029875 27 IRFYCWDTAGQEKFG-G-------LRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ 98 (186)
Q Consensus 27 ~~l~l~Dt~G~~~~~-~-------~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 98 (186)
.++.||||||..... . ....++++||++++|+|+++..+.+ ..++..+.. .+.|+++|+||+|+.+..
T Consensus 48 ~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~aDvvl~VvD~~~~~~~~--~~i~~~l~~--~~~p~ilV~NK~Dl~~~~ 123 (270)
T TIGR00436 48 SQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGVDLILFVVDSDQWNGDG--EFVLTKLQN--LKRPVVLTRNKLDNKFKD 123 (270)
T ss_pred cEEEEEECcCCCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCCchH--HHHHHHHHh--cCCCEEEEEECeeCCCHH
Confidence 578999999975431 1 1345678999999999999876664 334444443 368999999999996432
Q ss_pred cCh-HHHHHHHHcCC-cEEEeccCCCCCchHHHHHHHHHHhCCCCcccccCCCCCCCccccCHHHHHHH
Q 029875 99 VKA-KQVTFHRKKNL-QYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQH 165 (186)
Q Consensus 99 ~~~-~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (186)
... ....++...+. +++++||++|.|++++++.+.+.+...+...........+..+...+..+++.
T Consensus 124 ~~~~~~~~~~~~~~~~~v~~iSA~~g~gi~~L~~~l~~~l~~~~~~~~~~~~t~~~~~~~~~e~ire~~ 192 (270)
T TIGR00436 124 KLLPLIDKYAILEDFKDIVPISALTGDNTSFLAAFIEVHLPEGPFRYPEDYVTDQPDRFKISEIIREKI 192 (270)
T ss_pred HHHHHHHHHHhhcCCCceEEEecCCCCCHHHHHHHHHHhCCCCCCCCCCcccCCCCHHHHHHHHHHHHH
Confidence 211 22244444444 79999999999999999999999988776666666666666666666666554
No 157
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.61 E-value=3.7e-15 Score=109.07 Aligned_cols=110 Identities=14% Similarity=0.124 Sum_probs=80.6
Q ss_pred EEEEEEEeCCCccc----cCCcc---ccccccCcEEEEEEeCCCh------hhHHhHHHHHHHHHhhc--------CCCC
Q 029875 26 KIRFYCWDTAGQEK----FGGLR---DGYYIHGQCAIIMFDVTAR------LTYKNVPTWHRDLCRVC--------ENIP 84 (186)
Q Consensus 26 ~~~l~l~Dt~G~~~----~~~~~---~~~~~~ad~vilv~D~~~~------~s~~~i~~~~~~~~~~~--------~~~p 84 (186)
...+.+|||||... ...++ ..++++++++++|+|+++. .++.....|...+.... .+.|
T Consensus 43 ~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 122 (176)
T cd01881 43 GARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKP 122 (176)
T ss_pred CCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCC
Confidence 45678999999743 22232 2346789999999999988 57777777777776542 3689
Q ss_pred EEEEEeCCCCCCcccChHH--HHHHHHcCCcEEEeccCCCCCchHHHHHHHHH
Q 029875 85 IVLCGNKVDVKNRQVKAKQ--VTFHRKKNLQYYEISAKSNYNFEKPFLYLARK 135 (186)
Q Consensus 85 ~ilv~nK~Dl~~~~~~~~~--~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 135 (186)
+++|+||+|+......... .......+.+++.+||++|.|++++++++...
T Consensus 123 ~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 123 VIYVLNKIDLDDAEELEEELVRELALEEGAEVVPISAKTEEGLDELIRAIYEL 175 (176)
T ss_pred eEEEEEchhcCchhHHHHHHHHHHhcCCCCCEEEEehhhhcCHHHHHHHHHhh
Confidence 9999999999753322221 23333445789999999999999999998764
No 158
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.61 E-value=9.3e-15 Score=117.67 Aligned_cols=111 Identities=16% Similarity=0.205 Sum_probs=84.8
Q ss_pred EEEEEEEeCCCcccc----CCccccccc---cCcEEEEEEeCCCh---hhHHhHHHHHHHHHhhc---CCCCEEEEEeCC
Q 029875 26 KIRFYCWDTAGQEKF----GGLRDGYYI---HGQCAIIMFDVTAR---LTYKNVPTWHRDLCRVC---ENIPIVLCGNKV 92 (186)
Q Consensus 26 ~~~l~l~Dt~G~~~~----~~~~~~~~~---~ad~vilv~D~~~~---~s~~~i~~~~~~~~~~~---~~~p~ilv~nK~ 92 (186)
...++||||||+... ..+...+++ .++++|+|+|+++. ++++++..|.+++..+. .+.|++||+||+
T Consensus 204 ~~~~~i~D~PGli~~a~~~~gLg~~flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~ 283 (329)
T TIGR02729 204 GRSFVIADIPGLIEGASEGAGLGHRFLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKI 283 (329)
T ss_pred ceEEEEEeCCCcccCCcccccHHHHHHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCc
Confidence 367899999997532 234444544 69999999999986 67888888888777653 478999999999
Q ss_pred CCCCcccChH-HHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHH
Q 029875 93 DVKNRQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 136 (186)
Q Consensus 93 Dl~~~~~~~~-~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 136 (186)
|+.+.....+ ...++..++.+++++||+++.|+++++.++.+.+
T Consensus 284 DL~~~~~~~~~~~~l~~~~~~~vi~iSAktg~GI~eL~~~I~~~l 328 (329)
T TIGR02729 284 DLLDEEELAELLKELKKALGKPVFPISALTGEGLDELLYALAELL 328 (329)
T ss_pred cCCChHHHHHHHHHHHHHcCCcEEEEEccCCcCHHHHHHHHHHHh
Confidence 9975432222 2345556678899999999999999999998765
No 159
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.60 E-value=1.7e-14 Score=120.25 Aligned_cols=121 Identities=23% Similarity=0.187 Sum_probs=93.5
Q ss_pred cccceEEEEEEEEEECCeEEEEEEEeCCCccccCCc--------cccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhh
Q 029875 8 KATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL--------RDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV 79 (186)
Q Consensus 8 ~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~--------~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~ 79 (186)
.|+...++....+.+++.. +.+|||||+..+... ...++++||++++|||++++.+++.. |+..+..
T Consensus 234 ~pgtTrd~~~~~i~~~g~~--v~l~DTaG~~~~~~~ie~~gi~~~~~~~~~aD~il~V~D~s~~~s~~~~--~l~~~~~- 308 (442)
T TIGR00450 234 IKGTTRDVVEGDFELNGIL--IKLLDTAGIREHADFVERLGIEKSFKAIKQADLVIYVLDASQPLTKDDF--LIIDLNK- 308 (442)
T ss_pred CCCcEEEEEEEEEEECCEE--EEEeeCCCcccchhHHHHHHHHHHHHHHhhCCEEEEEEECCCCCChhHH--HHHHHhh-
Confidence 3555678888888887654 579999998765432 24578899999999999998887764 7666543
Q ss_pred cCCCCEEEEEeCCCCCCcccChHHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCC
Q 029875 80 CENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD 139 (186)
Q Consensus 80 ~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 139 (186)
.+.|+++|+||+|+... +...+++.++.+++.+||++ .||+++|+.+.+.+.+.
T Consensus 309 -~~~piIlV~NK~Dl~~~----~~~~~~~~~~~~~~~vSak~-~gI~~~~~~L~~~i~~~ 362 (442)
T TIGR00450 309 -SKKPFILVLNKIDLKIN----SLEFFVSSKVLNSSNLSAKQ-LKIKALVDLLTQKINAF 362 (442)
T ss_pred -CCCCEEEEEECccCCCc----chhhhhhhcCCceEEEEEec-CCHHHHHHHHHHHHHHH
Confidence 37899999999999643 22344566678899999998 69999999999988754
No 160
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.60 E-value=1.8e-14 Score=103.36 Aligned_cols=116 Identities=16% Similarity=0.056 Sum_probs=80.0
Q ss_pred EEEEEEEEEECCeEEEEEEEeCCCccccCC--------ccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCC
Q 029875 13 VEVHPLDFFTNCGKIRFYCWDTAGQEKFGG--------LRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP 84 (186)
Q Consensus 13 ~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~--------~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p 84 (186)
.+........++ ..+.+|||||...+.. .+...++++|++++|+|+++..+.... .+.+.+.. .+.|
T Consensus 33 ~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~-~~~~~~~~--~~~p 107 (157)
T cd01894 33 RDRIYGEAEWGG--REFILIDTGGIEPDDEGISKEIREQAELAIEEADVILFVVDGREGLTPADE-EIAKYLRK--SKKP 107 (157)
T ss_pred eCceeEEEEECC--eEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCEEEEEEeccccCCccHH-HHHHHHHh--cCCC
Confidence 334434444433 6788999999987654 334567889999999999876544332 22222222 2599
Q ss_pred EEEEEeCCCCCCcccChHHHHHHHHcCC-cEEEeccCCCCCchHHHHHHHHHH
Q 029875 85 IVLCGNKVDVKNRQVKAKQVTFHRKKNL-QYYEISAKSNYNFEKPFLYLARKL 136 (186)
Q Consensus 85 ~ilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~i 136 (186)
+++|+||+|+.+.... .......+. +++++||++|.|++++|+++++++
T Consensus 108 iiiv~nK~D~~~~~~~---~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~ 157 (157)
T cd01894 108 VILVVNKVDNIKEEDE---AAEFYSLGFGEPIPISAEHGRGIGDLLDAILELL 157 (157)
T ss_pred EEEEEECcccCChHHH---HHHHHhcCCCCeEEEecccCCCHHHHHHHHHhhC
Confidence 9999999999764322 222334455 789999999999999999998753
No 161
>PRK04213 GTP-binding protein; Provisional
Probab=99.59 E-value=3.1e-15 Score=112.42 Aligned_cols=106 Identities=22% Similarity=0.203 Sum_probs=72.5
Q ss_pred EEEEEeCCC-----------ccccCCccccccc----cCcEEEEEEeCCChhhHHhHHHH------------HHHHHhhc
Q 029875 28 RFYCWDTAG-----------QEKFGGLRDGYYI----HGQCAIIMFDVTARLTYKNVPTW------------HRDLCRVC 80 (186)
Q Consensus 28 ~l~l~Dt~G-----------~~~~~~~~~~~~~----~ad~vilv~D~~~~~s~~~i~~~------------~~~~~~~~ 80 (186)
.+.+||||| +++++.++..++. .++++++|+|.++...+. ..| +..+..
T Consensus 53 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~-- 128 (201)
T PRK04213 53 DFILTDLPGFGFMSGVPKEVQEKIKDEIVRYIEDNADRILAAVLVVDGKSFIEII--ERWEGRGEIPIDVEMFDFLRE-- 128 (201)
T ss_pred ceEEEeCCccccccccCHHHHHHHHHHHHHHHHhhhhhheEEEEEEeCccccccc--cccccCCCcHHHHHHHHHHHH--
Confidence 589999999 5666666666654 357888888886532210 122 222222
Q ss_pred CCCCEEEEEeCCCCCCcccChHHHHHHHHcCC---------cEEEeccCCCCCchHHHHHHHHHHhCC
Q 029875 81 ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL---------QYYEISAKSNYNFEKPFLYLARKLAGD 139 (186)
Q Consensus 81 ~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~---------~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 139 (186)
.+.|+++|+||+|+.+.. .....+++..++. +++++||++| ||+++|++|++.+...
T Consensus 129 ~~~p~iiv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~~ 194 (201)
T PRK04213 129 LGIPPIVAVNKMDKIKNR-DEVLDEIAERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHEA 194 (201)
T ss_pred cCCCeEEEEECccccCcH-HHHHHHHHHHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcCc
Confidence 479999999999996543 1223345555554 4899999999 9999999999987654
No 162
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.59 E-value=1.8e-14 Score=123.85 Aligned_cols=129 Identities=18% Similarity=0.057 Sum_probs=95.2
Q ss_pred CccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCC---hhhHHhHHHHHHHHHhhc
Q 029875 4 SVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTA---RLTYKNVPTWHRDLCRVC 80 (186)
Q Consensus 4 ~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~---~~s~~~i~~~~~~~~~~~ 80 (186)
+.++.+++.+++....+..++ ..+.||||||+++|.......+.++|++++|+|+++ +.+++.+. .+..
T Consensus 29 ~eE~~rGiTid~~~~~~~~~~--~~v~~iDtPGhe~f~~~~~~g~~~aD~aILVVDa~~G~~~qT~ehl~----il~~-- 100 (581)
T TIGR00475 29 PEEKKRGMTIDLGFAYFPLPD--YRLGFIDVPGHEKFISNAIAGGGGIDAALLVVDADEGVMTQTGEHLA----VLDL-- 100 (581)
T ss_pred hhHhcCCceEEeEEEEEEeCC--EEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCcHHHHHHHH----HHHH--
Confidence 345667777777766666655 788999999999998888888999999999999998 44444332 2222
Q ss_pred CCCC-EEEEEeCCCCCCccc----ChHHHHHHHHc----CCcEEEeccCCCCCchHHHHHHHHHHhCCC
Q 029875 81 ENIP-IVLCGNKVDVKNRQV----KAKQVTFHRKK----NLQYYEISAKSNYNFEKPFLYLARKLAGDP 140 (186)
Q Consensus 81 ~~~p-~ilv~nK~Dl~~~~~----~~~~~~~~~~~----~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~ 140 (186)
.+.| +++|+||+|+.+... ..+...+.... +++++++||++|.|+++++..+...+....
T Consensus 101 lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG~GI~eL~~~L~~l~~~~~ 169 (581)
T TIGR00475 101 LGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKTGQGIGELKKELKNLLESLD 169 (581)
T ss_pred cCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCCCCchhHHHHHHHHHHhCC
Confidence 2577 999999999975331 12223444443 478999999999999999999987775543
No 163
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.59 E-value=7.3e-15 Score=123.82 Aligned_cols=128 Identities=17% Similarity=0.101 Sum_probs=90.1
Q ss_pred cccccceEEEEEEEEEECCeEEEEEEEeCCCccc----------cCCcc-ccccccCcEEEEEEeCCChhhHHhHHHHHH
Q 029875 6 WGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEK----------FGGLR-DGYYIHGQCAIIMFDVTARLTYKNVPTWHR 74 (186)
Q Consensus 6 ~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~----------~~~~~-~~~~~~ad~vilv~D~~~~~s~~~i~~~~~ 74 (186)
...|+++.+.....+.+++..+ .||||||..+ |..++ ..++++||++|+|+|+++..+++++. ++.
T Consensus 240 s~~~gtT~d~~~~~~~~~~~~~--~l~DTaG~~~~~~~~~~~e~~~~~~~~~~i~~ad~vilV~Da~~~~s~~~~~-~~~ 316 (472)
T PRK03003 240 DDVAGTTVDPVDSLIELGGKTW--RFVDTAGLRRRVKQASGHEYYASLRTHAAIEAAEVAVVLIDASEPISEQDQR-VLS 316 (472)
T ss_pred cCCCCccCCcceEEEEECCEEE--EEEECCCccccccccchHHHHHHHHHHHHHhcCCEEEEEEeCCCCCCHHHHH-HHH
Confidence 3456666777777777777654 6899999643 22222 23578999999999999988887763 444
Q ss_pred HHHhhcCCCCEEEEEeCCCCCCcccChH----HH-HHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhC
Q 029875 75 DLCRVCENIPIVLCGNKVDVKNRQVKAK----QV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG 138 (186)
Q Consensus 75 ~~~~~~~~~p~ilv~nK~Dl~~~~~~~~----~~-~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 138 (186)
.+.. .+.|+++|+||+|+.+...... .. .+......+++++||++|.||+++|..+.+.+..
T Consensus 317 ~~~~--~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~SAk~g~gv~~lf~~i~~~~~~ 383 (472)
T PRK03003 317 MVIE--AGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNISAKTGRAVDKLVPALETALES 383 (472)
T ss_pred HHHH--cCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4443 4789999999999974221111 11 1122223689999999999999999999987753
No 164
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.57 E-value=2.9e-14 Score=120.20 Aligned_cols=124 Identities=20% Similarity=0.168 Sum_probs=86.2
Q ss_pred ccccceEEEEEEEEEECCeEEEEEEEeCCCccc--------cCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHh
Q 029875 7 GKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEK--------FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR 78 (186)
Q Consensus 7 ~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~--------~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~ 78 (186)
..|++..+.......+++. .+.+|||||++. +...+..+++.||++|+|||+++..++.. ..|...+..
T Consensus 68 ~~~gvT~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~aD~il~VvD~~~~~s~~~-~~i~~~l~~ 144 (472)
T PRK03003 68 DVPGVTRDRVSYDAEWNGR--RFTVVDTGGWEPDAKGLQASVAEQAEVAMRTADAVLFVVDATVGATATD-EAVARVLRR 144 (472)
T ss_pred CCCCCCEeeEEEEEEECCc--EEEEEeCCCcCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH
Confidence 4455555666556655555 477899999763 23345567889999999999998766543 234444443
Q ss_pred hcCCCCEEEEEeCCCCCCcccChHHHHHHHHcCC-cEEEeccCCCCCchHHHHHHHHHHhC
Q 029875 79 VCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL-QYYEISAKSNYNFEKPFLYLARKLAG 138 (186)
Q Consensus 79 ~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~i~~ 138 (186)
.+.|+++|+||+|+.... .+...+. ..++ ..+++||++|.|+.++|++++..+..
T Consensus 145 --~~~piilV~NK~Dl~~~~--~~~~~~~-~~g~~~~~~iSA~~g~gi~eL~~~i~~~l~~ 200 (472)
T PRK03003 145 --SGKPVILAANKVDDERGE--ADAAALW-SLGLGEPHPVSALHGRGVGDLLDAVLAALPE 200 (472)
T ss_pred --cCCCEEEEEECccCCccc--hhhHHHH-hcCCCCeEEEEcCCCCCcHHHHHHHHhhccc
Confidence 479999999999986432 1222221 2233 35799999999999999999998865
No 165
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.57 E-value=1.1e-14 Score=109.84 Aligned_cols=107 Identities=17% Similarity=0.173 Sum_probs=76.8
Q ss_pred EEEEEEeCCCccccCCccccccccCcEEEEEEeCCCh----hhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCcccC--
Q 029875 27 IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTAR----LTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK-- 100 (186)
Q Consensus 27 ~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~----~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~-- 100 (186)
.++.||||||++.|...+...++.+|++++|+|++++ .+++.+..| .. ....|+++|+||+|+.+....
T Consensus 83 ~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~----~~-~~~~~iiivvNK~Dl~~~~~~~~ 157 (203)
T cd01888 83 RHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAAL----EI-MGLKHIIIVQNKIDLVKEEQALE 157 (203)
T ss_pred cEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHH----HH-cCCCcEEEEEEchhccCHHHHHH
Confidence 6889999999998877777778889999999999973 233322222 11 123579999999999752211
Q ss_pred --hHHHHHHHHc---CCcEEEeccCCCCCchHHHHHHHHHHhC
Q 029875 101 --AKQVTFHRKK---NLQYYEISAKSNYNFEKPFLYLARKLAG 138 (186)
Q Consensus 101 --~~~~~~~~~~---~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 138 (186)
....++...+ +.+++.+||++|.|++++|+.+.+.+..
T Consensus 158 ~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~~ 200 (203)
T cd01888 158 NYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIPT 200 (203)
T ss_pred HHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCCC
Confidence 1122333322 5689999999999999999999987654
No 166
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.57 E-value=3.3e-14 Score=118.98 Aligned_cols=117 Identities=15% Similarity=0.107 Sum_probs=87.7
Q ss_pred ccceEEEEEEEEEECCeEEEEEEEeCCCccccCCc--------cccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc
Q 029875 9 ATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL--------RDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC 80 (186)
Q Consensus 9 ~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~--------~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~ 80 (186)
|....++....+.+++. .+.+|||||.+.+... ...++++||++++|+|++++.+++....|.. .
T Consensus 247 ~gtT~d~~~~~i~~~g~--~i~l~DT~G~~~~~~~ie~~gi~~~~~~~~~aD~il~VvD~s~~~s~~~~~~l~~-----~ 319 (449)
T PRK05291 247 AGTTRDVIEEHINLDGI--PLRLIDTAGIRETDDEVEKIGIERSREAIEEADLVLLVLDASEPLTEEDDEILEE-----L 319 (449)
T ss_pred CCcccccEEEEEEECCe--EEEEEeCCCCCCCccHHHHHHHHHHHHHHHhCCEEEEEecCCCCCChhHHHHHHh-----c
Confidence 33345666666766654 5789999998765432 2346889999999999999888776544443 3
Q ss_pred CCCCEEEEEeCCCCCCcccChHHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhC
Q 029875 81 ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG 138 (186)
Q Consensus 81 ~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 138 (186)
.+.|+++|+||+|+.+..... ...+.+++++||++|.|++++++++.+.+..
T Consensus 320 ~~~piiiV~NK~DL~~~~~~~------~~~~~~~i~iSAktg~GI~~L~~~L~~~l~~ 371 (449)
T PRK05291 320 KDKPVIVVLNKADLTGEIDLE------EENGKPVIRISAKTGEGIDELREAIKELAFG 371 (449)
T ss_pred CCCCcEEEEEhhhccccchhh------hccCCceEEEEeeCCCCHHHHHHHHHHHHhh
Confidence 578999999999996432111 3345689999999999999999999998864
No 167
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.57 E-value=2.9e-14 Score=115.75 Aligned_cols=120 Identities=16% Similarity=0.100 Sum_probs=83.1
Q ss_pred cccceEEEEEEEEEECCeEEEEEEEeCCCccc---------cCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHh
Q 029875 8 KATIGVEVHPLDFFTNCGKIRFYCWDTAGQEK---------FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR 78 (186)
Q Consensus 8 ~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~---------~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~ 78 (186)
-+|.. .....+.+.+ ...+.||||+|..+ |...+ ..+.+||++|+|+|++++.+++.+..|...+..
T Consensus 221 ~tT~d--~~~~~i~~~~-~~~i~l~DT~G~~~~l~~~lie~f~~tl-e~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~ 296 (351)
T TIGR03156 221 FATLD--PTTRRLDLPD-GGEVLLTDTVGFIRDLPHELVAAFRATL-EEVREADLLLHVVDASDPDREEQIEAVEKVLEE 296 (351)
T ss_pred ccccC--CEEEEEEeCC-CceEEEEecCcccccCCHHHHHHHHHHH-HHHHhCCEEEEEEECCCCchHHHHHHHHHHHHH
Confidence 35543 3444555532 24788999999722 22211 247899999999999999888877767666555
Q ss_pred hc-CCCCEEEEEeCCCCCCcccChHHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHH
Q 029875 79 VC-ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK 135 (186)
Q Consensus 79 ~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 135 (186)
.. .+.|+++|+||+|+.+.. ....+ .....+++.+||++|.|+++++..+.+.
T Consensus 297 l~~~~~piIlV~NK~Dl~~~~---~v~~~-~~~~~~~i~iSAktg~GI~eL~~~I~~~ 350 (351)
T TIGR03156 297 LGAEDIPQLLVYNKIDLLDEP---RIERL-EEGYPEAVFVSAKTGEGLDLLLEAIAER 350 (351)
T ss_pred hccCCCCEEEEEEeecCCChH---hHHHH-HhCCCCEEEEEccCCCCHHHHHHHHHhh
Confidence 43 478999999999986421 11111 1223468999999999999999998764
No 168
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.56 E-value=5.2e-14 Score=120.84 Aligned_cols=121 Identities=14% Similarity=0.150 Sum_probs=82.5
Q ss_pred ccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEE
Q 029875 9 ATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLC 88 (186)
Q Consensus 9 ~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv 88 (186)
+++..++....+.+++.. .+.||||||++.|..++...++.+|++|+|+|+++...-+.... +..... .+.|++++
T Consensus 118 ~GIT~~ig~~~v~~~~~~-~i~~iDTPGhe~F~~~r~rga~~aDiaILVVda~dgv~~qT~e~-i~~~~~--~~vPiIVv 193 (587)
T TIGR00487 118 GGITQHIGAYHVENEDGK-MITFLDTPGHEAFTSMRARGAKVTDIVVLVVAADDGVMPQTIEA-ISHAKA--ANVPIIVA 193 (587)
T ss_pred CceeecceEEEEEECCCc-EEEEEECCCCcchhhHHHhhhccCCEEEEEEECCCCCCHhHHHH-HHHHHH--cCCCEEEE
Confidence 334444444455554332 78899999999999999999999999999999987432221111 112211 47899999
Q ss_pred EeCCCCCCcccChHHHHHHHH-------cC--CcEEEeccCCCCCchHHHHHHHH
Q 029875 89 GNKVDVKNRQVKAKQVTFHRK-------KN--LQYYEISAKSNYNFEKPFLYLAR 134 (186)
Q Consensus 89 ~nK~Dl~~~~~~~~~~~~~~~-------~~--~~~~~~Sa~~~~gi~~l~~~l~~ 134 (186)
+||+|+.+... ......+.. ++ .+++++||++|.|++++|+++..
T Consensus 194 iNKiDl~~~~~-e~v~~~L~~~g~~~~~~~~~~~~v~iSAktGeGI~eLl~~I~~ 247 (587)
T TIGR00487 194 INKIDKPEANP-DRVKQELSEYGLVPEDWGGDTIFVPVSALTGDGIDELLDMILL 247 (587)
T ss_pred EECcccccCCH-HHHHHHHHHhhhhHHhcCCCceEEEEECCCCCChHHHHHhhhh
Confidence 99999965321 122222222 22 47999999999999999999874
No 169
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.56 E-value=2.3e-14 Score=125.06 Aligned_cols=124 Identities=19% Similarity=0.205 Sum_probs=86.8
Q ss_pred cceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEE
Q 029875 10 TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCG 89 (186)
Q Consensus 10 Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~ 89 (186)
|+.+..+...+..++....+.||||||++.|..++..+++.+|++|+|+|+++....+....| ..+.. .+.|+|+++
T Consensus 278 Tq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDiaILVVDA~dGv~~QT~E~I-~~~k~--~~iPiIVVi 354 (742)
T CHL00189 278 TQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDIAILIIAADDGVKPQTIEAI-NYIQA--ANVPIIVAI 354 (742)
T ss_pred ccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCEEEEEEECcCCCChhhHHHH-HHHHh--cCceEEEEE
Confidence 433344444555556678999999999999999999999999999999999874322222111 12222 478999999
Q ss_pred eCCCCCCcccChHHHHH------HHHcC--CcEEEeccCCCCCchHHHHHHHHHH
Q 029875 90 NKVDVKNRQVKAKQVTF------HRKKN--LQYYEISAKSNYNFEKPFLYLARKL 136 (186)
Q Consensus 90 nK~Dl~~~~~~~~~~~~------~~~~~--~~~~~~Sa~~~~gi~~l~~~l~~~i 136 (186)
||+|+.+.....-...+ ...++ ++++++||++|.|+.++|..+....
T Consensus 355 NKiDl~~~~~e~v~~eL~~~~ll~e~~g~~vpvv~VSAktG~GIdeLle~I~~l~ 409 (742)
T CHL00189 355 NKIDKANANTERIKQQLAKYNLIPEKWGGDTPMIPISASQGTNIDKLLETILLLA 409 (742)
T ss_pred ECCCccccCHHHHHHHHHHhccchHhhCCCceEEEEECCCCCCHHHHHHhhhhhh
Confidence 99999753221111111 12223 6899999999999999999988654
No 170
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.55 E-value=1.3e-14 Score=100.82 Aligned_cols=128 Identities=17% Similarity=0.228 Sum_probs=98.3
Q ss_pred cccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHh-hc-CCC
Q 029875 6 WGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VC-ENI 83 (186)
Q Consensus 6 ~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~-~~-~~~ 83 (186)
.-.||-|++....... ..+++.+||.+|+...+..|..||.+.|++|+|+|++++.-|+++..-+-++.. .. ..+
T Consensus 44 hltpT~GFn~k~v~~~---g~f~LnvwDiGGqr~IRpyWsNYyenvd~lIyVIDS~D~krfeE~~~el~ELleeeKl~~v 120 (185)
T KOG0074|consen 44 HLTPTNGFNTKKVEYD---GTFHLNVWDIGGQRGIRPYWSNYYENVDGLIYVIDSTDEKRFEEISEELVELLEEEKLAEV 120 (185)
T ss_pred hccccCCcceEEEeec---CcEEEEEEecCCccccchhhhhhhhccceEEEEEeCCchHhHHHHHHHHHHHhhhhhhhcc
Confidence 4579999888877765 679999999999999999999999999999999999999889987644444433 32 579
Q ss_pred CEEEEEeCCCCCCcccChH-HH----HHHHHcCCcEEEeccCCCCCchHHHHHHHHHH
Q 029875 84 PIVLCGNKVDVKNRQVKAK-QV----TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 136 (186)
Q Consensus 84 p~ilv~nK~Dl~~~~~~~~-~~----~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 136 (186)
|+++.+||.|+.-....++ .. ...+.....+.+|||.+++|+.+-..++....
T Consensus 121 pvlIfankQdlltaa~~eeia~klnl~~lrdRswhIq~csals~eg~~dg~~wv~sn~ 178 (185)
T KOG0074|consen 121 PVLIFANKQDLLTAAKVEEIALKLNLAGLRDRSWHIQECSALSLEGSTDGSDWVQSNP 178 (185)
T ss_pred ceeehhhhhHHHhhcchHHHHHhcchhhhhhceEEeeeCccccccCccCcchhhhcCC
Confidence 9999999999864322222 11 11122235688999999999999988877543
No 171
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.55 E-value=8.9e-14 Score=99.60 Aligned_cols=117 Identities=16% Similarity=0.065 Sum_probs=84.7
Q ss_pred cccceEEEEEEEEEECCeEEEEEEEeCCCccccCCc--------cccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhh
Q 029875 8 KATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL--------RDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV 79 (186)
Q Consensus 8 ~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~--------~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~ 79 (186)
.|++..++....+..+ ...+.+|||||...+... ....+..+|++++|+|++++.+......|..
T Consensus 32 ~~~~~~~~~~~~~~~~--~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~----- 104 (157)
T cd04164 32 IAGTTRDVIEESIDIG--GIPVRLIDTAGIRETEDEIEKIGIERAREAIEEADLVLFVIDASRGLDEEDLEILEL----- 104 (157)
T ss_pred CCCCccceEEEEEEeC--CEEEEEEECCCcCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCCCHHHHHHHHh-----
Confidence 3444455555555544 356789999998665432 2245678999999999998877666544333
Q ss_pred cCCCCEEEEEeCCCCCCcccChHHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHH
Q 029875 80 CENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 136 (186)
Q Consensus 80 ~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 136 (186)
..+.|+++|+||+|+.+.... .......+++++||+++.|+++++++|...+
T Consensus 105 ~~~~~vi~v~nK~D~~~~~~~-----~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~ 156 (157)
T cd04164 105 PADKPIIVVLNKSDLLPDSEL-----LSLLAGKPIIAISAKTGEGLDELKEALLELA 156 (157)
T ss_pred hcCCCEEEEEEchhcCCcccc-----ccccCCCceEEEECCCCCCHHHHHHHHHHhh
Confidence 347999999999999754332 2344467899999999999999999998754
No 172
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.55 E-value=1.1e-13 Score=114.48 Aligned_cols=114 Identities=17% Similarity=0.223 Sum_probs=86.2
Q ss_pred EEEEEEEeCCCccc----cCCccccccc---cCcEEEEEEeCCCh---hhHHhHHHHHHHHHhhc---CCCCEEEEEeCC
Q 029875 26 KIRFYCWDTAGQEK----FGGLRDGYYI---HGQCAIIMFDVTAR---LTYKNVPTWHRDLCRVC---ENIPIVLCGNKV 92 (186)
Q Consensus 26 ~~~l~l~Dt~G~~~----~~~~~~~~~~---~ad~vilv~D~~~~---~s~~~i~~~~~~~~~~~---~~~p~ilv~nK~ 92 (186)
...+.||||||... ...+...+++ .++++|+|+|+++. +++++...|.+.+..+. .+.|++||+||+
T Consensus 205 ~~~~~laD~PGliega~~~~gLg~~fLrhier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~ 284 (424)
T PRK12297 205 GRSFVMADIPGLIEGASEGVGLGHQFLRHIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKM 284 (424)
T ss_pred CceEEEEECCCCcccccccchHHHHHHHHHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCC
Confidence 45788999999743 2234445544 59999999999864 57777778888877764 378999999999
Q ss_pred CCCCcccChHHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCCCC
Q 029875 93 DVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPN 141 (186)
Q Consensus 93 Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~ 141 (186)
|+.+. ......+++.++.+++.+||+++.|++++++++.+.+...+.
T Consensus 285 DL~~~--~e~l~~l~~~l~~~i~~iSA~tgeGI~eL~~~L~~~l~~~~~ 331 (424)
T PRK12297 285 DLPEA--EENLEEFKEKLGPKVFPISALTGQGLDELLYAVAELLEETPE 331 (424)
T ss_pred CCcCC--HHHHHHHHHHhCCcEEEEeCCCCCCHHHHHHHHHHHHHhCcc
Confidence 98532 122345566666789999999999999999999998876543
No 173
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.55 E-value=9.1e-14 Score=119.74 Aligned_cols=124 Identities=13% Similarity=0.080 Sum_probs=91.2
Q ss_pred cccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCc------ccccc--ccCcEEEEEEeCCChhhHHhHHHHHHHHH
Q 029875 6 WGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL------RDGYY--IHGQCAIIMFDVTARLTYKNVPTWHRDLC 77 (186)
Q Consensus 6 ~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~------~~~~~--~~ad~vilv~D~~~~~s~~~i~~~~~~~~ 77 (186)
.+.|++.++.....+.+++. .+++|||||+..+... .+.++ .++|++++|+|+++.+. ...+..++.
T Consensus 22 ~n~pG~Tv~~~~~~i~~~~~--~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~VvDat~ler---~l~l~~ql~ 96 (591)
T TIGR00437 22 GNWPGVTVEKKEGKLGFQGE--DIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVNVVDASNLER---NLYLTLQLL 96 (591)
T ss_pred cCCCCeEEEEEEEEEEECCe--EEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEEEecCCcchh---hHHHHHHHH
Confidence 34566667776666666655 4689999999887654 33443 37999999999997432 223333333
Q ss_pred hhcCCCCEEEEEeCCCCCCc-ccChHHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHH
Q 029875 78 RVCENIPIVLCGNKVDVKNR-QVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 136 (186)
Q Consensus 78 ~~~~~~p~ilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 136 (186)
+ .+.|+++|+||+|+.++ ....+...+.+..+++++++||++|.|++++++.+.+..
T Consensus 97 ~--~~~PiIIVlNK~Dl~~~~~i~~d~~~L~~~lg~pvv~tSA~tg~Gi~eL~~~i~~~~ 154 (591)
T TIGR00437 97 E--LGIPMILALNLVDEAEKKGIRIDEEKLEERLGVPVVPTSATEGRGIERLKDAIRKAI 154 (591)
T ss_pred h--cCCCEEEEEehhHHHHhCCChhhHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3 37999999999999643 333345577788899999999999999999999998764
No 174
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.55 E-value=8.6e-15 Score=106.28 Aligned_cols=103 Identities=12% Similarity=0.013 Sum_probs=75.5
Q ss_pred EEeCCCccccCCcc----ccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCcccChHHHHH
Q 029875 31 CWDTAGQEKFGGLR----DGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTF 106 (186)
Q Consensus 31 l~Dt~G~~~~~~~~----~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~ 106 (186)
+|||||+......+ ...+++||++++|+|+++..++.. .|+..+ ..+.|+++++||+|+.+.. ......+
T Consensus 41 ~iDtpG~~~~~~~~~~~~~~~~~~ad~il~v~d~~~~~s~~~--~~~~~~---~~~~~ii~v~nK~Dl~~~~-~~~~~~~ 114 (158)
T PRK15467 41 DIDTPGEYFSHPRWYHALITTLQDVDMLIYVHGANDPESRLP--AGLLDI---GVSKRQIAVISKTDMPDAD-VAATRKL 114 (158)
T ss_pred cccCCccccCCHHHHHHHHHHHhcCCEEEEEEeCCCcccccC--HHHHhc---cCCCCeEEEEEccccCccc-HHHHHHH
Confidence 69999974322211 223689999999999998877643 454443 2367999999999996532 2234466
Q ss_pred HHHcCC--cEEEeccCCCCCchHHHHHHHHHHhCC
Q 029875 107 HRKKNL--QYYEISAKSNYNFEKPFLYLARKLAGD 139 (186)
Q Consensus 107 ~~~~~~--~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 139 (186)
+.+.++ +++++||++|.|++++|..+.+.+.+.
T Consensus 115 ~~~~~~~~p~~~~Sa~~g~gi~~l~~~l~~~~~~~ 149 (158)
T PRK15467 115 LLETGFEEPIFELNSHDPQSVQQLVDYLASLTKQE 149 (158)
T ss_pred HHHcCCCCCEEEEECCCccCHHHHHHHHHHhchhh
Confidence 666764 899999999999999999998877543
No 175
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.55 E-value=5.3e-14 Score=103.95 Aligned_cols=110 Identities=17% Similarity=0.112 Sum_probs=82.4
Q ss_pred eEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCcccCh---
Q 029875 25 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA--- 101 (186)
Q Consensus 25 ~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~--- 101 (186)
....+.||||||+..+...+..+++.+|++++|+|+++..+... ..++..+.. .+.|+++++||+|+.......
T Consensus 60 ~~~~~~liDtpG~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~--~~~~i~iv~nK~D~~~~~~~~~~~ 136 (189)
T cd00881 60 PDRRVNFIDTPGHEDFSSEVIRGLSVSDGAILVVDANEGVQPQT-REHLRIARE--GGLPIIVAINKIDRVGEEDLEEVL 136 (189)
T ss_pred CCEEEEEEeCCCcHHHHHHHHHHHHhcCEEEEEEECCCCCcHHH-HHHHHHHHH--CCCCeEEEEECCCCcchhcHHHHH
Confidence 35688999999999988888999999999999999988654432 334444433 479999999999997521111
Q ss_pred -HHHHHHHH--------------cCCcEEEeccCCCCCchHHHHHHHHHHh
Q 029875 102 -KQVTFHRK--------------KNLQYYEISAKSNYNFEKPFLYLARKLA 137 (186)
Q Consensus 102 -~~~~~~~~--------------~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 137 (186)
...+..+. ...+++++||++|.|+++++.++.+.+.
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~ 187 (189)
T cd00881 137 REIKELLGLIGFISTKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHLP 187 (189)
T ss_pred HHHHHHHccccccchhhhhcccCCcceEEEEecccCcCHHHHHHHHHhhCC
Confidence 11222222 2467999999999999999999998863
No 176
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.54 E-value=1.5e-13 Score=114.55 Aligned_cols=121 Identities=17% Similarity=0.172 Sum_probs=83.2
Q ss_pred EEEEEEEEEECCeEEEEEEEeCCCccccCCcc-----------ccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcC
Q 029875 13 VEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLR-----------DGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE 81 (186)
Q Consensus 13 ~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~-----------~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~ 81 (186)
.+.....+..++. .+.+|||||..++.... ..+++.||++|+|+|+++..+.++. .++..+.. .
T Consensus 208 ~~~~~~~~~~~~~--~~~liDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~~~~~~~-~~~~~~~~--~ 282 (429)
T TIGR03594 208 RDSIDIPFERNGK--KYLLIDTAGIRRKGKVTEGVEKYSVLRTLKAIERADVVLLVLDATEGITEQDL-RIAGLILE--A 282 (429)
T ss_pred ECcEeEEEEECCc--EEEEEECCCccccccchhhHHHHHHHHHHHHHHhCCEEEEEEECCCCccHHHH-HHHHHHHH--c
Confidence 3444445555554 67899999987665432 2357899999999999988776654 33333333 3
Q ss_pred CCCEEEEEeCCCCCC-cccChHHH-HHHHH----cCCcEEEeccCCCCCchHHHHHHHHHHhC
Q 029875 82 NIPIVLCGNKVDVKN-RQVKAKQV-TFHRK----KNLQYYEISAKSNYNFEKPFLYLARKLAG 138 (186)
Q Consensus 82 ~~p~ilv~nK~Dl~~-~~~~~~~~-~~~~~----~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 138 (186)
+.|+++|+||+|+.+ .....+.. .+... .+++++++||++|.|++++|+++.+....
T Consensus 283 ~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vi~~SA~~g~~v~~l~~~i~~~~~~ 345 (429)
T TIGR03594 283 GKALVIVVNKWDLVKDEKTREEFKKELRRKLPFLDFAPIVFISALTGQGVDKLLDAIDEVYEN 345 (429)
T ss_pred CCcEEEEEECcccCCCHHHHHHHHHHHHHhcccCCCCceEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 789999999999972 21111211 22222 24689999999999999999999887643
No 177
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.51 E-value=2.1e-13 Score=120.02 Aligned_cols=112 Identities=14% Similarity=0.171 Sum_probs=79.0
Q ss_pred EEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhh-cCCCCEEEEEeCCCCCC
Q 029875 18 LDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV-CENIPIVLCGNKVDVKN 96 (186)
Q Consensus 18 ~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~-~~~~p~ilv~nK~Dl~~ 96 (186)
..+.+++ ..+.||||||++.|..++...++.+|++|||||+++...-+. .+.+... ..+.|+||++||+|+.+
T Consensus 330 ~~v~~~~--~~ItfiDTPGhe~F~~m~~rga~~aDiaILVVdAddGv~~qT----~e~i~~a~~~~vPiIVviNKiDl~~ 403 (787)
T PRK05306 330 YQVETNG--GKITFLDTPGHEAFTAMRARGAQVTDIVVLVVAADDGVMPQT----IEAINHAKAAGVPIIVAINKIDKPG 403 (787)
T ss_pred EEEEECC--EEEEEEECCCCccchhHHHhhhhhCCEEEEEEECCCCCCHhH----HHHHHHHHhcCCcEEEEEECccccc
Confidence 3444444 578899999999999999999999999999999987422111 1122222 14799999999999975
Q ss_pred cccC---hHHH---HHHHHcC--CcEEEeccCCCCCchHHHHHHHHH
Q 029875 97 RQVK---AKQV---TFHRKKN--LQYYEISAKSNYNFEKPFLYLARK 135 (186)
Q Consensus 97 ~~~~---~~~~---~~~~~~~--~~~~~~Sa~~~~gi~~l~~~l~~~ 135 (186)
.... .+.. .++..++ ++++++||++|.||+++|+++...
T Consensus 404 a~~e~V~~eL~~~~~~~e~~g~~vp~vpvSAktG~GI~eLle~I~~~ 450 (787)
T PRK05306 404 ANPDRVKQELSEYGLVPEEWGGDTIFVPVSAKTGEGIDELLEAILLQ 450 (787)
T ss_pred cCHHHHHHHHHHhcccHHHhCCCceEEEEeCCCCCCchHHHHhhhhh
Confidence 3211 1111 1122233 689999999999999999998753
No 178
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.51 E-value=1.1e-13 Score=95.36 Aligned_cols=87 Identities=22% Similarity=0.436 Sum_probs=69.7
Q ss_pred ccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHH---HHHHHHHhhcCCC
Q 029875 7 GKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVP---TWHRDLCRVCENI 83 (186)
Q Consensus 7 ~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~---~~~~~~~~~~~~~ 83 (186)
+.++-+..+......+......+++||++|++.+...+..++.++|++|+|||++++.||+.+. .|+..+.....+.
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~~~~~ 109 (119)
T PF08477_consen 30 PEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILVYDLSDPESLEYLSQLLKWLKNIRKRDKNI 109 (119)
T ss_dssp --SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEEEECCGHHHHHHHHHHHHHHHHHHHHSSCS
T ss_pred ccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEEEcCCChHHHHHHHHHHHHHHHHHccCCCC
Confidence 3444455555556666777777999999999999988888899999999999999999998874 4677777666789
Q ss_pred CEEEEEeCCC
Q 029875 84 PIVLCGNKVD 93 (186)
Q Consensus 84 p~ilv~nK~D 93 (186)
|++||+||.|
T Consensus 110 piilv~nK~D 119 (119)
T PF08477_consen 110 PIILVGNKSD 119 (119)
T ss_dssp EEEEEEE-TC
T ss_pred CEEEEEeccC
Confidence 9999999998
No 179
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.51 E-value=2.6e-13 Score=111.04 Aligned_cols=134 Identities=15% Similarity=0.146 Sum_probs=104.5
Q ss_pred CCCccccccceEEEEEEEEEE-CCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc
Q 029875 2 NVSVWGKATIGVEVHPLDFFT-NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC 80 (186)
Q Consensus 2 ~~~~~~~~Tig~~~~~~~~~~-~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~ 80 (186)
|+..+..-||-.+-....+.. +|..+.|+|+||||+-.|.--....+.-|.|+++|+|++..-..+.+.+.+..+.+
T Consensus 50 diERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHVDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~-- 127 (603)
T COG0481 50 DIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALEN-- 127 (603)
T ss_pred hhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCccceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHc--
Confidence 334445556665555555554 67889999999999999988888888999999999999987666666555555544
Q ss_pred CCCCEEEEEeCCCCCCcccChHHHHHHHHcCC---cEEEeccCCCCCchHHHHHHHHHHhC
Q 029875 81 ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL---QYYEISAKSNYNFEKPFLYLARKLAG 138 (186)
Q Consensus 81 ~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~---~~~~~Sa~~~~gi~~l~~~l~~~i~~ 138 (186)
+.-++-|.||+||+...+..-..+...-.|+ ..+.+|||+|.||++++++++..+.-
T Consensus 128 -~LeIiPViNKIDLP~Adpervk~eIe~~iGid~~dav~~SAKtG~gI~~iLe~Iv~~iP~ 187 (603)
T COG0481 128 -NLEIIPVLNKIDLPAADPERVKQEIEDIIGIDASDAVLVSAKTGIGIEDVLEAIVEKIPP 187 (603)
T ss_pred -CcEEEEeeecccCCCCCHHHHHHHHHHHhCCCcchheeEecccCCCHHHHHHHHHhhCCC
Confidence 7889999999999987665555555556665 48999999999999999999998854
No 180
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.50 E-value=3.7e-13 Score=110.62 Aligned_cols=140 Identities=18% Similarity=0.103 Sum_probs=97.2
Q ss_pred EEEEEEeCCCccccCC----ccc---cccccCcEEEEEEeCC---ChhhHHhHHHHHHHHHhhc---CCCCEEEEEeCCC
Q 029875 27 IRFYCWDTAGQEKFGG----LRD---GYYIHGQCAIIMFDVT---ARLTYKNVPTWHRDLCRVC---ENIPIVLCGNKVD 93 (186)
Q Consensus 27 ~~l~l~Dt~G~~~~~~----~~~---~~~~~ad~vilv~D~~---~~~s~~~i~~~~~~~~~~~---~~~p~ilv~nK~D 93 (186)
..+.|+||||.-.-.. +.. ..+..++++++|+|++ +...++....|.+.+..+. .+.|+++|+||+|
T Consensus 207 ~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiD 286 (390)
T PRK12298 207 RSFVVADIPGLIEGASEGAGLGIRFLKHLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKID 286 (390)
T ss_pred cEEEEEeCCCccccccchhhHHHHHHHHHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCc
Confidence 3578999999743211 111 2467899999999998 4556777778888877754 4689999999999
Q ss_pred CCCcccChH-HHHHHHHcC--CcEEEeccCCCCCchHHHHHHHHHHhCCCCcccccCCCCCCCccccCHHHHHHHH
Q 029875 94 VKNRQVKAK-QVTFHRKKN--LQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHE 166 (186)
Q Consensus 94 l~~~~~~~~-~~~~~~~~~--~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (186)
+.+.....+ ...+....+ .+++.+||+++.|++++++.+.+.+.+.+...........+.++...+..+++..
T Consensus 287 l~~~~el~~~l~~l~~~~~~~~~Vi~ISA~tg~GIdeLl~~I~~~L~~~~~~~~~~~~td~~~~~~~~EiiRE~~~ 362 (390)
T PRK12298 287 LLDEEEAEERAKAIVEALGWEGPVYLISAASGLGVKELCWDLMTFIEENPREEAEEAEAPEKVEFMWDDYHREQLE 362 (390)
T ss_pred cCChHHHHHHHHHHHHHhCCCCCEEEEECCCCcCHHHHHHHHHHHhhhCcccCCcccccCccHHHHHHHHHHHHhh
Confidence 975332222 223444444 4789999999999999999999999877655444455445555555555555543
No 181
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.49 E-value=1.7e-13 Score=106.29 Aligned_cols=97 Identities=14% Similarity=0.136 Sum_probs=79.5
Q ss_pred ccccCCccccccccCcEEEEEEeCCChh-hHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCc-ccChHHHHHHHHcCCcE
Q 029875 37 QEKFGGLRDGYYIHGQCAIIMFDVTARL-TYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR-QVKAKQVTFHRKKNLQY 114 (186)
Q Consensus 37 ~~~~~~~~~~~~~~ad~vilv~D~~~~~-s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~ 114 (186)
.++|..+.+.+++++|++++|||++++. +|..+.+|+..+.. .+.|+++|+||+||.+. ....+..+.....++++
T Consensus 23 ~eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~--~~i~~vIV~NK~DL~~~~~~~~~~~~~~~~~g~~v 100 (245)
T TIGR00157 23 AERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA--QNIEPIIVLNKIDLLDDEDMEKEQLDIYRNIGYQV 100 (245)
T ss_pred ecccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH--CCCCEEEEEECcccCCCHHHHHHHHHHHHHCCCeE
Confidence 3789999999999999999999999877 89999999987654 57999999999999643 22223333344578899
Q ss_pred EEeccCCCCCchHHHHHHHHH
Q 029875 115 YEISAKSNYNFEKPFLYLARK 135 (186)
Q Consensus 115 ~~~Sa~~~~gi~~l~~~l~~~ 135 (186)
+++||++|.|++++|..+...
T Consensus 101 ~~~SAktg~gi~eLf~~l~~~ 121 (245)
T TIGR00157 101 LMTSSKNQDGLKELIEALQNR 121 (245)
T ss_pred EEEecCCchhHHHHHhhhcCC
Confidence 999999999999999988643
No 182
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.48 E-value=2e-13 Score=101.68 Aligned_cols=111 Identities=18% Similarity=0.178 Sum_probs=80.3
Q ss_pred CeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCcccCh--
Q 029875 24 CGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA-- 101 (186)
Q Consensus 24 ~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~-- 101 (186)
.....+.|+||||+..|.......++.+|++|+|+|+.+...... ...+..+.. .+.|++++.||+|+.......
T Consensus 67 ~~~~~i~~iDtPG~~~f~~~~~~~~~~~D~ailvVda~~g~~~~~-~~~l~~~~~--~~~p~ivvlNK~D~~~~~~~~~~ 143 (188)
T PF00009_consen 67 ENNRKITLIDTPGHEDFIKEMIRGLRQADIAILVVDANDGIQPQT-EEHLKILRE--LGIPIIVVLNKMDLIEKELEEII 143 (188)
T ss_dssp ESSEEEEEEEESSSHHHHHHHHHHHTTSSEEEEEEETTTBSTHHH-HHHHHHHHH--TT-SEEEEEETCTSSHHHHHHHH
T ss_pred ccccceeecccccccceeecccceecccccceeeeeccccccccc-ccccccccc--cccceEEeeeeccchhhhHHHHH
Confidence 456788899999999988877788999999999999997644332 233333333 378999999999997322211
Q ss_pred -HHH-HHHHHc------CCcEEEeccCCCCCchHHHHHHHHHHh
Q 029875 102 -KQV-TFHRKK------NLQYYEISAKSNYNFEKPFLYLARKLA 137 (186)
Q Consensus 102 -~~~-~~~~~~------~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 137 (186)
+.. .+.+.. .++++.+||++|.|+.++++.+.+.+.
T Consensus 144 ~~~~~~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P 187 (188)
T PF00009_consen 144 EEIKEKLLKEYGENGEEIVPVIPISALTGDGIDELLEALVELLP 187 (188)
T ss_dssp HHHHHHHHHHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred HHHHHHhccccccCccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 111 333333 247999999999999999999998764
No 183
>PRK10218 GTP-binding protein; Provisional
Probab=99.46 E-value=7.9e-13 Score=113.85 Aligned_cols=127 Identities=12% Similarity=0.119 Sum_probs=95.0
Q ss_pred cccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEE
Q 029875 8 KATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVL 87 (186)
Q Consensus 8 ~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~il 87 (186)
.++.|+++..+...+....+.+.||||||+..|...+..+++.+|++|+|+|+++....+ ...++..+.. .+.|.++
T Consensus 49 E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~~v~~~l~~aDg~ILVVDa~~G~~~q-t~~~l~~a~~--~gip~IV 125 (607)
T PRK10218 49 EKERGITILAKNTAIKWNDYRINIVDTPGHADFGGEVERVMSMVDSVLLVVDAFDGPMPQ-TRFVTKKAFA--YGLKPIV 125 (607)
T ss_pred cccCceEEEEEEEEEecCCEEEEEEECCCcchhHHHHHHHHHhCCEEEEEEecccCccHH-HHHHHHHHHH--cCCCEEE
Confidence 457888888888888778899999999999999999999999999999999998754332 2333444333 3789999
Q ss_pred EEeCCCCCCcccCh---HHHHHHHH-------cCCcEEEeccCCCC----------CchHHHHHHHHHHh
Q 029875 88 CGNKVDVKNRQVKA---KQVTFHRK-------KNLQYYEISAKSNY----------NFEKPFLYLARKLA 137 (186)
Q Consensus 88 v~nK~Dl~~~~~~~---~~~~~~~~-------~~~~~~~~Sa~~~~----------gi~~l~~~l~~~i~ 137 (186)
++||+|+.+..... +...+... ..++++.+||++|. |+..+++.++..+.
T Consensus 126 viNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP 195 (607)
T PRK10218 126 VINKVDRPGARPDWVVDQVFDLFVNLDATDEQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVP 195 (607)
T ss_pred EEECcCCCCCchhHHHHHHHHHHhccCccccccCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCC
Confidence 99999987533222 22222211 24679999999998 57888888877775
No 184
>PRK11058 GTPase HflX; Provisional
Probab=99.46 E-value=9.7e-13 Score=109.32 Aligned_cols=121 Identities=17% Similarity=0.094 Sum_probs=81.6
Q ss_pred EEEEEEEEECCeEEEEEEEeCCCcccc--CCccc------cccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc-CCCC
Q 029875 14 EVHPLDFFTNCGKIRFYCWDTAGQEKF--GGLRD------GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIP 84 (186)
Q Consensus 14 ~~~~~~~~~~~~~~~l~l~Dt~G~~~~--~~~~~------~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-~~~p 84 (186)
+.....+.+.+. ..+.||||+|..+. ..++. ..++.||++|+|+|++++.+++.+..|...+.... .+.|
T Consensus 233 d~~~~~i~l~~~-~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~p 311 (426)
T PRK11058 233 DPTLRRIDVADV-GETVLADTVGFIRHLPHDLVAAFKATLQETRQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIP 311 (426)
T ss_pred CCceEEEEeCCC-CeEEEEecCcccccCCHHHHHHHHHHHHHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCC
Confidence 333334444432 25679999998432 12222 23678999999999999888877655544444432 4789
Q ss_pred EEEEEeCCCCCCcccChHHHHHHHHcCCc-EEEeccCCCCCchHHHHHHHHHHhC
Q 029875 85 IVLCGNKVDVKNRQVKAKQVTFHRKKNLQ-YYEISAKSNYNFEKPFLYLARKLAG 138 (186)
Q Consensus 85 ~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi~~l~~~l~~~i~~ 138 (186)
+++|+||+|+.+... ..... ...+.+ ++.+||++|.|++++++++.+.+..
T Consensus 312 vIiV~NKiDL~~~~~--~~~~~-~~~~~~~~v~ISAktG~GIdeL~e~I~~~l~~ 363 (426)
T PRK11058 312 TLLVMNKIDMLDDFE--PRIDR-DEENKPIRVWLSAQTGAGIPLLFQALTERLSG 363 (426)
T ss_pred EEEEEEcccCCCchh--HHHHH-HhcCCCceEEEeCCCCCCHHHHHHHHHHHhhh
Confidence 999999999864311 11111 123445 5889999999999999999998854
No 185
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.46 E-value=1.1e-12 Score=108.97 Aligned_cols=127 Identities=16% Similarity=0.190 Sum_probs=95.9
Q ss_pred cccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEE
Q 029875 8 KATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVL 87 (186)
Q Consensus 8 ~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~il 87 (186)
.-||-..-.+..+. +|..+.+.++||||+-.|..-....+.-++|+|||+|++...-.+.+..+...+.. +.-+|.
T Consensus 107 GITIkaQtasify~-~~~~ylLNLIDTPGHvDFs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~---~L~iIp 182 (650)
T KOG0462|consen 107 GITIKAQTASIFYK-DGQSYLLNLIDTPGHVDFSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFEA---GLAIIP 182 (650)
T ss_pred CcEEEeeeeEEEEE-cCCceEEEeecCCCcccccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHc---CCeEEE
Confidence 33444333333332 47889999999999999999999999999999999999987665655554444443 788999
Q ss_pred EEeCCCCCCcccChHHHHHHHHcC---CcEEEeccCCCCCchHHHHHHHHHHhC
Q 029875 88 CGNKVDVKNRQVKAKQVTFHRKKN---LQYYEISAKSNYNFEKPFLYLARKLAG 138 (186)
Q Consensus 88 v~nK~Dl~~~~~~~~~~~~~~~~~---~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 138 (186)
|.||+|++...+..-..++...+. .+++.+|||+|.|++++|.++++.+.-
T Consensus 183 VlNKIDlp~adpe~V~~q~~~lF~~~~~~~i~vSAK~G~~v~~lL~AII~rVPp 236 (650)
T KOG0462|consen 183 VLNKIDLPSADPERVENQLFELFDIPPAEVIYVSAKTGLNVEELLEAIIRRVPP 236 (650)
T ss_pred eeeccCCCCCCHHHHHHHHHHHhcCCccceEEEEeccCccHHHHHHHHHhhCCC
Confidence 999999997655443333333333 479999999999999999999988843
No 186
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.45 E-value=3.4e-13 Score=116.06 Aligned_cols=125 Identities=12% Similarity=0.172 Sum_probs=92.5
Q ss_pred ceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEe
Q 029875 11 IGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGN 90 (186)
Q Consensus 11 ig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~n 90 (186)
-|+++..+...+....+++.||||||+..|...+..+++.+|++++|+|+++.. ......|+..+... ++|+++++|
T Consensus 48 rGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev~~~l~~aD~alLVVDa~~G~-~~qT~~~l~~a~~~--~ip~IVviN 124 (594)
T TIGR01394 48 RGITILAKNTAIRYNGTKINIVDTPGHADFGGEVERVLGMVDGVLLLVDASEGP-MPQTRFVLKKALEL--GLKPIVVIN 124 (594)
T ss_pred CCccEEeeeEEEEECCEEEEEEECCCHHHHHHHHHHHHHhCCEEEEEEeCCCCC-cHHHHHHHHHHHHC--CCCEEEEEE
Confidence 455555555555556788999999999999988899999999999999998742 33445666666553 789999999
Q ss_pred CCCCCCccc---ChHHHHHHH-------HcCCcEEEeccCCCC----------CchHHHHHHHHHHhC
Q 029875 91 KVDVKNRQV---KAKQVTFHR-------KKNLQYYEISAKSNY----------NFEKPFLYLARKLAG 138 (186)
Q Consensus 91 K~Dl~~~~~---~~~~~~~~~-------~~~~~~~~~Sa~~~~----------gi~~l~~~l~~~i~~ 138 (186)
|+|+.+... ..+...+.. ...++++.+||++|. |+..+|+.++..+..
T Consensus 125 KiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~ 192 (594)
T TIGR01394 125 KIDRPSARPDEVVDEVFDLFAELGADDEQLDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPA 192 (594)
T ss_pred CCCCCCcCHHHHHHHHHHHHHhhccccccccCcEEechhhcCcccccCcccccCHHHHHHHHHHhCCC
Confidence 999865322 222223322 234689999999996 799999999888754
No 187
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.45 E-value=1.5e-12 Score=109.41 Aligned_cols=116 Identities=18% Similarity=0.168 Sum_probs=80.3
Q ss_pred eEEEEEEEeCCCccccC----Cccc---cccccCcEEEEEEeCCCh----hhHHhHHHHHHHHHhhc------------C
Q 029875 25 GKIRFYCWDTAGQEKFG----GLRD---GYYIHGQCAIIMFDVTAR----LTYKNVPTWHRDLCRVC------------E 81 (186)
Q Consensus 25 ~~~~l~l~Dt~G~~~~~----~~~~---~~~~~ad~vilv~D~~~~----~s~~~i~~~~~~~~~~~------------~ 81 (186)
....+.||||||..... .+.. ..+..++++|+|+|+++. +.+.++..|..++..+. .
T Consensus 204 ~~~~f~laDtPGliegas~g~gLg~~fLrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~ 283 (500)
T PRK12296 204 GDTRFTVADVPGLIPGASEGKGLGLDFLRHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLA 283 (500)
T ss_pred CCeEEEEEECCCCccccchhhHHHHHHHHHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhc
Confidence 34678999999964211 1212 235679999999999853 34555555555554432 3
Q ss_pred CCCEEEEEeCCCCCCcccChH-HHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCCC
Q 029875 82 NIPIVLCGNKVDVKNRQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDP 140 (186)
Q Consensus 82 ~~p~ilv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~ 140 (186)
+.|+|||+||+|+.+.....+ ........+++++.+||+++.|+++++.+|.+.+....
T Consensus 284 ~kP~IVVlNKiDL~da~el~e~l~~~l~~~g~~Vf~ISA~tgeGLdEL~~~L~ell~~~r 343 (500)
T PRK12296 284 ERPRLVVLNKIDVPDARELAEFVRPELEARGWPVFEVSAASREGLRELSFALAELVEEAR 343 (500)
T ss_pred CCCEEEEEECccchhhHHHHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHhhh
Confidence 689999999999975322122 22233445789999999999999999999999886643
No 188
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.45 E-value=5.2e-13 Score=114.63 Aligned_cols=102 Identities=23% Similarity=0.250 Sum_probs=74.2
Q ss_pred EEEEEeCCCccccCCccccccccCcEEEEEEeCCC---hhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCcc------
Q 029875 28 RFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTA---RLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ------ 98 (186)
Q Consensus 28 ~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~---~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~------ 98 (186)
.+.||||||++.|..++..+++.+|++++|+|+++ +.+++.+.. +.. .+.|+++++||+|+.+.-
T Consensus 70 ~l~~iDTpG~e~f~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~----l~~--~~vpiIVv~NK~Dl~~~~~~~~~~ 143 (590)
T TIGR00491 70 GLLFIDTPGHEAFTNLRKRGGALADLAILIVDINEGFKPQTQEALNI----LRM--YKTPFVVAANKIDRIPGWRSHEGR 143 (590)
T ss_pred cEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHHH----HHH--cCCCEEEEEECCCccchhhhccCc
Confidence 38899999999999999999999999999999997 445544322 222 378999999999996310
Q ss_pred --------cChHH------------HHHHH------------Hc--CCcEEEeccCCCCCchHHHHHHHHH
Q 029875 99 --------VKAKQ------------VTFHR------------KK--NLQYYEISAKSNYNFEKPFLYLARK 135 (186)
Q Consensus 99 --------~~~~~------------~~~~~------------~~--~~~~~~~Sa~~~~gi~~l~~~l~~~ 135 (186)
..... ..+.. .+ .++++.+||++|+|+++++.++...
T Consensus 144 ~f~e~sak~~~~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l 214 (590)
T TIGR00491 144 PFMESFSKQEIQVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGL 214 (590)
T ss_pred hHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHH
Confidence 00000 01110 11 2579999999999999999988653
No 189
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.44 E-value=9.1e-13 Score=110.12 Aligned_cols=118 Identities=21% Similarity=0.169 Sum_probs=81.9
Q ss_pred ccceEEEEEEEEEECCeEEEEEEEeCCCccc--------cCCccccccccCcEEEEEEeCCChhhHH--hHHHHHHHHHh
Q 029875 9 ATIGVEVHPLDFFTNCGKIRFYCWDTAGQEK--------FGGLRDGYYIHGQCAIIMFDVTARLTYK--NVPTWHRDLCR 78 (186)
Q Consensus 9 ~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~--------~~~~~~~~~~~ad~vilv~D~~~~~s~~--~i~~~~~~~~~ 78 (186)
|.+..+.......+++ ..+.+|||||+.. +......++..||++|+|+|+++..+.. .+..|+..
T Consensus 33 ~~~t~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvd~~~~~~~~~~~~~~~l~~--- 107 (435)
T PRK00093 33 PGVTRDRIYGEAEWLG--REFILIDTGGIEPDDDGFEKQIREQAELAIEEADVILFVVDGRAGLTPADEEIAKILRK--- 107 (435)
T ss_pred CCCcccceEEEEEECC--cEEEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHH---
Confidence 3344455555555555 6789999999987 2223455678999999999998854432 23444443
Q ss_pred hcCCCCEEEEEeCCCCCCcccChHHHHHHHHcCC-cEEEeccCCCCCchHHHHHHHHHH
Q 029875 79 VCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL-QYYEISAKSNYNFEKPFLYLARKL 136 (186)
Q Consensus 79 ~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~i 136 (186)
.+.|+++|+||+|+.+.. .....+ ...++ .++++||++|.|+.++|+.+....
T Consensus 108 --~~~piilv~NK~D~~~~~--~~~~~~-~~lg~~~~~~iSa~~g~gv~~l~~~I~~~~ 161 (435)
T PRK00093 108 --SNKPVILVVNKVDGPDEE--ADAYEF-YSLGLGEPYPISAEHGRGIGDLLDAILEEL 161 (435)
T ss_pred --cCCcEEEEEECccCccch--hhHHHH-HhcCCCCCEEEEeeCCCCHHHHHHHHHhhC
Confidence 278999999999975421 112222 34455 489999999999999999998743
No 190
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.44 E-value=7.8e-13 Score=110.26 Aligned_cols=119 Identities=18% Similarity=0.142 Sum_probs=79.6
Q ss_pred cccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHH--HHHhhcCCCCE
Q 029875 8 KATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHR--DLCRVCENIPI 85 (186)
Q Consensus 8 ~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~--~~~~~~~~~p~ 85 (186)
..++..+.....+. ...+.+.||||||+++|.......++.+|++|+|+|+++..++.. ..+.. .+.......|+
T Consensus 68 ~rg~Tid~~~~~~~--~~~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~-~~t~~~~~~~~~~~~~~i 144 (426)
T TIGR00483 68 ERGVTIDVAHWKFE--TDKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQ-PQTREHAFLARTLGINQL 144 (426)
T ss_pred hcCceEEEEEEEEc--cCCeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccC-CchHHHHHHHHHcCCCeE
Confidence 34455555555544 345788999999999887666667889999999999998754321 12211 12222334579
Q ss_pred EEEEeCCCCCCc-c-----cChHHHHHHHHcC-----CcEEEeccCCCCCchHHH
Q 029875 86 VLCGNKVDVKNR-Q-----VKAKQVTFHRKKN-----LQYYEISAKSNYNFEKPF 129 (186)
Q Consensus 86 ilv~nK~Dl~~~-~-----~~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~l~ 129 (186)
+|++||+|+.+. . ...+...+++..+ ++++++||++|.|+.+++
T Consensus 145 IVviNK~Dl~~~~~~~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~ 199 (426)
T TIGR00483 145 IVAINKMDSVNYDEEEFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKS 199 (426)
T ss_pred EEEEEChhccCccHHHHHHHHHHHHHHHHHcCCCcccceEEEeeccccccccccc
Confidence 999999999642 1 1122334555554 579999999999998754
No 191
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.43 E-value=9.5e-13 Score=109.73 Aligned_cols=106 Identities=15% Similarity=0.052 Sum_probs=70.7
Q ss_pred CCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhH-HHHHHHHHhhcCCCCEEEEEeCCCCCCccc--
Q 029875 23 NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKNRQV-- 99 (186)
Q Consensus 23 ~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~-- 99 (186)
+...+.+.||||||+++|.......++.||++|+|+|+++..++... ..++..+ ......|+++++||+|+.+...
T Consensus 80 ~~~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~-~~~~~~~iivviNK~Dl~~~~~~~ 158 (425)
T PRK12317 80 ETDKYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLA-RTLGINQLIVAINKMDAVNYDEKR 158 (425)
T ss_pred ecCCeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHH-HHcCCCeEEEEEEccccccccHHH
Confidence 34567899999999998876555567899999999999973222221 1222222 2222346999999999974211
Q ss_pred ----ChHHHHHHHHcC-----CcEEEeccCCCCCchHHH
Q 029875 100 ----KAKQVTFHRKKN-----LQYYEISAKSNYNFEKPF 129 (186)
Q Consensus 100 ----~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~l~ 129 (186)
..+...++...+ .+++.+||++|.|+.++.
T Consensus 159 ~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~ 197 (425)
T PRK12317 159 YEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKS 197 (425)
T ss_pred HHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCccccc
Confidence 112234444444 469999999999998754
No 192
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.43 E-value=4.1e-12 Score=92.21 Aligned_cols=118 Identities=18% Similarity=0.166 Sum_probs=77.8
Q ss_pred EEEEEEEEEECCeEEEEEEEeCCCccccCCc-----------cccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcC
Q 029875 13 VEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL-----------RDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE 81 (186)
Q Consensus 13 ~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~-----------~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~ 81 (186)
.+.....+..++. .+.+|||||....... ....+.++|++++|+|++++.+.... .+...+.. .
T Consensus 38 ~~~~~~~~~~~~~--~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~-~~~~~~~~--~ 112 (174)
T cd01895 38 RDSIDVPFEYDGK--KYTLIDTAGIRRKGKVEEGIEKYSVLRTLKAIERADVVLLVIDATEGITEQDL-RIAGLILE--E 112 (174)
T ss_pred cCceeeEEEECCe--eEEEEECCCCccccchhccHHHHHHHHHHHHHhhcCeEEEEEeCCCCcchhHH-HHHHHHHh--c
Confidence 3444444444554 4679999997544211 12246789999999999998776543 33333322 3
Q ss_pred CCCEEEEEeCCCCCCcc--cChHHH-HHHHHc----CCcEEEeccCCCCCchHHHHHHHHH
Q 029875 82 NIPIVLCGNKVDVKNRQ--VKAKQV-TFHRKK----NLQYYEISAKSNYNFEKPFLYLARK 135 (186)
Q Consensus 82 ~~p~ilv~nK~Dl~~~~--~~~~~~-~~~~~~----~~~~~~~Sa~~~~gi~~l~~~l~~~ 135 (186)
+.|+++++||+|+.+.. ...... .+.... ..+++++||++|.|+.++++.+.+.
T Consensus 113 ~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 113 GKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFISALTGQGVDKLFDAIDEV 173 (174)
T ss_pred CCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEEeccCCCCHHHHHHHHHHh
Confidence 68999999999997542 212212 222333 3689999999999999999998764
No 193
>PRK00089 era GTPase Era; Reviewed
Probab=99.42 E-value=1.7e-12 Score=103.16 Aligned_cols=137 Identities=14% Similarity=0.118 Sum_probs=90.5
Q ss_pred eEEEEEEEeCCCccccC--------CccccccccCcEEEEEEeCCChhhHHhHHHH-HHHHHhhcCCCCEEEEEeCCCCC
Q 029875 25 GKIRFYCWDTAGQEKFG--------GLRDGYYIHGQCAIIMFDVTARLTYKNVPTW-HRDLCRVCENIPIVLCGNKVDVK 95 (186)
Q Consensus 25 ~~~~l~l~Dt~G~~~~~--------~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~-~~~~~~~~~~~p~ilv~nK~Dl~ 95 (186)
...++.+|||||..... ......+.++|++++|+|+++..+ ....+ ++.+.. .+.|+++|+||+|+.
T Consensus 51 ~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~~~D~il~vvd~~~~~~--~~~~~i~~~l~~--~~~pvilVlNKiDl~ 126 (292)
T PRK00089 51 DDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLKDVDLVLFVVDADEKIG--PGDEFILEKLKK--VKTPVILVLNKIDLV 126 (292)
T ss_pred CCceEEEEECCCCCCchhHHHHHHHHHHHHHHhcCCEEEEEEeCCCCCC--hhHHHHHHHHhh--cCCCEEEEEECCcCC
Confidence 34789999999975432 223446778999999999998322 22222 222222 368999999999997
Q ss_pred -CcccChH-HHHHHHHcC-CcEEEeccCCCCCchHHHHHHHHHHhCCCCcccccCCCCCCCccccCHHHHHHH
Q 029875 96 -NRQVKAK-QVTFHRKKN-LQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQH 165 (186)
Q Consensus 96 -~~~~~~~-~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (186)
....... ...+....+ .+++.+||++|.|++++++.+.+.+...+...........+.+....+..+++.
T Consensus 127 ~~~~~l~~~~~~l~~~~~~~~i~~iSA~~~~gv~~L~~~L~~~l~~~~~~y~~~~~td~~~r~~~~EiiRe~~ 199 (292)
T PRK00089 127 KDKEELLPLLEELSELMDFAEIVPISALKGDNVDELLDVIAKYLPEGPPYYPEDQITDRPERFLAAEIIREKL 199 (292)
T ss_pred CCHHHHHHHHHHHHhhCCCCeEEEecCCCCCCHHHHHHHHHHhCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 3222222 223444333 579999999999999999999999987765555555555555555555444443
No 194
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.41 E-value=3.7e-12 Score=90.63 Aligned_cols=107 Identities=17% Similarity=0.139 Sum_probs=78.3
Q ss_pred EEEEEEEeCCCccccCCccc-------cccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCcc
Q 029875 26 KIRFYCWDTAGQEKFGGLRD-------GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ 98 (186)
Q Consensus 26 ~~~l~l~Dt~G~~~~~~~~~-------~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 98 (186)
...+.+|||+|+..+..... .+++.+|++++|+|+++..+..... |...... .+.|+++|+||+|+....
T Consensus 44 ~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il~v~~~~~~~~~~~~~-~~~~~~~--~~~~~ivv~nK~D~~~~~ 120 (163)
T cd00880 44 LGPVVLIDTPGIDEAGGLGREREELARRVLERADLILFVVDADLRADEEEEK-LLELLRE--RGKPVLLVLNKIDLLPEE 120 (163)
T ss_pred CCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHH-HHHHHHh--cCCeEEEEEEccccCChh
Confidence 56889999999877654443 4788999999999999987665543 3333322 479999999999987533
Q ss_pred cChHH-----HHHHHHcCCcEEEeccCCCCCchHHHHHHHHH
Q 029875 99 VKAKQ-----VTFHRKKNLQYYEISAKSNYNFEKPFLYLARK 135 (186)
Q Consensus 99 ~~~~~-----~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 135 (186)
..... .......+.+++.+||++|.|+++++.++.+.
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l~~~l~~~ 162 (163)
T cd00880 121 EEEELLELRLLILLLLLGLPVIAVSALTGEGIDELREALIEA 162 (163)
T ss_pred hHHHHHHHHHhhcccccCCceEEEeeeccCCHHHHHHHHHhh
Confidence 22221 12223335789999999999999999999865
No 195
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.40 E-value=2e-12 Score=113.93 Aligned_cols=126 Identities=15% Similarity=0.146 Sum_probs=85.7
Q ss_pred ccceEEEEEEEEEECCeEEEEEEEeCCCccc----------cCCcc-ccccccCcEEEEEEeCCChhhHHhHHHHHHHHH
Q 029875 9 ATIGVEVHPLDFFTNCGKIRFYCWDTAGQEK----------FGGLR-DGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLC 77 (186)
Q Consensus 9 ~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~----------~~~~~-~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~ 77 (186)
|++..+.....+.+++.. +.||||||..+ |..++ ...++.||++++|+|+++..+++.+. ++..+.
T Consensus 482 ~gtT~d~~~~~~~~~~~~--~~liDTaG~~~~~~~~~~~e~~~~~r~~~~i~~advvilViDat~~~s~~~~~-i~~~~~ 558 (712)
T PRK09518 482 AGTTRDPVDEIVEIDGED--WLFIDTAGIKRRQHKLTGAEYYSSLRTQAAIERSELALFLFDASQPISEQDLK-VMSMAV 558 (712)
T ss_pred CCCCcCcceeEEEECCCE--EEEEECCCcccCcccchhHHHHHHHHHHHHhhcCCEEEEEEECCCCCCHHHHH-HHHHHH
Confidence 444466666666777765 45899999643 11111 23468899999999999988877654 334443
Q ss_pred hhcCCCCEEEEEeCCCCCCcccChHHH-HHHHHc----CCcEEEeccCCCCCchHHHHHHHHHHhCC
Q 029875 78 RVCENIPIVLCGNKVDVKNRQVKAKQV-TFHRKK----NLQYYEISAKSNYNFEKPFLYLARKLAGD 139 (186)
Q Consensus 78 ~~~~~~p~ilv~nK~Dl~~~~~~~~~~-~~~~~~----~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 139 (186)
. .+.|+++|+||+|+.+........ .+...+ ..+++.+||++|.|++++|..+.+.+...
T Consensus 559 ~--~~~piIiV~NK~DL~~~~~~~~~~~~~~~~l~~~~~~~ii~iSAktg~gv~~L~~~i~~~~~~~ 623 (712)
T PRK09518 559 D--AGRALVLVFNKWDLMDEFRRQRLERLWKTEFDRVTWARRVNLSAKTGWHTNRLAPAMQEALESW 623 (712)
T ss_pred H--cCCCEEEEEEchhcCChhHHHHHHHHHHHhccCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 3 378999999999997532211111 122221 24679999999999999999999887643
No 196
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.40 E-value=2.9e-12 Score=112.93 Aligned_cols=122 Identities=21% Similarity=0.150 Sum_probs=80.5
Q ss_pred ccceEEEEEEEEEECCeEEEEEEEeCCCccc--------cCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc
Q 029875 9 ATIGVEVHPLDFFTNCGKIRFYCWDTAGQEK--------FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC 80 (186)
Q Consensus 9 ~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~--------~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~ 80 (186)
|++..+.......+++ ..+.+|||||.+. +......+++.||++|+|+|+++..+..+ ..|...+..
T Consensus 307 pGvT~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~aD~iL~VvDa~~~~~~~d-~~i~~~Lr~-- 381 (712)
T PRK09518 307 PGVTRDRVSYDAEWAG--TDFKLVDTGGWEADVEGIDSAIASQAQIAVSLADAVVFVVDGQVGLTSTD-ERIVRMLRR-- 381 (712)
T ss_pred CCeeEEEEEEEEEECC--EEEEEEeCCCcCCCCccHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHh--
Confidence 3343444433333344 4678899999764 22334557889999999999987432221 245555443
Q ss_pred CCCCEEEEEeCCCCCCcccChHHHHHHHHcCC-cEEEeccCCCCCchHHHHHHHHHHhC
Q 029875 81 ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL-QYYEISAKSNYNFEKPFLYLARKLAG 138 (186)
Q Consensus 81 ~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~i~~ 138 (186)
.+.|+++|+||+|+.... .....+. ..+. ..+++||++|.||.++|++++..+..
T Consensus 382 ~~~pvIlV~NK~D~~~~~--~~~~~~~-~lg~~~~~~iSA~~g~GI~eLl~~i~~~l~~ 437 (712)
T PRK09518 382 AGKPVVLAVNKIDDQASE--YDAAEFW-KLGLGEPYPISAMHGRGVGDLLDEALDSLKV 437 (712)
T ss_pred cCCCEEEEEECcccccch--hhHHHHH-HcCCCCeEEEECCCCCCchHHHHHHHHhccc
Confidence 479999999999986432 1112221 2232 46799999999999999999998865
No 197
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.36 E-value=7.7e-12 Score=104.31 Aligned_cols=119 Identities=18% Similarity=0.198 Sum_probs=83.0
Q ss_pred ceEEEEEEEEEECCeEEEEEEEeCCCcc--------ccCCccccccccCcEEEEEEeCCChhhHHh--HHHHHHHHHhhc
Q 029875 11 IGVEVHPLDFFTNCGKIRFYCWDTAGQE--------KFGGLRDGYYIHGQCAIIMFDVTARLTYKN--VPTWHRDLCRVC 80 (186)
Q Consensus 11 ig~~~~~~~~~~~~~~~~l~l~Dt~G~~--------~~~~~~~~~~~~ad~vilv~D~~~~~s~~~--i~~~~~~~~~~~ 80 (186)
+..+.......+++. .+.+|||||.. .+......+++.||++++|+|+++..+... +..|+. +
T Consensus 33 ~t~d~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ad~vl~vvD~~~~~~~~d~~i~~~l~---~-- 105 (429)
T TIGR03594 33 VTRDRKYGDAEWGGR--EFILIDTGGIEEDDDGLDKQIREQAEIAIEEADVILFVVDGREGLTPEDEEIAKWLR---K-- 105 (429)
T ss_pred cccCceEEEEEECCe--EEEEEECCCCCCcchhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHH---H--
Confidence 333444444455554 58899999963 334455667899999999999987544332 333433 2
Q ss_pred CCCCEEEEEeCCCCCCcccChHHHHHHHHcCC-cEEEeccCCCCCchHHHHHHHHHHhCC
Q 029875 81 ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL-QYYEISAKSNYNFEKPFLYLARKLAGD 139 (186)
Q Consensus 81 ~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 139 (186)
.+.|+++|+||+|+.+.... ... ...+++ +++.+||++|.|+.++++.+...+...
T Consensus 106 ~~~piilVvNK~D~~~~~~~--~~~-~~~lg~~~~~~vSa~~g~gv~~ll~~i~~~l~~~ 162 (429)
T TIGR03594 106 SGKPVILVANKIDGKKEDAV--AAE-FYSLGFGEPIPISAEHGRGIGDLLDAILELLPEE 162 (429)
T ss_pred hCCCEEEEEECccCCccccc--HHH-HHhcCCCCeEEEeCCcCCChHHHHHHHHHhcCcc
Confidence 36899999999998643321 122 234565 799999999999999999999888653
No 198
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.36 E-value=8.3e-12 Score=93.12 Aligned_cols=125 Identities=17% Similarity=0.135 Sum_probs=80.0
Q ss_pred cccccceEEEEEEEEEECCeEEEEEEEeCCCc----------cccCCccccccccC---cEEEEEEeCCChhhHHh--HH
Q 029875 6 WGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQ----------EKFGGLRDGYYIHG---QCAIIMFDVTARLTYKN--VP 70 (186)
Q Consensus 6 ~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~----------~~~~~~~~~~~~~a---d~vilv~D~~~~~s~~~--i~ 70 (186)
.+.+|.|.........+ ...+.||||||. +.+..+...+++.+ +++++|+|.+++.+... +.
T Consensus 52 ~~~~~~~~t~~~~~~~~---~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~i~ 128 (196)
T PRK00454 52 RTSKTPGRTQLINFFEV---NDKLRLVDLPGYGYAKVSKEEKEKWQKLIEEYLRTRENLKGVVLLIDSRHPLKELDLQMI 128 (196)
T ss_pred cccCCCCceeEEEEEec---CCeEEEeCCCCCCCcCCCchHHHHHHHHHHHHHHhCccceEEEEEEecCCCCCHHHHHHH
Confidence 45566665543332222 367899999994 33334445555544 68889999887544332 22
Q ss_pred HHHHHHHhhcCCCCEEEEEeCCCCCCcccChH----HHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhC
Q 029875 71 TWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK----QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG 138 (186)
Q Consensus 71 ~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~----~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 138 (186)
.|+ .. .+.|+++++||+|+.+....+. ..........+++++||++|.|++++++.+.+.+.+
T Consensus 129 ~~l---~~--~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~Sa~~~~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 129 EWL---KE--YGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEVILFSSLKKQGIDELRAAIAKWLAE 195 (196)
T ss_pred HHH---HH--cCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCceEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 232 22 3689999999999864321111 223333335789999999999999999999877643
No 199
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.35 E-value=1.4e-11 Score=102.93 Aligned_cols=124 Identities=15% Similarity=0.134 Sum_probs=81.4
Q ss_pred ccceEEEEEEEEEECCeEEEEEEEeCCCccccCCcc-----------ccccccCcEEEEEEeCCChhhHHhHHHHHHHHH
Q 029875 9 ATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLR-----------DGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLC 77 (186)
Q Consensus 9 ~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~-----------~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~ 77 (186)
|.+..+.....+..++. .+.+|||||..+...+. ..+++.+|++|+|+|+++..+.++. .++..+.
T Consensus 205 ~gtt~~~~~~~~~~~~~--~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~~~~~~~~-~i~~~~~ 281 (435)
T PRK00093 205 AGTTRDSIDTPFERDGQ--KYTLIDTAGIRRKGKVTEGVEKYSVIRTLKAIERADVVLLVIDATEGITEQDL-RIAGLAL 281 (435)
T ss_pred CCceEEEEEEEEEECCe--eEEEEECCCCCCCcchhhHHHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHH-HHHHHHH
Confidence 33334444444444544 46789999975433221 2357889999999999988776653 3333333
Q ss_pred hhcCCCCEEEEEeCCCCCCcccChHHH-HHHHH----cCCcEEEeccCCCCCchHHHHHHHHHHh
Q 029875 78 RVCENIPIVLCGNKVDVKNRQVKAKQV-TFHRK----KNLQYYEISAKSNYNFEKPFLYLARKLA 137 (186)
Q Consensus 78 ~~~~~~p~ilv~nK~Dl~~~~~~~~~~-~~~~~----~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 137 (186)
+ .+.|+++++||+|+.+.....+.. .+... ..++++++||++|.|+++++..+.+...
T Consensus 282 ~--~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~i~~~SA~~~~gv~~l~~~i~~~~~ 344 (435)
T PRK00093 282 E--AGRALVIVVNKWDLVDEKTMEEFKKELRRRLPFLDYAPIVFISALTGQGVDKLLEAIDEAYE 344 (435)
T ss_pred H--cCCcEEEEEECccCCCHHHHHHHHHHHHHhcccccCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 3 368999999999997432212211 12122 2468999999999999999999887654
No 200
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.34 E-value=1.3e-11 Score=106.79 Aligned_cols=122 Identities=13% Similarity=0.019 Sum_probs=80.9
Q ss_pred ccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCCh---hhHHhHHHHHHHHHhhcCCC
Q 029875 7 GKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTAR---LTYKNVPTWHRDLCRVCENI 83 (186)
Q Consensus 7 ~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~---~s~~~i~~~~~~~~~~~~~~ 83 (186)
...||...|.. +...+ ...+.||||||+++|.......+.++|++++|+|+++. .+.+.+ ..+ .. .+.
T Consensus 34 rGiTI~l~~~~--~~~~~-g~~i~~IDtPGhe~fi~~m~~g~~~~D~~lLVVda~eg~~~qT~ehl----~il-~~-lgi 104 (614)
T PRK10512 34 RGMTIDLGYAY--WPQPD-GRVLGFIDVPGHEKFLSNMLAGVGGIDHALLVVACDDGVMAQTREHL----AIL-QL-TGN 104 (614)
T ss_pred CCceEEeeeEE--EecCC-CcEEEEEECCCHHHHHHHHHHHhhcCCEEEEEEECCCCCcHHHHHHH----HHH-HH-cCC
Confidence 35566544443 32221 23478999999999976666778899999999999873 333332 212 22 245
Q ss_pred C-EEEEEeCCCCCCcccC----hHHHHHHHHcC---CcEEEeccCCCCCchHHHHHHHHHHh
Q 029875 84 P-IVLCGNKVDVKNRQVK----AKQVTFHRKKN---LQYYEISAKSNYNFEKPFLYLARKLA 137 (186)
Q Consensus 84 p-~ilv~nK~Dl~~~~~~----~~~~~~~~~~~---~~~~~~Sa~~~~gi~~l~~~l~~~i~ 137 (186)
| ++||+||+|+.+.... .+...+....+ .+++.+||++|.|++++++.|.....
T Consensus 105 ~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~gI~~L~~~L~~~~~ 166 (614)
T PRK10512 105 PMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEGRGIDALREHLLQLPE 166 (614)
T ss_pred CeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhc
Confidence 5 6799999999753211 12223433333 68999999999999999999986543
No 201
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.34 E-value=5.3e-12 Score=95.30 Aligned_cols=73 Identities=18% Similarity=0.207 Sum_probs=60.5
Q ss_pred CeEEEEEEEeCCCccccCCccccccccC-cEEEEEEeCCCh-hhHHhHHHHHHHHHhh----cCCCCEEEEEeCCCCCC
Q 029875 24 CGKIRFYCWDTAGQEKFGGLRDGYYIHG-QCAIIMFDVTAR-LTYKNVPTWHRDLCRV----CENIPIVLCGNKVDVKN 96 (186)
Q Consensus 24 ~~~~~l~l~Dt~G~~~~~~~~~~~~~~a-d~vilv~D~~~~-~s~~~i~~~~~~~~~~----~~~~p~ilv~nK~Dl~~ 96 (186)
+..+.+.+|||||+.+++..+..+++++ +++|+|+|+++. .++..+..|+..+... ....|+++++||+|+..
T Consensus 45 ~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~ 123 (203)
T cd04105 45 GKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFT 123 (203)
T ss_pred CCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcc
Confidence 4567899999999999998888899998 999999999997 6777776666554332 25899999999999864
No 202
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.34 E-value=6.8e-12 Score=92.67 Aligned_cols=115 Identities=17% Similarity=0.133 Sum_probs=71.2
Q ss_pred cccccceEEEEEEEEEECCeEEEEEEEeCCCcc----------ccCCcccccccc---CcEEEEEEeCCChhhHHhHHHH
Q 029875 6 WGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQE----------KFGGLRDGYYIH---GQCAIIMFDVTARLTYKNVPTW 72 (186)
Q Consensus 6 ~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~----------~~~~~~~~~~~~---ad~vilv~D~~~~~s~~~i~~~ 72 (186)
.+.++.|.......+.+++ .+.+|||||.. .+..+...+++. ++++++|+|++++.+.... .+
T Consensus 46 ~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~-~~ 121 (179)
T TIGR03598 46 RTSKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVSKEEKEKWQKLIEEYLEKRENLKGVVLLMDIRHPLKELDL-EM 121 (179)
T ss_pred cccCCCCcceEEEEEEeCC---cEEEEeCCCCccccCChhHHHHHHHHHHHHHHhChhhcEEEEEecCCCCCCHHHH-HH
Confidence 3455666554433344343 58899999953 233333445553 5899999999886555443 22
Q ss_pred HHHHHhhcCCCCEEEEEeCCCCCCcc-c---ChHHHHHHHHcC--CcEEEeccCCCCCch
Q 029875 73 HRDLCRVCENIPIVLCGNKVDVKNRQ-V---KAKQVTFHRKKN--LQYYEISAKSNYNFE 126 (186)
Q Consensus 73 ~~~~~~~~~~~p~ilv~nK~Dl~~~~-~---~~~~~~~~~~~~--~~~~~~Sa~~~~gi~ 126 (186)
+..+.. .+.|+++++||+|+.+.. . ..+..+.+...+ .+++++||++|.|++
T Consensus 122 ~~~~~~--~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~~~~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 122 LEWLRE--RGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDADDPSVQLFSSLKKTGID 179 (179)
T ss_pred HHHHHH--cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccCCCceEEEECCCCCCCC
Confidence 233322 368999999999986422 1 112223344433 479999999999984
No 203
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.33 E-value=6.7e-12 Score=108.05 Aligned_cols=100 Identities=23% Similarity=0.298 Sum_probs=72.8
Q ss_pred EEEEeCCCccccCCccccccccCcEEEEEEeCCC---hhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCc-cc-----
Q 029875 29 FYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTA---RLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR-QV----- 99 (186)
Q Consensus 29 l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~---~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~-~~----- 99 (186)
+.||||||++.|..++...++.+|++|+|+|+++ +.+++.+.. +.. .+.|+++++||+|+... ..
T Consensus 73 i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~----~~~--~~vpiIvviNK~D~~~~~~~~~~~~ 146 (586)
T PRK04004 73 LLFIDTPGHEAFTNLRKRGGALADIAILVVDINEGFQPQTIEAINI----LKR--RKTPFVVAANKIDRIPGWKSTEDAP 146 (586)
T ss_pred EEEEECCChHHHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHH----HHH--cCCCEEEEEECcCCchhhhhhcCch
Confidence 6899999999999998888999999999999997 556554432 222 37899999999998521 00
Q ss_pred ------------Ch-------HHHHHHHHc---------------CCcEEEeccCCCCCchHHHHHHHH
Q 029875 100 ------------KA-------KQVTFHRKK---------------NLQYYEISAKSNYNFEKPFLYLAR 134 (186)
Q Consensus 100 ------------~~-------~~~~~~~~~---------------~~~~~~~Sa~~~~gi~~l~~~l~~ 134 (186)
.. +........ .++++.+||++|.|+.+++..+..
T Consensus 147 ~~e~~~~~~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~ 215 (586)
T PRK04004 147 FLESIEKQSQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAG 215 (586)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHH
Confidence 00 000111111 257899999999999999988764
No 204
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.33 E-value=2e-11 Score=87.81 Aligned_cols=110 Identities=14% Similarity=0.087 Sum_probs=75.2
Q ss_pred CCeEEEEEEEeCCCccccCC--------ccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCC
Q 029875 23 NCGKIRFYCWDTAGQEKFGG--------LRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDV 94 (186)
Q Consensus 23 ~~~~~~l~l~Dt~G~~~~~~--------~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl 94 (186)
......+.+|||||...... .....+..+|++++|+|+++..+.. ...+...+.+. +.|+++|+||+|+
T Consensus 47 ~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~i~~v~d~~~~~~~~-~~~~~~~~~~~--~~~~iiv~nK~Dl 123 (168)
T cd04163 47 TDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALKDVDLVLFVVDASEPIGEG-DEFILELLKKS--KTPVILVLNKIDL 123 (168)
T ss_pred EcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHHhCCEEEEEEECCCccCch-HHHHHHHHHHh--CCCEEEEEEchhc
Confidence 33457888999999765432 2334578899999999999872211 12333334332 6899999999999
Q ss_pred CC-cccChHHH-HHHHHc-CCcEEEeccCCCCCchHHHHHHHHH
Q 029875 95 KN-RQVKAKQV-TFHRKK-NLQYYEISAKSNYNFEKPFLYLARK 135 (186)
Q Consensus 95 ~~-~~~~~~~~-~~~~~~-~~~~~~~Sa~~~~gi~~l~~~l~~~ 135 (186)
.. .....+.. .+.... ..+++.+|++++.|++++++.|.+.
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~l~~~ 167 (168)
T cd04163 124 VKDKEDLLPLLEKLKELGPFAEIFPISALKGENVDELLEEIVKY 167 (168)
T ss_pred cccHHHHHHHHHHHHhccCCCceEEEEeccCCChHHHHHHHHhh
Confidence 73 22222222 333334 2689999999999999999999765
No 205
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.33 E-value=5.7e-12 Score=95.41 Aligned_cols=101 Identities=21% Similarity=0.184 Sum_probs=66.2
Q ss_pred EEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCccc------
Q 029875 26 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV------ 99 (186)
Q Consensus 26 ~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~------ 99 (186)
...+.||||||+++|.......++.||++|+|+|+++...-+. ......+. .....++|+|+||+|+.+...
T Consensus 76 ~~~~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~-~~~~~~~~-~~~~~~iIvviNK~D~~~~~~~~~~~i 153 (208)
T cd04166 76 KRKFIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQT-RRHSYILS-LLGIRHVVVAVNKMDLVDYSEEVFEEI 153 (208)
T ss_pred CceEEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhH-HHHHHHHH-HcCCCcEEEEEEchhcccCCHHHHHHH
Confidence 4467789999998886656667889999999999987532111 12122222 222245788999999864211
Q ss_pred ChHHHHHHHHcC---CcEEEeccCCCCCchHH
Q 029875 100 KAKQVTFHRKKN---LQYYEISAKSNYNFEKP 128 (186)
Q Consensus 100 ~~~~~~~~~~~~---~~~~~~Sa~~~~gi~~l 128 (186)
..+...+...++ .+++.+||++|.|+.+.
T Consensus 154 ~~~~~~~~~~~~~~~~~ii~iSA~~g~ni~~~ 185 (208)
T cd04166 154 VADYLAFAAKLGIEDITFIPISALDGDNVVSR 185 (208)
T ss_pred HHHHHHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence 112224445555 35899999999999853
No 206
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.33 E-value=1.9e-11 Score=108.06 Aligned_cols=123 Identities=13% Similarity=0.094 Sum_probs=91.6
Q ss_pred ccceEEEEEEEEEECCeEEEEEEEeCCCccccCCc----------ccccc--ccCcEEEEEEeCCChhhHHhHHHHHHHH
Q 029875 9 ATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL----------RDGYY--IHGQCAIIMFDVTARLTYKNVPTWHRDL 76 (186)
Q Consensus 9 ~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~----------~~~~~--~~ad~vilv~D~~~~~s~~~i~~~~~~~ 76 (186)
++.|..+..++..+......+.+|||||...+... .+.++ ..+|++++|+|+++.+.- ..|..++
T Consensus 32 n~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l~~~~aD~vI~VvDat~ler~---l~l~~ql 108 (772)
T PRK09554 32 NWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLERN---LYLTLQL 108 (772)
T ss_pred CCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHHHhccCCCEEEEEecCCcchhh---HHHHHHH
Confidence 44666666666666666778899999999877542 12233 379999999999985432 2344555
Q ss_pred HhhcCCCCEEEEEeCCCCCC-cccChHHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHH
Q 029875 77 CRVCENIPIVLCGNKVDVKN-RQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 136 (186)
Q Consensus 77 ~~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 136 (186)
.+. +.|+++++||+|+.+ +.......++.+.++++++.+||++|.|++++.+.+....
T Consensus 109 ~e~--giPvIvVlNK~Dl~~~~~i~id~~~L~~~LG~pVvpiSA~~g~GIdeL~~~I~~~~ 167 (772)
T PRK09554 109 LEL--GIPCIVALNMLDIAEKQNIRIDIDALSARLGCPVIPLVSTRGRGIEALKLAIDRHQ 167 (772)
T ss_pred HHc--CCCEEEEEEchhhhhccCcHHHHHHHHHHhCCCEEEEEeecCCCHHHHHHHHHHhh
Confidence 443 799999999999874 3443445577788899999999999999999999988765
No 207
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.33 E-value=4.2e-12 Score=105.26 Aligned_cols=111 Identities=15% Similarity=0.118 Sum_probs=77.5
Q ss_pred EEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCcccC----h
Q 029875 26 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK----A 101 (186)
Q Consensus 26 ~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~----~ 101 (186)
...+.+|||||+++|...+...+..+|++|+|+|+++..........+..+ ......|+++++||+|+.+.... .
T Consensus 79 ~~~i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l-~~~gi~~iIVvvNK~Dl~~~~~~~~~~~ 157 (406)
T TIGR03680 79 LRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMAL-EIIGIKNIVIVQNKIDLVSKEKALENYE 157 (406)
T ss_pred ccEEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHH-HHcCCCeEEEEEEccccCCHHHHHHHHH
Confidence 468899999999999877777788899999999999642111122222222 22223579999999999753211 1
Q ss_pred HHHHHHHHc---CCcEEEeccCCCCCchHHHHHHHHHHh
Q 029875 102 KQVTFHRKK---NLQYYEISAKSNYNFEKPFLYLARKLA 137 (186)
Q Consensus 102 ~~~~~~~~~---~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 137 (186)
+...+.... +++++++||++|.|+++++++|...+.
T Consensus 158 ~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~ 196 (406)
T TIGR03680 158 EIKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFIP 196 (406)
T ss_pred HHHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhCC
Confidence 222333332 568999999999999999999987664
No 208
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.31 E-value=1.6e-11 Score=102.07 Aligned_cols=105 Identities=17% Similarity=0.215 Sum_probs=80.8
Q ss_pred EEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc-CCCCEEEEEeCCCCCCcccChHHHH
Q 029875 27 IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQVKAKQVT 105 (186)
Q Consensus 27 ~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~ 105 (186)
-.|.|.||||++.|..|+..-.+=+|++|||+|+.+.- ..+.++.+.+.. .+.|++++.||+|.++........+
T Consensus 55 ~~itFiDTPGHeAFt~mRaRGa~vtDIaILVVa~dDGv----~pQTiEAI~hak~a~vP~iVAiNKiDk~~~np~~v~~e 130 (509)
T COG0532 55 PGITFIDTPGHEAFTAMRARGASVTDIAILVVAADDGV----MPQTIEAINHAKAAGVPIVVAINKIDKPEANPDKVKQE 130 (509)
T ss_pred ceEEEEcCCcHHHHHHHHhcCCccccEEEEEEEccCCc----chhHHHHHHHHHHCCCCEEEEEecccCCCCCHHHHHHH
Confidence 46778899999999999999999999999999999852 124445555543 5899999999999986544333333
Q ss_pred HHHHcC---------CcEEEeccCCCCCchHHHHHHHHHH
Q 029875 106 FHRKKN---------LQYYEISAKSNYNFEKPFLYLARKL 136 (186)
Q Consensus 106 ~~~~~~---------~~~~~~Sa~~~~gi~~l~~~l~~~i 136 (186)
+. +++ ..++.+||++|+|+.+|+..++-..
T Consensus 131 l~-~~gl~~E~~gg~v~~VpvSA~tg~Gi~eLL~~ill~a 169 (509)
T COG0532 131 LQ-EYGLVPEEWGGDVIFVPVSAKTGEGIDELLELILLLA 169 (509)
T ss_pred HH-HcCCCHhhcCCceEEEEeeccCCCCHHHHHHHHHHHH
Confidence 22 223 4699999999999999999887544
No 209
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.31 E-value=9.9e-12 Score=103.13 Aligned_cols=107 Identities=17% Similarity=0.140 Sum_probs=73.7
Q ss_pred EEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChh----hHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCcccC-
Q 029875 26 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARL----TYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK- 100 (186)
Q Consensus 26 ~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~----s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~- 100 (186)
..++.||||||+++|..........+|++++|+|+++.. +.+.+. .+. .....|+++|+||+|+.+....
T Consensus 84 ~~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~----~l~-~~~i~~iiVVlNK~Dl~~~~~~~ 158 (411)
T PRK04000 84 LRRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLM----ALD-IIGIKNIVIVQNKIDLVSKERAL 158 (411)
T ss_pred ccEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHH----HHH-HcCCCcEEEEEEeeccccchhHH
Confidence 368899999999887654444455679999999999642 333222 121 1223479999999999753221
Q ss_pred ---hHHHHHHHHc---CCcEEEeccCCCCCchHHHHHHHHHHh
Q 029875 101 ---AKQVTFHRKK---NLQYYEISAKSNYNFEKPFLYLARKLA 137 (186)
Q Consensus 101 ---~~~~~~~~~~---~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 137 (186)
.+...++... +.+++++||++|.|++++++.|...+.
T Consensus 159 ~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~ 201 (411)
T PRK04000 159 ENYEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIP 201 (411)
T ss_pred HHHHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCC
Confidence 1122333322 468999999999999999999988764
No 210
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.31 E-value=5.9e-12 Score=96.10 Aligned_cols=100 Identities=17% Similarity=0.113 Sum_probs=65.8
Q ss_pred eEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChh-------hHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCc
Q 029875 25 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARL-------TYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR 97 (186)
Q Consensus 25 ~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~-------s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 97 (186)
....+.+|||||+..|...+...++.+|++|+|+|+++.. ..+....| ... ......|+++++||+|+...
T Consensus 75 ~~~~i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~iiivvNK~Dl~~~ 152 (219)
T cd01883 75 EKYRFTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHA-LLA-RTLGVKQLIVAVNKMDDVTV 152 (219)
T ss_pred CCeEEEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHH-HHH-HHcCCCeEEEEEEccccccc
Confidence 4567889999999887766666678899999999999842 11111222 222 22234689999999999732
Q ss_pred ccC----hH----HHHHHHHcC-----CcEEEeccCCCCCch
Q 029875 98 QVK----AK----QVTFHRKKN-----LQYYEISAKSNYNFE 126 (186)
Q Consensus 98 ~~~----~~----~~~~~~~~~-----~~~~~~Sa~~~~gi~ 126 (186)
... .. ...+....+ ++++.+||++|.|+.
T Consensus 153 ~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 153 NWSEERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred cccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 111 11 112233333 569999999999987
No 211
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.29 E-value=3.2e-11 Score=86.95 Aligned_cols=113 Identities=17% Similarity=0.142 Sum_probs=75.0
Q ss_pred EEEEEEEEEECCeEEEEEEEeCCCccccCCc------ccccc--ccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCC
Q 029875 13 VEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL------RDGYY--IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP 84 (186)
Q Consensus 13 ~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~------~~~~~--~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p 84 (186)
++...-.+.+.+ ..+.|+|+||....... ...++ ...|++|+|+|+++...- .....++.+. +.|
T Consensus 35 v~~~~g~~~~~~--~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~D~ii~VvDa~~l~r~---l~l~~ql~e~--g~P 107 (156)
T PF02421_consen 35 VEKKEGIFKLGD--QQVELVDLPGIYSLSSKSEEERVARDYLLSEKPDLIIVVVDATNLERN---LYLTLQLLEL--GIP 107 (156)
T ss_dssp SEEEEEEEEETT--EEEEEEE----SSSSSSSHHHHHHHHHHHHTSSSEEEEEEEGGGHHHH---HHHHHHHHHT--TSS
T ss_pred eeeeeEEEEecC--ceEEEEECCCcccCCCCCcHHHHHHHHHhhcCCCEEEEECCCCCHHHH---HHHHHHHHHc--CCC
Confidence 345555555555 56667799997554432 23444 579999999999985421 1233444443 799
Q ss_pred EEEEEeCCCCCCc-ccChHHHHHHHHcCCcEEEeccCCCCCchHHHHHH
Q 029875 85 IVLCGNKVDVKNR-QVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 132 (186)
Q Consensus 85 ~ilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 132 (186)
++++.||+|+..+ ........+.+.++++++.+||++|.|++++++.+
T Consensus 108 ~vvvlN~~D~a~~~g~~id~~~Ls~~Lg~pvi~~sa~~~~g~~~L~~~I 156 (156)
T PF02421_consen 108 VVVVLNKMDEAERKGIEIDAEKLSERLGVPVIPVSARTGEGIDELKDAI 156 (156)
T ss_dssp EEEEEETHHHHHHTTEEE-HHHHHHHHTS-EEEEBTTTTBTHHHHHHHH
T ss_pred EEEEEeCHHHHHHcCCEECHHHHHHHhCCCEEEEEeCCCcCHHHHHhhC
Confidence 9999999998743 23334557778889999999999999999999865
No 212
>COG1159 Era GTPase [General function prediction only]
Probab=99.29 E-value=2e-11 Score=95.16 Aligned_cols=143 Identities=15% Similarity=0.114 Sum_probs=104.3
Q ss_pred eEEEEEEEeCCCccc--------cCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCC
Q 029875 25 GKIRFYCWDTAGQEK--------FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN 96 (186)
Q Consensus 25 ~~~~l~l~Dt~G~~~--------~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 96 (186)
...++.|.||||.-+ +.......++++|+++||+|++....-.+ ...++.++. .+.|++++.||+|...
T Consensus 52 ~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~dvDlilfvvd~~~~~~~~d-~~il~~lk~--~~~pvil~iNKID~~~ 128 (298)
T COG1159 52 DNAQIIFVDTPGIHKPKHALGELMNKAARSALKDVDLILFVVDADEGWGPGD-EFILEQLKK--TKTPVILVVNKIDKVK 128 (298)
T ss_pred CCceEEEEeCCCCCCcchHHHHHHHHHHHHHhccCcEEEEEEeccccCCccH-HHHHHHHhh--cCCCeEEEEEccccCC
Confidence 478899999999532 23345667889999999999998533221 122333333 3679999999999875
Q ss_pred cccC-hHHHHHHHH-cC-CcEEEeccCCCCCchHHHHHHHHHHhCCCCcccccCCCCCCCccccCHHHHHHHHHHHH
Q 029875 97 RQVK-AKQVTFHRK-KN-LQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELA 170 (186)
Q Consensus 97 ~~~~-~~~~~~~~~-~~-~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (186)
.... ....+.+.. .. ..++.+||++|.|++.+.+.+...+.+.+...........+.++...+..+++.=..++
T Consensus 129 ~~~~l~~~~~~~~~~~~f~~ivpiSA~~g~n~~~L~~~i~~~Lpeg~~~yp~d~itD~~~rf~~aEiiREk~~~~l~ 205 (298)
T COG1159 129 PKTVLLKLIAFLKKLLPFKEIVPISALKGDNVDTLLEIIKEYLPEGPWYYPEDQITDRPERFLAAEIIREKLLLLLR 205 (298)
T ss_pred cHHHHHHHHHHHHhhCCcceEEEeeccccCCHHHHHHHHHHhCCCCCCcCChhhccCChHHHHHHHHHHHHHHHhcc
Confidence 4331 222222222 22 36999999999999999999999999999999888888889888888888877655444
No 213
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.25 E-value=4.3e-11 Score=107.90 Aligned_cols=101 Identities=20% Similarity=0.278 Sum_probs=72.6
Q ss_pred EEEEeCCCccccCCccccccccCcEEEEEEeCCC---hhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCC-cccC----
Q 029875 29 FYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTA---RLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVK---- 100 (186)
Q Consensus 29 l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~---~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~-~~~~---- 100 (186)
+.||||||++.|..++...++.+|++++|+|+++ +.+++.+. .+.. .+.|+++|+||+|+.. ....
T Consensus 528 i~fiDTPGhe~F~~lr~~g~~~aDivlLVVDa~~Gi~~qT~e~I~----~lk~--~~iPiIVViNKiDL~~~~~~~~~~~ 601 (1049)
T PRK14845 528 LLFIDTPGHEAFTSLRKRGGSLADLAVLVVDINEGFKPQTIEAIN----ILRQ--YKTPFVVAANKIDLIPGWNISEDEP 601 (1049)
T ss_pred EEEEECCCcHHHHHHHHhhcccCCEEEEEEECcccCCHhHHHHHH----HHHH--cCCCEEEEEECCCCccccccccchh
Confidence 8999999999998888888899999999999987 44544432 2222 2689999999999953 2110
Q ss_pred ---------hHHH-HH----------HHHc---------------CCcEEEeccCCCCCchHHHHHHHHH
Q 029875 101 ---------AKQV-TF----------HRKK---------------NLQYYEISAKSNYNFEKPFLYLARK 135 (186)
Q Consensus 101 ---------~~~~-~~----------~~~~---------------~~~~~~~Sa~~~~gi~~l~~~l~~~ 135 (186)
+... ++ ..+. .++++.+||++|.||.+++..+...
T Consensus 602 ~~~~~~~q~~~~~~el~~~l~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l 671 (1049)
T PRK14845 602 FLLNFNEQDQHALTELEIKLYELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGL 671 (1049)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHh
Confidence 0000 11 0111 2579999999999999999877643
No 214
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.25 E-value=4.9e-11 Score=90.57 Aligned_cols=70 Identities=24% Similarity=0.245 Sum_probs=56.6
Q ss_pred CCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCC
Q 029875 23 NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK 95 (186)
Q Consensus 23 ~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~ 95 (186)
++..+.+.+|||||+..|...+..++..+|++|+|+|+++..++.. ..|+..... .+.|+++|+||+|+.
T Consensus 67 ~~~~~~i~iiDtpG~~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~--~~~p~iiviNK~D~~ 136 (213)
T cd04167 67 KGKSYLFNIIDTPGHVNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL--EGLPIVLVINKIDRL 136 (213)
T ss_pred CCCEEEEEEEECCCCcchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH--cCCCEEEEEECcccC
Confidence 4567999999999999998888889999999999999988766543 344444433 358999999999975
No 215
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.23 E-value=7.5e-11 Score=98.21 Aligned_cols=122 Identities=16% Similarity=0.134 Sum_probs=91.3
Q ss_pred cccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc-CCCCEE
Q 029875 8 KATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIV 86 (186)
Q Consensus 8 ~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-~~~p~i 86 (186)
.-|.++-.+..++. +| -.++|.||||+..|..|+..-.+-+|+++||+.+.|.- ..+..+.|.+.. .+.|+|
T Consensus 185 GITQhIGAF~V~~p-~G--~~iTFLDTPGHaAF~aMRaRGA~vtDIvVLVVAadDGV----mpQT~EaIkhAk~A~VpiV 257 (683)
T KOG1145|consen 185 GITQHIGAFTVTLP-SG--KSITFLDTPGHAAFSAMRARGANVTDIVVLVVAADDGV----MPQTLEAIKHAKSANVPIV 257 (683)
T ss_pred CccceeceEEEecC-CC--CEEEEecCCcHHHHHHHHhccCccccEEEEEEEccCCc----cHhHHHHHHHHHhcCCCEE
Confidence 34666666666665 55 46677899999999999999999999999999988741 234455566654 589999
Q ss_pred EEEeCCCCCCcccChHHHHHH------HHcC--CcEEEeccCCCCCchHHHHHHHHHH
Q 029875 87 LCGNKVDVKNRQVKAKQVTFH------RKKN--LQYYEISAKSNYNFEKPFLYLARKL 136 (186)
Q Consensus 87 lv~nK~Dl~~~~~~~~~~~~~------~~~~--~~~~~~Sa~~~~gi~~l~~~l~~~i 136 (186)
++.||||.++..+..-..++. ..+| .+++.+||++|.|++.|.++++-..
T Consensus 258 vAinKiDkp~a~pekv~~eL~~~gi~~E~~GGdVQvipiSAl~g~nl~~L~eaill~A 315 (683)
T KOG1145|consen 258 VAINKIDKPGANPEKVKRELLSQGIVVEDLGGDVQVIPISALTGENLDLLEEAILLLA 315 (683)
T ss_pred EEEeccCCCCCCHHHHHHHHHHcCccHHHcCCceeEEEeecccCCChHHHHHHHHHHH
Confidence 999999988765433333333 2222 5799999999999999888877544
No 216
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=99.22 E-value=5.7e-11 Score=95.44 Aligned_cols=129 Identities=14% Similarity=0.143 Sum_probs=88.8
Q ss_pred ccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCCh----------hhHHhHHHHHHHH
Q 029875 7 GKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTAR----------LTYKNVPTWHRDL 76 (186)
Q Consensus 7 ~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~----------~s~~~i~~~~~~~ 76 (186)
..||+|+......+ ..+.+.+||++||...+..|..++.+++++|+|+|+++. ..+.+....++.+
T Consensus 145 r~~T~Gi~~~~f~~----~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i 220 (317)
T cd00066 145 RVKTTGIVETKFTI----KNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSI 220 (317)
T ss_pred ecccCCeeEEEEEe----cceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHH
Confidence 35677766554443 568899999999999999999999999999999999974 3344444444444
Q ss_pred Hhh--cCCCCEEEEEeCCCCCCcc-----------------cC-hHHH-----HHHHHc-----CCcEEEeccCCCCCch
Q 029875 77 CRV--CENIPIVLCGNKVDVKNRQ-----------------VK-AKQV-----TFHRKK-----NLQYYEISAKSNYNFE 126 (186)
Q Consensus 77 ~~~--~~~~p~ilv~nK~Dl~~~~-----------------~~-~~~~-----~~~~~~-----~~~~~~~Sa~~~~gi~ 126 (186)
... ..+.|++|++||+|+-... .. .... ++.... .+-...++|.+..++.
T Consensus 221 ~~~~~~~~~pill~~NK~D~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~ 300 (317)
T cd00066 221 CNSRWFANTSIILFLNKKDLFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIR 300 (317)
T ss_pred HhCccccCCCEEEEccChHHHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHH
Confidence 432 2579999999999963211 01 1111 122111 1335678888888999
Q ss_pred HHHHHHHHHHhCC
Q 029875 127 KPFLYLARKLAGD 139 (186)
Q Consensus 127 ~l~~~l~~~i~~~ 139 (186)
.+|..+.+.|...
T Consensus 301 ~vf~~v~~~i~~~ 313 (317)
T cd00066 301 FVFDAVKDIILQN 313 (317)
T ss_pred HHHHHHHHHHHHH
Confidence 9998888877654
No 217
>PRK13351 elongation factor G; Reviewed
Probab=99.21 E-value=9.6e-11 Score=103.11 Aligned_cols=84 Identities=23% Similarity=0.270 Sum_probs=64.9
Q ss_pred cccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCE
Q 029875 6 WGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 85 (186)
Q Consensus 6 ~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ 85 (186)
++.+|+...+..... ..+.+.||||||+.+|...+..+++.+|++|+|+|+++..+......|. .+.. .+.|+
T Consensus 56 ~r~~ti~~~~~~~~~----~~~~i~liDtPG~~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~-~~~~--~~~p~ 128 (687)
T PRK13351 56 ERGITIESAATSCDW----DNHRINLIDTPGHIDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVWR-QADR--YGIPR 128 (687)
T ss_pred hcCCCcccceEEEEE----CCEEEEEEECCCcHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHH-HHHh--cCCCE
Confidence 456677666654333 4678999999999999888899999999999999999877666544443 3333 37899
Q ss_pred EEEEeCCCCCC
Q 029875 86 VLCGNKVDVKN 96 (186)
Q Consensus 86 ilv~nK~Dl~~ 96 (186)
++++||+|+..
T Consensus 129 iiviNK~D~~~ 139 (687)
T PRK13351 129 LIFINKMDRVG 139 (687)
T ss_pred EEEEECCCCCC
Confidence 99999999864
No 218
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=99.20 E-value=7e-11 Score=95.76 Aligned_cols=130 Identities=15% Similarity=0.144 Sum_probs=90.9
Q ss_pred cccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCCh----------hhHHhHHHHHHH
Q 029875 6 WGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTAR----------LTYKNVPTWHRD 75 (186)
Q Consensus 6 ~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~----------~s~~~i~~~~~~ 75 (186)
...||+|+......+ ..+.+.+||.+|+...+..|..++.+++++|||+|+++. ..+.+....++.
T Consensus 167 ~r~~T~Gi~~~~f~~----~~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~ 242 (342)
T smart00275 167 SRVPTTGIQETAFIV----KKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFES 242 (342)
T ss_pred eeCCccceEEEEEEE----CCeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHH
Confidence 357888987765444 456789999999999999999999999999999999974 234444445555
Q ss_pred HHhh--cCCCCEEEEEeCCCCCCcc----------------cC-hHHH-----HHHHHc------CCcEEEeccCCCCCc
Q 029875 76 LCRV--CENIPIVLCGNKVDVKNRQ----------------VK-AKQV-----TFHRKK------NLQYYEISAKSNYNF 125 (186)
Q Consensus 76 ~~~~--~~~~p~ilv~nK~Dl~~~~----------------~~-~~~~-----~~~~~~------~~~~~~~Sa~~~~gi 125 (186)
+.+. ..+.|++|++||.|+-... .. .... ++.... .+-++.+||.+-.++
T Consensus 243 l~~~~~~~~~piil~~NK~D~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~ 322 (342)
T smart00275 243 ICNSRWFANTSIILFLNKIDLFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNI 322 (342)
T ss_pred HHcCccccCCcEEEEEecHHhHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHH
Confidence 5443 2679999999999974211 01 1111 222211 133567888888899
Q ss_pred hHHHHHHHHHHhCC
Q 029875 126 EKPFLYLARKLAGD 139 (186)
Q Consensus 126 ~~l~~~l~~~i~~~ 139 (186)
..+|..+...+.+.
T Consensus 323 ~~v~~~v~~~I~~~ 336 (342)
T smart00275 323 RVVFDAVKDIILQR 336 (342)
T ss_pred HHHHHHHHHHHHHH
Confidence 99998887777653
No 219
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.20 E-value=1.5e-10 Score=83.45 Aligned_cols=124 Identities=18% Similarity=0.160 Sum_probs=79.3
Q ss_pred ccccccceEEEEEEEEEECCeEEEEEEEeCCCccc----------cCCccccccc---cCcEEEEEEeCCChhhH--HhH
Q 029875 5 VWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEK----------FGGLRDGYYI---HGQCAIIMFDVTARLTY--KNV 69 (186)
Q Consensus 5 ~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~----------~~~~~~~~~~---~ad~vilv~D~~~~~s~--~~i 69 (186)
..+.+|.|.......+..++ .+.+|||+|... +..+...++. .++++++++|.+...+. ..+
T Consensus 26 ~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~ 102 (170)
T cd01876 26 ARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLENRENLKGVVLLIDSRHGPTEIDLEM 102 (170)
T ss_pred eeecCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHHHHHHHHhChhhhEEEEEEEcCcCCCHhHHHH
Confidence 34556666665554444443 889999999533 3333444444 45789999999865322 223
Q ss_pred HHHHHHHHhhcCCCCEEEEEeCCCCCCcccChH----HHHHHH--HcCCcEEEeccCCCCCchHHHHHHHHHH
Q 029875 70 PTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK----QVTFHR--KKNLQYYEISAKSNYNFEKPFLYLARKL 136 (186)
Q Consensus 70 ~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~----~~~~~~--~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 136 (186)
..|+... ..|+++++||+|+........ .....+ ....+++++||+++.|+.++++.|.+.+
T Consensus 103 ~~~l~~~-----~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Sa~~~~~~~~l~~~l~~~~ 170 (170)
T cd01876 103 LDWLEEL-----GIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILFSSLKGQGIDELRALIEKWL 170 (170)
T ss_pred HHHHHHc-----CCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEEecCCCCCHHHHHHHHHHhC
Confidence 4454432 589999999999853221111 112222 2345799999999999999999998753
No 220
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.19 E-value=2.4e-10 Score=88.09 Aligned_cols=106 Identities=16% Similarity=0.072 Sum_probs=71.2
Q ss_pred EEEEEEEeCCCccccCC-------ccccccccCcEEEEEEeCCChh-hHHhHHHHHH-----------------------
Q 029875 26 KIRFYCWDTAGQEKFGG-------LRDGYYIHGQCAIIMFDVTARL-TYKNVPTWHR----------------------- 74 (186)
Q Consensus 26 ~~~l~l~Dt~G~~~~~~-------~~~~~~~~ad~vilv~D~~~~~-s~~~i~~~~~----------------------- 74 (186)
...+++|||||+..... ....+++++|++++|+|++++. ..+.+...++
T Consensus 46 ~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi 125 (233)
T cd01896 46 GAKIQLLDLPGIIEGAADGKGRGRQVIAVARTADLILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGI 125 (233)
T ss_pred CeEEEEEECCCcccccccchhHHHHHHHhhccCCEEEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCE
Confidence 46789999999854431 2235688999999999998765 2222222221
Q ss_pred -----------------HHHh-h-------------------------cCCCCEEEEEeCCCCCCcccChHHHHHHHHcC
Q 029875 75 -----------------DLCR-V-------------------------CENIPIVLCGNKVDVKNRQVKAKQVTFHRKKN 111 (186)
Q Consensus 75 -----------------~~~~-~-------------------------~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~ 111 (186)
.+.+ + ....|+++|+||+|+.+. .+...++. .
T Consensus 126 ~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~~---~~~~~~~~--~ 200 (233)
T cd01896 126 NITSTVPLTKLDEKTIKAILREYKIHNADVLIREDITVDDLIDVIEGNRVYIPCLYVYNKIDLISI---EELDLLAR--Q 200 (233)
T ss_pred EEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEccCCCHHHHHHHHhCCceEeeEEEEEECccCCCH---HHHHHHhc--C
Confidence 1110 0 112699999999998532 12223443 3
Q ss_pred CcEEEeccCCCCCchHHHHHHHHHH
Q 029875 112 LQYYEISAKSNYNFEKPFLYLARKL 136 (186)
Q Consensus 112 ~~~~~~Sa~~~~gi~~l~~~l~~~i 136 (186)
.+++++||++|.|++++|+.+.+.+
T Consensus 201 ~~~~~~SA~~g~gi~~l~~~i~~~L 225 (233)
T cd01896 201 PNSVVISAEKGLNLDELKERIWDKL 225 (233)
T ss_pred CCEEEEcCCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998866
No 221
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.18 E-value=1.1e-10 Score=90.17 Aligned_cols=95 Identities=16% Similarity=0.116 Sum_probs=66.8
Q ss_pred EEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCC
Q 029875 15 VHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDV 94 (186)
Q Consensus 15 ~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl 94 (186)
+......+.....++.+|||||+..|...+..+++.+|++++|+|+++..... ...|+..+.. .+.|+++++||+|+
T Consensus 52 i~~~~~~~~~~~~~i~liDTPG~~~f~~~~~~~l~~aD~~IlVvd~~~g~~~~-~~~~~~~~~~--~~~P~iivvNK~D~ 128 (237)
T cd04168 52 IFSAVASFQWEDTKVNLIDTPGHMDFIAEVERSLSVLDGAILVISAVEGVQAQ-TRILWRLLRK--LNIPTIIFVNKIDR 128 (237)
T ss_pred eeeeeEEEEECCEEEEEEeCCCccchHHHHHHHHHHhCeEEEEEeCCCCCCHH-HHHHHHHHHH--cCCCEEEEEECccc
Confidence 33333334446678999999999999888889999999999999999865432 3455555544 37899999999999
Q ss_pred CCcccChHHHHHHHHcCC
Q 029875 95 KNRQVKAKQVTFHRKKNL 112 (186)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~ 112 (186)
...........+...++.
T Consensus 129 ~~a~~~~~~~~i~~~~~~ 146 (237)
T cd04168 129 AGADLEKVYQEIKEKLSS 146 (237)
T ss_pred cCCCHHHHHHHHHHHHCC
Confidence 754332223344445554
No 222
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.18 E-value=1.9e-10 Score=98.07 Aligned_cols=82 Identities=17% Similarity=0.131 Sum_probs=59.2
Q ss_pred eEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeC
Q 029875 12 GVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNK 91 (186)
Q Consensus 12 g~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK 91 (186)
|+.+......++...+.+.+|||||+..|......+++.+|++|+|+|+++.... ....++..... .+.|+++++||
T Consensus 64 giSi~~~~~~~~~~~~~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~-~t~~l~~~~~~--~~iPiiv~iNK 140 (526)
T PRK00741 64 GISVTSSVMQFPYRDCLINLLDTPGHEDFSEDTYRTLTAVDSALMVIDAAKGVEP-QTRKLMEVCRL--RDTPIFTFINK 140 (526)
T ss_pred CCceeeeeEEEEECCEEEEEEECCCchhhHHHHHHHHHHCCEEEEEEecCCCCCH-HHHHHHHHHHh--cCCCEEEEEEC
Confidence 3344444444444567889999999999988777889999999999999875322 22344433333 47999999999
Q ss_pred CCCCC
Q 029875 92 VDVKN 96 (186)
Q Consensus 92 ~Dl~~ 96 (186)
+|+..
T Consensus 141 ~D~~~ 145 (526)
T PRK00741 141 LDRDG 145 (526)
T ss_pred Ccccc
Confidence 99753
No 223
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.17 E-value=1.9e-10 Score=90.32 Aligned_cols=96 Identities=15% Similarity=0.110 Sum_probs=64.9
Q ss_pred EEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCcc
Q 029875 19 DFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ 98 (186)
Q Consensus 19 ~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 98 (186)
...+....+.+.||||||+.+|.......++.+|++|+|+|+++..... ...+++.... .+.|+++++||+|+.+..
T Consensus 63 ~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvda~~g~~~~-~~~i~~~~~~--~~~P~iivvNK~D~~~a~ 139 (267)
T cd04169 63 VMQFEYRDCVINLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGVEPQ-TRKLFEVCRL--RGIPIITFINKLDREGRD 139 (267)
T ss_pred EEEEeeCCEEEEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCCccHH-HHHHHHHHHh--cCCCEEEEEECCccCCCC
Confidence 3344456788999999999998877777889999999999998753322 2334433332 378999999999987654
Q ss_pred cChHHHHHHHHcCCcEEEe
Q 029875 99 VKAKQVTFHRKKNLQYYEI 117 (186)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~ 117 (186)
.......+...++.+.+.+
T Consensus 140 ~~~~~~~l~~~l~~~~~~~ 158 (267)
T cd04169 140 PLELLDEIEEELGIDCTPL 158 (267)
T ss_pred HHHHHHHHHHHHCCCceeE
Confidence 3222224444556554443
No 224
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.15 E-value=2.4e-10 Score=87.49 Aligned_cols=105 Identities=13% Similarity=0.125 Sum_probs=69.5
Q ss_pred EEEEEEEeCCCccccCCcccccc--ccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCcccChHH
Q 029875 26 KIRFYCWDTAGQEKFGGLRDGYY--IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQ 103 (186)
Q Consensus 26 ~~~l~l~Dt~G~~~~~~~~~~~~--~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~ 103 (186)
...+.|.||||+++|.......+ ..+|++++|+|+.....-. ...++..+.. .+.|+++|.||+|+.+.......
T Consensus 83 ~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~-d~~~l~~l~~--~~ip~ivvvNK~D~~~~~~~~~~ 159 (224)
T cd04165 83 SKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGM-TKEHLGLALA--LNIPVFVVVTKIDLAPANILQET 159 (224)
T ss_pred CcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHH-HHHHHHHHHH--cCCCEEEEEECccccCHHHHHHH
Confidence 45677889999998855433334 3689999999998654322 2334444433 36899999999998643222221
Q ss_pred H-HHHHHc-----------------------------CCcEEEeccCCCCCchHHHHHHH
Q 029875 104 V-TFHRKK-----------------------------NLQYYEISAKSNYNFEKPFLYLA 133 (186)
Q Consensus 104 ~-~~~~~~-----------------------------~~~~~~~Sa~~~~gi~~l~~~l~ 133 (186)
. ++...+ ..+++.+||.+|.|++++...|.
T Consensus 160 ~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~ 219 (224)
T cd04165 160 LKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLN 219 (224)
T ss_pred HHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHH
Confidence 1 111111 23899999999999998887764
No 225
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.15 E-value=1.2e-10 Score=88.94 Aligned_cols=69 Identities=19% Similarity=0.171 Sum_probs=55.5
Q ss_pred CeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCC
Q 029875 24 CGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK 95 (186)
Q Consensus 24 ~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~ 95 (186)
+..+.+.||||||+..|......+++.||++|+|+|+++..+.+.. ..+..... .+.|+++++||+|+.
T Consensus 70 ~~~~~i~iiDTPG~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~-~~l~~~~~--~~~p~ilviNKiD~~ 138 (222)
T cd01885 70 GNEYLINLIDSPGHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTE-TVLRQALK--ERVKPVLVINKIDRL 138 (222)
T ss_pred CCceEEEEECCCCccccHHHHHHHHHhcCeeEEEEECCCCCCHHHH-HHHHHHHH--cCCCEEEEEECCCcc
Confidence 5589999999999999999999999999999999999987655542 22222222 368999999999985
No 226
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.15 E-value=4.5e-10 Score=84.27 Aligned_cols=101 Identities=15% Similarity=0.038 Sum_probs=67.2
Q ss_pred CCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCC-EEEEEeCCCCCCcc-cC
Q 029875 23 NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKNRQ-VK 100 (186)
Q Consensus 23 ~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~-~~ 100 (186)
.....++.|+||||...|.......+..+|++++|+|++....-+ ....+..+.. .+.| +|++.||+|+.... ..
T Consensus 61 ~~~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g~~~~-~~~~~~~~~~--~~~~~iIvviNK~D~~~~~~~~ 137 (195)
T cd01884 61 ETANRHYAHVDCPGHADYIKNMITGAAQMDGAILVVSATDGPMPQ-TREHLLLARQ--VGVPYIVVFLNKADMVDDEELL 137 (195)
T ss_pred cCCCeEEEEEECcCHHHHHHHHHHHhhhCCEEEEEEECCCCCcHH-HHHHHHHHHH--cCCCcEEEEEeCCCCCCcHHHH
Confidence 334557788899999888776777788999999999998753222 2223333333 2566 78999999986321 11
Q ss_pred ----hHHHHHHHHc-----CCcEEEeccCCCCCch
Q 029875 101 ----AKQVTFHRKK-----NLQYYEISAKSNYNFE 126 (186)
Q Consensus 101 ----~~~~~~~~~~-----~~~~~~~Sa~~~~gi~ 126 (186)
.+...+.... +++++.+||++|.|+.
T Consensus 138 ~~~~~~i~~~l~~~g~~~~~v~iipiSa~~g~n~~ 172 (195)
T cd01884 138 ELVEMEVRELLSKYGFDGDNTPIVRGSALKALEGD 172 (195)
T ss_pred HHHHHHHHHHHHHhcccccCCeEEEeeCccccCCC
Confidence 1222333333 3679999999999864
No 227
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.14 E-value=2.4e-10 Score=95.73 Aligned_cols=102 Identities=16% Similarity=0.218 Sum_probs=71.4
Q ss_pred CCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHH-------hHHHHHHHHHhhcCCC-CEEEEEeCCCC
Q 029875 23 NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYK-------NVPTWHRDLCRVCENI-PIVLCGNKVDV 94 (186)
Q Consensus 23 ~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~-------~i~~~~~~~~~~~~~~-p~ilv~nK~Dl 94 (186)
......+.|+||||+++|.......++.||++|+|+|+++ .+|+ .....+..+.. .++ ++|+++||+|+
T Consensus 81 ~~~~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~-G~~e~g~~~~~qT~eh~~~~~~--~gi~~iIV~vNKmD~ 157 (447)
T PLN00043 81 ETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTT-GGFEAGISKDGQTREHALLAFT--LGVKQMICCCNKMDA 157 (447)
T ss_pred cCCCEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEccc-CceecccCCCchHHHHHHHHHH--cCCCcEEEEEEcccC
Confidence 4456678889999999998888888999999999999997 3343 22222222211 356 47889999998
Q ss_pred CCcc--------cChHHHHHHHHcC-----CcEEEeccCCCCCchH
Q 029875 95 KNRQ--------VKAKQVTFHRKKN-----LQYYEISAKSNYNFEK 127 (186)
Q Consensus 95 ~~~~--------~~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~ 127 (186)
.... +..+...+++..+ ++++++||++|.|+.+
T Consensus 158 ~~~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 158 TTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred CchhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence 6211 1223345555555 5799999999999854
No 228
>PRK00098 GTPase RsgA; Reviewed
Probab=99.14 E-value=4.8e-10 Score=89.39 Aligned_cols=86 Identities=16% Similarity=0.147 Sum_probs=65.1
Q ss_pred cccCcEEEEEEeCCChhhHHh-HHHHHHHHHhhcCCCCEEEEEeCCCCCCc-ccChHHHHHHHHcCCcEEEeccCCCCCc
Q 029875 48 YIHGQCAIIMFDVTARLTYKN-VPTWHRDLCRVCENIPIVLCGNKVDVKNR-QVKAKQVTFHRKKNLQYYEISAKSNYNF 125 (186)
Q Consensus 48 ~~~ad~vilv~D~~~~~s~~~-i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 125 (186)
+.++|++++|+|++++.++.. +..|+..+.. .+.|+++|+||+|+.+. .............+++++.+||++|.|+
T Consensus 78 aaniD~vllV~d~~~p~~~~~~idr~L~~~~~--~~ip~iIVlNK~DL~~~~~~~~~~~~~~~~~g~~v~~vSA~~g~gi 155 (298)
T PRK00098 78 AANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA--NGIKPIIVLNKIDLLDDLEEARELLALYRAIGYDVLELSAKEGEGL 155 (298)
T ss_pred eecCCEEEEEEECCCCCCCHHHHHHHHHHHHH--CCCCEEEEEEhHHcCCCHHHHHHHHHHHHHCCCeEEEEeCCCCccH
Confidence 489999999999988765444 4678777654 47899999999999632 2112233445566789999999999999
Q ss_pred hHHHHHHHHH
Q 029875 126 EKPFLYLARK 135 (186)
Q Consensus 126 ~~l~~~l~~~ 135 (186)
++++..+...
T Consensus 156 ~~L~~~l~gk 165 (298)
T PRK00098 156 DELKPLLAGK 165 (298)
T ss_pred HHHHhhccCc
Confidence 9999887543
No 229
>PRK12740 elongation factor G; Reviewed
Probab=99.13 E-value=3e-10 Score=99.74 Aligned_cols=83 Identities=16% Similarity=0.218 Sum_probs=60.6
Q ss_pred ccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEE
Q 029875 7 GKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIV 86 (186)
Q Consensus 7 ~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~i 86 (186)
...|++..+..... ..+.+.||||||+..|...+..+++.+|++|+|+|++.........-| ..+.. .+.|++
T Consensus 44 rgiTi~~~~~~~~~----~~~~i~liDtPG~~~~~~~~~~~l~~aD~vllvvd~~~~~~~~~~~~~-~~~~~--~~~p~i 116 (668)
T PRK12740 44 RGISITSAATTCEW----KGHKINLIDTPGHVDFTGEVERALRVLDGAVVVVCAVGGVEPQTETVW-RQAEK--YGVPRI 116 (668)
T ss_pred cCCCeeeceEEEEE----CCEEEEEEECCCcHHHHHHHHHHHHHhCeEEEEEeCCCCcCHHHHHHH-HHHHH--cCCCEE
Confidence 44555544443333 457889999999988877788889999999999999987665543333 23332 378999
Q ss_pred EEEeCCCCCC
Q 029875 87 LCGNKVDVKN 96 (186)
Q Consensus 87 lv~nK~Dl~~ 96 (186)
+|+||+|+..
T Consensus 117 iv~NK~D~~~ 126 (668)
T PRK12740 117 IFVNKMDRAG 126 (668)
T ss_pred EEEECCCCCC
Confidence 9999999863
No 230
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.12 E-value=3.9e-10 Score=93.27 Aligned_cols=100 Identities=11% Similarity=-0.015 Sum_probs=65.1
Q ss_pred EECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEE-EEEeCCCCCCccc
Q 029875 21 FTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIV-LCGNKVDVKNRQV 99 (186)
Q Consensus 21 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~i-lv~nK~Dl~~~~~ 99 (186)
.++....++.||||||+++|.......+..+|++++|+|++.....+. ...+..+.. .+.|.+ +++||+|+.+...
T Consensus 69 ~~~~~~~~~~liDtpGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~qt-~e~l~~~~~--~gi~~iIvvvNK~Dl~~~~~ 145 (394)
T TIGR00485 69 EYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSATDGPMPQT-REHILLARQ--VGVPYIVVFLNKCDMVDDEE 145 (394)
T ss_pred EEcCCCEEEEEEECCchHHHHHHHHHHHhhCCEEEEEEECCCCCcHHH-HHHHHHHHH--cCCCEEEEEEEecccCCHHH
Confidence 334455678899999999886555555677899999999987432221 122222322 256755 6899999975321
Q ss_pred -C----hHHHHHHHHcC-----CcEEEeccCCCC
Q 029875 100 -K----AKQVTFHRKKN-----LQYYEISAKSNY 123 (186)
Q Consensus 100 -~----~~~~~~~~~~~-----~~~~~~Sa~~~~ 123 (186)
. .+...++..++ ++++.+||++|.
T Consensus 146 ~~~~~~~~i~~~l~~~~~~~~~~~ii~vSa~~g~ 179 (394)
T TIGR00485 146 LLELVEMEVRELLSEYDFPGDDTPIIRGSALKAL 179 (394)
T ss_pred HHHHHHHHHHHHHHhcCCCccCccEEECcccccc
Confidence 1 12334555554 689999999885
No 231
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=99.11 E-value=1e-09 Score=87.01 Aligned_cols=87 Identities=11% Similarity=0.070 Sum_probs=68.3
Q ss_pred cccccCcEEEEEEeCCChh-hHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCcccChHHHHHHHHcCCcEEEeccCCCCC
Q 029875 46 GYYIHGQCAIIMFDVTARL-TYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYN 124 (186)
Q Consensus 46 ~~~~~ad~vilv~D~~~~~-s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 124 (186)
..++++|++++|+|++++. ++..+.+|+..+.. .+.|+++|+||+|+.+.........+....+.+++.+||++|.|
T Consensus 74 ~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~--~~ip~iIVlNK~DL~~~~~~~~~~~~~~~~g~~v~~vSA~~g~g 151 (287)
T cd01854 74 VIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEA--AGIEPVIVLTKADLLDDEEEELELVEALALGYPVLAVSAKTGEG 151 (287)
T ss_pred eEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHH--cCCCEEEEEEHHHCCChHHHHHHHHHHHhCCCeEEEEECCCCcc
Confidence 3488999999999999887 88888889887765 37899999999999654211112233445678999999999999
Q ss_pred chHHHHHHHH
Q 029875 125 FEKPFLYLAR 134 (186)
Q Consensus 125 i~~l~~~l~~ 134 (186)
+++++..+..
T Consensus 152 i~~L~~~L~~ 161 (287)
T cd01854 152 LDELREYLKG 161 (287)
T ss_pred HHHHHhhhcc
Confidence 9999888764
No 232
>PRK12736 elongation factor Tu; Reviewed
Probab=99.11 E-value=5.8e-10 Score=92.21 Aligned_cols=113 Identities=12% Similarity=0.035 Sum_probs=72.9
Q ss_pred ECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCC-EEEEEeCCCCCCcc-c
Q 029875 22 TNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKNRQ-V 99 (186)
Q Consensus 22 ~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~-~ 99 (186)
+.....++.||||||+++|.......+..+|++++|+|++....-+. ...+..+.. .+.| +|+++||+|+.+.. .
T Consensus 70 ~~~~~~~i~~iDtPGh~~f~~~~~~~~~~~d~~llVvd~~~g~~~~t-~~~~~~~~~--~g~~~~IvviNK~D~~~~~~~ 146 (394)
T PRK12736 70 YETEKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQT-REHILLARQ--VGVPYLVVFLNKVDLVDDEEL 146 (394)
T ss_pred ecCCCcEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCchhH-HHHHHHHHH--cCCCEEEEEEEecCCcchHHH
Confidence 33445677899999999886655555678999999999987422221 222333333 2677 67899999987422 1
Q ss_pred C----hHHHHHHHHcC-----CcEEEeccCCCC--------CchHHHHHHHHHHh
Q 029875 100 K----AKQVTFHRKKN-----LQYYEISAKSNY--------NFEKPFLYLARKLA 137 (186)
Q Consensus 100 ~----~~~~~~~~~~~-----~~~~~~Sa~~~~--------gi~~l~~~l~~~i~ 137 (186)
. .+...+....+ ++++.+||++|. ++..+++.+...+.
T Consensus 147 ~~~i~~~i~~~l~~~~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp 201 (394)
T PRK12736 147 LELVEMEVRELLSEYDFPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIP 201 (394)
T ss_pred HHHHHHHHHHHHHHhCCCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCC
Confidence 1 12223333343 579999999983 46677777666554
No 233
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.10 E-value=3.3e-10 Score=80.21 Aligned_cols=111 Identities=17% Similarity=0.187 Sum_probs=73.3
Q ss_pred ccccccceEEEEEEEEEECCeEEEEEEEeCCCcc----ccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc
Q 029875 5 VWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQE----KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC 80 (186)
Q Consensus 5 ~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~----~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~ 80 (186)
..|.-|..+.|.. .++||||.. .|....-....+||.+++|.|++++.+... ..+....
T Consensus 26 ~~~~KTq~i~~~~------------~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ll~dat~~~~~~p-----P~fa~~f 88 (143)
T PF10662_consen 26 IRYKKTQAIEYYD------------NTIDTPGEYIENPRFYHALIVTAQDADVVLLLQDATEPRSVFP-----PGFASMF 88 (143)
T ss_pred CCcCccceeEecc------------cEEECChhheeCHHHHHHHHHHHhhCCEEEEEecCCCCCccCC-----chhhccc
Confidence 3455565555543 235999942 222222334458999999999998755332 1122222
Q ss_pred CCCCEEEEEeCCCCCCccc-ChHHHHHHHHcCC-cEEEeccCCCCCchHHHHHHH
Q 029875 81 ENIPIVLCGNKVDVKNRQV-KAKQVTFHRKKNL-QYYEISAKSNYNFEKPFLYLA 133 (186)
Q Consensus 81 ~~~p~ilv~nK~Dl~~~~~-~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~ 133 (186)
+.|+|-|+||+|+..... .....++.+..|+ ++|++|+.+|+||+++.+.|-
T Consensus 89 -~~pvIGVITK~Dl~~~~~~i~~a~~~L~~aG~~~if~vS~~~~eGi~eL~~~L~ 142 (143)
T PF10662_consen 89 -NKPVIGVITKIDLPSDDANIERAKKWLKNAGVKEIFEVSAVTGEGIEELKDYLE 142 (143)
T ss_pred -CCCEEEEEECccCccchhhHHHHHHHHHHcCCCCeEEEECCCCcCHHHHHHHHh
Confidence 589999999999983222 2334466666676 589999999999999998874
No 234
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=99.10 E-value=3.9e-10 Score=84.09 Aligned_cols=96 Identities=17% Similarity=0.128 Sum_probs=68.0
Q ss_pred cCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCcccChH-HHHHH-----HHcCC-
Q 029875 40 FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK-QVTFH-----RKKNL- 112 (186)
Q Consensus 40 ~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~-~~~~~-----~~~~~- 112 (186)
+..++..+++++|++++|+|+++... .|...+.....+.|+++|+||+|+........ ...+. +..+.
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~-----~~~~~l~~~~~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPG-----SLIPRLRLFGGNNPVILVGNKIDLLPKDKNLVRIKNWLRAKAAAGLGLK 98 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCC-----ccchhHHHhcCCCcEEEEEEchhcCCCCCCHHHHHHHHHHHHHhhcCCC
Confidence 46677889999999999999988642 12223322234789999999999975433222 22333 22333
Q ss_pred --cEEEeccCCCCCchHHHHHHHHHHhCCC
Q 029875 113 --QYYEISAKSNYNFEKPFLYLARKLAGDP 140 (186)
Q Consensus 113 --~~~~~Sa~~~~gi~~l~~~l~~~i~~~~ 140 (186)
+++.+||++|.|+++++..+.+.+....
T Consensus 99 ~~~i~~vSA~~~~gi~eL~~~l~~~l~~~~ 128 (190)
T cd01855 99 PKDVILISAKKGWGVEELINAIKKLAKKGG 128 (190)
T ss_pred cccEEEEECCCCCCHHHHHHHHHHHhhcCC
Confidence 6899999999999999999998875433
No 235
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=99.10 E-value=2.3e-10 Score=82.69 Aligned_cols=95 Identities=12% Similarity=0.048 Sum_probs=65.8
Q ss_pred CCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCcccChHHHHHHHHcCCcEEEeccC
Q 029875 41 GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAK 120 (186)
Q Consensus 41 ~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~ 120 (186)
+.+.+..+++||++|+|+|++++..... ..+...+.. .+.|+++|+||+|+.+.........+....+.+++.+||+
T Consensus 3 ~~~~~~i~~~aD~vl~V~D~~~~~~~~~-~~l~~~~~~--~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iSa~ 79 (156)
T cd01859 3 KRLVRRIIKESDVVLEVLDARDPELTRS-RKLERYVLE--LGKKLLIVLNKADLVPKEVLEKWKSIKESEGIPVVYVSAK 79 (156)
T ss_pred HHHHHHHHhhCCEEEEEeeCCCCcccCC-HHHHHHHHh--CCCcEEEEEEhHHhCCHHHHHHHHHHHHhCCCcEEEEEcc
Confidence 3456777889999999999988654332 122222221 3689999999999864321111112333456789999999
Q ss_pred CCCCchHHHHHHHHHHhC
Q 029875 121 SNYNFEKPFLYLARKLAG 138 (186)
Q Consensus 121 ~~~gi~~l~~~l~~~i~~ 138 (186)
+|.|++++++.+.+.+..
T Consensus 80 ~~~gi~~L~~~l~~~~~~ 97 (156)
T cd01859 80 ERLGTKILRRTIKELAKI 97 (156)
T ss_pred ccccHHHHHHHHHHHHhh
Confidence 999999999999988764
No 236
>PRK12289 GTPase RsgA; Reviewed
Probab=99.08 E-value=6.3e-10 Score=90.33 Aligned_cols=96 Identities=16% Similarity=0.134 Sum_probs=71.5
Q ss_pred ccCCccccccccCcEEEEEEeCCChh-hHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCcccChHHHHHHHHcCCcEEEe
Q 029875 39 KFGGLRDGYYIHGQCAIIMFDVTARL-TYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEI 117 (186)
Q Consensus 39 ~~~~~~~~~~~~ad~vilv~D~~~~~-s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 117 (186)
+-..+.+..++++|.+++|+|+.++. ++..+..|+..+.. .+.|++||+||+||................+++++.+
T Consensus 78 R~~~L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~--~~ip~ILVlNK~DLv~~~~~~~~~~~~~~~g~~v~~i 155 (352)
T PRK12289 78 RKTELDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAES--TGLEIVLCLNKADLVSPTEQQQWQDRLQQWGYQPLFI 155 (352)
T ss_pred cccceechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHH--CCCCEEEEEEchhcCChHHHHHHHHHHHhcCCeEEEE
Confidence 34456667799999999999999765 55566778776633 4799999999999964321122223334667899999
Q ss_pred ccCCCCCchHHHHHHHHHH
Q 029875 118 SAKSNYNFEKPFLYLARKL 136 (186)
Q Consensus 118 Sa~~~~gi~~l~~~l~~~i 136 (186)
||++|.|+++++..+...+
T Consensus 156 SA~tg~GI~eL~~~L~~ki 174 (352)
T PRK12289 156 SVETGIGLEALLEQLRNKI 174 (352)
T ss_pred EcCCCCCHHHHhhhhccce
Confidence 9999999999999887544
No 237
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.08 E-value=9.9e-10 Score=93.67 Aligned_cols=82 Identities=15% Similarity=0.106 Sum_probs=60.4
Q ss_pred ceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEe
Q 029875 11 IGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGN 90 (186)
Q Consensus 11 ig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~n 90 (186)
-|+.+......++...+++.||||||+..|.......++.+|++|+|+|+++...- ....+++.... .+.|+++++|
T Consensus 64 rgisi~~~~~~~~~~~~~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~-~t~~l~~~~~~--~~~PiivviN 140 (527)
T TIGR00503 64 RGISITTSVMQFPYRDCLVNLLDTPGHEDFSEDTYRTLTAVDNCLMVIDAAKGVET-RTRKLMEVTRL--RDTPIFTFMN 140 (527)
T ss_pred cCCcEEEEEEEEeeCCeEEEEEECCChhhHHHHHHHHHHhCCEEEEEEECCCCCCH-HHHHHHHHHHh--cCCCEEEEEE
Confidence 35555555555666778999999999998887777789999999999999874211 22344443332 4789999999
Q ss_pred CCCCC
Q 029875 91 KVDVK 95 (186)
Q Consensus 91 K~Dl~ 95 (186)
|+|+.
T Consensus 141 KiD~~ 145 (527)
T TIGR00503 141 KLDRD 145 (527)
T ss_pred Ccccc
Confidence 99974
No 238
>PRK09866 hypothetical protein; Provisional
Probab=99.07 E-value=8.2e-10 Score=94.47 Aligned_cols=128 Identities=16% Similarity=0.147 Sum_probs=81.1
Q ss_pred cccccceEEEEEEEEEECCeEEEEEEEeCCCcccc-----CCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc
Q 029875 6 WGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF-----GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC 80 (186)
Q Consensus 6 ~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~-----~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~ 80 (186)
++.|-|.+.+.+.... .....++.|.||||...- .......+.+||+|+||+|.+...+..+ ....+.+.+..
T Consensus 210 ~~~p~iev~f~hl~g~-l~~~~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D-eeIlk~Lkk~~ 287 (741)
T PRK09866 210 EHIPVIEVEFVHLAGL-ESYPGQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD-EEVREAILAVG 287 (741)
T ss_pred hcCceeeeeeeecccc-ccccCCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH-HHHHHHHHhcC
Confidence 4566666666654321 123457788899997542 1123347899999999999987544333 12333343332
Q ss_pred CCCCEEEEEeCCCCCCccc--ChHHHHHHH----HcC---CcEEEeccCCCCCchHHHHHHHHH
Q 029875 81 ENIPIVLCGNKVDVKNRQV--KAKQVTFHR----KKN---LQYYEISAKSNYNFEKPFLYLARK 135 (186)
Q Consensus 81 ~~~p~ilv~nK~Dl~~~~~--~~~~~~~~~----~~~---~~~~~~Sa~~~~gi~~l~~~l~~~ 135 (186)
.+.|+++|+||+|+.++.. ......+.. ..+ ..++.+||++|.|+++++..+..+
T Consensus 288 K~~PVILVVNKIDl~dreeddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~~ 351 (741)
T PRK09866 288 QSVPLYVLVNKFDQQDRNSDDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELANN 351 (741)
T ss_pred CCCCEEEEEEcccCCCcccchHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHhC
Confidence 2369999999999864222 122223322 112 259999999999999999998863
No 239
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.05 E-value=9.7e-10 Score=91.20 Aligned_cols=101 Identities=17% Similarity=0.162 Sum_probs=66.2
Q ss_pred eEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCcccC----
Q 029875 25 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK---- 100 (186)
Q Consensus 25 ~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~---- 100 (186)
...++.||||||+++|.......+..+|++|+|+|++....-+....|. .+ ......++++++||+|+.+....
T Consensus 78 ~~~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~-~~-~~~~~~~iivviNK~D~~~~~~~~~~~ 155 (406)
T TIGR02034 78 DKRKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHSY-IA-SLLGIRHVVLAVNKMDLVDYDEEVFEN 155 (406)
T ss_pred CCeEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHH-HH-HHcCCCcEEEEEEecccccchHHHHHH
Confidence 3457789999999998665556788999999999998653222211121 11 12123468999999998642211
Q ss_pred --hHHHHHHHHcC---CcEEEeccCCCCCchH
Q 029875 101 --AKQVTFHRKKN---LQYYEISAKSNYNFEK 127 (186)
Q Consensus 101 --~~~~~~~~~~~---~~~~~~Sa~~~~gi~~ 127 (186)
.+...+....+ ++++.+||++|.|+.+
T Consensus 156 i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 156 IKKDYLAFAEQLGFRDVTFIPLSALKGDNVVS 187 (406)
T ss_pred HHHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence 11122333333 4699999999999986
No 240
>PRK12735 elongation factor Tu; Reviewed
Probab=99.05 E-value=1.6e-09 Score=89.64 Aligned_cols=112 Identities=10% Similarity=-0.013 Sum_probs=71.9
Q ss_pred ECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEE-EEEeCCCCCCccc-
Q 029875 22 TNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIV-LCGNKVDVKNRQV- 99 (186)
Q Consensus 22 ~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~i-lv~nK~Dl~~~~~- 99 (186)
+.....++.|+||||++.|.......+..+|++++|+|+++...-+ ....+..+.. .+.|.+ +++||+|+.+...
T Consensus 70 ~~~~~~~i~~iDtPGh~~f~~~~~~~~~~aD~~llVvda~~g~~~q-t~e~l~~~~~--~gi~~iivvvNK~Dl~~~~~~ 146 (396)
T PRK12735 70 YETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQ-TREHILLARQ--VGVPYIVVFLNKCDMVDDEEL 146 (396)
T ss_pred EcCCCcEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCchh-HHHHHHHHHH--cCCCeEEEEEEecCCcchHHH
Confidence 3344557789999999888666666778899999999998743222 1223333332 367855 6799999974221
Q ss_pred C----hHHHHHHHHcC-----CcEEEeccCCCC----------CchHHHHHHHHHH
Q 029875 100 K----AKQVTFHRKKN-----LQYYEISAKSNY----------NFEKPFLYLARKL 136 (186)
Q Consensus 100 ~----~~~~~~~~~~~-----~~~~~~Sa~~~~----------gi~~l~~~l~~~i 136 (186)
. .+...+...++ ++++.+||++|. ++..+++.|...+
T Consensus 147 ~~~~~~ei~~~l~~~~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~ 202 (396)
T PRK12735 147 LELVEMEVRELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYI 202 (396)
T ss_pred HHHHHHHHHHHHHHcCCCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcC
Confidence 1 12223444443 679999999985 4556666665543
No 241
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.03 E-value=8.8e-10 Score=92.41 Aligned_cols=109 Identities=14% Similarity=0.156 Sum_probs=74.3
Q ss_pred EEEEEEeCCCccccCCccccccccCcEEEEEEeCCCh-hhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCcccChH---
Q 029875 27 IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTAR-LTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK--- 102 (186)
Q Consensus 27 ~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~-~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~--- 102 (186)
.++.|+||||++.|.......+..+|++++|+|++.. ..-+. ...+. +.....-.|++++.||+|+.+.....+
T Consensus 117 ~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT-~ehl~-i~~~lgi~~iIVvlNKiDlv~~~~~~~~~~ 194 (460)
T PTZ00327 117 RHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQT-SEHLA-AVEIMKLKHIIILQNKIDLVKEAQAQDQYE 194 (460)
T ss_pred ceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhh-HHHHH-HHHHcCCCcEEEEEecccccCHHHHHHHHH
Confidence 4678999999999876666667889999999999974 22221 12222 222222356899999999975222112
Q ss_pred -HHHHHHH---cCCcEEEeccCCCCCchHHHHHHHHHHh
Q 029875 103 -QVTFHRK---KNLQYYEISAKSNYNFEKPFLYLARKLA 137 (186)
Q Consensus 103 -~~~~~~~---~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 137 (186)
...+... .+.+++.+||++|.|++.|++.|...+.
T Consensus 195 ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp 233 (460)
T PTZ00327 195 EIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIP 233 (460)
T ss_pred HHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCC
Confidence 1222222 2568999999999999999999987554
No 242
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.03 E-value=2.6e-10 Score=81.52 Aligned_cols=127 Identities=14% Similarity=0.229 Sum_probs=95.7
Q ss_pred ccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc--CC
Q 029875 5 VWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--EN 82 (186)
Q Consensus 5 ~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~--~~ 82 (186)
.+|.||.........+ .+++++-+|.+|+..-+..|+.|+..++++++++|+.+.+.|.+.+.-++.+.... .+
T Consensus 46 ~qhvPTlHPTSE~l~I----g~m~ftt~DLGGH~qArr~wkdyf~~v~~iv~lvda~d~er~~es~~eld~ll~~e~la~ 121 (193)
T KOG0077|consen 46 GQHVPTLHPTSEELSI----GGMTFTTFDLGGHLQARRVWKDYFPQVDAIVYLVDAYDQERFAESKKELDALLSDESLAT 121 (193)
T ss_pred cccCCCcCCChHHhee----cCceEEEEccccHHHHHHHHHHHHhhhceeEeeeehhhHHHhHHHHHHHHHHHhHHHHhc
Confidence 3688888877776555 67788889999999999999999999999999999999999988776555554432 68
Q ss_pred CCEEEEEeCCCCCCcccChHHH---HHHHHcC--------------CcEEEeccCCCCCchHHHHHHHHH
Q 029875 83 IPIVLCGNKVDVKNRQVKAKQV---TFHRKKN--------------LQYYEISAKSNYNFEKPFLYLARK 135 (186)
Q Consensus 83 ~p~ilv~nK~Dl~~~~~~~~~~---~~~~~~~--------------~~~~~~Sa~~~~gi~~l~~~l~~~ 135 (186)
.|+++.+||+|.+.....++.. .+.+..+ +.++-||...+.|--+.|.++...
T Consensus 122 vp~lilgnKId~p~a~se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~evfmcsi~~~~gy~e~fkwl~qy 191 (193)
T KOG0077|consen 122 VPFLILGNKIDIPYAASEDELRFHLGLSNFTTGKGKVNLTDSNVRPLEVFMCSIVRKMGYGEGFKWLSQY 191 (193)
T ss_pred CcceeecccccCCCcccHHHHHHHHHHHHHhcccccccccCCCCCeEEEEEEEEEccCccceeeeehhhh
Confidence 9999999999998654332211 1111111 247788888888877888777654
No 243
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.03 E-value=3.5e-09 Score=87.22 Aligned_cols=122 Identities=16% Similarity=0.146 Sum_probs=86.5
Q ss_pred ccceEEEEEEEEEECCeEEEEEEEeCCCccccCCc--------cccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc
Q 029875 9 ATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL--------RDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC 80 (186)
Q Consensus 9 ~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~--------~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~ 80 (186)
|-.-.|+....+.++|.++++ .||+|.+..... .+..++.||.+++|+|.+.+.+-.+. ..+. ...
T Consensus 249 ~GTTRDviee~i~i~G~pv~l--~DTAGiRet~d~VE~iGIeRs~~~i~~ADlvL~v~D~~~~~~~~d~-~~~~---~~~ 322 (454)
T COG0486 249 AGTTRDVIEEDINLNGIPVRL--VDTAGIRETDDVVERIGIERAKKAIEEADLVLFVLDASQPLDKEDL-ALIE---LLP 322 (454)
T ss_pred CCCccceEEEEEEECCEEEEE--EecCCcccCccHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCchhhH-HHHH---hcc
Confidence 444467777788888877665 499998765443 34567899999999999986332221 1111 233
Q ss_pred CCCCEEEEEeCCCCCCcccChHHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCC
Q 029875 81 ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD 139 (186)
Q Consensus 81 ~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 139 (186)
.+.|+++|.||.|+......... ....+.+++.+||++|.|++.+.+.+...+...
T Consensus 323 ~~~~~i~v~NK~DL~~~~~~~~~---~~~~~~~~i~iSa~t~~Gl~~L~~~i~~~~~~~ 378 (454)
T COG0486 323 KKKPIIVVLNKADLVSKIELESE---KLANGDAIISISAKTGEGLDALREAIKQLFGKG 378 (454)
T ss_pred cCCCEEEEEechhcccccccchh---hccCCCceEEEEecCccCHHHHHHHHHHHHhhc
Confidence 57999999999999754332221 112245799999999999999999999888765
No 244
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.01 E-value=3.3e-09 Score=85.13 Aligned_cols=62 Identities=18% Similarity=0.267 Sum_probs=44.5
Q ss_pred CCCEEEEEeCCCCCCcccChHHHHHHHHc-CCcEEEeccCCCCCchHHHH-HHHHHHhCCCCcccc
Q 029875 82 NIPIVLCGNKVDVKNRQVKAKQVTFHRKK-NLQYYEISAKSNYNFEKPFL-YLARKLAGDPNLHFV 145 (186)
Q Consensus 82 ~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~gi~~l~~-~l~~~i~~~~~~~~~ 145 (186)
..|+|+++||+|+.......+ .+.... ...++.+||+.+.|+.++.+ .+.+.+.+.+.+...
T Consensus 214 ~KPvI~VlNK~Dl~~~~~~~~--~l~~~~~~~~iI~iSA~~e~~L~~L~~~~i~~~lPe~~~f~~~ 277 (318)
T cd01899 214 SKPMVIAANKADIPDAENNIS--KLRLKYPDEIVVPTSAEAELALRRAAKQGLIKYDPGDSDFEIT 277 (318)
T ss_pred CCcEEEEEEHHHccChHHHHH--HHHhhCCCCeEEEEeCcccccHHHHHHhhHHHhCCCCCCceec
Confidence 369999999999753221111 222222 45799999999999999998 699999887765443
No 245
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.00 E-value=1.9e-09 Score=82.65 Aligned_cols=127 Identities=17% Similarity=0.247 Sum_probs=81.6
Q ss_pred cccceEEEEEEEEEECCeEEEEEEEeCCCccccCC-----ccccccccCcEEEEEEeCCChhh---HHhHHHHHHHHHhh
Q 029875 8 KATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG-----LRDGYYIHGQCAIIMFDVTARLT---YKNVPTWHRDLCRV 79 (186)
Q Consensus 8 ~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~-----~~~~~~~~ad~vilv~D~~~~~s---~~~i~~~~~~~~~~ 79 (186)
.||+.++.....+ ...+.+++||.|||..+.. .+...++++.++|+|+|+.+.+- +......++.+.++
T Consensus 32 ~~T~~ve~~~v~~---~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~ 108 (232)
T PF04670_consen 32 EPTIDVEKSHVRF---LSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGVLIYVFDAQSDDYDEDLAYLSDCIEALRQY 108 (232)
T ss_dssp ----SEEEEEEEC---TTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESEEEEEEETT-STCHHHHHHHHHHHHHHHHH
T ss_pred CCcCCceEEEEec---CCCcEEEEEEcCCccccccccccccHHHHHhccCEEEEEEEcccccHHHHHHHHHHHHHHHHHh
Confidence 3777766554332 3667999999999976533 46778899999999999985442 33344566667777
Q ss_pred cCCCCEEEEEeCCCCCCcccC--------hHHHHHHHHcC---CcEEEeccCCCCCchHHHHHHHHHHhC
Q 029875 80 CENIPIVLCGNKVDVKNRQVK--------AKQVTFHRKKN---LQYYEISAKSNYNFEKPFLYLARKLAG 138 (186)
Q Consensus 80 ~~~~p~ilv~nK~Dl~~~~~~--------~~~~~~~~~~~---~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 138 (186)
.++..+.|...|+|+...... +.....+...+ +.++.+|.-+ ..+-+++..++..+.-
T Consensus 109 sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~TSI~D-~Sly~A~S~Ivq~LiP 177 (232)
T PF04670_consen 109 SPNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITFFLTSIWD-ESLYEAWSKIVQKLIP 177 (232)
T ss_dssp STT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEE-TTS-THHHHHHHHHHHTTST
T ss_pred CCCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEEEeccCcC-cHHHHHHHHHHHHHcc
Confidence 799999999999998642211 11223334444 6688888876 5888888888887753
No 246
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.00 E-value=1.1e-09 Score=92.55 Aligned_cols=102 Identities=18% Similarity=0.187 Sum_probs=65.5
Q ss_pred eEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCccc--ChH
Q 029875 25 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV--KAK 102 (186)
Q Consensus 25 ~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~--~~~ 102 (186)
...++.||||||++.|.......++.+|++|+|+|++....-+....|. +.......|+++++||+|+.+... ..+
T Consensus 105 ~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~--l~~~lg~~~iIvvvNKiD~~~~~~~~~~~ 182 (474)
T PRK05124 105 EKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSF--IATLLGIKHLVVAVNKMDLVDYSEEVFER 182 (474)
T ss_pred CCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHHH--HHHHhCCCceEEEEEeeccccchhHHHHH
Confidence 4457789999999888655555578999999999998653211111111 111112357899999999874221 111
Q ss_pred H----HHHHHHc----CCcEEEeccCCCCCchHH
Q 029875 103 Q----VTFHRKK----NLQYYEISAKSNYNFEKP 128 (186)
Q Consensus 103 ~----~~~~~~~----~~~~~~~Sa~~~~gi~~l 128 (186)
. ..+.... ..+++.+||++|.|+.++
T Consensus 183 i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~ 216 (474)
T PRK05124 183 IREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ 216 (474)
T ss_pred HHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence 1 1222332 367999999999999865
No 247
>PRK13768 GTPase; Provisional
Probab=98.97 E-value=2.2e-09 Score=83.69 Aligned_cols=111 Identities=14% Similarity=0.158 Sum_probs=72.9
Q ss_pred EEEEEeCCCcccc---CCcccccccc-----CcEEEEEEeCCChhhHHhH--HHHHHHHHhhcCCCCEEEEEeCCCCCCc
Q 029875 28 RFYCWDTAGQEKF---GGLRDGYYIH-----GQCAIIMFDVTARLTYKNV--PTWHRDLCRVCENIPIVLCGNKVDVKNR 97 (186)
Q Consensus 28 ~l~l~Dt~G~~~~---~~~~~~~~~~-----ad~vilv~D~~~~~s~~~i--~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 97 (186)
.+.+|||||+... +..+..+++. ++++++|+|++...+..+. ..|+........+.|+++|+||+|+.+.
T Consensus 98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~~~~ 177 (253)
T PRK13768 98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADLLSE 177 (253)
T ss_pred CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhhcCc
Confidence 5779999998663 3344333333 8999999999764433222 2333333322347999999999998753
Q ss_pred ccChHHHH----------------------------HHHHcC--CcEEEeccCCCCCchHHHHHHHHHHhC
Q 029875 98 QVKAKQVT----------------------------FHRKKN--LQYYEISAKSNYNFEKPFLYLARKLAG 138 (186)
Q Consensus 98 ~~~~~~~~----------------------------~~~~~~--~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 138 (186)
........ ..+..+ .+++.+|++++.|++++++++.+.+..
T Consensus 178 ~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~~ 248 (253)
T PRK13768 178 EELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFCG 248 (253)
T ss_pred hhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcCC
Confidence 22211111 112223 578999999999999999999888743
No 248
>COG1160 Predicted GTPases [General function prediction only]
Probab=98.97 E-value=2.3e-08 Score=82.24 Aligned_cols=121 Identities=17% Similarity=0.149 Sum_probs=82.0
Q ss_pred EEEEEEEEEECCeEEEEEEEeCCCccccCCcc-----------ccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcC
Q 029875 13 VEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLR-----------DGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE 81 (186)
Q Consensus 13 ~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~-----------~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~ 81 (186)
.|.....+.++++++.+ +||+|.++-.... -..+..|++|++|+|++.+.+-++. +....+.+ .
T Consensus 214 RD~I~~~~e~~~~~~~l--iDTAGiRrk~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~~~~~qD~-~ia~~i~~--~ 288 (444)
T COG1160 214 RDSIDIEFERDGRKYVL--IDTAGIRRKGKITESVEKYSVARTLKAIERADVVLLVIDATEGISEQDL-RIAGLIEE--A 288 (444)
T ss_pred ccceeeeEEECCeEEEE--EECCCCCcccccccceEEEeehhhHhHHhhcCEEEEEEECCCCchHHHH-HHHHHHHH--c
Confidence 45566677777886665 5999976533322 2345689999999999998765542 22333333 4
Q ss_pred CCCEEEEEeCCCCCCc--ccChHHH-HHHHHc----CCcEEEeccCCCCCchHHHHHHHHHHhC
Q 029875 82 NIPIVLCGNKVDVKNR--QVKAKQV-TFHRKK----NLQYYEISAKSNYNFEKPFLYLARKLAG 138 (186)
Q Consensus 82 ~~p~ilv~nK~Dl~~~--~~~~~~~-~~~~~~----~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 138 (186)
+.+++||.||+|+.+. ....+.. ++-..+ ..+++.+||++|.|+..+|+.+......
T Consensus 289 g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~iSA~~~~~i~~l~~~i~~~~~~ 352 (444)
T COG1160 289 GRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVFISALTGQGLDKLFEAIKEIYEC 352 (444)
T ss_pred CCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEEEEecCCCChHHHHHHHHHHHHH
Confidence 7899999999998754 1112221 222222 3589999999999999999998876643
No 249
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=98.96 E-value=2.2e-09 Score=90.10 Aligned_cols=116 Identities=15% Similarity=0.183 Sum_probs=92.2
Q ss_pred eEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHH-HHHHHHHhhc---CCCCEEEEEeCCCCCCcccC
Q 029875 25 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVC---ENIPIVLCGNKVDVKNRQVK 100 (186)
Q Consensus 25 ~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~-~~~~~~~~~~---~~~p~ilv~nK~Dl~~~~~~ 100 (186)
..+-..|.||+....-+.....-++.|++++++|+.+++.+.+.+. .|+..+++.. .++|+|+||||+|.......
T Consensus 54 e~vpt~ivD~ss~~~~~~~l~~EirkA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~ 133 (625)
T KOG1707|consen 54 ENVPTSIVDTSSDSDDRLCLRKEIRKADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENN 133 (625)
T ss_pred CcCceEEEecccccchhHHHHHHHhhcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCcccccc
Confidence 4455778899866555555577789999999999999999999985 8999999987 68999999999999753222
Q ss_pred ---hHHHHHHHHcC-C-cEEEeccCCCCCchHHHHHHHHHHhCCC
Q 029875 101 ---AKQVTFHRKKN-L-QYYEISAKSNYNFEKPFLYLARKLAGDP 140 (186)
Q Consensus 101 ---~~~~~~~~~~~-~-~~~~~Sa~~~~gi~~l~~~l~~~i~~~~ 140 (186)
.+...++..+. + .+++|||++-.++.++|...-+.+..-.
T Consensus 134 s~e~~~~pim~~f~EiEtciecSA~~~~n~~e~fYyaqKaVihPt 178 (625)
T KOG1707|consen 134 SDEVNTLPIMIAFAEIETCIECSALTLANVSELFYYAQKAVIHPT 178 (625)
T ss_pred chhHHHHHHHHHhHHHHHHHhhhhhhhhhhHhhhhhhhheeeccC
Confidence 22344555543 3 4999999999999999999998887654
No 250
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=98.94 E-value=8.6e-09 Score=84.74 Aligned_cols=126 Identities=13% Similarity=0.159 Sum_probs=92.6
Q ss_pred ceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEe
Q 029875 11 IGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGN 90 (186)
Q Consensus 11 ig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~n 90 (186)
=|+.+..+...++-+.+++.|.||||+..|..-....++.+|+|++++|+....-- +.+..+++.... +.+-|+|+|
T Consensus 52 RGITILaKnTav~~~~~~INIvDTPGHADFGGEVERvl~MVDgvlLlVDA~EGpMP-QTrFVlkKAl~~--gL~PIVVvN 128 (603)
T COG1217 52 RGITILAKNTAVNYNGTRINIVDTPGHADFGGEVERVLSMVDGVLLLVDASEGPMP-QTRFVLKKALAL--GLKPIVVIN 128 (603)
T ss_pred cCcEEEeccceeecCCeEEEEecCCCcCCccchhhhhhhhcceEEEEEEcccCCCC-chhhhHHHHHHc--CCCcEEEEe
Confidence 36677778887877778999999999999999999999999999999999875321 223334444433 677888899
Q ss_pred CCCCCCcccC---hHHHHHHH-------HcCCcEEEeccCCCC----------CchHHHHHHHHHHhCC
Q 029875 91 KVDVKNRQVK---AKQVTFHR-------KKNLQYYEISAKSNY----------NFEKPFLYLARKLAGD 139 (186)
Q Consensus 91 K~Dl~~~~~~---~~~~~~~~-------~~~~~~~~~Sa~~~~----------gi~~l~~~l~~~i~~~ 139 (186)
|+|.+..... .+...+.- .+.+|++..|++.|. ++.-+|+.+++++..-
T Consensus 129 KiDrp~Arp~~Vvd~vfDLf~~L~A~deQLdFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P 197 (603)
T COG1217 129 KIDRPDARPDEVVDEVFDLFVELGATDEQLDFPIVYASARNGTASLDPEDEADDMAPLFETILDHVPAP 197 (603)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHhCCChhhCCCcEEEeeccCceeccCccccccchhHHHHHHHHhCCCC
Confidence 9999864432 22233322 335789999999884 5777888888887543
No 251
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=98.94 E-value=7.1e-09 Score=82.60 Aligned_cols=107 Identities=22% Similarity=0.242 Sum_probs=75.0
Q ss_pred EEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHH--HHHHHHHhhcCCCCEEEEEeC
Q 029875 14 EVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVP--TWHRDLCRVCENIPIVLCGNK 91 (186)
Q Consensus 14 ~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~--~~~~~~~~~~~~~p~ilv~nK 91 (186)
|+-.+-|.. .+-++.+-||||++.|....-.-.+.||++|+++|+...-. ++.+ .++..+. .-..+++..||
T Consensus 75 DVAYRyFsT--~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gvl-~QTrRHs~I~sLL---GIrhvvvAVNK 148 (431)
T COG2895 75 DVAYRYFST--EKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGVL-EQTRRHSFIASLL---GIRHVVVAVNK 148 (431)
T ss_pred EEEeeeccc--ccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhhH-HHhHHHHHHHHHh---CCcEEEEEEee
Confidence 444334433 44456666999999998887888899999999999965321 2211 2333333 34679999999
Q ss_pred CCCCC------cccChHHHHHHHHcCC---cEEEeccCCCCCch
Q 029875 92 VDVKN------RQVKAKQVTFHRKKNL---QYYEISAKSNYNFE 126 (186)
Q Consensus 92 ~Dl~~------~~~~~~~~~~~~~~~~---~~~~~Sa~~~~gi~ 126 (186)
+||.+ ..+..+...|+..+++ .++++||..|.||-
T Consensus 149 mDLvdy~e~~F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~ 192 (431)
T COG2895 149 MDLVDYSEEVFEAIVADYLAFAAQLGLKDVRFIPISALLGDNVV 192 (431)
T ss_pred ecccccCHHHHHHHHHHHHHHHHHcCCCcceEEechhccCCccc
Confidence 99986 2233445678888875 59999999999864
No 252
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.94 E-value=2.4e-09 Score=87.52 Aligned_cols=94 Identities=17% Similarity=0.208 Sum_probs=71.9
Q ss_pred ccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCcccChH-HH----HHHHHcC
Q 029875 37 QEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK-QV----TFHRKKN 111 (186)
Q Consensus 37 ~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~-~~----~~~~~~~ 111 (186)
.+.|..+...++++++++++|+|+.+.. ..|...+.+...+.|+++|+||+|+.++....+ .. ++++..+
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~-----~s~~~~l~~~~~~~piilV~NK~DLl~k~~~~~~~~~~l~~~~k~~g 124 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFE-----GSLIPELKRFVGGNPVLLVGNKIDLLPKSVNLSKIKEWMKKRAKELG 124 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCC-----CCccHHHHHHhCCCCEEEEEEchhhCCCCCCHHHHHHHHHHHHHHcC
Confidence 4577788888899999999999997753 246666666556789999999999976443322 22 2355566
Q ss_pred C---cEEEeccCCCCCchHHHHHHHHH
Q 029875 112 L---QYYEISAKSNYNFEKPFLYLARK 135 (186)
Q Consensus 112 ~---~~~~~Sa~~~~gi~~l~~~l~~~ 135 (186)
+ .++.+||++|.|+++++..+.+.
T Consensus 125 ~~~~~i~~vSAk~g~gv~eL~~~l~~~ 151 (360)
T TIGR03597 125 LKPVDIILVSAKKGNGIDELLDKIKKA 151 (360)
T ss_pred CCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence 6 48999999999999999999764
No 253
>COG1160 Predicted GTPases [General function prediction only]
Probab=98.93 E-value=5.6e-09 Score=85.80 Aligned_cols=115 Identities=16% Similarity=0.027 Sum_probs=77.7
Q ss_pred EEEEEEEEECCeEEEEEEEeCCCccccC---------CccccccccCcEEEEEEeCCChhhHH--hHHHHHHHHHhhcCC
Q 029875 14 EVHPLDFFTNCGKIRFYCWDTAGQEKFG---------GLRDGYYIHGQCAIIMFDVTARLTYK--NVPTWHRDLCRVCEN 82 (186)
Q Consensus 14 ~~~~~~~~~~~~~~~l~l~Dt~G~~~~~---------~~~~~~~~~ad~vilv~D~~~~~s~~--~i~~~~~~~~~~~~~ 82 (186)
|-......+.+.. +.++||||.+... ......+..||++|||+|+....+-+ .+.+|+. ..+
T Consensus 40 Dr~y~~~~~~~~~--f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~eADvilfvVD~~~Git~~D~~ia~~Lr-----~~~ 112 (444)
T COG1160 40 DRIYGDAEWLGRE--FILIDTGGLDDGDEDELQELIREQALIAIEEADVILFVVDGREGITPADEEIAKILR-----RSK 112 (444)
T ss_pred CCccceeEEcCce--EEEEECCCCCcCCchHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHH-----hcC
Confidence 3333344455555 6777999987433 23445678999999999998754433 2333333 246
Q ss_pred CCEEEEEeCCCCCCcccChHHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHh
Q 029875 83 IPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLA 137 (186)
Q Consensus 83 ~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 137 (186)
.|+++|+||+|-... .....++..-.--+.+.+||..|.|+.+++++++..+.
T Consensus 113 kpviLvvNK~D~~~~--e~~~~efyslG~g~~~~ISA~Hg~Gi~dLld~v~~~l~ 165 (444)
T COG1160 113 KPVILVVNKIDNLKA--EELAYEFYSLGFGEPVPISAEHGRGIGDLLDAVLELLP 165 (444)
T ss_pred CCEEEEEEcccCchh--hhhHHHHHhcCCCCceEeehhhccCHHHHHHHHHhhcC
Confidence 999999999996411 11122333322247999999999999999999999985
No 254
>PRK12288 GTPase RsgA; Reviewed
Probab=98.93 E-value=6.5e-09 Score=84.39 Aligned_cols=87 Identities=14% Similarity=0.124 Sum_probs=68.0
Q ss_pred cccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCccc---ChHHHHHHHHcCCcEEEeccCCCCC
Q 029875 48 YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV---KAKQVTFHRKKNLQYYEISAKSNYN 124 (186)
Q Consensus 48 ~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~---~~~~~~~~~~~~~~~~~~Sa~~~~g 124 (186)
..++|.+++|++.+...++..+..|+..+.. .+.|.+||+||+|+.+... ...........+++++.+||++|.|
T Consensus 118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~--~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~tg~G 195 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNIIDRYLVACET--LGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSHTGEG 195 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHHHHHHHHHHh--cCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCCCCcC
Confidence 4679999999999888899999999875543 4789999999999975321 1122233345678999999999999
Q ss_pred chHHHHHHHHHH
Q 029875 125 FEKPFLYLARKL 136 (186)
Q Consensus 125 i~~l~~~l~~~i 136 (186)
+++++..+...+
T Consensus 196 ideL~~~L~~ki 207 (347)
T PRK12288 196 LEELEAALTGRI 207 (347)
T ss_pred HHHHHHHHhhCC
Confidence 999999987644
No 255
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=98.93 E-value=4.9e-09 Score=82.46 Aligned_cols=95 Identities=20% Similarity=0.145 Sum_probs=64.0
Q ss_pred eEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCcccChHHH
Q 029875 25 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQV 104 (186)
Q Consensus 25 ~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~ 104 (186)
...++.||||||...|...+...++.+|++|+|+|+++...-+. ...+..+.. .+.|+++++||+|+.+........
T Consensus 62 ~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVVDa~~g~~~~t-~~~~~~~~~--~~~p~ivviNK~D~~~a~~~~~~~ 138 (270)
T cd01886 62 KDHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVAGVEPQT-ETVWRQADR--YNVPRIAFVNKMDRTGADFFRVVE 138 (270)
T ss_pred CCEEEEEEECCCcHHHHHHHHHHHHHcCEEEEEEECCCCCCHHH-HHHHHHHHH--cCCCEEEEEECCCCCCCCHHHHHH
Confidence 35678889999998888888889999999999999987543222 233333333 368999999999987533211122
Q ss_pred HHHHHcCC----cEEEeccCCC
Q 029875 105 TFHRKKNL----QYYEISAKSN 122 (186)
Q Consensus 105 ~~~~~~~~----~~~~~Sa~~~ 122 (186)
++...++. ..+.+|+..+
T Consensus 139 ~l~~~l~~~~~~~~~Pisa~~~ 160 (270)
T cd01886 139 QIREKLGANPVPLQLPIGEEDD 160 (270)
T ss_pred HHHHHhCCCceEEEeccccCCC
Confidence 33333332 2677888754
No 256
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.90 E-value=1.9e-08 Score=79.10 Aligned_cols=105 Identities=14% Similarity=0.165 Sum_probs=75.8
Q ss_pred EEEEeCCCccccCC----cccccc---ccCcEEEEEEeCCCh---hhHHhHHHHHHHHHhhc---CCCCEEEEEeCCCCC
Q 029875 29 FYCWDTAGQEKFGG----LRDGYY---IHGQCAIIMFDVTAR---LTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVK 95 (186)
Q Consensus 29 l~l~Dt~G~~~~~~----~~~~~~---~~ad~vilv~D~~~~---~s~~~i~~~~~~~~~~~---~~~p~ilv~nK~Dl~ 95 (186)
+.+=|.||.-.-.. +.-.|+ ..+.+.+||+|.+.. ..++.+.....++..+. .+.|.+||+||+|++
T Consensus 246 ~tVADiPGiI~GAh~nkGlG~~FLrHiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~ 325 (366)
T KOG1489|consen 246 ITVADIPGIIEGAHMNKGLGYKFLRHIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLP 325 (366)
T ss_pred eEeccCccccccccccCcccHHHHHHHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCch
Confidence 66779999654333 333444 469999999999998 77777766666655543 689999999999996
Q ss_pred CcccChHHHHHHHHcCC-cEEEeccCCCCCchHHHHHHHH
Q 029875 96 NRQVKAKQVTFHRKKNL-QYYEISAKSNYNFEKPFLYLAR 134 (186)
Q Consensus 96 ~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~ 134 (186)
+.+.. ....+++...- .++.+||++++|+.+++..|.+
T Consensus 326 eae~~-~l~~L~~~lq~~~V~pvsA~~~egl~~ll~~lr~ 364 (366)
T KOG1489|consen 326 EAEKN-LLSSLAKRLQNPHVVPVSAKSGEGLEELLNGLRE 364 (366)
T ss_pred hHHHH-HHHHHHHHcCCCcEEEeeeccccchHHHHHHHhh
Confidence 33211 12355665544 4999999999999999988764
No 257
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=98.89 E-value=9.9e-09 Score=80.63 Aligned_cols=110 Identities=14% Similarity=0.160 Sum_probs=75.4
Q ss_pred eEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCcccChHHH
Q 029875 25 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQV 104 (186)
Q Consensus 25 ~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~ 104 (186)
..+.+.+|||||...|...+..+++.+|++++|+|+++........-|. .+.. .+.|+++++||+|+..........
T Consensus 62 ~~~~i~liDtPG~~~f~~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~-~~~~--~~~p~iivvNK~D~~~~~~~~~~~ 138 (268)
T cd04170 62 KGHKINLIDTPGYADFVGETRAALRAADAALVVVSAQSGVEVGTEKLWE-FADE--AGIPRIIFINKMDRERADFDKTLA 138 (268)
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHH-HHHH--cCCCEEEEEECCccCCCCHHHHHH
Confidence 4467889999999888777888999999999999999865544333332 2222 368999999999987653322233
Q ss_pred HHHHHcCCcEE--EeccCCCCCchHHHHHHHHHHh
Q 029875 105 TFHRKKNLQYY--EISAKSNYNFEKPFLYLARKLA 137 (186)
Q Consensus 105 ~~~~~~~~~~~--~~Sa~~~~gi~~l~~~l~~~i~ 137 (186)
.+...++.+++ .+...+|.|+..+.+.+.....
T Consensus 139 ~l~~~~~~~~~~~~ip~~~~~~~~~~vd~~~~~~~ 173 (268)
T cd04170 139 ALQEAFGRPVVPLQLPIGEGDDFKGVVDLLTEKAY 173 (268)
T ss_pred HHHHHhCCCeEEEEecccCCCceeEEEEcccCEEE
Confidence 44455565544 4456777777666665554443
No 258
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=98.87 E-value=1.1e-08 Score=89.34 Aligned_cols=101 Identities=22% Similarity=0.160 Sum_probs=64.9
Q ss_pred eEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCcc--cCh-
Q 029875 25 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ--VKA- 101 (186)
Q Consensus 25 ~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~--~~~- 101 (186)
...++.|+||||++.|.......+..+|++++|+|++....-+.. ..+..+... ...|++|++||+|+.+.. ...
T Consensus 102 ~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~-e~~~~~~~~-~~~~iivvvNK~D~~~~~~~~~~~ 179 (632)
T PRK05506 102 PKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTR-RHSFIASLL-GIRHVVLAVNKMDLVDYDQEVFDE 179 (632)
T ss_pred CCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCH-HHHHHHHHh-CCCeEEEEEEecccccchhHHHHH
Confidence 344667899999988865555567899999999999765322211 111112221 235788999999996411 111
Q ss_pred ---HHHHHHHHcC---CcEEEeccCCCCCchH
Q 029875 102 ---KQVTFHRKKN---LQYYEISAKSNYNFEK 127 (186)
Q Consensus 102 ---~~~~~~~~~~---~~~~~~Sa~~~~gi~~ 127 (186)
+...+....+ .+++.+||++|.|+.+
T Consensus 180 i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 180 IVADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred HHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 1123334444 4699999999999985
No 259
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=98.86 E-value=1.8e-08 Score=84.56 Aligned_cols=103 Identities=18% Similarity=0.171 Sum_probs=66.8
Q ss_pred CCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChh---hH---HhHHHHHHHHHhhcCCCC-EEEEEeCCCCC
Q 029875 23 NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARL---TY---KNVPTWHRDLCRVCENIP-IVLCGNKVDVK 95 (186)
Q Consensus 23 ~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~---s~---~~i~~~~~~~~~~~~~~p-~ilv~nK~Dl~ 95 (186)
......+.|+||||+.+|.......+..+|++|+|+|++... .| .....-+..+.. .++| +|++.||+|..
T Consensus 81 ~~~~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~--~gi~~iiv~vNKmD~~ 158 (446)
T PTZ00141 81 ETPKYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFT--LGVKQMIVCINKMDDK 158 (446)
T ss_pred ccCCeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHH--cCCCeEEEEEEccccc
Confidence 345667888899999999777777788999999999998642 11 112221222222 2555 67999999953
Q ss_pred Cc----c----cChHHHHHHHHc-----CCcEEEeccCCCCCchH
Q 029875 96 NR----Q----VKAKQVTFHRKK-----NLQYYEISAKSNYNFEK 127 (186)
Q Consensus 96 ~~----~----~~~~~~~~~~~~-----~~~~~~~Sa~~~~gi~~ 127 (186)
.. . +..+...+.... +++++.+|+.+|.|+.+
T Consensus 159 ~~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 159 TVNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred cchhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 21 1 112222333332 35799999999999864
No 260
>CHL00071 tufA elongation factor Tu
Probab=98.85 E-value=1.8e-08 Score=83.72 Aligned_cols=98 Identities=13% Similarity=-0.001 Sum_probs=65.1
Q ss_pred eEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCC-EEEEEeCCCCCCcccC---
Q 029875 25 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKNRQVK--- 100 (186)
Q Consensus 25 ~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~~--- 100 (186)
...++.|.||||+..|.......+..+|++++|+|+.....-+ ....+..+.. .+.| +|++.||+|+.+....
T Consensus 73 ~~~~~~~iDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~~q-t~~~~~~~~~--~g~~~iIvvvNK~D~~~~~~~~~~ 149 (409)
T CHL00071 73 ENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQ-TKEHILLAKQ--VGVPNIVVFLNKEDQVDDEELLEL 149 (409)
T ss_pred CCeEEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCCcHH-HHHHHHHHHH--cCCCEEEEEEEccCCCCHHHHHHH
Confidence 4456778899999888666666778999999999998643222 2233333333 2678 7789999999753221
Q ss_pred --hHHHHHHHHcC-----CcEEEeccCCCCCc
Q 029875 101 --AKQVTFHRKKN-----LQYYEISAKSNYNF 125 (186)
Q Consensus 101 --~~~~~~~~~~~-----~~~~~~Sa~~~~gi 125 (186)
.+...+.+..+ ++++.+||.+|.|+
T Consensus 150 ~~~~l~~~l~~~~~~~~~~~ii~~Sa~~g~n~ 181 (409)
T CHL00071 150 VELEVRELLSKYDFPGDDIPIVSGSALLALEA 181 (409)
T ss_pred HHHHHHHHHHHhCCCCCcceEEEcchhhcccc
Confidence 12223333333 67999999998753
No 261
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=98.85 E-value=3.3e-08 Score=78.01 Aligned_cols=112 Identities=13% Similarity=0.123 Sum_probs=73.3
Q ss_pred cccccceEEEEEEEEEECCeEEEEEEEeCCCcccc--------------------------CCccccccc--cCcEEEEE
Q 029875 6 WGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF--------------------------GGLRDGYYI--HGQCAIIM 57 (186)
Q Consensus 6 ~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~--------------------------~~~~~~~~~--~ad~vilv 57 (186)
.+.+|++++.....+..+|..+++.+|||||...+ ...+...+. .+|+|+++
T Consensus 42 ~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~ 121 (276)
T cd01850 42 HIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDCWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYF 121 (276)
T ss_pred ccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhhHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEE
Confidence 36788888888888888899999999999994322 112223444 47888888
Q ss_pred EeCCChhhHHhHHHH-HHHHHhhcCCCCEEEEEeCCCCCCcc----cChHHHHHHHHcCCcEEEeccCC
Q 029875 58 FDVTARLTYKNVPTW-HRDLCRVCENIPIVLCGNKVDVKNRQ----VKAKQVTFHRKKNLQYYEISAKS 121 (186)
Q Consensus 58 ~D~~~~~s~~~i~~~-~~~~~~~~~~~p~ilv~nK~Dl~~~~----~~~~~~~~~~~~~~~~~~~Sa~~ 121 (186)
++.+... . ..| ++.+.......|+++|+||+|+.... ......+.+..++++++.+....
T Consensus 122 i~~~~~~-l---~~~D~~~lk~l~~~v~vi~VinK~D~l~~~e~~~~k~~i~~~l~~~~i~~~~~~~~~ 186 (276)
T cd01850 122 IEPTGHG-L---KPLDIEFMKRLSKRVNIIPVIAKADTLTPEELKEFKQRIMEDIEEHNIKIYKFPEDE 186 (276)
T ss_pred EeCCCCC-C---CHHHHHHHHHHhccCCEEEEEECCCcCCHHHHHHHHHHHHHHHHHcCCceECCCCCc
Confidence 8877521 1 112 22222223368999999999985421 12223466778888888776543
No 262
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=98.84 E-value=1.2e-08 Score=90.03 Aligned_cols=95 Identities=18% Similarity=0.130 Sum_probs=65.5
Q ss_pred eEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCcccChHHH
Q 029875 25 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQV 104 (186)
Q Consensus 25 ~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~ 104 (186)
...++.||||||+.+|...+...++.+|++|+|+|+++....+.. .++..+.. .+.|+++++||+|+..........
T Consensus 73 ~~~~i~liDTPG~~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~-~~~~~~~~--~~~p~ivviNK~D~~~~~~~~~~~ 149 (689)
T TIGR00484 73 KGHRINIIDTPGHVDFTVEVERSLRVLDGAVAVLDAVGGVQPQSE-TVWRQANR--YEVPRIAFVNKMDKTGANFLRVVN 149 (689)
T ss_pred CCeEEEEEECCCCcchhHHHHHHHHHhCEEEEEEeCCCCCChhHH-HHHHHHHH--cCCCEEEEEECCCCCCCCHHHHHH
Confidence 456888999999998888888899999999999999986555433 23333333 368999999999997543222222
Q ss_pred HHHHHcCC----cEEEeccCCC
Q 029875 105 TFHRKKNL----QYYEISAKSN 122 (186)
Q Consensus 105 ~~~~~~~~----~~~~~Sa~~~ 122 (186)
.+...++. ..+.+|+..+
T Consensus 150 ~i~~~l~~~~~~~~ipis~~~~ 171 (689)
T TIGR00484 150 QIKQRLGANAVPIQLPIGAEDN 171 (689)
T ss_pred HHHHHhCCCceeEEeccccCCC
Confidence 33343332 2456676655
No 263
>PRK00049 elongation factor Tu; Reviewed
Probab=98.84 E-value=3.2e-08 Score=81.94 Aligned_cols=111 Identities=11% Similarity=-0.018 Sum_probs=70.3
Q ss_pred ECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEE-EEEeCCCCCCccc-
Q 029875 22 TNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIV-LCGNKVDVKNRQV- 99 (186)
Q Consensus 22 ~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~i-lv~nK~Dl~~~~~- 99 (186)
+.....++.|.||||+.+|.......+..||++++|+|++....-+ ....+..+.. .+.|.+ ++.||+|+.+...
T Consensus 70 ~~~~~~~i~~iDtPG~~~f~~~~~~~~~~aD~~llVVDa~~g~~~q-t~~~~~~~~~--~g~p~iiVvvNK~D~~~~~~~ 146 (396)
T PRK00049 70 YETEKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQ-TREHILLARQ--VGVPYIVVFLNKCDMVDDEEL 146 (396)
T ss_pred EcCCCeEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCchH-HHHHHHHHHH--cCCCEEEEEEeecCCcchHHH
Confidence 3334456778899999888666667788999999999998753222 2233333333 267876 6899999974211
Q ss_pred C----hHHHHHHHHc-----CCcEEEeccCCCC----------CchHHHHHHHHH
Q 029875 100 K----AKQVTFHRKK-----NLQYYEISAKSNY----------NFEKPFLYLARK 135 (186)
Q Consensus 100 ~----~~~~~~~~~~-----~~~~~~~Sa~~~~----------gi~~l~~~l~~~ 135 (186)
. .+...+.... +++++.+||++|. |+..+++.|...
T Consensus 147 ~~~~~~~i~~~l~~~~~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~ 201 (396)
T PRK00049 147 LELVEMEVRELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSY 201 (396)
T ss_pred HHHHHHHHHHHHHhcCCCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhc
Confidence 1 1122233332 3689999999875 344555555543
No 264
>PLN03126 Elongation factor Tu; Provisional
Probab=98.82 E-value=1.9e-08 Score=84.94 Aligned_cols=98 Identities=11% Similarity=-0.022 Sum_probs=66.0
Q ss_pred eEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCC-EEEEEeCCCCCCccc-Ch-
Q 029875 25 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKNRQV-KA- 101 (186)
Q Consensus 25 ~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~-~~- 101 (186)
...++.||||||+++|.......+..+|++++|+|+.+...-+ ...++..+.. .++| +++++||+|+.+... ..
T Consensus 142 ~~~~i~liDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~~q-t~e~~~~~~~--~gi~~iIvvvNK~Dl~~~~~~~~~ 218 (478)
T PLN03126 142 ENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQ-TKEHILLAKQ--VGVPNMVVFLNKQDQVDDEELLEL 218 (478)
T ss_pred CCcEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCcHH-HHHHHHHHHH--cCCCeEEEEEecccccCHHHHHHH
Confidence 4457789999999998766666778899999999998753322 2333333333 2677 788999999975221 11
Q ss_pred ---HHHHHHHHc-----CCcEEEeccCCCCCc
Q 029875 102 ---KQVTFHRKK-----NLQYYEISAKSNYNF 125 (186)
Q Consensus 102 ---~~~~~~~~~-----~~~~~~~Sa~~~~gi 125 (186)
+...+.+.. +++++.+||.+|.++
T Consensus 219 i~~~i~~~l~~~g~~~~~~~~vp~Sa~~g~n~ 250 (478)
T PLN03126 219 VELEVRELLSSYEFPGDDIPIISGSALLALEA 250 (478)
T ss_pred HHHHHHHHHHhcCCCcCcceEEEEEccccccc
Confidence 222333433 467999999988643
No 265
>PRK12739 elongation factor G; Reviewed
Probab=98.79 E-value=2.2e-08 Score=88.28 Aligned_cols=79 Identities=19% Similarity=0.166 Sum_probs=56.2
Q ss_pred EEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCC
Q 029875 13 VEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKV 92 (186)
Q Consensus 13 ~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~ 92 (186)
++....++..+ ..++.||||||+..|...+...++.+|++|+|+|+++...-+.. ..+..+.. .+.|+++++||+
T Consensus 61 i~~~~~~~~~~--~~~i~liDTPG~~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~-~i~~~~~~--~~~p~iv~iNK~ 135 (691)
T PRK12739 61 ITSAATTCFWK--GHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVSGVEPQSE-TVWRQADK--YGVPRIVFVNKM 135 (691)
T ss_pred ccceeEEEEEC--CEEEEEEcCCCHHHHHHHHHHHHHHhCeEEEEEeCCCCCCHHHH-HHHHHHHH--cCCCEEEEEECC
Confidence 33334444444 45778899999988877788889999999999999876443322 22333332 368999999999
Q ss_pred CCCC
Q 029875 93 DVKN 96 (186)
Q Consensus 93 Dl~~ 96 (186)
|+..
T Consensus 136 D~~~ 139 (691)
T PRK12739 136 DRIG 139 (691)
T ss_pred CCCC
Confidence 9864
No 266
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.77 E-value=4.3e-08 Score=79.65 Aligned_cols=110 Identities=15% Similarity=0.113 Sum_probs=73.3
Q ss_pred EEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChh---hHHhHHHH--HHHHHhhcCCCCEEEEEeCCCC
Q 029875 20 FFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARL---TYKNVPTW--HRDLCRVCENIPIVLCGNKVDV 94 (186)
Q Consensus 20 ~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~---s~~~i~~~--~~~~~~~~~~~p~ilv~nK~Dl 94 (186)
..+....+.+.|+|+||++.|-.-.-.-++.||+.|||+|+++.+ +|.---+. .-.+.+...-..+|++.||+|+
T Consensus 78 ~~fet~k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~~lIVavNKMD~ 157 (428)
T COG5256 78 SKFETDKYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIKQLIVAVNKMDL 157 (428)
T ss_pred EEeecCCceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcCCceEEEEEEcccc
Confidence 344557778999999999998877777888999999999999862 22111111 1112222234568999999999
Q ss_pred CCcc------cChHHHHHHHHcC-----CcEEEeccCCCCCchHHH
Q 029875 95 KNRQ------VKAKQVTFHRKKN-----LQYYEISAKSNYNFEKPF 129 (186)
Q Consensus 95 ~~~~------~~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~l~ 129 (186)
.+.. +..+...+.+..+ ++++.||+.+|.|+.+.=
T Consensus 158 v~wde~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~s 203 (428)
T COG5256 158 VSWDEERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKKS 203 (428)
T ss_pred cccCHHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccccC
Confidence 8621 1122223444444 469999999999976543
No 267
>PLN03127 Elongation factor Tu; Provisional
Probab=98.77 E-value=7.6e-08 Score=80.76 Aligned_cols=111 Identities=14% Similarity=0.025 Sum_probs=67.3
Q ss_pred CCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCC-EEEEEeCCCCCCccc-C
Q 029875 23 NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKNRQV-K 100 (186)
Q Consensus 23 ~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~-~ 100 (186)
+....++.|.||||+.+|.......+..+|++++|+|+++...-+ ....+..+.. .+.| +|++.||+|+.+... .
T Consensus 120 ~~~~~~i~~iDtPGh~~f~~~~~~g~~~aD~allVVda~~g~~~q-t~e~l~~~~~--~gip~iIvviNKiDlv~~~~~~ 196 (447)
T PLN03127 120 ETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQ-TKEHILLARQ--VGVPSLVVFLNKVDVVDDEELL 196 (447)
T ss_pred cCCCeEEEEEECCCccchHHHHHHHHhhCCEEEEEEECCCCCchh-HHHHHHHHHH--cCCCeEEEEEEeeccCCHHHHH
Confidence 334457788899999887655555667799999999998653222 1222222322 3678 578899999974221 1
Q ss_pred h----HHHHHHHHc-----CCcEEEeccC---CCCC-------chHHHHHHHHHH
Q 029875 101 A----KQVTFHRKK-----NLQYYEISAK---SNYN-------FEKPFLYLARKL 136 (186)
Q Consensus 101 ~----~~~~~~~~~-----~~~~~~~Sa~---~~~g-------i~~l~~~l~~~i 136 (186)
. +..++.... .++++.+||. +|.| +..+++.+...+
T Consensus 197 ~~i~~~i~~~l~~~~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~l 251 (447)
T PLN03127 197 ELVEMELRELLSFYKFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYI 251 (447)
T ss_pred HHHHHHHHHHHHHhCCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhC
Confidence 1 111222222 2578888876 4545 556666665544
No 268
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=98.73 E-value=1.1e-07 Score=74.62 Aligned_cols=131 Identities=18% Similarity=0.232 Sum_probs=80.5
Q ss_pred CCeEEEEEEEeCCCcc------ccC------CccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEe
Q 029875 23 NCGKIRFYCWDTAGQE------KFG------GLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGN 90 (186)
Q Consensus 23 ~~~~~~l~l~Dt~G~~------~~~------~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~n 90 (186)
.....++.|+||||.- ++. +-.+..+..||++++|+|+++.-..-. .+.+..+.. ..+.|-++|.|
T Consensus 116 ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~~~~a~q~AD~vvVv~Das~tr~~l~-p~vl~~l~~-ys~ips~lvmn 193 (379)
T KOG1423|consen 116 TSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQNPRDAAQNADCVVVVVDASATRTPLH-PRVLHMLEE-YSKIPSILVMN 193 (379)
T ss_pred ecCceEEEEecCCcccccchhhhHHHHHHhhhCHHHHHhhCCEEEEEEeccCCcCccC-hHHHHHHHH-HhcCCceeecc
Confidence 3467899999999942 111 123445678999999999997322111 122323333 35789999999
Q ss_pred CCCCCCcc--------------cChHHHHHHHHcC-------------C----cEEEeccCCCCCchHHHHHHHHHHhCC
Q 029875 91 KVDVKNRQ--------------VKAKQVTFHRKKN-------------L----QYYEISAKSNYNFEKPFLYLARKLAGD 139 (186)
Q Consensus 91 K~Dl~~~~--------------~~~~~~~~~~~~~-------------~----~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 139 (186)
|.|...+. ......++..++. . .+|.+||++|.||+++-++|+.+....
T Consensus 194 kid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~g 273 (379)
T KOG1423|consen 194 KIDKLKQKRLLLNLKDLLTNGELAKLKLEVQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPPG 273 (379)
T ss_pred chhcchhhhHHhhhHHhccccccchhhhhHHHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCCC
Confidence 99975311 1111112222221 1 389999999999999999999888766
Q ss_pred CCcccccCCCCCCCcc
Q 029875 140 PNLHFVESPALAPPEV 155 (186)
Q Consensus 140 ~~~~~~~~~~~~~~~~ 155 (186)
+-..........+++.
T Consensus 274 pW~y~a~i~T~~s~e~ 289 (379)
T KOG1423|consen 274 PWKYPADIVTEESPEF 289 (379)
T ss_pred CCCCCcccccccCHHH
Confidence 5443333333334443
No 269
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.72 E-value=5.4e-08 Score=70.37 Aligned_cols=91 Identities=12% Similarity=0.069 Sum_probs=58.2
Q ss_pred cccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCcccChHHHH-HHHHcCCcEEEeccCCCCC
Q 029875 46 GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVT-FHRKKNLQYYEISAKSNYN 124 (186)
Q Consensus 46 ~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~-~~~~~~~~~~~~Sa~~~~g 124 (186)
..+++||++++|+|++++..-.. ..+.+.+.....+.|+++|.||+|+.++........ +.+.+....+.+||+.+.|
T Consensus 4 ~~l~~aD~il~VvD~~~p~~~~~-~~i~~~l~~~~~~~p~ilVlNKiDl~~~~~~~~~~~~~~~~~~~~~~~iSa~~~~~ 82 (157)
T cd01858 4 KVIDSSDVVIQVLDARDPMGTRC-KHVEEYLKKEKPHKHLIFVLNKCDLVPTWVTARWVKILSKEYPTIAFHASINNPFG 82 (157)
T ss_pred HhhhhCCEEEEEEECCCCccccC-HHHHHHHHhccCCCCEEEEEEchhcCCHHHHHHHHHHHhcCCcEEEEEeecccccc
Confidence 45788999999999998643211 122223322234689999999999964321111111 1122222357899999999
Q ss_pred chHHHHHHHHHHh
Q 029875 125 FEKPFLYLARKLA 137 (186)
Q Consensus 125 i~~l~~~l~~~i~ 137 (186)
++++++.+...+.
T Consensus 83 ~~~L~~~l~~~~~ 95 (157)
T cd01858 83 KGSLIQLLRQFSK 95 (157)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999977643
No 270
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.72 E-value=1.9e-08 Score=73.84 Aligned_cols=92 Identities=18% Similarity=0.129 Sum_probs=62.5
Q ss_pred CCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCcccChHHHHHHHHcCCcEEEeccC
Q 029875 41 GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAK 120 (186)
Q Consensus 41 ~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~ 120 (186)
.......+++||++++|+|++++.+.... . +.....+.|+++|.||+|+.+........+..+..+..++.+||+
T Consensus 10 ~~~~~~~i~~aD~il~v~D~~~~~~~~~~-~----i~~~~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~vi~iSa~ 84 (171)
T cd01856 10 LRQIKEKLKLVDLVIEVRDARIPLSSRNP-L----LEKILGNKPRIIVLNKADLADPKKTKKWLKYFESKGEKVLFVNAK 84 (171)
T ss_pred HHHHHHHHhhCCEEEEEeeccCccCcCCh-h----hHhHhcCCCEEEEEehhhcCChHHHHHHHHHHHhcCCeEEEEECC
Confidence 34456678899999999999876542221 1 222223679999999999964321111112223334568999999
Q ss_pred CCCCchHHHHHHHHHHh
Q 029875 121 SNYNFEKPFLYLARKLA 137 (186)
Q Consensus 121 ~~~gi~~l~~~l~~~i~ 137 (186)
++.|++++...+...+.
T Consensus 85 ~~~gi~~L~~~l~~~l~ 101 (171)
T cd01856 85 SGKGVKKLLKAAKKLLK 101 (171)
T ss_pred CcccHHHHHHHHHHHHH
Confidence 99999999999988763
No 271
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=98.70 E-value=4.4e-08 Score=86.74 Aligned_cols=87 Identities=21% Similarity=0.114 Sum_probs=65.5
Q ss_pred ccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEE
Q 029875 7 GKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIV 86 (186)
Q Consensus 7 ~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~i 86 (186)
+..|+...+....+..++..+++.||||||+.+|.......++.+|++|+|+|+......+...-|. .... .+.|++
T Consensus 66 rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~~-~~~~--~~~p~i 142 (720)
T TIGR00490 66 RGITINAANVSMVHEYEGNEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLR-QALK--ENVKPV 142 (720)
T ss_pred hcchhhcccceeEEeecCCceEEEEEeCCCccccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHHH-HHHH--cCCCEE
Confidence 5568887776666666778899999999999998888888999999999999998743333222222 2222 367889
Q ss_pred EEEeCCCCCC
Q 029875 87 LCGNKVDVKN 96 (186)
Q Consensus 87 lv~nK~Dl~~ 96 (186)
+++||+|...
T Consensus 143 vviNKiD~~~ 152 (720)
T TIGR00490 143 LFINKVDRLI 152 (720)
T ss_pred EEEEChhccc
Confidence 9999999863
No 272
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=98.69 E-value=2.4e-07 Score=79.65 Aligned_cols=124 Identities=14% Similarity=0.112 Sum_probs=87.6
Q ss_pred eEEEEEEEEEECCeEEEEEEEeCCCccccCCc------cccccc--cCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCC
Q 029875 12 GVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL------RDGYYI--HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENI 83 (186)
Q Consensus 12 g~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~------~~~~~~--~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~ 83 (186)
|+.+..++-......-.+++.|.||....... .+.|+. .+|++|-|+|+++.+. ++. .--++.+ -+.
T Consensus 35 GvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~~~D~ivnVvDAtnLeR--nLy-ltlQLlE--~g~ 109 (653)
T COG0370 35 GVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEKVARDFLLEGKPDLIVNVVDATNLER--NLY-LTLQLLE--LGI 109 (653)
T ss_pred CeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCchHHHHHHHHhcCCCCEEEEEcccchHHH--HHH-HHHHHHH--cCC
Confidence 45555555555444445778899997654432 344443 4799999999998643 211 1222333 379
Q ss_pred CEEEEEeCCCCCCc-ccChHHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCCC
Q 029875 84 PIVLCGNKVDVKNR-QVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDP 140 (186)
Q Consensus 84 p~ilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~ 140 (186)
|++++.|++|...+ .+.-+..++.+..|+|++++||++|.|++++...+.+....+.
T Consensus 110 p~ilaLNm~D~A~~~Gi~ID~~~L~~~LGvPVv~tvA~~g~G~~~l~~~i~~~~~~~~ 167 (653)
T COG0370 110 PMILALNMIDEAKKRGIRIDIEKLSKLLGVPVVPTVAKRGEGLEELKRAIIELAESKT 167 (653)
T ss_pred CeEEEeccHhhHHhcCCcccHHHHHHHhCCCEEEEEeecCCCHHHHHHHHHHhccccc
Confidence 99999999999754 3445566888999999999999999999999999987665554
No 273
>COG1084 Predicted GTPase [General function prediction only]
Probab=98.69 E-value=2.2e-07 Score=73.59 Aligned_cols=125 Identities=16% Similarity=0.182 Sum_probs=83.3
Q ss_pred ccceEEEEEEEEEECCeEEEEEEEeCCCcccc-----CCc---cccccc-cCcEEEEEEeCCChh--hHHhHHHHHHHHH
Q 029875 9 ATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF-----GGL---RDGYYI-HGQCAIIMFDVTARL--TYKNVPTWHRDLC 77 (186)
Q Consensus 9 ~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~-----~~~---~~~~~~-~ad~vilv~D~~~~~--s~~~i~~~~~~~~ 77 (186)
+|-|+.+.+... +..++|++||||.-.- +.. .-..++ =+++|+|+||.+... +.+.-...++++.
T Consensus 201 TTK~i~vGhfe~----~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk 276 (346)
T COG1084 201 TTKGIHVGHFER----GYLRIQVIDTPGLLDRPLEERNEIERQAILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIK 276 (346)
T ss_pred cccceeEeeeec----CCceEEEecCCcccCCChHHhcHHHHHHHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHH
Confidence 466666665443 6678899999996431 111 111222 278999999999765 4555556777777
Q ss_pred hhcCCCCEEEEEeCCCCCCcccChHHH-HHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhC
Q 029875 78 RVCENIPIVLCGNKVDVKNRQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG 138 (186)
Q Consensus 78 ~~~~~~p~ilv~nK~Dl~~~~~~~~~~-~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 138 (186)
.... .|+++|.||+|+....-..+.. .+....+.....+++..+.+++.+-..+.....+
T Consensus 277 ~~f~-~p~v~V~nK~D~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~v~~~a~~ 337 (346)
T COG1084 277 ELFK-APIVVVINKIDIADEEKLEEIEASVLEEGGEEPLKISATKGCGLDKLREEVRKTALE 337 (346)
T ss_pred HhcC-CCeEEEEecccccchhHHHHHHHHHHhhccccccceeeeehhhHHHHHHHHHHHhhc
Confidence 7765 8999999999987533333322 2333334458899999999999887777766443
No 274
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.69 E-value=6.1e-08 Score=68.87 Aligned_cols=77 Identities=12% Similarity=0.152 Sum_probs=53.7
Q ss_pred ccccccCcEEEEEEeCCChhhHH--hHHHHHHHHHhhcCCCCEEEEEeCCCCCCcccChHHHHHHHHcCCcEEEeccCCC
Q 029875 45 DGYYIHGQCAIIMFDVTARLTYK--NVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSN 122 (186)
Q Consensus 45 ~~~~~~ad~vilv~D~~~~~s~~--~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 122 (186)
...++.||++++|+|++++.+.. .+..|+... ..+.|+++|+||+|+.+........+.....+..++.+||++|
T Consensus 6 ~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~---~~~k~~iivlNK~DL~~~~~~~~~~~~~~~~~~~ii~iSa~~~ 82 (141)
T cd01857 6 WRVVERSDIVVQIVDARNPLLFRPPDLERYVKEV---DPRKKNILLLNKADLLTEEQRKAWAEYFKKEGIVVVFFSALKE 82 (141)
T ss_pred HHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhc---cCCCcEEEEEechhcCCHHHHHHHHHHHHhcCCeEEEEEecCC
Confidence 34577899999999999877644 334444432 2478999999999996433222233444555678999999988
Q ss_pred CC
Q 029875 123 YN 124 (186)
Q Consensus 123 ~g 124 (186)
.+
T Consensus 83 ~~ 84 (141)
T cd01857 83 NA 84 (141)
T ss_pred Cc
Confidence 64
No 275
>COG2262 HflX GTPases [General function prediction only]
Probab=98.67 E-value=2e-07 Score=75.82 Aligned_cols=112 Identities=18% Similarity=0.123 Sum_probs=75.2
Q ss_pred CeEEEEEEEeCCCccccC--Cccc------cccccCcEEEEEEeCCChhhHHhHHHHHHHHHhh-cCCCCEEEEEeCCCC
Q 029875 24 CGKIRFYCWDTAGQEKFG--GLRD------GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV-CENIPIVLCGNKVDV 94 (186)
Q Consensus 24 ~~~~~l~l~Dt~G~~~~~--~~~~------~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~-~~~~p~ilv~nK~Dl 94 (186)
|..+. +.||-|--+-- .+.. .-...||+++.|+|++++...+.+..-..-+.+. ..+.|+|+|.||+|+
T Consensus 239 g~~vl--LtDTVGFI~~LP~~LV~AFksTLEE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~ 316 (411)
T COG2262 239 GRKVL--LTDTVGFIRDLPHPLVEAFKSTLEEVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDL 316 (411)
T ss_pred CceEE--EecCccCcccCChHHHHHHHHHHHHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccc
Confidence 44444 45998843221 1111 1245799999999999996666665544444444 257999999999997
Q ss_pred CCcccChHHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCCC
Q 029875 95 KNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDP 140 (186)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~ 140 (186)
..... .........-..+.+||++|.|++.+...|...+....
T Consensus 317 ~~~~~---~~~~~~~~~~~~v~iSA~~~~gl~~L~~~i~~~l~~~~ 359 (411)
T COG2262 317 LEDEE---ILAELERGSPNPVFISAKTGEGLDLLRERIIELLSGLR 359 (411)
T ss_pred cCchh---hhhhhhhcCCCeEEEEeccCcCHHHHHHHHHHHhhhcc
Confidence 64332 11222222215899999999999999999999988554
No 276
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.65 E-value=1.8e-07 Score=67.44 Aligned_cols=82 Identities=17% Similarity=0.171 Sum_probs=55.4
Q ss_pred cEEEEEEeCCChhhHHhHHHHHHH-HHhhcCCCCEEEEEeCCCCCCcccChHHH-HHHHHcCCcEEEeccCCCCCchHHH
Q 029875 52 QCAIIMFDVTARLTYKNVPTWHRD-LCRVCENIPIVLCGNKVDVKNRQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPF 129 (186)
Q Consensus 52 d~vilv~D~~~~~s~~~i~~~~~~-~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~-~~~~~~~~~~~~~Sa~~~~gi~~l~ 129 (186)
|++++|+|++++.+... .|+.. ... ..+.|+++|.||+|+.+........ .+....+..++.+||++|.|+++++
T Consensus 1 Dvvl~VvD~~~p~~~~~--~~i~~~~~~-~~~~p~IiVlNK~Dl~~~~~~~~~~~~~~~~~~~~ii~vSa~~~~gi~~L~ 77 (155)
T cd01849 1 DVILEVLDARDPLGTRS--PDIERVLIK-EKGKKLILVLNKADLVPKEVLRKWLAYLRHSYPTIPFKISATNGQGIEKKE 77 (155)
T ss_pred CEEEEEEeccCCccccC--HHHHHHHHh-cCCCCEEEEEechhcCCHHHHHHHHHHHHhhCCceEEEEeccCCcChhhHH
Confidence 68999999998765543 33331 111 2478999999999996432111111 2222334568999999999999999
Q ss_pred HHHHHHH
Q 029875 130 LYLARKL 136 (186)
Q Consensus 130 ~~l~~~i 136 (186)
+.+.+.+
T Consensus 78 ~~i~~~~ 84 (155)
T cd01849 78 SAFTKQT 84 (155)
T ss_pred HHHHHHh
Confidence 9987654
No 277
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.62 E-value=1.4e-07 Score=74.55 Aligned_cols=91 Identities=18% Similarity=0.198 Sum_probs=62.4
Q ss_pred cccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCcccChHHHHHHHHcCCcEEEeccCCCC
Q 029875 44 RDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNY 123 (186)
Q Consensus 44 ~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 123 (186)
....++.||++|+|+|++.+.+.+. .++.... .+.|+++|.||+|+.+........+..+..+.+++.+||+++.
T Consensus 15 ~~~~l~~aDvVl~V~Dar~p~~~~~--~~i~~~l---~~kp~IiVlNK~DL~~~~~~~~~~~~~~~~~~~vi~iSa~~~~ 89 (276)
T TIGR03596 15 IKEKLKLVDVVIEVLDARIPLSSRN--PMIDEIR---GNKPRLIVLNKADLADPAVTKQWLKYFEEKGIKALAINAKKGK 89 (276)
T ss_pred HHHHHhhCCEEEEEEeCCCCCCCCC--hhHHHHH---CCCCEEEEEEccccCCHHHHHHHHHHHHHcCCeEEEEECCCcc
Confidence 4556789999999999987655332 1222222 3689999999999964321111112223345678999999999
Q ss_pred CchHHHHHHHHHHhCC
Q 029875 124 NFEKPFLYLARKLAGD 139 (186)
Q Consensus 124 gi~~l~~~l~~~i~~~ 139 (186)
|++++.+.+.+.+.+.
T Consensus 90 gi~~L~~~i~~~~~~~ 105 (276)
T TIGR03596 90 GVKKIIKAAKKLLKEK 105 (276)
T ss_pred cHHHHHHHHHHHHHHh
Confidence 9999999988777543
No 278
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=98.55 E-value=1.4e-07 Score=69.60 Aligned_cols=73 Identities=16% Similarity=0.250 Sum_probs=47.4
Q ss_pred EEEEEEEeCCCccccCCcccc---ccccCcEEEEEEeCCC-hhhHHhHHHHHHHHHhh----cCCCCEEEEEeCCCCCCc
Q 029875 26 KIRFYCWDTAGQEKFGGLRDG---YYIHGQCAIIMFDVTA-RLTYKNVPTWHRDLCRV----CENIPIVLCGNKVDVKNR 97 (186)
Q Consensus 26 ~~~l~l~Dt~G~~~~~~~~~~---~~~~ad~vilv~D~~~-~~s~~~i~~~~~~~~~~----~~~~p~ilv~nK~Dl~~~ 97 (186)
.-.+.++|+||+.+.+..... +...+.+||||+|++. ...+.++..++-.+... ....|++|++||.|+...
T Consensus 48 ~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A 127 (181)
T PF09439_consen 48 GKKLRLVDIPGHPRLRSKLLDELKYLSNAKGIIFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTA 127 (181)
T ss_dssp GTCECEEEETT-HCCCHHHHHHHHHHGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT-
T ss_pred CCEEEEEECCCcHHHHHHHHHhhhchhhCCEEEEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCcccccc
Confidence 345677899999998764433 4788999999999984 33455554444444332 247899999999999754
Q ss_pred c
Q 029875 98 Q 98 (186)
Q Consensus 98 ~ 98 (186)
.
T Consensus 128 ~ 128 (181)
T PF09439_consen 128 K 128 (181)
T ss_dssp -
T ss_pred C
Confidence 3
No 279
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=98.53 E-value=1.7e-07 Score=75.46 Aligned_cols=129 Identities=14% Similarity=0.149 Sum_probs=88.4
Q ss_pred ccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhH--Hh--------HHHHHHHH
Q 029875 7 GKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTY--KN--------VPTWHRDL 76 (186)
Q Consensus 7 ~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~--~~--------i~~~~~~~ 76 (186)
..||.|+.-...++ +...+.++|+|||..-+.-|-+.+.+++++|||++++..+.. ++ -...++.+
T Consensus 179 R~~T~GI~e~~F~~----k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI 254 (354)
T KOG0082|consen 179 RVPTTGIVEVEFTI----KGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESI 254 (354)
T ss_pred ccCcCCeeEEEEEe----CCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHH
Confidence 47888866665554 457888899999999999999999999999999999876532 22 11233333
Q ss_pred Hhhc--CCCCEEEEEeCCCCCCcc-----------------cChHHH-----HHHHHc-----CCcEEEeccCCCCCchH
Q 029875 77 CRVC--ENIPIVLCGNKVDVKNRQ-----------------VKAKQV-----TFHRKK-----NLQYYEISAKSNYNFEK 127 (186)
Q Consensus 77 ~~~~--~~~p~ilv~nK~Dl~~~~-----------------~~~~~~-----~~~~~~-----~~~~~~~Sa~~~~gi~~ 127 (186)
.+.. .+.++|++.||.||-... ...++. +|...+ .+-+..++|.+-.+|+.
T Consensus 255 ~n~~~F~~tsiiLFLNK~DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~ 334 (354)
T KOG0082|consen 255 CNNKWFANTSIILFLNKKDLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQF 334 (354)
T ss_pred hcCcccccCcEEEEeecHHHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHH
Confidence 3321 579999999999983210 111111 222211 12355678999999999
Q ss_pred HHHHHHHHHhCC
Q 029875 128 PFLYLARKLAGD 139 (186)
Q Consensus 128 l~~~l~~~i~~~ 139 (186)
+|..+...+...
T Consensus 335 vf~av~d~Ii~~ 346 (354)
T KOG0082|consen 335 VFDAVTDTIIQN 346 (354)
T ss_pred HHHHHHHHHHHH
Confidence 999999888654
No 280
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.50 E-value=9.5e-07 Score=66.03 Aligned_cols=69 Identities=16% Similarity=0.221 Sum_probs=48.7
Q ss_pred EEEEEeCCCccccCCccccccc---cCcEEEEEEeCCCh-hhHHhHHHHHHH-HHhh---cCCCCEEEEEeCCCCCC
Q 029875 28 RFYCWDTAGQEKFGGLRDGYYI---HGQCAIIMFDVTAR-LTYKNVPTWHRD-LCRV---CENIPIVLCGNKVDVKN 96 (186)
Q Consensus 28 ~l~l~Dt~G~~~~~~~~~~~~~---~ad~vilv~D~~~~-~s~~~i~~~~~~-~~~~---~~~~p~ilv~nK~Dl~~ 96 (186)
..+|.|.||+.+.+.....+++ .|-++|||+|+.-- ....++..++-. +... ....|++|++||.|+.-
T Consensus 83 ~~~LVD~PGH~rlR~kl~e~~~~~~~akaiVFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~t 159 (238)
T KOG0090|consen 83 NVTLVDLPGHSRLRRKLLEYLKHNYSAKAIVFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFT 159 (238)
T ss_pred ceEEEeCCCcHHHHHHHHHHccccccceeEEEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhh
Confidence 3778899999998887777777 79999999998642 233333333333 2222 24689999999999853
No 281
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=98.49 E-value=1.3e-06 Score=65.62 Aligned_cols=107 Identities=17% Similarity=0.153 Sum_probs=68.7
Q ss_pred EEEEEEeCCCccccCCcccc-----ccccCcEEEEEEeCCChhhHHhH-HHHHHHHHhhcCCCCEEEEEeCCCCCC--cc
Q 029875 27 IRFYCWDTAGQEKFGGLRDG-----YYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN--RQ 98 (186)
Q Consensus 27 ~~l~l~Dt~G~~~~~~~~~~-----~~~~ad~vilv~D~~~~~s~~~i-~~~~~~~~~~~~~~p~ilv~nK~Dl~~--~~ 98 (186)
..+.+|||+|.......... .+.++|++++|.+. +|... ..|++.+.+. +.|+++|+||+|+.. ..
T Consensus 52 ~~l~l~DtpG~~~~~~~~~~~l~~~~~~~~d~~l~v~~~----~~~~~d~~~~~~l~~~--~~~~ilV~nK~D~~~~~~~ 125 (197)
T cd04104 52 PNVTLWDLPGIGSTAFPPDDYLEEMKFSEYDFFIIISST----RFSSNDVKLAKAIQCM--GKKFYFVRTKVDRDLSNEQ 125 (197)
T ss_pred CCceEEeCCCCCcccCCHHHHHHHhCccCcCEEEEEeCC----CCCHHHHHHHHHHHHh--CCCEEEEEecccchhhhhh
Confidence 36899999997654333333 36778999988543 23332 3566666654 689999999999842 10
Q ss_pred -----------cChHHHHHH----HHcC---CcEEEeccC--CCCCchHHHHHHHHHHhCC
Q 029875 99 -----------VKAKQVTFH----RKKN---LQYYEISAK--SNYNFEKPFLYLARKLAGD 139 (186)
Q Consensus 99 -----------~~~~~~~~~----~~~~---~~~~~~Sa~--~~~gi~~l~~~l~~~i~~~ 139 (186)
..++..+.+ ...+ -+++.+|+. .+.|+..+.+.+...+...
T Consensus 126 ~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~ 186 (197)
T cd04104 126 RSKPRSFNREQVLQEIRDNCLENLQEAGVSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAH 186 (197)
T ss_pred ccccccccHHHHHHHHHHHHHHHHHHcCCCCCCEEEEeCCChhhcChHHHHHHHHHHhhHH
Confidence 011111111 2212 268999998 6789999999999888754
No 282
>PRK00007 elongation factor G; Reviewed
Probab=98.48 E-value=2.6e-07 Score=81.59 Aligned_cols=107 Identities=16% Similarity=0.136 Sum_probs=68.4
Q ss_pred ceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEe
Q 029875 11 IGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGN 90 (186)
Q Consensus 11 ig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~n 90 (186)
+.++.....+... ..++.|+||||+..|.......++.+|++|+|+|+......+...- +..+.. .+.|+++++|
T Consensus 61 ~ti~~~~~~~~~~--~~~~~liDTPG~~~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~-~~~~~~--~~~p~iv~vN 135 (693)
T PRK00007 61 ITITSAATTCFWK--DHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVGGVEPQSETV-WRQADK--YKVPRIAFVN 135 (693)
T ss_pred CCEeccEEEEEEC--CeEEEEEeCCCcHHHHHHHHHHHHHcCEEEEEEECCCCcchhhHHH-HHHHHH--cCCCEEEEEE
Confidence 3334444444444 4567778999998876666777889999999999987644443222 223333 3689999999
Q ss_pred CCCCCCcccChHHHHHHHHcCC----cEEEeccCCC
Q 029875 91 KVDVKNRQVKAKQVTFHRKKNL----QYYEISAKSN 122 (186)
Q Consensus 91 K~Dl~~~~~~~~~~~~~~~~~~----~~~~~Sa~~~ 122 (186)
|+|+.+.........+...++. ..+.+|+..+
T Consensus 136 K~D~~~~~~~~~~~~i~~~l~~~~~~~~ipisa~~~ 171 (693)
T PRK00007 136 KMDRTGADFYRVVEQIKDRLGANPVPIQLPIGAEDD 171 (693)
T ss_pred CCCCCCCCHHHHHHHHHHHhCCCeeeEEecCccCCc
Confidence 9999864432222334344443 3567777766
No 283
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.48 E-value=5e-07 Score=71.74 Aligned_cols=90 Identities=19% Similarity=0.204 Sum_probs=62.4
Q ss_pred cccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCcccChHHHHHHHHcCCcEEEeccCCCC
Q 029875 44 RDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNY 123 (186)
Q Consensus 44 ~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 123 (186)
....++.||++|+|+|+..+.+.+. .++.... .+.|+++|.||+|+.+..............+.+++.+||+++.
T Consensus 18 l~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~~---~~kp~iiVlNK~DL~~~~~~~~~~~~~~~~~~~vi~vSa~~~~ 92 (287)
T PRK09563 18 IKENLKLVDVVIEVLDARIPLSSEN--PMIDKII---GNKPRLLILNKSDLADPEVTKKWIEYFEEQGIKALAINAKKGQ 92 (287)
T ss_pred HHHHhhhCCEEEEEEECCCCCCCCC--hhHHHHh---CCCCEEEEEEchhcCCHHHHHHHHHHHHHcCCeEEEEECCCcc
Confidence 4556789999999999987755332 2222222 3689999999999964321111122223445678999999999
Q ss_pred CchHHHHHHHHHHhC
Q 029875 124 NFEKPFLYLARKLAG 138 (186)
Q Consensus 124 gi~~l~~~l~~~i~~ 138 (186)
|++++...+...+..
T Consensus 93 gi~~L~~~l~~~l~~ 107 (287)
T PRK09563 93 GVKKILKAAKKLLKE 107 (287)
T ss_pred cHHHHHHHHHHHHHH
Confidence 999999988877654
No 284
>PRK13796 GTPase YqeH; Provisional
Probab=98.47 E-value=1e-06 Score=72.23 Aligned_cols=83 Identities=20% Similarity=0.287 Sum_probs=60.0
Q ss_pred ccCc-EEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCcccChH-HHHH----HHHcCC---cEEEecc
Q 029875 49 IHGQ-CAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK-QVTF----HRKKNL---QYYEISA 119 (186)
Q Consensus 49 ~~ad-~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~-~~~~----~~~~~~---~~~~~Sa 119 (186)
..++ .+++|+|+.+.. ..|...+.+...+.|+++|+||+|+.+.....+ ...| ++..++ .++.+||
T Consensus 67 ~~~~~lIv~VVD~~D~~-----~s~~~~L~~~~~~kpviLViNK~DLl~~~~~~~~i~~~l~~~~k~~g~~~~~v~~vSA 141 (365)
T PRK13796 67 GDSDALVVNVVDIFDFN-----GSWIPGLHRFVGNNPVLLVGNKADLLPKSVKKNKVKNWLRQEAKELGLRPVDVVLISA 141 (365)
T ss_pred cccCcEEEEEEECccCC-----CchhHHHHHHhCCCCEEEEEEchhhCCCccCHHHHHHHHHHHHHhcCCCcCcEEEEEC
Confidence 3444 999999998743 245666666556789999999999975433222 2223 445565 5899999
Q ss_pred CCCCCchHHHHHHHHHH
Q 029875 120 KSNYNFEKPFLYLARKL 136 (186)
Q Consensus 120 ~~~~gi~~l~~~l~~~i 136 (186)
++|.|++++++.+.+..
T Consensus 142 k~g~gI~eL~~~I~~~~ 158 (365)
T PRK13796 142 QKGHGIDELLEAIEKYR 158 (365)
T ss_pred CCCCCHHHHHHHHHHhc
Confidence 99999999999997653
No 285
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=98.46 E-value=5.8e-07 Score=77.75 Aligned_cols=103 Identities=24% Similarity=0.268 Sum_probs=72.4
Q ss_pred EEEEeCCCccccCCccccccccCcEEEEEEeCCCh---hhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCC-C------cc
Q 029875 29 FYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTAR---LTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK-N------RQ 98 (186)
Q Consensus 29 l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~---~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~-~------~~ 98 (186)
+.++||||++.|.+++....+-||.+|+|+|+-.. .+.+.+ +.++. .+.|+||+.||+|.. + ..
T Consensus 542 ~lvIdtpghEsFtnlRsrgsslC~~aIlvvdImhGlepqtiESi----~lLR~--rktpFivALNKiDRLYgwk~~p~~~ 615 (1064)
T KOG1144|consen 542 LLVIDTPGHESFTNLRSRGSSLCDLAILVVDIMHGLEPQTIESI----NLLRM--RKTPFIVALNKIDRLYGWKSCPNAP 615 (1064)
T ss_pred eEEecCCCchhhhhhhhccccccceEEEEeehhccCCcchhHHH----HHHHh--cCCCeEEeehhhhhhcccccCCCch
Confidence 55779999999999999999999999999999653 343332 22222 489999999999963 1 11
Q ss_pred -----------cChHH--------HHHHH-HcC-------------CcEEEeccCCCCCchHHHHHHHHHHh
Q 029875 99 -----------VKAKQ--------VTFHR-KKN-------------LQYYEISAKSNYNFEKPFLYLARKLA 137 (186)
Q Consensus 99 -----------~~~~~--------~~~~~-~~~-------------~~~~~~Sa~~~~gi~~l~~~l~~~i~ 137 (186)
+..+. .+|+. .++ +.++.+||.+|.||-+|+.+|+....
T Consensus 616 i~~~lkkQ~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQ 687 (1064)
T KOG1144|consen 616 IVEALKKQKKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQ 687 (1064)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHH
Confidence 00010 12221 001 25789999999999999999987654
No 286
>PRK07560 elongation factor EF-2; Reviewed
Probab=98.43 E-value=9.2e-07 Score=78.63 Aligned_cols=83 Identities=23% Similarity=0.155 Sum_probs=58.2
Q ss_pred cceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEE
Q 029875 10 TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCG 89 (186)
Q Consensus 10 Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~ 89 (186)
|+.....+..+..++...++.|+||||+..|.......++.+|++|+|+|+...-..+...-|. .+.. .+.|.++++
T Consensus 70 Ti~~~~~~~~~~~~~~~~~i~liDtPG~~df~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~-~~~~--~~~~~iv~i 146 (731)
T PRK07560 70 TIKAANVSMVHEYEGKEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLR-QALR--ERVKPVLFI 146 (731)
T ss_pred hhhccceEEEEEecCCcEEEEEEcCCCccChHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHH-HHHH--cCCCeEEEE
Confidence 3433333333344666788999999999998887888899999999999998754333222333 2222 257889999
Q ss_pred eCCCCC
Q 029875 90 NKVDVK 95 (186)
Q Consensus 90 nK~Dl~ 95 (186)
||+|+.
T Consensus 147 NK~D~~ 152 (731)
T PRK07560 147 NKVDRL 152 (731)
T ss_pred ECchhh
Confidence 999975
No 287
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=98.43 E-value=2.4e-07 Score=63.59 Aligned_cols=114 Identities=17% Similarity=0.051 Sum_probs=76.7
Q ss_pred CccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCcc----ccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhh
Q 029875 4 SVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLR----DGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV 79 (186)
Q Consensus 4 ~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~----~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~ 79 (186)
++-|.-|..++|..+- .+||||...-+..| -....+++++++|-.++++.|--. ..+...
T Consensus 25 ~~lykKTQAve~~d~~-----------~IDTPGEy~~~~~~Y~aL~tt~~dadvi~~v~~and~~s~f~-----p~f~~~ 88 (148)
T COG4917 25 DTLYKKTQAVEFNDKG-----------DIDTPGEYFEHPRWYHALITTLQDADVIIYVHAANDPESRFP-----PGFLDI 88 (148)
T ss_pred hhhhcccceeeccCcc-----------ccCCchhhhhhhHHHHHHHHHhhccceeeeeecccCccccCC-----cccccc
Confidence 3445556666665421 34999954333332 334568999999999999865211 111111
Q ss_pred cCCCCEEEEEeCCCCCCcccChHHHHHHHHcCC-cEEEeccCCCCCchHHHHHHHH
Q 029875 80 CENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL-QYYEISAKSNYNFEKPFLYLAR 134 (186)
Q Consensus 80 ~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~ 134 (186)
...|+|-|++|.||++........+|..+-|. ++|++|+.++.|+++++..|..
T Consensus 89 -~~k~vIgvVTK~DLaed~dI~~~~~~L~eaGa~~IF~~s~~d~~gv~~l~~~L~~ 143 (148)
T COG4917 89 -GVKKVIGVVTKADLAEDADISLVKRWLREAGAEPIFETSAVDNQGVEELVDYLAS 143 (148)
T ss_pred -cccceEEEEecccccchHhHHHHHHHHHHcCCcceEEEeccCcccHHHHHHHHHh
Confidence 25679999999999864444445577777775 6999999999999999998874
No 288
>PRK09602 translation-associated GTPase; Reviewed
Probab=98.39 E-value=4.4e-06 Score=69.15 Aligned_cols=65 Identities=17% Similarity=0.255 Sum_probs=46.1
Q ss_pred CCCEEEEEeCCCCCCcccChHHHHHHHHcCCcEEEeccCCCCCchH-HHHHHHHHHhCCCCcccccCC
Q 029875 82 NIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEK-PFLYLARKLAGDPNLHFVESP 148 (186)
Q Consensus 82 ~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~-l~~~l~~~i~~~~~~~~~~~~ 148 (186)
.+|+++|+||.|+..... ....+....+..++.+||+.+.|+.+ +.+.+++.+...+.+......
T Consensus 217 ~KPvI~VlNK~D~~~~~~--~l~~i~~~~~~~vvpISA~~e~~l~~~l~~~i~~~lp~~p~~~~~d~l 282 (396)
T PRK09602 217 SKPMVIAANKADLPPAEE--NIERLKEEKYYIVVPTSAEAELALRRAAKAGLIDYIPGDSDFEILGEL 282 (396)
T ss_pred CCCEEEEEEchhcccchH--HHHHHHhcCCCcEEEEcchhhhhHHHHHHHhHHhhCCCCCccCccccC
Confidence 389999999999753211 11222222345699999999999999 888888888888766555443
No 289
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=98.39 E-value=6.2e-06 Score=65.87 Aligned_cols=112 Identities=16% Similarity=0.172 Sum_probs=75.0
Q ss_pred EEEEeCCCcccc----CCccccccc---cCcEEEEEEeCCChh---hHHhHHHHHHHHHhhc---CCCCEEEEEeCCCCC
Q 029875 29 FYCWDTAGQEKF----GGLRDGYYI---HGQCAIIMFDVTARL---TYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVK 95 (186)
Q Consensus 29 l~l~Dt~G~~~~----~~~~~~~~~---~ad~vilv~D~~~~~---s~~~i~~~~~~~~~~~---~~~p~ilv~nK~Dl~ 95 (186)
+.+=|.||.-.- ..+...|++ .+.+.+.|+|++..+ ..++......++..+. .+.|.+||+||+|+.
T Consensus 209 fv~ADIPGLIEGAs~G~GLG~~FLrHIERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~ 288 (369)
T COG0536 209 FVVADIPGLIEGASEGVGLGLRFLRHIERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLP 288 (369)
T ss_pred EEEecCcccccccccCCCccHHHHHHHHhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCC
Confidence 445599996432 224445544 689999999998654 2444455555555553 589999999999976
Q ss_pred CcccChH--HHHHHHHcCCcEE-EeccCCCCCchHHHHHHHHHHhCCC
Q 029875 96 NRQVKAK--QVTFHRKKNLQYY-EISAKSNYNFEKPFLYLARKLAGDP 140 (186)
Q Consensus 96 ~~~~~~~--~~~~~~~~~~~~~-~~Sa~~~~gi~~l~~~l~~~i~~~~ 140 (186)
......+ ...+.+..+...+ .+||.++.|++++...+.+.+.+..
T Consensus 289 ~~~e~~~~~~~~l~~~~~~~~~~~ISa~t~~g~~~L~~~~~~~l~~~~ 336 (369)
T COG0536 289 LDEEELEELKKALAEALGWEVFYLISALTREGLDELLRALAELLEETK 336 (369)
T ss_pred cCHHHHHHHHHHHHHhcCCCcceeeehhcccCHHHHHHHHHHHHHHhh
Confidence 4332222 2234444444322 2999999999999999999887765
No 290
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=98.38 E-value=1.7e-06 Score=72.14 Aligned_cols=115 Identities=13% Similarity=0.087 Sum_probs=81.3
Q ss_pred CeEEEEEEEeCCCcccc----CCccccc----c-ccCcEEEEEEeCCChh--hHHhHHHHHHHHHhhcCCCCEEEEEeCC
Q 029875 24 CGKIRFYCWDTAGQEKF----GGLRDGY----Y-IHGQCAIIMFDVTARL--TYKNVPTWHRDLCRVCENIPIVLCGNKV 92 (186)
Q Consensus 24 ~~~~~l~l~Dt~G~~~~----~~~~~~~----~-~~ad~vilv~D~~~~~--s~~~i~~~~~~~~~~~~~~p~ilv~nK~ 92 (186)
-+-.+++.+||||.... ++...+. + .=-.+|++++|++... |..+--..+..+.-.+.+.|.|+|.||+
T Consensus 212 ykYlrwQViDTPGILD~plEdrN~IEmqsITALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFaNK~~IlvlNK~ 291 (620)
T KOG1490|consen 212 YKYLRWQVIDTPGILDRPEEDRNIIEMQIITALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFANKVTILVLNKI 291 (620)
T ss_pred hheeeeeecCCccccCcchhhhhHHHHHHHHHHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhcCCceEEEeecc
Confidence 34578889999996442 1111111 1 1236799999999865 4455456778888888899999999999
Q ss_pred CCCC-cccChHHH----HHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhC
Q 029875 93 DVKN-RQVKAKQV----TFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG 138 (186)
Q Consensus 93 Dl~~-~~~~~~~~----~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 138 (186)
|+.. ....++.. .+....+++++++|+.+.+||.++-...+..++.
T Consensus 292 D~m~~edL~~~~~~ll~~~~~~~~v~v~~tS~~~eegVm~Vrt~ACe~LLa 342 (620)
T KOG1490|consen 292 DAMRPEDLDQKNQELLQTIIDDGNVKVVQTSCVQEEGVMDVRTTACEALLA 342 (620)
T ss_pred cccCccccCHHHHHHHHHHHhccCceEEEecccchhceeeHHHHHHHHHHH
Confidence 9874 33444432 3334445899999999999999988888877754
No 291
>COG0218 Predicted GTPase [General function prediction only]
Probab=98.37 E-value=7.4e-06 Score=60.94 Aligned_cols=105 Identities=14% Similarity=0.158 Sum_probs=70.6
Q ss_pred EEEEeCCC----------ccccCCcccccccc---CcEEEEEEeCCChhhHHh--HHHHHHHHHhhcCCCCEEEEEeCCC
Q 029875 29 FYCWDTAG----------QEKFGGLRDGYYIH---GQCAIIMFDVTARLTYKN--VPTWHRDLCRVCENIPIVLCGNKVD 93 (186)
Q Consensus 29 l~l~Dt~G----------~~~~~~~~~~~~~~---ad~vilv~D~~~~~s~~~--i~~~~~~~~~~~~~~p~ilv~nK~D 93 (186)
+.|.|.|| ++.+..+...|+.. -.++++++|+.....-.+ +..|+.. .+.|++|++||+|
T Consensus 72 ~~lVDlPGYGyAkv~k~~~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~-----~~i~~~vv~tK~D 146 (200)
T COG0218 72 LRLVDLPGYGYAKVPKEVKEKWKKLIEEYLEKRANLKGVVLLIDARHPPKDLDREMIEFLLE-----LGIPVIVVLTKAD 146 (200)
T ss_pred EEEEeCCCcccccCCHHHHHHHHHHHHHHHhhchhheEEEEEEECCCCCcHHHHHHHHHHHH-----cCCCeEEEEEccc
Confidence 67789999 23444455666653 578999999987655432 2344433 3799999999999
Q ss_pred CCCcccChHHH-HHHHHcC----Cc--EEEeccCCCCCchHHHHHHHHHHhC
Q 029875 94 VKNRQVKAKQV-TFHRKKN----LQ--YYEISAKSNYNFEKPFLYLARKLAG 138 (186)
Q Consensus 94 l~~~~~~~~~~-~~~~~~~----~~--~~~~Sa~~~~gi~~l~~~l~~~i~~ 138 (186)
........+.. ..+...+ .. ++.+|+.++.|++++...|...+..
T Consensus 147 Ki~~~~~~k~l~~v~~~l~~~~~~~~~~~~~ss~~k~Gi~~l~~~i~~~~~~ 198 (200)
T COG0218 147 KLKKSERNKQLNKVAEELKKPPPDDQWVVLFSSLKKKGIDELKAKILEWLKE 198 (200)
T ss_pred cCChhHHHHHHHHHHHHhcCCCCccceEEEEecccccCHHHHHHHHHHHhhc
Confidence 87543332222 2222222 22 7889999999999999999887753
No 292
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=98.35 E-value=4.3e-06 Score=70.70 Aligned_cols=117 Identities=18% Similarity=0.149 Sum_probs=77.5
Q ss_pred eEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChh---hHHhHHH--HHHHHHhhcCCCCEE
Q 029875 12 GVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARL---TYKNVPT--WHRDLCRVCENIPIV 86 (186)
Q Consensus 12 g~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~---s~~~i~~--~~~~~~~~~~~~p~i 86 (186)
|+.....+..++.....+.|.|+||+..|..-.-.-...||+.+||+|++-.. +|+.-.+ -+..+.+...-.-++
T Consensus 240 GvTm~v~~~~fes~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lgi~qli 319 (603)
T KOG0458|consen 240 GVTMDVKTTWFESKSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLGISQLI 319 (603)
T ss_pred ceeEEeeeEEEecCceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcCcceEE
Confidence 34444445555677788899999999999887777788899999999998632 3331111 122233333456799
Q ss_pred EEEeCCCCCCcc------cChHHHHHH-HHcC-----CcEEEeccCCCCCchHH
Q 029875 87 LCGNKVDVKNRQ------VKAKQVTFH-RKKN-----LQYYEISAKSNYNFEKP 128 (186)
Q Consensus 87 lv~nK~Dl~~~~------~~~~~~~~~-~~~~-----~~~~~~Sa~~~~gi~~l 128 (186)
|++||+|+.+.. +..+..-+. +..| +.++.||+.+|+|+-..
T Consensus 320 vaiNKmD~V~Wsq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~ 373 (603)
T KOG0458|consen 320 VAINKMDLVSWSQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKI 373 (603)
T ss_pred EEeecccccCccHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCccccc
Confidence 999999998622 222222333 3333 47999999999997654
No 293
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=98.35 E-value=2.9e-06 Score=63.87 Aligned_cols=99 Identities=12% Similarity=0.073 Sum_probs=62.2
Q ss_pred EEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCE--EEEEeCCCCCCccc--ChH
Q 029875 27 IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI--VLCGNKVDVKNRQV--KAK 102 (186)
Q Consensus 27 ~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~--ilv~nK~Dl~~~~~--~~~ 102 (186)
....+.+|.|..-..... .. -++++|.|+|+.+..+... .+.. .... ++++||+|+.+... ...
T Consensus 92 ~D~iiIEt~G~~l~~~~~-~~--l~~~~i~vvD~~~~~~~~~--~~~~-------qi~~ad~~~~~k~d~~~~~~~~~~~ 159 (199)
T TIGR00101 92 LEMVFIESGGDNLSATFS-PE--LADLTIFVIDVAAGDKIPR--KGGP-------GITRSDLLVINKIDLAPMVGADLGV 159 (199)
T ss_pred CCEEEEECCCCCcccccc-hh--hhCcEEEEEEcchhhhhhh--hhHh-------HhhhccEEEEEhhhccccccccHHH
Confidence 445566888842212221 12 2688999999997655321 1111 2333 78899999974211 111
Q ss_pred HHHHHHH--cCCcEEEeccCCCCCchHHHHHHHHHHh
Q 029875 103 QVTFHRK--KNLQYYEISAKSNYNFEKPFLYLARKLA 137 (186)
Q Consensus 103 ~~~~~~~--~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 137 (186)
..+..+. .+.+++++||++|.|++++|+++.+.+.
T Consensus 160 ~~~~~~~~~~~~~i~~~Sa~~g~gi~el~~~i~~~~~ 196 (199)
T TIGR00101 160 MERDAKKMRGEKPFIFTNLKTKEGLDTVIDWIEHYAL 196 (199)
T ss_pred HHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 2233333 3478999999999999999999997654
No 294
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=98.33 E-value=2.3e-06 Score=69.12 Aligned_cols=104 Identities=11% Similarity=0.000 Sum_probs=67.5
Q ss_pred EEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCcccChH---
Q 029875 26 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK--- 102 (186)
Q Consensus 26 ~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~--- 102 (186)
.+.+.|+||+|...-.. .....||.+++|.+....+..+.+. ..+.+ ..-++|+||+|+.+......
T Consensus 148 g~d~viieT~Gv~qs~~---~i~~~aD~vlvv~~p~~gd~iq~~k---~gi~E----~aDIiVVNKaDl~~~~~a~~~~~ 217 (332)
T PRK09435 148 GYDVILVETVGVGQSET---AVAGMVDFFLLLQLPGAGDELQGIK---KGIME----LADLIVINKADGDNKTAARRAAA 217 (332)
T ss_pred CCCEEEEECCCCccchh---HHHHhCCEEEEEecCCchHHHHHHH---hhhhh----hhheEEeehhcccchhHHHHHHH
Confidence 46778889999763222 2466799999998755444443322 22222 23489999999875331111
Q ss_pred -HHHHHHH-------cCCcEEEeccCCCCCchHHHHHHHHHHhCC
Q 029875 103 -QVTFHRK-------KNLQYYEISAKSNYNFEKPFLYLARKLAGD 139 (186)
Q Consensus 103 -~~~~~~~-------~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 139 (186)
....... +..+++.+||++|.||+++++.+.+++...
T Consensus 218 el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~~l 262 (332)
T PRK09435 218 EYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRAAL 262 (332)
T ss_pred HHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 1111111 225799999999999999999999988633
No 295
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=98.33 E-value=6e-07 Score=67.99 Aligned_cols=86 Identities=29% Similarity=0.412 Sum_probs=64.7
Q ss_pred cccceEEEEEEEEEECCeEEEEEEEeCCCcccc-----CCccccccccCcEEEEEEeCCChhhHHhHH---HHHHHHHhh
Q 029875 8 KATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF-----GGLRDGYYIHGQCAIIMFDVTARLTYKNVP---TWHRDLCRV 79 (186)
Q Consensus 8 ~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~-----~~~~~~~~~~ad~vilv~D~~~~~s~~~i~---~~~~~~~~~ 79 (186)
.+||.++-.+.++- +++.+.+||.+||+.+ .......+++.+++|+|||+...+--.++. .-++.+.+.
T Consensus 37 g~tidveHsh~Rfl---Gnl~LnlwDcGgqe~fmen~~~~q~d~iF~nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~ 113 (295)
T KOG3886|consen 37 GATIDVEHSHVRFL---GNLVLNLWDCGGQEEFMENYLSSQEDNIFRNVQVLIYVFDVESREMEKDFHYYQKCLEALLQN 113 (295)
T ss_pred CCcceeeehhhhhh---hhheeehhccCCcHHHHHHHHhhcchhhheeheeeeeeeeccchhhhhhHHHHHHHHHHHHhc
Confidence 46777777666665 6789999999999843 335667889999999999998875333333 344555666
Q ss_pred cCCCCEEEEEeCCCCCC
Q 029875 80 CENIPIVLCGNKVDVKN 96 (186)
Q Consensus 80 ~~~~p~ilv~nK~Dl~~ 96 (186)
.+...+.+...|+|+..
T Consensus 114 SP~AkiF~l~hKmDLv~ 130 (295)
T KOG3886|consen 114 SPEAKIFCLLHKMDLVQ 130 (295)
T ss_pred CCcceEEEEEeechhcc
Confidence 67888999999999974
No 296
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=98.27 E-value=1.6e-05 Score=63.16 Aligned_cols=109 Identities=18% Similarity=0.092 Sum_probs=73.3
Q ss_pred CeEEEEEEEeCCCccccC-------CccccccccCcEEEEEEeCCChhh-HHhHHHHHHH--------------------
Q 029875 24 CGKIRFYCWDTAGQEKFG-------GLRDGYYIHGQCAIIMFDVTARLT-YKNVPTWHRD-------------------- 75 (186)
Q Consensus 24 ~~~~~l~l~Dt~G~~~~~-------~~~~~~~~~ad~vilv~D~~~~~s-~~~i~~~~~~-------------------- 75 (186)
-+..++||.|+||.-.-. ...-..+++||++++|+|+....+ .+-+.+-++.
T Consensus 107 Y~ga~IQild~Pgii~gas~g~grG~~vlsv~R~ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~g 186 (365)
T COG1163 107 YKGAQIQLLDLPGIIEGASSGRGRGRQVLSVARNADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESG 186 (365)
T ss_pred ecCceEEEEcCcccccCcccCCCCcceeeeeeccCCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccC
Confidence 356788999999853322 234456789999999999987655 3223222221
Q ss_pred --------------------HHhhc--------------------------CCCCEEEEEeCCCCCCcccChHHHHHHHH
Q 029875 76 --------------------LCRVC--------------------------ENIPIVLCGNKVDVKNRQVKAKQVTFHRK 109 (186)
Q Consensus 76 --------------------~~~~~--------------------------~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~ 109 (186)
+.+.+ .-+|.++|.||+|+... ++...+.+.
T Consensus 187 GI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~~---e~~~~l~~~ 263 (365)
T COG1163 187 GIRINGTGPLTHLDEDTVRAILREYRIHNADVLIREDVTLDDLIDALEGNRVYKPALYVVNKIDLPGL---EELERLARK 263 (365)
T ss_pred CEEEecccccccCCHHHHHHHHHHhCcccceEEEecCCcHHHHHHHHhhcceeeeeEEEEecccccCH---HHHHHHHhc
Confidence 11100 01599999999998752 222233333
Q ss_pred cCCcEEEeccCCCCCchHHHHHHHHHHh
Q 029875 110 KNLQYYEISAKSNYNFEKPFLYLARKLA 137 (186)
Q Consensus 110 ~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 137 (186)
. .++.+||++|.|++++.+.+.+.+.
T Consensus 264 ~--~~v~isa~~~~nld~L~e~i~~~L~ 289 (365)
T COG1163 264 P--NSVPISAKKGINLDELKERIWDVLG 289 (365)
T ss_pred c--ceEEEecccCCCHHHHHHHHHHhhC
Confidence 2 7999999999999999999998874
No 297
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=98.26 E-value=2.5e-06 Score=70.53 Aligned_cols=85 Identities=21% Similarity=0.275 Sum_probs=57.7
Q ss_pred ccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhh----------HHhHHHHHHHH
Q 029875 7 GKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLT----------YKNVPTWHRDL 76 (186)
Q Consensus 7 ~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s----------~~~i~~~~~~~ 76 (186)
+.+|.|+.-. .+.+. ....+.++|+|||...+.-|..++.++++||||+++++.+- +.+....++.+
T Consensus 219 r~~T~Gi~e~--~f~~~-~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i 295 (389)
T PF00503_consen 219 RVKTTGITEI--DFNFS-GSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESI 295 (389)
T ss_dssp ----SSEEEE--EEEE--TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHH
T ss_pred cCCCCCeeEE--EEEee-cccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHH
Confidence 3567776544 44431 44567788999999999999999999999999999875432 23323344444
Q ss_pred Hhh--cCCCCEEEEEeCCCC
Q 029875 77 CRV--CENIPIVLCGNKVDV 94 (186)
Q Consensus 77 ~~~--~~~~p~ilv~nK~Dl 94 (186)
.+. ..+.|++|+.||+|+
T Consensus 296 ~~~~~~~~~~iil~lnK~D~ 315 (389)
T PF00503_consen 296 CNNPWFKNTPIILFLNKIDL 315 (389)
T ss_dssp HTSGGGTTSEEEEEEE-HHH
T ss_pred HhCcccccCceEEeeecHHH
Confidence 443 268999999999996
No 298
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=98.26 E-value=4.6e-06 Score=68.57 Aligned_cols=101 Identities=21% Similarity=0.246 Sum_probs=68.9
Q ss_pred eEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc--CCCCEEEEE
Q 029875 12 GVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCG 89 (186)
Q Consensus 12 g~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~--~~~p~ilv~ 89 (186)
|+.+.+..++.+.....+.|.||||++.|..-.=..+.-+|.+|+|+|+...-.-+. .++.+.| .++|++-.+
T Consensus 66 GISVtsSVMqF~Y~~~~iNLLDTPGHeDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT-----~KLfeVcrlR~iPI~TFi 140 (528)
T COG4108 66 GISVTSSVMQFDYADCLVNLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQT-----LKLFEVCRLRDIPIFTFI 140 (528)
T ss_pred CceEEeeEEEeccCCeEEeccCCCCccccchhHHHHHHhhheeeEEEecccCccHHH-----HHHHHHHhhcCCceEEEe
Confidence 444555555555566677788999999998766666777999999999987532221 2233333 589999999
Q ss_pred eCCCCCCcccChHHHHHHHHcCCcEEEe
Q 029875 90 NKVDVKNRQVKAKQVTFHRKKNLQYYEI 117 (186)
Q Consensus 90 nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 117 (186)
||.|...+...+-.-+..+++++.+..+
T Consensus 141 NKlDR~~rdP~ELLdEiE~~L~i~~~Pi 168 (528)
T COG4108 141 NKLDREGRDPLELLDEIEEELGIQCAPI 168 (528)
T ss_pred eccccccCChHHHHHHHHHHhCcceecc
Confidence 9999876655444445556666655443
No 299
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.25 E-value=5.5e-06 Score=68.10 Aligned_cols=124 Identities=14% Similarity=0.001 Sum_probs=82.7
Q ss_pred cccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEE
Q 029875 8 KATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVL 87 (186)
Q Consensus 8 ~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~il 87 (186)
..|+...|+.... ....+.|+|+||.+++-...-..+...|+++||+|.++.-..+.... -.+.........++
T Consensus 35 G~TiDlg~~y~~~----~d~~~~fIDvpgh~~~i~~miag~~~~d~alLvV~~deGl~~qtgEh--L~iLdllgi~~gii 108 (447)
T COG3276 35 GITIDLGFYYRKL----EDGVMGFIDVPGHPDFISNLLAGLGGIDYALLVVAADEGLMAQTGEH--LLILDLLGIKNGII 108 (447)
T ss_pred CceEeeeeEeccC----CCCceEEeeCCCcHHHHHHHHhhhcCCceEEEEEeCccCcchhhHHH--HHHHHhcCCCceEE
Confidence 3456555655444 44488899999999886666666778999999999976433222111 11222233456799
Q ss_pred EEeCCCCCCcc-cChHHHHHHHHc---CCcEEEeccCCCCCchHHHHHHHHHHh
Q 029875 88 CGNKVDVKNRQ-VKAKQVTFHRKK---NLQYYEISAKSNYNFEKPFLYLARKLA 137 (186)
Q Consensus 88 v~nK~Dl~~~~-~~~~~~~~~~~~---~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 137 (186)
|.||+|..+.. +.+...+..... +.+++.+|+++|.||+++-+.|.....
T Consensus 109 vltk~D~~d~~r~e~~i~~Il~~l~l~~~~i~~~s~~~g~GI~~Lk~~l~~L~~ 162 (447)
T COG3276 109 VLTKADRVDEARIEQKIKQILADLSLANAKIFKTSAKTGRGIEELKNELIDLLE 162 (447)
T ss_pred EEeccccccHHHHHHHHHHHHhhcccccccccccccccCCCHHHHHHHHHHhhh
Confidence 99999998532 222222222222 367899999999999999999998773
No 300
>PRK01889 GTPase RsgA; Reviewed
Probab=98.23 E-value=7.2e-06 Score=67.06 Aligned_cols=83 Identities=10% Similarity=0.089 Sum_probs=59.5
Q ss_pred cccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCcccChHHHHHHH-HcCCcEEEeccCCCCCch
Q 029875 48 YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHR-KKNLQYYEISAKSNYNFE 126 (186)
Q Consensus 48 ~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~gi~ 126 (186)
+.++|.+++|+++...-+...+.+++..+... +.|.+||.||+||.+... .....+.. ..+++++.+|+++|.|++
T Consensus 110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~~--~i~piIVLNK~DL~~~~~-~~~~~~~~~~~g~~Vi~vSa~~g~gl~ 186 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRIERYLALAWES--GAEPVIVLTKADLCEDAE-EKIAEVEALAPGVPVLAVSALDGEGLD 186 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHHHHHHHHHHHc--CCCEEEEEEChhcCCCHH-HHHHHHHHhCCCCcEEEEECCCCccHH
Confidence 68899999999997544555566666665553 678899999999975311 11112221 346789999999999999
Q ss_pred HHHHHHH
Q 029875 127 KPFLYLA 133 (186)
Q Consensus 127 ~l~~~l~ 133 (186)
++...+.
T Consensus 187 ~L~~~L~ 193 (356)
T PRK01889 187 VLAAWLS 193 (356)
T ss_pred HHHHHhh
Confidence 9888874
No 301
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=98.22 E-value=1.3e-06 Score=67.57 Aligned_cols=106 Identities=13% Similarity=0.132 Sum_probs=56.7
Q ss_pred EEEEEeCCCccccCCcccccc--------ccCcEEEEEEeCCChh---hHHhHHHHHHHHHh-hcCCCCEEEEEeCCCCC
Q 029875 28 RFYCWDTAGQEKFGGLRDGYY--------IHGQCAIIMFDVTARL---TYKNVPTWHRDLCR-VCENIPIVLCGNKVDVK 95 (186)
Q Consensus 28 ~l~l~Dt~G~~~~~~~~~~~~--------~~ad~vilv~D~~~~~---s~~~i~~~~~~~~~-~~~~~p~ilv~nK~Dl~ 95 (186)
.+.|+|||||-++...|...- ...-++++++|+.... +|-. .++-...- ...+.|.|.|.||+|+.
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s--~~L~s~s~~~~~~lP~vnvlsK~Dl~ 169 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVS--SLLLSLSIMLRLELPHVNVLSKIDLL 169 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHH--HHHHHHHHHHHHTSEEEEEE--GGGS
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHH--HHHHHHHHHhhCCCCEEEeeeccCcc
Confidence 566889999987655544333 5678999999996433 3322 22222221 12379999999999997
Q ss_pred CcccChHH------------------H----HHHH---HcC-C-cEEEeccCCCCCchHHHHHHHHHH
Q 029875 96 NRQVKAKQ------------------V----TFHR---KKN-L-QYYEISAKSNYNFEKPFLYLARKL 136 (186)
Q Consensus 96 ~~~~~~~~------------------~----~~~~---~~~-~-~~~~~Sa~~~~gi~~l~~~l~~~i 136 (186)
+.. .... . .++. .++ . +++.+|+.++.|+.+++..+-+.+
T Consensus 170 ~~~-~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~ 236 (238)
T PF03029_consen 170 SKY-LEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN 236 (238)
T ss_dssp -HH-HHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred cch-hHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence 622 0000 0 1111 112 3 699999999999999998876654
No 302
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=98.20 E-value=2.5e-05 Score=66.21 Aligned_cols=131 Identities=14% Similarity=0.089 Sum_probs=91.7
Q ss_pred CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCC
Q 029875 3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCEN 82 (186)
Q Consensus 3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~ 82 (186)
++..+..|.+..+........|....+.|-|.+-. ....+...- ..+|+++++||++++.||..+....+..... ..
T Consensus 450 ~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~cDv~~~~YDsS~p~sf~~~a~v~~~~~~~-~~ 526 (625)
T KOG1707|consen 450 MSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AACDVACLVYDSSNPRSFEYLAEVYNKYFDL-YK 526 (625)
T ss_pred cccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ceeeeEEEecccCCchHHHHHHHHHHHhhhc-cC
Confidence 34466677777776666666677777778788755 333333333 7799999999999999999876655444333 57
Q ss_pred CCEEEEEeCCCCCCcc---cChHHHHHHHHcCCc-EEEeccCCCCCchHHHHHHHHHHhC
Q 029875 83 IPIVLCGNKVDVKNRQ---VKAKQVTFHRKKNLQ-YYEISAKSNYNFEKPFLYLARKLAG 138 (186)
Q Consensus 83 ~p~ilv~nK~Dl~~~~---~~~~~~~~~~~~~~~-~~~~Sa~~~~gi~~l~~~l~~~i~~ 138 (186)
.|+++|++|+|+.+.. ..+. -+++.+++++ -+.+|.++... .++|..|+.....
T Consensus 527 ~Pc~~va~K~dlDe~~Q~~~iqp-de~~~~~~i~~P~~~S~~~~~s-~~lf~kL~~~A~~ 584 (625)
T KOG1707|consen 527 IPCLMVATKADLDEVPQRYSIQP-DEFCRQLGLPPPIHISSKTLSS-NELFIKLATMAQY 584 (625)
T ss_pred CceEEEeeccccchhhhccCCCh-HHHHHhcCCCCCeeeccCCCCC-chHHHHHHHhhhC
Confidence 9999999999997533 1122 5788888875 56667664222 7899988876643
No 303
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=98.18 E-value=9.3e-07 Score=60.63 Aligned_cols=79 Identities=18% Similarity=0.183 Sum_probs=57.6
Q ss_pred cCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc-CCCCEEEEEeCCCCCCcccChHHHHHHHHcCCcEEEec
Q 029875 40 FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEIS 118 (186)
Q Consensus 40 ~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~S 118 (186)
+..+...++++++++++||+.++..+++.+ |...+.... .+.|.++++||.|+.+.. .++...+..++++|
T Consensus 36 ~~~~~~~~~~s~~~~~~v~~~~~~~s~~~~--~~~~i~~~~k~dl~~~~~~nk~dl~~~~------~~~~~~~~~~~~~s 107 (124)
T smart00010 36 IDVYDPTSYESFDVVLQCWRVDDRDSADNK--NVPEVLVGNKSDLPILVGGNRDVLEEER------QVATEEGLEFAETS 107 (124)
T ss_pred hhhccccccCCCCEEEEEEEccCHHHHHHH--hHHHHHhcCCCCCcEEEEeechhhHhhC------cCCHHHHHHHHHHh
Confidence 444556678899999999999999998765 877766543 468899999999984321 11222234567889
Q ss_pred cCCCCCch
Q 029875 119 AKSNYNFE 126 (186)
Q Consensus 119 a~~~~gi~ 126 (186)
+++|.|+.
T Consensus 108 ~~~~~~~~ 115 (124)
T smart00010 108 AKTPEEGE 115 (124)
T ss_pred CCCcchhh
Confidence 99999984
No 304
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=98.17 E-value=8.3e-06 Score=63.46 Aligned_cols=112 Identities=14% Similarity=0.162 Sum_probs=66.6
Q ss_pred EEEEEEEeCCCccccCC------cc-cccc-ccCcEEEEEEeCCC---hhhHHh-HHHHHHHHHhhcCCCCEEEEEeCCC
Q 029875 26 KIRFYCWDTAGQEKFGG------LR-DGYY-IHGQCAIIMFDVTA---RLTYKN-VPTWHRDLCRVCENIPIVLCGNKVD 93 (186)
Q Consensus 26 ~~~l~l~Dt~G~~~~~~------~~-~~~~-~~ad~vilv~D~~~---~~s~~~-i~~~~~~~~~~~~~~p~ilv~nK~D 93 (186)
....-|+|||||-.--. +. ..+. ..--++++++|... +.+|=. +-.....+. ....|+|++.||+|
T Consensus 115 ~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcSily--ktklp~ivvfNK~D 192 (366)
T KOG1532|consen 115 EFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACSILY--KTKLPFIVVFNKTD 192 (366)
T ss_pred ccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHHHHH--hccCCeEEEEeccc
Confidence 35566789999854211 11 1111 23567888888744 334432 111111111 14799999999999
Q ss_pred CCCcccC------hHHH-HHHH-------------------H--cCCcEEEeccCCCCCchHHHHHHHHHHhCC
Q 029875 94 VKNRQVK------AKQV-TFHR-------------------K--KNLQYYEISAKSNYNFEKPFLYLARKLAGD 139 (186)
Q Consensus 94 l~~~~~~------~~~~-~~~~-------------------~--~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 139 (186)
+.+...- -+.. +... + .++..+.+|+.+|.|.+++|..+-..+.+.
T Consensus 193 v~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~vdEy 266 (366)
T KOG1532|consen 193 VSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESVDEY 266 (366)
T ss_pred ccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHHHHH
Confidence 9763210 0100 0001 0 135689999999999999999998888664
No 305
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=98.17 E-value=2.1e-05 Score=59.40 Aligned_cols=99 Identities=13% Similarity=0.103 Sum_probs=60.3
Q ss_pred EEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCccc--ChHHH
Q 029875 27 IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV--KAKQV 104 (186)
Q Consensus 27 ~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~--~~~~~ 104 (186)
..+.|.+|.|.-.. ...+....+..+.|+|+.+.+... ...... ...|.++++||+|+.+... ..+..
T Consensus 103 ~d~IiIEt~G~l~~---~~~~~~~~~~~i~Vvd~~~~d~~~--~~~~~~-----~~~a~iiv~NK~Dl~~~~~~~~~~~~ 172 (207)
T TIGR00073 103 IDLLFIENVGNLVC---PADFDLGEHMRVVLLSVTEGDDKP--LKYPGM-----FKEADLIVINKADLAEAVGFDVEKMK 172 (207)
T ss_pred CCEEEEecCCCcCC---CcccccccCeEEEEEecCcccchh--hhhHhH-----HhhCCEEEEEHHHccccchhhHHHHH
Confidence 35567788772110 111223456667888887654211 111111 1467899999999975321 12223
Q ss_pred HHHHHcC--CcEEEeccCCCCCchHHHHHHHHH
Q 029875 105 TFHRKKN--LQYYEISAKSNYNFEKPFLYLARK 135 (186)
Q Consensus 105 ~~~~~~~--~~~~~~Sa~~~~gi~~l~~~l~~~ 135 (186)
...++.+ .+++.+||++|.|++++|+++.+.
T Consensus 173 ~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~ 205 (207)
T TIGR00073 173 ADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQ 205 (207)
T ss_pred HHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3333333 789999999999999999999875
No 306
>COG3596 Predicted GTPase [General function prediction only]
Probab=98.16 E-value=8.9e-06 Score=63.27 Aligned_cols=113 Identities=14% Similarity=0.172 Sum_probs=79.6
Q ss_pred EEEEEEeCCCccc-------cCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCc--
Q 029875 27 IRFYCWDTAGQEK-------FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR-- 97 (186)
Q Consensus 27 ~~l~l~Dt~G~~~-------~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~-- 97 (186)
=.+.||||||.+. |+.....++...|.++++.++.++.---+ ...+..+...+-+.++++++|.+|....
T Consensus 87 ~~l~lwDtPG~gdg~~~D~~~r~~~~d~l~~~DLvL~l~~~~draL~~d-~~f~~dVi~~~~~~~~i~~VtQ~D~a~p~~ 165 (296)
T COG3596 87 ENLVLWDTPGLGDGKDKDAEHRQLYRDYLPKLDLVLWLIKADDRALGTD-EDFLRDVIILGLDKRVLFVVTQADRAEPGR 165 (296)
T ss_pred cceEEecCCCcccchhhhHHHHHHHHHHhhhccEEEEeccCCCccccCC-HHHHHHHHHhccCceeEEEEehhhhhcccc
Confidence 4688999999765 66677788899999999999998752112 2344555555556899999999997532
Q ss_pred -------ccChHHHHHHHHc----------CCcEEEeccCCCCCchHHHHHHHHHHhCCC
Q 029875 98 -------QVKAKQVTFHRKK----------NLQYYEISAKSNYNFEKPFLYLARKLAGDP 140 (186)
Q Consensus 98 -------~~~~~~~~~~~~~----------~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~ 140 (186)
.......++..+. -.|++.+|...+-|++.+...++..+....
T Consensus 166 ~W~~~~~~p~~a~~qfi~~k~~~~~~~~q~V~pV~~~~~r~~wgl~~l~~ali~~lp~e~ 225 (296)
T COG3596 166 EWDSAGHQPSPAIKQFIEEKAEALGRLFQEVKPVVAVSGRLPWGLKELVRALITALPVEA 225 (296)
T ss_pred ccccccCCCCHHHHHHHHHHHHHHHHHHhhcCCeEEeccccCccHHHHHHHHHHhCcccc
Confidence 1222222222111 136888889999999999999999997443
No 307
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=98.14 E-value=1.1e-05 Score=70.94 Aligned_cols=76 Identities=18% Similarity=0.210 Sum_probs=58.7
Q ss_pred EEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCcc
Q 029875 19 DFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ 98 (186)
Q Consensus 19 ~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 98 (186)
++.+.+ .+++.|+||||+-.|..-....++-+|++|+|+|+...-..+.-.-|.+.... ++|.+++.||+|.....
T Consensus 69 s~~~~~-~~~iNlIDTPGHVDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~~---~vp~i~fiNKmDR~~a~ 144 (697)
T COG0480 69 TLFWKG-DYRINLIDTPGHVDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADKY---GVPRILFVNKMDRLGAD 144 (697)
T ss_pred EEEEcC-ceEEEEeCCCCccccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhhc---CCCeEEEEECccccccC
Confidence 333343 57888899999999999999999999999999999886554444445444333 79999999999987543
No 308
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=98.11 E-value=6.1e-06 Score=74.47 Aligned_cols=68 Identities=18% Similarity=0.150 Sum_probs=53.4
Q ss_pred eEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCC
Q 029875 25 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK 95 (186)
Q Consensus 25 ~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~ 95 (186)
..+.+.|+||||+..|.......++.+|++|+|+|+...-......-|.. +.. .++|+++++||+|+.
T Consensus 96 ~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~-~~~--~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQ-ALG--ERIRPVLTVNKMDRC 163 (843)
T ss_pred CceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHH-HHH--CCCCEEEEEECCccc
Confidence 46788999999999998877888899999999999997654443333332 322 378999999999987
No 309
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=98.10 E-value=1.5e-05 Score=66.40 Aligned_cols=126 Identities=14% Similarity=0.102 Sum_probs=79.3
Q ss_pred EEEEEEEEEECCeEEEEEEEeCCCcccc-CC--------ccccccccCcEEEEEEeC--CChhhHHhHHHHHHHHHhhc-
Q 029875 13 VEVHPLDFFTNCGKIRFYCWDTAGQEKF-GG--------LRDGYYIHGQCAIIMFDV--TARLTYKNVPTWHRDLCRVC- 80 (186)
Q Consensus 13 ~~~~~~~~~~~~~~~~l~l~Dt~G~~~~-~~--------~~~~~~~~ad~vilv~D~--~~~~s~~~i~~~~~~~~~~~- 80 (186)
-|.....++++|.++.|. ||+|...- .. ..+..+..||++++|+|+ ++-.+-..+...++....-+
T Consensus 304 RDaiea~v~~~G~~v~L~--DTAGiRe~~~~~iE~~gI~rA~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~ 381 (531)
T KOG1191|consen 304 RDAIEAQVTVNGVPVRLS--DTAGIREESNDGIEALGIERARKRIERADVILLVVDAEESDTESDLKIARILETEGVGLV 381 (531)
T ss_pred hhhheeEeecCCeEEEEE--eccccccccCChhHHHhHHHHHHHHhhcCEEEEEecccccccccchHHHHHHHHhccceE
Confidence 455566677788777665 99997762 11 123456789999999999 44333333333333332211
Q ss_pred ------CCCCEEEEEeCCCCCCc--ccChHHHHHHHHc---CCc-EEEeccCCCCCchHHHHHHHHHHhCCC
Q 029875 81 ------ENIPIVLCGNKVDVKNR--QVKAKQVTFHRKK---NLQ-YYEISAKSNYNFEKPFLYLARKLAGDP 140 (186)
Q Consensus 81 ------~~~p~ilv~nK~Dl~~~--~~~~~~~~~~~~~---~~~-~~~~Sa~~~~gi~~l~~~l~~~i~~~~ 140 (186)
...|++++.||.|+... ........+.... ..+ ..++|+++++|++++...+...+....
T Consensus 382 ~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~~~~~~~~~~~~i~~~vs~~tkeg~~~L~~all~~~~~~~ 453 (531)
T KOG1191|consen 382 VIVNKMEKQRIILVANKSDLVSKIPEMTKIPVVYPSAEGRSVFPIVVEVSCTTKEGCERLSTALLNIVERLV 453 (531)
T ss_pred EEeccccccceEEEechhhccCccccccCCceeccccccCcccceEEEeeechhhhHHHHHHHHHHHHHHhh
Confidence 24799999999999754 1111111111111 234 456999999999999999998887654
No 310
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=98.09 E-value=0.00012 Score=54.76 Aligned_cols=112 Identities=8% Similarity=-0.054 Sum_probs=69.8
Q ss_pred EEEEEEeCCCccccCCc-----------cccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcC---CCCEEEEEeCC
Q 029875 27 IRFYCWDTAGQEKFGGL-----------RDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE---NIPIVLCGNKV 92 (186)
Q Consensus 27 ~~l~l~Dt~G~~~~~~~-----------~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~---~~p~ilv~nK~ 92 (186)
..+.++||||....... ......++|++|+|+++.+ .+-.+ ...++.+.+.+. -.+++++.|++
T Consensus 49 ~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~~~g~~~illVi~~~~-~t~~d-~~~l~~l~~~fg~~~~~~~ivv~T~~ 126 (196)
T cd01852 49 RRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLSAPGPHAFLLVVPLGR-FTEEE-EQAVETLQELFGEKVLDHTIVLFTRG 126 (196)
T ss_pred eEEEEEECcCCCCccCChHHHHHHHHHHHHhcCCCCEEEEEEEECCC-cCHHH-HHHHHHHHHHhChHhHhcEEEEEECc
Confidence 36778899996544211 1223467899999999987 33222 233444444332 36889999999
Q ss_pred CCCCcc--------cChHHHHHHHHcCCcEEEec-----cCCCCCchHHHHHHHHHHhCCC
Q 029875 93 DVKNRQ--------VKAKQVTFHRKKNLQYYEIS-----AKSNYNFEKPFLYLARKLAGDP 140 (186)
Q Consensus 93 Dl~~~~--------~~~~~~~~~~~~~~~~~~~S-----a~~~~gi~~l~~~l~~~i~~~~ 140 (186)
|..... .......+....+-.|+.++ +..+.++.++++.+.+.+.+..
T Consensus 127 d~l~~~~~~~~~~~~~~~l~~l~~~c~~r~~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~~~ 187 (196)
T cd01852 127 DDLEGGTLEDYLENSCEALKRLLEKCGGRYVAFNNKAKGEEQEQQVKELLAKVESMVKENG 187 (196)
T ss_pred cccCCCcHHHHHHhccHHHHHHHHHhCCeEEEEeCCCCcchhHHHHHHHHHHHHHHHHhcC
Confidence 975432 11222344455555565554 4567789999999999888744
No 311
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=98.07 E-value=1e-05 Score=64.62 Aligned_cols=102 Identities=10% Similarity=-0.003 Sum_probs=65.2
Q ss_pred EEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCcccChH---
Q 029875 26 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK--- 102 (186)
Q Consensus 26 ~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~--- 102 (186)
.+.+.|.||+|.... ....+..+|.++++.+... -+++..+...+ ...|.+++.||+|+.+......
T Consensus 126 g~D~viidT~G~~~~---e~~i~~~aD~i~vv~~~~~---~~el~~~~~~l----~~~~~ivv~NK~Dl~~~~~~~~~~~ 195 (300)
T TIGR00750 126 GYDVIIVETVGVGQS---EVDIANMADTFVVVTIPGT---GDDLQGIKAGL----MEIADIYVVNKADGEGATNVTIARL 195 (300)
T ss_pred CCCEEEEeCCCCchh---hhHHHHhhceEEEEecCCc---cHHHHHHHHHH----hhhccEEEEEcccccchhHHHHHHH
Confidence 567788899985421 1235667888888854432 23333333333 2578899999999975432110
Q ss_pred H-----HHHHHH---cCCcEEEeccCCCCCchHHHHHHHHHHh
Q 029875 103 Q-----VTFHRK---KNLQYYEISAKSNYNFEKPFLYLARKLA 137 (186)
Q Consensus 103 ~-----~~~~~~---~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 137 (186)
. ..+..+ ++.+++.+||++|.|+++++.++.+.+.
T Consensus 196 ~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~ 238 (300)
T TIGR00750 196 MLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKT 238 (300)
T ss_pred HHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHH
Confidence 0 011111 2246999999999999999999998754
No 312
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.04 E-value=1.3e-05 Score=63.67 Aligned_cols=112 Identities=14% Similarity=0.103 Sum_probs=72.9
Q ss_pred EEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCcccChH----
Q 029875 27 IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK---- 102 (186)
Q Consensus 27 ~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~---- 102 (186)
-++.|.|.||++-.....-+-..=-|+.+||+.++.+..-=+.+.-+- ..+...-..+|++-||+|+..+..-.+
T Consensus 86 R~VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~-AleIigik~iiIvQNKIDlV~~E~AlE~y~q 164 (415)
T COG5257 86 RRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLM-ALEIIGIKNIIIVQNKIDLVSRERALENYEQ 164 (415)
T ss_pred EEEEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHH-HHhhhccceEEEEecccceecHHHHHHHHHH
Confidence 467788999998754433333333599999999987542111111111 111123467999999999975432222
Q ss_pred HHHHHHHc---CCcEEEeccCCCCCchHHHHHHHHHHhCC
Q 029875 103 QVTFHRKK---NLQYYEISAKSNYNFEKPFLYLARKLAGD 139 (186)
Q Consensus 103 ~~~~~~~~---~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 139 (186)
..+|.+.- +.+++.+||..+.||+-+++.+.+.+...
T Consensus 165 Ik~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP 204 (415)
T COG5257 165 IKEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPTP 204 (415)
T ss_pred HHHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCCCC
Confidence 22343322 46899999999999999999999998654
No 313
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=98.04 E-value=2.2e-05 Score=46.53 Aligned_cols=43 Identities=14% Similarity=0.352 Sum_probs=30.8
Q ss_pred CcEEEEEEeCCChh--hHHhHHHHHHHHHhhcCCCCEEEEEeCCC
Q 029875 51 GQCAIIMFDVTARL--TYKNVPTWHRDLCRVCENIPIVLCGNKVD 93 (186)
Q Consensus 51 ad~vilv~D~~~~~--s~~~i~~~~~~~~~~~~~~p~ilv~nK~D 93 (186)
+++++|++|+|... |.++-...++.++...++.|+++|.||+|
T Consensus 14 ~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~~~P~i~V~nK~D 58 (58)
T PF06858_consen 14 ADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFPNKPVIVVLNKID 58 (58)
T ss_dssp -SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTTTS-EEEEE--TT
T ss_pred cceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCEEEEEeccC
Confidence 68999999999865 45555677888888888999999999998
No 314
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=98.02 E-value=6.4e-05 Score=63.46 Aligned_cols=135 Identities=20% Similarity=0.263 Sum_probs=95.8
Q ss_pred ccccccceEEEEEEEEEEC--CeEEEEEEEeCCCccccCCcccccccc----CcEEEEEEeCCChhhH-HhHHHHHHHHH
Q 029875 5 VWGKATIGVEVHPLDFFTN--CGKIRFYCWDTAGQEKFGGLRDGYYIH----GQCAIIMFDVTARLTY-KNVPTWHRDLC 77 (186)
Q Consensus 5 ~~~~~Tig~~~~~~~~~~~--~~~~~l~l~Dt~G~~~~~~~~~~~~~~----ad~vilv~D~~~~~s~-~~i~~~~~~~~ 77 (186)
.++.+|.|.+|....+.-+ ....++.+|-.+|...+..+.+..+.. --++|+|.|.+.+..+ +++..|+..+.
T Consensus 49 e~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l~~t~vvIvlDlS~PW~~~esL~~W~~vl~ 128 (472)
T PF05783_consen 49 EDPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENLPNTLVVIVLDLSKPWNIMESLEKWLSVLR 128 (472)
T ss_pred CCCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCcccccceEEEEEecCCChHHHHHHHHHHHHHHH
Confidence 4577899999987765432 234789999998877777776665553 3688999999998754 34555544321
Q ss_pred h-------------------------hc-----C---------------------------------CCCEEEEEeCCCC
Q 029875 78 R-------------------------VC-----E---------------------------------NIPIVLCGNKVDV 94 (186)
Q Consensus 78 ~-------------------------~~-----~---------------------------------~~p~ilv~nK~Dl 94 (186)
. +. . ++|++||++|+|.
T Consensus 129 ~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~~~~~~~lpl~~g~l~~nlGipi~VV~tksD~ 208 (472)
T PF05783_consen 129 EHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSSDDESVLLPLGEGVLTENLGIPIVVVCTKSDK 208 (472)
T ss_pred HHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCcccccccccccccccccCCCCCcccccccCcceEEEEecccH
Confidence 1 10 0 1599999999997
Q ss_pred CC---cc----------cChHHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCC
Q 029875 95 KN---RQ----------VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD 139 (186)
Q Consensus 95 ~~---~~----------~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 139 (186)
.. +. +.+-.+.+|-.+|...+.+|++...|++-+++.|...+...
T Consensus 209 ~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~~n~~~L~~yi~h~l~~~ 266 (472)
T PF05783_consen 209 IETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEEKNLDLLYKYILHRLYGF 266 (472)
T ss_pred HHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeeccccccHHHHHHHHHHHhccC
Confidence 42 11 11123478888999999999999999999999999888653
No 315
>PTZ00416 elongation factor 2; Provisional
Probab=97.98 E-value=1.2e-05 Score=72.63 Aligned_cols=67 Identities=22% Similarity=0.189 Sum_probs=52.2
Q ss_pred EEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCC
Q 029875 26 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK 95 (186)
Q Consensus 26 ~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~ 95 (186)
...+.|+||||+..|.......++.+|++|+|+|++..-..+.. ..+..+.. .+.|++++.||+|+.
T Consensus 91 ~~~i~liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~-~~~~~~~~--~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 91 PFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTE-TVLRQALQ--ERIRPVLFINKVDRA 157 (836)
T ss_pred ceEEEEEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHH-HHHHHHHH--cCCCEEEEEEChhhh
Confidence 57888999999998877778888999999999999886443332 23333333 368999999999986
No 316
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=97.93 E-value=2e-05 Score=67.81 Aligned_cols=70 Identities=19% Similarity=0.226 Sum_probs=55.9
Q ss_pred CCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCC
Q 029875 23 NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK 95 (186)
Q Consensus 23 ~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~ 95 (186)
+++.+.++|.||||+-.|..-....++-+|++++|+|+...-.+..- +.++...+ .+.|+++|+||+|..
T Consensus 193 ~~KS~l~nilDTPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntE-r~ikhaiq--~~~~i~vviNKiDRL 262 (971)
T KOG0468|consen 193 KGKSYLMNILDTPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTE-RIIKHAIQ--NRLPIVVVINKVDRL 262 (971)
T ss_pred cCceeeeeeecCCCcccchHHHHHHhhhcceEEEEEEcccCceeeHH-HHHHHHHh--ccCcEEEEEehhHHH
Confidence 67789999999999999988888889999999999999987665532 22333222 379999999999963
No 317
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.92 E-value=0.00011 Score=58.19 Aligned_cols=100 Identities=17% Similarity=0.043 Sum_probs=74.2
Q ss_pred cccCCccccccccCcEEEEEEeCCChh-hHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCcccCh--HHHHHHHHcCCcE
Q 029875 38 EKFGGLRDGYYIHGQCAIIMFDVTARL-TYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA--KQVTFHRKKNLQY 114 (186)
Q Consensus 38 ~~~~~~~~~~~~~ad~vilv~D~~~~~-s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~--~~~~~~~~~~~~~ 114 (186)
++-..+.+.-+.++|-.++|+.+.+++ +..-+.+++-.+.. .++.-+|+.||+||.+..... +........+++.
T Consensus 67 ~Rkn~L~Rp~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~--~gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~gy~v 144 (301)
T COG1162 67 PRKNVLIRPPVANNDQAIIVVSLVDPDFNTNLLDRYLVLAEA--GGIEPVIVLNKIDLLDDEEAAVKELLREYEDIGYPV 144 (301)
T ss_pred cccCceeCCcccccceEEEEEeccCCCCCHHHHHHHHHHHHH--cCCcEEEEEEccccCcchHHHHHHHHHHHHhCCeeE
Confidence 344556666677788899999988876 55556666555444 367777779999998654444 3446677789999
Q ss_pred EEeccCCCCCchHHHHHHHHHHhCC
Q 029875 115 YEISAKSNYNFEKPFLYLARKLAGD 139 (186)
Q Consensus 115 ~~~Sa~~~~gi~~l~~~l~~~i~~~ 139 (186)
+.+|++++.|++++...+...+.-.
T Consensus 145 ~~~s~~~~~~~~~l~~~l~~~~svl 169 (301)
T COG1162 145 LFVSAKNGDGLEELAELLAGKITVL 169 (301)
T ss_pred EEecCcCcccHHHHHHHhcCCeEEE
Confidence 9999999999999999888776443
No 318
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=97.81 E-value=0.00026 Score=56.59 Aligned_cols=133 Identities=17% Similarity=0.208 Sum_probs=89.3
Q ss_pred cccccceEEEEEEEEEEC--CeEEEEEEEeCCCccccCCcccccccc----CcEEEEEEeCCChh-hHHhHHHHHHHHHh
Q 029875 6 WGKATIGVEVHPLDFFTN--CGKIRFYCWDTAGQEKFGGLRDGYYIH----GQCAIIMFDVTARL-TYKNVPTWHRDLCR 78 (186)
Q Consensus 6 ~~~~Tig~~~~~~~~~~~--~~~~~l~l~Dt~G~~~~~~~~~~~~~~----ad~vilv~D~~~~~-s~~~i~~~~~~~~~ 78 (186)
.+.+--|.+|....+.-+ ....++..|=.-|......+.+..+.- --+|||+.|++++- -.+.+..|..-+.+
T Consensus 77 ~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~aetlviltasms~Pw~~lesLqkWa~Vl~e 156 (473)
T KOG3905|consen 77 TVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLAETLVILTASMSNPWTLLESLQKWASVLRE 156 (473)
T ss_pred ccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCccceEEEEEEecCCcHHHHHHHHHHHHHHHH
Confidence 444555666654444322 234677778777765544444444332 24788999999984 45667788765432
Q ss_pred hcC--------------------------------------------------------------CCCEEEEEeCCCCCC
Q 029875 79 VCE--------------------------------------------------------------NIPIVLCGNKVDVKN 96 (186)
Q Consensus 79 ~~~--------------------------------------------------------------~~p~ilv~nK~Dl~~ 96 (186)
... ++|++||++|||...
T Consensus 157 hidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~de~~llPL~~dtLt~NlGi~vlVV~TK~D~~s 236 (473)
T KOG3905|consen 157 HIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSADEHVLLPLGQDTLTHNLGIPVLVVCTKCDAVS 236 (473)
T ss_pred HHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCccccccccccCCcchhhcCCCcEEEEEeccchhh
Confidence 210 149999999999832
Q ss_pred -----cc--------cChHHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhC
Q 029875 97 -----RQ--------VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG 138 (186)
Q Consensus 97 -----~~--------~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 138 (186)
.. +....++||..+|...+.+|++...||+-+...|+..+..
T Consensus 237 ~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KNidllyKYivhr~yG 291 (473)
T KOG3905|consen 237 VLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETKNIDLLYKYIVHRSYG 291 (473)
T ss_pred HhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeecccccchHHHHHHHHHHhcC
Confidence 11 2223458899999999999999999999999999998865
No 319
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=97.72 E-value=0.00016 Score=58.14 Aligned_cols=110 Identities=17% Similarity=0.117 Sum_probs=68.8
Q ss_pred CCeEEEEEEEeCCCccccCCcccccccc---CcEEEEEEeCCChhhHHhHH-HHHHHHHhhcCCCCEEEEEeCCCCCCc-
Q 029875 23 NCGKIRFYCWDTAGQEKFGGLRDGYYIH---GQCAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNR- 97 (186)
Q Consensus 23 ~~~~~~l~l~Dt~G~~~~~~~~~~~~~~---ad~vilv~D~~~~~s~~~i~-~~~~~~~~~~~~~p~ilv~nK~Dl~~~- 97 (186)
.+...++.+.|+||+.. +.+..+-+ .|..++|+|+...-.-+... -.+-++. ....++|.||+|+...
T Consensus 66 q~e~lq~tlvDCPGHas---LIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~----c~klvvvinkid~lpE~ 138 (522)
T KOG0461|consen 66 QGEQLQFTLVDCPGHAS---LIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELL----CKKLVVVINKIDVLPEN 138 (522)
T ss_pred ccccceeEEEeCCCcHH---HHHHHHhhhheeeeeeEEEehhcccccccchhhhhhhhh----ccceEEEEeccccccch
Confidence 56778999999999754 33444433 58899999997643211111 1122221 3457788888887532
Q ss_pred ccCh----HHHHHHHHc-------CCcEEEeccCCC----CCchHHHHHHHHHHhCC
Q 029875 98 QVKA----KQVTFHRKK-------NLQYYEISAKSN----YNFEKPFLYLARKLAGD 139 (186)
Q Consensus 98 ~~~~----~~~~~~~~~-------~~~~~~~Sa~~~----~gi~~l~~~l~~~i~~~ 139 (186)
+... ...++.+.+ +.|++++||+.| ++|.++...|..++.+.
T Consensus 139 qr~ski~k~~kk~~KtLe~t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~P 195 (522)
T KOG0461|consen 139 QRASKIEKSAKKVRKTLESTGFDGNSPIVEVSAADGYFKEEMIQELKEALESRIFEP 195 (522)
T ss_pred hhhhHHHHHHHHHHHHHHhcCcCCCCceeEEecCCCccchhHHHHHHHHHHHhhcCC
Confidence 1111 122333332 268999999999 78888888888888654
No 320
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=97.65 E-value=0.00039 Score=59.56 Aligned_cols=108 Identities=19% Similarity=0.198 Sum_probs=71.2
Q ss_pred eEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCcccChHHH
Q 029875 25 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQV 104 (186)
Q Consensus 25 ~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~ 104 (186)
+.+++.|+||||+-.|.--....++--|++|+|+|+...-.-+...-|.+ +.++ +.|.+..+||+|...+..-....
T Consensus 102 ~~~~iNiIDTPGHvDFT~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ-~~ry--~vP~i~FiNKmDRmGa~~~~~l~ 178 (721)
T KOG0465|consen 102 RDYRINIIDTPGHVDFTFEVERALRVLDGAVLVLDAVAGVESQTETVWRQ-MKRY--NVPRICFINKMDRMGASPFRTLN 178 (721)
T ss_pred ccceeEEecCCCceeEEEEehhhhhhccCeEEEEEcccceehhhHHHHHH-HHhc--CCCeEEEEehhhhcCCChHHHHH
Confidence 37888999999999999888999999999999999976543333334443 3333 89999999999987654433333
Q ss_pred HHHHHcCCc--EEEeccCCCCCchHHHHHHHHHHhCC
Q 029875 105 TFHRKKNLQ--YYEISAKSNYNFEKPFLYLARKLAGD 139 (186)
Q Consensus 105 ~~~~~~~~~--~~~~Sa~~~~gi~~l~~~l~~~i~~~ 139 (186)
.+..+++.+ .+.+ ..|.+..|..++..+..+
T Consensus 179 ~i~~kl~~~~a~vqi----Pig~e~~f~GvvDlv~~k 211 (721)
T KOG0465|consen 179 QIRTKLNHKPAVVQI----PIGSESNFKGVVDLVNGK 211 (721)
T ss_pred HHHhhcCCchheeEc----cccccccchhHHhhhhce
Confidence 343444422 1111 224444666666655543
No 321
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=97.64 E-value=0.00035 Score=47.55 Aligned_cols=67 Identities=24% Similarity=0.187 Sum_probs=41.4
Q ss_pred EEEECCeEEEEEEEeCCCccccCC---------ccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEE
Q 029875 19 DFFTNCGKIRFYCWDTAGQEKFGG---------LRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCG 89 (186)
Q Consensus 19 ~~~~~~~~~~l~l~Dt~G~~~~~~---------~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~ 89 (186)
.+.+++..+ .|+||||...-.. .....+..+|++++|+|++++.. +.....++.+. .+.|+++|.
T Consensus 41 ~~~~~~~~~--~~vDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~ii~vv~~~~~~~-~~~~~~~~~l~---~~~~~i~v~ 114 (116)
T PF01926_consen 41 QFEYNNKKF--ILVDTPGINDGESQDNDGKEIRKFLEQISKSDLIIYVVDASNPIT-EDDKNILRELK---NKKPIILVL 114 (116)
T ss_dssp EEEETTEEE--EEEESSSCSSSSHHHHHHHHHHHHHHHHCTESEEEEEEETTSHSH-HHHHHHHHHHH---TTSEEEEEE
T ss_pred eeeeceeeE--EEEeCCCCcccchhhHHHHHHHHHHHHHHHCCEEEEEEECCCCCC-HHHHHHHHHHh---cCCCEEEEE
Confidence 334455555 5889999643211 12223478999999999887422 12223333332 479999999
Q ss_pred eC
Q 029875 90 NK 91 (186)
Q Consensus 90 nK 91 (186)
||
T Consensus 115 NK 116 (116)
T PF01926_consen 115 NK 116 (116)
T ss_dssp ES
T ss_pred cC
Confidence 98
No 322
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=97.57 E-value=0.0002 Score=56.40 Aligned_cols=95 Identities=16% Similarity=0.049 Sum_probs=60.7
Q ss_pred CCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCC-CEEEEEeCCCCCCcc---
Q 029875 23 NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENI-PIVLCGNKVDVKNRQ--- 98 (186)
Q Consensus 23 ~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~-p~ilv~nK~Dl~~~~--- 98 (186)
+..+-.....|+||+..|-...-.-....|+.|||+.+++..--+.... +-..++. .. .++++.||+|+.+..
T Consensus 71 et~~rhyahVDcPGHaDYvKNMItgAaqmDgAILVVsA~dGpmPqTrEH-iLlarqv--Gvp~ivvflnK~Dmvdd~ell 147 (394)
T COG0050 71 ETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREH-ILLARQV--GVPYIVVFLNKVDMVDDEELL 147 (394)
T ss_pred ecCCceEEeccCCChHHHHHHHhhhHHhcCccEEEEEcCCCCCCcchhh-hhhhhhc--CCcEEEEEEecccccCcHHHH
Confidence 3344455667999999986655555667899999999998643222111 1111111 45 477899999998632
Q ss_pred --cChHHHHHHHHcCC-----cEEEeccC
Q 029875 99 --VKAKQVTFHRKKNL-----QYYEISAK 120 (186)
Q Consensus 99 --~~~~~~~~~~~~~~-----~~~~~Sa~ 120 (186)
+..+.+.+...+++ |++.-||.
T Consensus 148 elVemEvreLLs~y~f~gd~~Pii~gSal 176 (394)
T COG0050 148 ELVEMEVRELLSEYGFPGDDTPIIRGSAL 176 (394)
T ss_pred HHHHHHHHHHHHHcCCCCCCcceeechhh
Confidence 23344577788875 57777775
No 323
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=97.51 E-value=0.00049 Score=52.73 Aligned_cols=94 Identities=10% Similarity=0.077 Sum_probs=55.1
Q ss_pred eEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCE-EEEEeCCCCCCccc-ChH
Q 029875 25 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI-VLCGNKVDVKNRQV-KAK 102 (186)
Q Consensus 25 ~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~-ilv~nK~Dl~~~~~-~~~ 102 (186)
...++.++||||.. ..+ ...++.+|++++|+|++....... ...+..+.. .+.|. ++|.||+|+.+... ..+
T Consensus 81 ~~~~i~~vDtPg~~--~~~-l~~ak~aDvVllviDa~~~~~~~~-~~i~~~l~~--~g~p~vi~VvnK~D~~~~~~~~~~ 154 (225)
T cd01882 81 KKRRLTFIECPNDI--NAM-IDIAKVADLVLLLIDASFGFEMET-FEFLNILQV--HGFPRVMGVLTHLDLFKKNKTLRK 154 (225)
T ss_pred CCceEEEEeCCchH--HHH-HHHHHhcCEEEEEEecCcCCCHHH-HHHHHHHHH--cCCCeEEEEEeccccCCcHHHHHH
Confidence 45567788999853 222 233678999999999986543222 122333322 25674 45999999863211 111
Q ss_pred HH-----HHHHHc--CCcEEEeccCCCCC
Q 029875 103 QV-----TFHRKK--NLQYYEISAKSNYN 124 (186)
Q Consensus 103 ~~-----~~~~~~--~~~~~~~Sa~~~~g 124 (186)
.. .+..+. +.+++.+||+++-.
T Consensus 155 ~~~~l~~~~~~~~~~~~ki~~iSa~~~~~ 183 (225)
T cd01882 155 TKKRLKHRFWTEVYQGAKLFYLSGIVHGR 183 (225)
T ss_pred HHHHHHHHHHHhhCCCCcEEEEeeccCCC
Confidence 11 122111 35799999998853
No 324
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=97.47 E-value=0.00066 Score=55.27 Aligned_cols=108 Identities=16% Similarity=0.142 Sum_probs=68.9
Q ss_pred EEEEEEEeCCCccccCCccccccc--cCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCcccC---
Q 029875 26 KIRFYCWDTAGQEKFGGLRDGYYI--HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK--- 100 (186)
Q Consensus 26 ~~~l~l~Dt~G~~~~~~~~~~~~~--~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~--- 100 (186)
.-.+.|+|.+|+.+|....-..+. ..|..++|+.+.....+-. +.-+-.+.. -++|++++.+|+|+..++..
T Consensus 248 SKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tT-rEHLgl~~A--L~iPfFvlvtK~Dl~~~~~~~~t 324 (591)
T KOG1143|consen 248 SKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTT-REHLGLIAA--LNIPFFVLVTKMDLVDRQGLKKT 324 (591)
T ss_pred cceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCcccc-HHHHHHHHH--hCCCeEEEEEeeccccchhHHHH
Confidence 456788899999999876655554 3688899998876543221 122222222 38999999999999764211
Q ss_pred -----------------------hHHHH----HHHHcCCcEEEeccCCCCCchHHHHHHHHHHh
Q 029875 101 -----------------------AKQVT----FHRKKNLQYYEISAKSNYNFEKPFLYLARKLA 137 (186)
Q Consensus 101 -----------------------~~~~~----~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 137 (186)
.++.. ++..+-.|+|.+|+.+|+|+. ++..+...+.
T Consensus 325 v~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~-ll~~fLn~Ls 387 (591)
T KOG1143|consen 325 VKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLR-LLRTFLNCLS 387 (591)
T ss_pred HHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchh-HHHHHHhhcC
Confidence 11222 222223589999999999987 4444444443
No 325
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=97.44 E-value=0.00076 Score=55.09 Aligned_cols=107 Identities=10% Similarity=0.041 Sum_probs=65.3
Q ss_pred EEEEEEeCCCccccCCc--cccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCcccC----
Q 029875 27 IRFYCWDTAGQEKFGGL--RDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK---- 100 (186)
Q Consensus 27 ~~l~l~Dt~G~~~~~~~--~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~---- 100 (186)
-.+.|.||.|++.|-+. +-.+-...|..++++.+++..+.-. +.-+-.+. ....|++++.+|+|+.+....
T Consensus 201 klVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~t-kEHLgi~~--a~~lPviVvvTK~D~~~ddr~~~v~ 277 (527)
T COG5258 201 KLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMT-KEHLGIAL--AMELPVIVVVTKIDMVPDDRFQGVV 277 (527)
T ss_pred cEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhh-hHhhhhhh--hhcCCEEEEEEecccCcHHHHHHHH
Confidence 35668899999998543 3334467899999999988654211 11111111 147999999999999752211
Q ss_pred hHHHH----------------------HH-HHcC--CcEEEeccCCCCCchHHHHHHHHHHh
Q 029875 101 AKQVT----------------------FH-RKKN--LQYYEISAKSNYNFEKPFLYLARKLA 137 (186)
Q Consensus 101 ~~~~~----------------------~~-~~~~--~~~~~~Sa~~~~gi~~l~~~l~~~i~ 137 (186)
++... .+ +... .|++.+|+.+|.|++ ++..+...+.
T Consensus 278 ~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~Gld-lL~e~f~~Lp 338 (527)
T COG5258 278 EEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLD-LLDEFFLLLP 338 (527)
T ss_pred HHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHH-HHHHHHHhCC
Confidence 11111 11 1111 489999999999987 4444444443
No 326
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=97.43 E-value=0.0062 Score=50.68 Aligned_cols=118 Identities=14% Similarity=0.159 Sum_probs=71.7
Q ss_pred EEEEEE-CCeEEEEEEEeCCCccccCCc-----------------------------cccccc-cCcEEEEEE-eCC---
Q 029875 17 PLDFFT-NCGKIRFYCWDTAGQEKFGGL-----------------------------RDGYYI-HGQCAIIMF-DVT--- 61 (186)
Q Consensus 17 ~~~~~~-~~~~~~l~l~Dt~G~~~~~~~-----------------------------~~~~~~-~ad~vilv~-D~~--- 61 (186)
..++.. ++-+..+.|+||+|-..-..+ .+..+. ++++.|+|. |.+
T Consensus 80 AvEI~~~~~~~~~VrlIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~d 159 (492)
T TIGR02836 80 AVEININEGTKFKVRLVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITD 159 (492)
T ss_pred ceEEeccCCCcccEEEEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccc
Confidence 334433 466688888999984321110 233455 899999998 775
Q ss_pred -ChhhHHh-HHHHHHHHHhhcCCCCEEEEEeCCCCCCcccChHHHHHHHHcCCcEEEeccC--CCCCchHHHHHHHHHH
Q 029875 62 -ARLTYKN-VPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAK--SNYNFEKPFLYLARKL 136 (186)
Q Consensus 62 -~~~s~~~-i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~--~~~gi~~l~~~l~~~i 136 (186)
.+..+.. -.+|++.+++. ++|++++.||+|-..........++..+++.+++.+|+. +...|..+|+.++..+
T Consensus 160 I~Re~y~~aEe~~i~eLk~~--~kPfiivlN~~dp~~~et~~l~~~l~eky~vpvl~v~c~~l~~~DI~~il~~vL~EF 236 (492)
T TIGR02836 160 IPREDYVEAEERVIEELKEL--NKPFIILLNSTHPYHPETEALRQELEEKYDVPVLAMDVESMRESDILSVLEEVLYEF 236 (492)
T ss_pred cccccchHHHHHHHHHHHhc--CCCEEEEEECcCCCCchhHHHHHHHHHHhCCceEEEEHHHcCHHHHHHHHHHHHhcC
Confidence 1122222 24788888775 899999999999322221112235667778888877775 4445666666555444
No 327
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=97.42 E-value=0.00074 Score=57.33 Aligned_cols=119 Identities=15% Similarity=0.276 Sum_probs=90.0
Q ss_pred EEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc--CCCCEEEEEeCCC
Q 029875 16 HPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVD 93 (186)
Q Consensus 16 ~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~--~~~p~ilv~nK~D 93 (186)
+.+++.+++....+-+.|.+|.. -..|..++|++||||...+..+|+.+..+...+..+. ..+|+++++++.-
T Consensus 66 ~kkE~vv~gqs~lLlirdeg~~~-----~aQft~wvdavIfvf~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~ 140 (749)
T KOG0705|consen 66 FKKEVVVDGQSHLLLIRDEGGHP-----DAQFCQWVDAVVFVFSVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDH 140 (749)
T ss_pred ceeeEEeeccceEeeeecccCCc-----hhhhhhhccceEEEEEeccccCHHHHHHHHhhcccccccccchHHhhcCcch
Confidence 44677778888888888988732 2456778999999999999999999887776665443 5789999998876
Q ss_pred CCC----cccChHHHH-HHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCC
Q 029875 94 VKN----RQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD 139 (186)
Q Consensus 94 l~~----~~~~~~~~~-~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 139 (186)
..- .....+..+ .+....+.||+.++.+|.++..+|+.+...+...
T Consensus 141 iS~~~~rv~~da~~r~l~~~~krcsy~et~atyGlnv~rvf~~~~~k~i~~ 191 (749)
T KOG0705|consen 141 ISAKRPRVITDDRARQLSAQMKRCSYYETCATYGLNVERVFQEVAQKIVQL 191 (749)
T ss_pred hhcccccccchHHHHHHHHhcCccceeecchhhhhhHHHHHHHHHHHHHHH
Confidence 542 223333444 4445568899999999999999999999877654
No 328
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=97.37 E-value=0.00022 Score=51.61 Aligned_cols=64 Identities=17% Similarity=0.181 Sum_probs=45.1
Q ss_pred EEEEEEeCCCccc----cCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCC
Q 029875 27 IRFYCWDTAGQEK----FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKV 92 (186)
Q Consensus 27 ~~l~l~Dt~G~~~----~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~ 92 (186)
..+.|+||||... ...++..++..+|++|+|.+++...+-.....|.+..... ...+++|.||.
T Consensus 101 ~~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~--~~~~i~V~nk~ 168 (168)
T PF00350_consen 101 RNLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPD--KSRTIFVLNKA 168 (168)
T ss_dssp CSEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTT--CSSEEEEEE-G
T ss_pred cceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCC--CCeEEEEEcCC
Confidence 4578889999643 2356778889999999999999865544444555554443 34488999984
No 329
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=97.28 E-value=0.0011 Score=54.62 Aligned_cols=83 Identities=19% Similarity=0.199 Sum_probs=62.9
Q ss_pred eEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeC
Q 029875 12 GVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNK 91 (186)
Q Consensus 12 g~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK 91 (186)
|+.+.+-.++.+=+..++.++||||+-.|+--....++--||++.|||++-.-.-+.+.-|.+.-.. ++|-.+..||
T Consensus 87 gitiqsaav~fdwkg~rinlidtpghvdf~leverclrvldgavav~dasagve~qtltvwrqadk~---~ip~~~fink 163 (753)
T KOG0464|consen 87 GITIQSAAVNFDWKGHRINLIDTPGHVDFRLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQADKF---KIPAHCFINK 163 (753)
T ss_pred CceeeeeeeecccccceEeeecCCCcceEEEEHHHHHHHhcCeEEEEeccCCcccceeeeehhcccc---CCchhhhhhh
Confidence 3444444555555666777889999999999899999999999999999976555555567655333 7899999999
Q ss_pred CCCCCc
Q 029875 92 VDVKNR 97 (186)
Q Consensus 92 ~Dl~~~ 97 (186)
+|....
T Consensus 164 mdk~~a 169 (753)
T KOG0464|consen 164 MDKLAA 169 (753)
T ss_pred hhhhhh
Confidence 997543
No 330
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=97.25 E-value=0.0018 Score=47.54 Aligned_cols=86 Identities=9% Similarity=0.079 Sum_probs=60.1
Q ss_pred eEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCcccChHHH
Q 029875 25 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQV 104 (186)
Q Consensus 25 ~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~ 104 (186)
..+.+.++|||+... ......+..||.+++++..+.. +...+..+++.+.+. +.|+.+|.||+|.... ...+..
T Consensus 91 ~~~d~viiDtpp~~~--~~~~~~l~~aD~vliv~~~~~~-~~~~~~~~~~~l~~~--~~~~~vV~N~~~~~~~-~~~~~~ 164 (179)
T cd03110 91 EGAELIIIDGPPGIG--CPVIASLTGADAALLVTEPTPS-GLHDLERAVELVRHF--GIPVGVVINKYDLNDE-IAEEIE 164 (179)
T ss_pred cCCCEEEEECcCCCc--HHHHHHHHcCCEEEEEecCCcc-cHHHHHHHHHHHHHc--CCCEEEEEeCCCCCcc-hHHHHH
Confidence 567888999986532 2334567889999999999854 666666777666554 5678999999997533 233455
Q ss_pred HHHHHcCCcEEE
Q 029875 105 TFHRKKNLQYYE 116 (186)
Q Consensus 105 ~~~~~~~~~~~~ 116 (186)
+++++.+++++.
T Consensus 165 ~~~~~~~~~vl~ 176 (179)
T cd03110 165 DYCEEEGIPILG 176 (179)
T ss_pred HHHHHcCCCeEE
Confidence 667777777654
No 331
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=97.17 E-value=0.00077 Score=52.17 Aligned_cols=70 Identities=9% Similarity=0.086 Sum_probs=46.0
Q ss_pred EEEEEEEeCCCcccc-------------CCccccccc-cCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeC
Q 029875 26 KIRFYCWDTAGQEKF-------------GGLRDGYYI-HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNK 91 (186)
Q Consensus 26 ~~~l~l~Dt~G~~~~-------------~~~~~~~~~-~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK 91 (186)
...|.|+||||.... ..+...|++ .++++++|+|++...+-.......+.+.. ...|+++|+||
T Consensus 124 ~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld~--~~~rti~ViTK 201 (240)
T smart00053 124 VLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVDP--QGERTIGVITK 201 (240)
T ss_pred CCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHHH--cCCcEEEEEEC
Confidence 378899999997421 124556777 45699999998754322222233333332 36899999999
Q ss_pred CCCCCc
Q 029875 92 VDVKNR 97 (186)
Q Consensus 92 ~Dl~~~ 97 (186)
+|..++
T Consensus 202 ~D~~~~ 207 (240)
T smart00053 202 LDLMDE 207 (240)
T ss_pred CCCCCc
Confidence 998754
No 332
>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]
Probab=97.15 E-value=0.0011 Score=51.65 Aligned_cols=71 Identities=15% Similarity=0.182 Sum_probs=52.4
Q ss_pred eEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhh----------HHhHHHHHHHHHhhc--CCCCEEEEEeCC
Q 029875 25 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLT----------YKNVPTWHRDLCRVC--ENIPIVLCGNKV 92 (186)
Q Consensus 25 ~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s----------~~~i~~~~~~~~~~~--~~~p~ilv~nK~ 92 (186)
.+++++++|.+||+.-+.-|-..+.+..++|||+..+..+- +++....++.+.+.. ...-+|+..||.
T Consensus 200 dkv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~tisvIlFLNKq 279 (379)
T KOG0099|consen 200 DKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLRTISVILFLNKQ 279 (379)
T ss_pred cccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHhhhheeEEecHH
Confidence 45678999999999999999999999999999998875321 222222333333321 467899999999
Q ss_pred CCC
Q 029875 93 DVK 95 (186)
Q Consensus 93 Dl~ 95 (186)
|+.
T Consensus 280 Dll 282 (379)
T KOG0099|consen 280 DLL 282 (379)
T ss_pred HHH
Confidence 974
No 333
>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]
Probab=97.13 E-value=0.00015 Score=55.35 Aligned_cols=130 Identities=18% Similarity=0.148 Sum_probs=86.6
Q ss_pred ccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhh----------HHhHHHHHHHH
Q 029875 7 GKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLT----------YKNVPTWHRDL 76 (186)
Q Consensus 7 ~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s----------~~~i~~~~~~~ 76 (186)
..||.|+.-++..+ .++.+.+.|.+||..-+.-|-..+.+.-.+++++..+..+. .++-...+.-+
T Consensus 183 RvPTTGi~eypfdl----~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTI 258 (359)
T KOG0085|consen 183 RVPTTGIIEYPFDL----QKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTI 258 (359)
T ss_pred ecCcccceecCcch----hhheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHH
Confidence 35778866555444 67788899999999988889999988888888776654332 22223344444
Q ss_pred Hhhc--CCCCEEEEEeCCCCCCccc-----------------ChH-HHHHHH----HcC------CcEEEeccCCCCCch
Q 029875 77 CRVC--ENIPIVLCGNKVDVKNRQV-----------------KAK-QVTFHR----KKN------LQYYEISAKSNYNFE 126 (186)
Q Consensus 77 ~~~~--~~~p~ilv~nK~Dl~~~~~-----------------~~~-~~~~~~----~~~------~~~~~~Sa~~~~gi~ 126 (186)
..+. .+.++|+..||.|+.+..+ ... +.++.. ..+ +--..++|.+-.||.
T Consensus 259 i~yPWF~nssVIlFLNKkDlLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIR 338 (359)
T KOG0085|consen 259 ITYPWFQNSSVILFLNKKDLLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIR 338 (359)
T ss_pred hccccccCCceEEEechhhhhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHH
Confidence 4442 5899999999999864221 111 222221 112 123467888999999
Q ss_pred HHHHHHHHHHhCCC
Q 029875 127 KPFLYLARKLAGDP 140 (186)
Q Consensus 127 ~l~~~l~~~i~~~~ 140 (186)
-+|.++-..+++..
T Consensus 339 fVFaaVkDtiLq~~ 352 (359)
T KOG0085|consen 339 FVFAAVKDTILQLN 352 (359)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999988887653
No 334
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=97.05 E-value=0.0045 Score=50.62 Aligned_cols=107 Identities=12% Similarity=0.107 Sum_probs=64.9
Q ss_pred EEEEEEEeCCCccccCCccc--cccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCcccChHH
Q 029875 26 KIRFYCWDTAGQEKFGGLRD--GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQ 103 (186)
Q Consensus 26 ~~~l~l~Dt~G~~~~~~~~~--~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~ 103 (186)
--.+.|+|.+|+++|-...- +.-.-.|..++++-++-.. .--.+.-+..... -++|+++|.+|+|+....+-++.
T Consensus 218 aKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGI-iGmTKEHLgLALa--L~VPVfvVVTKIDMCPANiLqEt 294 (641)
T KOG0463|consen 218 AKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGI-IGMTKEHLGLALA--LHVPVFVVVTKIDMCPANILQET 294 (641)
T ss_pred ceeEEEEeccchhhhhheeeeccccCCCCceEEEecccccc-eeccHHhhhhhhh--hcCcEEEEEEeeccCcHHHHHHH
Confidence 35678999999999865432 2223467778887665431 0000111111111 37999999999999876665554
Q ss_pred HHHH----HHcC--------------------------CcEEEeccCCCCCchHHHHHHHHHH
Q 029875 104 VTFH----RKKN--------------------------LQYYEISAKSNYNFEKPFLYLARKL 136 (186)
Q Consensus 104 ~~~~----~~~~--------------------------~~~~~~Sa~~~~gi~~l~~~l~~~i 136 (186)
.++. +..+ +++|.+|-.+|.|+. ++......+
T Consensus 295 mKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~-LLkmFLNll 356 (641)
T KOG0463|consen 295 MKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLP-LLKMFLNLL 356 (641)
T ss_pred HHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChH-HHHHHHhhc
Confidence 3222 1111 478999999999986 444444333
No 335
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=96.94 E-value=0.0025 Score=52.39 Aligned_cols=106 Identities=16% Similarity=0.132 Sum_probs=69.0
Q ss_pred eEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCCh---hhHHhHHHHHHHHHh--hcCCCCEEEEEeCCCCCCcc-
Q 029875 25 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTAR---LTYKNVPTWHRDLCR--VCENIPIVLCGNKVDVKNRQ- 98 (186)
Q Consensus 25 ~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~---~s~~~i~~~~~~~~~--~~~~~p~ilv~nK~Dl~~~~- 98 (186)
..-++.+.|+||+..|....-.-.+.||..++|+.+... ..|+.=-+..+...- ...-..+|++.||+|-+...
T Consensus 155 e~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lVv~vNKMddPtvnW 234 (501)
T KOG0459|consen 155 ENKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNW 234 (501)
T ss_pred cceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceEEEEEEeccCCccCc
Confidence 445777889999999887777777889999999988543 133322112222221 12357899999999987422
Q ss_pred -------cChHHHHHHHHcC------CcEEEeccCCCCCchHHHH
Q 029875 99 -------VKAKQVTFHRKKN------LQYYEISAKSNYNFEKPFL 130 (186)
Q Consensus 99 -------~~~~~~~~~~~~~------~~~~~~Sa~~~~gi~~l~~ 130 (186)
...+...+.+..+ ..++.||..+|.++.+...
T Consensus 235 s~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~ 279 (501)
T KOG0459|consen 235 SNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD 279 (501)
T ss_pred chhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhccc
Confidence 1122223444333 3599999999999987665
No 336
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=96.92 E-value=0.0034 Score=46.13 Aligned_cols=45 Identities=20% Similarity=0.288 Sum_probs=29.2
Q ss_pred cEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCc
Q 029875 52 QCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR 97 (186)
Q Consensus 52 d~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 97 (186)
|++++|+|+..+.+-.. ..+.+.+.-...+.|+++|.||+|+.+.
T Consensus 1 DvVl~VvDar~p~~~~~-~~i~~~~~l~~~~kp~IlVlNK~DL~~~ 45 (172)
T cd04178 1 DVILEVLDARDPLGCRC-PQVEEAVLQAGGNKKLVLVLNKIDLVPK 45 (172)
T ss_pred CEEEEEEECCCCCCCCC-HHHHHHHHhccCCCCEEEEEehhhcCCH
Confidence 78999999988643322 1222222111136899999999999643
No 337
>COG1161 Predicted GTPases [General function prediction only]
Probab=96.89 E-value=0.001 Score=53.71 Aligned_cols=93 Identities=22% Similarity=0.200 Sum_probs=64.9
Q ss_pred eCCCc-cccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCcccChH-HHHHHHHc
Q 029875 33 DTAGQ-EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK-QVTFHRKK 110 (186)
Q Consensus 33 Dt~G~-~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~-~~~~~~~~ 110 (186)
+.+|+ .++.......+..+|+|+-|+|+.++.+-.. ..+.+...+.|.++|+||+|+.+...... ...+.+..
T Consensus 16 ~~~g~~~k~~~~~~~~~~~~d~vvevvDar~P~~s~~-----~~l~~~v~~k~~i~vlNK~DL~~~~~~~~W~~~~~~~~ 90 (322)
T COG1161 16 WFPGHMKKAKRQLKEVLKSVDVVVEVVDARDPLGTRN-----PELERIVKEKPKLLVLNKADLAPKEVTKKWKKYFKKEE 90 (322)
T ss_pred CCCCchHHHHHHHHHhcccCCEEEEEEeccccccccC-----ccHHHHHccCCcEEEEehhhcCCHHHHHHHHHHHHhcC
Confidence 33553 4556667778889999999999999876432 33334444677799999999987655333 22344444
Q ss_pred CCcEEEeccCCCCCchHHHH
Q 029875 111 NLQYYEISAKSNYNFEKPFL 130 (186)
Q Consensus 111 ~~~~~~~Sa~~~~gi~~l~~ 130 (186)
+...+.++++.+.+...+..
T Consensus 91 ~~~~~~v~~~~~~~~~~i~~ 110 (322)
T COG1161 91 GIKPIFVSAKSRQGGKKIRK 110 (322)
T ss_pred CCccEEEEeecccCccchHH
Confidence 67788999998888776664
No 338
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=96.75 E-value=0.0028 Score=47.20 Aligned_cols=98 Identities=9% Similarity=0.017 Sum_probs=57.9
Q ss_pred EEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcC--CCCEEEEEeCCCCCCcccC--hH
Q 029875 27 IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE--NIPIVLCGNKVDVKNRQVK--AK 102 (186)
Q Consensus 27 ~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~--~~p~ilv~nK~Dl~~~~~~--~~ 102 (186)
..+-|+..+|.-- ..-++.-..+.-|+|+|.+..+. + .++-.+ ..-=++|+||.||.+...- +.
T Consensus 97 ~Dll~iEs~GNL~---~~~sp~L~d~~~v~VidvteGe~---~------P~K~gP~i~~aDllVInK~DLa~~v~~dlev 164 (202)
T COG0378 97 LDLLFIESVGNLV---CPFSPDLGDHLRVVVIDVTEGED---I------PRKGGPGIFKADLLVINKTDLAPYVGADLEV 164 (202)
T ss_pred CCEEEEecCccee---cccCcchhhceEEEEEECCCCCC---C------cccCCCceeEeeEEEEehHHhHHHhCccHHH
Confidence 4555666666111 11122233458889999887532 0 011011 1134688999999753322 22
Q ss_pred HHHHHHHc--CCcEEEeccCCCCCchHHHHHHHHHH
Q 029875 103 QVTFHRKK--NLQYYEISAKSNYNFEKPFLYLARKL 136 (186)
Q Consensus 103 ~~~~~~~~--~~~~~~~Sa~~~~gi~~l~~~l~~~i 136 (186)
..+-+++. +.+++++|+++|.|+++++.++....
T Consensus 165 m~~da~~~np~~~ii~~n~ktg~G~~~~~~~i~~~~ 200 (202)
T COG0378 165 MARDAKEVNPEAPIIFTNLKTGEGLDEWLRFIEPQA 200 (202)
T ss_pred HHHHHHHhCCCCCEEEEeCCCCcCHHHHHHHHHhhc
Confidence 22333333 47899999999999999999987654
No 339
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=96.72 E-value=0.005 Score=49.69 Aligned_cols=106 Identities=15% Similarity=0.022 Sum_probs=63.6
Q ss_pred EEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCC
Q 029875 14 EVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVD 93 (186)
Q Consensus 14 ~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~D 93 (186)
+..+..++. .+-...=.|+||+..|-...-.-...-|++|+|+.++|..=-+ .+.-+-..++ ..-..+++..||.|
T Consensus 106 n~aHveYeT--a~RhYaH~DCPGHADYIKNMItGaaqMDGaILVVaatDG~MPQ-TrEHlLLArQ-VGV~~ivvfiNKvD 181 (449)
T KOG0460|consen 106 NAAHVEYET--AKRHYAHTDCPGHADYIKNMITGAAQMDGAILVVAATDGPMPQ-TREHLLLARQ-VGVKHIVVFINKVD 181 (449)
T ss_pred eeeeeeeec--cccccccCCCCchHHHHHHhhcCccccCceEEEEEcCCCCCcc-hHHHHHHHHH-cCCceEEEEEeccc
Confidence 344444433 3334445599999988655555556679999999999863211 1111111122 22355889999999
Q ss_pred CCCcc-----cChHHHHHHHHcCC-----cEEEecc---CCCC
Q 029875 94 VKNRQ-----VKAKQVTFHRKKNL-----QYYEISA---KSNY 123 (186)
Q Consensus 94 l~~~~-----~~~~~~~~~~~~~~-----~~~~~Sa---~~~~ 123 (186)
+.+.. +.-+.+++..++++ |++.-|| +.|.
T Consensus 182 ~V~d~e~leLVEmE~RElLse~gf~Gd~~PvI~GSAL~ALeg~ 224 (449)
T KOG0460|consen 182 LVDDPEMLELVEMEIRELLSEFGFDGDNTPVIRGSALCALEGR 224 (449)
T ss_pred ccCCHHHHHHHHHHHHHHHHHcCCCCCCCCeeecchhhhhcCC
Confidence 98432 33345677788864 6776655 4553
No 340
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=96.69 E-value=0.0041 Score=54.75 Aligned_cols=80 Identities=18% Similarity=0.170 Sum_probs=57.4
Q ss_pred cceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhh-cCCCCEEEE
Q 029875 10 TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV-CENIPIVLC 88 (186)
Q Consensus 10 Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~-~~~~p~ilv 88 (186)
|=|+...+-.+..-.+.+.+.|+|+||+-.|........+=+|++++++|+...-.-+. +.-+++. ......++|
T Consensus 55 ~rgitmkss~is~~~~~~~~nlidspghvdf~sevssas~l~d~alvlvdvvegv~~qt----~~vlrq~~~~~~~~~lv 130 (887)
T KOG0467|consen 55 TRGITMKSSAISLLHKDYLINLIDSPGHVDFSSEVSSASRLSDGALVLVDVVEGVCSQT----YAVLRQAWIEGLKPILV 130 (887)
T ss_pred hhceeeeccccccccCceEEEEecCCCccchhhhhhhhhhhcCCcEEEEeeccccchhH----HHHHHHHHHccCceEEE
Confidence 44555544444445577888999999999999999999999999999999987543322 1122221 135678899
Q ss_pred EeCCC
Q 029875 89 GNKVD 93 (186)
Q Consensus 89 ~nK~D 93 (186)
+||+|
T Consensus 131 inkid 135 (887)
T KOG0467|consen 131 INKID 135 (887)
T ss_pred Eehhh
Confidence 99999
No 341
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=96.61 E-value=0.0022 Score=54.04 Aligned_cols=71 Identities=17% Similarity=0.221 Sum_probs=49.8
Q ss_pred ccccccCcEEEEEEeCCChhhHH--hHHHHHHHHHhhcCCCCEEEEEeCCCCCCcccChHHHHHH---HHcCCcEEEecc
Q 029875 45 DGYYIHGQCAIIMFDVTARLTYK--NVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFH---RKKNLQYYEISA 119 (186)
Q Consensus 45 ~~~~~~ad~vilv~D~~~~~s~~--~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~---~~~~~~~~~~Sa 119 (186)
+..+..+|+||.++|+.++-=|. ++..|+..+. +++..+|+.||.||..... ...|+ ..++++++..||
T Consensus 169 WRVlErSDivvqIVDARnPllfr~~dLe~Yvke~d---~~K~~~LLvNKaDLl~~~q---r~aWa~YF~~~ni~~vf~SA 242 (562)
T KOG1424|consen 169 WRVLERSDIVVQIVDARNPLLFRSPDLEDYVKEVD---PSKANVLLVNKADLLPPEQ---RVAWAEYFRQNNIPVVFFSA 242 (562)
T ss_pred HHHHhhcceEEEEeecCCccccCChhHHHHHhccc---cccceEEEEehhhcCCHHH---HHHHHHHHHhcCceEEEEec
Confidence 34577899999999999986554 2344444433 4678899999999964322 22443 455699999999
Q ss_pred CC
Q 029875 120 KS 121 (186)
Q Consensus 120 ~~ 121 (186)
..
T Consensus 243 ~~ 244 (562)
T KOG1424|consen 243 LA 244 (562)
T ss_pred cc
Confidence 86
No 342
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=96.58 E-value=0.0039 Score=49.51 Aligned_cols=54 Identities=20% Similarity=0.178 Sum_probs=38.4
Q ss_pred CCCEEEEEeCCCCCCcc--cChHHHHHHHHc--CCcEEEeccCCCCCchHHHHHHHHH
Q 029875 82 NIPIVLCGNKVDVKNRQ--VKAKQVTFHRKK--NLQYYEISAKSNYNFEKPFLYLARK 135 (186)
Q Consensus 82 ~~p~ilv~nK~Dl~~~~--~~~~~~~~~~~~--~~~~~~~Sa~~~~gi~~l~~~l~~~ 135 (186)
..+-++|.||+|+.+.. ......+..+.. ..+++.+||++|.|+++++.+|..+
T Consensus 230 ~~ADIVVLNKiDLl~~~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~ 287 (290)
T PRK10463 230 AAASLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQ 287 (290)
T ss_pred hcCcEEEEEhHHcCcccHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 35678999999997521 111222323332 4689999999999999999999864
No 343
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=96.51 E-value=0.014 Score=46.36 Aligned_cols=103 Identities=12% Similarity=0.018 Sum_probs=63.7
Q ss_pred EEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCcccChHHHHH
Q 029875 27 IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTF 106 (186)
Q Consensus 27 ~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~ 106 (186)
+-+.|+.|.|--... -...+.||.+++|.=+.-.+..+-++. .+. ..-=++|+||.|..+.........+
T Consensus 144 ~DvIIVETVGvGQse---v~I~~~aDt~~~v~~pg~GD~~Q~iK~---Gim----EiaDi~vINKaD~~~A~~a~r~l~~ 213 (323)
T COG1703 144 YDVIIVETVGVGQSE---VDIANMADTFLVVMIPGAGDDLQGIKA---GIM----EIADIIVINKADRKGAEKAARELRS 213 (323)
T ss_pred CCEEEEEecCCCcch---hHHhhhcceEEEEecCCCCcHHHHHHh---hhh----hhhheeeEeccChhhHHHHHHHHHH
Confidence 445566775532211 123456899999987766655554432 222 2345788999997654322221111
Q ss_pred H----H------HcCCcEEEeccCCCCCchHHHHHHHHHHhCC
Q 029875 107 H----R------KKNLQYYEISAKSNYNFEKPFLYLARKLAGD 139 (186)
Q Consensus 107 ~----~------~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 139 (186)
+ . .+..+++.+||.+|+|++++++.+.++..-.
T Consensus 214 al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~~~ 256 (323)
T COG1703 214 ALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRKFL 256 (323)
T ss_pred HHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHHHH
Confidence 1 1 1124799999999999999999999888644
No 344
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=96.50 E-value=0.0026 Score=50.63 Aligned_cols=109 Identities=15% Similarity=0.156 Sum_probs=69.7
Q ss_pred EEEEEEeCCCccccCCccccccccCcEEEEEEeCCCh----hhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCcccChH
Q 029875 27 IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTAR----LTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK 102 (186)
Q Consensus 27 ~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~----~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~ 102 (186)
-.+.|.|+||++-.....-.-..-.|++++++..+.. ++-+.+.. -++.+ -..++++-||+||.....-.+
T Consensus 125 RHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaa--veiM~---LkhiiilQNKiDli~e~~A~e 199 (466)
T KOG0466|consen 125 RHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAA--VEIMK---LKHIIILQNKIDLIKESQALE 199 (466)
T ss_pred EEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHH--HHHhh---hceEEEEechhhhhhHHHHHH
Confidence 3567889999876443222222234788888877653 23332211 12222 367999999999975332222
Q ss_pred ----HHHHHHHc---CCcEEEeccCCCCCchHHHHHHHHHHhCCC
Q 029875 103 ----QVTFHRKK---NLQYYEISAKSNYNFEKPFLYLARKLAGDP 140 (186)
Q Consensus 103 ----~~~~~~~~---~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~ 140 (186)
..+|...- +.|++.+||.-..||+-+.+.+++.+....
T Consensus 200 q~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIPvPv 244 (466)
T KOG0466|consen 200 QHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIPVPV 244 (466)
T ss_pred HHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCCCCc
Confidence 22344322 468999999999999999999999987543
No 345
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.41 E-value=0.029 Score=43.42 Aligned_cols=111 Identities=19% Similarity=0.228 Sum_probs=68.5
Q ss_pred eEEEEEEEeCCCccccCC---ccccccccCcEEEEEEeCCChhhHHhHHHHHHHHH---hhcCCCCEEEEEeCCCCCCcc
Q 029875 25 GKIRFYCWDTAGQEKFGG---LRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLC---RVCENIPIVLCGNKVDVKNRQ 98 (186)
Q Consensus 25 ~~~~l~l~Dt~G~~~~~~---~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~---~~~~~~p~ilv~nK~Dl~~~~ 98 (186)
.-+.+++||.|||-.+-. -..+.++++-+.|+|+|+.+.. .+.+.+....+. +..+++-+=+.+.|.|-....
T Consensus 73 sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gALifvIDaQddy-~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd 151 (347)
T KOG3887|consen 73 SFINFQVWDFPGQMDFFDPSFDYEMIFRGVGALIFVIDAQDDY-MEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDD 151 (347)
T ss_pred hhcceEEeecCCccccCCCccCHHHHHhccCeEEEEEechHHH-HHHHHHHHHHhhheeecCCCceEEEEEEeccCCchh
Confidence 458899999999976532 2356688999999999998742 222333333332 233778888999999965322
Q ss_pred --cChH------HHHHHHHcC-----CcEEEeccCCCCCchHHHHHHHHHHh
Q 029875 99 --VKAK------QVTFHRKKN-----LQYYEISAKSNYNFEKPFLYLARKLA 137 (186)
Q Consensus 99 --~~~~------~~~~~~~~~-----~~~~~~Sa~~~~gi~~l~~~l~~~i~ 137 (186)
+... ...-....+ +.++.+|.. ...|-|+|..+++++.
T Consensus 152 ~kietqrdI~qr~~d~l~d~gle~v~vsf~LTSIy-DHSIfEAFSkvVQkLi 202 (347)
T KOG3887|consen 152 FKIETQRDIHQRTNDELADAGLEKVQVSFYLTSIY-DHSIFEAFSKVVQKLI 202 (347)
T ss_pred hhhhhHHHHHHHhhHHHHhhhhccceEEEEEeeec-chHHHHHHHHHHHHHh
Confidence 1111 111111222 345666655 4578888888887775
No 346
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=96.39 E-value=0.004 Score=48.47 Aligned_cols=84 Identities=8% Similarity=0.048 Sum_probs=51.5
Q ss_pred cccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCcccChHHH----HHHHH----cCCcEEEecc
Q 029875 48 YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQV----TFHRK----KNLQYYEISA 119 (186)
Q Consensus 48 ~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~----~~~~~----~~~~~~~~Sa 119 (186)
..-||.+++|.-+.-.+..+.++. .+.+ ..=++|+||+|++......... .+... +..+++.+||
T Consensus 140 ~~~aD~~v~v~~Pg~GD~iQ~~Ka---GimE----iaDi~vVNKaD~~gA~~~~~~l~~~l~l~~~~~~~W~ppV~~tsA 212 (266)
T PF03308_consen 140 ADMADTVVLVLVPGLGDEIQAIKA---GIME----IADIFVVNKADRPGADRTVRDLRSMLHLLREREDGWRPPVLKTSA 212 (266)
T ss_dssp HTTSSEEEEEEESSTCCCCCTB-T---THHH----H-SEEEEE--SHHHHHHHHHHHHHHHHHCSTSCTSB--EEEEEBT
T ss_pred HHhcCeEEEEecCCCccHHHHHhh---hhhh----hccEEEEeCCChHHHHHHHHHHHHHHhhccccccCCCCCEEEEEe
Confidence 456999999998877666554432 2222 3457888999965432211111 11111 1247999999
Q ss_pred CCCCCchHHHHHHHHHHhC
Q 029875 120 KSNYNFEKPFLYLARKLAG 138 (186)
Q Consensus 120 ~~~~gi~~l~~~l~~~i~~ 138 (186)
.+|.||+++++.+.++...
T Consensus 213 ~~~~Gi~eL~~~i~~~~~~ 231 (266)
T PF03308_consen 213 LEGEGIDELWEAIDEHRDY 231 (266)
T ss_dssp TTTBSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 9999999999999876643
No 347
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=96.33 E-value=0.015 Score=46.67 Aligned_cols=69 Identities=9% Similarity=0.001 Sum_probs=41.2
Q ss_pred EEEEEEEeCCCccccCCcc-------cccc--ccCcEEEEEEeCCChhhHHhH-HHHHHHHHhhcC---CCCEEEEEeCC
Q 029875 26 KIRFYCWDTAGQEKFGGLR-------DGYY--IHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCE---NIPIVLCGNKV 92 (186)
Q Consensus 26 ~~~l~l~Dt~G~~~~~~~~-------~~~~--~~ad~vilv~D~~~~~s~~~i-~~~~~~~~~~~~---~~p~ilv~nK~ 92 (186)
...+.+|||||........ +.++ .+.|++|+|..++.. .+... ...++.+...+. -.+.+|+.|++
T Consensus 85 G~~l~VIDTPGL~d~~~~~e~~~~~ik~~l~~~g~DvVLyV~rLD~~-R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~ 163 (313)
T TIGR00991 85 GFTLNIIDTPGLIEGGYINDQAVNIIKRFLLGKTIDVLLYVDRLDAY-RVDTLDGQVIRAITDSFGKDIWRKSLVVLTHA 163 (313)
T ss_pred CeEEEEEECCCCCchHHHHHHHHHHHHHHhhcCCCCEEEEEeccCcc-cCCHHHHHHHHHHHHHhhhhhhccEEEEEECC
Confidence 4578899999976542221 1111 268999999655422 12111 234444544432 36799999999
Q ss_pred CCC
Q 029875 93 DVK 95 (186)
Q Consensus 93 Dl~ 95 (186)
|..
T Consensus 164 d~~ 166 (313)
T TIGR00991 164 QFS 166 (313)
T ss_pred ccC
Confidence 975
No 348
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=96.23 E-value=0.036 Score=42.60 Aligned_cols=64 Identities=23% Similarity=0.227 Sum_probs=44.1
Q ss_pred EEEEEEeC-CCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCC
Q 029875 27 IRFYCWDT-AGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK 95 (186)
Q Consensus 27 ~~l~l~Dt-~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~ 95 (186)
..+.+.|| +|.+.|. +...+++|.+|.|+|++.+ |+....+..+...+. .=.++.+|.||.|-.
T Consensus 134 ~e~VivDtEAGiEHfg---Rg~~~~vD~vivVvDpS~~-sl~taeri~~L~~el-g~k~i~~V~NKv~e~ 198 (255)
T COG3640 134 YEVVIVDTEAGIEHFG---RGTIEGVDLVIVVVDPSYK-SLRTAERIKELAEEL-GIKRIFVVLNKVDEE 198 (255)
T ss_pred CcEEEEecccchhhhc---cccccCCCEEEEEeCCcHH-HHHHHHHHHHHHHHh-CCceEEEEEeeccch
Confidence 45667799 8887765 4567899999999999965 444433333222222 127899999999853
No 349
>PTZ00258 GTP-binding protein; Provisional
Probab=96.23 E-value=0.035 Score=46.03 Aligned_cols=41 Identities=20% Similarity=0.099 Sum_probs=26.5
Q ss_pred CCCEEEEEeCC--CCC-C-cccChHHHHHHHHc-CCcEEEeccCCC
Q 029875 82 NIPIVLCGNKV--DVK-N-RQVKAKQVTFHRKK-NLQYYEISAKSN 122 (186)
Q Consensus 82 ~~p~ilv~nK~--Dl~-~-~~~~~~~~~~~~~~-~~~~~~~Sa~~~ 122 (186)
.+|+++|+|+. |+. . ........+++... +.+++.+||+..
T Consensus 220 ~KP~iyv~N~~E~D~~~~~~~~~~~l~~~~~~~~~~~~v~~sa~~E 265 (390)
T PTZ00258 220 AKPMIYLVNMSEKDFIRQKNKWLAKIKEWVGEKGGGPIIPYSAEFE 265 (390)
T ss_pred cCCEEEEEECchhhhcccchHHHHHHHHHHHhcCCCeEEEeeHHHH
Confidence 47999999999 762 2 11122234555565 478999998544
No 350
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=96.02 E-value=0.035 Score=42.03 Aligned_cols=126 Identities=9% Similarity=-0.033 Sum_probs=69.8
Q ss_pred cceEEEEEEEEEECCeEEEEEEEeCCCccccCCc--------c---ccccccCcEEEEEEeCCChhhHHhHHHHHHHHHh
Q 029875 10 TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL--------R---DGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR 78 (186)
Q Consensus 10 Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~--------~---~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~ 78 (186)
|..+.... ..++|.. +.++||||....... . .....+.+++|||+..+.. +-.+ ...++.+..
T Consensus 36 t~~~~~~~--~~~~g~~--v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~~~g~ha~llVi~~~r~-t~~~-~~~l~~l~~ 109 (212)
T PF04548_consen 36 TQECQKYS--GEVDGRQ--VTVIDTPGLFDSDGSDEEIIREIKRCLSLCSPGPHAFLLVIPLGRF-TEED-REVLELLQE 109 (212)
T ss_dssp -SS-EEEE--EEETTEE--EEEEE--SSEETTEEHHHHHHHHHHHHHHTTT-ESEEEEEEETTB--SHHH-HHHHHHHHH
T ss_pred ccccceee--eeecceE--EEEEeCCCCCCCcccHHHHHHHHHHHHHhccCCCeEEEEEEecCcc-hHHH-HHHHHHHHH
Confidence 44444443 3556654 567799995432211 1 1234578999999999833 3222 233334444
Q ss_pred hcC---CCCEEEEEeCCCCCCcccCh--------H-HHHHHHHcCCcEEEeccC------CCCCchHHHHHHHHHHhCCC
Q 029875 79 VCE---NIPIVLCGNKVDVKNRQVKA--------K-QVTFHRKKNLQYYEISAK------SNYNFEKPFLYLARKLAGDP 140 (186)
Q Consensus 79 ~~~---~~p~ilv~nK~Dl~~~~~~~--------~-~~~~~~~~~~~~~~~Sa~------~~~gi~~l~~~l~~~i~~~~ 140 (186)
.+. -..++||.|..|........ . ...+.+..+-.|..++.+ ....+.+||..+-+.+.++.
T Consensus 110 ~FG~~~~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c~~R~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n~ 189 (212)
T PF04548_consen 110 IFGEEIWKHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKCGGRYHVFNNKTKDKEKDESQVSELLEKIEEMVQENG 189 (212)
T ss_dssp HHCGGGGGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHTTTCEEECCTTHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HccHHHHhHhhHHhhhccccccccHHHHHhccCchhHhHHhhhcCCEEEEEeccccchhhhHHHHHHHHHHHHHHHHHcC
Confidence 332 24688888988865432211 1 224556667778888777 33468888888888887665
Q ss_pred C
Q 029875 141 N 141 (186)
Q Consensus 141 ~ 141 (186)
.
T Consensus 190 g 190 (212)
T PF04548_consen 190 G 190 (212)
T ss_dssp T
T ss_pred C
Confidence 3
No 351
>KOG2484 consensus GTPase [General function prediction only]
Probab=95.99 E-value=0.006 Score=50.04 Aligned_cols=62 Identities=18% Similarity=0.209 Sum_probs=41.9
Q ss_pred cCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCcccChH
Q 029875 40 FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK 102 (186)
Q Consensus 40 ~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~ 102 (186)
|..-.+..+.-+|+||-|.|+.|+.+=.. ...-+.+.+...+..+|+|.||+||..+..-++
T Consensus 136 Y~ke~rkvve~sDVVleVlDARDPlgtR~-~~vE~~V~~~~gnKkLILVLNK~DLVPrEv~e~ 197 (435)
T KOG2484|consen 136 YDKEFRKVVEASDVVLEVLDARDPLGTRC-PEVEEAVLQAHGNKKLILVLNKIDLVPREVVEK 197 (435)
T ss_pred HHHHHHHHHhhhheEEEeeeccCCCCCCC-hhHHHHHHhccCCceEEEEeehhccCCHHHHHH
Confidence 33344555677999999999999875331 222333444445789999999999976554333
No 352
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.73 E-value=0.0089 Score=48.82 Aligned_cols=69 Identities=20% Similarity=0.121 Sum_probs=45.5
Q ss_pred EEEEEeCCCccc-----------cCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCC
Q 029875 28 RFYCWDTAGQEK-----------FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN 96 (186)
Q Consensus 28 ~l~l~Dt~G~~~-----------~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 96 (186)
.+.|+||||.-. |.....=|+..+|.++++||+...+--++....+..++.. .-.+-||.||.|..+
T Consensus 148 ~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~--EdkiRVVLNKADqVd 225 (532)
T KOG1954|consen 148 SVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGH--EDKIRVVLNKADQVD 225 (532)
T ss_pred heeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhCC--cceeEEEeccccccC
Confidence 567889999432 1223344567899999999998765333444555555543 456778899999865
Q ss_pred cc
Q 029875 97 RQ 98 (186)
Q Consensus 97 ~~ 98 (186)
.+
T Consensus 226 tq 227 (532)
T KOG1954|consen 226 TQ 227 (532)
T ss_pred HH
Confidence 43
No 353
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=95.62 E-value=0.056 Score=42.12 Aligned_cols=69 Identities=9% Similarity=0.008 Sum_probs=40.2
Q ss_pred EEEEEEeCCCccccCC---c-------cccccc--cCcEEEEEEeCCCh-hhHHhHHHHHHHHHhhcC---CCCEEEEEe
Q 029875 27 IRFYCWDTAGQEKFGG---L-------RDGYYI--HGQCAIIMFDVTAR-LTYKNVPTWHRDLCRVCE---NIPIVLCGN 90 (186)
Q Consensus 27 ~~l~l~Dt~G~~~~~~---~-------~~~~~~--~ad~vilv~D~~~~-~s~~~i~~~~~~~~~~~~---~~p~ilv~n 90 (186)
..+.+|||||...... . ...+++ ..+++++|..++.. .++.+ ...++.+...+. -.++++|.|
T Consensus 79 ~~i~vIDTPGl~~~~~~~~~~~~~~~~I~~~l~~~~idvIL~V~rlD~~r~~~~d-~~llk~I~e~fG~~i~~~~ivV~T 157 (249)
T cd01853 79 FKLNIIDTPGLLESVMDQRVNRKILSSIKRYLKKKTPDVVLYVDRLDMYRRDYLD-LPLLRAITDSFGPSIWRNAIVVLT 157 (249)
T ss_pred eEEEEEECCCcCcchhhHHHHHHHHHHHHHHHhccCCCEEEEEEcCCCCCCCHHH-HHHHHHHHHHhChhhHhCEEEEEe
Confidence 5678999999765421 0 122332 57888888766532 12221 234444444332 257999999
Q ss_pred CCCCCC
Q 029875 91 KVDVKN 96 (186)
Q Consensus 91 K~Dl~~ 96 (186)
|+|...
T Consensus 158 ~~d~~~ 163 (249)
T cd01853 158 HAASSP 163 (249)
T ss_pred CCccCC
Confidence 999863
No 354
>PHA02518 ParA-like protein; Provisional
Probab=95.41 E-value=0.052 Score=40.57 Aligned_cols=68 Identities=10% Similarity=0.011 Sum_probs=43.9
Q ss_pred eEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChh--hHHhHHHHHHHHHhhcCCCCE-EEEEeCCCC
Q 029875 25 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARL--TYKNVPTWHRDLCRVCENIPI-VLCGNKVDV 94 (186)
Q Consensus 25 ~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~--s~~~i~~~~~~~~~~~~~~p~-ilv~nK~Dl 94 (186)
..+.+.|+||||. ...+....+..||.+|++...+... +...+..++..+.......|. .++.|+.+.
T Consensus 75 ~~~d~viiD~p~~--~~~~~~~~l~~aD~viip~~ps~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~n~~~~ 145 (211)
T PHA02518 75 SGYDYVVVDGAPQ--DSELARAALRIADMVLIPVQPSPFDIWAAPDLVELIKARQEVTDGLPKFAFIISRAIK 145 (211)
T ss_pred ccCCEEEEeCCCC--ccHHHHHHHHHCCEEEEEeCCChhhHHHHHHHHHHHHHHHhhCCCCceEEEEEeccCC
Confidence 3467889999986 3455677888999999999888542 333344445444333334544 466777653
No 355
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.10 E-value=0.11 Score=41.01 Aligned_cols=96 Identities=11% Similarity=-0.038 Sum_probs=57.7
Q ss_pred eEEEEEEEeCCCccccCCccc------------cccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCC
Q 029875 25 GKIRFYCWDTAGQEKFGGLRD------------GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKV 92 (186)
Q Consensus 25 ~~~~l~l~Dt~G~~~~~~~~~------------~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~ 92 (186)
..+.+.|+||+|........- ..-..++.+++|+|++-.. +.+. +...+.+.. .+.-+|.||.
T Consensus 153 ~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~--~~~~-~~~~f~~~~--~~~g~IlTKl 227 (272)
T TIGR00064 153 RNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQ--NALE-QAKVFNEAV--GLTGIILTKL 227 (272)
T ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCH--HHHH-HHHHHHhhC--CCCEEEEEcc
Confidence 346778889999754322110 1112489999999997532 2222 223333221 2456889999
Q ss_pred CCCCcccChHHHHHHHHcCCcEEEeccCCCCCchHHH
Q 029875 93 DVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPF 129 (186)
Q Consensus 93 Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 129 (186)
|...+ .-....+....+.|+..++ +|.+++++-
T Consensus 228 De~~~--~G~~l~~~~~~~~Pi~~~~--~Gq~~~dl~ 260 (272)
T TIGR00064 228 DGTAK--GGIILSIAYELKLPIKFIG--VGEKIDDLA 260 (272)
T ss_pred CCCCC--ccHHHHHHHHHCcCEEEEe--CCCChHhCc
Confidence 97433 2234455667788988888 788776654
No 356
>KOG4273 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.09 E-value=0.2 Score=39.06 Aligned_cols=88 Identities=16% Similarity=0.233 Sum_probs=62.4
Q ss_pred ccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCc-------------------------------
Q 029875 49 IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR------------------------------- 97 (186)
Q Consensus 49 ~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~------------------------------- 97 (186)
....++++|||.+....+..+..|+..-.-. .=-.++++|||.|....
T Consensus 77 ~pl~a~vmvfdlse~s~l~alqdwl~htdin-sfdillcignkvdrvphhlahdeyrrrl~kasdpsrdl~~di~dfgis 155 (418)
T KOG4273|consen 77 EPLQAFVMVFDLSEKSGLDALQDWLPHTDIN-SFDILLCIGNKVDRVPHHLAHDEYRRRLAKASDPSRDLMIDICDFGIS 155 (418)
T ss_pred cceeeEEEEEeccchhhhHHHHhhccccccc-cchhheecccccccccchhhhhHHHHHHHhhcCcchhHhhhhhhcccc
Confidence 3467899999999999999999998643221 11246788999985320
Q ss_pred ---------------ccChHHHHHHHHcCCcEEEeccCCC------------CCchHHHHHHHHHHh
Q 029875 98 ---------------QVKAKQVTFHRKKNLQYYEISAKSN------------YNFEKPFLYLARKLA 137 (186)
Q Consensus 98 ---------------~~~~~~~~~~~~~~~~~~~~Sa~~~------------~gi~~l~~~l~~~i~ 137 (186)
.+....++|+.++++.+++.||.+. .|++.+|.+|..++.
T Consensus 156 etegssllgsedasldirga~lewc~e~~~efieacasn~dfd~c~~~dgdsqgverifgal~ahmw 222 (418)
T KOG4273|consen 156 ETEGSSLLGSEDASLDIRGAALEWCLEHGFEFIEACASNEDFDECDDDDGDSQGVERIFGALNAHMW 222 (418)
T ss_pred ccccccccccccchhhHHHHHHHHHHhcCceeeeecCCccccchhhccCcchhhHHHHHHHhhhccC
Confidence 0111235899999999999998543 478888888876664
No 357
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=95.00 E-value=0.079 Score=37.28 Aligned_cols=65 Identities=8% Similarity=0.140 Sum_probs=45.9
Q ss_pred EEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCC
Q 029875 27 IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDV 94 (186)
Q Consensus 27 ~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl 94 (186)
+.+.++|+++. ........+..+|.++++.+.+.. ++......++.+.+.....++.+|.|+++-
T Consensus 45 yd~VIiD~p~~--~~~~~~~~l~~aD~vviv~~~~~~-s~~~~~~~l~~l~~~~~~~~~~lVvN~~~~ 109 (139)
T cd02038 45 YDYIIIDTGAG--ISDNVLDFFLAADEVIVVTTPEPT-SITDAYALIKKLAKQLRVLNFRVVVNRAES 109 (139)
T ss_pred CCEEEEECCCC--CCHHHHHHHHhCCeEEEEcCCChh-HHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 66788999874 333445678999999999999754 555545555555444345678899999974
No 358
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=94.92 E-value=0.15 Score=41.21 Aligned_cols=96 Identities=11% Similarity=0.031 Sum_probs=57.8
Q ss_pred eEEEEEEEeCCCccccCC-----ccc------c-ccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCC
Q 029875 25 GKIRFYCWDTAGQEKFGG-----LRD------G-YYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKV 92 (186)
Q Consensus 25 ~~~~l~l~Dt~G~~~~~~-----~~~------~-~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~ 92 (186)
..+.+.|+||||...... +.. . .-...+.+++|.|++-.. ..+.. .....+. -.+.-+|.||.
T Consensus 195 ~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~--~~~~~-a~~f~~~--~~~~giIlTKl 269 (318)
T PRK10416 195 RGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQ--NALSQ-AKAFHEA--VGLTGIILTKL 269 (318)
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCh--HHHHH-HHHHHhh--CCCCEEEEECC
Confidence 346788889999754221 111 1 112467899999998542 22222 1222211 13456889999
Q ss_pred CCCCcccChHHHHHHHHcCCcEEEeccCCCCCchHHH
Q 029875 93 DVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPF 129 (186)
Q Consensus 93 Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 129 (186)
|...+ .-....++...+.|+..++ +|++++++-
T Consensus 270 D~t~~--~G~~l~~~~~~~~Pi~~v~--~Gq~~~Dl~ 302 (318)
T PRK10416 270 DGTAK--GGVVFAIADELGIPIKFIG--VGEGIDDLQ 302 (318)
T ss_pred CCCCC--ccHHHHHHHHHCCCEEEEe--CCCChhhCc
Confidence 95422 2334566777799999888 788887664
No 359
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=94.86 E-value=0.12 Score=42.86 Aligned_cols=88 Identities=15% Similarity=0.132 Sum_probs=52.9
Q ss_pred cccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCcccChH-HHHHHHHcCCcEEEeccCCCCCch
Q 029875 48 YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK-QVTFHRKKNLQYYEISAKSNYNFE 126 (186)
Q Consensus 48 ~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~Sa~~~~gi~ 126 (186)
+..+|++|-|.|+.++-.=. ....-+.+++..+...+|+|.|||||...-+... ...+.+++..--|..|..+..|=-
T Consensus 211 iDSSDVvvqVlDARDPmGTr-c~~ve~ylkke~phKHli~vLNKvDLVPtwvt~~Wv~~lSkeyPTiAfHAsi~nsfGKg 289 (572)
T KOG2423|consen 211 IDSSDVVVQVLDARDPMGTR-CKHVEEYLKKEKPHKHLIYVLNKVDLVPTWVTAKWVRHLSKEYPTIAFHASINNSFGKG 289 (572)
T ss_pred hcccceeEEeeeccCCcccc-cHHHHHHHhhcCCcceeEEEeeccccccHHHHHHHHHHHhhhCcceeeehhhcCccchh
Confidence 34789999999999985311 1233334445567899999999999975433333 234444444445666655656633
Q ss_pred HHHHHHHHHHh
Q 029875 127 KPFLYLARKLA 137 (186)
Q Consensus 127 ~l~~~l~~~i~ 137 (186)
.++ .|++++.
T Consensus 290 alI-~llRQf~ 299 (572)
T KOG2423|consen 290 ALI-QLLRQFA 299 (572)
T ss_pred HHH-HHHHHHH
Confidence 333 3334443
No 360
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=94.77 E-value=0.52 Score=36.91 Aligned_cols=49 Identities=16% Similarity=0.148 Sum_probs=32.0
Q ss_pred CEEEEEeCCCCCCcccChHHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHh
Q 029875 84 PIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLA 137 (186)
Q Consensus 84 p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 137 (186)
+++.|-||+|.. ..++.-++++.- ..+.+|+...-|++.+++.+-..+.
T Consensus 240 ~ClYvYnKID~v---s~eevdrlAr~P--nsvViSC~m~lnld~lle~iWe~l~ 288 (364)
T KOG1486|consen 240 KCLYVYNKIDQV---SIEEVDRLARQP--NSVVISCNMKLNLDRLLERIWEELN 288 (364)
T ss_pred EEEEEeecccee---cHHHHHHHhcCC--CcEEEEeccccCHHHHHHHHHHHhc
Confidence 677777777742 112222444432 3667888888999999988887774
No 361
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=94.77 E-value=0.084 Score=42.59 Aligned_cols=84 Identities=18% Similarity=0.181 Sum_probs=57.8
Q ss_pred cccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc-CCCC----EEEEEeCCCCCCcccChHHHHHHHHcCCcEEEeccCCC
Q 029875 48 YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIP----IVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSN 122 (186)
Q Consensus 48 ~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-~~~p----~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 122 (186)
...||+++-|.|++.+..-+.....+.-+.+.- +..| ++=|-||+|..+.....+ .++ .+.+||++|
T Consensus 255 VaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~e~E------~n~--~v~isaltg 326 (410)
T KOG0410|consen 255 VAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEVEEE------KNL--DVGISALTG 326 (410)
T ss_pred HhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccccCccc------cCC--ccccccccC
Confidence 457999999999999976555444444444432 2233 556778888765443222 222 788999999
Q ss_pred CCchHHHHHHHHHHhCC
Q 029875 123 YNFEKPFLYLARKLAGD 139 (186)
Q Consensus 123 ~gi~~l~~~l~~~i~~~ 139 (186)
.|.+++...+-..+...
T Consensus 327 dgl~el~~a~~~kv~~~ 343 (410)
T KOG0410|consen 327 DGLEELLKAEETKVASE 343 (410)
T ss_pred ccHHHHHHHHHHHhhhh
Confidence 99999999988877543
No 362
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=94.71 E-value=0.34 Score=38.46 Aligned_cols=108 Identities=11% Similarity=0.078 Sum_probs=55.9
Q ss_pred ccceEEEEEEEEEECCeEEEEEEEeCCCccccC-------------------------Cccc--cccccCcEEEEEEeCC
Q 029875 9 ATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFG-------------------------GLRD--GYYIHGQCAIIMFDVT 61 (186)
Q Consensus 9 ~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~-------------------------~~~~--~~~~~ad~vilv~D~~ 61 (186)
+|..+......+.-++..+.|.++||||-.... ...+ ..=...|+||++++++
T Consensus 45 ~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt 124 (281)
T PF00735_consen 45 RTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCWEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPT 124 (281)
T ss_dssp SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHHHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TT
T ss_pred cccceeeEEEEeccCCcceEEEEEeCCCccccccchhhhHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCC
Confidence 455555555555558889999999999932110 0011 1113589999999987
Q ss_pred Chh-hHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCcccC----hHHHHHHHHcCCcEEEeccC
Q 029875 62 ARL-TYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK----AKQVTFHRKKNLQYYEISAK 120 (186)
Q Consensus 62 ~~~-s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~----~~~~~~~~~~~~~~~~~Sa~ 120 (186)
... +-.+ ++.+++....+++|-|+.|.|....... .....-...++++++....-
T Consensus 125 ~~~L~~~D----i~~mk~Ls~~vNvIPvIaKaD~lt~~el~~~k~~i~~~l~~~~I~~f~f~~~ 184 (281)
T PF00735_consen 125 GHGLKPLD----IEFMKRLSKRVNVIPVIAKADTLTPEELQAFKQRIREDLEENNIKIFDFPED 184 (281)
T ss_dssp SSSS-HHH----HHHHHHHTTTSEEEEEESTGGGS-HHHHHHHHHHHHHHHHHTT--S------
T ss_pred CccchHHH----HHHHHHhcccccEEeEEecccccCHHHHHHHHHHHHHHHHHcCceeeccccc
Confidence 532 2112 3345555557889999999998642211 11224445667776654443
No 363
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=94.57 E-value=0.058 Score=45.94 Aligned_cols=70 Identities=16% Similarity=0.183 Sum_probs=51.6
Q ss_pred CCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCC
Q 029875 23 NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK 95 (186)
Q Consensus 23 ~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~ 95 (186)
++..+.+.|+|.||+-.|.+-....++-.||.+.|+|.-+.-..+.-.-..+.+.+ .+.-+++.||.|..
T Consensus 94 d~~~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~E---RIkPvlv~NK~DRA 163 (842)
T KOG0469|consen 94 DGNGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAE---RIKPVLVMNKMDRA 163 (842)
T ss_pred CCcceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHHHHHHHHh---hccceEEeehhhHH
Confidence 45678899999999999999999999999999999999876554432122222222 34456678999964
No 364
>PF11111 CENP-M: Centromere protein M (CENP-M); InterPro: IPR020987 The prime candidate for specifying centromere identity is the array of nucleosomes assembles associated with CENP-A []. CENP-A recruits a nucleosome associated complex (CENP-A-NAC complex) comprised of CENP-M which this entry represents, along with two other proteins []. Assembly of the CENP-A NAC at centromeres is partly dependent on CENP-M. The CENP-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival [].
Probab=94.30 E-value=0.48 Score=34.75 Aligned_cols=90 Identities=9% Similarity=-0.040 Sum_probs=64.8
Q ss_pred cCcEEEEEEeCCChhhHHhHHHHHHHHHhh-cCCCCEEEEEeCCCCCCcccC-hHHHHHHHHcCCcEEEeccCCCCCchH
Q 029875 50 HGQCAIIMFDVTARLTYKNVPTWHRDLCRV-CENIPIVLCGNKVDVKNRQVK-AKQVTFHRKKNLQYYEISAKSNYNFEK 127 (186)
Q Consensus 50 ~ad~vilv~D~~~~~s~~~i~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 127 (186)
..|.|+|++|.+.+.|++.+..=+..+.-. .-++-++++-|-.......+. .+..+++..++++++.+.-.+..+...
T Consensus 64 rIDlIVFvinl~sk~SL~~ve~SL~~vd~~fflGKVCfl~t~a~~~~~~sv~~~~V~kla~~y~~plL~~~le~~~~~~~ 143 (176)
T PF11111_consen 64 RIDLIVFVINLHSKYSLQSVEASLSHVDPSFFLGKVCFLATNAGRESHCSVHPNEVRKLAATYNSPLLFADLENEEGRTS 143 (176)
T ss_pred eeEEEEEEEecCCcccHHHHHHHHhhCChhhhccceEEEEcCCCcccccccCHHHHHHHHHHhCCCEEEeecccchHHHH
Confidence 479999999999999988876655444332 235556666555554433333 446699999999999999998888887
Q ss_pred HHHHHHHHHhCC
Q 029875 128 PFLYLARKLAGD 139 (186)
Q Consensus 128 l~~~l~~~i~~~ 139 (186)
+-+.|++.+...
T Consensus 144 lAqRLL~~lqi~ 155 (176)
T PF11111_consen 144 LAQRLLRMLQIC 155 (176)
T ss_pred HHHHHHHHHHHH
Confidence 777777766543
No 365
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=94.13 E-value=0.53 Score=33.98 Aligned_cols=84 Identities=6% Similarity=-0.100 Sum_probs=51.4
Q ss_pred EEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCcccChHHHHHH
Q 029875 28 RFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFH 107 (186)
Q Consensus 28 ~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~ 107 (186)
.+.++||++.... .....+..||.+|++++.+.. ++..+..+++.+.+. ....+.++.|+++............+.
T Consensus 64 d~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~~~-s~~~~~~~~~~~~~~-~~~~~~iv~N~~~~~~~~~~~~~~~~~ 139 (179)
T cd02036 64 DYILIDSPAGIER--GFITAIAPADEALLVTTPEIS-SLRDADRVKGLLEAL-GIKVVGVIVNRVRPDMVEGGDMVEDIE 139 (179)
T ss_pred CEEEEECCCCCcH--HHHHHHHhCCcEEEEeCCCcc-hHHHHHHHHHHHHHc-CCceEEEEEeCCcccccchhhHHHHHH
Confidence 5778899875432 344557889999999988764 555555666555542 223467899999864322111123444
Q ss_pred HHcCCcEE
Q 029875 108 RKKNLQYY 115 (186)
Q Consensus 108 ~~~~~~~~ 115 (186)
+.++.+++
T Consensus 140 ~~~~~~v~ 147 (179)
T cd02036 140 EILGVPLL 147 (179)
T ss_pred HHhCCCEE
Confidence 45566654
No 366
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=94.13 E-value=0.28 Score=40.42 Aligned_cols=38 Identities=18% Similarity=0.174 Sum_probs=25.6
Q ss_pred CCEEEEEeCCCCC--C-cccChHHHHHHHHcCCcEEEeccC
Q 029875 83 IPIVLCGNKVDVK--N-RQVKAKQVTFHRKKNLQYYEISAK 120 (186)
Q Consensus 83 ~p~ilv~nK~Dl~--~-~~~~~~~~~~~~~~~~~~~~~Sa~ 120 (186)
+|+++++|+.|.. . .....+..+++.+.+.+++.+||+
T Consensus 200 KP~i~v~N~~e~~~~~~~~~~~~i~~~~~~~~~~~i~~sa~ 240 (364)
T PRK09601 200 KPVLYVANVDEDDLADGNPYVKKVREIAAKEGAEVVVICAK 240 (364)
T ss_pred CCeEEEEECCccccccccHHHHHHHHHHHHcCCeEEEEEHH
Confidence 6999999999852 1 111123345666778889999874
No 367
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=94.02 E-value=0.56 Score=36.94 Aligned_cols=80 Identities=11% Similarity=0.098 Sum_probs=56.4
Q ss_pred EEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCcccChHHHHH
Q 029875 27 IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTF 106 (186)
Q Consensus 27 ~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~ 106 (186)
..+.|+|+|-.- .--.-..+.+||.+|+|--+|-. ++-+++..++.+.+. +.|..+|.||.++.. . +..++
T Consensus 164 ~~~~IIDsaaG~--gCpVi~sl~~aD~ai~VTEPTp~-glhD~kr~~el~~~f--~ip~~iViNr~~~g~---s-~ie~~ 234 (284)
T COG1149 164 ADLLIIDSAAGT--GCPVIASLKGADLAILVTEPTPF-GLHDLKRALELVEHF--GIPTGIVINRYNLGD---S-EIEEY 234 (284)
T ss_pred cceeEEecCCCC--CChHHHhhccCCEEEEEecCCcc-chhHHHHHHHHHHHh--CCceEEEEecCCCCc---h-HHHHH
Confidence 356677874321 11223457899999999988853 566677777777665 899999999995432 2 66788
Q ss_pred HHHcCCcEE
Q 029875 107 HRKKNLQYY 115 (186)
Q Consensus 107 ~~~~~~~~~ 115 (186)
+.+.+++++
T Consensus 235 ~~e~gi~il 243 (284)
T COG1149 235 CEEEGIPIL 243 (284)
T ss_pred HHHcCCCee
Confidence 999988765
No 368
>PRK14974 cell division protein FtsY; Provisional
Probab=93.24 E-value=0.42 Score=38.99 Aligned_cols=95 Identities=14% Similarity=0.026 Sum_probs=56.1
Q ss_pred EEEEEEeCCCccccCC-cc---ccc--cccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCcccC
Q 029875 27 IRFYCWDTAGQEKFGG-LR---DGY--YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK 100 (186)
Q Consensus 27 ~~l~l~Dt~G~~~~~~-~~---~~~--~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~ 100 (186)
+.+.|+||+|.-.... +. +.. ....+.+++|.|++...... .....+... -..--+|.||.|...+.
T Consensus 223 ~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~---~~a~~f~~~--~~~~giIlTKlD~~~~~-- 295 (336)
T PRK14974 223 IDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAV---EQAREFNEA--VGIDGVILTKVDADAKG-- 295 (336)
T ss_pred CCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHH---HHHHHHHhc--CCCCEEEEeeecCCCCc--
Confidence 4577889999754321 11 111 12578899999997643211 112222221 12355778999974322
Q ss_pred hHHHHHHHHcCCcEEEeccCCCCCchHHHH
Q 029875 101 AKQVTFHRKKNLQYYEISAKSNYNFEKPFL 130 (186)
Q Consensus 101 ~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 130 (186)
-....++...+.|+..++ +|.+++++..
T Consensus 296 G~~ls~~~~~~~Pi~~i~--~Gq~v~Dl~~ 323 (336)
T PRK14974 296 GAALSIAYVIGKPILFLG--VGQGYDDLIP 323 (336)
T ss_pred cHHHHHHHHHCcCEEEEe--CCCChhhccc
Confidence 234455666788988887 7898877654
No 369
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.23 E-value=1.8 Score=35.59 Aligned_cols=125 Identities=13% Similarity=0.164 Sum_probs=76.4
Q ss_pred cccceEEEEEEEEEECCeEEEEEEEeCCCcccc-------------------------CCccccccc--cCcEEEEEEeC
Q 029875 8 KATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF-------------------------GGLRDGYYI--HGQCAIIMFDV 60 (186)
Q Consensus 8 ~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~-------------------------~~~~~~~~~--~ad~vilv~D~ 60 (186)
..|+.+......+.-+|..++|++.||||-... ..+.+..+. .+|+|++.+.+
T Consensus 60 ~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P 139 (366)
T KOG2655|consen 60 KETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISP 139 (366)
T ss_pred cccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccchhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCC
Confidence 347777777777776899999999999993221 112223333 68999999998
Q ss_pred CChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCcccCh----HHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHH
Q 029875 61 TARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA----KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 136 (186)
Q Consensus 61 ~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~----~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 136 (186)
+... ...+ =+..+++.+..+.+|-|+.|.|........ ...+-+..++++++....-.. ++-+....+.+
T Consensus 140 ~ghg-L~p~--Di~~Mk~l~~~vNiIPVI~KaD~lT~~El~~~K~~I~~~i~~~nI~vf~fp~~~~---d~~~~~~~~~l 213 (366)
T KOG2655|consen 140 TGHG-LKPL--DIEFMKKLSKKVNLIPVIAKADTLTKDELNQFKKRIRQDIEEHNIKVFDFPTDES---DEELKEEEQDL 213 (366)
T ss_pred CCCC-CcHh--hHHHHHHHhccccccceeeccccCCHHHHHHHHHHHHHHHHHcCcceecCCCCcc---hhhhHHHHHHH
Confidence 7641 1111 123444555567888888999986433221 223455666777776655544 44554555555
Q ss_pred hC
Q 029875 137 AG 138 (186)
Q Consensus 137 ~~ 138 (186)
..
T Consensus 214 ~~ 215 (366)
T KOG2655|consen 214 KS 215 (366)
T ss_pred hh
Confidence 44
No 370
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=93.12 E-value=0.22 Score=41.08 Aligned_cols=108 Identities=19% Similarity=0.246 Sum_probs=54.5
Q ss_pred EEEEEeCCCccccCCccccc-----cccCcEEEEEEeCCChhhHHhHH-HHHHHHHhhcCCCCEEEEEeCCCCC--C---
Q 029875 28 RFYCWDTAGQEKFGGLRDGY-----YIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVK--N--- 96 (186)
Q Consensus 28 ~l~l~Dt~G~~~~~~~~~~~-----~~~ad~vilv~D~~~~~s~~~i~-~~~~~~~~~~~~~p~ilv~nK~Dl~--~--- 96 (186)
.+.+||.||...-......| +..-|.+|++.+.. |.... .....+++. ++|+.+|-+|+|.- +
T Consensus 87 nv~lWDlPG~gt~~f~~~~Yl~~~~~~~yD~fiii~s~r----f~~ndv~La~~i~~~--gK~fyfVRTKvD~Dl~~~~~ 160 (376)
T PF05049_consen 87 NVTLWDLPGIGTPNFPPEEYLKEVKFYRYDFFIIISSER----FTENDVQLAKEIQRM--GKKFYFVRTKVDSDLYNERR 160 (376)
T ss_dssp TEEEEEE--GGGSS--HHHHHHHTTGGG-SEEEEEESSS------HHHHHHHHHHHHT--T-EEEEEE--HHHHHHHHHC
T ss_pred CCeEEeCCCCCCCCCCHHHHHHHccccccCEEEEEeCCC----CchhhHHHHHHHHHc--CCcEEEEEecccccHhhhhc
Confidence 57899999965433333333 45679888877644 32222 233444443 78999999999961 1
Q ss_pred ---cccC-----hHHHHHH----HHcCC---cEEEeccCCC--CCchHHHHHHHHHHhCCCC
Q 029875 97 ---RQVK-----AKQVTFH----RKKNL---QYYEISAKSN--YNFEKPFLYLARKLAGDPN 141 (186)
Q Consensus 97 ---~~~~-----~~~~~~~----~~~~~---~~~~~Sa~~~--~gi~~l~~~l~~~i~~~~~ 141 (186)
+.-. ++.++-| ++.++ ++|-+|+.+- .+...+.+.|.+.+.....
T Consensus 161 ~~p~~f~~e~~L~~IR~~c~~~L~k~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~Kr 222 (376)
T PF05049_consen 161 RKPRTFNEEKLLQEIRENCLENLQKAGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPAHKR 222 (376)
T ss_dssp C-STT--HHTHHHHHHHHHHHHHHCTT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-GGGH
T ss_pred cCCcccCHHHHHHHHHHHHHHHHHHcCCCcCceEEEeCCCcccCChHHHHHHHHHHhHHHHH
Confidence 1111 1112222 12233 5888998754 4577888888888876543
No 371
>PF14331 ImcF-related_N: ImcF-related N-terminal domain
Probab=93.11 E-value=0.24 Score=39.03 Aligned_cols=88 Identities=14% Similarity=0.151 Sum_probs=46.8
Q ss_pred cCcEEEEEEeCCChhhHH----hHHH-------HHHHHHhhc-CCCCEEEEEeCCCCCCc------ccChHHHHHHHHcC
Q 029875 50 HGQCAIIMFDVTARLTYK----NVPT-------WHRDLCRVC-ENIPIVLCGNKVDVKNR------QVKAKQVTFHRKKN 111 (186)
Q Consensus 50 ~ad~vilv~D~~~~~s~~----~i~~-------~~~~~~~~~-~~~p~ilv~nK~Dl~~~------~~~~~~~~~~~~~~ 111 (186)
..+|||+++|+.+-..-. .+.. -+.++.... -..|+.||.||+|+... ....+ ....-+|
T Consensus 25 PlnGvil~vs~~~Ll~~~~~~r~l~~~a~~lR~rL~el~~~lg~~~PVYvv~Tk~D~l~GF~ef~~~L~~~--~r~q~lG 102 (266)
T PF14331_consen 25 PLNGVILTVSVDDLLNADEAERELEALARALRQRLEELQRTLGVRLPVYVVFTKCDLLPGFDEFFSDLSEE--EREQVLG 102 (266)
T ss_pred CCCEEEEEEEHHHHhcCChhhhHHHHHHHHHHHHHHHHHHHhCCCCCeEeeeECCCcccCHHHHHHhCCHH--HHhCCcc
Confidence 469999999985422110 1222 233333322 47999999999998641 11111 1122334
Q ss_pred CcEEEeccCCCCC---chHHHHHHHHHHhCC
Q 029875 112 LQYYEISAKSNYN---FEKPFLYLARKLAGD 139 (186)
Q Consensus 112 ~~~~~~Sa~~~~g---i~~l~~~l~~~i~~~ 139 (186)
+.+-.-....+.. +.+.|..+...+...
T Consensus 103 ~t~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 133 (266)
T PF14331_consen 103 FTFPYDEDADGDAWAWFDEEFDELVARLNAR 133 (266)
T ss_pred cccCCccccccchHHHHHHHHHHHHHHHHHH
Confidence 3322222333333 777777777666543
No 372
>PRK13505 formate--tetrahydrofolate ligase; Provisional
Probab=92.98 E-value=1.2 Score=38.64 Aligned_cols=71 Identities=11% Similarity=0.071 Sum_probs=51.3
Q ss_pred HHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCcccChHHHHHHHHcCCcEEEec--cCCCCCchHHHHHHHHHHhC
Q 029875 66 YKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEIS--AKSNYNFEKPFLYLARKLAG 138 (186)
Q Consensus 66 ~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~S--a~~~~gi~~l~~~l~~~i~~ 138 (186)
+.++.+-++.++++ ++|++|++||.|.-.........++|.+.++++..+. ++=|.|-.++-+.+++.+.+
T Consensus 358 l~NL~RHIenvr~F--GvPvVVAINKFd~DTe~Ei~~I~~~c~e~Gv~va~~~~~~~Gg~Gai~LA~aVveA~~~ 430 (557)
T PRK13505 358 FANLERHIENIRKF--GVPVVVAINKFVTDTDAEIAALKELCEELGVEVALSEVWAKGGEGGVELAEKVVELIEE 430 (557)
T ss_pred HHHHHHHHHHHHHc--CCCEEEEEeCCCCCCHHHHHHHHHHHHHcCCCEEEecccccCCcchHHHHHHHHHHHhc
Confidence 34444455555553 8999999999997544344556689999999887555 45677888888888887774
No 373
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=92.61 E-value=2.4 Score=34.80 Aligned_cols=107 Identities=12% Similarity=0.162 Sum_probs=65.7
Q ss_pred ccccceEEEEEEEEEECCeEEEEEEEeCCCcccc---CCc-----------------------ccccc--ccCcEEEEEE
Q 029875 7 GKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF---GGL-----------------------RDGYY--IHGQCAIIMF 58 (186)
Q Consensus 7 ~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~---~~~-----------------------~~~~~--~~ad~vilv~ 58 (186)
..||+-+.+....+.-+|..++|.++||||--.+ ... +...+ ..+|+|++.+
T Consensus 62 ~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI 141 (373)
T COG5019 62 TSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSKCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFI 141 (373)
T ss_pred CCcceEEEeeeeeeecCCeEEEEEEeccCCccccccccccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEe
Confidence 4678878888777777899999999999994321 111 11112 2589999999
Q ss_pred eCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCccc----ChHHHHHHHHcCCcEEE
Q 029875 59 DVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV----KAKQVTFHRKKNLQYYE 116 (186)
Q Consensus 59 D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~----~~~~~~~~~~~~~~~~~ 116 (186)
-++... ...+ =+..+++....+-+|=|+.|.|...... .....+-...+++++|.
T Consensus 142 ~Ptgh~-l~~~--DIe~Mk~ls~~vNlIPVI~KaD~lT~~El~~~K~~I~~~i~~~nI~vf~ 200 (373)
T COG5019 142 RPTGHG-LKPL--DIEAMKRLSKRVNLIPVIAKADTLTDDELAEFKERIREDLEQYNIPVFD 200 (373)
T ss_pred cCCCCC-CCHH--HHHHHHHHhcccCeeeeeeccccCCHHHHHHHHHHHHHHHHHhCCceeC
Confidence 887642 1111 1233444445677888889999864221 11223444566677664
No 374
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=92.16 E-value=0.57 Score=31.26 Aligned_cols=61 Identities=10% Similarity=-0.002 Sum_probs=41.9
Q ss_pred EEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc-C-CCCEEEEEeC
Q 029875 28 RFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-E-NIPIVLCGNK 91 (186)
Q Consensus 28 ~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-~-~~p~ilv~nK 91 (186)
.+.++|||+... ......+..||.++++.+.+.. +...+..+++.+.+.. + ...+.+|+|+
T Consensus 44 D~IIiDtpp~~~--~~~~~~l~~aD~vlvvv~~~~~-s~~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 44 DYVVVDLGRSLD--EVSLAALDQADRVFLVTQQDLP-SIRNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred CEEEEeCCCCcC--HHHHHHHHHcCeEEEEecCChH-HHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 567889987543 3344577889999999988764 6666667776666543 2 3567677775
No 375
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=92.06 E-value=0.43 Score=38.30 Aligned_cols=90 Identities=14% Similarity=0.116 Sum_probs=54.2
Q ss_pred ccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCcccChHH-HHHHHHcCCcEEEeccC--C
Q 029875 45 DGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQ-VTFHRKKNLQYYEISAK--S 121 (186)
Q Consensus 45 ~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~-~~~~~~~~~~~~~~Sa~--~ 121 (186)
..-++..|++|=|-|+.-+-|-++ ..++...+.+|-|||.||+||.+....... ..+..+....++..++. .
T Consensus 41 ~~~l~~~D~iiEvrDaRiPLssrn-----~~~~~~~~~k~riiVlNK~DLad~~~~k~~iq~~~~~~~~~~~~~~c~~~~ 115 (335)
T KOG2485|consen 41 QNRLPLVDCIIEVRDARIPLSSRN-----ELFQDFLPPKPRIIVLNKMDLADPKEQKKIIQYLEWQNLESYIKLDCNKDC 115 (335)
T ss_pred HhhcccccEEEEeeccccCCcccc-----HHHHHhcCCCceEEEEecccccCchhhhHHHHHHHhhcccchhhhhhhhhh
Confidence 445678999999999987755333 122233347899999999999984444443 34444433344443333 4
Q ss_pred CCCchHHHHHHHHHHhCC
Q 029875 122 NYNFEKPFLYLARKLAGD 139 (186)
Q Consensus 122 ~~gi~~l~~~l~~~i~~~ 139 (186)
+.++..++..+.....+.
T Consensus 116 ~~~v~~l~~il~~~~~~l 133 (335)
T KOG2485|consen 116 NKQVSPLLKILTILSEEL 133 (335)
T ss_pred hhccccHHHHHHHHHHHH
Confidence 434666666555554443
No 376
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=91.39 E-value=2.8 Score=30.67 Aligned_cols=86 Identities=12% Similarity=0.187 Sum_probs=58.3
Q ss_pred cccCcEEEEEEeCCChh-------hHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCcccChHHHHHHHHcCCcEEEeccC
Q 029875 48 YIHGQCAIIMFDVTARL-------TYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAK 120 (186)
Q Consensus 48 ~~~ad~vilv~D~~~~~-------s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~ 120 (186)
++...+=.+++|..|-- -..++..|++++++......++||.|-.-..++....+...+.+.++++++.-+++
T Consensus 36 Lk~~Gik~li~DkDNTL~~~~~~~i~~~~~~~~~~l~~~~~~~~v~IvSNsaGs~~d~~~~~a~~~~~~lgIpvl~h~~k 115 (168)
T PF09419_consen 36 LKKKGIKALIFDKDNTLTPPYEDEIPPEYAEWLNELKKQFGKDRVLIVSNSAGSSDDPDGERAEALEKALGIPVLRHRAK 115 (168)
T ss_pred hhhcCceEEEEcCCCCCCCCCcCcCCHHHHHHHHHHHHHCCCCeEEEEECCCCcccCccHHHHHHHHHhhCCcEEEeCCC
Confidence 44444455666665421 12456789999988765456999999875554333445667888899999999998
Q ss_pred CCCCchHHHHHHH
Q 029875 121 SNYNFEKPFLYLA 133 (186)
Q Consensus 121 ~~~gi~~l~~~l~ 133 (186)
...+..++...+.
T Consensus 116 KP~~~~~i~~~~~ 128 (168)
T PF09419_consen 116 KPGCFREILKYFK 128 (168)
T ss_pred CCccHHHHHHHHh
Confidence 8877776666554
No 377
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=90.82 E-value=0.13 Score=40.60 Aligned_cols=103 Identities=14% Similarity=0.205 Sum_probs=59.1
Q ss_pred EEEEEEeCCCc----------cccCCcccccccc---CcEEEEEEeCCChh-hHH-hHHHHHHHHHhhcCCCCEEEEEeC
Q 029875 27 IRFYCWDTAGQ----------EKFGGLRDGYYIH---GQCAIIMFDVTARL-TYK-NVPTWHRDLCRVCENIPIVLCGNK 91 (186)
Q Consensus 27 ~~l~l~Dt~G~----------~~~~~~~~~~~~~---ad~vilv~D~~~~~-s~~-~i~~~~~~~~~~~~~~p~ilv~nK 91 (186)
-.+.+.|.||- ..+..+...|+.+ --.+.+++|++.+. .-+ ....|+.+ .++|+.+|.||
T Consensus 183 ~~~~~vDlPG~~~a~y~~~~~~d~~~~t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~ge-----~~VP~t~vfTK 257 (320)
T KOG2486|consen 183 KSWYEVDLPGYGRAGYGFELPADWDKFTKSYLLERENLVRVFLLVDASVPIQPTDNPEIAWLGE-----NNVPMTSVFTK 257 (320)
T ss_pred ceEEEEecCCcccccCCccCcchHhHhHHHHHHhhhhhheeeeeeeccCCCCCCChHHHHHHhh-----cCCCeEEeeeh
Confidence 35566799992 1223344455432 23456667776542 111 12345544 48999999999
Q ss_pred CCCCCccc------ChH----HH---HHHHHcCCcEEEeccCCCCCchHHHHHHHH
Q 029875 92 VDVKNRQV------KAK----QV---TFHRKKNLQYYEISAKSNYNFEKPFLYLAR 134 (186)
Q Consensus 92 ~Dl~~~~~------~~~----~~---~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 134 (186)
||...... ... .. +.+.....+++.+|+.++.|++.++-.+..
T Consensus 258 ~DK~k~~~~~~kKp~~~i~~~f~~l~~~~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q 313 (320)
T KOG2486|consen 258 CDKQKKVKRTGKKPGLNIKINFQGLIRGVFLVDLPWIYVSSVTSLGRDLLLLHIAQ 313 (320)
T ss_pred hhhhhhccccccCccccceeehhhccccceeccCCceeeecccccCceeeeeehhh
Confidence 99763221 111 11 111222356778999999999988766653
No 378
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=90.79 E-value=0.93 Score=40.09 Aligned_cols=91 Identities=13% Similarity=0.203 Sum_probs=54.4
Q ss_pred EEEEEeCCCccc---cCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCccc-ChH-
Q 029875 28 RFYCWDTAGQEK---FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV-KAK- 102 (186)
Q Consensus 28 ~l~l~Dt~G~~~---~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~-~~~- 102 (186)
.+.+.|.||..- ..........+||++|||..+-+.-+..+ ..++..+.+. ..-++|+.||+|..-... ..+
T Consensus 207 DivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~se-k~Ff~~vs~~--KpniFIlnnkwDasase~ec~e~ 283 (749)
T KOG0448|consen 207 DIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSE-KQFFHKVSEE--KPNIFILNNKWDASASEPECKED 283 (749)
T ss_pred cceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHH-HHHHHHhhcc--CCcEEEEechhhhhcccHHHHHH
Confidence 456779999653 34455667789999999999887644332 3344443332 334778889999864321 122
Q ss_pred HHHHHHHcC--------CcEEEeccCC
Q 029875 103 QVTFHRKKN--------LQYYEISAKS 121 (186)
Q Consensus 103 ~~~~~~~~~--------~~~~~~Sa~~ 121 (186)
..+...+++ -.++.+||+.
T Consensus 284 V~~Qi~eL~v~~~~eA~DrvfFVS~~e 310 (749)
T KOG0448|consen 284 VLKQIHELSVVTEKEAADRVFFVSAKE 310 (749)
T ss_pred HHHHHHhcCcccHhhhcCeeEEEeccc
Confidence 122222332 2488899874
No 379
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=90.70 E-value=1.1 Score=38.01 Aligned_cols=84 Identities=11% Similarity=0.069 Sum_probs=48.1
Q ss_pred EEEEEeCCCccccCCc-----cc-cccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCC-EEEEEeCCCCCCcccC
Q 029875 28 RFYCWDTAGQEKFGGL-----RD-GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKNRQVK 100 (186)
Q Consensus 28 ~l~l~Dt~G~~~~~~~-----~~-~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~~ 100 (186)
.+.|+||+|.-..... .. ..+..++.+++|+|++... +.......+.. ..+ .-+|.||.|...+ -
T Consensus 177 DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq---~av~~a~~F~~---~l~i~gvIlTKlD~~a~--~ 248 (437)
T PRK00771 177 DVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ---QAKNQAKAFHE---AVGIGGIIITKLDGTAK--G 248 (437)
T ss_pred CEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH---HHHHHHHHHHh---cCCCCEEEEecccCCCc--c
Confidence 6788899997553211 11 1133588999999997642 22122222222 233 3477899996432 1
Q ss_pred hHHHHHHHHcCCcEEEecc
Q 029875 101 AKQVTFHRKKNLQYYEISA 119 (186)
Q Consensus 101 ~~~~~~~~~~~~~~~~~Sa 119 (186)
-.........+.|+.+++.
T Consensus 249 G~~ls~~~~~~~Pi~fig~ 267 (437)
T PRK00771 249 GGALSAVAETGAPIKFIGT 267 (437)
T ss_pred cHHHHHHHHHCcCEEEEec
Confidence 2344566667777766654
No 380
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=90.30 E-value=1.3 Score=33.94 Aligned_cols=65 Identities=11% Similarity=0.047 Sum_probs=42.6
Q ss_pred EEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHh-hcCCCCEEEEEeCCCCC
Q 029875 28 RFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVK 95 (186)
Q Consensus 28 ~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~-~~~~~p~ilv~nK~Dl~ 95 (186)
.+.++|||+. ...+....+..||.+|+++..+. .++..+...+..+.+ .....++-+|.|+.+..
T Consensus 116 D~viiD~pp~--~~~~~~~~l~~ad~vii~~~~~~-~s~~~~~~~~~~l~~~~~~~~~~~iv~n~~~~~ 181 (246)
T TIGR03371 116 DWVLIDVPRG--PSPITRQALAAADLVLVVVNADA-ACYATLHQQALALFAGSGPRIGPHFLINQFDPA 181 (246)
T ss_pred CEEEEECCCC--chHHHHHHHHhCCeEEEEeCCCH-HHHHHHHHHHHHHhhcccccccceEEeeccCcc
Confidence 5778899883 34456677889999999998864 355555432222222 22345677899999854
No 381
>COG4963 CpaE Flp pilus assembly protein, ATPase CpaE [Intracellular trafficking and secretion]
Probab=89.80 E-value=1.7 Score=35.69 Aligned_cols=69 Identities=16% Similarity=0.196 Sum_probs=55.1
Q ss_pred eEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc-CCCCEEEEEeCCCCCC
Q 029875 25 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN 96 (186)
Q Consensus 25 ~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-~~~p~ilv~nK~Dl~~ 96 (186)
..+.+.++|.| ..+......++..||.+++|++.+=. +....++.+..+.+.. ...+..++.|+.....
T Consensus 216 ~~~~~vV~Dlp--~~~~~~t~~vL~~Sd~iviv~e~sl~-slR~ak~lld~l~~~r~~~~~p~lv~n~~~~~~ 285 (366)
T COG4963 216 GSFDFVVVDLP--NIWTDWTRQVLSGSDEIVIVAEPSLA-SLRNAKELLDELKRLRPNDPKPILVLNRVGVPK 285 (366)
T ss_pred ccCCeEEEcCC--CccchHHHHHHhcCCeEEEEecccHH-HHHHHHHHHHHHHHhCCCCCCceEEeeecCCCC
Confidence 46778888999 45566778899999999999998854 7777788888888876 4567888999998653
No 382
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=89.71 E-value=2.9 Score=31.37 Aligned_cols=89 Identities=10% Similarity=0.035 Sum_probs=49.8
Q ss_pred eEEEEEEEeCCCccccCCccc-cccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc--CCCC-EEEEEeCCCCCCcccC
Q 029875 25 GKIRFYCWDTAGQEKFGGLRD-GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIP-IVLCGNKVDVKNRQVK 100 (186)
Q Consensus 25 ~~~~l~l~Dt~G~~~~~~~~~-~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~--~~~p-~ilv~nK~Dl~~~~~~ 100 (186)
..+.+.|+||+|......+.. ...+.||.+|+++..+. .+...+...++.+.+.. .+.+ ..++.|+++.. ...
T Consensus 115 ~~yD~ilID~~g~~~~~~~~~~l~~~~ad~vliv~~p~~-~sl~~~~~l~~~i~~~~~~~~~~~~gvv~N~~~~~--~~~ 191 (212)
T cd02117 115 DDLDVVLYDVLGDVVCGGFAMPIREGKADEIYIVTSGEF-MALYAANNICKGIRKYAKSGGVRLGGLICNSRNTD--RET 191 (212)
T ss_pred cCCCEEEEecCCCceecccccccccccCcEEEEEecccH-HHHHHHHHHHHHHHHhCcccCCcEEEEEEeCCCCc--cHH
Confidence 357888899976543223211 11247999999998864 35544444444444332 1333 44899999853 111
Q ss_pred hHHHHHHHHcCCcEEE
Q 029875 101 AKQVTFHRKKNLQYYE 116 (186)
Q Consensus 101 ~~~~~~~~~~~~~~~~ 116 (186)
....++.+.++.+++.
T Consensus 192 ~~~~~~~~~~~~~vl~ 207 (212)
T cd02117 192 ELIDAFAERLGTQVIH 207 (212)
T ss_pred HHHHHHHHHcCCCEEE
Confidence 2234566666665443
No 383
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=89.56 E-value=0.5 Score=44.88 Aligned_cols=46 Identities=15% Similarity=0.190 Sum_probs=32.6
Q ss_pred cCcEEEEEEeCCChhh--H-------HhHHHHHHHHHhhc-CCCCEEEEEeCCCCC
Q 029875 50 HGQCAIIMFDVTARLT--Y-------KNVPTWHRDLCRVC-ENIPIVLCGNKVDVK 95 (186)
Q Consensus 50 ~ad~vilv~D~~~~~s--~-------~~i~~~~~~~~~~~-~~~p~ilv~nK~Dl~ 95 (186)
..+|||+++|+.+--+ - ..++..++++.+.. -..|+.|+.||||+.
T Consensus 201 plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk~Dll 256 (1169)
T TIGR03348 201 PLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADLL 256 (1169)
T ss_pred CCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEecchhh
Confidence 5899999999965421 1 23444555555443 589999999999985
No 384
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=88.68 E-value=3.8 Score=36.68 Aligned_cols=70 Identities=9% Similarity=0.051 Sum_probs=44.5
Q ss_pred EEEEEEeCCCccccCC-------c---cccccc--cCcEEEEEEeCCChhhHHhHHHHHHHHHhhcC---CCCEEEEEeC
Q 029875 27 IRFYCWDTAGQEKFGG-------L---RDGYYI--HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE---NIPIVLCGNK 91 (186)
Q Consensus 27 ~~l~l~Dt~G~~~~~~-------~---~~~~~~--~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~---~~p~ilv~nK 91 (186)
..+.++||||...... + ...+++ ++|++|+|..++.......-..+++.+...+. -..+|||.|.
T Consensus 166 ~~L~VIDTPGL~dt~~dq~~neeILk~Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFTh 245 (763)
T TIGR00993 166 VKIRVIDTPGLKSSASDQSKNEKILSSVKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTH 245 (763)
T ss_pred ceEEEEECCCCCccccchHHHHHHHHHHHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeC
Confidence 4677889999765321 1 112333 58999999887643322222356777766653 2578999999
Q ss_pred CCCCC
Q 029875 92 VDVKN 96 (186)
Q Consensus 92 ~Dl~~ 96 (186)
.|..+
T Consensus 246 gD~lp 250 (763)
T TIGR00993 246 AASAP 250 (763)
T ss_pred CccCC
Confidence 99864
No 385
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=88.25 E-value=7.3 Score=30.35 Aligned_cols=84 Identities=11% Similarity=0.042 Sum_probs=49.2
Q ss_pred EEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhh--cCCCCEE-EEEeCCCCCCcccChH
Q 029875 26 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIV-LCGNKVDVKNRQVKAK 102 (186)
Q Consensus 26 ~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~--~~~~p~i-lv~nK~Dl~~~~~~~~ 102 (186)
.+.+.|+||+|.-.... ....+..||.+|+++.++ ..++..+...++.+... ..+.+++ ++.|+.+.. ..
T Consensus 117 ~yD~viIDt~g~~~~~~-~~~~l~~AD~viip~~~~-~~sl~~~~~~~~~i~~~~~~~~l~i~giv~N~~~~~-----~~ 189 (270)
T PRK13185 117 DYDVILFDVLGDVVCGG-FAAPLQYADYALIVTAND-FDSIFAANRIAAAIQAKAKNYKVRLAGVIANRSAGT-----DL 189 (270)
T ss_pred cCCEEEEecCCCcccCc-ccchhhhCcEEEEEecCc-hhhHHHHHHHHHHHHhhhhccCCCceEEEEeccChH-----HH
Confidence 47788999977543222 233467799999999664 34555555544444322 2456644 788997621 22
Q ss_pred HHHHHHHcCCcEEE
Q 029875 103 QVTFHRKKNLQYYE 116 (186)
Q Consensus 103 ~~~~~~~~~~~~~~ 116 (186)
..++...++.+++.
T Consensus 190 ~~~~~~~~g~~vl~ 203 (270)
T PRK13185 190 IDKFNEAVGLKVLA 203 (270)
T ss_pred HHHHHHHcCCCEEE
Confidence 33455556655543
No 386
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=87.81 E-value=2.2 Score=35.98 Aligned_cols=87 Identities=11% Similarity=0.066 Sum_probs=49.3
Q ss_pred EEEEEEEeCCCccccCC-cccc-----ccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCccc
Q 029875 26 KIRFYCWDTAGQEKFGG-LRDG-----YYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV 99 (186)
Q Consensus 26 ~~~l~l~Dt~G~~~~~~-~~~~-----~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~ 99 (186)
.+.+.|+||+|.-.... +... ..-..+.++||+|++.. ++...+...+.... ...=+|.||.|...+.
T Consensus 182 ~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tg---q~~~~~a~~f~~~v--~i~giIlTKlD~~~~~- 255 (428)
T TIGR00959 182 GFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTG---QDAVNTAKTFNERL--GLTGVVLTKLDGDARG- 255 (428)
T ss_pred CCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccch---HHHHHHHHHHHhhC--CCCEEEEeCccCcccc-
Confidence 35678889999644322 1110 12247889999998754 23333444443322 1234778999953222
Q ss_pred ChHHHHHHHHcCCcEEEecc
Q 029875 100 KAKQVTFHRKKNLQYYEISA 119 (186)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~Sa 119 (186)
-.....+...++|+..++.
T Consensus 256 -G~~lsi~~~~~~PI~fi~~ 274 (428)
T TIGR00959 256 -GAALSVRSVTGKPIKFIGV 274 (428)
T ss_pred -cHHHHHHHHHCcCEEEEeC
Confidence 2245666677788766654
No 387
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=86.58 E-value=1.6 Score=31.05 Aligned_cols=58 Identities=12% Similarity=0.072 Sum_probs=35.8
Q ss_pred EEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCC
Q 029875 26 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVD 93 (186)
Q Consensus 26 ~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~D 93 (186)
.+.+.|+||+|... ....++..||-+|++..+.-.+.+-- .++ .+. ..--++++||+|
T Consensus 91 ~~D~iiIDtaG~~~---~~~~~~~~Ad~~ivv~tpe~~D~y~~-~k~--~~~----~~~~~~~~~k~~ 148 (148)
T cd03114 91 GFDVIIVETVGVGQ---SEVDIASMADTTVVVMAPGAGDDIQA-IKA--GIM----EIADIVVVNKAD 148 (148)
T ss_pred CCCEEEEECCccCh---hhhhHHHhCCEEEEEECCCchhHHHH-hhh--hHh----hhcCEEEEeCCC
Confidence 57788899988542 22348899999999998873322221 111 111 223467789987
No 388
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=86.14 E-value=3.8 Score=29.53 Aligned_cols=84 Identities=10% Similarity=0.028 Sum_probs=46.0
Q ss_pred EEEEEEEeCCCccccCC----ccccc--cccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCccc
Q 029875 26 KIRFYCWDTAGQEKFGG----LRDGY--YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV 99 (186)
Q Consensus 26 ~~~l~l~Dt~G~~~~~~----~~~~~--~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~ 99 (186)
...+.+.||+|...+.. ....+ ....+.+++|+|.....+ ...+...+.+... ..-+|.||.|...+.
T Consensus 82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~---~~~~~~~~~~~~~--~~~viltk~D~~~~~- 155 (173)
T cd03115 82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQD---AVNQAKAFNEALG--ITGVILTKLDGDARG- 155 (173)
T ss_pred CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChH---HHHHHHHHHhhCC--CCEEEEECCcCCCCc-
Confidence 34566789999743211 11111 124899999999965432 2233444433222 355777999975432
Q ss_pred ChHHHHHHHHcCCcEEE
Q 029875 100 KAKQVTFHRKKNLQYYE 116 (186)
Q Consensus 100 ~~~~~~~~~~~~~~~~~ 116 (186)
......+...++|+..
T Consensus 156 -g~~~~~~~~~~~p~~~ 171 (173)
T cd03115 156 -GAALSIRAVTGKPIKF 171 (173)
T ss_pred -chhhhhHHHHCcCeEe
Confidence 2233456666666544
No 389
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=85.79 E-value=3 Score=31.06 Aligned_cols=66 Identities=15% Similarity=0.077 Sum_probs=41.6
Q ss_pred EEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCC-EEEEEeCCCCC
Q 029875 26 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVK 95 (186)
Q Consensus 26 ~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p-~ilv~nK~Dl~ 95 (186)
.+.+.|+|+|..... .......+.+|.+|+|.+.... +...+...++.+.+. +.+ +-+|.||.+..
T Consensus 127 ~yD~ViiD~pp~~~~-~~~~~~~~~~D~vilV~~~~~~-~~~~~~~~~~~l~~~--~~~~~gvVlN~~~~~ 193 (204)
T TIGR01007 127 YFDYIIIDTPPIGTV-TDAAIIARACDASILVTDAGEI-KKRDVQKAKEQLEQT--GSNFLGVVLNKVDIS 193 (204)
T ss_pred cCCEEEEeCCCcccc-chHHHHHHhCCeEEEEEECCCC-CHHHHHHHHHHHHhC--CCCEEEEEEeCcccc
Confidence 467788899863211 1122345679999999999643 444555555555443 334 55899999864
No 390
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=84.76 E-value=14 Score=28.95 Aligned_cols=111 Identities=14% Similarity=0.109 Sum_probs=59.4
Q ss_pred cccceEEEEEEEEEECCeEEEEEEEeCCCcccc---CCcc-----------------------ccccc--cCcEEEEEEe
Q 029875 8 KATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF---GGLR-----------------------DGYYI--HGQCAIIMFD 59 (186)
Q Consensus 8 ~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~---~~~~-----------------------~~~~~--~ad~vilv~D 59 (186)
.-|+.+-.....+.-+|.+.++.++||||-... ...| ...+. .+++|++.+.
T Consensus 85 pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~ncWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ 164 (336)
T KOG1547|consen 85 PKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNCWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIP 164 (336)
T ss_pred cceEEEEeeeeeeeecceEEEEEEecCCCcccccCccchhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeC
Confidence 345555555555555788899999999993221 1111 11222 4789999998
Q ss_pred CCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCC---cccC-hHHHHHHHHcCCcEEEeccCC
Q 029875 60 VTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN---RQVK-AKQVTFHRKKNLQYYEISAKS 121 (186)
Q Consensus 60 ~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~---~~~~-~~~~~~~~~~~~~~~~~Sa~~ 121 (186)
++.. ++.-+. ++.+++.+.-.-++-|+-|.|... +... +...+-...+++.++.-.+.+
T Consensus 165 ptGh-sLrplD--ieflkrLt~vvNvvPVIakaDtlTleEr~~FkqrI~~el~~~~i~vYPq~~fd 227 (336)
T KOG1547|consen 165 PTGH-SLRPLD--IEFLKRLTEVVNVVPVIAKADTLTLEERSAFKQRIRKELEKHGIDVYPQDSFD 227 (336)
T ss_pred CCCC-ccCccc--HHHHHHHhhhheeeeeEeecccccHHHHHHHHHHHHHHHHhcCcccccccccc
Confidence 8754 322221 122333333455777778999642 1111 112233345666666554443
No 391
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=84.53 E-value=2.1 Score=31.26 Aligned_cols=68 Identities=15% Similarity=0.079 Sum_probs=49.0
Q ss_pred EEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCC-CEEEEEeCCCCCCc
Q 029875 27 IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENI-PIVLCGNKVDVKNR 97 (186)
Q Consensus 27 ~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~-p~ilv~nK~Dl~~~ 97 (186)
+.+.|+|||+..... ....+..||.+|++++.+.. +...+..+++.+.+..... .+.+|.|+.+..+.
T Consensus 95 yD~iiiD~~~~~~~~--~~~~l~~ad~viv~~~~~~~-~i~~~~~~~~~l~~~~~~~~~~~vv~N~v~~~~~ 163 (195)
T PF01656_consen 95 YDYIIIDTPPGLSDP--VRNALAAADYVIVPIEPDPS-SIEGAERLIELLKRLGKKLKIIGVVINRVDPGNE 163 (195)
T ss_dssp SSEEEEEECSSSSHH--HHHHHHTSSEEEEEEESSHH-HHHHHHHHHHHHHHHTHTEEEEEEEEEEETSCCH
T ss_pred ccceeecccccccHH--HHHHHHhCceeeeecCCcHH-HHHHHHHHHHHHHHhccccceEEEEEeeeCCCcc
Confidence 567788998754333 56677899999999999864 5667777777777654222 45789999987543
No 392
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=84.07 E-value=4 Score=31.39 Aligned_cols=66 Identities=15% Similarity=0.098 Sum_probs=44.7
Q ss_pred eEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHh----hcCCCCEEEEEeCCC
Q 029875 25 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR----VCENIPIVLCGNKVD 93 (186)
Q Consensus 25 ~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~----~~~~~p~ilv~nK~D 93 (186)
..+.+.|+||||... ......+..||.+|+.+.++.. ++.....++..+.. ..++.|..++.|.++
T Consensus 82 ~~yD~iiID~pp~~~--~~~~~al~~aD~vliP~~ps~~-d~~~~~~~~~~v~~~~~~~~~~l~~~iv~~~~~ 151 (231)
T PRK13849 82 QGFDYALADTHGGSS--ELNNTIIASSNLLLIPTMLTPL-DIDEALSTYRYVIELLLSENLAIPTAILRQRVP 151 (231)
T ss_pred CCCCEEEEeCCCCcc--HHHHHHHHHCCEEEEeccCcHH-HHHHHHHHHHHHHHHHHHhCCCCCeEEEEEecc
Confidence 357888999998553 4455677889999999887653 44444444433332 235778889999986
No 393
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=82.75 E-value=6.8 Score=31.84 Aligned_cols=66 Identities=18% Similarity=0.086 Sum_probs=39.6
Q ss_pred cCcEEEEEEeCCChhhHHh-HHHHHHHHHhhcCCCCEEEEEeCCCCCCcccChHHHHHHHHcC--CcEEEecc
Q 029875 50 HGQCAIIMFDVTARLTYKN-VPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKN--LQYYEISA 119 (186)
Q Consensus 50 ~ad~vilv~D~~~~~s~~~-i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~--~~~~~~Sa 119 (186)
.-|++|-|+|+.+-..-.. +.......... -=+|+.||.|+.+...........+..+ .+++.++.
T Consensus 116 ~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~----AD~ivlNK~Dlv~~~~l~~l~~~l~~lnp~A~i~~~~~ 184 (323)
T COG0523 116 RLDGVVTVVDAAHFLEGLDAIAELAEDQLAF----ADVIVLNKTDLVDAEELEALEARLRKLNPRARIIETSY 184 (323)
T ss_pred eeceEEEEEeHHHhhhhHHHHHHHHHHHHHh----CcEEEEecccCCCHHHHHHHHHHHHHhCCCCeEEEccc
Confidence 3688999999987654322 33333332222 2467789999987553233344455554 56777777
No 394
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=81.31 E-value=6.5 Score=30.59 Aligned_cols=83 Identities=12% Similarity=0.042 Sum_probs=46.4
Q ss_pred EEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhh--cCCCCEE-EEEeCCCCCCcccChH
Q 029875 26 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIV-LCGNKVDVKNRQVKAK 102 (186)
Q Consensus 26 ~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~--~~~~p~i-lv~nK~Dl~~~~~~~~ 102 (186)
.+.+.|+||+|..... .....+..||.+|++..++. .++..+...++.+... ..+.+++ +|.|+++.. ..
T Consensus 115 ~yD~vIIDt~g~~~~~-~~~~al~~aD~vlip~~p~~-~~l~~~~~~~~~i~~~~~~~~l~~~giV~Nr~~~~-----~~ 187 (267)
T cd02032 115 EYDVILFDVLGDVVCG-GFAAPLNYADYALIVTDNDF-DSIFAANRIAAAVREKAKTYKVRLAGLIANRTDKT-----DL 187 (267)
T ss_pred cCCEEEEeCCCCcccc-cchhhhhhcCEEEEEecCCc-ccHHHHHHHHHHHHHHhhccCCceEEEEEeCCCHH-----HH
Confidence 4677888997754322 12234778999999987764 3444444433333322 2355543 788999831 12
Q ss_pred HHHHHHHcCCcEE
Q 029875 103 QVTFHRKKNLQYY 115 (186)
Q Consensus 103 ~~~~~~~~~~~~~ 115 (186)
...+...++.+++
T Consensus 188 i~~~~~~~~~~vl 200 (267)
T cd02032 188 IDKFVEAVGMPVL 200 (267)
T ss_pred HHHHHHhCCCCEE
Confidence 2334445555544
No 395
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=81.20 E-value=4.8 Score=34.01 Aligned_cols=86 Identities=12% Similarity=0.008 Sum_probs=46.3
Q ss_pred EEEEEEEeCCCccccCC-----cccc-ccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCccc
Q 029875 26 KIRFYCWDTAGQEKFGG-----LRDG-YYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV 99 (186)
Q Consensus 26 ~~~l~l~Dt~G~~~~~~-----~~~~-~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~ 99 (186)
.+.+.|+||+|.-.... +... .....+-++||+|++-..... ...+.+.+. -.+--+|.||.|...+.
T Consensus 182 ~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~---~~a~~F~~~--~~~~g~IlTKlD~~arg- 255 (429)
T TIGR01425 182 NFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAE---AQAKAFKDS--VDVGSVIITKLDGHAKG- 255 (429)
T ss_pred CCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHH---HHHHHHHhc--cCCcEEEEECccCCCCc-
Confidence 46778899999643321 1111 122468899999997543222 122233221 23566889999964321
Q ss_pred ChHHHHHHHHcCCcEEEec
Q 029875 100 KAKQVTFHRKKNLQYYEIS 118 (186)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~S 118 (186)
-.........+.|+.+++
T Consensus 256 -G~aLs~~~~t~~PI~fig 273 (429)
T TIGR01425 256 -GGALSAVAATKSPIIFIG 273 (429)
T ss_pred -cHHhhhHHHHCCCeEEEc
Confidence 112344445566555444
No 396
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=81.19 E-value=2.3 Score=30.56 Aligned_cols=64 Identities=13% Similarity=-0.001 Sum_probs=36.3
Q ss_pred EEEEEEEeCCCccccCCcc--------ccccccCcEEEEEEeCCChhhHH-hHHHHHHHHHhhcCCCCEEEEEeCCCC
Q 029875 26 KIRFYCWDTAGQEKFGGLR--------DGYYIHGQCAIIMFDVTARLTYK-NVPTWHRDLCRVCENIPIVLCGNKVDV 94 (186)
Q Consensus 26 ~~~l~l~Dt~G~~~~~~~~--------~~~~~~ad~vilv~D~~~~~s~~-~i~~~~~~~~~~~~~~p~ilv~nK~Dl 94 (186)
.....+.||+|...-..+. ....-..+++++++|+....... ....+..++.. .. +||.||+|+
T Consensus 86 ~~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~----ad-~ivlnk~dl 158 (158)
T cd03112 86 AFDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAF----AD-RILLNKTDL 158 (158)
T ss_pred CCCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHH----CC-EEEEecccC
Confidence 4566788999964322211 11233589999999987543321 11223333333 23 457899996
No 397
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=81.05 E-value=4.4 Score=29.15 Aligned_cols=65 Identities=17% Similarity=0.144 Sum_probs=43.5
Q ss_pred eEEEEEEEeCCCccccCCcccccc--ccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCE-EEEEeCCCC
Q 029875 25 GKIRFYCWDTAGQEKFGGLRDGYY--IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI-VLCGNKVDV 94 (186)
Q Consensus 25 ~~~~l~l~Dt~G~~~~~~~~~~~~--~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~-ilv~nK~Dl 94 (186)
..+.+.+.|||+.-. ......+ ..+|.+|++..++. .+......+++.+.+. +.++ -+|.|+.+-
T Consensus 66 ~~yD~VIiD~pp~~~--~~~~~~~~~~~ad~viiV~~p~~-~s~~~~~~~~~~l~~~--~~~~~gvv~N~~~~ 133 (169)
T cd02037 66 GELDYLVIDMPPGTG--DEHLTLAQSLPIDGAVIVTTPQE-VALDDVRKAIDMFKKV--NIPILGVVENMSYF 133 (169)
T ss_pred CCCCEEEEeCCCCCc--HHHHHHHhccCCCeEEEEECCch-hhHHHHHHHHHHHHhc--CCCeEEEEEcCCcc
Confidence 356778889987532 2122222 57899999997774 5667777777777765 4444 478999874
No 398
>PRK10867 signal recognition particle protein; Provisional
Probab=80.99 E-value=7.6 Score=32.89 Aligned_cols=87 Identities=13% Similarity=0.066 Sum_probs=47.6
Q ss_pred EEEEEEEeCCCccccCC-ccc---cc--cccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCccc
Q 029875 26 KIRFYCWDTAGQEKFGG-LRD---GY--YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV 99 (186)
Q Consensus 26 ~~~l~l~Dt~G~~~~~~-~~~---~~--~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~ 99 (186)
.+.+.|+||+|.-.... +.. .+ .-..+.+++|+|++... +.......+.+.. ...-+|.||.|...+.
T Consensus 183 ~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~gq---~av~~a~~F~~~~--~i~giIlTKlD~~~rg- 256 (433)
T PRK10867 183 GYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTGQ---DAVNTAKAFNEAL--GLTGVILTKLDGDARG- 256 (433)
T ss_pred CCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccHH---HHHHHHHHHHhhC--CCCEEEEeCccCcccc-
Confidence 36678889999643221 111 00 12467789999987532 2223333333321 1234667999953222
Q ss_pred ChHHHHHHHHcCCcEEEecc
Q 029875 100 KAKQVTFHRKKNLQYYEISA 119 (186)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~Sa 119 (186)
-.........++|+.+++.
T Consensus 257 -G~alsi~~~~~~PI~fig~ 275 (433)
T PRK10867 257 -GAALSIRAVTGKPIKFIGT 275 (433)
T ss_pred -cHHHHHHHHHCcCEEEEeC
Confidence 2245566677788766655
No 399
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=80.93 E-value=7.6 Score=29.94 Aligned_cols=101 Identities=15% Similarity=0.142 Sum_probs=64.0
Q ss_pred EEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhH--HHHHHHHHhh-cCCCCEEEEEeCCCCCCcccChH
Q 029875 26 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV--PTWHRDLCRV-CENIPIVLCGNKVDVKNRQVKAK 102 (186)
Q Consensus 26 ~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i--~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~ 102 (186)
.+.+.|.||.|... .+....+..||.+|+=+-.+..+.-+.+ ..|+.++.+. ....|.-|+.|++.-........
T Consensus 83 ~~d~VlvDleG~as--~~~~~aia~sDlVlIP~~~s~lD~~eA~~t~~~v~~~~~~~~~~ip~~Vl~Tr~~~~~~~~~~~ 160 (231)
T PF07015_consen 83 GFDFVLVDLEGGAS--ELNDYAIARSDLVLIPMQPSQLDADEAAKTFKWVRRLEKAERRDIPAAVLFTRVPAARLTRAQR 160 (231)
T ss_pred CCCEEEEeCCCCCc--hhHHHHHHHCCEEEECCCCChHHHHHHHHHHHHHHHHHHhhCCCCCeeEEEecCCcchhhHHHH
Confidence 36778889987533 3355567789999998888865543332 3556555543 36799999999986321111111
Q ss_pred H-HHHHHHcCCcEEEeccCCCCCchHHHH
Q 029875 103 Q-VTFHRKKNLQYYEISAKSNYNFEKPFL 130 (186)
Q Consensus 103 ~-~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 130 (186)
. ..+.. ++|++.+.-.......++|.
T Consensus 161 ~~~e~~~--~lpvl~t~l~eR~Af~~m~~ 187 (231)
T PF07015_consen 161 IISEQLE--SLPVLDTELHERDAFRAMFS 187 (231)
T ss_pred HHHHHHh--cCCccccccccHHHHHHHHH
Confidence 1 22222 58888888877766666666
No 400
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=80.74 E-value=4.4 Score=31.10 Aligned_cols=65 Identities=11% Similarity=-0.055 Sum_probs=44.0
Q ss_pred EEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCC
Q 029875 26 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDV 94 (186)
Q Consensus 26 ~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl 94 (186)
.+.+.|+|+|+... ......+..||.+|+++..+- .++..+...++.+.+.. ..++.++.|+++-
T Consensus 111 ~~D~viiD~p~~~~--~~~~~~l~~aD~viiv~~~~~-~s~~~~~~~~~~l~~~~-~~~~~iviN~~~~ 175 (261)
T TIGR01968 111 EFDYVIIDCPAGIE--SGFRNAVAPADEAIVVTTPEV-SAVRDADRVIGLLEAKG-IEKIHLIVNRLRP 175 (261)
T ss_pred hCCEEEEeCCCCcC--HHHHHHHHhCCeEEEEcCCCc-HHHHHHHHHHHHHHHcC-CCceEEEEeCcCc
Confidence 46778899987543 223445678999999998864 46666666665555432 3467788899874
No 401
>cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring. This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.
Probab=80.62 E-value=23 Score=28.88 Aligned_cols=107 Identities=16% Similarity=0.114 Sum_probs=53.8
Q ss_pred EEEEEEeCCCccccCCcccccc-ccCcEEEEEEeCCChhhHH---hHHHHHHHHHhhcCCCC-EEEEEeCCCCCCcccCh
Q 029875 27 IRFYCWDTAGQEKFGGLRDGYY-IHGQCAIIMFDVTARLTYK---NVPTWHRDLCRVCENIP-IVLCGNKVDVKNRQVKA 101 (186)
Q Consensus 27 ~~l~l~Dt~G~~~~~~~~~~~~-~~ad~vilv~D~~~~~s~~---~i~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~~~ 101 (186)
+.+.|+|+.|......+..... .-++.+|+| -..+..+.. .+.+.++.+.+...+.+ +-+|.||.|...
T Consensus 148 ~DyVliD~~gdv~~ggf~l~i~~~~ad~VIVV-t~pe~~si~~A~~v~kai~~~~~lg~~~~i~GlViNr~d~~~----- 221 (329)
T cd02033 148 FDYVLLDFLGDVVCGGFGLPIARDMAQKVIVV-GSNDLQSLYVANNVCNAVEYFRKLGGNVGVAGMVINKDDGTG----- 221 (329)
T ss_pred CCEEEEecCCcceeccccchhhhcCCceEEEe-CCchHHHHHHHHHHHHHHHHHHHhCCCCCceEEEEeCcCCcc-----
Confidence 4566777766332111111111 124444444 444455553 34555555555432333 568999998532
Q ss_pred HHHHHHHHcCCcEEEec----------------cCCCCCchHHHHHHHHHHhCC
Q 029875 102 KQVTFHRKKNLQYYEIS----------------AKSNYNFEKPFLYLARKLAGD 139 (186)
Q Consensus 102 ~~~~~~~~~~~~~~~~S----------------a~~~~gi~~l~~~l~~~i~~~ 139 (186)
....+++.++++++..= ...+..+.+.|..+++.+.+.
T Consensus 222 ~ie~~ae~lgi~vLg~IP~D~~V~~a~~~g~~~~~p~s~~a~~f~~LA~~I~~~ 275 (329)
T cd02033 222 EAQAFAAHAGIPILAAIPADEELRRKSAAYQIVGRPGTTWGPLFEQLATNVAEA 275 (329)
T ss_pred hHHHHHHHhCCCEEEECCCCHHHHHHHHcCCeecCCCCHHHHHHHHHHHHHHHh
Confidence 23456666665543210 111234667788888877664
No 402
>CHL00175 minD septum-site determining protein; Validated
Probab=80.06 E-value=4.5 Score=31.74 Aligned_cols=65 Identities=12% Similarity=-0.088 Sum_probs=42.6
Q ss_pred EEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCC
Q 029875 26 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDV 94 (186)
Q Consensus 26 ~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl 94 (186)
.+.+.|+|||+.- .......+..||.+++|++.+- .+...+...++.+.+.. ...+.+|.|+++-
T Consensus 126 ~yD~VIiDtpp~~--~~~~~~~l~~aD~viiV~~p~~-~si~~~~~~~~~l~~~~-~~~~~lvvN~~~~ 190 (281)
T CHL00175 126 GYDYILIDCPAGI--DVGFINAIAPAQEAIVVTTPEI-TAIRDADRVAGLLEANG-IYNVKLLVNRVRP 190 (281)
T ss_pred CCCEEEEeCCCCC--CHHHHHHHHhcCeeEEEcCCCh-HHHHHHHHHHHHHHHcC-CCceEEEEeccCh
Confidence 5778899998753 2333445677999999988764 45555555555555432 2345678899874
No 403
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=79.63 E-value=7.4 Score=33.93 Aligned_cols=87 Identities=11% Similarity=0.158 Sum_probs=48.7
Q ss_pred EEEEEEEeCCCccccCCcccc---ccc--cCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCcccC
Q 029875 26 KIRFYCWDTAGQEKFGGLRDG---YYI--HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK 100 (186)
Q Consensus 26 ~~~l~l~Dt~G~~~~~~~~~~---~~~--~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~ 100 (186)
.+.+.|+||+|.......... .+. .....++|++.+. +..++...++.+.. ..+.-+|.||.|...+ .
T Consensus 428 ~~DLVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpAts--s~~Dl~eii~~f~~---~~~~gvILTKlDEt~~--l 500 (559)
T PRK12727 428 DYKLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANA--HFSDLDEVVRRFAH---AKPQGVVLTKLDETGR--F 500 (559)
T ss_pred cCCEEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEECCC--ChhHHHHHHHHHHh---hCCeEEEEecCcCccc--h
Confidence 467889999996433211000 010 1234677777764 23344444444433 3467799999997432 2
Q ss_pred hHHHHHHHHcCCcEEEecc
Q 029875 101 AKQVTFHRKKNLQYYEISA 119 (186)
Q Consensus 101 ~~~~~~~~~~~~~~~~~Sa 119 (186)
-....+....+.++..++.
T Consensus 501 G~aLsv~~~~~LPI~yvt~ 519 (559)
T PRK12727 501 GSALSVVVDHQMPITWVTD 519 (559)
T ss_pred hHHHHHHHHhCCCEEEEeC
Confidence 3445666677777666653
No 404
>TIGR02016 BchX chlorophyllide reductase iron protein subunit X. This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein.
Probab=79.21 E-value=23 Score=28.27 Aligned_cols=108 Identities=16% Similarity=0.084 Sum_probs=58.5
Q ss_pred EEEEEEEeCCCcccc-CCccccccccCcEEEEEEeCCChhhHH---hHHHHHHHHHhhcCCC-CEEEEEeCCCCCCcccC
Q 029875 26 KIRFYCWDTAGQEKF-GGLRDGYYIHGQCAIIMFDVTARLTYK---NVPTWHRDLCRVCENI-PIVLCGNKVDVKNRQVK 100 (186)
Q Consensus 26 ~~~l~l~Dt~G~~~~-~~~~~~~~~~ad~vilv~D~~~~~s~~---~i~~~~~~~~~~~~~~-p~ilv~nK~Dl~~~~~~ 100 (186)
.+.+.|+|++|...- ..........||.+|++...+- .++. .+..+++.+.+...+. ++-+|.|+.+..
T Consensus 122 ~yD~IliD~~~~~~~~g~~~~~a~~~Ad~viVvt~~e~-~sl~~a~~l~k~v~~~~~~~~~v~i~GVV~N~~~~~----- 195 (296)
T TIGR02016 122 DFDFVLMDFLGDVVCGGFATPLARSLAEEVIVIGSNDR-QSLYVANNICNAVEYFRKLGGRVGLLGLVVNRDDGS----- 195 (296)
T ss_pred cCCEEEEecCCCccccccccchhhhhCCeEEEEecchH-HHHHHHHHHHHHHHHHHHcCCCCcceEEEEeCCCCc-----
Confidence 578888998764210 1111222346898888876653 3443 3444444444432223 466889998742
Q ss_pred hHHHHHHHHcCCcEEEecc----------------CC-CCCchHHHHHHHHHHhCC
Q 029875 101 AKQVTFHRKKNLQYYEISA----------------KS-NYNFEKPFLYLARKLAGD 139 (186)
Q Consensus 101 ~~~~~~~~~~~~~~~~~Sa----------------~~-~~gi~~l~~~l~~~i~~~ 139 (186)
....+++++++++++..-. .. .....+.|..+++.+.+.
T Consensus 196 ~~~~~~~~~~~i~vLg~IP~d~~i~~~~~~~~~~~~~~~~~~~~~f~~la~~i~~~ 251 (296)
T TIGR02016 196 GEAQAFAREVGIPVLAAIPADEELRRKSLAYQIVGSHATPRFGKLFEELAGNVADA 251 (296)
T ss_pred cHHHHHHHHcCCCeEEECCCCHHHHHHhcCCCeeecCCCHHHHHHHHHHHHHHHHh
Confidence 2334566777765443210 01 112557777777777654
No 405
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=78.66 E-value=23 Score=27.45 Aligned_cols=84 Identities=11% Similarity=0.109 Sum_probs=47.2
Q ss_pred EEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhh--cCCCCE-EEEEeCCCCCCcccChH
Q 029875 26 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPI-VLCGNKVDVKNRQVKAK 102 (186)
Q Consensus 26 ~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~--~~~~p~-ilv~nK~Dl~~~~~~~~ 102 (186)
.+.+.|+||+|.-..... ...+.-||.+|++...+ ..++..+...++.+.+. ..+.++ .+|.|+++.. ..
T Consensus 115 ~yD~ViID~~~~~~~~~~-~~~l~aAD~vlip~~~~-~~sl~~~~~l~~~i~~~~~~~~l~~~gIV~N~~~~~-----~~ 187 (268)
T TIGR01281 115 DYDVILFDVLGDVVCGGF-ATPLQYADYALVVAAND-FDALFAANRIAASVQEKAKNYDVRLAGIIGNRSDAT-----DL 187 (268)
T ss_pred cCCEEEEecCCccccCcc-ccchhhcCEEEEEecCc-hhHHHHHHHHHHHHHHHhhcCCCceEEEEEeCCChH-----HH
Confidence 578889999774332222 23567899999987664 33444444443333322 234554 4788998743 11
Q ss_pred HHHHHHHcCCcEEE
Q 029875 103 QVTFHRKKNLQYYE 116 (186)
Q Consensus 103 ~~~~~~~~~~~~~~ 116 (186)
...+...++.+++.
T Consensus 188 ~~~~~~~~~~~vl~ 201 (268)
T TIGR01281 188 IERFNERVGMPVLG 201 (268)
T ss_pred HHHHHHHcCCCEEE
Confidence 22344455655553
No 406
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=78.51 E-value=41 Score=28.69 Aligned_cols=84 Identities=10% Similarity=0.125 Sum_probs=49.7
Q ss_pred CcEEEEEEeCCC----hhhHHhH-HHHHHHHHhhcCCCCEEEEEeCCCCCCcccChHHHHHHHHcCCcEEEeccC--CCC
Q 029875 51 GQCAIIMFDVTA----RLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAK--SNY 123 (186)
Q Consensus 51 ad~vilv~D~~~----~~s~~~i-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~--~~~ 123 (186)
.-|+++.-|.|= ++++... .+.+++++.. ++|++++.|-.+=..........++..+|+++++.+++. +..
T Consensus 146 TIGiVVTTDGSi~dipRe~Y~eAEervI~ELk~i--gKPFvillNs~~P~s~et~~L~~eL~ekY~vpVlpvnc~~l~~~ 223 (492)
T PF09547_consen 146 TIGIVVTTDGSITDIPRENYVEAEERVIEELKEI--GKPFVILLNSTKPYSEETQELAEELEEKYDVPVLPVNCEQLREE 223 (492)
T ss_pred ceeEEEecCCCccCCChHHHHHHHHHHHHHHHHh--CCCEEEEEeCCCCCCHHHHHHHHHHHHHhCCcEEEeehHHcCHH
Confidence 345666666642 3344433 3556666665 799999999886322222222446778889999988875 333
Q ss_pred CchHHHHHHHHHH
Q 029875 124 NFEKPFLYLARKL 136 (186)
Q Consensus 124 gi~~l~~~l~~~i 136 (186)
.|..++..++..+
T Consensus 224 DI~~Il~~vLyEF 236 (492)
T PF09547_consen 224 DITRILEEVLYEF 236 (492)
T ss_pred HHHHHHHHHHhcC
Confidence 4555555554433
No 407
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=78.41 E-value=5.1 Score=26.10 Aligned_cols=45 Identities=11% Similarity=0.061 Sum_probs=32.0
Q ss_pred EEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHH
Q 029875 27 IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHR 74 (186)
Q Consensus 27 ~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~ 74 (186)
+.+.++|+|+... ......+..+|.++++++.+. .++..+..+++
T Consensus 40 ~d~viiD~p~~~~--~~~~~~l~~ad~viv~~~~~~-~s~~~~~~~~~ 84 (104)
T cd02042 40 YDYIIIDTPPSLG--LLTRNALAAADLVLIPVQPSP-LDLDGLEKLLE 84 (104)
T ss_pred CCEEEEeCcCCCC--HHHHHHHHHCCEEEEeccCCH-HHHHHHHHHHH
Confidence 6678889988543 233467788999999998865 46666666655
No 408
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=78.19 E-value=25 Score=27.95 Aligned_cols=66 Identities=18% Similarity=0.198 Sum_probs=39.3
Q ss_pred EEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHH---HHHHHHhhcCCCCE-EEEEeCCCC
Q 029875 26 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT---WHRDLCRVCENIPI-VLCGNKVDV 94 (186)
Q Consensus 26 ~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~---~~~~~~~~~~~~p~-ilv~nK~Dl 94 (186)
.+.+.++||+|.-....+ ...+..||.+|++..++. .++..+.. +++.+.+ ..+.+. -++.|+.+.
T Consensus 115 ~yD~IiIDt~~~l~~~a~-~aal~~AD~viIp~~p~~-~sl~~~~~l~~~i~~~~~-~~~l~~~gvv~n~~~~ 184 (290)
T CHL00072 115 EYDIILFDVLGDVVCGGF-AAPLNYADYCIIITDNGF-DALFAANRIAASVREKAR-THPLRLAGLVGNRTSK 184 (290)
T ss_pred cCCEEEEecCCcceechh-hhhhhcCCEEEEEecCCH-HHHHHHHHHHHHHHHHhc-cCCCceEEEEEeCCCc
Confidence 467888999765222111 234577999999987764 35554444 4444433 233443 488899873
No 409
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=77.18 E-value=30 Score=26.68 Aligned_cols=65 Identities=14% Similarity=0.122 Sum_probs=37.9
Q ss_pred EEEEEEEeCCCccccCCcc-ccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc--CCCCEE-EEEeC
Q 029875 26 KIRFYCWDTAGQEKFGGLR-DGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIV-LCGNK 91 (186)
Q Consensus 26 ~~~l~l~Dt~G~~~~~~~~-~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~--~~~p~i-lv~nK 91 (186)
.+.+.|+||+|......+. .....-||.+|+++.++.. ++..+...++.+.... .+.++. ++.|+
T Consensus 116 ~yD~viID~~g~~~~~~~~~~~~~~aaD~vlip~~p~~~-sl~~~~~l~~~i~~~~~~~~~~l~gVv~n~ 184 (270)
T cd02040 116 DLDFVIYDVLGDVVCGGFAMPIREGKAQEIYIVTSGEMM-ALYAANNICKGILKYAKSGGVRLGGLICNS 184 (270)
T ss_pred CCCEEEEecccCcccCCcccccccccccEEEEEecCchH-HHHHHHHHHHHHHHhCccCCCceEEEEEec
Confidence 4778899998764332322 1222359999999988654 5555555544444432 245555 44565
No 410
>KOG0052 consensus Translation elongation factor EF-1 alpha/Tu [Translation, ribosomal structure and biogenesis]
Probab=76.73 E-value=7.6 Score=32.25 Aligned_cols=87 Identities=11% Similarity=0.074 Sum_probs=51.9
Q ss_pred cceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHH----HHHHHH-Hhh-cCCC
Q 029875 10 TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVP----TWHRDL-CRV-CENI 83 (186)
Q Consensus 10 Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~----~~~~~~-~~~-~~~~ 83 (186)
..|+.+..........++.+.+.|.+|+..+......-...||+.++.+.+.- .-|+.-. +..+.+ ..+ ..-.
T Consensus 65 ~r~i~I~~~l~~~~t~k~~i~iid~pgh~d~~k~mitg~sqaD~avliva~~~-gefEagiskngqt~ehalla~tlgv~ 143 (391)
T KOG0052|consen 65 ERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGT-GEFEAGISKNGQTREHALLAFTLGVK 143 (391)
T ss_pred ccceEEEEEeecccceeEEEEEecCCCCCceeeeEEeeEeeeceeEEEEeeec-cceeeeccccchhhhhhhhhccccce
Confidence 33433333333446678999999999998886655555777888888777721 1222111 111111 111 1357
Q ss_pred CEEEEEeCCCCCCc
Q 029875 84 PIVLCGNKVDVKNR 97 (186)
Q Consensus 84 p~ilv~nK~Dl~~~ 97 (186)
++++.+||+|..+.
T Consensus 144 qliv~v~k~D~~~~ 157 (391)
T KOG0052|consen 144 QLIVGVNKMDSTEP 157 (391)
T ss_pred eeeEEeecccccCC
Confidence 88999999997653
No 411
>cd00477 FTHFS Formyltetrahydrofolate synthetase (FTHFS) catalyzes the ATP-dependent activation of formate ion via its addition to the N10 position of tetrahydrofolate. FTHFS is a highly expressed key enzyme in both the Wood-Ljungdahl pathway of autotrophic CO2 fixation (acetogenesis) and the glycine synthase/reductase pathways of purinolysis. The key physiological role of this enzyme in acetogens is to catalyze the formylation of tetrahydrofolate, an initial step in the reduction of carbon dioxide and other one-carbon precursors to acetate. In purinolytic organisms, the enzymatic reaction is reversed, liberating formate from 10-formyltetrahydrofolate with concurrent production of ATP.
Probab=76.58 E-value=24 Score=30.54 Aligned_cols=66 Identities=9% Similarity=-0.023 Sum_probs=45.6
Q ss_pred HHHHHHhhcCCCCEEEEEeCCCCCCcccChHHHHHHHHcCCcEEEec--cCCCCCchHHHHHHHHHHhCC
Q 029875 72 WHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEIS--AKSNYNFEKPFLYLARKLAGD 139 (186)
Q Consensus 72 ~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~S--a~~~~gi~~l~~~l~~~i~~~ 139 (186)
-++.+++ -+.|++|.+|+...-.........++|.+.++++..+. ++=|.|-.++-+.+++.+.+.
T Consensus 348 Hi~n~~~--fg~p~VVaiN~F~~Dt~~Ei~~v~~~~~~~g~~~~~~~~~~~GG~Ga~eLA~~Vi~a~e~~ 415 (524)
T cd00477 348 HIENIKK--FGVPVVVAINKFSTDTDAELALVRKLAEEAGAFVAVSEHWAEGGKGAVELAEAVIEACEQP 415 (524)
T ss_pred HHHHHHH--cCCCeEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEehhhhhhhhhHHHHHHHHHHHhcCC
Confidence 3444443 37999999999974323222334588888898777664 466778899999988877643
No 412
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=76.37 E-value=6.5 Score=32.45 Aligned_cols=39 Identities=15% Similarity=0.185 Sum_probs=29.2
Q ss_pred CCCEEEEEeCCCCCCccc---ChHHHHHHHHcCCcEEEeccC
Q 029875 82 NIPIVLCGNKVDVKNRQV---KAKQVTFHRKKNLQYYEISAK 120 (186)
Q Consensus 82 ~~p~ilv~nK~Dl~~~~~---~~~~~~~~~~~~~~~~~~Sa~ 120 (186)
.+|+++++||.|...... .....+++...+.+++.+||.
T Consensus 206 ~KP~lyvaN~~e~~~~~~n~~~~~i~~~~~~~~~~vV~~sA~ 247 (372)
T COG0012 206 AKPMLYVANVSEDDLANLNEYVKRLKELAAKENAEVVPVSAA 247 (372)
T ss_pred cCCeEEEEECCcccccchhHHHHHHHHHhhhcCCcEEEeeHH
Confidence 489999999999875433 223346667777889999987
No 413
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=75.90 E-value=7.8 Score=30.69 Aligned_cols=48 Identities=23% Similarity=0.293 Sum_probs=31.6
Q ss_pred CCEEEEEeCCCCCCcccChHHHHHHHHcC-CcEEEeccCCCCCchHHHHHHHHHH
Q 029875 83 IPIVLCGNKVDVKNRQVKAKQVTFHRKKN-LQYYEISAKSNYNFEKPFLYLARKL 136 (186)
Q Consensus 83 ~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~i 136 (186)
+|++.+.||+|... -+... -.+. ...+.+||-.+-|++++++.+-..+
T Consensus 232 Vp~iyvLNkIdsIS----iEELd--ii~~iphavpISA~~~wn~d~lL~~mweyL 280 (358)
T KOG1487|consen 232 VPCIYVLNKIDSIS----IEELD--IIYTIPHAVPISAHTGWNFDKLLEKMWEYL 280 (358)
T ss_pred eeeeeeecccceee----eeccc--eeeeccceeecccccccchHHHHHHHhhcc
Confidence 47777788877421 11111 1112 2478999999999999998887766
No 414
>PRK13507 formate--tetrahydrofolate ligase; Provisional
Probab=75.86 E-value=27 Score=30.58 Aligned_cols=58 Identities=10% Similarity=-0.061 Sum_probs=41.0
Q ss_pred CCCCEEEEEeCCCCCCcccChHHHHHHHHcCCcEEEec--cCCCCCchHHHHHHHHHHhC
Q 029875 81 ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEIS--AKSNYNFEKPFLYLARKLAG 138 (186)
Q Consensus 81 ~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~S--a~~~~gi~~l~~~l~~~i~~ 138 (186)
-+.|++|.+|+...-.........+++.+.++.+..+. ++=|.|-.+|-+.+++.+.+
T Consensus 400 fg~pvVVaiN~F~~Dt~~Ei~~l~~~~~~~g~~~~v~~~wa~GGeGa~eLA~~Vv~a~e~ 459 (587)
T PRK13507 400 SGINPVVCINAFYTDTHAEIAIVRRLAEQAGARVAVSRHWEKGGEGALELADAVIDACNE 459 (587)
T ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHHHcCCCEEEechhhccchhHHHHHHHHHHHhhC
Confidence 38999999999974322222334578888888766544 35667888888888877764
No 415
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=75.72 E-value=5.9 Score=34.63 Aligned_cols=68 Identities=15% Similarity=0.153 Sum_probs=44.1
Q ss_pred EEEEEEeCCCccc-------------cCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc--CCCCEEEEEeC
Q 029875 27 IRFYCWDTAGQEK-------------FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNK 91 (186)
Q Consensus 27 ~~l~l~Dt~G~~~-------------~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~--~~~p~ilv~nK 91 (186)
-++.+.|.||.-. ..++.+.|+.+.+++|+|+--.. .+.-+.-...+-..+ .+...|+|.+|
T Consensus 412 qRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGS---VDAERSnVTDLVsq~DP~GrRTIfVLTK 488 (980)
T KOG0447|consen 412 QRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGS---VDAERSIVTDLVSQMDPHGRRTIFVLTK 488 (980)
T ss_pred ceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCC---cchhhhhHHHHHHhcCCCCCeeEEEEee
Confidence 4667889999422 23456788999999999984332 222222233333333 46889999999
Q ss_pred CCCCCc
Q 029875 92 VDVKNR 97 (186)
Q Consensus 92 ~Dl~~~ 97 (186)
.|+.+.
T Consensus 489 VDlAEk 494 (980)
T KOG0447|consen 489 VDLAEK 494 (980)
T ss_pred cchhhh
Confidence 999864
No 416
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=75.72 E-value=7.8 Score=30.27 Aligned_cols=62 Identities=15% Similarity=0.138 Sum_probs=39.4
Q ss_pred EEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEE-EEEeC
Q 029875 26 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIV-LCGNK 91 (186)
Q Consensus 26 ~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~i-lv~nK 91 (186)
.+.+.|+|||.... ..-.......+|++|+|+.... .+...+...++.+.+. +.+++ +|.|+
T Consensus 212 ~yD~ViiD~pp~~~-~~d~~~~~~~~d~vilV~~~~~-t~~~~~~~~~~~l~~~--~~~~~G~VlN~ 274 (274)
T TIGR03029 212 DYDVVIVDTPSAEH-SSDAQIVATRARGTLIVSRVNE-TRLHELTSLKEHLSGV--GVRVVGAVLNQ 274 (274)
T ss_pred cCCEEEEeCCCccc-ccHHHHHHHhCCeEEEEEECCC-CCHHHHHHHHHHHHhC--CCCEEEEEeCC
Confidence 46788889976432 1223445677999999998765 3556666666666653 45554 55553
No 417
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=75.33 E-value=7.2 Score=29.72 Aligned_cols=65 Identities=6% Similarity=-0.043 Sum_probs=41.5
Q ss_pred EEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCC-EEEEEeCCCCC
Q 029875 26 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVK 95 (186)
Q Consensus 26 ~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p-~ilv~nK~Dl~ 95 (186)
.+.+.++|||+... ......+..||.+|++.+++-. ++.......+...+ .+.+ +.++.|+.+-.
T Consensus 108 ~yD~VIiD~p~~~~--~~~~~~l~~ad~vliv~~~~~~-s~~~~~~~~~~~~~--~~~~~~~vv~N~~~~~ 173 (251)
T TIGR01969 108 DTDFLLIDAPAGLE--RDAVTALAAADELLLVVNPEIS-SITDALKTKIVAEK--LGTAILGVVLNRVTRD 173 (251)
T ss_pred hCCEEEEeCCCccC--HHHHHHHHhCCeEEEEECCCCc-hHHHHHHHHHHHHh--cCCceEEEEEECCCch
Confidence 47888999987543 3334456789999999988743 44444333333332 2344 56999999853
No 418
>PRK10818 cell division inhibitor MinD; Provisional
Probab=74.48 E-value=15 Score=28.49 Aligned_cols=66 Identities=14% Similarity=-0.008 Sum_probs=43.5
Q ss_pred EEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc-------CCCCEEEEEeCCCC
Q 029875 26 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-------ENIPIVLCGNKVDV 94 (186)
Q Consensus 26 ~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-------~~~p~ilv~nK~Dl 94 (186)
.+.+.|+|+|+.-.. .....+..||.+|++.+++. .++..+..+++.+.... ...+..++.|..+.
T Consensus 113 ~yd~viiD~p~~~~~--~~~~~l~~ad~vivv~~p~~-~sl~~~~~~l~~i~~~~~~~~~~~~~~~~~vv~n~~~~ 185 (270)
T PRK10818 113 DFEFIVCDSPAGIET--GALMALYFADEAIITTNPEV-SSVRDSDRILGILASKSRRAENGEEPIKEHLLLTRYNP 185 (270)
T ss_pred CCCEEEEeCCCCccH--HHHHHHHhCCeEEEEcCCCc-hHHHhHHHHHHHHHHhhccccccccccceEEEEeccCH
Confidence 477888999775533 33445788999999998885 36666666555554321 12335678898874
No 419
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=73.47 E-value=6.9 Score=28.43 Aligned_cols=32 Identities=25% Similarity=0.141 Sum_probs=22.1
Q ss_pred HHHHHHcCCcEEEeccCCCCCchHHHHHHHHH
Q 029875 104 VTFHRKKNLQYYEISAKSNYNFEKPFLYLARK 135 (186)
Q Consensus 104 ~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 135 (186)
.......+++++.+|++++.|++++...+..+
T Consensus 5 ~~~y~~~gy~v~~~S~~~~~g~~~l~~~l~~k 36 (161)
T PF03193_consen 5 LEQYEKLGYPVFFISAKTGEGIEELKELLKGK 36 (161)
T ss_dssp HHHHHHTTSEEEE-BTTTTTTHHHHHHHHTTS
T ss_pred HHHHHHcCCcEEEEeCCCCcCHHHHHHHhcCC
Confidence 45556677788888888888888777766543
No 420
>COG2759 MIS1 Formyltetrahydrofolate synthetase [Nucleotide transport and metabolism]
Probab=73.10 E-value=26 Score=29.96 Aligned_cols=58 Identities=12% Similarity=0.065 Sum_probs=42.8
Q ss_pred CCCEEEEEeCCCCCCcccChHHHHHHHHcCCcEEEec--cCCCCCchHHHHHHHHHHhCC
Q 029875 82 NIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEIS--AKSNYNFEKPFLYLARKLAGD 139 (186)
Q Consensus 82 ~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~S--a~~~~gi~~l~~~l~~~i~~~ 139 (186)
++|++|.+||.-.-.........+++.+.++++..+. ++-|.|-.++-+.++..+.+.
T Consensus 369 gvp~VVAIN~F~tDt~~Ei~~i~~~~~~~gv~~~ls~vwakGg~Gg~eLA~kVv~~~~~~ 428 (554)
T COG2759 369 GVPVVVAINKFPTDTEAEIAAIEKLCEEHGVEVALSEVWAKGGEGGIELAKKVVEAIEQN 428 (554)
T ss_pred CCCeEEEeccCCCCCHHHHHHHHHHHHHcCCceeehhhhhccCccHHHHHHHHHHHHhCC
Confidence 7999999999863222222234578888897766444 678889999999999998874
No 421
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=72.85 E-value=23 Score=26.48 Aligned_cols=86 Identities=13% Similarity=0.042 Sum_probs=47.7
Q ss_pred EEEEEEeCCCccccCCc----ccccc--ccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCcccC
Q 029875 27 IRFYCWDTAGQEKFGGL----RDGYY--IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK 100 (186)
Q Consensus 27 ~~l~l~Dt~G~~~~~~~----~~~~~--~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~ 100 (186)
+.+.|+||+|...+... ...++ ...+-+++|.+++.... .+..+. ...... .+-=+|.||.|...+ .
T Consensus 84 ~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~--~~~~~~-~~~~~~--~~~~lIlTKlDet~~--~ 156 (196)
T PF00448_consen 84 YDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQE--DLEQAL-AFYEAF--GIDGLILTKLDETAR--L 156 (196)
T ss_dssp SSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGH--HHHHHH-HHHHHS--STCEEEEESTTSSST--T
T ss_pred CCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChH--HHHHHH-HHhhcc--cCceEEEEeecCCCC--c
Confidence 55778899996543221 11111 15778999999987543 222222 222221 133466899996433 2
Q ss_pred hHHHHHHHHcCCcEEEecc
Q 029875 101 AKQVTFHRKKNLQYYEISA 119 (186)
Q Consensus 101 ~~~~~~~~~~~~~~~~~Sa 119 (186)
-....++...+.|+-.++.
T Consensus 157 G~~l~~~~~~~~Pi~~it~ 175 (196)
T PF00448_consen 157 GALLSLAYESGLPISYITT 175 (196)
T ss_dssp HHHHHHHHHHTSEEEEEES
T ss_pred ccceeHHHHhCCCeEEEEC
Confidence 3455677777887666653
No 422
>PF03709 OKR_DC_1_N: Orn/Lys/Arg decarboxylase, N-terminal domain; InterPro: IPR005308 This domain has a flavodoxin-like fold, and is termed the "wing" domain because of its position in the overall 3D structure. Ornithine decarboxylase from Lactobacillus 30a (L30a OrnDC, P43099 from SWISSPROT) is representative of the large, pyridoxal-5'-phosphate-dependent decarboxylases that act on lysine, arginine or ornithine. The crystal structure of the L30a OrnDC has been solved to 3.0 A resolution. Six dimers related by C6 symmetry compose the enzymatically active dodecamer (approximately 106 Da). Each monomer of L30a OrnDC can be described in terms of five sequential folding domains. The amino-terminal domain, residues 1 to 107, consists of a five-stranded beta-sheet termed the "wing" domain. Two wing domains of each dimer project inward towards the centre of the dodecamer and contribute to dodecamer stabilisation [].; GO: 0016831 carboxy-lyase activity; PDB: 3Q16_C 3N75_A 1C4K_A 1ORD_A 2VYC_D.
Probab=72.21 E-value=14 Score=25.00 Aligned_cols=42 Identities=10% Similarity=0.067 Sum_probs=31.0
Q ss_pred cCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCC
Q 029875 50 HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKV 92 (186)
Q Consensus 50 ~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~ 92 (186)
.+++..+|+|.. ....+.....++.+++...++|+++++++.
T Consensus 36 ~~~i~avvi~~d-~~~~~~~~~ll~~i~~~~~~iPVFl~~~~~ 77 (115)
T PF03709_consen 36 FTDIAAVVISWD-GEEEDEAQELLDKIRERNFGIPVFLLAERD 77 (115)
T ss_dssp TTTEEEEEEECH-HHHHHHHHHHHHHHHHHSTT-EEEEEESCC
T ss_pred CCCeeEEEEEcc-cccchhHHHHHHHHHHhCCCCCEEEEecCC
Confidence 566666777666 445555668888999988999999998855
No 423
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=71.99 E-value=5.2 Score=31.68 Aligned_cols=35 Identities=14% Similarity=0.025 Sum_probs=24.1
Q ss_pred EEEEEEeCCCccccCC----ccccc---cccCcEEEEEEeCC
Q 029875 27 IRFYCWDTAGQEKFGG----LRDGY---YIHGQCAIIMFDVT 61 (186)
Q Consensus 27 ~~l~l~Dt~G~~~~~~----~~~~~---~~~ad~vilv~D~~ 61 (186)
.+++++|+||...-.. +...+ ++.||++++|+|..
T Consensus 62 ~~i~lvD~pGl~~~a~~~~glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 62 ATIEFVDIAGLVKGASKGEGLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred eEEEEEECCCcCCCCchhhHHHHHHHHHHHhCCEEEEEEeCc
Confidence 3589999999653221 22233 46799999999974
No 424
>KOG3929 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.84 E-value=2.4 Score=33.45 Aligned_cols=60 Identities=13% Similarity=0.053 Sum_probs=33.3
Q ss_pred ccccceEEEEEEEEEECC-eEEEEEEEeCCCccccCCccccccc----cCcEEEEEEeCCChhhH
Q 029875 7 GKATIGVEVHPLDFFTNC-GKIRFYCWDTAGQEKFGGLRDGYYI----HGQCAIIMFDVTARLTY 66 (186)
Q Consensus 7 ~~~Tig~~~~~~~~~~~~-~~~~l~l~Dt~G~~~~~~~~~~~~~----~ad~vilv~D~~~~~s~ 66 (186)
..||...+|..-+-.-.+ .+-...+|..+|......+..--+. ..-.+|+|.|.++++.+
T Consensus 71 ~~ptlaLEYtygRR~~g~~~kdiaN~WELGgg~~~~~LLsVPit~~~l~~~slIL~LDls~p~~~ 135 (363)
T KOG3929|consen 71 KPPTLALEYTYGRRAKGHNPKDIANFWELGGGTSLLDLLSVPITGDTLRTFSLILVLDLSKPNDL 135 (363)
T ss_pred CCCceeeeeehhhhccCCCchhHHHHHHhcCCccHHHHhcCcccccchhhhhheeeeecCChHHH
Confidence 345555555443322222 3445678888887654443322222 13457899999998643
No 425
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=69.27 E-value=38 Score=26.76 Aligned_cols=86 Identities=8% Similarity=0.028 Sum_probs=48.9
Q ss_pred EEEEEEEeCCCccccCC-c---ccccc--ccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCccc
Q 029875 26 KIRFYCWDTAGQEKFGG-L---RDGYY--IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV 99 (186)
Q Consensus 26 ~~~l~l~Dt~G~~~~~~-~---~~~~~--~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~ 99 (186)
.+.+.|+||+|...... . ...++ ...+-++||+|++-.. .++..+++.+.. -.+-=+|.||.|...+
T Consensus 154 ~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~--~d~~~~~~~f~~---~~~~~~I~TKlDet~~-- 226 (270)
T PRK06731 154 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS--KDMIEIITNFKD---IHIDGIVFTKFDETAS-- 226 (270)
T ss_pred CCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCH--HHHHHHHHHhCC---CCCCEEEEEeecCCCC--
Confidence 46778889999754321 1 11122 2345689999987432 123334444332 2344577899996542
Q ss_pred ChHHHHHHHHcCCcEEEec
Q 029875 100 KAKQVTFHRKKNLQYYEIS 118 (186)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~S 118 (186)
.-....++...+.|+..++
T Consensus 227 ~G~~l~~~~~~~~Pi~~it 245 (270)
T PRK06731 227 SGELLKIPAVSSAPIVLMT 245 (270)
T ss_pred ccHHHHHHHHHCcCEEEEe
Confidence 2234566677777766665
No 426
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=68.70 E-value=8.8 Score=28.01 Aligned_cols=57 Identities=21% Similarity=0.217 Sum_probs=30.5
Q ss_pred cCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCcccC-hHHHHHHHHc
Q 029875 50 HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK-AKQVTFHRKK 110 (186)
Q Consensus 50 ~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~-~~~~~~~~~~ 110 (186)
.-+.+|.|+|+.+......+...+....+. . =+++.||+|+.+.... ....++.++.
T Consensus 113 ~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~~---A-DvIvlnK~D~~~~~~~i~~~~~~ir~l 170 (178)
T PF02492_consen 113 RLDSIITVVDATNFDELENIPELLREQIAF---A-DVIVLNKIDLVSDEQKIERVREMIREL 170 (178)
T ss_dssp SESEEEEEEEGTTHGGHTTHCHHHHHHHCT-----SEEEEE-GGGHHHH--HHHHHHHHHHH
T ss_pred cccceeEEeccccccccccchhhhhhcchh---c-CEEEEeccccCChhhHHHHHHHHHHHH
Confidence 368899999998764444443322222221 2 3566799999755422 3334444444
No 427
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=68.63 E-value=34 Score=28.73 Aligned_cols=87 Identities=18% Similarity=0.120 Sum_probs=47.3
Q ss_pred EEEEEEEeCCCccccCCc----cccccc--cCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCccc
Q 029875 26 KIRFYCWDTAGQEKFGGL----RDGYYI--HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV 99 (186)
Q Consensus 26 ~~~l~l~Dt~G~~~~~~~----~~~~~~--~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~ 99 (186)
.+.+.|+||+|...+... ...+.. ..+.+++|.+++.. ..++...+..+. .-.+--+|.||.|...+
T Consensus 285 ~~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~~--~~d~~~i~~~f~---~l~i~glI~TKLDET~~-- 357 (407)
T PRK12726 285 CVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGMK--SADVMTILPKLA---EIPIDGFIITKMDETTR-- 357 (407)
T ss_pred CCCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCccc--HHHHHHHHHhcC---cCCCCEEEEEcccCCCC--
Confidence 357788899997543221 111121 34667778876432 223333332221 12234577899996422
Q ss_pred ChHHHHHHHHcCCcEEEecc
Q 029875 100 KAKQVTFHRKKNLQYYEISA 119 (186)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~Sa 119 (186)
.-....++...+.|+..+|.
T Consensus 358 ~G~~Lsv~~~tglPIsylt~ 377 (407)
T PRK12726 358 IGDLYTVMQETNLPVLYMTD 377 (407)
T ss_pred ccHHHHHHHHHCCCEEEEec
Confidence 23345677777888766654
No 428
>PRK13506 formate--tetrahydrofolate ligase; Provisional
Probab=68.61 E-value=51 Score=28.98 Aligned_cols=59 Identities=8% Similarity=-0.068 Sum_probs=41.1
Q ss_pred CCCCEEEEEeCCCCCCcccChHHHHHHHH-cCCcEEEec--cCCCCCchHHHHHHHHHHhCC
Q 029875 81 ENIPIVLCGNKVDVKNRQVKAKQVTFHRK-KNLQYYEIS--AKSNYNFEKPFLYLARKLAGD 139 (186)
Q Consensus 81 ~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~-~~~~~~~~S--a~~~~gi~~l~~~l~~~i~~~ 139 (186)
-+.|++|.+|+..--.........++|.+ .++++..+. ++=|.|-.+|-+.+++.+.+.
T Consensus 392 fg~pvVVaiN~F~~Dt~~Ei~~~~~~~~~~~~~~~~~~~~wa~GGeGa~eLA~~Vv~a~e~~ 453 (578)
T PRK13506 392 YGLPVVVAINRFPTDTDEELEWLKEAVLLTGAFGCEISEAFAQGGEGATALAQAVVRACEQP 453 (578)
T ss_pred cCCCeEEEecCCCCCCHHHHHHHHHHHHHcCCCcEEEechhhccchhHHHHHHHHHHHhhCc
Confidence 38999999999964322222334578877 566766555 456778889999988777643
No 429
>PF01268 FTHFS: Formate--tetrahydrofolate ligase; InterPro: IPR000559 Formate--tetrahydrofolate ligase (6.3.4.3 from EC) (formyltetrahydrofolate synthetase) (FTHFS) is one of the enzymes participating in the transfer of one-carbon units, an essential element of various biosynthetic pathways. In many of these processes the transfers of one-carbon units are mediated by the coenzyme tetrahydrofolate (THF). In eukaryotes the FTHFS activity is expressed by a multifunctional enzyme, C-1-tetrahydrofolate synthase (C1-THF synthase), which also catalyses the dehydrogenase and cyclohydrolase activities. Two forms of C1-THF synthases are known [], one is located in the mitochondrial matrix, while the second one is cytoplasmic. In both forms the FTHFS domain consists of about 600 amino acid residues and is located in the C-terminal section of C1-THF synthase. In prokaryotes FTHFS activity is expressed by a monofunctional homotetrameric enzyme of about 560 amino acid residues []. The crystal structure of N(10)-formyltetrahydrofolate synthetase from Moorella thermoacetica shows that the subunit is composed of three domains organised around three mixed beta-sheets. There are two cavities between adjacent domains. One of them was identified as the nucleotide binding site by homology modelling. The large domain contains a seven-stranded beta-sheet surrounded by helices on both sides. The second domain contains a five-stranded beta-sheet with two alpha-helices packed on one side while the other two are a wall of the active site cavity. The third domain contains a four-stranded beta-sheet forming a half-barrel. The concave side is covered by two helices while the convex side is another wall of the large cavity. Arg 97 is likely involved in formyl phosphate binding. The tetrameric molecule is relatively flat with the shape of the letter X, and the active sites are located at the end of the subunits far from the subunit interface [].; GO: 0004329 formate-tetrahydrofolate ligase activity, 0005524 ATP binding, 0009396 folic acid-containing compound biosynthetic process; PDB: 2EO2_A 3DO6_B 1FPM_A 3RBO_A 3PZX_B 3QB6_A 1FP7_A 3SIN_B 1EG7_A 3QUS_A ....
Probab=66.53 E-value=9.5 Score=33.21 Aligned_cols=64 Identities=9% Similarity=-0.012 Sum_probs=35.3
Q ss_pred CCCCEEEEEeCCCCCCcccChHHHHHHHHcCCcEEEec--cCCCCCchHHHHHHHHHH--hCCCCccc
Q 029875 81 ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEIS--AKSNYNFEKPFLYLARKL--AGDPNLHF 144 (186)
Q Consensus 81 ~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~S--a~~~~gi~~l~~~l~~~i--~~~~~~~~ 144 (186)
-+.|+||++|+.-.-.....+...++|.+.++++..+. ++=|.|-.++-+.+++.+ .....+.+
T Consensus 370 fGvpvVVAIN~F~tDT~aEi~~I~~~~~~~Gv~~avs~~wa~GGeGa~eLA~~Vv~a~ee~~~~~fk~ 437 (557)
T PF01268_consen 370 FGVPVVVAINRFPTDTDAEIELIRELCEELGVRAAVSEHWAKGGEGAVELAEAVVEACEEEEPSNFKP 437 (557)
T ss_dssp TT--EEEEEE--TTS-HHHHHHHHHHCCCCCEEEEEC-HHHHGGGGCHHHHHHHHHH-HHHS------
T ss_pred cCCCeEEEecCCCCCCHHHHHHHHHHHHhCCCCEEEechhhcccccHHHHHHHHHHHhhccCCCCcCc
Confidence 38999999999864322222223467777788855544 456789999999999998 44444433
No 430
>PTZ00222 60S ribosomal protein L7a; Provisional
Probab=65.49 E-value=39 Score=26.53 Aligned_cols=112 Identities=13% Similarity=0.101 Sum_probs=61.0
Q ss_pred cCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCcccChHHHHHHHHcCCcEEEeccCCCCCchHHH
Q 029875 50 HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPF 129 (186)
Q Consensus 50 ~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 129 (186)
.+.+||+.-|++.. ++..|+..+-+. .++|.+++.+|.+|. .++......++-+.- .|..-...|
T Consensus 148 KAkLVIIA~DVsPi----e~vk~LpaLCrk-~~VPY~iVktKaeLG---------~AIGkKtravVAItD-~g~ed~~~l 212 (263)
T PTZ00222 148 QARMVVIANNVDPV----ELVLWMPNLCRA-NKIPYAIVKDMARLG---------DAIGRKTATCVAITD-VNAEDEAAL 212 (263)
T ss_pred CceEEEEeCCCCHH----HHHHHHHHHHHh-cCCCEEEECCHHHHH---------HHHCCCCCeEEEEee-CCcccHHHH
Confidence 47888888888764 233455555544 389999999887763 222221223333322 344455677
Q ss_pred HHHHHHHhCCCCcccccCCCCCCCccccCHHHHHHHHHHHHHHhCCC
Q 029875 130 LYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP 176 (186)
Q Consensus 130 ~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (186)
..|++.+...-.....+.-.-+...+....+..+....+-++++.++
T Consensus 213 ~~lv~~~~~~~nd~~~e~rr~wGGg~~g~ks~~~~~k~~a~~~~~~~ 259 (263)
T PTZ00222 213 KNLIRSVNARFLSRSDVIRRQWGGLQLSLRSRAELRKKHARNAGVDA 259 (263)
T ss_pred HHHHHHHHHhhccchHHHHhhccCCccCHHHHHHHHHHHHHhcccch
Confidence 77777776665544444444444444444444444444444444443
No 431
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=64.96 E-value=20 Score=26.75 Aligned_cols=48 Identities=15% Similarity=-0.011 Sum_probs=28.4
Q ss_pred EEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHH
Q 029875 28 RFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLC 77 (186)
Q Consensus 28 ~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~ 77 (186)
.+.++|+|..-.. ......+..+|.+|+|+..... +...+...++.+.
T Consensus 150 D~IiiD~pp~~~~-~~~~~l~~~aD~viiV~~~~~~-~~~~~~~~~~~l~ 197 (207)
T TIGR03018 150 RIIIIDTPPLLVF-SEARALARLVGQIVLVVEEGRT-TQEAVKEALSALE 197 (207)
T ss_pred CEEEEECCCCcch-hHHHHHHHhCCEEEEEEECCCC-CHHHHHHHHHHhc
Confidence 4677788754432 2233445668888888887754 4444555555544
No 432
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=64.91 E-value=33 Score=28.82 Aligned_cols=85 Identities=15% Similarity=0.224 Sum_probs=47.9
Q ss_pred EEEEEEEeCCCccccCCcc----ccccc--cCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCE-EEEEeCCCCCCcc
Q 029875 26 KIRFYCWDTAGQEKFGGLR----DGYYI--HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI-VLCGNKVDVKNRQ 98 (186)
Q Consensus 26 ~~~l~l~Dt~G~~~~~~~~----~~~~~--~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~-ilv~nK~Dl~~~~ 98 (186)
.+.+.|.||+|...+.... +.++. ...-+.||++++-. .+++...++.+.. .|+ -++.||.|....
T Consensus 281 ~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K--~~dlkei~~~f~~----~~i~~~I~TKlDET~s- 353 (407)
T COG1419 281 DCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTK--YEDLKEIIKQFSL----FPIDGLIFTKLDETTS- 353 (407)
T ss_pred cCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcc--hHHHHHHHHHhcc----CCcceeEEEcccccCc-
Confidence 3467888999987665432 22222 24556677777754 3344444444433 333 377899995322
Q ss_pred cChHHHHHHHHcCCcEEEec
Q 029875 99 VKAKQVTFHRKKNLQYYEIS 118 (186)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~S 118 (186)
.-....++.+.+.|+-.++
T Consensus 354 -~G~~~s~~~e~~~PV~YvT 372 (407)
T COG1419 354 -LGNLFSLMYETRLPVSYVT 372 (407)
T ss_pred -hhHHHHHHHHhCCCeEEEe
Confidence 2334456666666654443
No 433
>KOG1249 consensus Predicted GTPases [General function prediction only]
Probab=64.35 E-value=10 Score=32.91 Aligned_cols=83 Identities=17% Similarity=0.161 Sum_probs=48.7
Q ss_pred cCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCcccChHHHHHHHH---cC---------------
Q 029875 50 HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRK---KN--------------- 111 (186)
Q Consensus 50 ~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~---~~--------------- 111 (186)
+--++..|+|.++... . ....+.......-+++.+||+|+.......-...-++. ++
T Consensus 110 ~~~~~~~vvd~~d~p~--~---i~p~~~~~v~~~~~~v~~n~vdl~p~d~~~~~c~rc~~l~~~~~vk~~~~en~~p~~~ 184 (572)
T KOG1249|consen 110 NPALARKVVDLSDEPC--S---IDPLLTNDVGSPRLFVDGNKVDLLPKDSRPGYCQRCHSLLHYGMIKAGGGENLNPDFD 184 (572)
T ss_pred cccceEEeeecccCcc--c---cccchhhcccCCceEeeccccccccccccchHHHHHHhhcccceeecccccCCCcccc
Confidence 3356777777777543 1 12233333333447999999999753321111111111 10
Q ss_pred C-cEEEeccCCCCCchHHHHHHHHHHh
Q 029875 112 L-QYYEISAKSNYNFEKPFLYLARKLA 137 (186)
Q Consensus 112 ~-~~~~~Sa~~~~gi~~l~~~l~~~i~ 137 (186)
+ ....+++++|.|++++.-.+.....
T Consensus 185 f~~~~~~r~ktgyg~eeLI~~lvd~~d 211 (572)
T KOG1249|consen 185 FDHVDLIRAKTGYGIEELIVMLVDIVD 211 (572)
T ss_pred hhhhhhhhhhhcccHHHHHHHhhheee
Confidence 1 2457899999999999999887664
No 434
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=63.38 E-value=69 Score=24.90 Aligned_cols=65 Identities=14% Similarity=0.141 Sum_probs=36.8
Q ss_pred EEEEEEEeCCCccccCCc-cccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc--CCCCEE-EEEeC
Q 029875 26 KIRFYCWDTAGQEKFGGL-RDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIV-LCGNK 91 (186)
Q Consensus 26 ~~~l~l~Dt~G~~~~~~~-~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~--~~~p~i-lv~nK 91 (186)
.+.+.|+||+|......+ ......-||.+|+++.++. .++..+..+++.+.+.. .+.++. ++.|+
T Consensus 115 ~yD~iiIDt~~~~~~~~~~~~~~~~aAD~viip~~p~~-~sl~~~~~l~~~i~~~~~~~~~~~~giv~n~ 183 (275)
T TIGR01287 115 DLDFVFYDVLGDVVCGGFAMPIREGKAQEIYIVTSGEM-MALYAANNICKGILKYAKSGGVRLGGLICNS 183 (275)
T ss_pred cCCEEEEeccCcceecceeeccccccccEEEEEecchH-HHHHHHHHHHHHHHHHHhcCCCeeeEEEEcC
Confidence 578889999875433222 1122335899999997765 35555555544443322 344544 45554
No 435
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=62.27 E-value=24 Score=22.93 Aligned_cols=19 Identities=11% Similarity=0.128 Sum_probs=9.8
Q ss_pred ccccccCcEEEEEEeCCCh
Q 029875 45 DGYYIHGQCAIIMFDVTAR 63 (186)
Q Consensus 45 ~~~~~~ad~vilv~D~~~~ 63 (186)
+..+..||+||++.|..+-
T Consensus 43 ~~~i~~aD~VIv~t~~vsH 61 (97)
T PF10087_consen 43 PSKIKKADLVIVFTDYVSH 61 (97)
T ss_pred HHhcCCCCEEEEEeCCcCh
Confidence 3444555555555555543
No 436
>PRK11670 antiporter inner membrane protein; Provisional
Probab=62.25 E-value=70 Score=26.48 Aligned_cols=67 Identities=9% Similarity=-0.007 Sum_probs=37.7
Q ss_pred EEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEE-EEEeCCCCC
Q 029875 26 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIV-LCGNKVDVK 95 (186)
Q Consensus 26 ~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~i-lv~nK~Dl~ 95 (186)
.+.+.|+|||..-.-..+.-..+-.+|++|+|...... ++.+..+.++.+.+ .+.|++ +|.|+++..
T Consensus 215 ~yDyvIID~PPg~gd~~l~~~~l~aad~viiV~tp~~~-s~~da~~~i~~~~~--~~~~ilGiV~Nm~~~~ 282 (369)
T PRK11670 215 DLDYLVLDMPPGTGDIQLTLAQNIPVTGAVVVTTPQDI-ALIDAKKGIVMFEK--VEVPVLGIVENMSMHI 282 (369)
T ss_pred cCCEEEEeCCCCCchHHHHHhhhccCCeEEEEecCchh-HHHHHHHHHHHHhc--cCCCeEEEEEcCCccc
Confidence 46677889965322111222223358999999877554 33333333333332 367765 888998754
No 437
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=61.78 E-value=32 Score=26.55 Aligned_cols=69 Identities=14% Similarity=0.216 Sum_probs=34.5
Q ss_pred EEEEeCCCccccCC---ccccc------cccCcEEEEEEeCCC-hhhHHhHHHHHHHHHhhc-CCCCEEEEEeCCCCCCc
Q 029875 29 FYCWDTAGQEKFGG---LRDGY------YIHGQCAIIMFDVTA-RLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR 97 (186)
Q Consensus 29 l~l~Dt~G~~~~~~---~~~~~------~~~ad~vilv~D~~~-~~s~~~i~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~ 97 (186)
.-++|.|||-.... ..+.. ..---+++++.|+.= -++...+..-+..+.... -.+|.|=|.+|+||...
T Consensus 100 ylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsqf~vD~~KfiSG~lsAlsAMi~lE~P~INvlsKMDLlk~ 179 (273)
T KOG1534|consen 100 YLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQFLVDSTKFISGCLSALSAMISLEVPHINVLSKMDLLKD 179 (273)
T ss_pred EEEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccchhhhHHHHHHHHHHHHHHHHHhcCcchhhhhHHHHhhh
Confidence 44679999854321 11111 111345566666531 112222222222222221 47999999999999754
No 438
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=60.79 E-value=68 Score=27.25 Aligned_cols=85 Identities=8% Similarity=0.012 Sum_probs=47.3
Q ss_pred EEEEEEeCCCccccCCc----ccccc--ccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCcccC
Q 029875 27 IRFYCWDTAGQEKFGGL----RDGYY--IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK 100 (186)
Q Consensus 27 ~~l~l~Dt~G~~~~~~~----~~~~~--~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~ 100 (186)
+.+.|+||+|....... ...++ ...+.++||+|++-.. .++..+++.+.. -..-=+|.||.|...+ .
T Consensus 321 ~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~--~d~~~i~~~F~~---~~idglI~TKLDET~k--~ 393 (436)
T PRK11889 321 VDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS--KDMIEIITNFKD---IHIDGIVFTKFDETAS--S 393 (436)
T ss_pred CCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccCh--HHHHHHHHHhcC---CCCCEEEEEcccCCCC--c
Confidence 56778899996442211 11222 2356789999886432 223333444332 1233477899996432 2
Q ss_pred hHHHHHHHHcCCcEEEec
Q 029875 101 AKQVTFHRKKNLQYYEIS 118 (186)
Q Consensus 101 ~~~~~~~~~~~~~~~~~S 118 (186)
-....++...++|+..++
T Consensus 394 G~iLni~~~~~lPIsyit 411 (436)
T PRK11889 394 GELLKIPAVSSAPIVLMT 411 (436)
T ss_pred cHHHHHHHHHCcCEEEEe
Confidence 334566677777766554
No 439
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=60.76 E-value=68 Score=26.70 Aligned_cols=89 Identities=11% Similarity=-0.043 Sum_probs=47.1
Q ss_pred EEEEEEEeCCCccccCCcc----cc--ccccCcEEEEEEeCCChh-hHHhHHHHHHHHHhhc----CC--CCEEEEEeCC
Q 029875 26 KIRFYCWDTAGQEKFGGLR----DG--YYIHGQCAIIMFDVTARL-TYKNVPTWHRDLCRVC----EN--IPIVLCGNKV 92 (186)
Q Consensus 26 ~~~l~l~Dt~G~~~~~~~~----~~--~~~~ad~vilv~D~~~~~-s~~~i~~~~~~~~~~~----~~--~p~ilv~nK~ 92 (186)
...+.|+||+|...+.... .. ......-.++|++++... ...++ +..+.... .. .+-=+|.||.
T Consensus 215 ~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~ev---i~~f~~~~~~p~~~~~~~~~~I~TKl 291 (374)
T PRK14722 215 NKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEV---VQAYRSAAGQPKAALPDLAGCILTKL 291 (374)
T ss_pred CCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHH---HHHHHHhhcccccccCCCCEEEEecc
Confidence 3567788999965433221 11 112345568999987643 33332 22222221 00 1234778999
Q ss_pred CCCCcccChHHHHHHHHcCCcEEEecc
Q 029875 93 DVKNRQVKAKQVTFHRKKNLQYYEISA 119 (186)
Q Consensus 93 Dl~~~~~~~~~~~~~~~~~~~~~~~Sa 119 (186)
|...+ .-....++...+.|+..++.
T Consensus 292 DEt~~--~G~~l~~~~~~~lPi~yvt~ 316 (374)
T PRK14722 292 DEASN--LGGVLDTVIRYKLPVHYVST 316 (374)
T ss_pred ccCCC--ccHHHHHHHHHCcCeEEEec
Confidence 96432 23345666677777665553
No 440
>PRK13231 nitrogenase reductase-like protein; Reviewed
Probab=60.69 E-value=76 Score=24.49 Aligned_cols=66 Identities=12% Similarity=0.041 Sum_probs=39.2
Q ss_pred EEEEEEEeCCCccccCCcc-ccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCC
Q 029875 26 KIRFYCWDTAGQEKFGGLR-DGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVD 93 (186)
Q Consensus 26 ~~~l~l~Dt~G~~~~~~~~-~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~D 93 (186)
.+.+.|+||+|......+. ......||.+|+++.++. .++..+..+++.+....... ..++.|..+
T Consensus 113 ~yD~ViIDt~~~~~~~~~~~~~~~~aaD~vlip~~p~~-~si~~~~~~~~~i~~~~~~~-~~vv~~~~~ 179 (264)
T PRK13231 113 DIDVVIYDVLGDVVCGGFSVPLREDYADEVYIVTSGEY-MSLYAANNIARGIKKLKGKL-GGIICNCRG 179 (264)
T ss_pred CCCEEEEecCCCceEccccccccccccceeEEEecCch-hHHHHHHHHHHHHHHcCCcc-eEEEEcCCC
Confidence 4678889998754322221 122357899999987754 46666667666665543222 234555544
No 441
>PLN02759 Formate--tetrahydrofolate ligase
Probab=60.26 E-value=79 Score=28.12 Aligned_cols=58 Identities=7% Similarity=-0.077 Sum_probs=41.6
Q ss_pred CCCCEEEEEeCCCCCCcccChHHHHHHHHcC-CcEEEec--cCCCCCchHHHHHHHHHHhC
Q 029875 81 ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKN-LQYYEIS--AKSNYNFEKPFLYLARKLAG 138 (186)
Q Consensus 81 ~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~S--a~~~~gi~~l~~~l~~~i~~ 138 (186)
-+.|+||.+|+..--.....+...+++.+.+ +.+..+. ++=|.|-.+|-+.+++.+.+
T Consensus 449 fg~pvVVaiN~F~~Dt~~Ei~~v~~~~~~~ga~~~~~~~~wa~GGeGa~eLA~~Vv~a~e~ 509 (637)
T PLN02759 449 YGVNVVVAINMFATDTEAELEAVRQAALAAGAFDAVLCTHHAHGGKGAVDLGEAVQKACEG 509 (637)
T ss_pred cCCCeEEEecCCCCCCHHHHHHHHHHHHHcCCCcEEEechhhcccHHHHHHHHHHHHHHhc
Confidence 3799999999997533322233457888888 4766655 45677889999998887763
No 442
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=59.75 E-value=71 Score=27.04 Aligned_cols=90 Identities=11% Similarity=0.098 Sum_probs=49.7
Q ss_pred EEEEEEEeCCCccccCC----ccccccc---cCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCC-EEEEEeCCCCCCc
Q 029875 26 KIRFYCWDTAGQEKFGG----LRDGYYI---HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKNR 97 (186)
Q Consensus 26 ~~~l~l~Dt~G~~~~~~----~~~~~~~---~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~ 97 (186)
.+.+.|+||+|...... ....++. .-.-+++|++++-.. ..+...+..+. ..+ --+|.||.|....
T Consensus 299 ~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~--~~l~~~~~~f~----~~~~~~vI~TKlDet~~ 372 (424)
T PRK05703 299 DCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKY--EDLKDIYKHFS----RLPLDGLIFTKLDETSS 372 (424)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCH--HHHHHHHHHhC----CCCCCEEEEeccccccc
Confidence 35778889999754321 1122222 234667888886532 22333333332 223 2578999996432
Q ss_pred ccChHHHHHHHHcCCcEEEeccCCCCCc
Q 029875 98 QVKAKQVTFHRKKNLQYYEISAKSNYNF 125 (186)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 125 (186)
.-....++...++|+..++. |.+|
T Consensus 373 --~G~i~~~~~~~~lPv~yit~--Gq~V 396 (424)
T PRK05703 373 --LGSILSLLIESGLPISYLTN--GQRV 396 (424)
T ss_pred --ccHHHHHHHHHCCCEEEEeC--CCCC
Confidence 22455677777888766654 4443
No 443
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=59.72 E-value=66 Score=29.53 Aligned_cols=92 Identities=10% Similarity=-0.023 Sum_probs=48.7
Q ss_pred EEEEEEeCCCccccCC-c---cccc--cccCcEEEEEEeCCCh-hhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCccc
Q 029875 27 IRFYCWDTAGQEKFGG-L---RDGY--YIHGQCAIIMFDVTAR-LTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV 99 (186)
Q Consensus 27 ~~l~l~Dt~G~~~~~~-~---~~~~--~~~ad~vilv~D~~~~-~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~ 99 (186)
..+.|+||+|...... + .... ....+-++||+|++-. ..+.++ ++.+.....--+-=+|.||.|...+
T Consensus 264 ~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i---~~~f~~~~~~~i~glIlTKLDEt~~-- 338 (767)
T PRK14723 264 KHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEV---VHAYRHGAGEDVDGCIITKLDEATH-- 338 (767)
T ss_pred CCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHH---HHHHhhcccCCCCEEEEeccCCCCC--
Confidence 4577889999433221 1 1111 1234567899999753 333333 3333221111133477899996432
Q ss_pred ChHHHHHHHHcCCcEEEeccCCCCCc
Q 029875 100 KAKQVTFHRKKNLQYYEISAKSNYNF 125 (186)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~Sa~~~~gi 125 (186)
.-....+....++|+..++. |.+|
T Consensus 339 ~G~iL~i~~~~~lPI~yit~--GQ~V 362 (767)
T PRK14723 339 LGPALDTVIRHRLPVHYVST--GQKV 362 (767)
T ss_pred ccHHHHHHHHHCCCeEEEec--CCCC
Confidence 22345666777888766654 4444
No 444
>COG1908 FrhD Coenzyme F420-reducing hydrogenase, delta subunit [Energy production and conversion]
Probab=58.92 E-value=22 Score=24.55 Aligned_cols=57 Identities=16% Similarity=0.159 Sum_probs=40.1
Q ss_pred CEEEEEeCCCCCCcc---cChH-----HHHHHHHcCC-----cEEEeccCCCCCchHHHHHHHHHHhCCC
Q 029875 84 PIVLCGNKVDVKNRQ---VKAK-----QVTFHRKKNL-----QYYEISAKSNYNFEKPFLYLARKLAGDP 140 (186)
Q Consensus 84 p~ilv~nK~Dl~~~~---~~~~-----~~~~~~~~~~-----~~~~~Sa~~~~gi~~l~~~l~~~i~~~~ 140 (186)
-++|+|-|.+..+-. ...+ ..++..+.++ .++.+||..++.+.+.++++...+.+.-
T Consensus 56 GV~v~GC~~geCHy~~GN~ka~rR~~~lke~l~elgie~eRv~~~wiSa~E~ekf~e~~~efv~~i~~lG 125 (132)
T COG1908 56 GVLVAGCKIGECHYISGNYKAKRRMELLKELLKELGIEPERVRVLWISAAEGEKFAETINEFVERIKELG 125 (132)
T ss_pred eEEEecccccceeeeccchHHHHHHHHHHHHHHHhCCCcceEEEEEEehhhHHHHHHHHHHHHHHHHHhC
Confidence 477888888764311 1111 1245566664 5899999999999999999999987653
No 445
>PF08438 MMR_HSR1_C: GTPase of unknown function C-terminal; InterPro: IPR013646 This domain is found at the C terminus of IPR002917 from INTERPRO in archaeal and eukaryotic GTP-binding proteins. ; PDB: 1WXQ_A.
Probab=58.85 E-value=9.7 Score=25.77 Aligned_cols=31 Identities=19% Similarity=0.133 Sum_probs=16.2
Q ss_pred EEeCCCCCCcccChHHHHHHHHcC-CcEEEeccC
Q 029875 88 CGNKVDVKNRQVKAKQVTFHRKKN-LQYYEISAK 120 (186)
Q Consensus 88 v~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~Sa~ 120 (186)
++||+|++... ....++..++. ..++.|||.
T Consensus 1 AaNK~D~~~a~--~ni~kl~~~~~~~~vVp~SA~ 32 (109)
T PF08438_consen 1 AANKADLPAAD--ENIEKLKEKYPDEPVVPTSAA 32 (109)
T ss_dssp EEE-GGG-S-H--HHHHHHHHHHTT-EEEEE-HH
T ss_pred CCccccccccH--hHHHHHHHhCCCCceeeccHH
Confidence 58999975421 22334555553 678899986
No 446
>PRK10037 cell division protein; Provisional
Probab=58.85 E-value=27 Score=26.89 Aligned_cols=59 Identities=12% Similarity=0.045 Sum_probs=37.4
Q ss_pred eEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCC
Q 029875 25 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVD 93 (186)
Q Consensus 25 ~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~D 93 (186)
..+.+.|+|||+.. .......+.-||.+|+++.+... . .++.+... .+..+.++.|++.
T Consensus 116 ~~yD~iiIDtpp~~--~~~~~~al~aaD~vlvpv~~~~~---~----~i~~~~~~-~~~~~~i~~n~~~ 174 (250)
T PRK10037 116 GRYQWILLDLPRGA--SPLTRQLLSLCDHSLAIVNVDAN---C----HIRLHQQA-LPAGAHILINDLR 174 (250)
T ss_pred CCCCEEEEECCCCc--cHHHHHHHHhCCEEEEEcCcCHH---H----HHhhhccc-cCCCeEEEEecCC
Confidence 45788899998864 34566678889999999987532 1 12222222 1234556678876
No 447
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=58.72 E-value=14 Score=29.61 Aligned_cols=82 Identities=6% Similarity=-0.052 Sum_probs=50.0
Q ss_pred EEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCcccChHHHH
Q 029875 26 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVT 105 (186)
Q Consensus 26 ~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~ 105 (186)
.+.+.++|+|+.. .......+..||.+|++.+.+- .+.....++++.+..... .+.+|.|.... .... ...
T Consensus 204 ~~D~VIID~p~~~--~~~~~~~L~~AD~vliV~~~~~-~sl~~a~r~l~~l~~~~~--~~~lVv~~~~~--~~~~--~~~ 274 (322)
T TIGR03815 204 GGDLVVVDLPRRL--TPAAETALESADLVLVVVPADV-RAVAAAARVCPELGRRNP--DLRLVVRGPAP--AGLD--PEE 274 (322)
T ss_pred cCCEEEEeCCCCC--CHHHHHHHHHCCEEEEEcCCcH-HHHHHHHHHHHHHhhhCC--CeEEEEeCCCC--CCCC--HHH
Confidence 4678889998754 3345667889999999997764 466666677766655432 34455565321 1111 234
Q ss_pred HHHHcCCcEEE
Q 029875 106 FHRKKNLQYYE 116 (186)
Q Consensus 106 ~~~~~~~~~~~ 116 (186)
+.+.++.+++.
T Consensus 275 i~~~lg~~v~~ 285 (322)
T TIGR03815 275 IAESLGLPLLG 285 (322)
T ss_pred HHHHhCCCcee
Confidence 44555666554
No 448
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=57.04 E-value=25 Score=33.78 Aligned_cols=49 Identities=18% Similarity=0.198 Sum_probs=32.3
Q ss_pred cccCcEEEEEEeCCChhh----H-----HhHHHHHHHHHhhc-CCCCEEEEEeCCCCCC
Q 029875 48 YIHGQCAIIMFDVTARLT----Y-----KNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN 96 (186)
Q Consensus 48 ~~~ad~vilv~D~~~~~s----~-----~~i~~~~~~~~~~~-~~~p~ilv~nK~Dl~~ 96 (186)
.+.-+|||+.+|+.+--+ . ..++.-++++.+.. -..|+.|+.||.|+..
T Consensus 212 ~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dll~ 270 (1188)
T COG3523 212 RRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADLLP 270 (1188)
T ss_pred CCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEecccccc
Confidence 345799999999865322 1 12333344454443 4799999999999853
No 449
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=54.77 E-value=10 Score=29.54 Aligned_cols=26 Identities=19% Similarity=0.036 Sum_probs=22.8
Q ss_pred CcEEEeccCCCCCchHHHHHHHHHHh
Q 029875 112 LQYYEISAKSNYNFEKPFLYLARKLA 137 (186)
Q Consensus 112 ~~~~~~Sa~~~~gi~~l~~~l~~~i~ 137 (186)
+|++..||+++.|++.+++.+...+.
T Consensus 241 ~pv~~gSa~~~~G~~~ll~~~~~~~p 266 (268)
T cd04170 241 VPVLCGSALTNIGVRELLDALVHLLP 266 (268)
T ss_pred EEEEEeeCCCCcCHHHHHHHHHHhCC
Confidence 37899999999999999999987653
No 450
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=54.73 E-value=48 Score=26.97 Aligned_cols=110 Identities=12% Similarity=0.097 Sum_probs=61.3
Q ss_pred CCeEEEEEEEeCCCcc-------ccCCc-------cc-cc-cccCcEEEEEEeCCChh----hHHhHHHHHHHHHhhcCC
Q 029875 23 NCGKIRFYCWDTAGQE-------KFGGL-------RD-GY-YIHGQCAIIMFDVTARL----TYKNVPTWHRDLCRVCEN 82 (186)
Q Consensus 23 ~~~~~~l~l~Dt~G~~-------~~~~~-------~~-~~-~~~ad~vilv~D~~~~~----s~~~i~~~~~~~~~~~~~ 82 (186)
|...+-+.+||+...+ +|... .. .. -.+||.+-+.+..++++ +.+++...++.+... .+
T Consensus 46 n~p~ia~~v~D~~~~~~~~~i~~~~~~v~~~p~~~Ak~q~~~~GAd~Idl~~~s~dp~~~d~~~~e~~~~Vk~V~ea-vd 124 (319)
T PRK04452 46 NPPVIAMEVFDMPPEDWPEAVKEPFGDVMNDPAAWAKKCVEEYGADMITLHLISTDPNGKDKSPEEAAKTVEEVLQA-VD 124 (319)
T ss_pred CCCeEEEEEecCCCcccHHHHHHHHHHHhcCHHHHHHHHHHHhCCCEEEEECCCCCcccccchHHHHHHHHHHHHHh-CC
Confidence 4456888999996532 22222 11 11 34799999998777765 334444555555544 47
Q ss_pred CCEEEEEeCC---CC----------CCc-----ccC----hHHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHh
Q 029875 83 IPIVLCGNKV---DV----------KNR-----QVK----AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLA 137 (186)
Q Consensus 83 ~p~ilv~nK~---Dl----------~~~-----~~~----~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 137 (186)
.|++|.++.- |- .++ ... .....++.+++.+++-.+..+ ++ +...|...+.
T Consensus 125 ~PL~Id~s~n~~kD~evleaale~~~g~~pLInSat~en~~~i~~lA~~y~~~Vva~s~~D---ln-~ak~L~~~l~ 197 (319)
T PRK04452 125 VPLIIGGSGNPEKDAEVLEKVAEAAEGERCLLGSAEEDNYKKIAAAAMAYGHAVIAWSPLD---IN-LAKQLNILLT 197 (319)
T ss_pred CCEEEecCCCCCCCHHHHHHHHHHhCCCCCEEEECCHHHHHHHHHHHHHhCCeEEEEcHHH---HH-HHHHHHHHHH
Confidence 8998776642 21 001 011 123467788888777666444 22 4445554444
No 451
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=54.53 E-value=22 Score=32.26 Aligned_cols=67 Identities=9% Similarity=-0.059 Sum_probs=44.5
Q ss_pred eEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCC-EEEEEeCCCCC
Q 029875 25 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVK 95 (186)
Q Consensus 25 ~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p-~ilv~nK~Dl~ 95 (186)
..+.+.|+|||+...... .......+|++|+|... +..+...+...++.+.+. +.+ .-+|.|+.|..
T Consensus 654 ~~yD~IiID~pp~~~~~d-~~~l~~~~D~vl~v~~~-~~~~~~~~~~~~~~l~~~--~~~~~GvvlN~~~~~ 721 (754)
T TIGR01005 654 LYSDCVVVDVGTADPVRD-MRAAARLAIIMLLVTAY-DRVVVECGRADAQGISRL--NGEVTGVFLNMLDPN 721 (754)
T ss_pred hhCCEEEEcCCCcchhHH-HHHhhhhCCeEEEEEEe-CceeHHHHHHHHHHHHhc--CCceEEEEecCCChh
Confidence 357788899987644222 23345569999999875 344666677777777654 334 45899999853
No 452
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=53.41 E-value=63 Score=24.10 Aligned_cols=68 Identities=10% Similarity=0.101 Sum_probs=48.1
Q ss_pred cCcEEEEEEeCCCh--hhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCcccChHHHHHHHHcCCcEEEec
Q 029875 50 HGQCAIIMFDVTAR--LTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEIS 118 (186)
Q Consensus 50 ~ad~vilv~D~~~~--~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~S 118 (186)
+||.+-++++.... ..++.+...+..+.+.+.+.|+.++....-+.. ......-+.+.+.|..++.+|
T Consensus 82 GAdevdvv~~~g~~~~~~~~~~~~ei~~v~~~~~g~~lkvI~e~~~l~~-~~i~~a~ria~e~GaD~IKTs 151 (203)
T cd00959 82 GADEIDMVINIGALKSGDYEAVYEEIAAVVEACGGAPLKVILETGLLTD-EEIIKACEIAIEAGADFIKTS 151 (203)
T ss_pred CCCEEEEeecHHHHhCCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCCH-HHHHHHHHHHHHhCCCEEEcC
Confidence 79999999998632 234556677777777777788888877776631 112223467788899999999
No 453
>TIGR00381 cdhD CO dehydrogenase/acetyl-CoA synthase, delta subunit. This is the small subunit of a heterodimer which catalyzes the reaction CO + H2O + Acceptor = CO2 + Reduced acceptor and is involved in the synthesis of acetyl-CoA from CO2 and H2.
Probab=52.87 E-value=89 Score=26.17 Aligned_cols=67 Identities=16% Similarity=0.176 Sum_probs=39.7
Q ss_pred CCeEEEEEEEeC-CCc------cccCCcc-------ccc--cccCcEEEEEEeCCChhhHH----hHHHHHHHHHhhcCC
Q 029875 23 NCGKIRFYCWDT-AGQ------EKFGGLR-------DGY--YIHGQCAIIMFDVTARLTYK----NVPTWHRDLCRVCEN 82 (186)
Q Consensus 23 ~~~~~~l~l~Dt-~G~------~~~~~~~-------~~~--~~~ad~vilv~D~~~~~s~~----~i~~~~~~~~~~~~~ 82 (186)
|...+-+.+||+ +.. .+|.... ... .-++|++.+-..++++...+ ......+.+.+. .+
T Consensus 110 npp~ia~dV~D~~~~~~~~~i~~~~~dV~~dP~~wak~~V~~~~aD~Ialr~~S~DP~~~d~~~~e~a~~vk~V~~a-v~ 188 (389)
T TIGR00381 110 NPPVVTFDVFDIPMPGLPKPIRMHFEDVMEDPAEWARKCVKEFGADMVTIHLISTDPKLDDKSPSEAAKVLEDVLQA-VD 188 (389)
T ss_pred CCCeEEEEEecCCccccHHHHHHHHHHHhcCHHHHHHHHHHHhCCCEEEEEecCCCccccccCHHHHHHHHHHHHHh-CC
Confidence 445688899999 432 1222211 111 23699999999999887322 222334444332 47
Q ss_pred CCEEEEEe
Q 029875 83 IPIVLCGN 90 (186)
Q Consensus 83 ~p~ilv~n 90 (186)
.|++|.++
T Consensus 189 vPLIL~gs 196 (389)
T TIGR00381 189 VPIVIGGS 196 (389)
T ss_pred CCEEEeCC
Confidence 89999977
No 454
>PF07905 PucR: Purine catabolism regulatory protein-like family; InterPro: IPR012914 This domain is found in the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR, O32138 from SWISSPROT). PucR is thought to be a transcriptional regulator of genes involved in the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression []. The other members of this family are also putative regulatory proteins.
Probab=51.69 E-value=74 Score=21.62 Aligned_cols=95 Identities=8% Similarity=0.093 Sum_probs=54.7
Q ss_pred EEEEEeCCCccccCCccccccccCcEEEEE-EeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCcccChHHHHH
Q 029875 28 RFYCWDTAGQEKFGGLRDGYYIHGQCAIIM-FDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTF 106 (186)
Q Consensus 28 ~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv-~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~ 106 (186)
.+.+.|++.-.. ++++-..++-. +...+ .....+..+++.+.+. +.--+++.. ..--..+..+..+.
T Consensus 27 ~v~v~e~~d~~~-------~l~~gElvlttg~~~~~-~~~~~~~~~i~~L~~~--~~agL~i~~--~~~~~~iP~~~i~~ 94 (123)
T PF07905_consen 27 WVHVMEAPDPSD-------WLRGGELVLTTGYALRD-DDEEELREFIRELAEK--GAAGLGIKT--GRYLDEIPEEIIEL 94 (123)
T ss_pred EEEEeecCCHHH-------hCCCCeEEEECCcccCC-CCHHHHHHHHHHHHHC--CCeEEEEec--cCccccCCHHHHHH
Confidence 344556654333 35555555542 22232 1222345666666553 333444433 32223677888899
Q ss_pred HHHcCCcEEEeccCCCCCchHHHHHHHHHH
Q 029875 107 HRKKNLQYYEISAKSNYNFEKPFLYLARKL 136 (186)
Q Consensus 107 ~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 136 (186)
|+++++|++++.. +....++.+.+.+.|
T Consensus 95 A~~~~lPli~ip~--~~~f~~I~~~v~~~I 122 (123)
T PF07905_consen 95 ADELGLPLIEIPW--EVPFSDITREVMRAI 122 (123)
T ss_pred HHHcCCCEEEeCC--CCCHHHHHHHHHHHh
Confidence 9999999999988 456667777776654
No 455
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=51.67 E-value=74 Score=24.16 Aligned_cols=71 Identities=8% Similarity=0.073 Sum_probs=49.7
Q ss_pred ccCcEEEEEEeCCC--hhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCcccChHHHHHHHHcCCcEEEeccC
Q 029875 49 IHGQCAIIMFDVTA--RLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAK 120 (186)
Q Consensus 49 ~~ad~vilv~D~~~--~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~ 120 (186)
.+||-+=+|++... ...++.+...+..+.+.+.+.|+.++.-..-|.+.+. ...-+.+.+.|..|+.+|.=
T Consensus 82 ~GAdEiDvv~n~g~l~~g~~~~v~~ei~~i~~~~~g~~lKvIlE~~~L~~~ei-~~a~~ia~eaGADfvKTsTG 154 (211)
T TIGR00126 82 YGADEVDMVINIGALKDGNEEVVYDDIRAVVEACAGVLLKVIIETGLLTDEEI-RKACEICIDAGADFVKTSTG 154 (211)
T ss_pred cCCCEEEeecchHhhhCCcHHHHHHHHHHHHHHcCCCeEEEEEecCCCCHHHH-HHHHHHHHHhCCCEEEeCCC
Confidence 47999999999864 2345556666777777766788888877776544322 23446778889999999953
No 456
>PTZ00386 formyl tetrahydrofolate synthetase; Provisional
Probab=51.58 E-value=1.6e+02 Score=26.32 Aligned_cols=58 Identities=14% Similarity=0.020 Sum_probs=40.5
Q ss_pred CCCCEEEEEeCCCCCCcccChHHHHHHH-HcC-CcEEEec--cCCCCCchHHHHHHHHHHhC
Q 029875 81 ENIPIVLCGNKVDVKNRQVKAKQVTFHR-KKN-LQYYEIS--AKSNYNFEKPFLYLARKLAG 138 (186)
Q Consensus 81 ~~~p~ilv~nK~Dl~~~~~~~~~~~~~~-~~~-~~~~~~S--a~~~~gi~~l~~~l~~~i~~ 138 (186)
-+.|+||.+|+.---.........+++. +.+ +.+..+. ++=|.|-.+|-+.+++.+.+
T Consensus 436 fgvpvVVAIN~F~tDT~~Ei~~i~~~~~~~~ga~~~~~s~~~a~GG~Ga~eLA~~Vv~a~~~ 497 (625)
T PTZ00386 436 FGVPVVVALNKFSTDTDAELELVKELALQEGGAADVVVTDHWAKGGAGAVDLAQALIRVTEN 497 (625)
T ss_pred cCCCeEEEecCCCCCCHHHHHHHHHHHHHhcCCccEEEechhhccchhHHHHHHHHHHHHhc
Confidence 4899999999996432222233457787 778 4666555 45677888999998887754
No 457
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=50.56 E-value=93 Score=24.20 Aligned_cols=67 Identities=10% Similarity=0.095 Sum_probs=38.3
Q ss_pred eEEEEEEEeCCCccccCCc-cccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhh--cCCCCEE-EEEeCC
Q 029875 25 GKIRFYCWDTAGQEKFGGL-RDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIV-LCGNKV 92 (186)
Q Consensus 25 ~~~~l~l~Dt~G~~~~~~~-~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~--~~~~p~i-lv~nK~ 92 (186)
..+-+.|+||+|.--...+ ....+.-||.+|+++... +.|+..+...++.+.+. .++..+. ++.|+.
T Consensus 116 ~~yD~ilID~~~~~~~~~l~~~~a~~aad~vlIp~~~e-~~sl~g~~~ll~~i~~~~~~~~l~i~giv~n~~ 186 (274)
T PRK13235 116 WNLDYVFYDVLGDVVCGGFAMPIRDGKAEEIYIVCSGE-MMAMYAANNICKGILKYADAGGVRLGGLICNSR 186 (274)
T ss_pred CCCCEEEEECCCCCccCCcccccccccccEEEEEecCc-hhHHHHHHHHHHHHHHHhhcCCCceeEEEEecC
Confidence 3477889999764322221 122233688999998654 45666665555544433 2455543 667864
No 458
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=49.86 E-value=76 Score=24.70 Aligned_cols=67 Identities=10% Similarity=0.091 Sum_probs=39.7
Q ss_pred EEEEEEEeCCCccccCCc-cccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhh-cCCCCEE-EEEeCCC
Q 029875 26 KIRFYCWDTAGQEKFGGL-RDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV-CENIPIV-LCGNKVD 93 (186)
Q Consensus 26 ~~~l~l~Dt~G~~~~~~~-~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~-~~~~p~i-lv~nK~D 93 (186)
.+.+.|+||+|......+ ....+..||.+|++.... ..|+..+...++.+... ..+.++. ++.|+.+
T Consensus 116 ~yD~vlID~~~~~~~~~~~~~~al~aad~vlip~~p~-~~sl~~~~~~~k~l~~~~~~~l~~~GiV~n~~~ 185 (273)
T PRK13232 116 DLDYVFYDVLGDVVCGGFAMPIREGKAKEIYIVASGE-LMAIYAANNICKGLAKFAKGGARLGGIICNSRN 185 (273)
T ss_pred cCCEEEEecCCCeeECCEeccccccccceEEEecCch-HHHHHHHHHHHHHHHHHhCCCCceeEEEEeCCC
Confidence 467788899765421211 122234789999988764 44666555555555543 2456654 7778764
No 459
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=49.58 E-value=34 Score=29.07 Aligned_cols=42 Identities=21% Similarity=0.179 Sum_probs=26.1
Q ss_pred EEEEEEeCCCccccCC-ccc-----cccccCcEEEEEEeCCChhhHHh
Q 029875 27 IRFYCWDTAGQEKFGG-LRD-----GYYIHGQCAIIMFDVTARLTYKN 68 (186)
Q Consensus 27 ~~l~l~Dt~G~~~~~~-~~~-----~~~~~ad~vilv~D~~~~~s~~~ 68 (186)
+.+.|+||+|.-.... +.. .-.-+.|=++||+|+.-.+...+
T Consensus 183 ~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~ 230 (451)
T COG0541 183 YDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAVN 230 (451)
T ss_pred CCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchHHHH
Confidence 4677889999654432 111 11235788999999976554333
No 460
>PF12327 FtsZ_C: FtsZ family, C-terminal domain; InterPro: IPR024757 The FtsZ family of proteins are involved in polymer formation. FtsZ is the polymer-forming protein of bacterial cell division. It is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ is a GTPase, like tubulin []. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria and archaea []. This entry represents a domain of FtsZ. In most FtsZ proteins is found in the C terminus, except in some alphaproteobacteria proteins where there is an extension C-terminal domain TIGR03483 from TIGRFAMs.; PDB: 2RHO_B 2RHJ_A 2VXY_A 2RHL_B 2RHH_A 2VAM_A 1W5F_B 2R75_1 2R6R_1 1RQ7_A ....
Probab=49.37 E-value=72 Score=20.77 Aligned_cols=52 Identities=12% Similarity=0.066 Sum_probs=36.6
Q ss_pred CccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCC
Q 029875 42 GLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVD 93 (186)
Q Consensus 42 ~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~D 93 (186)
++...-+++|.++++-+-....-++.++....+.+++....---++.|...|
T Consensus 27 pLl~~~i~~A~~vLvni~~~~d~~l~ev~~~~~~i~~~~~~~a~ii~G~~id 78 (95)
T PF12327_consen 27 PLLDVDIKGAKGVLVNITGGPDLSLSEVNEAMEIIREKADPDANIIWGASID 78 (95)
T ss_dssp TTSTS-GGG-SEEEEEEEE-TTS-HHHHHHHHHHHHHHSSTTSEEEEEEEE-
T ss_pred ccccCChHHhceEEEEEEcCCCCCHHHHHHHHHHHHHHhhcCceEEEEEEEC
Confidence 4555678899999999988877789888888888888775555666777666
No 461
>PF14784 ECIST_Cterm: C-terminal domain of the ECSIT protein
Probab=49.12 E-value=34 Score=23.82 Aligned_cols=38 Identities=18% Similarity=0.360 Sum_probs=26.6
Q ss_pred cCcEEEEEEeCCChhhHHhHHHHHHHHHhhcC---CCCEEE
Q 029875 50 HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE---NIPIVL 87 (186)
Q Consensus 50 ~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~---~~p~il 87 (186)
.-||.|+.+-++...+-..+..|+..+++.++ ++|+++
T Consensus 83 q~dGti~Amc~tg~~~~~sL~~WI~~Lq~~NP~L~~ipV~F 123 (126)
T PF14784_consen 83 QEDGTIFAMCMTGTSDKDSLLSWIRGLQETNPNLAQIPVLF 123 (126)
T ss_pred eccceEEEEEeccCCCHHHHHHHHHHHHhhCCchhcceEEE
Confidence 45677776666655566668899999999763 566664
No 462
>PF12098 DUF3574: Protein of unknown function (DUF3574); InterPro: IPR021957 This family of proteins is functionally uncharacterised. This protein is found in bacteria and viruses. Proteins in this family are typically between 144 to 163 amino acids in length. This protein has a conserved TPRF sequence motif.
Probab=48.99 E-value=79 Score=21.18 Aligned_cols=34 Identities=18% Similarity=0.045 Sum_probs=23.6
Q ss_pred EEEEeCCCccccCCccccccccCcEEEEEEeCCC
Q 029875 29 FYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTA 62 (186)
Q Consensus 29 l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~ 62 (186)
+++||.-||..-.......-..+-+++++++.+.
T Consensus 38 lTv~Da~GqW~~~~~g~~~rE~Skvv~i~~~~~~ 71 (104)
T PF12098_consen 38 LTVLDAYGQWRDRATGRLIRERSKVVIIVHPDTP 71 (104)
T ss_pred ceEEeccceEecCCCCcEeecccEEEEEEeCCCh
Confidence 5788999998765555555556777777776543
No 463
>COG1010 CobJ Precorrin-3B methylase [Coenzyme metabolism]
Probab=48.53 E-value=53 Score=25.55 Aligned_cols=46 Identities=9% Similarity=0.062 Sum_probs=35.2
Q ss_pred ccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc-CCCCEEEEEeCC
Q 029875 47 YYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKV 92 (186)
Q Consensus 47 ~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-~~~p~ilv~nK~ 92 (186)
....||.++.+|+..++.--..+.+.++.++++. ++.|+.++-|-.
T Consensus 151 aAA~adfVi~~YNP~s~~R~~~~~~a~eil~~~r~~~tpVgivrnag 197 (249)
T COG1010 151 AAAEADFVIALYNPISKRRPEQLGRAFEILREHRSPDTPVGIVRNAG 197 (249)
T ss_pred HHhhCCEEEEEECCccccchHHHHHHHHHHHHhcCCCCcEEEEecCC
Confidence 4557999999999987765555666667776665 689999988776
No 464
>cd03362 TOPRIM_TopoIA_TopoIII TOPRIM_TopoIA_TopoIII: The topoisomerase-primase (TORPIM) domain found in members of the type IA family of DNA topoisomerases (Topo IA) similar to topoisomerase III. Type IA DNA topoisomerases remove (relax) negative supercoils in the DNA by: cleaving one strand of the DNA duplex, covalently linking to the 5' phosphoryl end of the DNA break and, allowing the other strand of the duplex to pass through the gap. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). For topoisomerases the conserved glutamate is believed to act as a general base in strand joining and, as a general acid in strand cleavage. The DXD motif may co-ordinate Mg2+, a cofactor required for full catalytic function.
Probab=48.41 E-value=23 Score=25.18 Aligned_cols=59 Identities=8% Similarity=0.137 Sum_probs=39.3
Q ss_pred HHHHHhhcCCCCEEEEEeCCCCCCcccChHHHHHHHH---cCCcEEEeccCCCCCchHHHHH
Q 029875 73 HRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRK---KNLQYYEISAKSNYNFEKPFLY 131 (186)
Q Consensus 73 ~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~---~~~~~~~~Sa~~~~gi~~l~~~ 131 (186)
++.+.+...+.-.|++++-+|..+..+-.+..+.+.. ..+.-+.+|+.|...|...|+.
T Consensus 89 ~~~ik~l~~~ad~ii~atD~DrEGE~I~~~i~~~~~~~~~~~v~R~~fsslT~~~I~~A~~n 150 (151)
T cd03362 89 FKVLKKLAKRADEIVIATDADREGELIGREILEYAKCVKRKPVKRAWFSSLTPKAIRRAFKN 150 (151)
T ss_pred HHHHHHHHhCCCeEEEccCCCccccHHHHHHHHHhCCCCCCcEEEEEEccCCHHHHHHHHhc
Confidence 3344444335568888999998766555555555543 2345788999998888887764
No 465
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=48.33 E-value=60 Score=24.67 Aligned_cols=58 Identities=16% Similarity=-0.044 Sum_probs=36.1
Q ss_pred ccccceEEEEEEEEEECCeEEEEEEEeCCCccccCC------cccccccc--CcEEEEEEeCCChhh
Q 029875 7 GKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG------LRDGYYIH--GQCAIIMFDVTARLT 65 (186)
Q Consensus 7 ~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~------~~~~~~~~--ad~vilv~D~~~~~s 65 (186)
...|.|+-.+...+.. +....+.++||+|...... .+...+.. ++++|+..+......
T Consensus 41 ~~~T~gi~~~~~~~~~-~~~~~v~~lDteG~~~~~~~~~~~~~~~~~l~~llss~~i~n~~~~~~~~ 106 (224)
T cd01851 41 QQTTKGIWMWSVPFKL-GKEHAVLLLDTEGTDGRERGEFEDDARLFALATLLSSVLIYNSWETILGD 106 (224)
T ss_pred CCCccceEEEeccccC-CCcceEEEEecCCcCccccCchhhhhHHHHHHHHHhCEEEEeccCcccHH
Confidence 3566777766654432 3456788999999754322 12233344 888888888875443
No 466
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=47.80 E-value=1.3e+02 Score=23.41 Aligned_cols=63 Identities=10% Similarity=-0.016 Sum_probs=35.1
Q ss_pred EEEEEEEeCCCccccCCc-cccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc--CCCCEEEEE
Q 029875 26 KIRFYCWDTAGQEKFGGL-RDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCG 89 (186)
Q Consensus 26 ~~~l~l~Dt~G~~~~~~~-~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~--~~~p~ilv~ 89 (186)
.+.+.|+||+|......+ ....+.-||.+|++..++. .++..+...++.+.+.. .+.++..|.
T Consensus 116 ~yD~viID~~~~~~~~~l~~~~~~~aAD~vlIp~~p~~-~si~~~~~ll~~i~~~~~~~~~~i~gIv 181 (279)
T PRK13230 116 GPDVVIYDILGDVVCGGFAMPLQKGLADDVYIVTTCDP-MAIYAANNICKGIKRFAKRGKSALGGII 181 (279)
T ss_pred CCCEEEEecCCccccCCccccccccccceEEEeccchH-HHHHHHHHHHHHHHHHhhcCCCcceEEE
Confidence 477788999774332222 2223345899999998864 45555554444443332 344544333
No 467
>KOG2961 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=47.59 E-value=1.1e+02 Score=22.32 Aligned_cols=60 Identities=13% Similarity=0.051 Sum_probs=45.5
Q ss_pred HHHhhcCCCCEEEEEeCCCCCCcccCh-HHHHHHHHcCCcEEEeccCCCCCchHHHHHHHH
Q 029875 75 DLCRVCENIPIVLCGNKVDVKNRQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 134 (186)
Q Consensus 75 ~~~~~~~~~p~ilv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 134 (186)
..+....+..++++.|-..+.+..... .+..+..+.|++++.-|.+...+-.|+......
T Consensus 72 ~~~~vygek~i~v~SNsaG~~~~D~d~s~Ak~le~k~gIpVlRHs~kKP~ct~E~~~y~~~ 132 (190)
T KOG2961|consen 72 RCKAVYGEKDIAVFSNSAGLTEYDHDDSKAKALEAKIGIPVLRHSVKKPACTAEEVEYHFG 132 (190)
T ss_pred HHHHHhCcccEEEEecCcCccccCCchHHHHHHHHhhCCceEeecccCCCccHHHHHHHhC
Confidence 334444678899999999886544443 355677888999999999999998888877664
No 468
>PRK13705 plasmid-partitioning protein SopA; Provisional
Probab=47.00 E-value=58 Score=27.13 Aligned_cols=67 Identities=12% Similarity=0.014 Sum_probs=39.6
Q ss_pred EEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHH---HHHHhhc----CCCCEEEEEeCCCCC
Q 029875 26 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWH---RDLCRVC----ENIPIVLCGNKVDVK 95 (186)
Q Consensus 26 ~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~---~~~~~~~----~~~p~ilv~nK~Dl~ 95 (186)
.+-+.|+|||..-. .+....+.-||.+|+.+.+.. .++..+...+ ..+.... .+..+-++.|+.|-.
T Consensus 234 ~YD~IiIDtpP~l~--~~t~nal~AaD~viiP~~~~~-~s~~g~~~~~~~i~~~~~~~~~~~~~~~l~il~t~~~~~ 307 (388)
T PRK13705 234 DYDVIVIDSAPNLG--IGTINVVCAADVLIVPTPAEL-FDYTSALQFFDMLRDLLKNVDLKGFEPDVRILLTKYSNS 307 (388)
T ss_pred cCCEEEEECCCchh--HHHHHHHHHcCEEEEecCCcH-HHHHHHHHHHHHHHHHHHHHhhccCCCCeEEEEEEecCC
Confidence 47788999987543 344455667899999886643 3444443333 3332211 122345788998854
No 469
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=45.85 E-value=54 Score=20.94 Aligned_cols=23 Identities=17% Similarity=0.393 Sum_probs=14.9
Q ss_pred HHHHHHHhhcCCCCEEEEEeCCC
Q 029875 71 TWHRDLCRVCENIPIVLCGNKVD 93 (186)
Q Consensus 71 ~~~~~~~~~~~~~p~ilv~nK~D 93 (186)
.+++.+++..++.|++++.+..+
T Consensus 60 ~~~~~i~~~~~~~~ii~~t~~~~ 82 (112)
T PF00072_consen 60 ELLEQIRQINPSIPIIVVTDEDD 82 (112)
T ss_dssp HHHHHHHHHTTTSEEEEEESSTS
T ss_pred ccccccccccccccEEEecCCCC
Confidence 44555555556788888876665
No 470
>KOG2052 consensus Activin A type IB receptor, serine/threonine protein kinase [Signal transduction mechanisms]
Probab=45.00 E-value=42 Score=28.70 Aligned_cols=49 Identities=12% Similarity=0.250 Sum_probs=39.8
Q ss_pred EEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHH
Q 029875 28 RFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL 76 (186)
Q Consensus 28 ~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~ 76 (186)
+++|..+-|.-+|...|+.-+++-++.|=+|.+++..|+-.-...++-+
T Consensus 212 qI~L~e~IGkGRyGEVwrG~wrGe~VAVKiF~srdE~SWfrEtEIYqTv 260 (513)
T KOG2052|consen 212 QIVLQEIIGKGRFGEVWRGRWRGEDVAVKIFSSRDERSWFRETEIYQTV 260 (513)
T ss_pred eeEEEEEecCccccceeeccccCCceEEEEecccchhhhhhHHHHHHHH
Confidence 4556689999999999999999999999999999998875444444433
No 471
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=44.87 E-value=84 Score=25.43 Aligned_cols=85 Identities=13% Similarity=0.073 Sum_probs=42.3
Q ss_pred EEEEEEeCCCccccCCccccccc--------cCcEEEEEEeCCChhhHHh-HHHHHHHHHhhcCCCCEEEEEeCCCCCCc
Q 029875 27 IRFYCWDTAGQEKFGGLRDGYYI--------HGQCAIIMFDVTARLTYKN-VPTWHRDLCRVCENIPIVLCGNKVDVKNR 97 (186)
Q Consensus 27 ~~l~l~Dt~G~~~~~~~~~~~~~--------~ad~vilv~D~~~~~s~~~-i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 97 (186)
....++.|.|...-..+...++. .-+++|.|+|+.+...... ......++.. -=+|+.||+|+...
T Consensus 91 ~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~~-----AD~IvlnK~Dl~~~ 165 (318)
T PRK11537 91 FDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGY-----ADRILLTKTDVAGE 165 (318)
T ss_pred CCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHHHh-----CCEEEEeccccCCH
Confidence 33456677776443332222211 2488999999976432211 1111122222 23566799998753
Q ss_pred ccChHHHHHHHHcC--CcEEEec
Q 029875 98 QVKAKQVTFHRKKN--LQYYEIS 118 (186)
Q Consensus 98 ~~~~~~~~~~~~~~--~~~~~~S 118 (186)
. .......+..+ .+++.++
T Consensus 166 ~--~~~~~~l~~lnp~a~i~~~~ 186 (318)
T PRK11537 166 A--EKLRERLARINARAPVYTVV 186 (318)
T ss_pred H--HHHHHHHHHhCCCCEEEEec
Confidence 2 23334444443 4555543
No 472
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=44.51 E-value=19 Score=27.66 Aligned_cols=26 Identities=15% Similarity=0.157 Sum_probs=23.0
Q ss_pred CcEEEeccCCCCCchHHHHHHHHHHh
Q 029875 112 LQYYEISAKSNYNFEKPFLYLARKLA 137 (186)
Q Consensus 112 ~~~~~~Sa~~~~gi~~l~~~l~~~i~ 137 (186)
+|++..||.++.|+..+++.+.+.+.
T Consensus 210 ~Pv~~gsa~~~~Gv~~ll~~~~~~~p 235 (237)
T cd04168 210 FPVYHGSALKGIGIEELLEGITKLFP 235 (237)
T ss_pred EEEEEccccCCcCHHHHHHHHHHhcC
Confidence 57888899999999999999998763
No 473
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=44.49 E-value=17 Score=28.51 Aligned_cols=26 Identities=15% Similarity=0.055 Sum_probs=23.0
Q ss_pred CcEEEeccCCCCCchHHHHHHHHHHh
Q 029875 112 LQYYEISAKSNYNFEKPFLYLARKLA 137 (186)
Q Consensus 112 ~~~~~~Sa~~~~gi~~l~~~l~~~i~ 137 (186)
+|++..||.+|.|+..|++.+...+.
T Consensus 240 ~Pv~~gsa~~~~Gv~~Lld~i~~~~P 265 (267)
T cd04169 240 TPVFFGSALNNFGVQELLDALVDLAP 265 (267)
T ss_pred EEEEecccccCcCHHHHHHHHHHHCC
Confidence 47888999999999999999998763
No 474
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=44.28 E-value=1.4e+02 Score=25.01 Aligned_cols=91 Identities=8% Similarity=-0.026 Sum_probs=49.9
Q ss_pred EEEEEEEeCCCccccCCc----ccccccc---CcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCcc
Q 029875 26 KIRFYCWDTAGQEKFGGL----RDGYYIH---GQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ 98 (186)
Q Consensus 26 ~~~l~l~Dt~G~~~~~~~----~~~~~~~---ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 98 (186)
.+.+.|+||+|.-....+ ...++.. -.-++||.|++-.. ..+...+..+.. --+-=+|.||.|-..+
T Consensus 254 ~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~--~~~~~~~~~~~~---~~~~~~I~TKlDet~~- 327 (388)
T PRK12723 254 DFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKT--SDVKEIFHQFSP---FSYKTVIFTKLDETTC- 327 (388)
T ss_pred CCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCH--HHHHHHHHHhcC---CCCCEEEEEeccCCCc-
Confidence 467788899996543221 1112221 22588999998752 233333333321 1234577899996322
Q ss_pred cChHHHHHHHHcCCcEEEeccCCCCCc
Q 029875 99 VKAKQVTFHRKKNLQYYEISAKSNYNF 125 (186)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~Sa~~~~gi 125 (186)
.-....++...+.|+..++. |.+|
T Consensus 328 -~G~~l~~~~~~~~Pi~yit~--Gq~v 351 (388)
T PRK12723 328 -VGNLISLIYEMRKEVSYVTD--GQIV 351 (388)
T ss_pred -chHHHHHHHHHCCCEEEEeC--CCCC
Confidence 22344666677777665553 5555
No 475
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=44.20 E-value=1.6e+02 Score=25.05 Aligned_cols=87 Identities=11% Similarity=0.034 Sum_probs=46.6
Q ss_pred EEEEEEEeCCCccccCC-c---cccccc-----cCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCC
Q 029875 26 KIRFYCWDTAGQEKFGG-L---RDGYYI-----HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN 96 (186)
Q Consensus 26 ~~~l~l~Dt~G~~~~~~-~---~~~~~~-----~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 96 (186)
.+.+.++||+|...... . ...+++ ...-++||+|++-... .+...+..... --+-=+|.||.|-..
T Consensus 299 ~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~--~~~~~~~~f~~---~~~~glIlTKLDEt~ 373 (432)
T PRK12724 299 GSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYH--HTLTVLKAYES---LNYRRILLTKLDEAD 373 (432)
T ss_pred CCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHH--HHHHHHHHhcC---CCCCEEEEEcccCCC
Confidence 45667889999643211 1 111221 1346789999886531 22232322211 123447789999642
Q ss_pred cccChHHHHHHHHcCCcEEEecc
Q 029875 97 RQVKAKQVTFHRKKNLQYYEISA 119 (186)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~Sa 119 (186)
. .-....++...+.|+..++.
T Consensus 374 ~--~G~il~i~~~~~lPI~ylt~ 394 (432)
T PRK12724 374 F--LGSFLELADTYSKSFTYLSV 394 (432)
T ss_pred C--ccHHHHHHHHHCCCEEEEec
Confidence 2 22345666777877666554
No 476
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=44.19 E-value=47 Score=22.17 Aligned_cols=40 Identities=10% Similarity=0.072 Sum_probs=25.6
Q ss_pred cCcEEEEEEeCCChhhHHhHHHHHHHHHhhcC-CCCEEEEEeC
Q 029875 50 HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNK 91 (186)
Q Consensus 50 ~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~-~~p~ilv~nK 91 (186)
+++++.+ ..+....+..+..+++.+++..+ +.++++-|+-
T Consensus 50 ~pdvV~i--S~~~~~~~~~~~~~i~~l~~~~~~~~~i~vGG~~ 90 (119)
T cd02067 50 DADAIGL--SGLLTTHMTLMKEVIEELKEAGLDDIPVLVGGAI 90 (119)
T ss_pred CCCEEEE--eccccccHHHHHHHHHHHHHcCCCCCeEEEECCC
Confidence 4565554 44555567788889999888765 5555555543
No 477
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=42.79 E-value=43 Score=25.17 Aligned_cols=67 Identities=12% Similarity=-0.063 Sum_probs=40.8
Q ss_pred EEEEEEeCCCccc-cCCcccccccc--CcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCC
Q 029875 27 IRFYCWDTAGQEK-FGGLRDGYYIH--GQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK 95 (186)
Q Consensus 27 ~~l~l~Dt~G~~~-~~~~~~~~~~~--ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~ 95 (186)
+.+.++|||.... ...+....+.+ ++.+++|..... .+.......++.+.+.. -...-+|.|+....
T Consensus 114 yD~IIiD~pp~~~~~~~l~~~~l~~~~~~~vllV~~p~~-~s~~~~~~~l~~l~~~~-~~~~glVlN~~~~~ 183 (217)
T cd02035 114 YDVIVFDTAPTGHTLRLLVRELLTDPERTSFRLVTLPEK-LPLYETERAITELALYG-IPVDAVVVNRVLPA 183 (217)
T ss_pred CCEEEECCCCchHHHHHHHHHHccCCCceEEEEEeCCCc-cHHHHHHHHHHHHHHCC-CCCCEEEEeCCcCc
Confidence 7788999975422 12222233333 588999998874 46666666666666542 12345788998754
No 478
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.09 E-value=49 Score=27.92 Aligned_cols=64 Identities=14% Similarity=0.052 Sum_probs=0.0
Q ss_pred eEEEEEEEeCCCccccCCccccccc------cCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCC
Q 029875 25 GKIRFYCWDTAGQEKFGGLRDGYYI------HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVD 93 (186)
Q Consensus 25 ~~~~l~l~Dt~G~~~~~~~~~~~~~------~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~D 93 (186)
.++.+.|.||+|.-.-..-.-..+. +-|-+|+|.|++-..+-+.....++..-.. --++.||.|
T Consensus 182 e~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa~aFk~~vdv-----g~vIlTKlD 251 (483)
T KOG0780|consen 182 ENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQARAFKETVDV-----GAVILTKLD 251 (483)
T ss_pred cCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHHHHHHHHhhcc-----ceEEEEecc
No 479
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=41.85 E-value=1.1e+02 Score=23.86 Aligned_cols=66 Identities=14% Similarity=0.138 Sum_probs=36.3
Q ss_pred EEEEEEEeCCCccccCCcccccc-ccCcEEEEEEeCCChhhHHhHHHHHHHHHhh--cCCCCEE-EEEeCC
Q 029875 26 KIRFYCWDTAGQEKFGGLRDGYY-IHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIV-LCGNKV 92 (186)
Q Consensus 26 ~~~l~l~Dt~G~~~~~~~~~~~~-~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~--~~~~p~i-lv~nK~ 92 (186)
.+-+.|+||.|.--...+..... .-||.+|+++... ..++..+...++.+.+. ..+.+++ +|.|+.
T Consensus 118 ~yD~iliD~~~~~~~~al~~~~~~~aad~viIp~~p~-~~sl~g~~~l~~~i~~~~~~~~l~~~Giv~n~~ 187 (275)
T PRK13233 118 DLDFVFFDVLGDVVCGGFAMPIRDGKAQEVYIVASGE-MMAIYAANNICKGLVKYAEQSGVRLGGIICNSR 187 (275)
T ss_pred CCCEEEEecCCceeeccccccchhccCceEEEecccc-HHHHHHHHHHHHHHHHHHhcCCCceeEEEeeCC
Confidence 46778889966322111110000 1589999998775 34665555554444322 2455554 778864
No 480
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=41.62 E-value=21 Score=28.14 Aligned_cols=26 Identities=15% Similarity=-0.061 Sum_probs=22.9
Q ss_pred CcEEEeccCCCCCchHHHHHHHHHHh
Q 029875 112 LQYYEISAKSNYNFEKPFLYLARKLA 137 (186)
Q Consensus 112 ~~~~~~Sa~~~~gi~~l~~~l~~~i~ 137 (186)
+|++..||.++.|+..+++.+...+.
T Consensus 243 ~PV~~gSa~~~~Gi~~lld~i~~~~p 268 (270)
T cd01886 243 VPVLCGSAFKNKGVQPLLDAVVDYLP 268 (270)
T ss_pred EEEEeCcCCCCcCHHHHHHHHHHhcC
Confidence 47888999999999999999987763
No 481
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=41.50 E-value=68 Score=26.89 Aligned_cols=67 Identities=9% Similarity=0.005 Sum_probs=40.7
Q ss_pred EEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHH-------HHHhhcCCC--CE-EEEEeCCCCC
Q 029875 26 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHR-------DLCRVCENI--PI-VLCGNKVDVK 95 (186)
Q Consensus 26 ~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~-------~~~~~~~~~--p~-ilv~nK~Dl~ 95 (186)
.+.+.|+|||+...+ +....+.-||.+|+.+.++.. ++..+...+. .+.....+. .+ -++.|+.|-.
T Consensus 251 ~yD~IiIDtpP~l~~--~t~~al~aAd~viiPv~p~~~-~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~il~t~~~~~ 327 (405)
T PRK13869 251 DYDVVVIDCPPQLGF--LTLSGLCAATSMVITVHPQML-DIASMSQFLLMTRDLLGVVKEAGGNLQYDFIRYLLTRYEPQ 327 (405)
T ss_pred cCCEEEEECCCchhH--HHHHHHHHcCEEEEecCCcHH-HHHHHHHHHHHHHHHHHHHHHhCCCCCcceeEEEEEeECCC
Confidence 577889999887654 344566679999999877543 4444443332 222222222 23 3789999854
No 482
>cd01028 TOPRIM_TopoIA TOPRIM_TopoIA: topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain of the type found in the type IA family of DNA topoisomerases (TopoIA). This subgroup contains proteins similar to the Type I DNA topoisomerases: E. coli topisomerases I and III, eukaryotic topoisomerase III and, ATP-dependent reverse gyrase found in archaea and thermophilic bacteria. Type IA DNA topoisomerases remove (relax) negative supercoils in the DNA. These enzymes cleave one strand of the DNA duplex, covalently link to the 5' phosphoryl end of the DNA break and allow the other strand of the duplex to pass through the gap. Reverse gyrase is also able to insert positive supercoils in the presence of ATP and negative supercoils in the presence of AMPPNP. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). For topoisomerases the conserved glutamate is believed to act as a general b
Probab=41.49 E-value=28 Score=24.41 Aligned_cols=59 Identities=8% Similarity=0.070 Sum_probs=39.2
Q ss_pred HHHHHhhcCCCCEEEEEeCCCCCCcccChHHHHHHHH--cCCcEEEeccCCCCCchHHHHH
Q 029875 73 HRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRK--KNLQYYEISAKSNYNFEKPFLY 131 (186)
Q Consensus 73 ~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~gi~~l~~~ 131 (186)
++.+.+...+.-.|++++-.|..+..+-.+..+.+.. ..+.-+.+|+.|..+|.+.|..
T Consensus 81 ~~~ik~l~~~~d~iiiAtD~DrEGE~I~~~i~~~~~~~~~~v~R~~fsslT~~~I~~A~~n 141 (142)
T cd01028 81 LKALKKLAKKADEIVLATDPDREGELIAWEILEVLKCDNKPVKRAWFSEITPKAIREAFKN 141 (142)
T ss_pred HHHHHHHHhcCCEEEEcCCCCcchHHHHHHHHHHhCCCCCCeEEEEEccCCHHHHHHHHhC
Confidence 3344444334568899999997765555555555543 2345788999999888888764
No 483
>PHA02519 plasmid partition protein SopA; Reviewed
Probab=41.25 E-value=92 Score=25.98 Aligned_cols=67 Identities=10% Similarity=-0.013 Sum_probs=39.6
Q ss_pred EEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHH---Hhh----cCCCCEEEEEeCCCCC
Q 029875 26 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL---CRV----CENIPIVLCGNKVDVK 95 (186)
Q Consensus 26 ~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~---~~~----~~~~p~ilv~nK~Dl~ 95 (186)
.+-+.|+|||+...+ +....+.-||.+|+.+.+.- .++..+...+..+ ... ..+..+-++.|+.|..
T Consensus 234 ~YD~IlID~pPslg~--lt~nAL~AAd~vliPv~~~~-~s~~s~~~~~~~i~~~~~~~~~~~~~~~l~il~t~~~~~ 307 (387)
T PHA02519 234 NYDIIVIDSAPNLGT--GTINVVCAADVIVVATPAEL-FDYVSVLQFFTMLLDLLATVDLGGFEPVVRLLLTKYSLT 307 (387)
T ss_pred cCCEEEEECCCCccH--HHHHHHHHhCEEEEecCCcH-HHHHHHHHHHHHHHHHHHHHHhcccCCCeEEEEeeECCC
Confidence 577889999887654 34445666888888886643 3444333322222 211 1133455788999854
No 484
>KOG3022 consensus Predicted ATPase, nucleotide-binding [Cell cycle control, cell division, chromosome partitioning]
Probab=41.15 E-value=76 Score=25.40 Aligned_cols=89 Identities=13% Similarity=0.138 Sum_probs=49.3
Q ss_pred eEEEEEEEeC-CCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEE-EEEeCCCCC----C--
Q 029875 25 GKIRFYCWDT-AGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIV-LCGNKVDVK----N-- 96 (186)
Q Consensus 25 ~~~~l~l~Dt-~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~i-lv~nK~Dl~----~-- 96 (186)
....+-++|| ||...-.-..-.+++.++++|+|--... -++.++++-+.-..+ .++|++ +|-|-+--. .
T Consensus 155 g~lDyLviDtPPGtsDehls~~~~~~~~~gAviVTTPQ~-vAl~Dv~K~i~fc~K--~~I~ilGvVENMs~f~Cp~C~~~ 231 (300)
T KOG3022|consen 155 GELDYLVIDTPPGTSDEHLSLVQFLRESDGAVIVTTPQE-VALQDVRKEIDFCRK--AGIPILGVVENMSGFVCPKCGHS 231 (300)
T ss_pred CCcCEEEEeCCCCCChhhhheeecccccCceEEEeCchh-hhhHHHHhhhhhhhh--cCCceEEEEeccccccCCCCCCc
Confidence 3456667899 5654444445556666688777765443 355555554443333 378887 555543221 1
Q ss_pred cccCh--HHHHHHHHcCCcEEE
Q 029875 97 RQVKA--KQVTFHRKKNLQYYE 116 (186)
Q Consensus 97 ~~~~~--~~~~~~~~~~~~~~~ 116 (186)
..+.. -..+++.+++++++.
T Consensus 232 ~~iF~~gGg~~l~~~~glp~Lg 253 (300)
T KOG3022|consen 232 TNIFGSGGGERLAEELGLPLLG 253 (300)
T ss_pred ceeccCccHHHHHHHcCCCeEe
Confidence 11111 135778888877654
No 485
>cd07379 MPP_239FB Homo sapiens 239FB and related proteins, metallophosphatase domain. 239FB (Fetal brain protein 239) is thought to play a role in central nervous system development, but its specific role in unknown. 239FB is expressed predominantly in human fetal brain from a gene located in the chromosome 11p13 region associated with the mental retardation component of the WAGR (Wilms tumor, Aniridia, Genitourinary anomalies, Mental retardation) syndrome. Orthologous brp-like (brain protein 239-like) proteins have been identified in the invertebrate amphioxus group and in vertebrates. 239FB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzyme
Probab=41.08 E-value=79 Score=21.53 Aligned_cols=57 Identities=25% Similarity=0.219 Sum_probs=30.3
Q ss_pred EEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCC-EEEEEeCCCC
Q 029875 31 CWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDV 94 (186)
Q Consensus 31 l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p-~ilv~nK~Dl 94 (186)
+=|+-|... ......+|.+|++-|..+.........+.+.+.+. ...+ +++.|| +|.
T Consensus 5 isD~H~~~~-----~~~~~~~D~vi~~GD~~~~~~~~~~~~~~~~l~~~-~~~~~~~v~GN-HD~ 62 (135)
T cd07379 5 ISDTHSRHR-----TISIPDGDVLIHAGDLTERGTLEELQKFLDWLKSL-PHPHKIVIAGN-HDL 62 (135)
T ss_pred EeCCCCCCC-----cCcCCCCCEEEECCCCCCCCCHHHHHHHHHHHHhC-CCCeEEEEECC-CCC
Confidence 447755433 11335799999999987754433333333333322 1223 456677 553
No 486
>PRK13556 azoreductase; Provisional
Probab=40.00 E-value=48 Score=24.79 Aligned_cols=33 Identities=12% Similarity=0.115 Sum_probs=24.1
Q ss_pred ccccCcEEEEEEeCCChhhHHhHHHHHHHHHhh
Q 029875 47 YYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV 79 (186)
Q Consensus 47 ~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~ 79 (186)
.+..||++||++...+..=--.++.|+..+...
T Consensus 86 ~l~~AD~iVi~~P~yn~~~Pa~LK~~iD~v~~~ 118 (208)
T PRK13556 86 QFLEADKVVFAFPLWNFTIPAVLHTYIDYLNRA 118 (208)
T ss_pred HHHHCCEEEEeccccccCCcHHHHHHHHHHhcC
Confidence 466899999999987754223467888887753
No 487
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=39.92 E-value=46 Score=27.56 Aligned_cols=68 Identities=7% Similarity=-0.045 Sum_probs=38.7
Q ss_pred EEEEEEEeCCCccccCCccccccccCcEEEEEEeCCCh--hhHHhHHH----HHHHHHhhcC--CC-CEEEEEeCCCCC
Q 029875 26 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTAR--LTYKNVPT----WHRDLCRVCE--NI-PIVLCGNKVDVK 95 (186)
Q Consensus 26 ~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~--~s~~~i~~----~~~~~~~~~~--~~-p~ilv~nK~Dl~ 95 (186)
.+.+.|+|||+.... +....+.-||.+|+.+.++.. .+...+.. .+..+..... +. .+-++.|+.+..
T Consensus 234 ~yD~IiiD~pp~~~~--~~~~al~aad~viipv~p~~~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~ 310 (387)
T TIGR03453 234 DYDVVVIDCPPQLGF--LTLSALCAATGVLITVHPQMLDVMSMSQFLLMTGDLLGVVREAGGNLSYDFMRYLVTRYEPN 310 (387)
T ss_pred cCCEEEEeCCccHhH--HHHHHHHHcCeeEEcCCCchhhHHHHHHHHHHHHHHHHHHHHhcCCCCCceeEEEEeeECCC
Confidence 577889999876543 344566679999999877542 22222222 2223332211 12 234788998853
No 488
>PRK00090 bioD dithiobiotin synthetase; Reviewed
Probab=39.83 E-value=1.6e+02 Score=21.98 Aligned_cols=88 Identities=10% Similarity=0.039 Sum_probs=42.3
Q ss_pred EEEEEEEeCCCccccCCccccccccCcE-------EEEEEeCCChhhHHhHHHHHHHHHhhcCCCCE-EEEEeCCCCC-C
Q 029875 26 KIRFYCWDTAGQEKFGGLRDGYYIHGQC-------AIIMFDVTARLTYKNVPTWHRDLCRVCENIPI-VLCGNKVDVK-N 96 (186)
Q Consensus 26 ~~~l~l~Dt~G~~~~~~~~~~~~~~ad~-------vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~-ilv~nK~Dl~-~ 96 (186)
.+.+.+.|++|... ..+... +..+|. +|+|.+..-. ++..+...++.+... +.++ -+|.|+++-. .
T Consensus 103 ~~D~viIEg~gg~~-~~~~~~-~~~adl~~~l~~pvilV~~~~~~-~i~~~~~~i~~l~~~--~~~i~gvIlN~~~~~~~ 177 (222)
T PRK00090 103 QYDLVLVEGAGGLL-VPLTED-LTLADLAKQLQLPVILVVGVKLG-CINHTLLTLEAIRAR--GLPLAGWVANGIPPEPG 177 (222)
T ss_pred hCCEEEEECCCcee-ccCCCC-CcHHHHHHHhCCCEEEEECCCCc-HHHHHHHHHHHHHHC--CCCeEEEEEccCCCcch
Confidence 45666789887432 122222 223333 6677766443 454443434433332 4444 4677888743 1
Q ss_pred cccChHHHHHHHHcCCcEEEec
Q 029875 97 RQVKAKQVTFHRKKNLQYYEIS 118 (186)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~S 118 (186)
.........+....+++++.+-
T Consensus 178 ~~~~~~~~~l~~~~gi~vlg~i 199 (222)
T PRK00090 178 LRHAENLATLERLLPAPLLGEL 199 (222)
T ss_pred hHHHHHHHHHHHHcCCCeEEec
Confidence 2111222344455566666443
No 489
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=39.77 E-value=1.4e+02 Score=25.77 Aligned_cols=90 Identities=9% Similarity=-0.034 Sum_probs=46.3
Q ss_pred EEEEEEeCCCccccCCc---ccccccc---CcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCcccC
Q 029875 27 IRFYCWDTAGQEKFGGL---RDGYYIH---GQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK 100 (186)
Q Consensus 27 ~~l~l~Dt~G~~~~~~~---~~~~~~~---ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~ 100 (186)
..+.++||+|....... ....+.. ..-.+||+|++-.. ..+......+. ....--+|.||.|-.. ..
T Consensus 335 ~d~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~--~~l~~i~~~f~---~~~~~g~IlTKlDet~--~~ 407 (484)
T PRK06995 335 KHIVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHG--DTLNEVVQAYR---GPGLAGCILTKLDEAA--SL 407 (484)
T ss_pred CCeEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcH--HHHHHHHHHhc---cCCCCEEEEeCCCCcc--cc
Confidence 35667899994432210 0011111 12278888987532 22222222222 2234456789999542 22
Q ss_pred hHHHHHHHHcCCcEEEeccCCCCCc
Q 029875 101 AKQVTFHRKKNLQYYEISAKSNYNF 125 (186)
Q Consensus 101 ~~~~~~~~~~~~~~~~~Sa~~~~gi 125 (186)
-....+....++++.+++. |.+|
T Consensus 408 G~~l~i~~~~~lPI~yvt~--GQ~V 430 (484)
T PRK06995 408 GGALDVVIRYKLPLHYVSN--GQRV 430 (484)
T ss_pred hHHHHHHHHHCCCeEEEec--CCCC
Confidence 3345667777888766653 5555
No 490
>PF05014 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransferase; InterPro: IPR007710 Nucleoside 2-deoxyribosyltransferase (2.4.2.6 from EC) catalyses the cleavage of the glycosidic bonds of 2-deoxyribonucleosides. Nucleoside 2-deoxyribosyltransferases can be divided into two groups based on their substrate specificity: class I enzymes are specific for the transfer of deoxyribose between two purines, while class II enzymes will transfer the deoxyribose between either purines or pyrimidines. The structure of the class I [] and class II [] enzymes are very similar. In class I enzymes, the purine base shields the active site from solvent, which the smaller pyrimidine base cannot do, while in class II enzymes the active site is shielded by a loop (residues 48-62). Both classes of enzymes are found in various Lactobacillus species and participate in nucleoside recycling in these microorganisms. This entry represents both classes of enzymes.; GO: 0050144 nucleoside deoxyribosyltransferase activity, 0070694 deoxyribonucleoside 5'-monophosphate N-glycosidase activity, 0009159 deoxyribonucleoside monophosphate catabolic process; PDB: 1S2L_A 1S2D_C 1S2I_A 1S3F_B 1S2G_C 2A0K_A 2F67_A 2F64_B 2F62_A 2F2T_A ....
Probab=39.39 E-value=69 Score=21.25 Aligned_cols=43 Identities=12% Similarity=-0.030 Sum_probs=26.8
Q ss_pred cccccCcEEEEEEeCCC--hhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCC
Q 029875 46 GYYIHGQCAIIMFDVTA--RLTYKNVPTWHRDLCRVCENIPIVLCGNKVDV 94 (186)
Q Consensus 46 ~~~~~ad~vilv~D~~~--~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl 94 (186)
..++.||++|.++|... ..+.-++ -|. ...++|++++.+....
T Consensus 57 ~~i~~~D~via~l~~~~~d~Gt~~El-G~A-----~algkpv~~~~~d~~~ 101 (113)
T PF05014_consen 57 EGIRECDIVIANLDGFRPDSGTAFEL-GYA-----YALGKPVILLTEDDRP 101 (113)
T ss_dssp HHHHHSSEEEEEECSSS--HHHHHHH-HHH-----HHTTSEEEEEECCCCT
T ss_pred HHHHHCCEEEEECCCCCCCCcHHHHH-HHH-----HHCCCEEEEEEcCCcc
Confidence 34678999999999844 2222222 111 1147899998887764
No 491
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=39.28 E-value=59 Score=24.04 Aligned_cols=57 Identities=9% Similarity=0.181 Sum_probs=31.8
Q ss_pred eCCCccccCCcccccccc--CcEEEEEEeCC-ChhhHH-hHHHHHHHHHhhcCCCCEEEEE
Q 029875 33 DTAGQEKFGGLRDGYYIH--GQCAIIMFDVT-ARLTYK-NVPTWHRDLCRVCENIPIVLCG 89 (186)
Q Consensus 33 Dt~G~~~~~~~~~~~~~~--ad~vilv~D~~-~~~s~~-~i~~~~~~~~~~~~~~p~ilv~ 89 (186)
-.+|.-........++.. ++++++-+-++ +...|. .+...+..++..++++|+++|-
T Consensus 40 GfsG~~~le~~~a~~ia~~~a~~~~ld~~~N~~~~~~~~~~~~fv~~iR~~hP~tPIllv~ 100 (178)
T PF14606_consen 40 GFSGNGKLEPEVADLIAEIDADLIVLDCGPNMSPEEFRERLDGFVKTIREAHPDTPILLVS 100 (178)
T ss_dssp E-TCCCS--HHHHHHHHHS--SEEEEEESHHCCTTTHHHHHHHHHHHHHTT-SSS-EEEEE
T ss_pred eecCccccCHHHHHHHhcCCCCEEEEEeecCCCHHHHHHHHHHHHHHHHHhCCCCCEEEEe
Confidence 456666655555555554 45555554443 333454 3567788888888999999986
No 492
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=38.58 E-value=38 Score=28.11 Aligned_cols=38 Identities=18% Similarity=0.085 Sum_probs=27.4
Q ss_pred eEEEEEEEeCCCcccc----CCccccc---cccCcEEEEEEeCCC
Q 029875 25 GKIRFYCWDTAGQEKF----GGLRDGY---YIHGQCAIIMFDVTA 62 (186)
Q Consensus 25 ~~~~l~l~Dt~G~~~~----~~~~~~~---~~~ad~vilv~D~~~ 62 (186)
....++|+|.+|.-.- ..+...| ++.+|+++.|+|.+.
T Consensus 65 ~~~~ve~vDIAGLV~GAs~GeGLGNkFL~~IRevdaI~hVVr~f~ 109 (372)
T COG0012 65 RPAPVEFVDIAGLVKGASKGEGLGNKFLDNIREVDAIIHVVRCFG 109 (372)
T ss_pred EeeeeEEEEecccCCCcccCCCcchHHHHhhhhcCeEEEEEEecC
Confidence 4578899999985432 3344444 568999999999863
No 493
>cd01844 SGNH_hydrolase_like_6 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=38.02 E-value=1.2e+02 Score=21.58 Aligned_cols=43 Identities=14% Similarity=0.108 Sum_probs=30.5
Q ss_pred cCcEEEEEEeCCChhh----HHhHHHHHHHHHhhcCCCCEEEEEeCC
Q 029875 50 HGQCAIIMFDVTARLT----YKNVPTWHRDLCRVCENIPIVLCGNKV 92 (186)
Q Consensus 50 ~ad~vilv~D~~~~~s----~~~i~~~~~~~~~~~~~~p~ilv~nK~ 92 (186)
..+.|++++-.+|..+ .+.+...++.+++..++.|++++....
T Consensus 57 ~pd~vii~~G~ND~~~~~~~~~~~~~~i~~i~~~~p~~~iil~~~~~ 103 (177)
T cd01844 57 PADLYIIDCGPNIVGAEAMVRERLGPLVKGLRETHPDTPILLVSPRY 103 (177)
T ss_pred CCCEEEEEeccCCCccHHHHHHHHHHHHHHHHHHCcCCCEEEEecCC
Confidence 6799999887776432 234566777777777788988877543
No 494
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=37.40 E-value=68 Score=26.30 Aligned_cols=93 Identities=12% Similarity=0.109 Sum_probs=49.4
Q ss_pred eEEEEEEEeCCCccccCC-c------cccccccC-----cEEEEEEeCCChh-hHHhHHHHHHHHHhhcCCCCE-EEEEe
Q 029875 25 GKIRFYCWDTAGQEKFGG-L------RDGYYIHG-----QCAIIMFDVTARL-TYKNVPTWHRDLCRVCENIPI-VLCGN 90 (186)
Q Consensus 25 ~~~~l~l~Dt~G~~~~~~-~------~~~~~~~a-----d~vilv~D~~~~~-s~~~i~~~~~~~~~~~~~~p~-ilv~n 90 (186)
+.+.+-|.||+|.-.... + ....++.. +=++++.|++-.+ ++.+.+.+ ++ . .++ =++.|
T Consensus 220 r~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QAk~F-~e---a---v~l~GiIlT 292 (340)
T COG0552 220 RGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQAKIF-NE---A---VGLDGIILT 292 (340)
T ss_pred cCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHHHHHH-HH---h---cCCceEEEE
Confidence 356677889999543211 1 11122222 4478888997654 44443222 22 1 222 26789
Q ss_pred CCCCCCcccChHHHHHHHHcCCcEEEeccCCCCCchHH
Q 029875 91 KVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKP 128 (186)
Q Consensus 91 K~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 128 (186)
|+|-..+. --....+..+++|+..+.. |++++++
T Consensus 293 KlDgtAKG--G~il~I~~~l~~PI~fiGv--GE~~~DL 326 (340)
T COG0552 293 KLDGTAKG--GIILSIAYELGIPIKFIGV--GEGYDDL 326 (340)
T ss_pred ecccCCCc--ceeeeHHHHhCCCEEEEeC--CCChhhc
Confidence 99943211 1123566778888777754 4455554
No 495
>cd01840 SGNH_hydrolase_yrhL_like yrhL-like subfamily of SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Most members of this sub-family appear to co-occur with N-terminal acyltransferase domains. Might be involved in lipid metabolism.
Probab=37.33 E-value=1.2e+02 Score=21.08 Aligned_cols=65 Identities=14% Similarity=0.101 Sum_probs=37.4
Q ss_pred ccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCC-cccChHHHHHHHHc-CCcEEE
Q 029875 49 IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVKAKQVTFHRKK-NLQYYE 116 (186)
Q Consensus 49 ~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~-~~~~~~ 116 (186)
+..+.+++++-.++....+++...++.+. ++.+++++........ ........++++++ ++.++.
T Consensus 49 ~~~d~vvi~lGtNd~~~~~nl~~ii~~~~---~~~~ivlv~~~~~~~~~~~~n~~~~~~a~~~~~v~~id 115 (150)
T cd01840 49 KLRKTVVIGLGTNGPFTKDQLDELLDALG---PDRQVYLVNPHVPRPWEPDVNAYLLDAAKKYKNVTIID 115 (150)
T ss_pred CCCCeEEEEecCCCCCCHHHHHHHHHHcC---CCCEEEEEECCCCcchHHHHHHHHHHHHHHCCCcEEec
Confidence 35799999998888755555555554442 3577888777632111 11112234566666 555554
No 496
>PRK06242 flavodoxin; Provisional
Probab=37.16 E-value=1.4e+02 Score=20.61 Aligned_cols=68 Identities=6% Similarity=-0.170 Sum_probs=39.7
Q ss_pred ccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCcccChHHHHHHHHcCCcEEE
Q 029875 47 YYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE 116 (186)
Q Consensus 47 ~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 116 (186)
.+.++|++++...+....-...+..|+..+... .+++++++++--- ............+...++.++.
T Consensus 40 ~~~~~d~ii~g~pvy~~~~~~~~~~fl~~~~~~-~~k~~~~f~t~g~-~~~~~~~~l~~~l~~~g~~~~~ 107 (150)
T PRK06242 40 DLSEYDLIGFGSGIYFGKFHKSLLKLIEKLPPV-SGKKAFIFSTSGL-PFLKYHKALKKKLKEKGFEIVG 107 (150)
T ss_pred cHhHCCEEEEeCchhcCCcCHHHHHHHHhhhhh-cCCeEEEEECCCC-CcchHHHHHHHHHHHCCCEEEE
Confidence 466889999988765433334456666655332 4788888888543 2211122334555666776653
No 497
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=36.98 E-value=2.1e+02 Score=22.66 Aligned_cols=67 Identities=12% Similarity=0.173 Sum_probs=37.6
Q ss_pred eEEEEEEEeCCCccccCCccccc-cccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc--CCCCE-EEEEeCC
Q 029875 25 GKIRFYCWDTAGQEKFGGLRDGY-YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPI-VLCGNKV 92 (186)
Q Consensus 25 ~~~~l~l~Dt~G~~~~~~~~~~~-~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~--~~~p~-ilv~nK~ 92 (186)
..+-+.|+||+|.--...+...+ ..-||.+|+++.... .|+..+...++.+.+.. ++..+ -++.|+.
T Consensus 118 ~~yD~IlID~~~~~~~nal~~~~~~~aAD~vIIPv~pe~-~Sl~gl~~l~~~i~~~~~~~~l~~~gIV~N~~ 188 (295)
T PRK13234 118 DDVDYVSYDVLGDVVCGGFAMPIRENKAQEIYIVMSGEM-MALYAANNIAKGILKYANSGGVRLGGLICNER 188 (295)
T ss_pred ccCCEEEEEcCCCceECCCccccccccCceEEEecCccH-HHHHHHHHHHHHHHHHhcCCCCeEEEEEecCC
Confidence 35777889996532211221111 137899999987754 46666655555555442 23433 3777843
No 498
>COG1512 Beta-propeller domains of methanol dehydrogenase type [General function prediction only]
Probab=36.66 E-value=2.2e+02 Score=22.66 Aligned_cols=94 Identities=15% Similarity=0.065 Sum_probs=55.1
Q ss_pred ccCcEEEEEEeCCChhhHHhHH-HHHHH--HHhhcCCCCEEEEEeCCCCCC---------cccChH-HHHHHHHcCCcEE
Q 029875 49 IHGQCAIIMFDVTARLTYKNVP-TWHRD--LCRVCENIPIVLCGNKVDVKN---------RQVKAK-QVTFHRKKNLQYY 115 (186)
Q Consensus 49 ~~ad~vilv~D~~~~~s~~~i~-~~~~~--~~~~~~~~p~ilv~nK~Dl~~---------~~~~~~-~~~~~~~~~~~~~ 115 (186)
.+++++|++++.++.++.+.-. +.++. +-+...+--+++++.|.|..- ...... ..+..+..=.|.|
T Consensus 62 t~~QiaVv~vpSt~g~~IE~ya~rlfd~W~lG~k~~~dGvLLlVa~~dr~~rIevGyGLEg~ltD~~a~~iIr~~i~P~f 141 (271)
T COG1512 62 TGAQIAVVTVPSTGGETIEQYATRLFDKWKLGDKAQDDGVLLLVAMNDRRVRIEVGYGLEGVLTDAQAGRIIRETIAPAF 141 (271)
T ss_pred cCCeEEEEEecCCCCCCHHHHHHHHHHhcCCCccccCCCEEEEEEcCCCeEEEEEecCcccccChHHHHHHHHhhhCccc
Confidence 3689999999999977766432 22222 221123556889999999432 122222 2244443334444
Q ss_pred EeccCCCCCchHHHHHHHHHHhCCCCcc
Q 029875 116 EISAKSNYNFEKPFLYLARKLAGDPNLH 143 (186)
Q Consensus 116 ~~Sa~~~~gi~~l~~~l~~~i~~~~~~~ 143 (186)
.--. -..||...++.+...+...+...
T Consensus 142 r~gn-y~~gi~~~id~l~~~l~g~~~~~ 168 (271)
T COG1512 142 RDGN-YAGGLEAGIDRLVALLAGEPLPS 168 (271)
T ss_pred ccCc-HHHHHHHHHHHHHHHHcCCCCCC
Confidence 3333 33478888888888887766544
No 499
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=36.60 E-value=1e+02 Score=18.80 Aligned_cols=36 Identities=17% Similarity=-0.047 Sum_probs=24.6
Q ss_pred EEEEEeCCCccccCCc-cccccccCcEEEEEEeCCCh
Q 029875 28 RFYCWDTAGQEKFGGL-RDGYYIHGQCAIIMFDVTAR 63 (186)
Q Consensus 28 ~l~l~Dt~G~~~~~~~-~~~~~~~ad~vilv~D~~~~ 63 (186)
.+.++|+++....... .......++.++++++....
T Consensus 35 d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~~~~~ 71 (99)
T cd01983 35 DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTTPEAL 71 (99)
T ss_pred CEEEEeCCCCccchhhhhhhhhhhCCEEEEecCCchh
Confidence 5677899876443221 24566789999999988764
No 500
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=35.24 E-value=2.3e+02 Score=23.20 Aligned_cols=37 Identities=14% Similarity=0.075 Sum_probs=21.9
Q ss_pred EEEEEEeCCCccccCCccccc----c---ccCcEEEEEEeCCCh
Q 029875 27 IRFYCWDTAGQEKFGGLRDGY----Y---IHGQCAIIMFDVTAR 63 (186)
Q Consensus 27 ~~l~l~Dt~G~~~~~~~~~~~----~---~~ad~vilv~D~~~~ 63 (186)
....++.|.|...-..+...+ + -.-+++|.|+|+.+-
T Consensus 93 ~d~IvIEtsG~a~P~~i~~~~~~~~l~~~~~l~~vvtvVDa~~~ 136 (341)
T TIGR02475 93 PDHILIETSGLALPKPLVQAFQWPEIRSRVTVDGVVTVVDGPAV 136 (341)
T ss_pred CCEEEEeCCCCCCHHHHHHHhcCccccceEEeeeEEEEEECchh
Confidence 445566888865433222221 1 146889999999753
Done!