Query 029875
Match_columns 186
No_of_seqs 136 out of 1576
Neff 9.3
Searched_HMMs 29240
Date Mon Mar 25 07:39:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029875.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029875hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3gj0_A GTP-binding nuclear pro 100.0 1.1E-31 3.7E-36 203.1 19.2 180 4-183 41-220 (221)
2 4dkx_A RAS-related protein RAB 100.0 6.1E-32 2.1E-36 204.7 14.3 139 2-140 37-178 (216)
3 3q3j_B RHO-related GTP-binding 99.9 3.1E-26 1.1E-30 172.7 15.4 138 3-141 52-206 (214)
4 2fu5_C RAS-related protein RAB 99.9 1.8E-26 6.1E-31 169.0 12.6 136 4-139 34-172 (183)
5 2hup_A RAS-related protein RAB 99.9 3E-26 1E-30 171.1 13.2 138 3-140 54-195 (201)
6 3tw8_B RAS-related protein RAB 99.9 3.6E-25 1.2E-29 161.2 17.4 137 3-139 34-172 (181)
7 3reg_A RHO-like small GTPase; 99.9 4.5E-25 1.5E-29 163.3 18.1 137 3-140 48-190 (194)
8 1x3s_A RAS-related protein RAB 99.9 2.8E-25 9.4E-30 164.0 16.9 139 3-141 40-181 (195)
9 2ew1_A RAS-related protein RAB 99.9 1.8E-25 6.2E-30 167.2 15.6 137 3-139 51-190 (201)
10 3t1o_A Gliding protein MGLA; G 99.9 6.9E-27 2.4E-31 172.7 7.7 135 5-139 51-193 (198)
11 1g16_A RAS-related protein SEC 99.9 2.1E-25 7.2E-30 160.9 15.3 137 3-139 28-166 (170)
12 1z2a_A RAS-related protein RAB 99.9 2.3E-25 7.8E-30 160.4 15.3 136 3-138 30-167 (168)
13 3t5g_A GTP-binding protein RHE 99.9 6E-25 2E-29 160.6 17.6 139 3-142 31-173 (181)
14 1z08_A RAS-related protein RAB 99.9 2.6E-25 8.8E-30 160.6 15.4 136 3-138 31-169 (170)
15 1wms_A RAB-9, RAB9, RAS-relate 99.9 5.5E-25 1.9E-29 160.0 17.2 137 3-139 32-175 (177)
16 2hxs_A RAB-26, RAS-related pro 99.9 1.4E-25 4.9E-30 163.2 13.7 137 4-140 32-175 (178)
17 2g6b_A RAS-related protein RAB 99.9 7.3E-25 2.5E-29 159.8 17.5 135 5-139 38-175 (180)
18 3tkl_A RAS-related protein RAB 99.9 6.5E-25 2.2E-29 162.2 17.2 138 3-140 41-181 (196)
19 2atx_A Small GTP binding prote 99.9 5.7E-25 1.9E-29 162.7 16.7 135 3-138 43-193 (194)
20 2bcg_Y Protein YP2, GTP-bindin 99.9 7.8E-25 2.7E-29 163.5 17.2 138 3-140 33-173 (206)
21 2a5j_A RAS-related protein RAB 99.9 3.9E-25 1.3E-29 163.4 15.3 136 3-138 46-184 (191)
22 2gf9_A RAS-related protein RAB 99.9 1.5E-24 5.1E-29 159.9 18.0 136 3-138 47-185 (189)
23 1m7b_A RND3/RHOE small GTP-bin 99.9 5.3E-25 1.8E-29 161.8 15.3 135 3-138 32-183 (184)
24 3kkq_A RAS-related protein M-R 99.9 1.1E-24 3.9E-29 159.4 16.9 135 3-138 43-182 (183)
25 1r2q_A RAS-related protein RAB 99.9 7.4E-25 2.5E-29 157.9 15.6 135 3-137 31-168 (170)
26 1z0f_A RAB14, member RAS oncog 99.9 7.4E-25 2.5E-29 159.3 15.5 136 3-138 40-178 (179)
27 1ek0_A Protein (GTP-binding pr 99.9 4.9E-25 1.7E-29 158.8 14.4 135 3-137 28-168 (170)
28 3c5c_A RAS-like protein 12; GD 99.9 8.9E-25 3E-29 161.2 16.0 134 3-138 46-186 (187)
29 2efe_B Small GTP-binding prote 99.9 7.5E-25 2.6E-29 159.8 15.1 137 3-139 37-176 (181)
30 1zbd_A Rabphilin-3A; G protein 99.9 1E-24 3.5E-29 162.4 16.1 137 3-139 33-172 (203)
31 2q3h_A RAS homolog gene family 99.9 1.5E-24 5.1E-29 161.3 16.7 136 3-139 45-196 (201)
32 1vg8_A RAS-related protein RAB 99.9 1.7E-24 5.7E-29 161.4 16.8 137 3-139 33-176 (207)
33 2j0v_A RAC-like GTP-binding pr 99.9 5.4E-25 1.9E-29 165.0 14.2 137 3-140 34-182 (212)
34 3cbq_A GTP-binding protein REM 99.9 1.1E-24 3.8E-29 162.0 15.7 136 5-140 50-190 (195)
35 3cpj_B GTP-binding protein YPT 99.9 9E-25 3.1E-29 165.4 15.4 139 3-141 38-179 (223)
36 3cph_A RAS-related protein SEC 99.9 2.1E-24 7.2E-29 161.5 16.7 137 3-139 45-183 (213)
37 2bme_A RAB4A, RAS-related prot 99.9 1.4E-24 4.9E-29 159.1 15.5 137 3-139 35-174 (186)
38 1gwn_A RHO-related GTP-binding 99.9 9.5E-25 3.2E-29 163.7 14.7 135 3-138 53-204 (205)
39 2fg5_A RAB-22B, RAS-related pr 99.9 9.8E-25 3.4E-29 161.5 14.5 137 3-139 48-187 (192)
40 2p5s_A RAS and EF-hand domain 99.9 9.4E-25 3.2E-29 162.4 14.4 136 3-138 53-197 (199)
41 1z0j_A RAB-22, RAS-related pro 99.9 2.5E-24 8.6E-29 155.2 16.0 135 3-137 31-168 (170)
42 1mh1_A RAC1; GTP-binding, GTPa 99.9 3E-24 1E-28 157.1 16.5 137 3-140 30-182 (186)
43 2oil_A CATX-8, RAS-related pro 99.9 2.1E-24 7.2E-29 159.5 15.8 136 3-138 50-188 (193)
44 2o52_A RAS-related protein RAB 99.9 1.1E-24 3.8E-29 162.3 14.3 137 3-139 50-189 (200)
45 2il1_A RAB12; G-protein, GDP, 99.9 9.8E-25 3.3E-29 161.6 13.2 136 3-138 51-190 (192)
46 2y8e_A RAB-protein 6, GH09086P 99.9 2E-24 6.8E-29 157.0 14.6 136 3-138 39-177 (179)
47 2yc2_C IFT27, small RAB-relate 99.9 4.9E-25 1.7E-29 164.2 11.6 136 3-138 47-192 (208)
48 2gco_A H9, RHO-related GTP-bin 99.9 4.4E-24 1.5E-28 159.1 16.4 135 3-138 50-200 (201)
49 1z06_A RAS-related protein RAB 99.9 1.6E-24 5.6E-29 159.7 13.8 136 3-138 45-188 (189)
50 2fn4_A P23, RAS-related protei 99.9 3.5E-24 1.2E-28 156.0 15.3 137 3-140 34-174 (181)
51 3dz8_A RAS-related protein RAB 99.9 1.8E-25 6.1E-30 165.2 8.4 137 3-139 48-187 (191)
52 3q85_A GTP-binding protein REM 99.9 3.4E-24 1.2E-28 154.6 15.0 135 4-138 28-167 (169)
53 3clv_A RAB5 protein, putative; 99.9 5.4E-24 1.9E-28 157.5 16.3 135 3-138 32-204 (208)
54 3bc1_A RAS-related protein RAB 99.9 3.5E-24 1.2E-28 157.6 15.0 137 3-139 36-186 (195)
55 3oes_A GTPase rhebl1; small GT 99.9 2.3E-24 7.8E-29 160.6 13.8 138 3-141 49-190 (201)
56 2j1l_A RHO-related GTP-binding 99.9 3.5E-24 1.2E-28 161.3 14.9 137 3-140 59-211 (214)
57 1c1y_A RAS-related protein RAP 99.9 6.7E-24 2.3E-28 152.6 15.4 134 3-137 28-166 (167)
58 4djt_A GTP-binding nuclear pro 99.9 9.2E-24 3.2E-28 158.9 16.7 148 3-150 36-187 (218)
59 2fv8_A H6, RHO-related GTP-bin 99.9 1.1E-23 3.6E-28 157.7 16.8 136 3-139 50-201 (207)
60 3ihw_A Centg3; RAS, centaurin, 99.9 7.6E-24 2.6E-28 156.0 15.1 130 3-139 45-181 (184)
61 1u8z_A RAS-related protein RAL 99.9 6.9E-24 2.4E-28 152.3 14.6 135 3-138 29-167 (168)
62 1ky3_A GTP-binding protein YPT 99.9 4.2E-24 1.4E-28 155.7 13.4 136 3-138 33-178 (182)
63 3bwd_D RAC-like GTP-binding pr 99.9 7.6E-25 2.6E-29 159.9 9.5 135 3-138 33-181 (182)
64 3q72_A GTP-binding protein RAD 99.9 1.3E-23 4.6E-28 151.1 15.5 132 6-138 29-164 (166)
65 2iwr_A Centaurin gamma 1; ANK 99.9 1.3E-23 4.5E-28 153.1 15.5 127 7-139 35-170 (178)
66 2g3y_A GTP-binding protein GEM 99.9 4.4E-24 1.5E-28 161.0 13.1 131 8-138 68-203 (211)
67 4dsu_A GTPase KRAS, isoform 2B 99.9 2.9E-23 9.8E-28 152.2 17.0 136 3-139 29-167 (189)
68 2f7s_A C25KG, RAS-related prot 99.9 1.5E-24 5E-29 163.2 10.0 137 3-139 50-200 (217)
69 2nzj_A GTP-binding protein REM 99.9 1.3E-23 4.3E-28 152.3 14.6 132 7-138 32-169 (175)
70 2ce2_X GTPase HRAS; signaling 99.9 4.1E-23 1.4E-27 147.8 17.1 135 3-138 28-165 (166)
71 2bov_A RAla, RAS-related prote 99.9 1.8E-23 6.3E-28 155.5 15.3 136 3-139 39-178 (206)
72 3l0i_B RAS-related protein RAB 99.9 5E-25 1.7E-29 163.9 6.7 137 3-139 58-197 (199)
73 2a9k_A RAS-related protein RAL 99.9 1.5E-23 5E-28 153.4 14.4 135 3-138 43-181 (187)
74 1kao_A RAP2A; GTP-binding prot 99.9 1.4E-23 4.9E-28 150.5 13.3 134 3-137 28-165 (167)
75 2atv_A RERG, RAS-like estrogen 99.9 3E-23 1E-27 153.8 15.2 135 3-139 53-192 (196)
76 4gzl_A RAS-related C3 botulinu 99.9 1.8E-23 6.1E-28 156.3 13.9 133 3-136 55-203 (204)
77 3con_A GTPase NRAS; structural 99.9 1E-22 3.5E-27 149.9 17.6 136 3-139 46-184 (190)
78 4bas_A ADP-ribosylation factor 99.9 1.3E-23 4.4E-28 155.6 12.4 131 6-140 46-191 (199)
79 2gf0_A GTP-binding protein DI- 99.9 4.3E-23 1.5E-27 152.7 14.2 136 3-139 33-172 (199)
80 2cjw_A GTP-binding protein GEM 99.9 8.2E-23 2.8E-27 151.5 15.6 131 8-138 37-172 (192)
81 1f6b_A SAR1; gtpases, N-termin 99.9 1.9E-23 6.5E-28 155.5 11.5 127 6-136 52-197 (198)
82 1m2o_B GTP-binding protein SAR 99.9 5.9E-23 2E-27 151.9 13.2 126 6-135 50-189 (190)
83 2erx_A GTP-binding protein DI- 99.9 6.4E-23 2.2E-27 147.9 13.1 135 3-138 28-167 (172)
84 1ksh_A ARF-like protein 2; sma 99.9 6.4E-23 2.2E-27 150.5 12.9 132 4-139 43-181 (186)
85 2zej_A Dardarin, leucine-rich 99.9 7.1E-24 2.4E-28 155.9 7.4 137 4-140 30-180 (184)
86 2h57_A ADP-ribosylation factor 99.9 1.3E-22 4.3E-27 149.6 14.1 131 4-138 48-187 (190)
87 1upt_A ARL1, ADP-ribosylation 99.9 1.9E-22 6.4E-27 145.6 14.2 130 6-139 34-170 (171)
88 2wkq_A NPH1-1, RAS-related C3 99.9 2.8E-22 9.7E-27 159.4 16.3 136 3-139 180-331 (332)
89 1zj6_A ADP-ribosylation factor 99.9 3.7E-23 1.3E-27 152.1 10.4 131 6-140 43-180 (187)
90 1zd9_A ADP-ribosylation factor 99.9 6.2E-23 2.1E-27 151.3 10.8 132 3-138 47-185 (188)
91 1r8s_A ADP-ribosylation factor 99.9 5.7E-23 1.9E-27 147.5 9.7 129 6-138 27-162 (164)
92 1fzq_A ADP-ribosylation factor 99.9 5.1E-23 1.7E-27 151.0 9.4 129 6-138 43-178 (181)
93 2h17_A ADP-ribosylation factor 99.9 6.5E-23 2.2E-27 150.2 9.2 127 5-135 47-180 (181)
94 2b6h_A ADP-ribosylation factor 99.9 2.7E-22 9.1E-27 148.6 11.3 129 6-138 56-191 (192)
95 2x77_A ADP-ribosylation factor 99.9 4.2E-22 1.4E-26 146.6 11.5 130 6-139 49-185 (189)
96 3llu_A RAS-related GTP-binding 99.9 9.6E-23 3.3E-27 151.3 7.5 128 8-136 47-195 (196)
97 3th5_A RAS-related C3 botulinu 99.8 5.1E-24 1.7E-28 158.9 0.0 133 3-136 55-203 (204)
98 1moz_A ARL1, ADP-ribosylation 99.9 4.2E-22 1.4E-26 145.5 10.1 130 5-138 44-180 (183)
99 2f9l_A RAB11B, member RAS onco 99.9 1.1E-20 3.8E-25 140.4 16.3 137 3-139 30-169 (199)
100 3r7w_B Gtpase2, GTP-binding pr 99.9 4.9E-23 1.7E-27 163.7 3.5 127 6-138 30-174 (331)
101 1cip_A Protein (guanine nucleo 99.9 5.2E-22 1.8E-26 160.1 8.6 129 7-139 177-345 (353)
102 2xtz_A Guanine nucleotide-bind 99.9 3.9E-22 1.3E-26 160.8 6.5 120 19-138 171-345 (354)
103 3c5h_A Glucocorticoid receptor 99.9 2E-22 6.7E-27 156.0 4.4 134 4-137 57-254 (255)
104 1oix_A RAS-related protein RAB 99.9 4.1E-20 1.4E-24 136.7 16.4 134 3-136 54-190 (191)
105 1u0l_A Probable GTPase ENGC; p 99.8 3E-21 1E-25 152.7 9.7 123 5-135 45-170 (301)
106 1azs_C GS-alpha; complex (lyas 99.8 2.1E-21 7.1E-26 158.5 8.6 127 8-138 202-385 (402)
107 3o47_A ADP-ribosylation factor 99.8 1.5E-20 5E-25 150.5 11.6 129 7-139 193-328 (329)
108 3lvq_E ARF-GAP with SH3 domain 99.8 1.7E-20 5.9E-25 157.5 11.9 131 6-140 349-486 (497)
109 1zcb_A G alpha I/13; GTP-bindi 99.8 7.6E-21 2.6E-25 153.8 9.2 128 7-138 185-353 (362)
110 3ohm_A Guanine nucleotide-bind 99.8 4.7E-21 1.6E-25 152.7 7.1 130 7-140 151-320 (327)
111 3r7w_A Gtpase1, GTP-binding pr 99.8 3.7E-20 1.3E-24 146.8 11.0 129 5-137 33-180 (307)
112 2fh5_B SR-beta, signal recogni 99.8 1.1E-19 3.8E-24 136.1 11.1 129 4-135 33-213 (214)
113 2wji_A Ferrous iron transport 99.8 9.1E-20 3.1E-24 131.6 10.0 124 6-136 31-163 (165)
114 4fid_A G protein alpha subunit 99.8 7.6E-21 2.6E-25 152.1 4.2 128 7-138 145-328 (340)
115 2lkc_A Translation initiation 99.8 4.4E-19 1.5E-23 128.7 9.3 131 3-139 33-172 (178)
116 3dpu_A RAB family protein; roc 99.8 1.9E-19 6.6E-24 152.5 6.2 136 3-141 66-211 (535)
117 2wjg_A FEOB, ferrous iron tran 99.8 2E-18 6.7E-23 126.5 10.5 128 6-140 35-171 (188)
118 3iev_A GTP-binding protein ERA 99.8 3.2E-18 1.1E-22 135.7 10.6 133 26-160 58-204 (308)
119 2gj8_A MNME, tRNA modification 99.8 3.8E-19 1.3E-23 129.4 4.5 124 8-139 35-167 (172)
120 2dyk_A GTP-binding protein; GT 99.7 2.3E-18 7.7E-23 122.9 6.9 121 8-136 32-160 (161)
121 2qu8_A Putative nucleolar GTP- 99.7 1.2E-17 4.2E-22 126.5 10.8 114 26-139 75-206 (228)
122 2cxx_A Probable GTP-binding pr 99.7 1.4E-18 4.9E-23 127.3 4.3 130 4-140 27-186 (190)
123 1svi_A GTP-binding protein YSX 99.7 1.6E-17 5.4E-22 122.3 9.3 126 6-137 51-194 (195)
124 3a1s_A Iron(II) transport prot 99.7 6.1E-17 2.1E-21 125.4 11.9 125 7-138 34-167 (258)
125 3iby_A Ferrous iron transport 99.7 1.8E-17 6.1E-22 128.2 7.6 123 6-135 29-164 (256)
126 3gee_A MNME, tRNA modification 99.7 2.6E-16 8.8E-21 131.4 13.3 127 7-137 263-397 (476)
127 3cb4_D GTP-binding protein LEP 99.7 1E-16 3.5E-21 137.0 10.5 114 23-139 67-183 (599)
128 3pqc_A Probable GTP-binding pr 99.7 1.9E-16 6.4E-21 116.2 9.7 125 6-138 50-194 (195)
129 3b1v_A Ferrous iron uptake tra 99.7 4.3E-17 1.5E-21 127.1 5.7 120 12-137 35-163 (272)
130 3qq5_A Small GTP-binding prote 99.7 3.1E-16 1.1E-20 129.1 10.7 124 10-139 67-197 (423)
131 2ywe_A GTP-binding protein LEP 99.7 3E-16 1E-20 134.0 10.4 113 23-138 69-184 (600)
132 3k53_A Ferrous iron transport 99.7 5.9E-16 2E-20 120.4 11.1 130 5-140 30-168 (271)
133 3i8s_A Ferrous iron transport 99.7 1.2E-16 4.3E-21 124.6 6.5 127 6-139 31-170 (274)
134 2e87_A Hypothetical protein PH 99.6 1.8E-15 6.1E-20 122.2 13.0 113 26-138 213-336 (357)
135 1wf3_A GTP-binding protein; GT 99.6 1.9E-16 6.6E-21 125.1 6.0 114 25-142 53-177 (301)
136 4dcu_A GTP-binding protein ENG 99.6 4.3E-16 1.5E-20 129.6 8.0 127 7-138 225-369 (456)
137 4dhe_A Probable GTP-binding pr 99.6 4.2E-16 1.4E-20 117.1 7.0 113 24-139 76-212 (223)
138 1nrj_B SR-beta, signal recogni 99.6 3.3E-17 1.1E-21 122.9 0.6 110 6-124 43-170 (218)
139 2hjg_A GTP-binding protein ENG 99.6 5.8E-16 2E-20 128.2 7.1 126 8-138 206-349 (436)
140 1lnz_A SPO0B-associated GTP-bi 99.6 1.2E-15 4E-20 122.5 7.8 113 27-141 206-333 (342)
141 1xzp_A Probable tRNA modificat 99.6 3.1E-15 1.1E-19 125.0 9.7 122 8-137 274-404 (482)
142 3sjy_A Translation initiation 99.6 4.3E-15 1.5E-19 121.8 9.8 112 26-138 74-192 (403)
143 1s0u_A EIF-2-gamma, translatio 99.6 1.9E-14 6.6E-19 118.1 13.1 128 6-138 39-198 (408)
144 3tr5_A RF-3, peptide chain rel 99.6 2.6E-15 8.8E-20 126.8 7.8 70 25-97 80-149 (528)
145 1r5b_A Eukaryotic peptide chai 99.6 1E-15 3.4E-20 127.7 4.2 119 7-129 105-243 (467)
146 3izy_P Translation initiation 99.6 4.6E-16 1.6E-20 131.3 2.0 128 7-138 33-168 (537)
147 1mky_A Probable GTP-binding pr 99.6 5.1E-15 1.7E-19 122.6 8.1 124 7-139 31-167 (439)
148 3j2k_7 ERF3, eukaryotic polype 99.6 1.1E-14 3.8E-19 120.5 10.1 121 8-130 78-217 (439)
149 2yv5_A YJEQ protein; hydrolase 99.6 1.5E-14 5.3E-19 114.2 9.6 96 37-134 66-165 (302)
150 3geh_A MNME, tRNA modification 99.5 7.3E-15 2.5E-19 122.2 7.9 124 8-140 255-386 (462)
151 1jny_A EF-1-alpha, elongation 99.5 2.1E-15 7.2E-20 124.8 4.0 107 23-130 80-205 (435)
152 1wb1_A Translation elongation 99.5 1.3E-14 4.4E-19 121.5 7.9 119 9-137 59-188 (482)
153 1g7s_A Translation initiation 99.5 1E-13 3.5E-18 118.5 13.2 104 28-137 71-217 (594)
154 1kk1_A EIF2gamma; initiation o 99.5 1.3E-13 4.4E-18 113.2 13.1 129 5-138 40-200 (410)
155 2hjg_A GTP-binding protein ENG 99.5 4.1E-15 1.4E-19 123.0 3.3 126 8-139 32-166 (436)
156 1ega_A Protein (GTP-binding pr 99.5 6.2E-14 2.1E-18 110.7 9.2 114 25-142 54-179 (301)
157 3p26_A Elongation factor 1 alp 99.5 1.4E-14 4.9E-19 121.2 5.4 107 22-128 106-228 (483)
158 2c78_A Elongation factor TU-A; 99.5 9.5E-15 3.2E-19 119.8 4.1 115 20-137 68-211 (405)
159 1zun_B Sulfate adenylate trans 99.5 3.3E-14 1.1E-18 117.6 7.3 103 25-129 102-215 (434)
160 1d2e_A Elongation factor TU (E 99.5 4E-14 1.4E-18 115.8 6.8 113 22-137 61-194 (397)
161 2elf_A Protein translation elo 99.5 6E-14 2.1E-18 113.8 7.1 123 7-138 44-180 (370)
162 2qag_A Septin-2, protein NEDD5 99.5 1.8E-14 6.3E-19 116.5 3.5 129 8-140 76-235 (361)
163 3t5d_A Septin-7; GTP-binding p 99.5 3.4E-14 1.2E-18 110.6 4.5 127 8-137 46-203 (274)
164 1zo1_I IF2, translation initia 99.5 8.9E-15 3.1E-19 122.5 1.2 105 27-134 51-163 (501)
165 3avx_A Elongation factor TS, e 99.4 6.1E-14 2.1E-18 126.1 5.7 126 9-137 341-485 (1289)
166 2xtp_A GTPase IMAP family memb 99.4 2.2E-13 7.5E-18 105.0 7.6 132 7-140 52-210 (260)
167 3izq_1 HBS1P, elongation facto 99.4 4.4E-14 1.5E-18 121.2 4.0 105 24-128 242-362 (611)
168 1f60_A Elongation factor EEF1A 99.4 1.2E-13 4.2E-18 114.9 6.0 115 8-128 70-202 (458)
169 1mky_A Probable GTP-binding pr 99.4 7E-13 2.4E-17 109.7 10.1 126 8-138 211-355 (439)
170 2ged_A SR-beta, signal recogni 99.4 9E-14 3.1E-18 102.0 4.3 74 25-98 89-172 (193)
171 2qtf_A Protein HFLX, GTP-bindi 99.4 9.3E-13 3.2E-17 106.5 10.3 122 15-139 216-355 (364)
172 3l82_B F-box only protein 4; T 99.4 1.8E-13 6.2E-18 101.8 5.5 105 34-139 109-224 (227)
173 1dar_A EF-G, elongation factor 99.4 6.2E-13 2.1E-17 115.6 9.1 84 6-96 60-143 (691)
174 4dcu_A GTP-binding protein ENG 99.4 2.3E-13 7.8E-18 113.2 3.8 124 9-138 53-185 (456)
175 2dy1_A Elongation factor G; tr 99.4 8E-13 2.7E-17 114.5 7.3 74 19-95 66-139 (665)
176 2rdo_7 EF-G, elongation factor 99.3 4.7E-12 1.6E-16 110.3 11.3 87 7-96 59-148 (704)
177 2h5e_A Peptide chain release f 99.3 1.8E-12 6.1E-17 109.6 8.3 84 10-96 65-148 (529)
178 3mca_A HBS1, elongation factor 99.3 2E-13 7E-18 116.8 1.5 115 8-126 238-371 (592)
179 3lxx_A GTPase IMAP family memb 99.3 2.6E-12 8.8E-17 97.8 6.9 125 11-139 64-215 (239)
180 3l2o_B F-box only protein 4; s 99.3 2E-12 6.9E-17 100.5 5.7 105 34-139 194-309 (312)
181 2xex_A Elongation factor G; GT 99.3 1.4E-11 4.9E-16 107.1 10.5 68 26-96 74-141 (693)
182 3lxw_A GTPase IMAP family memb 99.3 7.6E-12 2.6E-16 96.0 7.3 112 26-139 69-209 (247)
183 2aka_B Dynamin-1; fusion prote 99.3 3.1E-12 1.1E-16 100.2 4.5 105 27-135 125-250 (299)
184 1udx_A The GTP-binding protein 99.2 1.1E-10 3.7E-15 95.9 11.1 114 27-141 205-328 (416)
185 2qnr_A Septin-2, protein NEDD5 99.2 9.6E-12 3.3E-16 98.2 4.1 129 9-141 58-217 (301)
186 1pui_A ENGB, probable GTP-bind 99.2 5.5E-11 1.9E-15 88.2 7.3 125 7-139 55-200 (210)
187 2j69_A Bacterial dynamin-like 99.1 5.8E-11 2E-15 103.4 6.4 109 28-138 175-325 (695)
188 3h2y_A GTPase family protein; 99.1 7.1E-11 2.4E-15 95.7 6.4 96 36-136 55-158 (368)
189 3vqt_A RF-3, peptide chain rel 99.1 1E-10 3.5E-15 99.2 7.3 69 25-96 98-166 (548)
190 3p32_A Probable GTPase RV1496/ 99.1 4.5E-11 1.6E-15 96.3 2.7 103 26-138 171-284 (355)
191 1yrb_A ATP(GTP)binding protein 99.1 1.9E-10 6.4E-15 88.3 5.9 110 27-138 109-257 (262)
192 1wxq_A GTP-binding protein; st 99.0 5.5E-11 1.9E-15 97.2 2.4 59 82-140 214-273 (397)
193 1n0u_A EF-2, elongation factor 99.0 2.6E-10 9E-15 101.1 6.7 85 8-95 67-163 (842)
194 3t34_A Dynamin-related protein 99.0 7.9E-11 2.7E-15 95.0 2.5 106 26-133 135-256 (360)
195 2qag_C Septin-7; cell cycle, c 99.0 3E-10 1E-14 93.3 5.8 127 8-137 69-226 (418)
196 3ec1_A YQEH GTPase; atnos1, at 99.0 2.6E-10 8.7E-15 92.4 5.0 97 35-136 56-160 (369)
197 1jwy_B Dynamin A GTPase domain 99.0 1.4E-09 4.7E-14 85.7 8.4 111 27-141 131-265 (315)
198 1puj_A YLQF, conserved hypothe 98.9 1.6E-09 5.4E-14 84.7 6.0 98 33-137 5-105 (282)
199 2wsm_A Hydrogenase expression/ 98.9 1.9E-09 6.5E-14 80.5 5.8 104 26-139 108-215 (221)
200 3def_A T7I23.11 protein; chlor 98.9 1.8E-09 6.2E-14 83.3 4.6 74 19-95 78-164 (262)
201 1h65_A Chloroplast outer envel 98.8 2.6E-09 8.7E-14 82.7 5.2 75 21-96 81-168 (270)
202 3j25_A Tetracycline resistance 98.8 2.2E-10 7.4E-15 98.9 -1.4 69 25-96 65-133 (638)
203 4fn5_A EF-G 1, elongation fact 98.8 1.9E-08 6.5E-13 87.8 9.8 69 25-96 83-151 (709)
204 2p67_A LAO/AO transport system 98.8 3.2E-09 1.1E-13 85.0 4.5 102 26-137 148-260 (341)
205 2x2e_A Dynamin-1; nitration, h 98.8 1E-09 3.5E-14 88.2 1.2 105 26-134 129-254 (353)
206 2hf9_A Probable hydrogenase ni 98.8 2.2E-11 7.6E-16 91.5 -9.0 57 82-138 164-224 (226)
207 2www_A Methylmalonic aciduria 98.6 6.2E-08 2.1E-12 77.8 7.6 101 27-137 167-278 (349)
208 3zvr_A Dynamin-1; hydrolase, D 98.6 3.5E-08 1.2E-12 86.3 5.4 112 27-142 150-285 (772)
209 1jal_A YCHF protein; nucleotid 98.5 7E-07 2.4E-11 71.9 10.4 36 27-62 66-108 (363)
210 1t9h_A YLOQ, probable GTPase E 98.5 1.5E-07 5.1E-12 74.2 5.4 91 38-130 74-169 (307)
211 2qpt_A EH domain-containing pr 98.5 4.1E-08 1.4E-12 83.4 2.1 67 28-96 155-232 (550)
212 2dby_A GTP-binding protein; GD 98.4 2.2E-06 7.5E-11 69.2 10.9 37 26-62 68-111 (368)
213 3cnl_A YLQF, putative uncharac 98.4 7.7E-08 2.6E-12 74.3 2.2 90 35-134 5-97 (262)
214 2qm8_A GTPase/ATPase; G protei 98.2 3.5E-06 1.2E-10 67.2 6.6 102 26-137 147-260 (337)
215 2rcn_A Probable GTPase ENGC; Y 98.1 1.1E-05 3.8E-10 64.8 8.6 83 47-132 127-213 (358)
216 4a9a_A Ribosome-interacting GT 97.1 0.004 1.4E-07 50.3 9.9 72 20-95 114-195 (376)
217 2j37_W Signal recognition part 97.1 0.00045 1.6E-08 57.9 4.4 102 26-135 183-310 (504)
218 2ohf_A Protein OLA1, GTP-bindi 96.6 0.00064 2.2E-08 55.3 1.5 40 27-66 86-132 (396)
219 1ni3_A YCHF GTPase, YCHF GTP-b 96.1 0.045 1.5E-06 44.4 9.8 55 82-136 224-305 (392)
220 4dzz_A Plasmid partitioning pr 95.5 0.029 1E-06 40.4 5.9 84 27-115 76-162 (206)
221 3dm5_A SRP54, signal recogniti 95.4 0.044 1.5E-06 45.1 7.3 93 27-128 183-281 (443)
222 1j8m_F SRP54, signal recogniti 95.2 0.048 1.6E-06 42.4 6.7 93 26-128 180-281 (297)
223 2v3c_C SRP54, signal recogniti 95.1 0.027 9.2E-07 46.2 5.1 84 26-117 180-271 (432)
224 3cwq_A Para family chromosome 94.1 0.16 5.4E-06 37.1 6.9 86 26-115 67-153 (209)
225 3k9g_A PF-32 protein; ssgcid, 93.6 0.3 1E-05 36.7 7.8 65 26-93 144-208 (267)
226 3kl4_A SRP54, signal recogniti 92.9 0.19 6.4E-06 41.3 6.0 92 26-126 179-278 (433)
227 3ea0_A ATPase, para family; al 92.0 1.1 3.6E-05 32.9 8.8 86 26-117 118-204 (245)
228 3end_A Light-independent proto 91.8 1.8 6.1E-05 33.1 10.2 84 26-116 156-242 (307)
229 1wcv_1 SOJ, segregation protei 91.6 0.52 1.8E-05 35.3 6.7 67 26-95 111-182 (257)
230 3ec1_A YQEH GTPase; atnos1, at 90.9 0.044 1.5E-06 44.0 0.0 94 29-125 214-318 (369)
231 3h2y_A GTPase family protein; 90.4 0.029 9.9E-07 45.0 -1.4 89 29-120 213-312 (368)
232 1g3q_A MIND ATPase, cell divis 89.4 1.2 4.3E-05 32.4 7.0 84 26-115 111-194 (237)
233 1hyq_A MIND, cell division inh 89.2 1.2 4.2E-05 33.1 6.9 84 26-115 110-193 (263)
234 1tq4_A IIGP1, interferon-induc 88.8 1.2 4.2E-05 36.1 7.0 108 28-142 121-257 (413)
235 3q9l_A Septum site-determining 88.0 0.55 1.9E-05 34.9 4.2 87 26-115 113-208 (260)
236 3kjh_A CO dehydrogenase/acetyl 88.0 1.6 5.3E-05 32.0 6.7 65 25-93 130-194 (254)
237 2qag_B Septin-6, protein NEDD5 87.8 2.6 9E-05 34.4 8.4 63 53-119 151-217 (427)
238 2ph1_A Nucleotide-binding prot 87.6 0.84 2.9E-05 34.2 5.1 89 25-116 127-224 (262)
239 2xj4_A MIPZ; replication, cell 85.6 1.1 3.9E-05 34.0 4.9 68 26-96 103-192 (286)
240 2oze_A ORF delta'; para, walke 83.4 1.1 3.7E-05 34.2 3.9 83 26-111 154-241 (298)
241 1zu4_A FTSY; GTPase, signal re 82.5 2.6 8.7E-05 32.9 5.8 92 26-127 191-295 (320)
242 3e70_C DPA, signal recognition 81.7 4.9 0.00017 31.5 7.1 91 29-128 214-310 (328)
243 1cp2_A CP2, nitrogenase iron p 81.3 9.8 0.00033 28.1 8.5 86 26-115 115-205 (269)
244 2xxa_A Signal recognition part 79.7 6.1 0.00021 32.2 7.3 84 26-117 183-273 (433)
245 1byi_A Dethiobiotin synthase; 79.4 12 0.00041 26.7 8.3 87 26-116 108-201 (224)
246 3bfv_A CAPA1, CAPB2, membrane 78.9 3.1 0.00011 31.5 5.1 66 26-95 191-257 (271)
247 3pg5_A Uncharacterized protein 76.8 4.1 0.00014 32.1 5.4 42 26-70 153-194 (361)
248 2ffh_A Protein (FFH); SRP54, s 76.5 9.2 0.00032 31.1 7.4 102 27-138 181-293 (425)
249 2afh_E Nitrogenase iron protei 75.3 17 0.00057 27.3 8.3 87 26-115 118-208 (289)
250 3la6_A Tyrosine-protein kinase 73.9 6 0.0002 30.2 5.5 66 27-95 202-267 (286)
251 2px0_A Flagellar biosynthesis 67.4 6.9 0.00023 30.0 4.5 85 27-118 183-273 (296)
252 3cio_A ETK, tyrosine-protein k 66.2 9.8 0.00034 29.1 5.2 66 26-95 213-279 (299)
253 3ez9_A Para; DNA binding, wing 65.8 11 0.00039 29.9 5.7 66 26-93 247-321 (403)
254 3do6_A Formate--tetrahydrofola 65.3 30 0.001 28.8 7.9 65 71-137 351-417 (543)
255 1ls1_A Signal recognition part 61.1 38 0.0013 25.7 7.7 86 26-119 180-272 (295)
256 3sop_A Neuronal-specific septi 58.8 15 0.00051 27.7 4.9 45 48-96 109-154 (270)
257 1bif_A 6-phosphofructo-2-kinas 57.5 3.7 0.00013 33.7 1.4 52 27-79 87-148 (469)
258 3szr_A Interferon-induced GTP- 55.4 7.6 0.00026 33.1 3.0 68 28-97 148-229 (608)
259 1vma_A Cell division protein F 54.1 71 0.0024 24.4 8.4 86 27-119 187-284 (306)
260 4a9a_A Ribosome-interacting GT 53.7 29 0.00098 27.7 6.0 51 82-137 249-299 (376)
261 2yhs_A FTSY, cell division pro 52.3 23 0.00078 29.5 5.3 91 28-127 377-479 (503)
262 3pzx_A Formate--tetrahydrofola 49.6 17 0.00058 30.4 4.0 58 81-138 373-430 (557)
263 1rj9_A FTSY, signal recognitio 49.2 81 0.0028 24.1 7.8 83 29-118 187-281 (304)
264 4hs4_A Chromate reductase; tri 48.6 17 0.00058 26.0 3.6 46 46-91 69-118 (199)
265 1ko7_A HPR kinase/phosphatase; 47.9 19 0.00066 28.0 4.0 52 81-137 79-130 (314)
266 1t0i_A YLR011WP; FMN binding p 45.1 28 0.00095 24.2 4.3 45 46-90 80-124 (191)
267 2fz5_A Flavodoxin; alpha/beta 43.1 24 0.00083 22.8 3.5 68 47-115 43-112 (137)
268 3svl_A Protein YIEF; E. coli C 38.5 35 0.0012 24.1 3.9 46 46-91 68-117 (193)
269 3ez2_A Plasmid partition prote 38.2 37 0.0013 26.8 4.4 36 26-63 244-279 (398)
270 1rtt_A Conserved hypothetical 37.1 16 0.00055 25.6 1.9 45 47-91 69-117 (193)
271 2ark_A Flavodoxin; FMN, struct 34.8 37 0.0013 23.6 3.5 47 46-92 48-98 (188)
272 3fvw_A Putative NAD(P)H-depend 34.7 78 0.0027 22.1 5.3 68 46-113 63-141 (192)
273 1rli_A Trp repressor binding p 34.6 31 0.0011 23.6 3.1 44 47-90 68-123 (184)
274 3r6w_A FMN-dependent NADH-azor 34.4 32 0.0011 24.5 3.2 46 47-92 84-147 (212)
275 3fkq_A NTRC-like two-domain pr 34.2 18 0.00063 28.4 2.0 64 26-92 259-322 (373)
276 2wkj_A N-acetylneuraminate lya 33.4 49 0.0017 25.3 4.2 46 49-94 105-154 (303)
277 3uc9_A Increased recombination 33.1 10 0.00035 28.2 0.3 83 52-139 104-200 (233)
278 3fwy_A Light-independent proto 32.6 1.7E+02 0.0057 22.4 10.0 84 27-117 164-250 (314)
279 3rl5_A Metallophosphoesterase 32.6 46 0.0016 25.5 3.9 61 28-94 62-122 (296)
280 3k1y_A Oxidoreductase; structu 31.0 37 0.0013 24.1 3.0 46 46-91 81-127 (191)
281 3lcm_A SMU.1420, putative oxid 31.0 44 0.0015 23.6 3.4 46 47-92 70-129 (196)
282 5nul_A Flavodoxin; electron tr 30.9 64 0.0022 20.9 4.1 45 47-91 42-88 (138)
283 2a5l_A Trp repressor binding p 30.3 45 0.0015 23.1 3.4 70 46-115 67-143 (200)
284 1t5b_A Acyl carrier protein ph 30.1 33 0.0011 23.9 2.6 46 47-92 83-142 (201)
285 1d4a_A DT-diaphorase, quinone 30.1 53 0.0018 24.6 3.9 46 48-93 91-150 (273)
286 2woj_A ATPase GET3; tail-ancho 29.5 97 0.0033 24.1 5.5 41 50-93 234-275 (354)
287 1sqs_A Conserved hypothetical 28.4 1.4E+02 0.0047 21.6 5.9 69 47-115 76-149 (242)
288 1eiw_A Hypothetical protein MT 26.8 70 0.0024 20.6 3.5 40 46-90 34-75 (111)
289 3eb2_A Putative dihydrodipicol 26.8 92 0.0031 23.7 4.8 40 49-89 98-137 (300)
290 3ghf_A Septum site-determining 26.5 1.3E+02 0.0046 19.4 6.9 66 54-121 18-84 (120)
291 3m5v_A DHDPS, dihydrodipicolin 25.5 84 0.0029 23.9 4.4 40 49-89 102-141 (301)
292 3gfs_A FMN-dependent NADPH-azo 25.5 29 0.00098 23.8 1.5 70 47-116 60-131 (174)
293 3qze_A DHDPS, dihydrodipicolin 25.2 88 0.003 24.0 4.4 45 49-94 117-165 (314)
294 3tak_A DHDPS, dihydrodipicolin 25.2 89 0.003 23.6 4.4 45 49-94 95-143 (291)
295 3ha2_A NADPH-quinone reductase 25.1 81 0.0028 22.0 3.9 47 46-92 47-102 (177)
296 3b4u_A Dihydrodipicolinate syn 24.9 68 0.0023 24.4 3.7 41 49-89 97-140 (294)
297 2vzf_A NADH-dependent FMN redu 24.9 35 0.0012 24.0 1.9 44 47-90 66-110 (197)
298 3si9_A DHDPS, dihydrodipicolin 24.9 88 0.003 24.1 4.4 40 49-89 116-155 (315)
299 3flu_A DHDPS, dihydrodipicolin 24.6 92 0.0031 23.7 4.4 46 49-95 101-150 (297)
300 2zki_A 199AA long hypothetical 24.6 67 0.0023 22.2 3.4 70 47-116 67-143 (199)
301 2nx2_A Hypothetical protein YP 24.6 75 0.0026 22.3 3.6 15 48-62 128-142 (181)
302 3daq_A DHDPS, dihydrodipicolin 24.4 82 0.0028 23.9 4.1 45 49-94 96-144 (292)
303 3b6i_A Flavoprotein WRBA; flav 24.2 44 0.0015 23.1 2.4 49 45-93 63-116 (198)
304 1xky_A Dihydrodipicolinate syn 24.1 89 0.003 23.8 4.2 45 49-94 106-154 (301)
305 2ehh_A DHDPS, dihydrodipicolin 24.1 96 0.0033 23.5 4.4 40 49-89 94-133 (294)
306 2yxg_A DHDPS, dihydrodipicolin 24.0 95 0.0032 23.4 4.4 40 49-89 94-133 (289)
307 3l21_A DHDPS, dihydrodipicolin 23.8 82 0.0028 24.1 4.0 45 49-94 109-157 (304)
308 2vc6_A MOSA, dihydrodipicolina 23.7 96 0.0033 23.4 4.4 45 49-94 94-142 (292)
309 2hpv_A FMN-dependent NADH-azor 23.6 69 0.0024 22.4 3.4 44 47-90 91-148 (208)
310 2khz_A C-MYC-responsive protei 23.4 1.1E+02 0.0037 21.0 4.2 42 46-93 73-114 (165)
311 3cpr_A Dihydrodipicolinate syn 22.9 1E+02 0.0035 23.5 4.4 46 49-95 110-159 (304)
312 1w3i_A EDA, 2-keto-3-deoxy glu 22.4 1.1E+02 0.0038 23.2 4.5 46 49-95 90-140 (293)
313 1o5k_A DHDPS, dihydrodipicolin 22.2 96 0.0033 23.7 4.1 40 49-89 106-145 (306)
314 3s2y_A Chromate reductase; ura 27.6 19 0.00065 25.7 0.0 47 45-91 68-118 (199)
315 3u7r_A NADPH-dependent FMN red 21.6 54 0.0018 23.2 2.4 48 45-92 62-114 (190)
316 2ojp_A DHDPS, dihydrodipicolin 21.4 1E+02 0.0035 23.3 4.1 40 49-89 95-134 (292)
317 2q62_A ARSH; alpha/beta, flavo 21.3 49 0.0017 24.5 2.2 46 46-91 94-145 (247)
318 4hhu_A OR280; engineered prote 21.0 1.8E+02 0.0063 19.0 6.5 65 53-117 3-76 (170)
319 3d0c_A Dihydrodipicolinate syn 20.8 96 0.0033 23.8 3.8 40 49-89 105-144 (314)
320 1ydg_A Trp repressor binding p 20.8 59 0.002 22.9 2.5 47 46-92 74-125 (211)
321 2f62_A Nucleoside 2-deoxyribos 20.6 91 0.0031 21.5 3.3 41 46-92 63-108 (161)
322 2rfg_A Dihydrodipicolinate syn 20.6 97 0.0033 23.5 3.8 45 49-94 94-142 (297)
323 2v9d_A YAGE; dihydrodipicolini 20.6 1.1E+02 0.0038 23.8 4.2 40 49-89 125-164 (343)
No 1
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=100.00 E-value=1.1e-31 Score=203.15 Aligned_cols=180 Identities=74% Similarity=1.205 Sum_probs=161.1
Q ss_pred CccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCC
Q 029875 4 SVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENI 83 (186)
Q Consensus 4 ~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~ 83 (186)
...+.||+|.++....+.+++..+.+.||||+|++.|..++..++++++++|+|||++++.+|+.+..|+..+.....+.
T Consensus 41 ~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~ 120 (221)
T 3gj0_A 41 EKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENI 120 (221)
T ss_dssp TCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSTTC
T ss_pred CCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCC
Confidence 45688999999999999999999999999999999999999999999999999999999999999999999999988899
Q ss_pred CEEEEEeCCCCCCcccChHHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCCCCcccccCCCCCCCccccCHHHHH
Q 029875 84 PIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ 163 (186)
Q Consensus 84 p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (186)
|+++|+||+|+.++....+...++...+++++++||++|.|++++|.++.+.+...+.......+...+++...+....+
T Consensus 121 p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (221)
T 3gj0_A 121 PIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVMDPALAA 200 (221)
T ss_dssp CEEEEEECTTSSSCSSCGGGCCHHHHHTCEEEECBGGGTBTTTHHHHHHHHHHHTCTTCCEEECCCBCCCSSCCCHHHHH
T ss_pred CEEEEEECCccccccccHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhCcccccccCCCCCCCCCCcchhhhh
Confidence 99999999999876666666678888899999999999999999999999999999888888888888999999999999
Q ss_pred HHHHHHHHHhCCCCCCCccc
Q 029875 164 QHEAELAAAASQPLPDDDDD 183 (186)
Q Consensus 164 ~~~~~~~~~~~~~~p~~~~~ 183 (186)
+++..++.++.+++|++||+
T Consensus 201 ~~~~~~~~~~~~~~p~~~~~ 220 (221)
T 3gj0_A 201 QYEHDLEVAQTTALPDEDDD 220 (221)
T ss_dssp HHHHHHHHHHTC--------
T ss_pred hhHHHHhhhhccCCCCCCCC
Confidence 99999999999999998876
No 2
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.98 E-value=6.1e-32 Score=204.75 Aligned_cols=139 Identities=29% Similarity=0.475 Sum_probs=115.6
Q ss_pred CCCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc-
Q 029875 2 NVSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC- 80 (186)
Q Consensus 2 ~~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~- 80 (186)
.++..|.||+|.++..+.+.+++..+.++||||+|+++|..++..|+++|+++++|||++++.||+.+..|+..+....
T Consensus 37 ~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~ 116 (216)
T 4dkx_A 37 SFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERG 116 (216)
T ss_dssp CCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHT
T ss_pred CCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcC
Confidence 3577899999999999999999999999999999999999999999999999999999999999999999999998765
Q ss_pred CCCCEEEEEeCCCCCC-cccChH-HHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCCC
Q 029875 81 ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDP 140 (186)
Q Consensus 81 ~~~p~ilv~nK~Dl~~-~~~~~~-~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~ 140 (186)
++.|++|||||+|+.+ +.+..+ ..+++++++++|++|||++|.||+++|..|++.+....
T Consensus 117 ~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~SAktg~nV~e~F~~i~~~i~~~~ 178 (216)
T 4dkx_A 117 SDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGME 178 (216)
T ss_dssp TSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHHHHHHC----
T ss_pred CCCeEEEEeeccchHhcCcccHHHHhhHHHHhCCeeEEEeCCCCcCHHHHHHHHHHHHHhhh
Confidence 6899999999999985 555544 66899999999999999999999999999999986543
No 3
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.94 E-value=3.1e-26 Score=172.72 Aligned_cols=138 Identities=17% Similarity=0.276 Sum_probs=119.5
Q ss_pred CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHh-HHHHHHHHHhhcC
Q 029875 3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKN-VPTWHRDLCRVCE 81 (186)
Q Consensus 3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~-i~~~~~~~~~~~~ 81 (186)
+...|.||+|.++. +.+.+++..+.+.||||+|+++|..++..+++++|++|+|||++++.+|+. +..|+..+....+
T Consensus 52 ~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~ 130 (214)
T 3q3j_B 52 YPETYVPTVFENYT-ACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCP 130 (214)
T ss_dssp CCSSCCCCSEEEEE-EEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCT
T ss_pred CCCCcCCeeeeeEE-EEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCC
Confidence 56778999998874 677788999999999999999999999999999999999999999999998 6899999999888
Q ss_pred CCCEEEEEeCCCCCC-------------cccChH-HHHHHHHcCC-cEEEeccCCCCC-chHHHHHHHHHHhCCCC
Q 029875 82 NIPIVLCGNKVDVKN-------------RQVKAK-QVTFHRKKNL-QYYEISAKSNYN-FEKPFLYLARKLAGDPN 141 (186)
Q Consensus 82 ~~p~ilv~nK~Dl~~-------------~~~~~~-~~~~~~~~~~-~~~~~Sa~~~~g-i~~l~~~l~~~i~~~~~ 141 (186)
+.|++||+||+|+.+ +.+..+ ...++..+++ +|++|||++|.| |+++|..+++.+.....
T Consensus 131 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SA~~g~g~v~~lf~~l~~~~~~~~~ 206 (214)
T 3q3j_B 131 STRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLCLNKPS 206 (214)
T ss_dssp TSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSEEEECCTTTCHHHHHHHHHHHHHHHHC---
T ss_pred CCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCCCEEEEeccCCCcccHHHHHHHHHHHHhccCc
Confidence 999999999999975 334443 5688899998 999999999998 99999999999986643
No 4
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.94 E-value=1.8e-26 Score=169.02 Aligned_cols=136 Identities=28% Similarity=0.514 Sum_probs=107.3
Q ss_pred CccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc-CC
Q 029875 4 SVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-EN 82 (186)
Q Consensus 4 ~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-~~ 82 (186)
...+.||+|.++....+.+++..+.+.||||||++.|..++..+++++|++|+|||++++.+|+.+..|+..+.... .+
T Consensus 34 ~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~ 113 (183)
T 2fu5_C 34 NSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASAD 113 (183)
T ss_dssp --CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTT
T ss_pred CCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC
Confidence 45688999999999999999999999999999999999999999999999999999999999999999999998764 57
Q ss_pred CCEEEEEeCCCCCC-cccCh-HHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCC
Q 029875 83 IPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD 139 (186)
Q Consensus 83 ~p~ilv~nK~Dl~~-~~~~~-~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 139 (186)
.|+++|+||+|+.+ +.+.. +...++..++++++++||++|.||+++|.++.+.+...
T Consensus 114 ~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~i~~~ 172 (183)
T 2fu5_C 114 VEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAK 172 (183)
T ss_dssp CEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---CCHHHHHHHHHHHHHHH
T ss_pred CCEEEEEECccCCccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 99999999999975 34443 35678888899999999999999999999999988653
No 5
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.94 E-value=3e-26 Score=171.07 Aligned_cols=138 Identities=31% Similarity=0.501 Sum_probs=115.0
Q ss_pred CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc-C
Q 029875 3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-E 81 (186)
Q Consensus 3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-~ 81 (186)
++..+.||+|.++....+.+++..+.+.||||+|+++|..++..+++++|++|+|||++++.+|+.+..|+..+.... .
T Consensus 54 ~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~ 133 (201)
T 2hup_A 54 FSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGS 133 (201)
T ss_dssp C----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCT
T ss_pred CCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC
Confidence 456789999999999999999999999999999999999999999999999999999999999999999999998876 6
Q ss_pred CCCEEEEEeCCCCCC-cccCh-HHHHHHHHcCC-cEEEeccCCCCCchHHHHHHHHHHhCCC
Q 029875 82 NIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNL-QYYEISAKSNYNFEKPFLYLARKLAGDP 140 (186)
Q Consensus 82 ~~p~ilv~nK~Dl~~-~~~~~-~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~i~~~~ 140 (186)
+.|++||+||+|+.+ +.+.. +..+++..+++ +++++||++|.||+++|.+|++.+....
T Consensus 134 ~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~~~ 195 (201)
T 2hup_A 134 NIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELIMRH 195 (201)
T ss_dssp TCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCSEEEECBTTTTBSHHHHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCccccccccCHHHHHHHHHHcCCCEEEEEeCCCCCCHHHHHHHHHHHHHHhc
Confidence 799999999999975 34443 35678888898 9999999999999999999999987543
No 6
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.94 E-value=3.6e-25 Score=161.24 Aligned_cols=137 Identities=31% Similarity=0.490 Sum_probs=122.3
Q ss_pred CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCC
Q 029875 3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCEN 82 (186)
Q Consensus 3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~ 82 (186)
+...+.||++.++....+.+++..+.+.+|||||++.+..++..+++++|++|+|||++++.++..+..|+..+....++
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~ 113 (181)
T 3tw8_B 34 FSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDD 113 (181)
T ss_dssp ---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHCTT
T ss_pred CCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCC
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999888888
Q ss_pred CCEEEEEeCCCCCCcc-cC-hHHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCC
Q 029875 83 IPIVLCGNKVDVKNRQ-VK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD 139 (186)
Q Consensus 83 ~p~ilv~nK~Dl~~~~-~~-~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 139 (186)
.|+++|+||+|+.+.. +. .....++...+++++++||++|.|++++|+++.+.+...
T Consensus 114 ~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 172 (181)
T 3tw8_B 114 VCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVLRA 172 (181)
T ss_dssp SEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCchhcccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 9999999999997533 33 335578888899999999999999999999999988654
No 7
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.94 E-value=4.5e-25 Score=163.33 Aligned_cols=137 Identities=20% Similarity=0.313 Sum_probs=121.5
Q ss_pred CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhH-HHHHHHHHhhcC
Q 029875 3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCE 81 (186)
Q Consensus 3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i-~~~~~~~~~~~~ 81 (186)
+...|.||+|.++.. .+.+++..+.++||||||+++|..++..+++++|++|+|||++++.+|+.+ ..|+..+.+...
T Consensus 48 ~~~~~~~t~~~~~~~-~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~ 126 (194)
T 3reg_A 48 IPTAYVPTVFENFSH-VMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYID 126 (194)
T ss_dssp CCSSCCCCSEEEEEE-EEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT
T ss_pred CCCccCCeeeeeeEE-EEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCC
Confidence 456789999988875 677899999999999999999999999999999999999999999999997 789999988878
Q ss_pred CCCEEEEEeCCCCCC---cccChH-HHHHHHHcCCc-EEEeccCCCCCchHHHHHHHHHHhCCC
Q 029875 82 NIPIVLCGNKVDVKN---RQVKAK-QVTFHRKKNLQ-YYEISAKSNYNFEKPFLYLARKLAGDP 140 (186)
Q Consensus 82 ~~p~ilv~nK~Dl~~---~~~~~~-~~~~~~~~~~~-~~~~Sa~~~~gi~~l~~~l~~~i~~~~ 140 (186)
+.|+++|+||+|+.+ +.+..+ ...++..+++. ++++||++|.||+++|.++++.+....
T Consensus 127 ~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~ 190 (194)
T 3reg_A 127 TAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDCIFSNK 190 (194)
T ss_dssp TSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECBTTTTBSHHHHHHHHHHHHHCSC
T ss_pred CCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEeecCCCCCHHHHHHHHHHHHHhcC
Confidence 899999999999974 334433 55788888988 999999999999999999999998764
No 8
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.94 E-value=2.8e-25 Score=163.96 Aligned_cols=139 Identities=34% Similarity=0.532 Sum_probs=125.2
Q ss_pred CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc--
Q 029875 3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-- 80 (186)
Q Consensus 3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-- 80 (186)
+...+.||+|.++....+.+++..+.+.||||||++.+..++..+++++|++|+|||++++.++..+..|+..+....
T Consensus 40 ~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~ 119 (195)
T 1x3s_A 40 FDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTR 119 (195)
T ss_dssp CCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSC
T ss_pred CCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCc
Confidence 456789999999999999999999999999999999999999999999999999999999999999999999998764
Q ss_pred CCCCEEEEEeCCCCCCcccChH-HHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCCCC
Q 029875 81 ENIPIVLCGNKVDVKNRQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPN 141 (186)
Q Consensus 81 ~~~p~ilv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~ 141 (186)
.+.|+++|+||+|+.++.+..+ ...++..++++++++||++|.|++++|.+|.+.+.+.+.
T Consensus 120 ~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~ 181 (195)
T 1x3s_A 120 NDIVNMLVGNKIDKENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTPG 181 (195)
T ss_dssp SCCEEEEEEECTTSSSCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHHTSGG
T ss_pred CCCcEEEEEECCcCcccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHHhhhh
Confidence 5799999999999976655543 567888889999999999999999999999999987543
No 9
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.94 E-value=1.8e-25 Score=167.17 Aligned_cols=137 Identities=33% Similarity=0.568 Sum_probs=122.3
Q ss_pred CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc-C
Q 029875 3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-E 81 (186)
Q Consensus 3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-~ 81 (186)
+...+.||+|.++....+.+++..+.++||||+|+++|..++..+++++|++|+|||++++.+|+.+..|+..+.... .
T Consensus 51 ~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~ 130 (201)
T 2ew1_A 51 FPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASN 130 (201)
T ss_dssp CCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT
T ss_pred CCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC
Confidence 456788999999999999999999999999999999999999999999999999999999999999999999998875 5
Q ss_pred CCCEEEEEeCCCCCC-cccChH-HHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCC
Q 029875 82 NIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD 139 (186)
Q Consensus 82 ~~p~ilv~nK~Dl~~-~~~~~~-~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 139 (186)
+.|+++|+||+|+.+ +.+..+ ...++...+++++++||++|.||+++|.++++.+...
T Consensus 131 ~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i~~~ 190 (201)
T 2ew1_A 131 KVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLISE 190 (201)
T ss_dssp TCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 789999999999974 344333 5577888899999999999999999999999988653
No 10
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.94 E-value=6.9e-27 Score=172.67 Aligned_cols=135 Identities=16% Similarity=0.113 Sum_probs=119.0
Q ss_pred ccccccceEEEEEEEE-EECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCC------ChhhHHhHHHHHHHHH
Q 029875 5 VWGKATIGVEVHPLDF-FTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVT------ARLTYKNVPTWHRDLC 77 (186)
Q Consensus 5 ~~~~~Tig~~~~~~~~-~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~------~~~s~~~i~~~~~~~~ 77 (186)
..+.||+|.++....+ .+++..+.++||||||+++|..++..+++++|++|+|||++ +..+|+.+..|+..+.
T Consensus 51 ~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~ 130 (198)
T 3t1o_A 51 TEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYG 130 (198)
T ss_dssp CSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCSHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTT
T ss_pred cccccceeeeecccccccccCCceEEEEEeCCChHHHHHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhc
Confidence 4477899999998877 77889999999999999999999999999999999999999 5678888888988886
Q ss_pred hhcCCCCEEEEEeCCCCCCcccChHHHHHHHHcCC-cEEEeccCCCCCchHHHHHHHHHHhCC
Q 029875 78 RVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL-QYYEISAKSNYNFEKPFLYLARKLAGD 139 (186)
Q Consensus 78 ~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 139 (186)
....+.|+++|+||+|+.+.....+..+++..+++ +++++||++|.|++++|.+|++.+.+.
T Consensus 131 ~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~~ 193 (198)
T 3t1o_A 131 LTLDDVPIVIQVNKRDLPDALPVEMVRAVVDPEGKFPVLEAVATEGKGVFETLKEVSRLVLAR 193 (198)
T ss_dssp CCTTSSCEEEEEECTTSTTCCCHHHHHHHHCTTCCSCEEECBGGGTBTHHHHHHHHHHHHHHH
T ss_pred cccCCCCEEEEEEchhcccccCHHHHHHHHHhcCCceEEEEecCCCcCHHHHHHHHHHHHHHH
Confidence 55578999999999999876444556688888888 999999999999999999999988754
No 11
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.93 E-value=2.1e-25 Score=160.91 Aligned_cols=137 Identities=27% Similarity=0.474 Sum_probs=116.8
Q ss_pred CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc-C
Q 029875 3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-E 81 (186)
Q Consensus 3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-~ 81 (186)
+...+.||+|.++....+.+++..+.+.||||||++.+..++..+++++|++|+|||++++.+++.+..|+..+.... .
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~ 107 (170)
T 1g16_A 28 FNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHAND 107 (170)
T ss_dssp CCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCT
T ss_pred CCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC
Confidence 456789999999998899989999999999999999999999999999999999999999999999999999988875 5
Q ss_pred CCCEEEEEeCCCCCCcccChH-HHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCC
Q 029875 82 NIPIVLCGNKVDVKNRQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD 139 (186)
Q Consensus 82 ~~p~ilv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 139 (186)
+.|+++|+||+|+.++....+ ...+++.++++++++||++|.|++++|.++.+.+.+.
T Consensus 108 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~ 166 (170)
T 1g16_A 108 EAQLLLVGNKSDMETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEK 166 (170)
T ss_dssp TCEEEEEEECTTCTTCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHHHHHHHT
T ss_pred CCcEEEEEECccCCcCccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 799999999999976555544 4578888899999999999999999999999988654
No 12
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.93 E-value=2.3e-25 Score=160.42 Aligned_cols=136 Identities=29% Similarity=0.527 Sum_probs=122.5
Q ss_pred CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCC
Q 029875 3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCEN 82 (186)
Q Consensus 3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~ 82 (186)
+...+.||+|.++....+.+++..+.+.+|||||++.+..++..+++++|++++|||++++.+++.+..|+..+.....+
T Consensus 30 ~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~ 109 (168)
T 1z2a_A 30 FTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGD 109 (168)
T ss_dssp CCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCS
T ss_pred CCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCC
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999887778
Q ss_pred CCEEEEEeCCCCCC-cccCh-HHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhC
Q 029875 83 IPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG 138 (186)
Q Consensus 83 ~p~ilv~nK~Dl~~-~~~~~-~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 138 (186)
.|+++|+||+|+.+ +.+.. +...++..++++++++||++|.|++++|+++.+.+.+
T Consensus 110 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 167 (168)
T 1z2a_A 110 IPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKHLQ 167 (168)
T ss_dssp CCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHHHHHHHC
T ss_pred CCEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHhh
Confidence 99999999999975 33333 3557888889999999999999999999999988864
No 13
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.93 E-value=6e-25 Score=160.61 Aligned_cols=139 Identities=22% Similarity=0.225 Sum_probs=120.5
Q ss_pred CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc--
Q 029875 3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-- 80 (186)
Q Consensus 3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-- 80 (186)
+...|.||++..+ ...+.+++..+.++||||||++.|..++..+++++|++++|||++++.+|+.+..|+..+....
T Consensus 31 ~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~ 109 (181)
T 3t5g_A 31 FVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGK 109 (181)
T ss_dssp CCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC--
T ss_pred CCCCCCCCccccE-EEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC
Confidence 4567899999888 6778889999999999999999999999999999999999999999999999999999987764
Q ss_pred CCCCEEEEEeCCCCCC-cccCh-HHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCCCCc
Q 029875 81 ENIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNL 142 (186)
Q Consensus 81 ~~~p~ilv~nK~Dl~~-~~~~~-~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~~ 142 (186)
.+.|+++|+||+|+.+ +.+.. +...++..++++++++||++|.|++++|.++++.+......
T Consensus 110 ~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~~ 173 (181)
T 3t5g_A 110 VQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILEAEKMDGA 173 (181)
T ss_dssp --CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCTTSHHHHHHHHHHHHHHHHTC---
T ss_pred CCCCEEEEEECccchhcceecHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHHHHhcCC
Confidence 4799999999999974 44443 35678899999999999999999999999999999876543
No 14
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.93 E-value=2.6e-25 Score=160.59 Aligned_cols=136 Identities=26% Similarity=0.487 Sum_probs=114.6
Q ss_pred CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc-C
Q 029875 3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-E 81 (186)
Q Consensus 3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-~ 81 (186)
+...+.||+|.++....+.+++..+.+.+|||||++.+..++..+++++|++|+|||++++.+++.+..|+..+.... .
T Consensus 31 ~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~ 110 (170)
T 1z08_A 31 FNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGN 110 (170)
T ss_dssp CCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGG
T ss_pred CCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC
Confidence 446789999999999999999999999999999999999999999999999999999999999999999999887765 5
Q ss_pred CCCEEEEEeCCCCCC-cccCh-HHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhC
Q 029875 82 NIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG 138 (186)
Q Consensus 82 ~~p~ilv~nK~Dl~~-~~~~~-~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 138 (186)
+.|+++|+||+|+.+ +.+.. +...+++..+++++++||++|.|++++|+++++.+.+
T Consensus 111 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 169 (170)
T 1z08_A 111 EICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIE 169 (170)
T ss_dssp GSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHHHHHHHC
T ss_pred CCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHhh
Confidence 799999999999975 33433 3567888889999999999999999999999998764
No 15
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.93 E-value=5.5e-25 Score=159.98 Aligned_cols=137 Identities=30% Similarity=0.552 Sum_probs=118.2
Q ss_pred CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc--
Q 029875 3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-- 80 (186)
Q Consensus 3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-- 80 (186)
+...+.||+|.++....+.+++..+.+.||||||++.+..++..+++++|++++|||++++.+++.+..|+..+....
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~ 111 (177)
T 1wms_A 32 FDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADV 111 (177)
T ss_dssp CCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTC
T ss_pred CCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccc
Confidence 456789999999999999999999999999999999999999999999999999999999999999999999987764
Q ss_pred ---CCCCEEEEEeCCCCCCcccChH-HHHHHH-HcCCcEEEeccCCCCCchHHHHHHHHHHhCC
Q 029875 81 ---ENIPIVLCGNKVDVKNRQVKAK-QVTFHR-KKNLQYYEISAKSNYNFEKPFLYLARKLAGD 139 (186)
Q Consensus 81 ---~~~p~ilv~nK~Dl~~~~~~~~-~~~~~~-~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 139 (186)
.+.|+++|+||+|+.++....+ ...++. ..+++++++||++|.|++++|+++++.+...
T Consensus 112 ~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 175 (177)
T 1wms_A 112 KEPESFPFVILGNKIDISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLAT 175 (177)
T ss_dssp SCTTTSCEEEEEECTTCSSCSSCHHHHHHHHHHTTCCCEEECCTTTCTTHHHHHHHHHHHHHTC
T ss_pred cccCCCcEEEEEECCcccccccCHHHHHHHHHhcCCceEEEEeCCCCCCHHHHHHHHHHHHHhh
Confidence 5789999999999986555544 456666 5578999999999999999999999998764
No 16
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.93 E-value=1.4e-25 Score=163.22 Aligned_cols=137 Identities=25% Similarity=0.393 Sum_probs=119.5
Q ss_pred CccccccceEEEEEEEEEECC-eEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc--
Q 029875 4 SVWGKATIGVEVHPLDFFTNC-GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-- 80 (186)
Q Consensus 4 ~~~~~~Tig~~~~~~~~~~~~-~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-- 80 (186)
...|.||+|.++....+.+++ ..+.+++|||||++.|..++..+++++|++|+|||++++.+|+.+..|+..+....
T Consensus 32 ~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~ 111 (178)
T 2hxs_A 32 GKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEE 111 (178)
T ss_dssp THHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHH
T ss_pred CCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcc
Confidence 456789999999999998876 67999999999999999999999999999999999999999999999999887753
Q ss_pred -CCCC-EEEEEeCCCCCC-cccCh-HHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCCC
Q 029875 81 -ENIP-IVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDP 140 (186)
Q Consensus 81 -~~~p-~ilv~nK~Dl~~-~~~~~-~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~ 140 (186)
...| +++|+||+|+.+ +.+.. +...++..++++++++||++|.|++++|.++++.+.+..
T Consensus 112 ~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~ 175 (178)
T 2hxs_A 112 SETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEILGIK 175 (178)
T ss_dssp HTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHHHHHTTCC
T ss_pred cCCCCeEEEEEEccccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHHHHHhhh
Confidence 2556 899999999975 33443 355788888999999999999999999999999987654
No 17
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.93 E-value=7.3e-25 Score=159.75 Aligned_cols=135 Identities=27% Similarity=0.512 Sum_probs=113.3
Q ss_pred ccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc-CCC
Q 029875 5 VWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENI 83 (186)
Q Consensus 5 ~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-~~~ 83 (186)
..+.||+|.++....+.+++..+.+++|||||++.|..++..+++++|++|+|||++++.+++.+..|+..+.... .+.
T Consensus 38 ~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~ 117 (180)
T 2g6b_A 38 GTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDV 117 (180)
T ss_dssp CCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTC
T ss_pred CCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCC
Confidence 4688999999999888899999999999999999999999999999999999999999999999999999998876 589
Q ss_pred CEEEEEeCCCCCC-cccCh-HHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCC
Q 029875 84 PIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD 139 (186)
Q Consensus 84 p~ilv~nK~Dl~~-~~~~~-~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 139 (186)
|+++|+||+|+.+ +.+.. +...++..++++++++||++|.|++++|.++.+.+.+.
T Consensus 118 piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 175 (180)
T 2g6b_A 118 ALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELKRR 175 (180)
T ss_dssp EEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHC-
T ss_pred cEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 9999999999975 33333 34578888899999999999999999999999998754
No 18
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.93 E-value=6.5e-25 Score=162.23 Aligned_cols=138 Identities=29% Similarity=0.484 Sum_probs=124.1
Q ss_pred CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc-C
Q 029875 3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-E 81 (186)
Q Consensus 3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-~ 81 (186)
+...+.||++.++....+.+++..+.+.||||||++.+..++..+++.+|++|+|||++++.+|+.+..|+..+.... .
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~ 120 (196)
T 3tkl_A 41 YTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASE 120 (196)
T ss_dssp CCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT
T ss_pred CCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC
Confidence 456789999999999999999999999999999999999999999999999999999999999999999999998875 5
Q ss_pred CCCEEEEEeCCCCCCc-ccCh-HHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCCC
Q 029875 82 NIPIVLCGNKVDVKNR-QVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDP 140 (186)
Q Consensus 82 ~~p~ilv~nK~Dl~~~-~~~~-~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~ 140 (186)
+.|+++|+||+|+.+. .+.. ....++..++++++++||++|.|++++|.+|++.+....
T Consensus 121 ~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i~~~~ 181 (196)
T 3tkl_A 121 NVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRM 181 (196)
T ss_dssp TCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEEECTTTCTTHHHHHHHHHHHHHHHC
T ss_pred CCCEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHHHHHHHh
Confidence 7899999999999753 3333 355788899999999999999999999999999997654
No 19
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.93 E-value=5.7e-25 Score=162.66 Aligned_cols=135 Identities=20% Similarity=0.269 Sum_probs=118.2
Q ss_pred CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHH-HHHHHHHhhcC
Q 029875 3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCE 81 (186)
Q Consensus 3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~-~~~~~~~~~~~ 81 (186)
+...|.||++..+ ...+.+++..+.+.||||+|+++|..++..+++++|++|+|||++++.+|..+. .|+..+....+
T Consensus 43 ~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~ 121 (194)
T 2atx_A 43 FPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAP 121 (194)
T ss_dssp CCCSCCCSSCCCE-EEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHST
T ss_pred CCCCCCCccccee-EEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC
Confidence 4567899999776 456778888999999999999999999999999999999999999999999987 89999988878
Q ss_pred CCCEEEEEeCCCCCCc-------------ccCh-HHHHHHHHcCC-cEEEeccCCCCCchHHHHHHHHHHhC
Q 029875 82 NIPIVLCGNKVDVKNR-------------QVKA-KQVTFHRKKNL-QYYEISAKSNYNFEKPFLYLARKLAG 138 (186)
Q Consensus 82 ~~p~ilv~nK~Dl~~~-------------~~~~-~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~i~~ 138 (186)
+.|+++|+||+|+.+. .+.. +...+++.+++ +++++||++|.||+++|.++++.+..
T Consensus 122 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~ 193 (194)
T 2atx_A 122 NVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAILT 193 (194)
T ss_dssp TCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred CCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCcEEEEeeCCCCCCHHHHHHHHHHHHhc
Confidence 8999999999999752 3333 35578888887 89999999999999999999988753
No 20
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.93 E-value=7.8e-25 Score=163.49 Aligned_cols=138 Identities=29% Similarity=0.473 Sum_probs=123.5
Q ss_pred CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc-C
Q 029875 3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-E 81 (186)
Q Consensus 3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-~ 81 (186)
+...|.||+|.++....+.+++..+.+.||||||+++|..++..+++++|++|+|||++++.+|+.+..|+..+.... .
T Consensus 33 ~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~ 112 (206)
T 2bcg_Y 33 YTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATS 112 (206)
T ss_dssp CCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCT
T ss_pred CCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC
Confidence 456789999999999999999999999999999999999999999999999999999999999999999999998775 5
Q ss_pred CCCEEEEEeCCCCCC-cccCh-HHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCCC
Q 029875 82 NIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDP 140 (186)
Q Consensus 82 ~~p~ilv~nK~Dl~~-~~~~~-~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~ 140 (186)
+.|+++|+||+|+.+ +.+.. ....++..++++++++||++|.||+++|.++.+.+.+..
T Consensus 113 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~~~ 173 (206)
T 2bcg_Y 113 TVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESM 173 (206)
T ss_dssp TCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHHHHHHHHHHHHC
T ss_pred CCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHHH
Confidence 799999999999975 33443 355788888999999999999999999999999987653
No 21
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.93 E-value=3.9e-25 Score=163.38 Aligned_cols=136 Identities=32% Similarity=0.535 Sum_probs=117.3
Q ss_pred CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc-C
Q 029875 3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-E 81 (186)
Q Consensus 3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-~ 81 (186)
+...+.||+|.++....+.+++..+.++||||+|++.|..++..+++++|++|+|||++++.+++.+..|+..+.... .
T Consensus 46 ~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~ 125 (191)
T 2a5j_A 46 FQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSS 125 (191)
T ss_dssp CCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT
T ss_pred CCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC
Confidence 445678999999999999999999999999999999999999999999999999999999999999999999998764 5
Q ss_pred CCCEEEEEeCCCCCC-cccCh-HHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhC
Q 029875 82 NIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG 138 (186)
Q Consensus 82 ~~p~ilv~nK~Dl~~-~~~~~-~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 138 (186)
+.|+++|+||+|+.+ +.+.. +...++..++++++++||++|.||+++|.+|++.+.+
T Consensus 126 ~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 184 (191)
T 2a5j_A 126 NMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYR 184 (191)
T ss_dssp TCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred CCCEEEEEECcccCCccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 899999999999975 33433 3557888889999999999999999999999998864
No 22
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.93 E-value=1.5e-24 Score=159.89 Aligned_cols=136 Identities=24% Similarity=0.482 Sum_probs=121.8
Q ss_pred CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc-C
Q 029875 3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-E 81 (186)
Q Consensus 3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-~ 81 (186)
+...+.||+|.++....+.+++..+.+.||||+|++++..++..+++++|++|+|||++++.+++.+..|+..+.... .
T Consensus 47 ~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~ 126 (189)
T 2gf9_A 47 FTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWD 126 (189)
T ss_dssp CCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT
T ss_pred CCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC
Confidence 456789999999998888889999999999999999999999999999999999999999999999999999998875 5
Q ss_pred CCCEEEEEeCCCCCC-cccCh-HHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhC
Q 029875 82 NIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG 138 (186)
Q Consensus 82 ~~p~ilv~nK~Dl~~-~~~~~-~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 138 (186)
+.|+++|+||+|+.+ +.+.. +...++..++++++++||++|.|++++|.++++.+.+
T Consensus 127 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~ 185 (189)
T 2gf9_A 127 NAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVICE 185 (189)
T ss_dssp TCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred CCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 799999999999975 33333 3567888889999999999999999999999998864
No 23
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.93 E-value=5.3e-25 Score=161.75 Aligned_cols=135 Identities=21% Similarity=0.327 Sum_probs=117.6
Q ss_pred CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhH-HHHHHHHHhhcC
Q 029875 3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCE 81 (186)
Q Consensus 3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i-~~~~~~~~~~~~ 81 (186)
+...|.||++.++. ..+.+++..+.+.||||||++.|..++..++++++++|+|||++++.+|+.+ ..|+..+.+..+
T Consensus 32 ~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~ 110 (184)
T 1m7b_A 32 FPENYVPTVFENYT-ASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP 110 (184)
T ss_dssp CCSSCCCCSEEEEE-EEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT
T ss_pred CCCCCCCccceeEE-EEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHCC
Confidence 45678999998874 5677889999999999999999999999999999999999999999999998 789999988778
Q ss_pred CCCEEEEEeCCCCCC-------------cccChH-HHHHHHHcC-CcEEEeccC-CCCCchHHHHHHHHHHhC
Q 029875 82 NIPIVLCGNKVDVKN-------------RQVKAK-QVTFHRKKN-LQYYEISAK-SNYNFEKPFLYLARKLAG 138 (186)
Q Consensus 82 ~~p~ilv~nK~Dl~~-------------~~~~~~-~~~~~~~~~-~~~~~~Sa~-~~~gi~~l~~~l~~~i~~ 138 (186)
+.|+++|+||+|+.+ +.+..+ ...+++.++ .+++++||+ +|.||+++|..+++.+..
T Consensus 111 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~gi~~l~~~i~~~~l~ 183 (184)
T 1m7b_A 111 NTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVN 183 (184)
T ss_dssp TCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECBTTTBHHHHHHHHHHHHHHHHT
T ss_pred CCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcEEEEeeecCCCcCHHHHHHHHHHHHhc
Confidence 899999999999974 234333 557888877 699999999 689999999999998764
No 24
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.93 E-value=1.1e-24 Score=159.40 Aligned_cols=135 Identities=30% Similarity=0.392 Sum_probs=119.8
Q ss_pred CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc--
Q 029875 3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-- 80 (186)
Q Consensus 3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-- 80 (186)
+...+.||++..+ ...+.+++..+.+.+|||+|++.|..++..+++++|++|+|||++++.+|+.+..|+..+....
T Consensus 43 ~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~ 121 (183)
T 3kkq_A 43 FVDDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDR 121 (183)
T ss_dssp CCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTS
T ss_pred CCCCCCCCcccee-EEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC
Confidence 4567899999888 6778889999999999999999999999999999999999999999999999999999987753
Q ss_pred CCCCEEEEEeCCCCCC-cccChH-HHHHHHHcCCcEEEeccC-CCCCchHHHHHHHHHHhC
Q 029875 81 ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAK-SNYNFEKPFLYLARKLAG 138 (186)
Q Consensus 81 ~~~p~ilv~nK~Dl~~-~~~~~~-~~~~~~~~~~~~~~~Sa~-~~~gi~~l~~~l~~~i~~ 138 (186)
.+.|+++|+||+|+.+ +.+..+ ...++..++++++++||+ +|.|++++|.++++.+.+
T Consensus 122 ~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~v~~l~~~l~~~i~~ 182 (183)
T 3kkq_A 122 ESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQ 182 (183)
T ss_dssp SCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEECCCchhccCcCHHHHHHHHHHhCCeEEEeccCCCCCCHHHHHHHHHHHHhh
Confidence 6799999999999975 444444 568888999999999999 999999999999988754
No 25
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.93 E-value=7.4e-25 Score=157.87 Aligned_cols=135 Identities=32% Similarity=0.560 Sum_probs=120.0
Q ss_pred CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc-C
Q 029875 3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-E 81 (186)
Q Consensus 3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-~ 81 (186)
+...+.||+|.++....+.+++..+.+.+|||||++.|..++..+++++|++|+|||++++.+++.+..|+..+.... +
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~ 110 (170)
T 1r2q_A 31 FHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASP 110 (170)
T ss_dssp CCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCT
T ss_pred CCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC
Confidence 345688999999999999999999999999999999999999999999999999999999999999999999988764 6
Q ss_pred CCCEEEEEeCCCCCC-cccCh-HHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHh
Q 029875 82 NIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLA 137 (186)
Q Consensus 82 ~~p~ilv~nK~Dl~~-~~~~~-~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 137 (186)
+.|+++|+||+|+.+ +.... +...++..++++++++||++|.|++++|.+|.+.+.
T Consensus 111 ~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~i~~~~~ 168 (170)
T 1r2q_A 111 NIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLP 168 (170)
T ss_dssp TCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHTSC
T ss_pred CCcEEEEEECccCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHh
Confidence 899999999999974 33333 355788888999999999999999999999998764
No 26
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.93 E-value=7.4e-25 Score=159.27 Aligned_cols=136 Identities=34% Similarity=0.517 Sum_probs=121.3
Q ss_pred CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc-C
Q 029875 3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-E 81 (186)
Q Consensus 3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-~ 81 (186)
+...+.||+|.++....+.+++..+.+.||||||++.+..++..+++++|++|+|||++++.+++.+..|+..+.... .
T Consensus 40 ~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~ 119 (179)
T 1z0f_A 40 FMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNP 119 (179)
T ss_dssp CCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT
T ss_pred CCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCC
Confidence 456788999999999999999999999999999999999999999999999999999999999999999999988876 6
Q ss_pred CCCEEEEEeCCCCCC-cccCh-HHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhC
Q 029875 82 NIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG 138 (186)
Q Consensus 82 ~~p~ilv~nK~Dl~~-~~~~~-~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 138 (186)
+.|+++|+||+|+.+ +.+.. +..+++..++++++++||++|.|++++|.++++.+.+
T Consensus 120 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 178 (179)
T 1z0f_A 120 NTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQ 178 (179)
T ss_dssp TCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHC-
T ss_pred CCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHhh
Confidence 899999999999974 33333 4567888889999999999999999999999988754
No 27
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.93 E-value=4.9e-25 Score=158.82 Aligned_cols=135 Identities=31% Similarity=0.532 Sum_probs=119.8
Q ss_pred CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc-C
Q 029875 3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-E 81 (186)
Q Consensus 3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-~ 81 (186)
+...+.||+|.++....+.+++..+.+.+|||||++.+..++..+++++|++|+|||++++.++..+..|+..+.... .
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~ 107 (170)
T 1ek0_A 28 FAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASK 107 (170)
T ss_dssp CCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCT
T ss_pred CCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhcCC
Confidence 455788999999999999999999999999999999999999999999999999999999999999999999988775 6
Q ss_pred CCCEEEEEeCCCCCC----cccChH-HHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHh
Q 029875 82 NIPIVLCGNKVDVKN----RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLA 137 (186)
Q Consensus 82 ~~p~ilv~nK~Dl~~----~~~~~~-~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 137 (186)
+.|+++|+||+|+.+ +.+..+ ...++..++++++++||++|.|++++|.++.+.+.
T Consensus 108 ~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 168 (170)
T 1ek0_A 108 DIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKIP 168 (170)
T ss_dssp TCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHHTTSC
T ss_pred CCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHh
Confidence 899999999999974 333333 45778888999999999999999999999987664
No 28
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.93 E-value=8.9e-25 Score=161.24 Aligned_cols=134 Identities=17% Similarity=0.239 Sum_probs=114.0
Q ss_pred CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc--
Q 029875 3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-- 80 (186)
Q Consensus 3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-- 80 (186)
+...|.||+|..+ ...+.+++..+.++||||+|+++|..+ ..++++++++|+|||++++.+|+.+..|+..+....
T Consensus 46 ~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~ 123 (187)
T 3c5c_A 46 FISEYDPNLEDTY-SSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKE 123 (187)
T ss_dssp CCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcccCCCcccee-eEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhc
Confidence 4567899999887 456778999999999999999998875 679999999999999999999999999999988764
Q ss_pred --CCCCEEEEEeCCCCCC-cccCh-HHHHHHHHcCCcEEEecc-CCCCCchHHHHHHHHHHhC
Q 029875 81 --ENIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISA-KSNYNFEKPFLYLARKLAG 138 (186)
Q Consensus 81 --~~~p~ilv~nK~Dl~~-~~~~~-~~~~~~~~~~~~~~~~Sa-~~~~gi~~l~~~l~~~i~~ 138 (186)
.+.|+++|+||+|+.+ +.+.. +..+++..++++++++|| ++|.||+++|..+++.+.+
T Consensus 124 ~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~g~gv~~lf~~l~~~i~~ 186 (187)
T 3c5c_A 124 TQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFHEAVREARR 186 (187)
T ss_dssp HCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECCSSSCSHHHHHHHHHHHHHHHC
T ss_pred cCCCCCEEEEEECcchhhcCccCHHHHHHHHHHcCCcEEEEeecCccccHHHHHHHHHHHHhh
Confidence 6899999999999975 44443 356888899999999999 8999999999999988753
No 29
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.93 E-value=7.5e-25 Score=159.81 Aligned_cols=137 Identities=32% Similarity=0.536 Sum_probs=120.8
Q ss_pred CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc-C
Q 029875 3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-E 81 (186)
Q Consensus 3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-~ 81 (186)
+...+.||+|.++....+.+++..+.+.||||||+++|..++..+++++|++|+|||++++.+|+.+..|+..+.... +
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~ 116 (181)
T 2efe_B 37 FVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNP 116 (181)
T ss_dssp CTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCT
T ss_pred CCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC
Confidence 455678999999999999999999999999999999999999999999999999999999999999999999998875 5
Q ss_pred CCCEEEEEeCCCCCC-cccCh-HHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCC
Q 029875 82 NIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD 139 (186)
Q Consensus 82 ~~p~ilv~nK~Dl~~-~~~~~-~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 139 (186)
+.|+++|+||+|+.+ +.+.. +...++..++++++++||++|.|++++|.+|++.+...
T Consensus 117 ~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~ 176 (181)
T 2efe_B 117 NMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARRLPRV 176 (181)
T ss_dssp TCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCSSSCTTHHHHHHHHHHTCC--
T ss_pred CCcEEEEEECCcccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 899999999999974 33333 35578888899999999999999999999999887654
No 30
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.93 E-value=1e-24 Score=162.39 Aligned_cols=137 Identities=25% Similarity=0.493 Sum_probs=122.5
Q ss_pred CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc-C
Q 029875 3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-E 81 (186)
Q Consensus 3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-~ 81 (186)
+...+.||+|.++....+.+++..+.+.||||||++++..++..+++++|++|+|||++++.+|+.+..|+..+.... .
T Consensus 33 ~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~ 112 (203)
T 1zbd_A 33 FTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWD 112 (203)
T ss_dssp CCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCS
T ss_pred CCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC
Confidence 456789999999999999999999999999999999999999999999999999999999999999999999998875 5
Q ss_pred CCCEEEEEeCCCCCC-cccCh-HHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCC
Q 029875 82 NIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD 139 (186)
Q Consensus 82 ~~p~ilv~nK~Dl~~-~~~~~-~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 139 (186)
+.|+++|+||+|+.+ +.+.. ....++..++++++++||++|.|++++|.+|++.+.+.
T Consensus 113 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 172 (203)
T 1zbd_A 113 NAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEK 172 (203)
T ss_dssp SCEEEEEEECTTCTTSCCSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHHHHHHHHH
T ss_pred CCCEEEEEECcccCcccccCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 799999999999975 33433 35578888899999999999999999999999988654
No 31
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.93 E-value=1.5e-24 Score=161.26 Aligned_cols=136 Identities=21% Similarity=0.280 Sum_probs=114.0
Q ss_pred CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHH-HHHHHHHhhcC
Q 029875 3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCE 81 (186)
Q Consensus 3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~-~~~~~~~~~~~ 81 (186)
+...|.||++..+ ...+.+++..+.++||||+|+++|..++..+++++|++|+|||++++.+|..+. .|+..+....+
T Consensus 45 ~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~ 123 (201)
T 2q3h_A 45 YPTEYIPTAFDNF-SAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCP 123 (201)
T ss_dssp ------CCSSEEE-EEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCS
T ss_pred CCCCCCCccccee-EEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCC
Confidence 3467889998766 456778999999999999999999999999999999999999999999999986 79999988878
Q ss_pred CCCEEEEEeCCCCCC-------------cccCh-HHHHHHHHcCC-cEEEeccCCCCCchHHHHHHHHHHhCC
Q 029875 82 NIPIVLCGNKVDVKN-------------RQVKA-KQVTFHRKKNL-QYYEISAKSNYNFEKPFLYLARKLAGD 139 (186)
Q Consensus 82 ~~p~ilv~nK~Dl~~-------------~~~~~-~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 139 (186)
+.|+++|+||+|+.+ +.+.. +...++..++. +++++||++|.||+++|.++++.+.+.
T Consensus 124 ~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~ 196 (201)
T 2q3h_A 124 KAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVFDAAIVAGIQY 196 (201)
T ss_dssp SSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCcEEEEEecCCCCCHHHHHHHHHHHHhcc
Confidence 999999999999974 22333 34577788887 899999999999999999999988643
No 32
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.93 E-value=1.7e-24 Score=161.45 Aligned_cols=137 Identities=36% Similarity=0.610 Sum_probs=121.2
Q ss_pred CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc--
Q 029875 3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-- 80 (186)
Q Consensus 3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-- 80 (186)
+...|.||+|.++....+.+++..+.+.||||||++.+..++..+++++|++|+|||++++.+|..+..|+..+....
T Consensus 33 ~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~ 112 (207)
T 1vg8_A 33 FSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASP 112 (207)
T ss_dssp CCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCC
T ss_pred CCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhccc
Confidence 456789999999999999999999999999999999999999999999999999999999999999999999887764
Q ss_pred ---CCCCEEEEEeCCCCCCcccChH-HHHHHH-HcCCcEEEeccCCCCCchHHHHHHHHHHhCC
Q 029875 81 ---ENIPIVLCGNKVDVKNRQVKAK-QVTFHR-KKNLQYYEISAKSNYNFEKPFLYLARKLAGD 139 (186)
Q Consensus 81 ---~~~p~ilv~nK~Dl~~~~~~~~-~~~~~~-~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 139 (186)
.+.|+++|+||+|+.++....+ ...++. ..+++++++||++|.|++++|.+|++.+...
T Consensus 113 ~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~ 176 (207)
T 1vg8_A 113 RDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQ 176 (207)
T ss_dssp SSGGGSCEEEEEECTTSSCCCSCHHHHHHHHHHTTSCCEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred ccCCCCcEEEEEECCCCcccccCHHHHHHHHHhcCCceEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 4789999999999986555444 446666 5678999999999999999999999998754
No 33
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.93 E-value=5.4e-25 Score=165.03 Aligned_cols=137 Identities=24% Similarity=0.389 Sum_probs=117.1
Q ss_pred CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHH-HHHHHHHhhcC
Q 029875 3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCE 81 (186)
Q Consensus 3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~-~~~~~~~~~~~ 81 (186)
+...|.||+|..+ ...+.+++..+.++||||||+++|..++..+++++|++|+|||++++.+|+.+. .|+..+....+
T Consensus 34 ~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~ 112 (212)
T 2j0v_A 34 FPTDYIPTVFDNF-SANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAP 112 (212)
T ss_dssp CCSSCCCSSCCCE-EEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT
T ss_pred CCccCCCccceeE-EEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC
Confidence 4567899999776 456778899999999999999999999999999999999999999999999986 89999988877
Q ss_pred CCCEEEEEeCCCCCCccc---------C-hHHHHHHHHcCC-cEEEeccCCCCCchHHHHHHHHHHhCCC
Q 029875 82 NIPIVLCGNKVDVKNRQV---------K-AKQVTFHRKKNL-QYYEISAKSNYNFEKPFLYLARKLAGDP 140 (186)
Q Consensus 82 ~~p~ilv~nK~Dl~~~~~---------~-~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~i~~~~ 140 (186)
+.|++||+||+|+.+... . .+...++..++. +++++||++|.||+++|.++++.+.+..
T Consensus 113 ~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~ 182 (212)
T 2j0v_A 113 NVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPP 182 (212)
T ss_dssp TCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEECCTTTCTTHHHHHHHHHHHHHCC-
T ss_pred CCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceEEEccCCCCCCHHHHHHHHHHHHhhhh
Confidence 899999999999975321 2 335577888886 8999999999999999999999998764
No 34
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.93 E-value=1.1e-24 Score=161.96 Aligned_cols=136 Identities=22% Similarity=0.264 Sum_probs=119.0
Q ss_pred ccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCC-ccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc--C
Q 029875 5 VWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG-LRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--E 81 (186)
Q Consensus 5 ~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~-~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~--~ 81 (186)
..+.||++.++....+.+++..+.+.+|||+|++++.. ++..++++++++|+|||++++.+|+.+..|+..+.... .
T Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~ 129 (195)
T 3cbq_A 50 SAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHH 129 (195)
T ss_dssp GGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTS
T ss_pred ccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC
Confidence 35678888888888889999999999999999998765 78888999999999999999999999999999988765 4
Q ss_pred CCCEEEEEeCCCCCC-cccCh-HHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCCC
Q 029875 82 NIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDP 140 (186)
Q Consensus 82 ~~p~ilv~nK~Dl~~-~~~~~-~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~ 140 (186)
+.|+++|+||+|+.+ +.+.. +...++..++++++++||++|.||+++|.++++.+....
T Consensus 130 ~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~lf~~l~~~i~~~~ 190 (195)
T 3cbq_A 130 DLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQIRLRR 190 (195)
T ss_dssp CCCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHHHHHHHTTC
T ss_pred CCCEEEEeechhccccCCcCHHHHHHHHHHhCCEEEEEcCCCCCCHHHHHHHHHHHHHHhc
Confidence 799999999999975 44443 355788888999999999999999999999999987543
No 35
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.93 E-value=9e-25 Score=165.41 Aligned_cols=139 Identities=29% Similarity=0.490 Sum_probs=114.9
Q ss_pred CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc-C
Q 029875 3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-E 81 (186)
Q Consensus 3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-~ 81 (186)
+...+.||+|.++....+.+++..+.+.||||||+++|..++..++++++++|+|||++++.+|+.+..|+..+.... .
T Consensus 38 ~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~ 117 (223)
T 3cpj_B 38 FNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADD 117 (223)
T ss_dssp CCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC-
T ss_pred CCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCC
Confidence 456788999999999999999999999999999999999999999999999999999999999999999999998764 5
Q ss_pred CCCEEEEEeCCCCCC-cccCh-HHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCCCC
Q 029875 82 NIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPN 141 (186)
Q Consensus 82 ~~p~ilv~nK~Dl~~-~~~~~-~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~ 141 (186)
+.|++||+||+|+.+ +.+.. +...++..++++++++||++|.||+++|.+|++.+.+...
T Consensus 118 ~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~ 179 (223)
T 3cpj_B 118 NVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINTIYQKVS 179 (223)
T ss_dssp -CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTCEEEECCCC-CCCHHHHHHHHHHHHTTCC-
T ss_pred CCeEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Confidence 789999999999975 33443 3557888889999999999999999999999999987543
No 36
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.93 E-value=2.1e-24 Score=161.55 Aligned_cols=137 Identities=28% Similarity=0.474 Sum_probs=122.6
Q ss_pred CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc-C
Q 029875 3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-E 81 (186)
Q Consensus 3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-~ 81 (186)
+...+.||+|.++....+.+++..+.+.||||||++.|..++..+++++|++|+|||++++.+|+.+..|+..+.... .
T Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~ 124 (213)
T 3cph_A 45 FNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHAND 124 (213)
T ss_dssp CCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTT
T ss_pred CCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC
Confidence 456789999999999999999999999999999999999999999999999999999999999999999999988775 4
Q ss_pred CCCEEEEEeCCCCCCcccChH-HHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCC
Q 029875 82 NIPIVLCGNKVDVKNRQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD 139 (186)
Q Consensus 82 ~~p~ilv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 139 (186)
+.|+++|+||+|+..+.+..+ ...++..++++++++||++|.||+++|.+|.+.+.+.
T Consensus 125 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 183 (213)
T 3cph_A 125 EAQLLLVGNKSDMETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEK 183 (213)
T ss_dssp CSEEEEEEECTTCSSCCSCHHHHHHHHHHHTCCEEECBTTTTBSSHHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCcccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 789999999999965555444 4578888899999999999999999999999988654
No 37
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.93 E-value=1.4e-24 Score=159.11 Aligned_cols=137 Identities=33% Similarity=0.548 Sum_probs=122.2
Q ss_pred CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc-C
Q 029875 3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-E 81 (186)
Q Consensus 3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-~ 81 (186)
+...+.||+|.++....+.+++..+.+.||||||++.+..++..+++++|++|+|||++++.+++.+..|+..+.... .
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~ 114 (186)
T 2bme_A 35 FKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQ 114 (186)
T ss_dssp CCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT
T ss_pred CCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC
Confidence 456788999999999999999999999999999999999999999999999999999999999999999999887764 6
Q ss_pred CCCEEEEEeCCCCCC-cccC-hHHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCC
Q 029875 82 NIPIVLCGNKVDVKN-RQVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD 139 (186)
Q Consensus 82 ~~p~ilv~nK~Dl~~-~~~~-~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 139 (186)
+.|+++|+||+|+.+ +.+. .+...++...+++++++||++|.|++++|.++++.+...
T Consensus 115 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 174 (186)
T 2bme_A 115 NIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILNK 174 (186)
T ss_dssp TCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHHHH
Confidence 899999999999974 3343 335578888899999999999999999999999988753
No 38
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.93 E-value=9.5e-25 Score=163.67 Aligned_cols=135 Identities=21% Similarity=0.327 Sum_probs=117.3
Q ss_pred CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhH-HHHHHHHHhhcC
Q 029875 3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCE 81 (186)
Q Consensus 3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i-~~~~~~~~~~~~ 81 (186)
+...|.||++.++. +.+.+++..+.+.||||+|+++|..++..++++++++|+|||++++.+|+.+ ..|+..+.+..+
T Consensus 53 ~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~ 131 (205)
T 1gwn_A 53 FPENYVPTVFENYT-ASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP 131 (205)
T ss_dssp CCSSCCCCSEEEEE-EEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT
T ss_pred CCCCcCCccceeEE-EEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCC
Confidence 45678999998874 5677888999999999999999999999999999999999999999999998 789999988878
Q ss_pred CCCEEEEEeCCCCCC-------------cccChH-HHHHHHHcC-CcEEEeccC-CCCCchHHHHHHHHHHhC
Q 029875 82 NIPIVLCGNKVDVKN-------------RQVKAK-QVTFHRKKN-LQYYEISAK-SNYNFEKPFLYLARKLAG 138 (186)
Q Consensus 82 ~~p~ilv~nK~Dl~~-------------~~~~~~-~~~~~~~~~-~~~~~~Sa~-~~~gi~~l~~~l~~~i~~ 138 (186)
+.|+++|+||+|+.+ +.+..+ ...+++.++ .++++|||+ +|.||+++|..+++.+..
T Consensus 132 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~gv~~lf~~l~~~~l~ 204 (205)
T 1gwn_A 132 NTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVN 204 (205)
T ss_dssp TCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECCTTTCHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcCCCEEEEeeeccCCcCHHHHHHHHHHHHhh
Confidence 899999999999974 233333 557888877 699999999 689999999999988764
No 39
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.93 E-value=9.8e-25 Score=161.45 Aligned_cols=137 Identities=28% Similarity=0.416 Sum_probs=121.1
Q ss_pred CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc-C
Q 029875 3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-E 81 (186)
Q Consensus 3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-~ 81 (186)
+...+.||+|.++....+.+++..+.+.||||||++++..++..+++++|++|+|||++++.+++.+..|+..+.... .
T Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~ 127 (192)
T 2fg5_A 48 FDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPE 127 (192)
T ss_dssp CCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCT
T ss_pred CCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCC
Confidence 345789999999999999889999999999999999999999999999999999999999999999999999998875 5
Q ss_pred CCCEEEEEeCCCCCC-cccCh-HHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCC
Q 029875 82 NIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD 139 (186)
Q Consensus 82 ~~p~ilv~nK~Dl~~-~~~~~-~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 139 (186)
+.|+++|+||+|+.+ +.+.. +..+++...+++++++||++|.|++++|.+|.+.+.+.
T Consensus 128 ~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 187 (192)
T 2fg5_A 128 NIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQIPPL 187 (192)
T ss_dssp TCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTCEEEECBTTTTBSHHHHHHHHHHTCC--
T ss_pred CCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHHHHHHHhh
Confidence 799999999999975 33433 45678888899999999999999999999999887544
No 40
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.92 E-value=9.4e-25 Score=162.41 Aligned_cols=136 Identities=26% Similarity=0.469 Sum_probs=110.5
Q ss_pred CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc-C
Q 029875 3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-E 81 (186)
Q Consensus 3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-~ 81 (186)
+...+.||+|.++....+.+++..+.++||||||++.|..++..+++++|++|+|||++++.+++.+..|+..+.... .
T Consensus 53 ~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~ 132 (199)
T 2p5s_A 53 FRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHE 132 (199)
T ss_dssp CC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC--
T ss_pred CCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCC
Confidence 345688999999999999999999999999999999999999999999999999999999999999999999888765 5
Q ss_pred CCCEEEEEeCCCCCC-------cccChH-HHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhC
Q 029875 82 NIPIVLCGNKVDVKN-------RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG 138 (186)
Q Consensus 82 ~~p~ilv~nK~Dl~~-------~~~~~~-~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 138 (186)
+.|+++|+||+|+.+ +.+..+ ...++..++++++++||++|.||+++|.+|++.+.+
T Consensus 133 ~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gv~el~~~l~~~i~~ 197 (199)
T 2p5s_A 133 TVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLAREVKK 197 (199)
T ss_dssp -CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHHHHHTC
T ss_pred CCCEEEEEECcccccccccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHHHHHHHHh
Confidence 799999999999952 333333 457888889999999999999999999999998864
No 41
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.92 E-value=2.5e-24 Score=155.21 Aligned_cols=135 Identities=27% Similarity=0.466 Sum_probs=120.5
Q ss_pred CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc-C
Q 029875 3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-E 81 (186)
Q Consensus 3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-~ 81 (186)
+...+.||+|.++....+.+++..+.+.+|||||++++..++..+++++|++|+|||++++.+++.+..|+..+.... +
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~ 110 (170)
T 1z0j_A 31 FDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPP 110 (170)
T ss_dssp CCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCT
T ss_pred CCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCC
Confidence 355789999999999999999999999999999999999999999999999999999999999999999999998874 6
Q ss_pred CCCEEEEEeCCCCCC-cccChH-HHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHh
Q 029875 82 NIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLA 137 (186)
Q Consensus 82 ~~p~ilv~nK~Dl~~-~~~~~~-~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 137 (186)
..|+++|+||+|+.+ +.+..+ ...++...+++++++||++|.|++++|.++.+.+.
T Consensus 111 ~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~i~ 168 (170)
T 1z0j_A 111 SIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRIP 168 (170)
T ss_dssp TSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHCC
T ss_pred CCcEEEEEECCccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHHHHHHh
Confidence 899999999999975 334333 55778888999999999999999999999998774
No 42
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.92 E-value=3e-24 Score=157.12 Aligned_cols=137 Identities=23% Similarity=0.398 Sum_probs=118.7
Q ss_pred CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHH-HHHHHHHhhcC
Q 029875 3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCE 81 (186)
Q Consensus 3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~-~~~~~~~~~~~ 81 (186)
+...|.||++..+ ...+.+++..+.+++|||||+++|..++..+++++|++|+|||++++.+|..+. .|+..+....+
T Consensus 30 ~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~ 108 (186)
T 1mh1_A 30 FPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCP 108 (186)
T ss_dssp CCSSCCCCSCCEE-EEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHST
T ss_pred CCCCcCCccccee-EEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCC
Confidence 4567889998766 456778999999999999999999999999999999999999999999999987 79999988777
Q ss_pred CCCEEEEEeCCCCCCc-------------ccCh-HHHHHHHHcCC-cEEEeccCCCCCchHHHHHHHHHHhCCC
Q 029875 82 NIPIVLCGNKVDVKNR-------------QVKA-KQVTFHRKKNL-QYYEISAKSNYNFEKPFLYLARKLAGDP 140 (186)
Q Consensus 82 ~~p~ilv~nK~Dl~~~-------------~~~~-~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~i~~~~ 140 (186)
+.|+++|+||+|+.+. .+.. +...++...+. +++++||++|.|++++|.++.+.+...+
T Consensus 109 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~ 182 (186)
T 1mh1_A 109 NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPP 182 (186)
T ss_dssp TSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHSCCC
T ss_pred CCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEecCCCccCHHHHHHHHHHHHhccc
Confidence 8999999999999642 2232 34567788887 9999999999999999999999997654
No 43
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.92 E-value=2.1e-24 Score=159.46 Aligned_cols=136 Identities=29% Similarity=0.485 Sum_probs=121.2
Q ss_pred CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc-C
Q 029875 3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-E 81 (186)
Q Consensus 3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-~ 81 (186)
+...+.||+|.++....+.+++..+.+.||||||+++|..++..+++++|++|+|||++++.++..+..|+..+.... .
T Consensus 50 ~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~ 129 (193)
T 2oil_A 50 FSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEA 129 (193)
T ss_dssp CCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCT
T ss_pred CCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC
Confidence 455788999999999999999999999999999999999999999999999999999999999999999999988764 5
Q ss_pred CCCEEEEEeCCCCCC-cccC-hHHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhC
Q 029875 82 NIPIVLCGNKVDVKN-RQVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG 138 (186)
Q Consensus 82 ~~p~ilv~nK~Dl~~-~~~~-~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 138 (186)
+.|+++|+||+|+.+ +.+. .+...++...+++++++||++|.|++++|.+|++.+.+
T Consensus 130 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 188 (193)
T 2oil_A 130 TIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFA 188 (193)
T ss_dssp TCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred CCeEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 799999999999975 3333 33557888889999999999999999999999988864
No 44
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.92 E-value=1.1e-24 Score=162.31 Aligned_cols=137 Identities=32% Similarity=0.552 Sum_probs=114.2
Q ss_pred CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc-C
Q 029875 3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-E 81 (186)
Q Consensus 3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-~ 81 (186)
+...+.||+|.++....+.+++..+.+.||||||+++|..++..+++++|++|+|||++++.+++.+..|+..+.... .
T Consensus 50 ~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~ 129 (200)
T 2o52_A 50 FKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASP 129 (200)
T ss_dssp ----------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCT
T ss_pred CCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC
Confidence 345688999999999999999999999999999999999999999999999999999999999999999999987764 5
Q ss_pred CCCEEEEEeCCCCCC-cccC-hHHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCC
Q 029875 82 NIPIVLCGNKVDVKN-RQVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD 139 (186)
Q Consensus 82 ~~p~ilv~nK~Dl~~-~~~~-~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 139 (186)
+.|+++|+||+|+.+ +.+. .+...++...+++++++||++|.||+++|.++++.+...
T Consensus 130 ~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~~ 189 (200)
T 2o52_A 130 NIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTILNK 189 (200)
T ss_dssp TCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 799999999999974 3343 345678888899999999999999999999999988653
No 45
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.92 E-value=9.8e-25 Score=161.56 Aligned_cols=136 Identities=29% Similarity=0.571 Sum_probs=115.9
Q ss_pred CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc-C
Q 029875 3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-E 81 (186)
Q Consensus 3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-~ 81 (186)
+...+.||+|.++....+.+++..+.+.||||+|++++..++..+++++|++|+|||++++.+++.+..|+..+.... .
T Consensus 51 ~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~ 130 (192)
T 2il1_A 51 FCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASE 130 (192)
T ss_dssp ------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT
T ss_pred CCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC
Confidence 345688999999999999999999999999999999999999999999999999999999999999999999888775 4
Q ss_pred CCCEEEEEeCCCCCC-cccChH-HHHHHHHc-CCcEEEeccCCCCCchHHHHHHHHHHhC
Q 029875 82 NIPIVLCGNKVDVKN-RQVKAK-QVTFHRKK-NLQYYEISAKSNYNFEKPFLYLARKLAG 138 (186)
Q Consensus 82 ~~p~ilv~nK~Dl~~-~~~~~~-~~~~~~~~-~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 138 (186)
+.|+++|+||+|+.+ +.+..+ ...+++.. +++++++||++|.||+++|.+|.+.+.+
T Consensus 131 ~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~ 190 (192)
T 2il1_A 131 DAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILK 190 (192)
T ss_dssp TCEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred CCcEEEEEECcccccccccCHHHHHHHHHhcCCCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 799999999999975 344433 45677764 7899999999999999999999998864
No 46
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.92 E-value=2e-24 Score=156.98 Aligned_cols=136 Identities=29% Similarity=0.507 Sum_probs=120.1
Q ss_pred CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc-C
Q 029875 3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-E 81 (186)
Q Consensus 3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-~ 81 (186)
+...+.||+|.++....+.+++..+.+.+|||||++.+..++..+++++|++|+|||++++.++..+..|+..+.... .
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~ 118 (179)
T 2y8e_A 39 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGS 118 (179)
T ss_dssp CCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTT
T ss_pred CCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC
Confidence 456789999999999999999999999999999999999999999999999999999999999999999999987764 5
Q ss_pred CCCEEEEEeCCCCCC-cccCh-HHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhC
Q 029875 82 NIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG 138 (186)
Q Consensus 82 ~~p~ilv~nK~Dl~~-~~~~~-~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 138 (186)
+.|+++|+||+|+.+ +.+.. +...++...+++++++||++|.|++++|.++.+.+.+
T Consensus 119 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 177 (179)
T 2y8e_A 119 DVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPG 177 (179)
T ss_dssp SSEEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHHHHHTCC-
T ss_pred CCcEEEEEECCcccccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHhh
Confidence 799999999999974 33333 3457778889999999999999999999999987643
No 47
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.92 E-value=4.9e-25 Score=164.16 Aligned_cols=136 Identities=23% Similarity=0.335 Sum_probs=100.5
Q ss_pred CCccccccceEEEEEEEEEECCe--EEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc
Q 029875 3 VSVWGKATIGVEVHPLDFFTNCG--KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC 80 (186)
Q Consensus 3 ~~~~~~~Tig~~~~~~~~~~~~~--~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~ 80 (186)
+...|.||+|.++....+.+++. .+.+.||||||++.|..++..+++++|++|+|||++++.+|+.+..|+..+....
T Consensus 47 ~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~ 126 (208)
T 2yc2_C 47 FLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSAR 126 (208)
T ss_dssp --------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHC
T ss_pred ccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhh
Confidence 45678999999999999998887 8999999999999999999999999999999999999999999999999998875
Q ss_pred C----CCCEEEEEeCCCCCC--cccC-hHHHHHHHHcCCcEEEeccCC-CCCchHHHHHHHHHHhC
Q 029875 81 E----NIPIVLCGNKVDVKN--RQVK-AKQVTFHRKKNLQYYEISAKS-NYNFEKPFLYLARKLAG 138 (186)
Q Consensus 81 ~----~~p~ilv~nK~Dl~~--~~~~-~~~~~~~~~~~~~~~~~Sa~~-~~gi~~l~~~l~~~i~~ 138 (186)
. +.|+++|+||+|+.+ +.+. .+...++..++++++++||++ |.|++++|.++++.+.+
T Consensus 127 ~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~gi~~l~~~i~~~~~~ 192 (208)
T 2yc2_C 127 PDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGKDADAPFLSIATTFYR 192 (208)
T ss_dssp SCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTTCEEEECCC-------CHHHHHHHHHHHH
T ss_pred cccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcCCEEEEeccCCCCcCHHHHHHHHHHHHHH
Confidence 4 799999999999976 3444 345688888999999999999 99999999999998864
No 48
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.92 E-value=4.4e-24 Score=159.09 Aligned_cols=135 Identities=24% Similarity=0.390 Sum_probs=117.4
Q ss_pred CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhH-HHHHHHHHhhcC
Q 029875 3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCE 81 (186)
Q Consensus 3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i-~~~~~~~~~~~~ 81 (186)
+...|.||++.++.. .+.+++..+.+.||||||+++|..++..+++++|++|+|||++++.+|+.+ ..|+..+....+
T Consensus 50 ~~~~~~~t~~~~~~~-~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~ 128 (201)
T 2gco_A 50 FPEVYVPTVFENYIA-DIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP 128 (201)
T ss_dssp CCSSCCCSSCCCCEE-EEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHST
T ss_pred CCcccCCcccceEEE-EEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC
Confidence 456789999988864 467889999999999999999999999999999999999999999999998 689998888777
Q ss_pred CCCEEEEEeCCCCCCc-------------ccCh-HHHHHHHHcCC-cEEEeccCCCCCchHHHHHHHHHHhC
Q 029875 82 NIPIVLCGNKVDVKNR-------------QVKA-KQVTFHRKKNL-QYYEISAKSNYNFEKPFLYLARKLAG 138 (186)
Q Consensus 82 ~~p~ilv~nK~Dl~~~-------------~~~~-~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~i~~ 138 (186)
+.|+++|+||+|+.+. .+.. +...++...+. +++++||++|.||+++|.++.+.+.+
T Consensus 129 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~i~~~~l~ 200 (201)
T 2gco_A 129 NVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATRAGLQ 200 (201)
T ss_dssp TCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred CCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEEeeCCCCCCHHHHHHHHHHHHhc
Confidence 8999999999999753 2333 34577788887 89999999999999999999988754
No 49
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.92 E-value=1.6e-24 Score=159.65 Aligned_cols=136 Identities=29% Similarity=0.521 Sum_probs=117.4
Q ss_pred CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccC-CccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc-
Q 029875 3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFG-GLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC- 80 (186)
Q Consensus 3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~-~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~- 80 (186)
+...+.||+|.++....+.+++..+.+.||||||+++|. .++..+++++|++|+|||++++.+|+.+..|+..+....
T Consensus 45 ~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~ 124 (189)
T 1z06_A 45 FPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLL 124 (189)
T ss_dssp CCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCC
T ss_pred CCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC
Confidence 456788999999999999999999999999999999998 889999999999999999999999999999999998874
Q ss_pred -CCCCEEEEEeCCCCCC-cccChH-HHHHHHHcCCcEEEeccCCC---CCchHHHHHHHHHHhC
Q 029875 81 -ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSN---YNFEKPFLYLARKLAG 138 (186)
Q Consensus 81 -~~~p~ilv~nK~Dl~~-~~~~~~-~~~~~~~~~~~~~~~Sa~~~---~gi~~l~~~l~~~i~~ 138 (186)
.+.|+++|+||+|+.+ +.+..+ ...++..++++++++||++| .||+++|.+|++.+.+
T Consensus 125 ~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~i~~l~~~l~~~i~~ 188 (189)
T 1z06_A 125 ANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKLKS 188 (189)
T ss_dssp CSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSCHHHHHHHHC-----
T ss_pred CCCCCEEEEEECccccccceeCHHHHHHHHHHcCCEEEEEeCCcCCcccCHHHHHHHHHHHHhh
Confidence 5799999999999975 334333 55788888999999999999 9999999999887643
No 50
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.92 E-value=3.5e-24 Score=155.98 Aligned_cols=137 Identities=28% Similarity=0.419 Sum_probs=119.4
Q ss_pred CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc--
Q 029875 3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-- 80 (186)
Q Consensus 3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-- 80 (186)
+...+.||++..+. ..+.+++..+.+.||||||+++|..++..++++++++++|||++++.++..+..|+..+.+..
T Consensus 34 ~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~ 112 (181)
T 2fn4_A 34 FVSDYDPTIEDSYT-KICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDR 112 (181)
T ss_dssp CCSSCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTS
T ss_pred CccccCCCcCceEE-EEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCC
Confidence 45678999998887 677889999999999999999999999999999999999999999999999999999885543
Q ss_pred CCCCEEEEEeCCCCCC-cccChH-HHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCCC
Q 029875 81 ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDP 140 (186)
Q Consensus 81 ~~~p~ilv~nK~Dl~~-~~~~~~-~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~ 140 (186)
.+.|+++|+||+|+.+ +.+..+ ...++...+++++++||++|.|++++|++|.+.+.+..
T Consensus 113 ~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~~ 174 (181)
T 2fn4_A 113 DDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAVRKYQ 174 (181)
T ss_dssp SCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHHHHHT
T ss_pred CCCCEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHhh
Confidence 5799999999999975 344333 55778888999999999999999999999999987543
No 51
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.92 E-value=1.8e-25 Score=165.23 Aligned_cols=137 Identities=23% Similarity=0.481 Sum_probs=122.8
Q ss_pred CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc-C
Q 029875 3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-E 81 (186)
Q Consensus 3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-~ 81 (186)
+...+.||+|.++....+.+++..+.+.||||+|++.|..++..+++++|++|+|||++++.+|+.+..|+..+.... .
T Consensus 48 ~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~ 127 (191)
T 3dz8_A 48 FTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWD 127 (191)
T ss_dssp TCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCT
T ss_pred CCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC
Confidence 456788999999999999999999999999999999999999999999999999999999999999999999998876 6
Q ss_pred CCCEEEEEeCCCCCC-cccChH-HHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCC
Q 029875 82 NIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD 139 (186)
Q Consensus 82 ~~p~ilv~nK~Dl~~-~~~~~~-~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 139 (186)
+.|+++|+||+|+.+ +.+..+ ...++..++++++++||++|.||+++|.++++.+.+.
T Consensus 128 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 187 (191)
T 3dz8_A 128 NAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDAICDK 187 (191)
T ss_dssp TCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 899999999999975 333333 5578888899999999999999999999999988654
No 52
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.92 E-value=3.4e-24 Score=154.64 Aligned_cols=135 Identities=21% Similarity=0.261 Sum_probs=106.0
Q ss_pred CccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCC-ccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcC-
Q 029875 4 SVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG-LRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE- 81 (186)
Q Consensus 4 ~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~-~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~- 81 (186)
...+.+|.+.++....+.+++..+.+.+|||+|++++.. ++..+++++|++++|||++++.+|+.+..|+..+.....
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~ 107 (169)
T 3q85_A 28 DHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPH 107 (169)
T ss_dssp ----------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTT
T ss_pred cccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEEEEECCChHHHHHHHHHHHHHHhcccC
Confidence 345567777888888999999999999999999999876 788889999999999999999999999999999988764
Q ss_pred -CCCEEEEEeCCCCCC-cccChH-HHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhC
Q 029875 82 -NIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG 138 (186)
Q Consensus 82 -~~p~ilv~nK~Dl~~-~~~~~~-~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 138 (186)
+.|+++|+||+|+.+ +.+..+ ...++..++++++++||++|.|++++|.++++.+..
T Consensus 108 ~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i~~ 167 (169)
T 3q85_A 108 HDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQIRL 167 (169)
T ss_dssp SCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeeCcchhhcccCCHHHHHHHHHHcCCcEEEecCccCCCHHHHHHHHHHHHHh
Confidence 899999999999974 444444 557888999999999999999999999999998754
No 53
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.92 E-value=5.4e-24 Score=157.55 Aligned_cols=135 Identities=30% Similarity=0.450 Sum_probs=117.6
Q ss_pred CCccccccceEEEEEEEEEECCeE-------------------------------------EEEEEEeCCCccccCCccc
Q 029875 3 VSVWGKATIGVEVHPLDFFTNCGK-------------------------------------IRFYCWDTAGQEKFGGLRD 45 (186)
Q Consensus 3 ~~~~~~~Tig~~~~~~~~~~~~~~-------------------------------------~~l~l~Dt~G~~~~~~~~~ 45 (186)
+...+.||+|.++....+.+++.. +.+.||||||++.|..++.
T Consensus 32 ~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 111 (208)
T 3clv_A 32 FHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVP 111 (208)
T ss_dssp CCSSCCCCCSCEEEEEEEETTC-------------------------------CCCTTTCEEEEEEEECTTGGGCTTTHH
T ss_pred CCCCcCccccceeEEEEEEecCccccccccccccccccccccccccccccccccccCccceeEEEEEECCCcHHHHHHHH
Confidence 456789999999999888887766 8999999999999999999
Q ss_pred cccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCcccCh-HHHHHHHHcCCcEEEeccCCCCC
Q 029875 46 GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA-KQVTFHRKKNLQYYEISAKSNYN 124 (186)
Q Consensus 46 ~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~Sa~~~~g 124 (186)
.+++.+|++|+|||++++.++..+..|+..+..... .|+++|+||+|+..+.... +..+++..++++++++||++|.|
T Consensus 112 ~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~-~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 190 (208)
T 3clv_A 112 LYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSN-YIIILVANKIDKNKFQVDILEVQKYAQDNNLLFIQTSAKTGTN 190 (208)
T ss_dssp HHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC-CEEEEEEECTTCC-CCSCHHHHHHHHHHTTCEEEEECTTTCTT
T ss_pred HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCC-CcEEEEEECCCcccccCCHHHHHHHHHHcCCcEEEEecCCCCC
Confidence 999999999999999999999999999999987654 9999999999954445543 45678888999999999999999
Q ss_pred chHHHHHHHHHHhC
Q 029875 125 FEKPFLYLARKLAG 138 (186)
Q Consensus 125 i~~l~~~l~~~i~~ 138 (186)
++++|.++.+.+.+
T Consensus 191 i~~l~~~l~~~~~~ 204 (208)
T 3clv_A 191 IKNIFYMLAEEIYK 204 (208)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999988754
No 54
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.92 E-value=3.5e-24 Score=157.58 Aligned_cols=137 Identities=28% Similarity=0.494 Sum_probs=120.1
Q ss_pred CCccccccceEEEE-EEEEEECCe---------EEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHH
Q 029875 3 VSVWGKATIGVEVH-PLDFFTNCG---------KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTW 72 (186)
Q Consensus 3 ~~~~~~~Tig~~~~-~~~~~~~~~---------~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~ 72 (186)
+...+.||+|.++. .+.+.+++. .+.+.||||||++.+..++..+++++|++|+|||++++.++..+..|
T Consensus 36 ~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~ 115 (195)
T 3bc1_A 36 FNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNW 115 (195)
T ss_dssp CCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHH
T ss_pred CCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHH
Confidence 45678999999998 677777776 89999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhc--CCCCEEEEEeCCCCCC-cccCh-HHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCC
Q 029875 73 HRDLCRVC--ENIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD 139 (186)
Q Consensus 73 ~~~~~~~~--~~~p~ilv~nK~Dl~~-~~~~~-~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 139 (186)
+..+.... .+.|+++|+||+|+.+ +.+.. ...+++..++++++++||++|.|++++|.+|.+.+.+.
T Consensus 116 ~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~ 186 (195)
T 3bc1_A 116 ISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNISHAIEMLLDLIMKR 186 (195)
T ss_dssp HHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 99998775 5899999999999975 33433 35578888899999999999999999999999988643
No 55
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.92 E-value=2.3e-24 Score=160.57 Aligned_cols=138 Identities=21% Similarity=0.249 Sum_probs=115.5
Q ss_pred CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc--
Q 029875 3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-- 80 (186)
Q Consensus 3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-- 80 (186)
+...|.||++..+ ...+.+++..+.+.||||||++.+..++..+++++|++|+|||++++.+|+.+..|+..+....
T Consensus 49 ~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~ 127 (201)
T 3oes_A 49 FSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGK 127 (201)
T ss_dssp CCSCCCCCSEEEE-EEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC----
T ss_pred CCCCCCCccceEE-EEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCC
Confidence 4567889999888 5677778888999999999999999999999999999999999999999999999999987763
Q ss_pred CCCCEEEEEeCCCCCC-cccCh-HHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCCCC
Q 029875 81 ENIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPN 141 (186)
Q Consensus 81 ~~~p~ilv~nK~Dl~~-~~~~~-~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~ 141 (186)
.+.|+++|+||+|+.+ +.+.. +...++..++++++++||++|.|++++|.+|++.+.+...
T Consensus 128 ~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i~~~~~ 190 (201)
T 3oes_A 128 TRVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGIFTKVIQEIARVEN 190 (201)
T ss_dssp -CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHHHHHHHHHHHHC--
T ss_pred CCCCEEEEEECccCccccccCHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHHHHHHHHhhhh
Confidence 4789999999999974 33443 3557888899999999999999999999999999987643
No 56
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.92 E-value=3.5e-24 Score=161.26 Aligned_cols=137 Identities=23% Similarity=0.389 Sum_probs=100.7
Q ss_pred CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHH-HHHHHHHhhcC
Q 029875 3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCE 81 (186)
Q Consensus 3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~-~~~~~~~~~~~ 81 (186)
+...|.||++..+ ...+.+++..+.+.||||||++.|..++..+++++|++|+|||++++.+|+.+. .|+..+....+
T Consensus 59 ~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~ 137 (214)
T 2j1l_A 59 FPESYTPTVFERY-MVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCK 137 (214)
T ss_dssp -----CCCCCEEE-EEEEEETTEEEEEEEEEC---------------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHCS
T ss_pred CCCCCCCccceeE-EEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCC
Confidence 4567889998766 456778999999999999999999999999999999999999999999999986 79999988878
Q ss_pred CCCEEEEEeCCCCCCc-------------ccCh-HHHHHHHHcCC-cEEEeccCCCCCchHHHHHHHHHHhCCC
Q 029875 82 NIPIVLCGNKVDVKNR-------------QVKA-KQVTFHRKKNL-QYYEISAKSNYNFEKPFLYLARKLAGDP 140 (186)
Q Consensus 82 ~~p~ilv~nK~Dl~~~-------------~~~~-~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~i~~~~ 140 (186)
+.|+++|+||+|+.+. .+.. +...+++.+++ +++++||++|.||+++|.++++.+.+..
T Consensus 138 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~el~~~l~~~~~~~~ 211 (214)
T 2j1l_A 138 KVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQEAAEVALSSR 211 (214)
T ss_dssp SCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECBTTTTBSHHHHHHHHHHHHHHC-
T ss_pred CCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHHHhh
Confidence 8999999999999753 2332 34577888887 8999999999999999999999987553
No 57
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.92 E-value=6.7e-24 Score=152.55 Aligned_cols=134 Identities=29% Similarity=0.445 Sum_probs=116.2
Q ss_pred CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc--
Q 029875 3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-- 80 (186)
Q Consensus 3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-- 80 (186)
+...|.||++..+. ..+.+++..+.+.+|||||++.+..++..++++++++++|||++++.+|+.+..|+..+....
T Consensus 28 ~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~ 106 (167)
T 1c1y_A 28 FVEKYDPTIEDSYR-KQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDT 106 (167)
T ss_dssp CCCSCCCCSEEEEE-EEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCC
T ss_pred CCCCCCCCccceEE-EEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCc
Confidence 45678899997775 567788899999999999999999999999999999999999999999999999999888763
Q ss_pred CCCCEEEEEeCCCCCC-cccCh-HHHHHHHHc-CCcEEEeccCCCCCchHHHHHHHHHHh
Q 029875 81 ENIPIVLCGNKVDVKN-RQVKA-KQVTFHRKK-NLQYYEISAKSNYNFEKPFLYLARKLA 137 (186)
Q Consensus 81 ~~~p~ilv~nK~Dl~~-~~~~~-~~~~~~~~~-~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 137 (186)
.+.|+++|+||+|+.+ +.+.. +...++..+ +.+++++||++|.|++++|.++.+.+.
T Consensus 107 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 166 (167)
T 1c1y_A 107 EDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQIN 166 (167)
T ss_dssp SCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHHHHHHHHT
T ss_pred CCCcEEEEEECccccccccCCHHHHHHHHHHccCCcEEEecCCCCCCHHHHHHHHHHHHh
Confidence 5899999999999975 33333 345777777 789999999999999999999998874
No 58
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.92 E-value=9.2e-24 Score=158.93 Aligned_cols=148 Identities=44% Similarity=0.745 Sum_probs=123.0
Q ss_pred CCccccccceEEEEEEEEEECC-eEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcC
Q 029875 3 VSVWGKATIGVEVHPLDFFTNC-GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE 81 (186)
Q Consensus 3 ~~~~~~~Tig~~~~~~~~~~~~-~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~ 81 (186)
+...+.+|+|..+....+...+ ..+.+.||||+|++.+..++..+++++|++|+|||+++..+++.+..|+..+.....
T Consensus 36 ~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~ 115 (218)
T 4djt_A 36 FEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVG 115 (218)
T ss_dssp TTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHC
T ss_pred CCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC
Confidence 3466789999999888876644 449999999999999999999999999999999999999999999999999988764
Q ss_pred -CCCEEEEEeCCCCCCc-ccChH-HHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCCCCcccccCCCC
Q 029875 82 -NIPIVLCGNKVDVKNR-QVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPAL 150 (186)
Q Consensus 82 -~~p~ilv~nK~Dl~~~-~~~~~-~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~~~~~~~~~~ 150 (186)
+.|+++|+||+|+.+. .+..+ ...++...+++++++||++|.|++++|.++.+.+.+............
T Consensus 116 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~~~~~~~~~~~~ 187 (218)
T 4djt_A 116 NEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLARIFTGRPDLIFVSNVNL 187 (218)
T ss_dssp SSSCEEEEEECTTCC----CCHHHHHHHTTTCCCEEEEEBTTTTBTTTHHHHHHHHHHHCCTTCCBCSCCCC
T ss_pred CCCCEEEEEECCCCccccccCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHhcccccccccccCc
Confidence 5899999999999864 44444 446777788999999999999999999999999988765544443333
No 59
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.92 E-value=1.1e-23 Score=157.73 Aligned_cols=136 Identities=24% Similarity=0.372 Sum_probs=111.9
Q ss_pred CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhH-HHHHHHHHhhcC
Q 029875 3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCE 81 (186)
Q Consensus 3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i-~~~~~~~~~~~~ 81 (186)
+...|.||++.++.. .+.+++..+.+.||||||++++..++..+++++|++|+|||++++.+|+.+ ..|+..+....+
T Consensus 50 ~~~~~~~t~~~~~~~-~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~ 128 (207)
T 2fv8_A 50 FPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCP 128 (207)
T ss_dssp CC-------CCEEEE-EEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHST
T ss_pred CCCcCCCcccceEEE-EEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC
Confidence 455688999988865 467899999999999999999999999999999999999999999999998 689998888778
Q ss_pred CCCEEEEEeCCCCCCc-------------ccCh-HHHHHHHHcCC-cEEEeccCCCCCchHHHHHHHHHHhCC
Q 029875 82 NIPIVLCGNKVDVKNR-------------QVKA-KQVTFHRKKNL-QYYEISAKSNYNFEKPFLYLARKLAGD 139 (186)
Q Consensus 82 ~~p~ilv~nK~Dl~~~-------------~~~~-~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 139 (186)
+.|+++|+||+|+.+. .+.. +...++...+. +++++||++|.||+++|.++.+.+...
T Consensus 129 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~el~~~l~~~i~~~ 201 (207)
T 2fv8_A 129 NVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETATRAALQK 201 (207)
T ss_dssp TCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHHSC
T ss_pred CCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEeeCCCCCCHHHHHHHHHHHHHHH
Confidence 8999999999999753 2232 34567777787 899999999999999999999998754
No 60
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.92 E-value=7.6e-24 Score=155.99 Aligned_cols=130 Identities=16% Similarity=0.301 Sum_probs=110.9
Q ss_pred CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc--
Q 029875 3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-- 80 (186)
Q Consensus 3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-- 80 (186)
+...|.||.+ ++ .+.+.+++..+.++||||+|+++|. +++++|++++|||++++.+|+.+..|+..+....
T Consensus 45 ~~~~~~~t~~-~~-~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~ 117 (184)
T 3ihw_A 45 YVQEESPEGG-RF-KKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNA 117 (184)
T ss_dssp CCCCCCTTCE-EE-EEEEEETTEEEEEEEEECSSSCCHH-----HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSCG
T ss_pred CCCCcCCCcc-eE-EEEEEECCEEEEEEEEECCCChhhh-----eecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC
Confidence 4556888844 44 4788889999999999999998877 8899999999999999999999999999998864
Q ss_pred CCCCEEEEEeCCCCC---CcccChH-HHHHHHHcC-CcEEEeccCCCCCchHHHHHHHHHHhCC
Q 029875 81 ENIPIVLCGNKVDVK---NRQVKAK-QVTFHRKKN-LQYYEISAKSNYNFEKPFLYLARKLAGD 139 (186)
Q Consensus 81 ~~~p~ilv~nK~Dl~---~~~~~~~-~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 139 (186)
.+.|+++|+||+|+. .+.+..+ ..+++..++ ++++++||++|.||+++|.++++.+.+.
T Consensus 118 ~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gv~~lf~~l~~~i~~~ 181 (184)
T 3ihw_A 118 SEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVERVFQDVAQKVVAL 181 (184)
T ss_dssp GGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEBTTTTBTHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEecCCCCCCHHHHHHHHHHHHHHH
Confidence 579999999999994 3444443 557888886 8999999999999999999999988654
No 61
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.92 E-value=6.9e-24 Score=152.31 Aligned_cols=135 Identities=27% Similarity=0.430 Sum_probs=114.8
Q ss_pred CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcC-
Q 029875 3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE- 81 (186)
Q Consensus 3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~- 81 (186)
+...+.||++..+. ..+.+++..+.+.+|||||++++..++..+++.++++++|||++++.++..+..|+..+.....
T Consensus 29 ~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~ 107 (168)
T 1u8z_A 29 FVEDYEPTKADSYR-KKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKED 107 (168)
T ss_dssp CCSCCCTTCCEEEE-EEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCC
T ss_pred cCCCCCCCcceEEE-EEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC
Confidence 45678899997775 4667899999999999999999999999999999999999999999999999999999988753
Q ss_pred -CCCEEEEEeCCCCCC-cccCh-HHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhC
Q 029875 82 -NIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG 138 (186)
Q Consensus 82 -~~p~ilv~nK~Dl~~-~~~~~-~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 138 (186)
+.|+++|+||+|+.+ +.... +...++..++++++++||++|.|++++|+++.+.+.+
T Consensus 108 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 167 (168)
T 1u8z_A 108 ENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREIRA 167 (168)
T ss_dssp TTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred CCCcEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHHHHHHHHh
Confidence 899999999999975 33333 3557888889999999999999999999999998754
No 62
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.91 E-value=4.2e-24 Score=155.66 Aligned_cols=136 Identities=28% Similarity=0.498 Sum_probs=104.7
Q ss_pred CCccccccceEEEEEEEEEEC-CeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc-
Q 029875 3 VSVWGKATIGVEVHPLDFFTN-CGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC- 80 (186)
Q Consensus 3 ~~~~~~~Tig~~~~~~~~~~~-~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~- 80 (186)
+...+.||+|.++....+.++ +..+.+.+|||||++.+..++..+++++|++|+|||++++.+++.+..|+..+....
T Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~ 112 (182)
T 1ky3_A 33 YSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHAN 112 (182)
T ss_dssp CCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHC
T ss_pred CCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhc
Confidence 456788999999998888887 667999999999999999999999999999999999999999999999999887764
Q ss_pred ----CCCCEEEEEeCCCCCC--cccChH-HHHHHH-HcCCcEEEeccCCCCCchHHHHHHHHHHhC
Q 029875 81 ----ENIPIVLCGNKVDVKN--RQVKAK-QVTFHR-KKNLQYYEISAKSNYNFEKPFLYLARKLAG 138 (186)
Q Consensus 81 ----~~~p~ilv~nK~Dl~~--~~~~~~-~~~~~~-~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 138 (186)
.+.|+++|+||+|+.+ +.+..+ ...++. ..+.+++++||++|.|++++|.++.+.+.+
T Consensus 113 ~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 178 (182)
T 1ky3_A 113 VNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQ 178 (182)
T ss_dssp CSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTBSHHHHHHHHHHHHHH
T ss_pred ccCcCCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCeEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 5789999999999963 223333 456666 456899999999999999999999998864
No 63
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.91 E-value=7.6e-25 Score=159.91 Aligned_cols=135 Identities=25% Similarity=0.378 Sum_probs=100.5
Q ss_pred CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHH-HHHHHHHhhcC
Q 029875 3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCE 81 (186)
Q Consensus 3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~-~~~~~~~~~~~ 81 (186)
+...|.||+|..+. ..+.+++..+.++||||||+++|..++..+++++|++++|||++++.+|+.+. .|+..+....+
T Consensus 33 ~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~ 111 (182)
T 3bwd_D 33 FPTDYVPTVFDNFS-ANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAP 111 (182)
T ss_dssp CC----------CB-CCCC-------CEEECCCC-CTTTTTGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT
T ss_pred CCCCCCCeeeeeEE-EEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC
Confidence 45678899987664 34556788899999999999999999999999999999999999999999987 79999988777
Q ss_pred CCCEEEEEeCCCCCCccc-----------C-hHHHHHHHHcCC-cEEEeccCCCCCchHHHHHHHHHHhC
Q 029875 82 NIPIVLCGNKVDVKNRQV-----------K-AKQVTFHRKKNL-QYYEISAKSNYNFEKPFLYLARKLAG 138 (186)
Q Consensus 82 ~~p~ilv~nK~Dl~~~~~-----------~-~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~i~~ 138 (186)
+.|+++|+||+|+.+... . .+..+++..++. +++++||++|.|++++|+++++.+.+
T Consensus 112 ~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 181 (182)
T 3bwd_D 112 GVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAAIRVVLQ 181 (182)
T ss_dssp TCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEECCTTTCTTHHHHHHHHHHHHSC
T ss_pred CCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 899999999999864321 2 334578888886 89999999999999999999988753
No 64
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.91 E-value=1.3e-23 Score=151.10 Aligned_cols=132 Identities=19% Similarity=0.239 Sum_probs=95.4
Q ss_pred cccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc--CCC
Q 029875 6 WGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENI 83 (186)
Q Consensus 6 ~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~--~~~ 83 (186)
.+.||.|..+ ...+.+++..+.+.+|||+|++.+..++..+++.++++++|||++++.+|+.+..|+..+.... .+.
T Consensus 29 ~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~ 107 (166)
T 3q72_A 29 PEAEAAGHTY-DRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDV 107 (166)
T ss_dssp -------CEE-EEEEEETTEEEEEEEEECC---------------CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---CC
T ss_pred CCCCccccce-EEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCC
Confidence 4567788777 4677889999999999999999999999999999999999999999999999999999988763 579
Q ss_pred CEEEEEeCCCCCC-cccChH-HHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhC
Q 029875 84 PIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG 138 (186)
Q Consensus 84 p~ilv~nK~Dl~~-~~~~~~-~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 138 (186)
|+++|+||+|+.+ +.+..+ ...++...+++++++||++|.|++++|.++.+.+..
T Consensus 108 p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 164 (166)
T 3q72_A 108 PIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQIRL 164 (166)
T ss_dssp CEEEEEECTTCCSSCCSCHHHHHHHHHHTTCEEEECBGGGTBSHHHHHHHHHHHHHH
T ss_pred CEEEEEeccccccccccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHHHHHHh
Confidence 9999999999975 444444 457888889999999999999999999999988753
No 65
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.91 E-value=1.3e-23 Score=153.07 Aligned_cols=127 Identities=16% Similarity=0.236 Sum_probs=106.4
Q ss_pred ccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc----CC
Q 029875 7 GKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC----EN 82 (186)
Q Consensus 7 ~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~----~~ 82 (186)
|.||+|..+ .+.+.+++..+.++||||+|+++ ..+++++|++|+|||++++.+|+.+..|++.+.... ++
T Consensus 35 ~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~ 108 (178)
T 2iwr_A 35 LEKTESEQY-KKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGG 108 (178)
T ss_dssp CSSCSSSEE-EEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCC
T ss_pred cCCCcceeE-EEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 789999665 57788899999999999999987 468899999999999999999999999876665542 47
Q ss_pred CCEEEEEeCCCCC---CcccChH-HHHHHHHc-CCcEEEeccCCCCCchHHHHHHHHHHhCC
Q 029875 83 IPIVLCGNKVDVK---NRQVKAK-QVTFHRKK-NLQYYEISAKSNYNFEKPFLYLARKLAGD 139 (186)
Q Consensus 83 ~p~ilv~nK~Dl~---~~~~~~~-~~~~~~~~-~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 139 (186)
.|+++|+||+|+. .+.+..+ ..+++... +++++++||++|.|++++|.++++.+...
T Consensus 109 ~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~ 170 (178)
T 2iwr_A 109 LALALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLNVDRVFQEVAQKVVTL 170 (178)
T ss_dssp CEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEEEEBTTTTBTHHHHHHHHHHHHHHH
T ss_pred CCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEEEEeccccCCHHHHHHHHHHHHHHH
Confidence 8999999999994 3444433 45677765 68999999999999999999999988653
No 66
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.91 E-value=4.4e-24 Score=161.00 Aligned_cols=131 Identities=21% Similarity=0.271 Sum_probs=111.4
Q ss_pred cccceEEEEEEEEEECCeEEEEEEEeCCCccc-cCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc--CCCC
Q 029875 8 KATIGVEVHPLDFFTNCGKIRFYCWDTAGQEK-FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIP 84 (186)
Q Consensus 8 ~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~-~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~--~~~p 84 (186)
.||+|.++..+.+.+++..+.+.+|||+|++. +..++..+++.++++|+|||++++.+|+.+..|...+.+.. .+.|
T Consensus 68 ~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~p 147 (211)
T 2g3y_A 68 CEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIP 147 (211)
T ss_dssp ---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSC
T ss_pred CCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCc
Confidence 46788899888999999999999999999887 56677888999999999999999999999999998887642 5799
Q ss_pred EEEEEeCCCCCC-cccChH-HHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhC
Q 029875 85 IVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG 138 (186)
Q Consensus 85 ~ilv~nK~Dl~~-~~~~~~-~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 138 (186)
++||+||+|+.+ +.+..+ ...++..+++++++|||++|.||+++|.++++.+..
T Consensus 148 iilVgNK~DL~~~r~v~~~e~~~~a~~~~~~~~e~SAk~g~~v~elf~~l~~~i~~ 203 (211)
T 2g3y_A 148 IILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQVRL 203 (211)
T ss_dssp EEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred EEEEEEChHHhcCceEeHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 999999999974 444433 456778889999999999999999999999998853
No 67
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.91 E-value=2.9e-23 Score=152.23 Aligned_cols=136 Identities=25% Similarity=0.402 Sum_probs=116.4
Q ss_pred CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc--
Q 029875 3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-- 80 (186)
Q Consensus 3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-- 80 (186)
+...+.||++. .....+.+++..+.+.||||||++.+..++..+++++|++++|||++++.+|+.+..|+..+....
T Consensus 29 ~~~~~~~t~~~-~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~ 107 (189)
T 4dsu_A 29 FVDEYDPTIED-SYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDS 107 (189)
T ss_dssp CCCCCCTTCCE-EEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCCchh-eEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC
Confidence 34567888864 445677789999999999999999999999999999999999999999999999999999988864
Q ss_pred CCCCEEEEEeCCCCCCcccChH-HHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCC
Q 029875 81 ENIPIVLCGNKVDVKNRQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD 139 (186)
Q Consensus 81 ~~~p~ilv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 139 (186)
.+.|+++|+||+|+.++....+ ...++..++++++++||++|.|++++|.++.+.+...
T Consensus 108 ~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~ 167 (189)
T 4dsu_A 108 EDVPMVLVGNKCDLPSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRKH 167 (189)
T ss_dssp SCCCEEEEEECTTSSSCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEECccCcccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 5799999999999987665554 4578888899999999999999999999999988654
No 68
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.91 E-value=1.5e-24 Score=163.20 Aligned_cols=137 Identities=30% Similarity=0.477 Sum_probs=119.5
Q ss_pred CCccccccceEEEEEEEEEECCe----------EEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHH
Q 029875 3 VSVWGKATIGVEVHPLDFFTNCG----------KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTW 72 (186)
Q Consensus 3 ~~~~~~~Tig~~~~~~~~~~~~~----------~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~ 72 (186)
+...+.||+|.++..+.+.+++. .+.++||||+|+++|..++..+++++|++|+|||++++.+++.+..|
T Consensus 50 ~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~ 129 (217)
T 2f7s_A 50 FNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNW 129 (217)
T ss_dssp CCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHHHHHTTCCEEEEEEETTCHHHHHHHHHH
T ss_pred CCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHH
Confidence 45678899999999888888776 89999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhc--CCCCEEEEEeCCCCCC-cccCh-HHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCC
Q 029875 73 HRDLCRVC--ENIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD 139 (186)
Q Consensus 73 ~~~~~~~~--~~~p~ilv~nK~Dl~~-~~~~~-~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 139 (186)
+..+.... .+.|+++|+||+|+.+ +.+.. +...++..++++++++||++|.||+++|.+|.+.+.+.
T Consensus 130 l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~~ 200 (217)
T 2f7s_A 130 MSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLIMKR 200 (217)
T ss_dssp HHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEEEBTTTTBTHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHHHCCCcEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 98887654 5799999999999975 33433 35578888899999999999999999999999988653
No 69
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.91 E-value=1.3e-23 Score=152.34 Aligned_cols=132 Identities=20% Similarity=0.269 Sum_probs=108.8
Q ss_pred ccccceEEEEEEEEEECCeEEEEEEEeCCCccc--cCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc--CC
Q 029875 7 GKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEK--FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--EN 82 (186)
Q Consensus 7 ~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~--~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~--~~ 82 (186)
..+|+|.++....+.+++..+.+.+|||+|++. +..++..+++.++++++|||++++.+|+.+..|+..+.... .+
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~ 111 (175)
T 2nzj_A 32 LHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADH 111 (175)
T ss_dssp -CCCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC----
T ss_pred ccCccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCC
Confidence 346788888888889999999999999999988 56677888999999999999999999999999999887753 47
Q ss_pred CCEEEEEeCCCCCC-cccChH-HHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhC
Q 029875 83 IPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG 138 (186)
Q Consensus 83 ~p~ilv~nK~Dl~~-~~~~~~-~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 138 (186)
.|+++|+||+|+.+ +.+..+ ...++..++++++++||++|.|++++|.+|++.+..
T Consensus 112 ~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 169 (175)
T 2nzj_A 112 VPIILVGNKADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELFEGVVRQLRL 169 (175)
T ss_dssp CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred CCEEEEEEChhhccccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 99999999999975 444433 457788889999999999999999999999998854
No 70
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.91 E-value=4.1e-23 Score=147.84 Aligned_cols=135 Identities=25% Similarity=0.419 Sum_probs=117.6
Q ss_pred CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcC-
Q 029875 3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE- 81 (186)
Q Consensus 3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~- 81 (186)
+...+.||++..+ ...+.+++..+.+.+|||||++++..++..+++.+|++++|||+++..++..+..|+..+.....
T Consensus 28 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~ 106 (166)
T 2ce2_X 28 FVDECDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDS 106 (166)
T ss_dssp CCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTC
T ss_pred CccccCCccceEE-EEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC
Confidence 3456788888665 45677889999999999999999999999999999999999999999999999999999887753
Q ss_pred -CCCEEEEEeCCCCCCcccChH-HHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhC
Q 029875 82 -NIPIVLCGNKVDVKNRQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG 138 (186)
Q Consensus 82 -~~p~ilv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 138 (186)
+.|+++|+||+|+.++....+ ..+++..++++++++||++|.|++++|.++.+.+.+
T Consensus 107 ~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 165 (166)
T 2ce2_X 107 DDVPMVLVGNKSDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165 (166)
T ss_dssp SCCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCCEEEECTTTCTTHHHHHHHHHHHHHT
T ss_pred CCCcEEEEEEchhhhhcccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHh
Confidence 799999999999987544443 557888889999999999999999999999998754
No 71
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.91 E-value=1.8e-23 Score=155.50 Aligned_cols=136 Identities=27% Similarity=0.428 Sum_probs=119.2
Q ss_pred CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcC-
Q 029875 3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE- 81 (186)
Q Consensus 3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~- 81 (186)
+...|.||++..+. ..+.+++..+.+.||||||++.+..++..++++++++++|||+++..+|..+..|+..+.....
T Consensus 39 ~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~ 117 (206)
T 2bov_A 39 FVEDYEPTKADSYR-KKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKED 117 (206)
T ss_dssp CCTTCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCccceEEE-EEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC
Confidence 45678899997764 5677899999999999999999999999999999999999999999999999999999988753
Q ss_pred -CCCEEEEEeCCCCCC-cccCh-HHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCC
Q 029875 82 -NIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD 139 (186)
Q Consensus 82 -~~p~ilv~nK~Dl~~-~~~~~-~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 139 (186)
+.|+++|+||+|+.+ +.+.. +...++..++++++++||++|.|++++|.++++.+...
T Consensus 118 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~~ 178 (206)
T 2bov_A 118 ENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRAR 178 (206)
T ss_dssp SCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEeccCccccccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHHHHHHHHHc
Confidence 899999999999975 33433 35578888899999999999999999999999998753
No 72
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.91 E-value=5e-25 Score=163.92 Aligned_cols=137 Identities=29% Similarity=0.500 Sum_probs=112.7
Q ss_pred CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc-C
Q 029875 3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-E 81 (186)
Q Consensus 3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-~ 81 (186)
+...+.||++.++....+.+++..+.+.||||+|++.+..++..+++++|++|+|||++++.+|+.+..|+..+.... .
T Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~ 137 (199)
T 3l0i_B 58 YTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASE 137 (199)
T ss_dssp CCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC-C
T ss_pred CCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccC
Confidence 355678999999999999999999999999999999999999999999999999999999999999999999997765 4
Q ss_pred CCCEEEEEeCCCCCCc-ccC-hHHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCC
Q 029875 82 NIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD 139 (186)
Q Consensus 82 ~~p~ilv~nK~Dl~~~-~~~-~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 139 (186)
+.|+++|+||+|+.+. .+. .....++..++++++++||++|.||+++|.+|++.+.+.
T Consensus 138 ~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gv~~l~~~l~~~l~~~ 197 (199)
T 3l0i_B 138 NVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKR 197 (199)
T ss_dssp CSEEEEC-CCSSCC--CCCCSCC-CHHHHTTTCCBCCCCC---HHHHHHHHHHTTTTTTT
T ss_pred CCCEEEEEECccCCccccCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 7999999999999753 333 335578888899999999999999999999998877543
No 73
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.91 E-value=1.5e-23 Score=153.41 Aligned_cols=135 Identities=27% Similarity=0.432 Sum_probs=118.0
Q ss_pred CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcC-
Q 029875 3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE- 81 (186)
Q Consensus 3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~- 81 (186)
+...|.||++..+. ..+.+++..+.+.||||||++.+..++..+++.+|++|+|||++++.++..+..|+..+.....
T Consensus 43 ~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~ 121 (187)
T 2a9k_A 43 FVEDYEPTKADSYR-KKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKED 121 (187)
T ss_dssp CCCSCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCC
T ss_pred CCCcCCCccceEEE-EEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC
Confidence 45678899997774 4667889999999999999999999999999999999999999999999999999999988764
Q ss_pred -CCCEEEEEeCCCCCC-cccCh-HHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhC
Q 029875 82 -NIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG 138 (186)
Q Consensus 82 -~~p~ilv~nK~Dl~~-~~~~~-~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 138 (186)
+.|+++|+||+|+.+ +.+.. +...++..++++++++||++|.|++++|.+|.+.+..
T Consensus 122 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 181 (187)
T 2a9k_A 122 ENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRA 181 (187)
T ss_dssp TTCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Confidence 899999999999975 33333 3557888889999999999999999999999998864
No 74
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.91 E-value=1.4e-23 Score=150.53 Aligned_cols=134 Identities=25% Similarity=0.380 Sum_probs=116.6
Q ss_pred CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc--
Q 029875 3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-- 80 (186)
Q Consensus 3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-- 80 (186)
+...+.||++..+ ...+.+++..+.+.+|||||++.+..++..++++++++++|||++++.+++.+..|+..+....
T Consensus 28 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~ 106 (167)
T 1kao_A 28 FIEKYDPTIEDFY-RKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRY 106 (167)
T ss_dssp CCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTT
T ss_pred CcccCCCCcceeE-EEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCC
Confidence 3456889998655 6778889999999999999999999999999999999999999999999999999999888764
Q ss_pred CCCCEEEEEeCCCCCC-cccChH-HHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHh
Q 029875 81 ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLA 137 (186)
Q Consensus 81 ~~~p~ilv~nK~Dl~~-~~~~~~-~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 137 (186)
.+.|+++|+||+|+.+ +.+... ...++..++++++++||++|.|++++|+++.+.+.
T Consensus 107 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 165 (167)
T 1kao_A 107 EKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQMN 165 (167)
T ss_dssp SCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCcccccccCCHHHHHHHHHHhCCCEEEecCCCCcCHHHHHHHHHHHHh
Confidence 4799999999999864 334333 45788888999999999999999999999998874
No 75
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.91 E-value=3e-23 Score=153.81 Aligned_cols=135 Identities=24% Similarity=0.301 Sum_probs=117.0
Q ss_pred CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc--
Q 029875 3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-- 80 (186)
Q Consensus 3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-- 80 (186)
+...|.||++.++ ...+.+++..+.+.||||||++. ..++..+++.++++|+|||++++.+|+.+..|+..+....
T Consensus 53 ~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~ 130 (196)
T 2atv_A 53 FIWEYDPTLESTY-RHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKP 130 (196)
T ss_dssp CCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTT
T ss_pred CCcccCCCCCceE-EEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCC
Confidence 4567899999777 45677899999999999999988 7788899999999999999999999999999999988764
Q ss_pred CCCCEEEEEeCCCCCC-cccCh-HHHHHHHHcCCcEEEeccCCCC-CchHHHHHHHHHHhCC
Q 029875 81 ENIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSNY-NFEKPFLYLARKLAGD 139 (186)
Q Consensus 81 ~~~p~ilv~nK~Dl~~-~~~~~-~~~~~~~~~~~~~~~~Sa~~~~-gi~~l~~~l~~~i~~~ 139 (186)
.+.|+++|+||+|+.+ +.+.. +...++..++++++++||++|. |++++|.++++.+.+.
T Consensus 131 ~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~~gi~~l~~~l~~~i~~~ 192 (196)
T 2atv_A 131 KNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREVRRR 192 (196)
T ss_dssp SCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEECcccccccccCHHHHHHHHHHhCCeEEEECCCcCCcCHHHHHHHHHHHHHhh
Confidence 5899999999999975 34443 3557888889999999999999 9999999999988653
No 76
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.91 E-value=1.8e-23 Score=156.32 Aligned_cols=133 Identities=22% Similarity=0.383 Sum_probs=112.8
Q ss_pred CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHH-HHHHHHHhhcC
Q 029875 3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCE 81 (186)
Q Consensus 3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~-~~~~~~~~~~~ 81 (186)
+...+.||++.. ....+.+++..+.+.||||||+++|..++..+++++|++|+|||++++.+|+.+. .|+..+....+
T Consensus 55 ~~~~~~~t~~~~-~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~ 133 (204)
T 4gzl_A 55 FPGEYIPTVFDN-YSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP 133 (204)
T ss_dssp CCC-CCCCSEEE-EEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCS
T ss_pred CCCCcCCeecce-eEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC
Confidence 456788999754 4567788999999999999999999999999999999999999999999999986 89999988878
Q ss_pred CCCEEEEEeCCCCCCcc-------------cCh-HHHHHHHHcCC-cEEEeccCCCCCchHHHHHHHHHH
Q 029875 82 NIPIVLCGNKVDVKNRQ-------------VKA-KQVTFHRKKNL-QYYEISAKSNYNFEKPFLYLARKL 136 (186)
Q Consensus 82 ~~p~ilv~nK~Dl~~~~-------------~~~-~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~i 136 (186)
+.|+++|+||+|+.+.. +.. +...+++..+. +++++||++|.||+++|+++.+.+
T Consensus 134 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 134 NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp SCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHTT
T ss_pred CCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEEEEeeCCCCCCHHHHHHHHHHHh
Confidence 89999999999997532 222 34577788876 599999999999999999998764
No 77
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.91 E-value=1e-22 Score=149.87 Aligned_cols=136 Identities=24% Similarity=0.390 Sum_probs=108.0
Q ss_pred CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc--
Q 029875 3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-- 80 (186)
Q Consensus 3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-- 80 (186)
+...+.+|++..+. ..+.+++..+.+.||||+|++.+..++..+++.++++++|||+++..+++.+..|+..+....
T Consensus 46 ~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~ 124 (190)
T 3con_A 46 FVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDS 124 (190)
T ss_dssp CCSCCCTTCCEEEE-EEEEETTEEEEEEEEECCC-----------CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTC
T ss_pred CccccCCccceEEE-EEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCC
Confidence 34567888886664 577789999999999999999999999999999999999999999999999999999988765
Q ss_pred CCCCEEEEEeCCCCCCcccChH-HHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCC
Q 029875 81 ENIPIVLCGNKVDVKNRQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD 139 (186)
Q Consensus 81 ~~~p~ilv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 139 (186)
.+.|+++|+||+|+.++....+ ..+++..++++++++||++|.|++++|.+|.+.+.+.
T Consensus 125 ~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 184 (190)
T 3con_A 125 DDVPMVLVGNKCDLPTRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREIRQY 184 (190)
T ss_dssp SCCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEEECCcCCcccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 3799999999999987554443 5578888899999999999999999999999988653
No 78
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.90 E-value=1.3e-23 Score=155.58 Aligned_cols=131 Identities=21% Similarity=0.348 Sum_probs=107.5
Q ss_pred cccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc-----
Q 029875 6 WGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC----- 80 (186)
Q Consensus 6 ~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~----- 80 (186)
.|.||+|..+... ++..+.++||||+|+++|..++..+++++|++|+|||++++.+|..+..|+..+.+..
T Consensus 46 ~~~~t~~~~~~~~----~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~ 121 (199)
T 4bas_A 46 HITATVGYNVETF----EKGRVAFTVFDMGGAKKFRGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRE 121 (199)
T ss_dssp CCCCCSSEEEEEE----EETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSB
T ss_pred ccccccceeEEEE----EeCCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhc
Confidence 6899999666543 3467899999999999999999999999999999999999999999999988886642
Q ss_pred ----CCCCEEEEEeCCCCCCcccChHHH------HHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCCC
Q 029875 81 ----ENIPIVLCGNKVDVKNRQVKAKQV------TFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDP 140 (186)
Q Consensus 81 ----~~~p~ilv~nK~Dl~~~~~~~~~~------~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~ 140 (186)
.+.|++||+||+|+.+.....+.. .+++..++++++|||++|.||+++|++|++.+....
T Consensus 122 ~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~~ 191 (199)
T 4bas_A 122 LPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTLMGDHPFVIFASNGLKGTGVHEGFSWLQETASRQS 191 (199)
T ss_dssp CTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHHHHTTSCEEEEECBTTTTBTHHHHHHHHHHHHHHHC
T ss_pred ccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchhhccCCeeEEEEeeCCCccCHHHHHHHHHHHHHHHh
Confidence 279999999999998653222211 111345678999999999999999999999987553
No 79
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.90 E-value=4.3e-23 Score=152.72 Aligned_cols=136 Identities=22% Similarity=0.271 Sum_probs=117.3
Q ss_pred CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc--
Q 029875 3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-- 80 (186)
Q Consensus 3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-- 80 (186)
+...|.||++..+. ..+.+++..+.+.||||||++.|..++..+++++|++|+|||++++.+++.+..|+..+.+..
T Consensus 33 ~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~ 111 (199)
T 2gf0_A 33 FRDTYIPTIEDTYR-QVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGS 111 (199)
T ss_dssp CCCTTSCCCCEEEE-EEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSC
T ss_pred CCCcccCcccccee-EEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcC
Confidence 34568899997765 456778899999999999999999999999999999999999999999999988888776653
Q ss_pred -CCCCEEEEEeCCCCCCcccChH-HHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCC
Q 029875 81 -ENIPIVLCGNKVDVKNRQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD 139 (186)
Q Consensus 81 -~~~p~ilv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 139 (186)
.+.|+++|+||+|+.++.+..+ ...++..++++++++||++|.|++++|.++++.+...
T Consensus 112 ~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 172 (199)
T 2gf0_A 112 VEDIPVMLVGNKCDETQREVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQELLTLETRR 172 (199)
T ss_dssp GGGSCEEEEEECTTCSSCSSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHCSSS
T ss_pred CCCCCEEEEEECccCCccccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHHHHhhh
Confidence 4789999999999987655444 4577888899999999999999999999999987654
No 80
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.90 E-value=8.2e-23 Score=151.48 Aligned_cols=131 Identities=21% Similarity=0.281 Sum_probs=110.1
Q ss_pred cccceEEEEEEEEEECCeEEEEEEEeCCCccc-cCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc--CCCC
Q 029875 8 KATIGVEVHPLDFFTNCGKIRFYCWDTAGQEK-FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIP 84 (186)
Q Consensus 8 ~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~-~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~--~~~p 84 (186)
.+|+|.++..+.+.+++..+.+.+|||+|+.. +..++..+++.++++++|||++++.||+.+..|...+.... .+.|
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~p 116 (192)
T 2cjw_A 37 XEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIP 116 (192)
T ss_dssp -GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCC
T ss_pred ccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCe
Confidence 35688898888899999999999999999877 56678889999999999999999999999999988887653 4799
Q ss_pred EEEEEeCCCCCC-cccChH-HHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhC
Q 029875 85 IVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG 138 (186)
Q Consensus 85 ~ilv~nK~Dl~~-~~~~~~-~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 138 (186)
+++|+||+|+.. +.+..+ ...++..+++++++|||++|.||+++|.++++.+..
T Consensus 117 iilV~NK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~SA~~g~~v~~lf~~l~~~~~~ 172 (192)
T 2cjw_A 117 IILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELFEGIVRQVRL 172 (192)
T ss_dssp EEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred EEEEEechhhhccccccHHHHHHHHHHhCCceEEeccccCCCHHHHHHHHHHHHHh
Confidence 999999999974 344333 446777888999999999999999999999998853
No 81
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.90 E-value=1.9e-23 Score=155.54 Aligned_cols=127 Identities=14% Similarity=0.190 Sum_probs=97.8
Q ss_pred cccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhh--cCCC
Q 029875 6 WGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENI 83 (186)
Q Consensus 6 ~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~--~~~~ 83 (186)
.|.||+|... ..+.+++ +.+++|||||++.+..++..+++++|++|+|||++++.+|..+..|+..+.+. ..+.
T Consensus 52 ~~~~t~~~~~--~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~ 127 (198)
T 1f6b_A 52 QHVPTLHPTS--EELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANV 127 (198)
T ss_dssp ---CCCCCSC--EEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTS
T ss_pred ccCCCCCcee--EEEEECC--EEEEEEECCCcHhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCC
Confidence 5778998864 3555565 78999999999999999999999999999999999999999999999988764 2689
Q ss_pred CEEEEEeCCCCCCcccChHHHHHHHH-----------------cCCcEEEeccCCCCCchHHHHHHHHHH
Q 029875 84 PIVLCGNKVDVKNRQVKAKQVTFHRK-----------------KNLQYYEISAKSNYNFEKPFLYLARKL 136 (186)
Q Consensus 84 p~ilv~nK~Dl~~~~~~~~~~~~~~~-----------------~~~~~~~~Sa~~~~gi~~l~~~l~~~i 136 (186)
|+++|+||+|+.+.....+..+++.. .++++++|||++|.||+++|.++.+.+
T Consensus 128 piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~l 197 (198)
T 1f6b_A 128 PILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI 197 (198)
T ss_dssp CEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEECBTTTTBSHHHHHHHHHTTC
T ss_pred cEEEEEECCCccccCCHHHHHHHhCcccccccccccccccccCceEEEEEEECCCCCCHHHHHHHHHHhc
Confidence 99999999999763222333344432 235799999999999999999998643
No 82
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.90 E-value=5.9e-23 Score=151.88 Aligned_cols=126 Identities=16% Similarity=0.245 Sum_probs=102.8
Q ss_pred cccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhh--cCCC
Q 029875 6 WGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENI 83 (186)
Q Consensus 6 ~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~--~~~~ 83 (186)
.|.||+|.... .+.+++ +.+++|||||++.+..++..+++++|++|+|||++++.+|+.+..|+..+.+. ..+.
T Consensus 50 ~~~~t~~~~~~--~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~ 125 (190)
T 1m2o_B 50 TLQPTWHPTSE--ELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDV 125 (190)
T ss_dssp CCCCCCSCEEE--EEEETT--EEEEEEECCCSGGGTTSGGGGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTC
T ss_pred ccccCCCCCeE--EEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCC
Confidence 57899998643 555565 88999999999999999999999999999999999999999999999888764 2689
Q ss_pred CEEEEEeCCCCCCcccChHHHHHHHH------------cCCcEEEeccCCCCCchHHHHHHHHH
Q 029875 84 PIVLCGNKVDVKNRQVKAKQVTFHRK------------KNLQYYEISAKSNYNFEKPFLYLARK 135 (186)
Q Consensus 84 p~ilv~nK~Dl~~~~~~~~~~~~~~~------------~~~~~~~~Sa~~~~gi~~l~~~l~~~ 135 (186)
|+++|+||+|+.+.....+..+++.. .++++++|||++|.|++++|.++++.
T Consensus 126 piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~ 189 (190)
T 1m2o_B 126 PFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQY 189 (190)
T ss_dssp CEEEEEECTTSTTCCCHHHHHHHTTCSSCCC---CCSSCCEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred CEEEEEECCCCcCCCCHHHHHHHhCCccccccccccccceEEEEEeECCcCCCHHHHHHHHHhh
Confidence 99999999999763222223333221 34579999999999999999999754
No 83
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.90 E-value=6.4e-23 Score=147.93 Aligned_cols=135 Identities=22% Similarity=0.284 Sum_probs=114.6
Q ss_pred CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc--
Q 029875 3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-- 80 (186)
Q Consensus 3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-- 80 (186)
+...+.||++..+. ..+.+++..+.+.+|||||++.+..++..+++.+|++|+|||++++.+++.+..|+..+.+..
T Consensus 28 ~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~ 106 (172)
T 2erx_A 28 FRESYIPTVEDTYR-QVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGD 106 (172)
T ss_dssp CCSSCCCCSCEEEE-EEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC-
T ss_pred CCCCCCCCccccEE-EEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCC
Confidence 34578899997765 456678889999999999999999999999999999999999999999999999988887754
Q ss_pred -CCCCEEEEEeCCCCCC-cccCh-HHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhC
Q 029875 81 -ENIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG 138 (186)
Q Consensus 81 -~~~p~ilv~nK~Dl~~-~~~~~-~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 138 (186)
++.|+++|+||+|+.+ +.+.. +...++..++++++++||++|.|++++|+++.+.+..
T Consensus 107 ~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 167 (172)
T 2erx_A 107 VESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLNLEKR 167 (172)
T ss_dssp --CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHTCCS
T ss_pred CCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEecCCCCcCHHHHHHHHHHHHhh
Confidence 5799999999999975 33333 3457778888999999999999999999999986643
No 84
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.90 E-value=6.4e-23 Score=150.52 Aligned_cols=132 Identities=14% Similarity=0.167 Sum_probs=106.7
Q ss_pred CccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhh--cC
Q 029875 4 SVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CE 81 (186)
Q Consensus 4 ~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~--~~ 81 (186)
...+.||+|..... +.++ .+.+++|||||++++..++..+++++|++|+|||++++.+|+.+..|+..+.+. ..
T Consensus 43 ~~~~~~t~~~~~~~--~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~ 118 (186)
T 1ksh_A 43 VDTISPTLGFNIKT--LEHR--GFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLA 118 (186)
T ss_dssp CSSCCCCSSEEEEE--EEET--TEEEEEEEECCSHHHHTTGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGT
T ss_pred CCcccccCccceEE--EEEC--CEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcC
Confidence 45688999966543 4343 578999999999999999999999999999999999999999999998888765 36
Q ss_pred CCCEEEEEeCCCCCCcccChHHHHHH-----HHcCCcEEEeccCCCCCchHHHHHHHHHHhCC
Q 029875 82 NIPIVLCGNKVDVKNRQVKAKQVTFH-----RKKNLQYYEISAKSNYNFEKPFLYLARKLAGD 139 (186)
Q Consensus 82 ~~p~ilv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 139 (186)
+.|+++|+||+|+.+.....+..+.. ...+++++++||++|.|++++|+++.+.+.+.
T Consensus 119 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 181 (186)
T 1ksh_A 119 GATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISSR 181 (186)
T ss_dssp TCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHHHHTC
T ss_pred CCcEEEEEeCccCCCCCCHHHHHHHhChhhccCCceEEEEeeCCCCCCHHHHHHHHHHHHHhc
Confidence 89999999999997643222222211 12356899999999999999999999998765
No 85
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.89 E-value=7.1e-24 Score=155.92 Aligned_cols=137 Identities=15% Similarity=0.270 Sum_probs=104.5
Q ss_pred CccccccceEEEEEEEEEE---CCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCCh-hhHHhHHHHHHHHHhh
Q 029875 4 SVWGKATIGVEVHPLDFFT---NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTAR-LTYKNVPTWHRDLCRV 79 (186)
Q Consensus 4 ~~~~~~Tig~~~~~~~~~~---~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~-~s~~~i~~~~~~~~~~ 79 (186)
...|.||+|.++....+.+ ++..+.+++|||+|+++|..++..++++++++++|||++++ .+|+.+..|+..+...
T Consensus 30 ~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~ 109 (184)
T 2zej_A 30 LGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKAR 109 (184)
T ss_dssp -------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHH
T ss_pred CCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhh
Confidence 3568999999998877665 34678999999999999999999999999999999999997 5899999999998877
Q ss_pred cCCCCEEEEEeCCCCCCcccC-----hHHHHHHHHcCCc----EEEeccCCCC-CchHHHHHHHHHHhCCC
Q 029875 80 CENIPIVLCGNKVDVKNRQVK-----AKQVTFHRKKNLQ----YYEISAKSNY-NFEKPFLYLARKLAGDP 140 (186)
Q Consensus 80 ~~~~p~ilv~nK~Dl~~~~~~-----~~~~~~~~~~~~~----~~~~Sa~~~~-gi~~l~~~l~~~i~~~~ 140 (186)
.++.|+++|+||+|+.+.... .....++..++++ ++++||++|. |+++++..+.+.+.+..
T Consensus 110 ~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~~l~~~i~~~~~~~~ 180 (184)
T 2zej_A 110 ASSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATEESDALAKLRKTIINESLNFK 180 (184)
T ss_dssp CTTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEEEEECCTTSCCHHHHHHHHHHHHHHHCC-
T ss_pred CCCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcchhheEEEecccCchhHHHHHHHHHHHHhccc
Confidence 678999999999999753221 1123455556676 9999999997 99999999999887643
No 86
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.89 E-value=1.3e-22 Score=149.61 Aligned_cols=131 Identities=22% Similarity=0.315 Sum_probs=105.3
Q ss_pred CccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc---
Q 029875 4 SVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--- 80 (186)
Q Consensus 4 ~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~--- 80 (186)
...+.||+|... ..+.+++ +.+.||||+|++.+..++..+++++|++|+|||++++.+|..+..|+..+....
T Consensus 48 ~~~~~~t~~~~~--~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~ 123 (190)
T 2h57_A 48 SQNILPTIGFSI--EKFKSSS--LSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIK 123 (190)
T ss_dssp CSSCCCCSSEEE--EEEECSS--CEEEEEEECCSTTTGGGGGGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTT
T ss_pred CCCcCCccceeE--EEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhc
Confidence 456889999554 4444454 789999999999999999999999999999999999999999999998887653
Q ss_pred -CCCCEEEEEeCCCCCCcccChHHHHHHH-----HcCCcEEEeccCCCCCchHHHHHHHHHHhC
Q 029875 81 -ENIPIVLCGNKVDVKNRQVKAKQVTFHR-----KKNLQYYEISAKSNYNFEKPFLYLARKLAG 138 (186)
Q Consensus 81 -~~~p~ilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 138 (186)
.+.|+++|+||+|+.+.....+..+++. ..+++++++||++|.||+++|++|.+.+.+
T Consensus 124 ~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 187 (190)
T 2h57_A 124 HRRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDKPWHICASDAIKGEGLQEGVDWLQDQIQT 187 (190)
T ss_dssp TSCCCEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHHHC--
T ss_pred cCCCeEEEEEeCcCcccCCCHHHHHHHhChhhccCCceEEEEccCCCCcCHHHHHHHHHHHHHH
Confidence 4799999999999975433233333332 235689999999999999999999987743
No 87
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.89 E-value=1.9e-22 Score=145.62 Aligned_cols=130 Identities=17% Similarity=0.246 Sum_probs=105.0
Q ss_pred cccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc--CCC
Q 029875 6 WGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENI 83 (186)
Q Consensus 6 ~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~--~~~ 83 (186)
.+.||+|..+.. +.++ .+.+.+|||||++.+..++..+++++|++|+|||++++.+|..+..|+..+.... .+.
T Consensus 34 ~~~~t~~~~~~~--~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~ 109 (171)
T 1upt_A 34 TTIPTIGFNVET--VTYK--NLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKA 109 (171)
T ss_dssp CCCCCSSEEEEE--EEET--TEEEEEEEECCCGGGGGGGGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTC
T ss_pred CcCCcCccceEE--EEEC--CEEEEEEECCCChhhhHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCC
Confidence 578999976654 3334 6789999999999999999999999999999999999999999988888876643 689
Q ss_pred CEEEEEeCCCCCCcccChHHHH-----HHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCC
Q 029875 84 PIVLCGNKVDVKNRQVKAKQVT-----FHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD 139 (186)
Q Consensus 84 p~ilv~nK~Dl~~~~~~~~~~~-----~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 139 (186)
|+++|+||+|+.+.....+... ++...+++++++||++|.|++++|+++++.+.+.
T Consensus 110 piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 170 (171)
T 1upt_A 110 ILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKSR 170 (171)
T ss_dssp EEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHHHHHHHHHHHTC
T ss_pred EEEEEEECCCCcCCCCHHHHHHHhCchhccCCceEEEECcCCCCcCHHHHHHHHHHHHhhc
Confidence 9999999999976432222211 1223356899999999999999999999988654
No 88
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.89 E-value=2.8e-22 Score=159.45 Aligned_cols=136 Identities=21% Similarity=0.355 Sum_probs=117.4
Q ss_pred CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHH-HHHHHHHhhcC
Q 029875 3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCE 81 (186)
Q Consensus 3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~-~~~~~~~~~~~ 81 (186)
+...+.||++..+ ...+.+++..+.+.||||||++.|..++..+++++|++|+|||++++.+|+.+. .|+..+.....
T Consensus 180 ~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~ 258 (332)
T 2wkq_A 180 FPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCP 258 (332)
T ss_dssp CCCSCCCCSEEEE-EEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT
T ss_pred CCcccCCccccee-EEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCC
Confidence 4567889998666 457788999999999999999999999999999999999999999999999986 79999888777
Q ss_pred CCCEEEEEeCCCCCCc-------------ccCh-HHHHHHHHcCC-cEEEeccCCCCCchHHHHHHHHHHhCC
Q 029875 82 NIPIVLCGNKVDVKNR-------------QVKA-KQVTFHRKKNL-QYYEISAKSNYNFEKPFLYLARKLAGD 139 (186)
Q Consensus 82 ~~p~ilv~nK~Dl~~~-------------~~~~-~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 139 (186)
+.|+++|+||+|+.+. .+.. +...++...++ ++++|||++|.||+++|..+++.+...
T Consensus 259 ~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 331 (332)
T 2wkq_A 259 NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCP 331 (332)
T ss_dssp TSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHHC-
T ss_pred CCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEecCCCCcCHHHHHHHHHHHHhcC
Confidence 8999999999999642 2333 34578888887 899999999999999999999988653
No 89
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.89 E-value=3.7e-23 Score=152.15 Aligned_cols=131 Identities=21% Similarity=0.286 Sum_probs=101.7
Q ss_pred cccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhh--cCCC
Q 029875 6 WGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENI 83 (186)
Q Consensus 6 ~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~--~~~~ 83 (186)
.+.||+|.... .+.++ .+.+++|||||++++..++..+++++|++|+|||++++.+|+.+..|+..+.+. ..+.
T Consensus 43 ~~~~t~~~~~~--~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~ 118 (187)
T 1zj6_A 43 HTSPTIGSNVE--EIVIN--NTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKA 118 (187)
T ss_dssp EEECCSCSSCE--EEEET--TEEEEEEECCC----CGGGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTC
T ss_pred cCcCCCccceE--EEEEC--CEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCC
Confidence 67899986554 44444 388999999999999999999999999999999999999999999999988775 3689
Q ss_pred CEEEEEeCCCCCCcccChHHHHHHH-----HcCCcEEEeccCCCCCchHHHHHHHHHHhCCC
Q 029875 84 PIVLCGNKVDVKNRQVKAKQVTFHR-----KKNLQYYEISAKSNYNFEKPFLYLARKLAGDP 140 (186)
Q Consensus 84 p~ilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~ 140 (186)
|+++|+||+|+.+.....+..+... ..+++++++||++|.|++++|+++++.+...+
T Consensus 119 piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~ 180 (187)
T 1zj6_A 119 GLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLKIRL 180 (187)
T ss_dssp EEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHHHHCC--
T ss_pred eEEEEEECCCCcCCCCHHHHHHHhChhhhcCCCcEEEEccCCCCcCHHHHHHHHHHHHHHHh
Confidence 9999999999975432222222221 23568999999999999999999999886654
No 90
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.89 E-value=6.2e-23 Score=151.26 Aligned_cols=132 Identities=18% Similarity=0.310 Sum_probs=105.5
Q ss_pred CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhh--c
Q 029875 3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--C 80 (186)
Q Consensus 3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~--~ 80 (186)
+...+.||+|.++... +...+.+.||||||++++..++..+++++|++|+|||++++.+|+.+..|+..+... .
T Consensus 47 ~~~~~~~t~~~~~~~~----~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~ 122 (188)
T 1zd9_A 47 FNEDMIPTVGFNMRKI----TKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQL 122 (188)
T ss_dssp CCCSCCCCCSEEEEEE----EETTEEEEEEEECCSHHHHTTHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGG
T ss_pred CCCccCCCCceeEEEE----EeCCEEEEEEECCCCHhHHHHHHHHHccCCEEEEEEECCCHHHHHHHHHHHHHHHhCccc
Confidence 4457899999988643 235688999999999999999999999999999999999999999999998888764 2
Q ss_pred CCCCEEEEEeCCCCCCcccChHHHHHH-----HHcCCcEEEeccCCCCCchHHHHHHHHHHhC
Q 029875 81 ENIPIVLCGNKVDVKNRQVKAKQVTFH-----RKKNLQYYEISAKSNYNFEKPFLYLARKLAG 138 (186)
Q Consensus 81 ~~~p~ilv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 138 (186)
.+.|+++|+||+|+.+.....+..... ...+++++++||++|.|++++|++|++.+..
T Consensus 123 ~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~ 185 (188)
T 1zd9_A 123 QGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHSKS 185 (188)
T ss_dssp TTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHTCC-
T ss_pred CCCCEEEEEECCCCccCCCHHHHHHHhChhhhccCCeeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 689999999999997542212211111 1224579999999999999999999987754
No 91
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.89 E-value=5.7e-23 Score=147.51 Aligned_cols=129 Identities=22% Similarity=0.249 Sum_probs=101.0
Q ss_pred cccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhh--cCCC
Q 029875 6 WGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENI 83 (186)
Q Consensus 6 ~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~--~~~~ 83 (186)
.+.||+|.... .+. ...+.+++|||||++++..++..+++++|++++|||++++.+|..+..|+..+... ..+.
T Consensus 27 ~~~~t~~~~~~--~~~--~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~ 102 (164)
T 1r8s_A 27 TTIPTIGFNVE--TVE--YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDA 102 (164)
T ss_dssp CCCCCSSCCEE--EEE--CSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTC
T ss_pred cccCcCceeEE--EEE--ECCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCC
Confidence 46899995443 333 35588999999999999999999999999999999999999999999999888764 2589
Q ss_pred CEEEEEeCCCCCCcccChHHHHH-----HHHcCCcEEEeccCCCCCchHHHHHHHHHHhC
Q 029875 84 PIVLCGNKVDVKNRQVKAKQVTF-----HRKKNLQYYEISAKSNYNFEKPFLYLARKLAG 138 (186)
Q Consensus 84 p~ilv~nK~Dl~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 138 (186)
|+++|+||+|+.+.....+.... +...+++++++||++|.|++++|+++.+.+.+
T Consensus 103 piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 162 (164)
T 1r8s_A 103 VLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRN 162 (164)
T ss_dssp EEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHHC--
T ss_pred eEEEEEECcCCcCCCCHHHHHHHhCcccccCccEEEEEcccCCCcCHHHHHHHHHHHHhh
Confidence 99999999999754221121111 11234579999999999999999999988753
No 92
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.89 E-value=5.1e-23 Score=151.04 Aligned_cols=129 Identities=16% Similarity=0.251 Sum_probs=101.7
Q ss_pred cccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhh--cCCC
Q 029875 6 WGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENI 83 (186)
Q Consensus 6 ~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~--~~~~ 83 (186)
.+.||+|..+. .+.++ .+.+++|||||++.+..++..+++++|++++|||++++.+|+.+..|+..+... ..+.
T Consensus 43 ~~~~t~g~~~~--~~~~~--~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~ 118 (181)
T 1fzq_A 43 HITPTQGFNIK--SVQSQ--GFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCV 118 (181)
T ss_dssp EEEEETTEEEE--EEEET--TEEEEEEECSSCGGGHHHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTC
T ss_pred cccCcCCeEEE--EEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCC
Confidence 47899996544 44444 578999999999999999999999999999999999999999999998887654 2579
Q ss_pred CEEEEEeCCCCCCcccChHHHHHH-----HHcCCcEEEeccCCCCCchHHHHHHHHHHhC
Q 029875 84 PIVLCGNKVDVKNRQVKAKQVTFH-----RKKNLQYYEISAKSNYNFEKPFLYLARKLAG 138 (186)
Q Consensus 84 p~ilv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 138 (186)
|+++|+||+|+.+.....+..+.. ...++++++|||++|.|++++|.++++.+.+
T Consensus 119 piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 178 (181)
T 1fzq_A 119 PVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNVNA 178 (181)
T ss_dssp CEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHTC--
T ss_pred CEEEEEECcCcccCCCHHHHHHHhCchhccCCceEEEEccCCCCCCHHHHHHHHHHHHHh
Confidence 999999999997543222221111 1224579999999999999999999987653
No 93
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.88 E-value=6.5e-23 Score=150.16 Aligned_cols=127 Identities=21% Similarity=0.306 Sum_probs=102.0
Q ss_pred ccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhh--cCC
Q 029875 5 VWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CEN 82 (186)
Q Consensus 5 ~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~--~~~ 82 (186)
..+.||+|..+. .+.+++ +.+.+|||+|++++..++..+++++|++|+|||++++.+|..+..|+..+.+. ..+
T Consensus 47 ~~~~~t~~~~~~--~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~ 122 (181)
T 2h17_A 47 VHTSPTIGSNVE--EIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRK 122 (181)
T ss_dssp EEEECCSSSSCE--EEEETT--EEEEEEEESSSGGGTCGGGGGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTT
T ss_pred CccCCcCceeeE--EEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCC
Confidence 457899997654 344444 88999999999999999999999999999999999999999999999888765 368
Q ss_pred CCEEEEEeCCCCCCcccChHHHHHH-----HHcCCcEEEeccCCCCCchHHHHHHHHH
Q 029875 83 IPIVLCGNKVDVKNRQVKAKQVTFH-----RKKNLQYYEISAKSNYNFEKPFLYLARK 135 (186)
Q Consensus 83 ~p~ilv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 135 (186)
.|+++|+||+|+.+.....+..+.. ...+++++++||++|.|++++|++|++.
T Consensus 123 ~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~ 180 (181)
T 2h17_A 123 AGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSR 180 (181)
T ss_dssp CEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHTC
T ss_pred CeEEEEEECCCcccCCCHHHHHHHhCcccccCCceEEEEccCCCCcCHHHHHHHHHhh
Confidence 9999999999997532222222222 1234589999999999999999999754
No 94
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.88 E-value=2.7e-22 Score=148.57 Aligned_cols=129 Identities=19% Similarity=0.234 Sum_probs=97.3
Q ss_pred cccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc--CCC
Q 029875 6 WGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENI 83 (186)
Q Consensus 6 ~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~--~~~ 83 (186)
.+.||+|.... .+.. ..+.+.+|||||++++..++..+++++|++|+|||++++.+|..+..|+..+.... .+.
T Consensus 56 ~~~~t~~~~~~--~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~ 131 (192)
T 2b6h_A 56 TTIPTIGFNVE--TVEY--KNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDA 131 (192)
T ss_dssp EEEEETTEEEE--EEEE--TTEEEEEEECC-----CTTHHHHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTC
T ss_pred ccCCcCceeEE--EEEE--CCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCC
Confidence 46789995543 3333 45889999999999999999999999999999999999999999999998887643 579
Q ss_pred CEEEEEeCCCCCCcccChHHHHH-----HHHcCCcEEEeccCCCCCchHHHHHHHHHHhC
Q 029875 84 PIVLCGNKVDVKNRQVKAKQVTF-----HRKKNLQYYEISAKSNYNFEKPFLYLARKLAG 138 (186)
Q Consensus 84 p~ilv~nK~Dl~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 138 (186)
|+++|+||+|+.+.....+.... +...+++++++||++|.|++++|.+|++.+.+
T Consensus 132 piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~ 191 (192)
T 2b6h_A 132 VLLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHELSK 191 (192)
T ss_dssp EEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHHTTT
T ss_pred eEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEECcCCCcCCHHHHHHHHHHHHhc
Confidence 99999999999754221111111 11223579999999999999999999988753
No 95
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.88 E-value=4.2e-22 Score=146.58 Aligned_cols=130 Identities=18% Similarity=0.204 Sum_probs=103.8
Q ss_pred cccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc--CCC
Q 029875 6 WGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENI 83 (186)
Q Consensus 6 ~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~--~~~ 83 (186)
.+.||+|..... +.++ .+.+.+|||||++++..++..+++++|++|+|||++++.++..+..|+..+.... .+.
T Consensus 49 ~~~~t~~~~~~~--~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~ 124 (189)
T 2x77_A 49 TTVPTVGVNLET--LQYK--NISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKS 124 (189)
T ss_dssp EECSSTTCCEEE--EEET--TEEEEEEEECCSSSSCCCCSSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTC
T ss_pred CcCCCCceEEEE--EEEC--CEEEEEEECCCCHhHHHHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCC
Confidence 478999965543 3333 5789999999999999999999999999999999999999999988888876643 579
Q ss_pred CEEEEEeCCCCCCcccChHHHH-----HHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCC
Q 029875 84 PIVLCGNKVDVKNRQVKAKQVT-----FHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD 139 (186)
Q Consensus 84 p~ilv~nK~Dl~~~~~~~~~~~-----~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 139 (186)
|+++|+||+|+.+.....+... .+...+++++++||++|.|++++|+++.+.+.+.
T Consensus 125 piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 185 (189)
T 2x77_A 125 LLLIFANKQDLPDAASEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLVEGMDWLVERLREQ 185 (189)
T ss_dssp EEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHHHHHT
T ss_pred eEEEEEECCCCcCCCCHHHHHHHhChhhccCCceEEEEccCCCccCHHHHHHHHHHHHHhc
Confidence 9999999999975422122211 1122345799999999999999999999988654
No 96
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.87 E-value=9.6e-23 Score=151.26 Aligned_cols=128 Identities=17% Similarity=0.194 Sum_probs=102.7
Q ss_pred cccceEEEEEEEEE--E-CCeEEEEEEEeCCCccccCCcc---ccccccCcEEEEEEeCCCh--hhHHhHHHHHHHHHhh
Q 029875 8 KATIGVEVHPLDFF--T-NCGKIRFYCWDTAGQEKFGGLR---DGYYIHGQCAIIMFDVTAR--LTYKNVPTWHRDLCRV 79 (186)
Q Consensus 8 ~~Tig~~~~~~~~~--~-~~~~~~l~l~Dt~G~~~~~~~~---~~~~~~ad~vilv~D~~~~--~s~~~i~~~~~~~~~~ 79 (186)
.+|+|.++....+. + ++..+.++||||+|+++|..+. ..++++++++|+|||++++ .++..+..|+..+...
T Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~ 126 (196)
T 3llu_A 47 NETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKV 126 (196)
T ss_dssp GGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHH
T ss_pred cceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhcccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhc
Confidence 36777666554443 3 3677999999999999998776 7999999999999999997 6777778888888766
Q ss_pred cCCCCEEEEEeCCCCCCc--------ccChH-HHHHHH----HcCCcEEEeccCCCCCchHHHHHHHHHH
Q 029875 80 CENIPIVLCGNKVDVKNR--------QVKAK-QVTFHR----KKNLQYYEISAKSNYNFEKPFLYLARKL 136 (186)
Q Consensus 80 ~~~~p~ilv~nK~Dl~~~--------~~~~~-~~~~~~----~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 136 (186)
.++.|++||+||+|+.+. .+... ...++. .++++|+++||++ .||+++|..+++.+
T Consensus 127 ~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 127 NPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLHLSFYLTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp CTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTTSCEEEEEECTTS-THHHHHHHHHHHHT
T ss_pred CCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhcCCcceEEEEech-hhHHHHHHHHHHHh
Confidence 779999999999998652 22222 235666 5678999999999 99999999999876
No 97
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.79 E-value=5.1e-24 Score=158.93 Aligned_cols=133 Identities=23% Similarity=0.398 Sum_probs=111.8
Q ss_pred CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHH-HHHHHHHhhcC
Q 029875 3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCE 81 (186)
Q Consensus 3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~-~~~~~~~~~~~ 81 (186)
+...+.||++..+ ...+.+++..+.+++|||||+++|..++..+++++|++|+|||++++.+|+.+. .|+..+....+
T Consensus 55 ~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~ 133 (204)
T 3th5_A 55 FPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP 133 (204)
Confidence 3456788987666 456677888899999999999999999999999999999999999999999986 89888887767
Q ss_pred CCCEEEEEeCCCCCCc-------------ccC-hHHHHHHHHcCC-cEEEeccCCCCCchHHHHHHHHHH
Q 029875 82 NIPIVLCGNKVDVKNR-------------QVK-AKQVTFHRKKNL-QYYEISAKSNYNFEKPFLYLARKL 136 (186)
Q Consensus 82 ~~p~ilv~nK~Dl~~~-------------~~~-~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~i 136 (186)
+.|+++|+||+|+.+. .+. .+...++...++ +++++||++|.|++++|+++++.+
T Consensus 134 ~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~vSA~~g~gi~~l~~~l~~~i 203 (204)
T 3th5_A 134 NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 203 (204)
Confidence 8999999999999742 122 223466677776 899999999999999999998765
No 98
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.87 E-value=4.2e-22 Score=145.51 Aligned_cols=130 Identities=16% Similarity=0.199 Sum_probs=100.0
Q ss_pred ccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc--CC
Q 029875 5 VWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--EN 82 (186)
Q Consensus 5 ~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~--~~ 82 (186)
..+.||+|.... .+.++ .+.+.+|||||++++..++..+++++|++++|||++++.+++.+..|+..+.... .+
T Consensus 44 ~~~~~t~~~~~~--~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~ 119 (183)
T 1moz_A 44 VTTKPTIGFNVE--TLSYK--NLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQD 119 (183)
T ss_dssp EEECSSTTCCEE--EEEET--TEEEEEEEEC----CCTTGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSS
T ss_pred CccCCcCccceE--EEEEC--CEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCC
Confidence 357899996554 34444 3889999999999999999999999999999999999999999999998887653 68
Q ss_pred CCEEEEEeCCCCCCcccChHHHHHHH-----HcCCcEEEeccCCCCCchHHHHHHHHHHhC
Q 029875 83 IPIVLCGNKVDVKNRQVKAKQVTFHR-----KKNLQYYEISAKSNYNFEKPFLYLARKLAG 138 (186)
Q Consensus 83 ~p~ilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 138 (186)
.|+++|+||+|+.+.....+...... ..+++++++||++|.|++++|+++.+.+.+
T Consensus 120 ~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 180 (183)
T 1moz_A 120 AALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVIKE 180 (183)
T ss_dssp CEEEEEEECTTSTTCCCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHHHHHHHHHHHHHH
T ss_pred CeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEEccCCCCcCHHHHHHHHHHHHHh
Confidence 99999999999975422222222211 123479999999999999999999988754
No 99
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.86 E-value=1.1e-20 Score=140.41 Aligned_cols=137 Identities=33% Similarity=0.542 Sum_probs=117.7
Q ss_pred CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc-C
Q 029875 3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-E 81 (186)
Q Consensus 3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-~ 81 (186)
+...+.||+|.++....+.+++..+.+.+|||+|++++..++..++++++++++|||+++..+++.+..|+..+.... .
T Consensus 30 ~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~ 109 (199)
T 2f9l_A 30 FNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADS 109 (199)
T ss_dssp CCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT
T ss_pred CCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC
Confidence 345688999999999999999999999999999999999999999999999999999999999999989998877654 4
Q ss_pred CCCEEEEEeCCCCCC-cccC-hHHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCC
Q 029875 82 NIPIVLCGNKVDVKN-RQVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD 139 (186)
Q Consensus 82 ~~p~ilv~nK~Dl~~-~~~~-~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 139 (186)
+.|+++++||+|+.+ +... .....++...++.++++||+++.|++++|+.+.+.+...
T Consensus 110 ~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~~d~Sal~~~~i~~l~~~l~~~~~~~ 169 (199)
T 2f9l_A 110 NIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRI 169 (199)
T ss_dssp TCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred CCeEEEEEECcccccccCcCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 789999999999975 3333 335678888899999999999999999999999988653
No 100
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.86 E-value=4.9e-23 Score=163.67 Aligned_cols=127 Identities=13% Similarity=0.109 Sum_probs=97.8
Q ss_pred cccccceEEEEEEEEEECCeEEEEEEEeCCCccccCC---ccccccccCcEEEEEEeCCCh--hhHHhHHHHHHHHHhhc
Q 029875 6 WGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG---LRDGYYIHGQCAIIMFDVTAR--LTYKNVPTWHRDLCRVC 80 (186)
Q Consensus 6 ~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~---~~~~~~~~ad~vilv~D~~~~--~s~~~i~~~~~~~~~~~ 80 (186)
.+.||+|+++.. + +..+.++|||||||++|.. ++..|+++|+++|+|||++++ .++..+..|+..+.+..
T Consensus 30 ~~~~Tig~~~~~----v-~~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~~IlV~Ditd~~~~~~~~l~~~l~~~~~~~ 104 (331)
T 3r7w_B 30 YLESTSNPSLEH----F-STLIDLAVMELPGQLNYFEPSYDSERLFKSVGALVYVIDSQDEYINAITNLAMIIEYAYKVN 104 (331)
T ss_dssp TCCCCCSCCCEE----E-CSSSCEEEEECCSCSSSCCCSHHHHHHHTTCSEEEEECCCSSCTTHHHHHHHHHHHHHHHHC
T ss_pred eecCeeeeeeEE----E-ccEEEEEEEECCCchhccchhhhhhhhccCCCEEEEEEECCchHHHHHHHHHHHHHHHhhcC
Confidence 378999999874 2 2458999999999999974 468999999999999999997 33334444566665556
Q ss_pred CCCCEEEEEeCCCCCCc--------ccChH-HHHHHHH----cCCcEEEeccCCCCCchHHHHHHHHHHhC
Q 029875 81 ENIPIVLCGNKVDVKNR--------QVKAK-QVTFHRK----KNLQYYEISAKSNYNFEKPFLYLARKLAG 138 (186)
Q Consensus 81 ~~~p~ilv~nK~Dl~~~--------~~~~~-~~~~~~~----~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 138 (186)
++.|++++|||+|+... ++..+ ..++++. ++++|+++||++ .||.++|..+++.+..
T Consensus 105 ~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eTSAkd-~nV~eAFs~iv~~li~ 174 (331)
T 3r7w_B 105 PSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLTSIFD-HSIYEAFSRIVQKLIP 174 (331)
T ss_dssp TTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEECCCSSS-SHHHHHHHHHHTTSST
T ss_pred CCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEEeccCC-CcHHHHHHHHHHHHHh
Confidence 78999999999999752 23232 2345554 568899999997 5999999999987753
No 101
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.86 E-value=5.2e-22 Score=160.09 Aligned_cols=129 Identities=14% Similarity=0.137 Sum_probs=104.6
Q ss_pred ccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCC----------hhhHHhHHHHHHHH
Q 029875 7 GKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTA----------RLTYKNVPTWHRDL 76 (186)
Q Consensus 7 ~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~----------~~s~~~i~~~~~~~ 76 (186)
+.||+|++... +.++ .+.+++||||||+.++.+|..++++++++|||||+++ ..++.+...|+..+
T Consensus 177 ~~~T~Gi~~~~--~~~~--~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i 252 (353)
T 1cip_A 177 RVKTTGIVETH--FTFK--DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSI 252 (353)
T ss_dssp CCCCCSEEEEE--EEET--TEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHH
T ss_pred cCceeceEEEE--EeeC--CeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHH
Confidence 56788987644 3333 6899999999999999999999999999999999999 45788888899888
Q ss_pred Hhh--cCCCCEEEEEeCCCCCCcc----------------cC-hHHHHHHH-----------HcCCcEEEeccCCCCCch
Q 029875 77 CRV--CENIPIVLCGNKVDVKNRQ----------------VK-AKQVTFHR-----------KKNLQYYEISAKSNYNFE 126 (186)
Q Consensus 77 ~~~--~~~~p~ilv~nK~Dl~~~~----------------~~-~~~~~~~~-----------~~~~~~~~~Sa~~~~gi~ 126 (186)
... ..+.|++|++||+|+.+.. +. .+...++. ..++.+++|||++|.||.
T Consensus 253 ~~~~~~~~~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~ 332 (353)
T 1cip_A 253 CNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQ 332 (353)
T ss_dssp HTCGGGTTSEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHH
T ss_pred HcCccccCCcEEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHH
Confidence 764 3689999999999985321 22 23445554 245679999999999999
Q ss_pred HHHHHHHHHHhCC
Q 029875 127 KPFLYLARKLAGD 139 (186)
Q Consensus 127 ~l~~~l~~~i~~~ 139 (186)
++|.++.+.+...
T Consensus 333 ~vF~~v~~~i~~~ 345 (353)
T 1cip_A 333 FVFDAVTDVIIKN 345 (353)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988653
No 102
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.85 E-value=3.9e-22 Score=160.81 Aligned_cols=120 Identities=15% Similarity=0.155 Sum_probs=94.1
Q ss_pred EEEECC----eEEEEEEEeCCCccccCCccccccccCcEEEEEEeCC----------ChhhHHhHHHHHHHHHhh--cCC
Q 029875 19 DFFTNC----GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVT----------ARLTYKNVPTWHRDLCRV--CEN 82 (186)
Q Consensus 19 ~~~~~~----~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~----------~~~s~~~i~~~~~~~~~~--~~~ 82 (186)
.+.+++ ..+.++||||+||++|+.+|..++++++++|+|||++ +..+|++...|++.+.+. ..+
T Consensus 171 ~f~~~~~~~~~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~ 250 (354)
T 2xtz_A 171 QFSPVGENKKSGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEK 250 (354)
T ss_dssp EECCCCE------EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSS
T ss_pred EEEeccCccccceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCC
Confidence 344555 6799999999999999999999999999999999998 778999999999988764 368
Q ss_pred CCEEEEEeCCCCCCccc-----------------------ChHHHHHHHH----------------cCCcEEEeccCCCC
Q 029875 83 IPIVLCGNKVDVKNRQV-----------------------KAKQVTFHRK----------------KNLQYYEISAKSNY 123 (186)
Q Consensus 83 ~p~ilv~nK~Dl~~~~~-----------------------~~~~~~~~~~----------------~~~~~~~~Sa~~~~ 123 (186)
.|++||+||+|+.+..+ ..+...++.. ..+.+++|||++|.
T Consensus 251 ~piiLvgNK~DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~ 330 (354)
T 2xtz_A 251 TSFMLFLNKFDIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQK 330 (354)
T ss_dssp CEEEEEEECHHHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHH
T ss_pred CeEEEEEECcchhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecch
Confidence 99999999999853211 1223344322 12346899999999
Q ss_pred CchHHHHHHHHHHhC
Q 029875 124 NFEKPFLYLARKLAG 138 (186)
Q Consensus 124 gi~~l~~~l~~~i~~ 138 (186)
||+++|.++.+.+..
T Consensus 331 nV~~vF~~v~~~I~~ 345 (354)
T 2xtz_A 331 LVKKTFKLVDETLRR 345 (354)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH
Confidence 999999999988864
No 103
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.85 E-value=2e-22 Score=155.96 Aligned_cols=134 Identities=19% Similarity=0.196 Sum_probs=102.8
Q ss_pred Cccccccc-eEEEEEEEEE--------------ECCeEEEEEEEe-----------------------CCCccccCCccc
Q 029875 4 SVWGKATI-GVEVHPLDFF--------------TNCGKIRFYCWD-----------------------TAGQEKFGGLRD 45 (186)
Q Consensus 4 ~~~~~~Ti-g~~~~~~~~~--------------~~~~~~~l~l~D-----------------------t~G~~~~~~~~~ 45 (186)
...|.||+ |.++..+.+. +++..+.++||| ++|+++|..++.
T Consensus 57 ~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~ 136 (255)
T 3c5h_A 57 HLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVECKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEK 136 (255)
T ss_dssp CSCCCCEECHHHHTSTTTTTCSEEEEEEEC---------CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTC
T ss_pred ccccCCcccccccceeEeecccccccccccccccCCcEEEEEEEEccccccccccccccccccccccccchhhhhhhhhh
Confidence 34566776 6665543332 467889999999 889999999999
Q ss_pred cccc---------------------cCcEEEEEEeCCCh--hhHHhHHHHHHHHHhh--cCCCCEEEEEeCCCCCCcccC
Q 029875 46 GYYI---------------------HGQCAIIMFDVTAR--LTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVK 100 (186)
Q Consensus 46 ~~~~---------------------~ad~vilv~D~~~~--~s~~~i~~~~~~~~~~--~~~~p~ilv~nK~Dl~~~~~~ 100 (186)
.+++ +||++|+|||++++ .+|+.+..|+..+.+. ..+.|++||+||+|+.+....
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v 216 (255)
T 3c5h_A 137 LMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYI 216 (255)
T ss_dssp BCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHH
T ss_pred hhhhccccccccccccccccccccccCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHH
Confidence 9998 89999999999998 8999999999998775 268999999999999753222
Q ss_pred hHHHHHHHH-cCCcEEEeccCCCCCchHHHHHHHHHHh
Q 029875 101 AKQVTFHRK-KNLQYYEISAKSNYNFEKPFLYLARKLA 137 (186)
Q Consensus 101 ~~~~~~~~~-~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 137 (186)
.+...++.. .+++++++||++|.||+++|.+|++.+.
T Consensus 217 ~~~~~~~~~~~~~~~~e~SAk~g~gv~elf~~l~~~l~ 254 (255)
T 3c5h_A 217 RDAHTFALSKKNLQVVETSARSNVNVDLAFSTLVQLID 254 (255)
T ss_dssp HHHHHHHHTSSSCCEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 445567765 4789999999999999999999998764
No 104
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.85 E-value=4.1e-20 Score=136.72 Aligned_cols=134 Identities=32% Similarity=0.552 Sum_probs=117.9
Q ss_pred CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc-C
Q 029875 3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-E 81 (186)
Q Consensus 3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-~ 81 (186)
+...+.||+|.++....+.+++..+.+++|||+|++++..++..+++.++++++|||.++..+|+.+..|+..+.... .
T Consensus 54 ~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~ 133 (191)
T 1oix_A 54 FNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADS 133 (191)
T ss_dssp CCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCT
T ss_pred CCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC
Confidence 356788999999999999999999999999999999999999999999999999999999999999989998876654 4
Q ss_pred CCCEEEEEeCCCCCC-cccC-hHHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHH
Q 029875 82 NIPIVLCGNKVDVKN-RQVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 136 (186)
Q Consensus 82 ~~p~ilv~nK~Dl~~-~~~~-~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 136 (186)
+.|+++++||+|+.+ +... .....++...++.++++||+++.|++++|+.+.+.+
T Consensus 134 ~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~ld~Sald~~~v~~l~~~l~~~i 190 (191)
T 1oix_A 134 NIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 190 (191)
T ss_dssp TCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 789999999999975 2333 335678888899999999999999999999998875
No 105
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.85 E-value=3e-21 Score=152.72 Aligned_cols=123 Identities=15% Similarity=0.017 Sum_probs=100.7
Q ss_pred ccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChh-hHHhHHHHHHHHHhhcCCC
Q 029875 5 VWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARL-TYKNVPTWHRDLCRVCENI 83 (186)
Q Consensus 5 ~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~-s~~~i~~~~~~~~~~~~~~ 83 (186)
..|.||||..+. ..+..++ .+++||| +++|+.+++.+++++|++|+|||++++. ++..+..|+..+.. .+.
T Consensus 45 ~~~~pTiGd~~~-~~~~~~~---~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~--~~~ 116 (301)
T 1u0l_A 45 QNLKIYVGDRVE-YTPDETG---SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEK--NEL 116 (301)
T ss_dssp TTCCCCTTCEEE-EECCCSS---SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHH--TTC
T ss_pred cCCCCCCccEEE-EEEcCCC---eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHHHHHHHHHH--CCC
Confidence 678999995554 3332232 7899999 9999999999999999999999999987 78888999988765 479
Q ss_pred CEEEEEeCCCCCCcccChHHHHHHHHcC--CcEEEeccCCCCCchHHHHHHHHH
Q 029875 84 PIVLCGNKVDVKNRQVKAKQVTFHRKKN--LQYYEISAKSNYNFEKPFLYLARK 135 (186)
Q Consensus 84 p~ilv~nK~Dl~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~l~~~l~~~ 135 (186)
|++||+||+|+.+.....+..+++..++ ++++++||++|.||+++|..+...
T Consensus 117 piilv~NK~DL~~~~~v~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~ge 170 (301)
T 1u0l_A 117 ETVMVINKMDLYDEDDLRKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLKGK 170 (301)
T ss_dssp EEEEEECCGGGCCHHHHHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHSSS
T ss_pred CEEEEEeHHHcCCchhHHHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhcCC
Confidence 9999999999975322233456777777 899999999999999999887643
No 106
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.85 E-value=2.1e-21 Score=158.49 Aligned_cols=127 Identities=17% Similarity=0.143 Sum_probs=101.0
Q ss_pred cccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCC----------hhhHHhHHHHHHHHH
Q 029875 8 KATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTA----------RLTYKNVPTWHRDLC 77 (186)
Q Consensus 8 ~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~----------~~s~~~i~~~~~~~~ 77 (186)
.||+|+++. .+.++ .+.++||||+||++|+.+|..++++|+++|||||+++ ..+|+++..|+..+.
T Consensus 202 ~~TiGi~~~--~~~~~--~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~ 277 (402)
T 1azs_C 202 VLTSGIFET--KFQVD--KVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIW 277 (402)
T ss_dssp CCCCSEEEE--EEEET--TEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHH
T ss_pred cceeeeEEE--EeecC--CccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHH
Confidence 357787764 44444 4899999999999999999999999999999999999 889999999999987
Q ss_pred hh--cCCCCEEEEEeCCCCCCccc---C-----------------------------hHHHHH-----HHH--------c
Q 029875 78 RV--CENIPIVLCGNKVDVKNRQV---K-----------------------------AKQVTF-----HRK--------K 110 (186)
Q Consensus 78 ~~--~~~~p~ilv~nK~Dl~~~~~---~-----------------------------~~~~~~-----~~~--------~ 110 (186)
.. ..+.|++||+||+|+....+ . .++..+ +.. .
T Consensus 278 ~~~~~~~~piiLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~ 357 (402)
T 1azs_C 278 NNRWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRH 357 (402)
T ss_dssp TCTTCSSCCEEEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSS
T ss_pred hcccCCCCeEEEEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCc
Confidence 75 36899999999999853211 0 122233 222 2
Q ss_pred CCcEEEeccCCCCCchHHHHHHHHHHhC
Q 029875 111 NLQYYEISAKSNYNFEKPFLYLARKLAG 138 (186)
Q Consensus 111 ~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 138 (186)
++.++++||+++.||+++|.++.+.+..
T Consensus 358 ~~~~~~TSA~d~~nV~~vF~~v~~~I~~ 385 (402)
T 1azs_C 358 YCYPHFTCAVDTENIRRVFNDCRDIIQR 385 (402)
T ss_dssp CEEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred ccEEEEEEeecCcCHHHHHHHHHHHHHH
Confidence 3567899999999999999999887764
No 107
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.84 E-value=1.5e-20 Score=150.52 Aligned_cols=129 Identities=22% Similarity=0.292 Sum_probs=97.9
Q ss_pred ccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc--CCCC
Q 029875 7 GKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIP 84 (186)
Q Consensus 7 ~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~--~~~p 84 (186)
..||++..+..... ..+.++||||||++.|..++..+++++|++|+|||++++.+|..+..|+..+.... .+.|
T Consensus 193 ~~pT~~~~~~~~~~----~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~p 268 (329)
T 3o47_A 193 TIPTIGFNVETVEY----KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV 268 (329)
T ss_dssp EEEETTEEEEEEEE----TTEEEEEEECC-----CCSHHHHHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCE
T ss_pred cccccceEEEEEec----CcEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCe
Confidence 45899988765433 56889999999999999999999999999999999999999999988877776543 5899
Q ss_pred EEEEEeCCCCCCcccChHHHHHH-----HHcCCcEEEeccCCCCCchHHHHHHHHHHhCC
Q 029875 85 IVLCGNKVDVKNRQVKAKQVTFH-----RKKNLQYYEISAKSNYNFEKPFLYLARKLAGD 139 (186)
Q Consensus 85 ~ilv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 139 (186)
++||+||+|+.+.....+..... ...+++++++||++|.||+++|.+|++.+.+.
T Consensus 269 iilV~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~el~~~l~~~l~~~ 328 (329)
T 3o47_A 269 LLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 328 (329)
T ss_dssp EEEEEECTTSTTCCCHHHHHHHHTCTTCCSSCEEEEECBTTTTBTHHHHHHHHHHHHTC-
T ss_pred EEEEEECccCCcccCHHHHHHHhchhhhhcCCCEEEEEECCCCcCHHHHHHHHHHHHHhc
Confidence 99999999997643222222111 11234799999999999999999999988653
No 108
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.83 E-value=1.7e-20 Score=157.51 Aligned_cols=131 Identities=19% Similarity=0.243 Sum_probs=103.7
Q ss_pred cccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc--CCC
Q 029875 6 WGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENI 83 (186)
Q Consensus 6 ~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~--~~~ 83 (186)
.+.||+|.++.... ...+.+.||||+|++.|..++..+++++|++|+|||++++.+|+.+..|+..+.+.. .+.
T Consensus 349 ~~~~T~~~~~~~~~----~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~ 424 (497)
T 3lvq_E 349 TTIPTVGFNVETVT----YKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDA 424 (497)
T ss_dssp CCCCCSSEEEEEEE----SSSCEEEEEEECCCGGGSGGGGGGGTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTC
T ss_pred CcCCccceeEEEEE----eCCEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECcchhHHHHHHHHHHHHhhhhhcCCC
Confidence 46799998877533 355789999999999999999999999999999999999999999999988886643 589
Q ss_pred CEEEEEeCCCCCCcccChHHHHHH-----HHcCCcEEEeccCCCCCchHHHHHHHHHHhCCC
Q 029875 84 PIVLCGNKVDVKNRQVKAKQVTFH-----RKKNLQYYEISAKSNYNFEKPFLYLARKLAGDP 140 (186)
Q Consensus 84 p~ilv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~ 140 (186)
|++||+||+|+.+.....+..... ...++++++|||++|.||+++|++|.+.+....
T Consensus 425 p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~~~~~~ 486 (497)
T 3lvq_E 425 IILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYKSKL 486 (497)
T ss_dssp EEEEEEECCSSSSCCCHHHHHHHTTCTTCCSSCEEEEECBTTTTBTHHHHHHHHHHHCC---
T ss_pred cEEEEEECCCCCcCCCHHHHHHHhchhhhhcCCeEEEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 999999999997543222211111 112346999999999999999999999886554
No 109
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.83 E-value=7.6e-21 Score=153.76 Aligned_cols=128 Identities=15% Similarity=0.116 Sum_probs=95.4
Q ss_pred ccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCC----------hhhHHhHHHHHHHH
Q 029875 7 GKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTA----------RLTYKNVPTWHRDL 76 (186)
Q Consensus 7 ~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~----------~~s~~~i~~~~~~~ 76 (186)
+.||+|++... +.++ .+.+++||||||+.++.+|..++++++++|||||+++ ..++.+...|+..+
T Consensus 185 r~~T~Gi~~~~--~~~~--~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i 260 (362)
T 1zcb_A 185 RRPTKGIHEYD--FEIK--NVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETI 260 (362)
T ss_dssp CCCCSSEEEEE--EEET--TEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHH
T ss_pred cCCccceEEEE--eeeC--CeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHH
Confidence 45678887643 4333 5899999999999999999999999999999999999 67899988999888
Q ss_pred Hhh--cCCCCEEEEEeCCCCCCcc-----------------cCh-HHHHHH--------H---HcCCcEEEeccCCCCCc
Q 029875 77 CRV--CENIPIVLCGNKVDVKNRQ-----------------VKA-KQVTFH--------R---KKNLQYYEISAKSNYNF 125 (186)
Q Consensus 77 ~~~--~~~~p~ilv~nK~Dl~~~~-----------------~~~-~~~~~~--------~---~~~~~~~~~Sa~~~~gi 125 (186)
... ..+.|+||++||+|+.+.. +.. +...++ + ..++.++++||++|.||
T Consensus 261 ~~~~~~~~~piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV 340 (362)
T 1zcb_A 261 VNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENI 340 (362)
T ss_dssp HTCGGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHH
T ss_pred hcchhhCCCCEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhH
Confidence 764 3689999999999986311 222 233443 1 33567899999999999
Q ss_pred hHHHHHHHHHHhC
Q 029875 126 EKPFLYLARKLAG 138 (186)
Q Consensus 126 ~~l~~~l~~~i~~ 138 (186)
.++|.++.+.+..
T Consensus 341 ~~vF~~v~~~i~~ 353 (362)
T 1zcb_A 341 RLVFRDVKDTILH 353 (362)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988864
No 110
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.83 E-value=4.7e-21 Score=152.70 Aligned_cols=130 Identities=15% Similarity=0.123 Sum_probs=102.4
Q ss_pred ccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCC----------ChhhHHhHHHHHHHH
Q 029875 7 GKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVT----------ARLTYKNVPTWHRDL 76 (186)
Q Consensus 7 ~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~----------~~~s~~~i~~~~~~~ 76 (186)
+.||+|+......+ +.+.+++|||+||++++.+|..|+++++++|+|||++ +..++.+...|+..+
T Consensus 151 r~~TiGi~~~~~~~----~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i 226 (327)
T 3ohm_A 151 RVPTTGIIEYPFDL----QSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTI 226 (327)
T ss_dssp CCCCCSEEEEEEEE----TTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHH
T ss_pred cCceeeEEEEEEEe----eceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHH
Confidence 67889976554333 4589999999999999999999999999999999655 667788888888887
Q ss_pred Hhhc--CCCCEEEEEeCCCCCCcc-----------------cCh-HHHHHH----------HHcCCcEEEeccCCCCCch
Q 029875 77 CRVC--ENIPIVLCGNKVDVKNRQ-----------------VKA-KQVTFH----------RKKNLQYYEISAKSNYNFE 126 (186)
Q Consensus 77 ~~~~--~~~p~ilv~nK~Dl~~~~-----------------~~~-~~~~~~----------~~~~~~~~~~Sa~~~~gi~ 126 (186)
.... .+.|++|++||+|+.+.. ... ++.+++ ...++.++++||+++.||+
T Consensus 227 ~~~~~~~~~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~ 306 (327)
T 3ohm_A 227 ITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIR 306 (327)
T ss_dssp HTSGGGTTCEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHH
T ss_pred hhhhccCCceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHH
Confidence 6542 689999999999986422 222 233442 2234568899999999999
Q ss_pred HHHHHHHHHHhCCC
Q 029875 127 KPFLYLARKLAGDP 140 (186)
Q Consensus 127 ~l~~~l~~~i~~~~ 140 (186)
.+|..+.+.+.+..
T Consensus 307 ~vF~~v~~~Il~~~ 320 (327)
T 3ohm_A 307 FVFAAVKDTILQLN 320 (327)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999998654
No 111
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.82 E-value=3.7e-20 Score=146.84 Aligned_cols=129 Identities=22% Similarity=0.264 Sum_probs=105.8
Q ss_pred ccccccceEEEEEEEEEECCeEEEEEEEeCCCcccc-----CCccccccccCcEEEEEEeCCChhhHHhHHHHHH---HH
Q 029875 5 VWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF-----GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHR---DL 76 (186)
Q Consensus 5 ~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~-----~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~---~~ 76 (186)
..+.||++.++....+ ++ .+.+++|||||+++| ..++..+++++|++|+|||++++.+|+++..|.. .+
T Consensus 33 ~~~~~Ti~~~~~~~~~--~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l 109 (307)
T 3r7w_A 33 RRLGATIDVEHSHLRF--LG-NMTLNLWDCGGQDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQL 109 (307)
T ss_dssp GGCCCCCSEEEEEEEE--TT-TEEEEEEEECCSHHHHHHHHTTTHHHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHH
T ss_pred cCcCCccceEEEEEEe--CC-ceEEEEEECCCcHHHhhhhhhhHHHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHH
Confidence 3688999999886544 44 689999999999998 7889999999999999999999999999877654 44
Q ss_pred HhhcCCCCEEEEEeCCCCCC---cc----cC-hHHHHHHHHcC---CcEEEeccCCCCCchHHHHHHHHHHh
Q 029875 77 CRVCENIPIVLCGNKVDVKN---RQ----VK-AKQVTFHRKKN---LQYYEISAKSNYNFEKPFLYLARKLA 137 (186)
Q Consensus 77 ~~~~~~~p~ilv~nK~Dl~~---~~----~~-~~~~~~~~~~~---~~~~~~Sa~~~~gi~~l~~~l~~~i~ 137 (186)
....++.|+++|+||+|+.+ +. +. .+..+++..++ ++++++||++ .|+.++|..++..+.
T Consensus 110 ~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~~~tSa~~-~~i~e~~~~iv~~li 180 (307)
T 3r7w_A 110 RKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFPTSIWD-ESLYKAWSQIVCSLI 180 (307)
T ss_dssp HHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEEEECCTTS-SHHHHHHHHHHHTTC
T ss_pred HHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEEEEeeecC-ChHHHHHHHHHHHHc
Confidence 44457899999999999976 21 22 33457888886 7899999999 899999999887654
No 112
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.81 E-value=1.1e-19 Score=136.14 Aligned_cols=129 Identities=16% Similarity=0.158 Sum_probs=90.9
Q ss_pred CccccccceEEEEEEEEEECCe-EEEEEEEeCCCccccCC-ccccccccCcEEEEEEeCCChh-hHHhHHHHHHH-HHhh
Q 029875 4 SVWGKATIGVEVHPLDFFTNCG-KIRFYCWDTAGQEKFGG-LRDGYYIHGQCAIIMFDVTARL-TYKNVPTWHRD-LCRV 79 (186)
Q Consensus 4 ~~~~~~Tig~~~~~~~~~~~~~-~~~l~l~Dt~G~~~~~~-~~~~~~~~ad~vilv~D~~~~~-s~~~i~~~~~~-~~~~ 79 (186)
...|. |++.++.. +.+++. .+.++||||||+++|.. ++..++++++++|+|||+++.. ++..+..|+.. +...
T Consensus 33 ~~~~~-~~~~~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~ 109 (214)
T 2fh5_B 33 RDTQT-SITDSSAI--YKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDS 109 (214)
T ss_dssp CCBCC-CCSCEEEE--EECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHH
T ss_pred ccccC-CcceeeEE--EEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCEEEEEEECCCcCHHHHHHHHHHHHHHhhh
Confidence 34454 55566664 555554 68999999999999988 8889999999999999999854 46665554444 3332
Q ss_pred ---cCCCCEEEEEeCCCCCCcccChHHH-HHH---H---------------------------------Hc--CCcEEEe
Q 029875 80 ---CENIPIVLCGNKVDVKNRQVKAKQV-TFH---R---------------------------------KK--NLQYYEI 117 (186)
Q Consensus 80 ---~~~~p~ilv~nK~Dl~~~~~~~~~~-~~~---~---------------------------------~~--~~~~~~~ 117 (186)
..+.|+++|+||+|+.+........ .+. . .+ +++|++|
T Consensus 110 ~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 189 (214)
T 2fh5_B 110 MALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLEC 189 (214)
T ss_dssp HTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC------------CCCSSCTTSCCCGGGSSSCEEEEEC
T ss_pred hhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccccccCCccccccccCCCCCcccccCCCcEEEEEe
Confidence 2478999999999997543221111 111 1 11 5679999
Q ss_pred ccCCC------CCchHHHHHHHHH
Q 029875 118 SAKSN------YNFEKPFLYLARK 135 (186)
Q Consensus 118 Sa~~~------~gi~~l~~~l~~~ 135 (186)
||++| .||+++|.+|.+.
T Consensus 190 SAk~g~~~~~~~gv~~lf~~l~~~ 213 (214)
T 2fh5_B 190 SAKGGRGDTGSADIQDLEKWLAKI 213 (214)
T ss_dssp BCC-------CCBCHHHHHHHHHH
T ss_pred eccCCCccccccChHHHHHHHHHh
Confidence 99999 9999999999875
No 113
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.81 E-value=9.1e-20 Score=131.60 Aligned_cols=124 Identities=16% Similarity=0.128 Sum_probs=93.0
Q ss_pred cccccceEEEEEEEEEECCeEEEEEEEeCCCccccCC------ccccccc--cCcEEEEEEeCCChhhHHhHHHHHHHHH
Q 029875 6 WGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG------LRDGYYI--HGQCAIIMFDVTARLTYKNVPTWHRDLC 77 (186)
Q Consensus 6 ~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~------~~~~~~~--~ad~vilv~D~~~~~s~~~i~~~~~~~~ 77 (186)
.+.|+++.+.....+.+++ ..+++|||||++.+.. +...+++ +++++++|+|+++..+ ...|+..+.
T Consensus 31 ~~~~~~t~~~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~~~---~~~~~~~~~ 105 (165)
T 2wji_A 31 GNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATALER---NLYLTLQLM 105 (165)
T ss_dssp C-----CCCCCEEEEEETT--EEEEEEECCCCSCSSSSSHHHHHHHHHHHHHCCSEEEEEEETTCHHH---HHHHHHHHH
T ss_pred cCCCCcceeeeEEEEEECC--cEEEEEECCCcccCCCcchhHHHHHHHHhcCCCCEEEEEecCCchhH---hHHHHHHHH
Confidence 4456666666666666655 5789999999998763 3356665 8999999999998543 445777766
Q ss_pred hhcCCCCEEEEEeCCCCCC-cccChHHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHH
Q 029875 78 RVCENIPIVLCGNKVDVKN-RQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 136 (186)
Q Consensus 78 ~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 136 (186)
+ .+.|+++|+||+|+.. +.+..+...++..++++++++||++|.|++++|.++.+.+
T Consensus 106 ~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~v~~l~~~l~~~~ 163 (165)
T 2wji_A 106 E--MGANLLLALNKMDLAKSLGIEIDVDKLEKILGVKVVPLSAAKKMGIEELKKAISIAV 163 (165)
T ss_dssp H--TTCCEEEEEECHHHHHHTTCCCCHHHHHHHHTSCEEECBGGGTBSHHHHHHHHHHHT
T ss_pred h--cCCCEEEEEEchHhccccChhhHHHHHHHHhCCCEEEEEcCCCCCHHHHHHHHHHHh
Confidence 5 3799999999999864 3333345677888899999999999999999999998875
No 114
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.81 E-value=7.6e-21 Score=152.08 Aligned_cols=128 Identities=13% Similarity=0.159 Sum_probs=102.4
Q ss_pred ccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCC----------ChhhHHhHHHHHHHH
Q 029875 7 GKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVT----------ARLTYKNVPTWHRDL 76 (186)
Q Consensus 7 ~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~----------~~~s~~~i~~~~~~~ 76 (186)
+.||+|+......+ +.+.+++|||+||++++.+|..|+++++++|+|||++ +..++.+...|+..+
T Consensus 145 ~~~TiGi~~~~~~~----~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i 220 (340)
T 4fid_A 145 RTKTTGIHEYDFVV----KDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDI 220 (340)
T ss_dssp CCCCCSCEEEEEES----SSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHH
T ss_pred ccceeeeEEEEEEe----eeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHH
Confidence 67789977664443 5689999999999999999999999999999999999 678898888888888
Q ss_pred Hhhc--CCCCEEEEEeCCCCCCccc-----------------ChHHHHHH-HHc--------------------------
Q 029875 77 CRVC--ENIPIVLCGNKVDVKNRQV-----------------KAKQVTFH-RKK-------------------------- 110 (186)
Q Consensus 77 ~~~~--~~~p~ilv~nK~Dl~~~~~-----------------~~~~~~~~-~~~-------------------------- 110 (186)
.... .+.|++|++||+|+.+..+ ..++.+++ .++
T Consensus 221 ~~~~~~~~~piiLv~NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (340)
T 4fid_A 221 MTNEFLKGAVKLIFLNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNE 300 (340)
T ss_dssp HHCGGGTTSEEEEEEECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------C
T ss_pred hhhhccCCCeEEEEEECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCc
Confidence 7642 6899999999999853111 11222322 122
Q ss_pred CCcEEEeccCCCCCchHHHHHHHHHHhC
Q 029875 111 NLQYYEISAKSNYNFEKPFLYLARKLAG 138 (186)
Q Consensus 111 ~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 138 (186)
++.++++||+++.||+.+|..+.+.|.+
T Consensus 301 ~iy~h~TsA~dt~nv~~vF~~v~~~Il~ 328 (340)
T 4fid_A 301 KVYTNPTNATDGSNIKRVFMLAVDVIMK 328 (340)
T ss_dssp EEEEEEECTTCHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEEEeeCcHHHHHHHHHHHHHHHH
Confidence 3568899999999999999999999876
No 115
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.79 E-value=4.4e-19 Score=128.69 Aligned_cols=131 Identities=15% Similarity=0.139 Sum_probs=94.6
Q ss_pred CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCC
Q 029875 3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCEN 82 (186)
Q Consensus 3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~ 82 (186)
+...+.||++.++....+.+++. .+.+|||||++.|..++..+++.+|++|+|||+++....... .++..+.. .+
T Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~-~~l~~~~~--~~ 107 (178)
T 2lkc_A 33 VTEQEAGGITQHIGAYQVTVNDK--KITFLDTPGHEAFTTMRARGAQVTDIVILVVAADDGVMPQTV-EAINHAKA--AN 107 (178)
T ss_dssp SSCSSCCSSSTTCCCCEEEETTE--EEEESCCCSSSSSSCSCCSSCCCCCEEEEEEETTCCCCHHHH-HHHHHHGG--GS
T ss_pred cccCCCCceeEeeeEEEEEeCCc--eEEEEECCCCHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHH-HHHHHHHh--CC
Confidence 34456777777777667777765 457999999999999999999999999999999984322211 12222222 47
Q ss_pred CCEEEEEeCCCCCCcccChHHHHHHHHc-------C--CcEEEeccCCCCCchHHHHHHHHHHhCC
Q 029875 83 IPIVLCGNKVDVKNRQVKAKQVTFHRKK-------N--LQYYEISAKSNYNFEKPFLYLARKLAGD 139 (186)
Q Consensus 83 ~p~ilv~nK~Dl~~~~~~~~~~~~~~~~-------~--~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 139 (186)
.|+++|+||+|+.+... .......... + ++++++||++|.|++++|++|++.+...
T Consensus 108 ~p~ilv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~ 172 (178)
T 2lkc_A 108 VPIIVAINKMDKPEANP-DRVMQELMEYNLVPEEWGGDTIFCKLSAKTKEGLDHLLEMILLVSEME 172 (178)
T ss_dssp CCEEEEEETTTSSCSCH-HHHHHHHTTTTCCBTTTTSSEEEEECCSSSSHHHHHHHHHHHHHHHHT
T ss_pred CCEEEEEECccCCcCCH-HHHHHHHHhcCcChhHcCCcccEEEEecCCCCCHHHHHHHHHHhhhhh
Confidence 89999999999975321 1222222222 1 4799999999999999999999888654
No 116
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.77 E-value=1.9e-19 Score=152.50 Aligned_cols=136 Identities=17% Similarity=0.212 Sum_probs=100.7
Q ss_pred CCccccccceEEEEEEE------EEE--CCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHH
Q 029875 3 VSVWGKATIGVEVHPLD------FFT--NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHR 74 (186)
Q Consensus 3 ~~~~~~~Tig~~~~~~~------~~~--~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~ 74 (186)
+...+.||+|.++..+. +.+ ++..+.+.+|||||++.|..++..++++++++|+|||+++. +.+..|+.
T Consensus 66 ~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~~l~~~d~ii~V~D~s~~---~~~~~~~~ 142 (535)
T 3dpu_A 66 FDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSRTD---SNKHYWLR 142 (535)
T ss_dssp ---------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCHHHHHSSEEEEEEECGGGG---GGHHHHHH
T ss_pred CCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHHHHccCCcEEEEEEeCCCc---hhHHHHHH
Confidence 34568899999988652 222 34568999999999999999999999999999999999864 56778999
Q ss_pred HHHhhcCCCCEEEEEeCCCCCC-cccChH-HHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCCCC
Q 029875 75 DLCRVCENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPN 141 (186)
Q Consensus 75 ~~~~~~~~~p~ilv~nK~Dl~~-~~~~~~-~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~ 141 (186)
.+....++.|+++|+||+|+.+ +.+..+ ...++...+.+++++||++|.||+++|..+.+.+.+...
T Consensus 143 ~l~~~~~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gi~eL~~~l~~~~~~~~~ 211 (535)
T 3dpu_A 143 HIEKYGGKSPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNGDGVESIAKSLKSAVLHPDS 211 (535)
T ss_dssp HHHHHSSSCCEEEEECCTTTCTTCCCCHHHHHHHCGGGTTCEEECCC-----CTTHHHHHHHHHTCTTS
T ss_pred HHHHhCCCCCEEEEEECCCcccccccCHHHHHHHHHhcCCceEEEecCcccCHHHHHHHHHHHHhcccc
Confidence 9998877899999999999975 333333 446666778899999999999999999999999987653
No 117
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.77 E-value=2e-18 Score=126.53 Aligned_cols=128 Identities=16% Similarity=0.140 Sum_probs=101.1
Q ss_pred cccccceEEEEEEEEEECCeEEEEEEEeCCCccccCC------ccccccc--cCcEEEEEEeCCChhhHHhHHHHHHHHH
Q 029875 6 WGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG------LRDGYYI--HGQCAIIMFDVTARLTYKNVPTWHRDLC 77 (186)
Q Consensus 6 ~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~------~~~~~~~--~ad~vilv~D~~~~~s~~~i~~~~~~~~ 77 (186)
.+.|+++.+.....+.+++ +.+.+|||||++.+.. ++..++. .++++++|+|.++ ++....|+..+.
T Consensus 35 ~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~---~~~~~~~~~~~~ 109 (188)
T 2wjg_A 35 GNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATA---LERNLYLTLQLM 109 (188)
T ss_dssp EECTTSCCEEEEEEEEETT--EEEEEEECCCCSCCSSSSHHHHHHHHHHHHHCCSEEEEEEEGGG---HHHHHHHHHHHH
T ss_pred cCCCCeeccceEEEEEeCC--cEEEEEECCCcCccccccHHHHHHHHHHhccCCCEEEEEecchh---HHHHHHHHHHHH
Confidence 4567777777777776665 6789999999998853 4566665 4999999999986 455667877776
Q ss_pred hhcCCCCEEEEEeCCCCCC-cccChHHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCCC
Q 029875 78 RVCENIPIVLCGNKVDVKN-RQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDP 140 (186)
Q Consensus 78 ~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~ 140 (186)
. .+.|+++|+||+|+.. +.+......++..++++++++||++|.|++++|.++++.+.+..
T Consensus 110 ~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~~~~ 171 (188)
T 2wjg_A 110 E--MGANLLLALNKMDLAKSLGIEIDVDKLEKILGVKVVPLSAAKKMGIEELKKAISIAVKDKK 171 (188)
T ss_dssp T--TTCCEEEEEECHHHHHHTTCCCCHHHHHHHHTSCEEECBGGGTBSHHHHHHHHHHHHTTC-
T ss_pred h--cCCCEEEEEEhhhccccccchHHHHHHHHHhCCCeEEEEecCCCCHHHHHHHHHHHHHhcc
Confidence 5 4789999999999864 33334556788888999999999999999999999999987654
No 118
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.76 E-value=3.2e-18 Score=135.73 Aligned_cols=133 Identities=15% Similarity=0.125 Sum_probs=102.4
Q ss_pred EEEEEEEeCCCccccC----------CccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCC
Q 029875 26 KIRFYCWDTAGQEKFG----------GLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK 95 (186)
Q Consensus 26 ~~~l~l~Dt~G~~~~~----------~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~ 95 (186)
..++.||||||+..+. ..+..+++++|++|+|+|+++..++.+...|++.+... +.|+++|+||+|+.
T Consensus 58 ~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~--~~pvilV~NK~Dl~ 135 (308)
T 3iev_A 58 EAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPL--NKPVIVVINKIDKI 135 (308)
T ss_dssp TEEEEEEECCCCCCCCTTCHHHHHHHHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGG--CCCEEEEEECGGGS
T ss_pred CCeEEEEECcCCCccccchhHHHHHHHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhc--CCCEEEEEECccCC
Confidence 6788999999986654 45677889999999999999988888877788887763 78999999999997
Q ss_pred -CcccChH-HHHHHHHcC--CcEEEeccCCCCCchHHHHHHHHHHhCCCCcccccCCCCCCCccccCHH
Q 029875 96 -NRQVKAK-QVTFHRKKN--LQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLA 160 (186)
Q Consensus 96 -~~~~~~~-~~~~~~~~~--~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 160 (186)
+...... ...+...++ .+++++||++|.|++++|..+.+.+.+.+...........+.+....+.
T Consensus 136 ~~~~~~~~~~~~l~~~~~~~~~i~~vSA~~g~gv~~L~~~l~~~l~~~~~~~~~~~~td~~~~~~~~e~ 204 (308)
T 3iev_A 136 GPAKNVLPLIDEIHKKHPELTEIVPISALKGANLDELVKTILKYLPEGEPLFPEDMITDLPLRLLAAEI 204 (308)
T ss_dssp SSGGGGHHHHHHHHHHCTTCCCEEECBTTTTBSHHHHHHHHHHHSCBCCCSSCTTCCBCCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhccCCCeEEEEeCCCCCCHHHHHHHHHHhCccCCCCCCcccccCCCHHHHHHHH
Confidence 4444333 335666664 6899999999999999999999999877665544444444444433333
No 119
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.75 E-value=3.8e-19 Score=129.39 Aligned_cols=124 Identities=15% Similarity=0.082 Sum_probs=91.5
Q ss_pred cccceEEEEEEEEEECCeEEEEEEEeCCCccccCCcc--------ccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhh
Q 029875 8 KATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLR--------DGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV 79 (186)
Q Consensus 8 ~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~--------~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~ 79 (186)
.|+++.++....+.+++. .+.+|||||++.+.... ..+++++|++++|||++++.+++ ...|+..+.+.
T Consensus 35 ~~~~t~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~-~~~~~~~~~~~ 111 (172)
T 2gj8_A 35 IAGTTRDVLREHIHIDGM--PLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVD-PAEIWPEFIAR 111 (172)
T ss_dssp STTCCCSCEEEEEEETTE--EEEEEECCCCSCCSSHHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCS-HHHHCHHHHHH
T ss_pred CCCceeceeeEEEEECCe--EEEEEECCCcccchhHHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHH-HHHHHHHHHHh
Confidence 345556677777777775 47899999997653221 23578999999999999988876 45787777665
Q ss_pred c-CCCCEEEEEeCCCCCCcccChHHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCC
Q 029875 80 C-ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD 139 (186)
Q Consensus 80 ~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 139 (186)
. .+.|+++|+||+|+.+... .++...+.+++++||++|.|++++|.++.+.+...
T Consensus 112 ~~~~~p~ilv~NK~Dl~~~~~-----~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~ 167 (172)
T 2gj8_A 112 LPAKLPITVVRNKADITGETL-----GMSEVNGHALIRLSARTGEGVDVLRNHLKQSMGFD 167 (172)
T ss_dssp SCTTCCEEEEEECHHHHCCCC-----EEEEETTEEEEECCTTTCTTHHHHHHHHHHHC---
T ss_pred cccCCCEEEEEECccCCcchh-----hhhhccCCceEEEeCCCCCCHHHHHHHHHHHhhhc
Confidence 4 4799999999999854211 11122457899999999999999999999887543
No 120
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.74 E-value=2.3e-18 Score=122.86 Aligned_cols=121 Identities=17% Similarity=0.118 Sum_probs=83.7
Q ss_pred cccceEEEEEEEEEECCeEEEEEEEeCCCcccc-------CCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc
Q 029875 8 KATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF-------GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC 80 (186)
Q Consensus 8 ~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~-------~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~ 80 (186)
.|++..++....+..++. .+.+|||||+..+ ...+..+++.+|++|+|+|+++..+... .|+......
T Consensus 32 ~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~--~~~~~~~~~- 106 (161)
T 2dyk_A 32 VPGVTRDLKEGVVETDRG--RFLLVDTGGLWSGDKWEKKIQEKVDRALEDAEVVLFAVDGRAELTQAD--YEVAEYLRR- 106 (161)
T ss_dssp ------CCEEEEEEETTE--EEEEEECGGGCSSSSCCHHHHHHHHHHTTTCSEEEEEEESSSCCCHHH--HHHHHHHHH-
T ss_pred CCCceecceEEEEEeCCc--eEEEEECCCCCCccchHHHHHHHHHHHHHhCCEEEEEEECCCcccHhH--HHHHHHHHh-
Confidence 344445556666666665 6789999999874 3345567889999999999998644322 222222222
Q ss_pred CCCCEEEEEeCCCCCCcccChHHHHHHHHcCC-cEEEeccCCCCCchHHHHHHHHHH
Q 029875 81 ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL-QYYEISAKSNYNFEKPFLYLARKL 136 (186)
Q Consensus 81 ~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~i 136 (186)
.+.|+++|+||+|+.+.. ....+++ ..++ +++++||++|.|++++|+++++.+
T Consensus 107 ~~~p~ilv~nK~Dl~~~~--~~~~~~~-~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l 160 (161)
T 2dyk_A 107 KGKPVILVATKVDDPKHE--LYLGPLY-GLGFGDPIPTSSEHARGLEELLEAIWERL 160 (161)
T ss_dssp HTCCEEEEEECCCSGGGG--GGCGGGG-GGSSCSCEECBTTTTBSHHHHHHHHHHHC
T ss_pred cCCCEEEEEECcccccch--HhHHHHH-hCCCCCeEEEecccCCChHHHHHHHHHhC
Confidence 378999999999997542 2223444 5676 899999999999999999998865
No 121
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.74 E-value=1.2e-17 Score=126.51 Aligned_cols=114 Identities=14% Similarity=0.116 Sum_probs=84.9
Q ss_pred EEEEEEEeCCCccccC---------CccccccccCcEEEEEEeCCChhhHHh--HHHHHHHHHhhcCCCCEEEEEeCCCC
Q 029875 26 KIRFYCWDTAGQEKFG---------GLRDGYYIHGQCAIIMFDVTARLTYKN--VPTWHRDLCRVCENIPIVLCGNKVDV 94 (186)
Q Consensus 26 ~~~l~l~Dt~G~~~~~---------~~~~~~~~~ad~vilv~D~~~~~s~~~--i~~~~~~~~~~~~~~p~ilv~nK~Dl 94 (186)
.+.+.||||||+.... .....++..+|++|+|||++++.+|.. ...|+..+....++.|+++|+||+|+
T Consensus 75 ~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl 154 (228)
T 2qu8_A 75 LNKYQIIDTPGLLDRAFENRNTIEMTTITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDK 154 (228)
T ss_dssp TEEEEEEECTTTTTSCGGGCCHHHHHHHHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGG
T ss_pred CCeEEEEECCCCcCcccchhhhHHHHHHHHhhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCccc
Confidence 3689999999984311 112345778999999999999888752 24567666665558999999999999
Q ss_pred CC-cccChH----HHHHHHHcC--CcEEEeccCCCCCchHHHHHHHHHHhCC
Q 029875 95 KN-RQVKAK----QVTFHRKKN--LQYYEISAKSNYNFEKPFLYLARKLAGD 139 (186)
Q Consensus 95 ~~-~~~~~~----~~~~~~~~~--~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 139 (186)
.+ +.+... ...++...+ ++++++||++|.||+++|.+|++.+...
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~~ 206 (228)
T 2qu8_A 155 CNMDSLSIDNKLLIKQILDNVKNPIKFSSFSTLTGVGVEQAKITACELLKND 206 (228)
T ss_dssp CC--CCCHHHHHHHHHHHHHCCSCEEEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred CCchhhHHHHHHHHHHHHHhcCCCceEEEEecccCCCHHHHHHHHHHHHHHH
Confidence 75 333332 335666666 7899999999999999999999988643
No 122
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.73 E-value=1.4e-18 Score=127.25 Aligned_cols=130 Identities=14% Similarity=0.108 Sum_probs=95.4
Q ss_pred CccccccceEEEEEEEEEECCeEEEEEEEeCCC-----------ccccCCcccccccc-CcEEEEEEeCCChhhHHhH-H
Q 029875 4 SVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAG-----------QEKFGGLRDGYYIH-GQCAIIMFDVTARLTYKNV-P 70 (186)
Q Consensus 4 ~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G-----------~~~~~~~~~~~~~~-ad~vilv~D~~~~~s~~~i-~ 70 (186)
...+.|++..+... +.++ .+.+||||| ++.+..++..++++ ++++++||++.+..++..+ .
T Consensus 27 ~~~~~~~~t~~~~~--~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~d~~s~~~~~~ 100 (190)
T 2cxx_A 27 RRGKRPGVTRKIIE--IEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIK 100 (190)
T ss_dssp SSSSSTTCTTSCEE--EEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHHGGGCCEEEEEEETTHHHHHHH
T ss_pred ccCCCCCccceeEE--EecC----CEEEEECCCccccccCCHHHHHHHHHHHHHHHHhhhccCCEEEEEEcchhhhhHHH
Confidence 44556665544333 3323 688999999 67777788888887 8888888888888888776 5
Q ss_pred HHHHH--------HHhh--cCCCCEEEEEeCCCCCCcccChHHHHHHHHcCCc-------EEEeccCCCCCchHHHHHHH
Q 029875 71 TWHRD--------LCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQ-------YYEISAKSNYNFEKPFLYLA 133 (186)
Q Consensus 71 ~~~~~--------~~~~--~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~-------~~~~Sa~~~~gi~~l~~~l~ 133 (186)
.|... +... ..+.|+++|+||+|+.... ......++..++.+ ++++||++|.|++++|.+++
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 179 (190)
T 2cxx_A 101 RWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV-QEVINFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIF 179 (190)
T ss_dssp HHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH-HHHHHHHHHHHTCCGGGHHHHEEECCTTTCTTHHHHHHHHH
T ss_pred hhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH-HHHHHHHHHHhhhhhhccCCcEEEEecCCCCCHHHHHHHHH
Confidence 67653 2222 2579999999999997644 23345677777764 79999999999999999999
Q ss_pred HHHhCCC
Q 029875 134 RKLAGDP 140 (186)
Q Consensus 134 ~~i~~~~ 140 (186)
+.+.+..
T Consensus 180 ~~~~~~~ 186 (190)
T 2cxx_A 180 EVIRERQ 186 (190)
T ss_dssp HHHHHC-
T ss_pred Hhcchhh
Confidence 9987654
No 123
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.72 E-value=1.6e-17 Score=122.34 Aligned_cols=126 Identities=13% Similarity=0.152 Sum_probs=85.5
Q ss_pred cccccceEEEEEEEEEECCeEEEEEEEeCCC----------ccccCCccccccccC---cEEEEEEeCCChhhHHhHHHH
Q 029875 6 WGKATIGVEVHPLDFFTNCGKIRFYCWDTAG----------QEKFGGLRDGYYIHG---QCAIIMFDVTARLTYKNVPTW 72 (186)
Q Consensus 6 ~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G----------~~~~~~~~~~~~~~a---d~vilv~D~~~~~s~~~i~~~ 72 (186)
.+.+|.|.......+.+++ .+.+||||| ++.+..++..+++.+ +++++|+|+++..++.... +
T Consensus 51 ~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~ 126 (195)
T 1svi_A 51 RTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQ-M 126 (195)
T ss_dssp ---------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHH-H
T ss_pred ccCCCCCceeeEEEEEECC---cEEEEECCCCCccccCHHHHHHHHHHHHHHHhhhhcCCEEEEEEECCCCCCHHHHH-H
Confidence 4566776666555555544 589999999 777777888888877 9999999999987776532 2
Q ss_pred HHHHHhhcCCCCEEEEEeCCCCCCcccChH-HHHHHH----HcCCcEEEeccCCCCCchHHHHHHHHHHh
Q 029875 73 HRDLCRVCENIPIVLCGNKVDVKNRQVKAK-QVTFHR----KKNLQYYEISAKSNYNFEKPFLYLARKLA 137 (186)
Q Consensus 73 ~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~-~~~~~~----~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 137 (186)
...+.. .+.|+++|+||+|+.+...... ..++.. ..+.+++++||++|.|++++|+++.+.+.
T Consensus 127 ~~~~~~--~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l~ 194 (195)
T 1svi_A 127 YEFLKY--YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELILFSSETKKGKDEAWGAIKKMIN 194 (195)
T ss_dssp HHHHHH--TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred HHHHHH--cCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCCceEEEEccCCCCHHHHHHHHHHHhc
Confidence 222222 4789999999999975432222 122222 23578999999999999999999998764
No 124
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.72 E-value=6.1e-17 Score=125.37 Aligned_cols=125 Identities=11% Similarity=0.058 Sum_probs=95.1
Q ss_pred ccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCcc------cccc--ccCcEEEEEEeCCChhhHHhHHHHHHHHHh
Q 029875 7 GKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLR------DGYY--IHGQCAIIMFDVTARLTYKNVPTWHRDLCR 78 (186)
Q Consensus 7 ~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~------~~~~--~~ad~vilv~D~~~~~s~~~i~~~~~~~~~ 78 (186)
+.|++.++.....+..+ .+.+.||||||+..+...+ +.++ .++|++|+|+|+++..+. ..|...+.+
T Consensus 34 ~~pg~tv~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~ii~V~D~t~~~~~---~~~~~~l~~ 108 (258)
T 3a1s_A 34 NWPGVTVEKKEGVFTYK--GYTINLIDLPGTYSLGYSSIDEKIARDYLLKGDADLVILVADSVNPEQS---LYLLLEILE 108 (258)
T ss_dssp ECTTSCCEEEEEEEEET--TEEEEEEECCCCSSCCSSSHHHHHHHHHHHHSCCSEEEEEEETTSCHHH---HHHHHHHHT
T ss_pred CCCCceEEEEEEEEEEC--CeEEEEEECCCcCccCCCCHHHHHHHHHHhhcCCCEEEEEeCCCchhhH---HHHHHHHHh
Confidence 34555555554444433 4789999999999887643 5666 589999999999986543 346666655
Q ss_pred hcCCCCEEEEEeCCCCCC-cccChHHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhC
Q 029875 79 VCENIPIVLCGNKVDVKN-RQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG 138 (186)
Q Consensus 79 ~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 138 (186)
. +.|+++|+||+|+.. +.+......++..++++++++||++|.|++++|+++.+.+..
T Consensus 109 ~--~~pvilv~NK~Dl~~~~~i~~~~~~l~~~lg~~vi~~SA~~g~gi~el~~~i~~~~~~ 167 (258)
T 3a1s_A 109 M--EKKVILAMTAIDEAKKTGMKIDRYELQKHLGIPVVFTSSVTGEGLEELKEKIVEYAQK 167 (258)
T ss_dssp T--TCCEEEEEECHHHHHHTTCCBCHHHHHHHHCSCEEECCTTTCTTHHHHHHHHHHHHHS
T ss_pred c--CCCEEEEEECcCCCCccchHHHHHHHHHHcCCCEEEEEeeCCcCHHHHHHHHHHHhhc
Confidence 3 799999999999864 333344567888899999999999999999999999988753
No 125
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.70 E-value=1.8e-17 Score=128.24 Aligned_cols=123 Identities=14% Similarity=0.082 Sum_probs=95.1
Q ss_pred cccccceEEEEEEEEEECCeEEEEEEEeCCCccccCC----------cccccc--ccCcEEEEEEeCCChhhHHhHHHHH
Q 029875 6 WGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG----------LRDGYY--IHGQCAIIMFDVTARLTYKNVPTWH 73 (186)
Q Consensus 6 ~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~----------~~~~~~--~~ad~vilv~D~~~~~s~~~i~~~~ 73 (186)
.+.|++.++.....+.+++. .+.||||||+..+.. +++.++ .++|++|+|+|+++..++..+..|
T Consensus 29 ~~~pg~Tv~~~~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~vi~VvDas~~~~~~~l~~~- 105 (256)
T 3iby_A 29 GNWPGVTVEKKTGEFLLGEH--LIEITDLPGVYSLVANAEGISQDEQIAAQSVIDLEYDCIINVIDACHLERHLYLTSQ- 105 (256)
T ss_dssp EECTTSSSEEEEEEEEETTE--EEEEEECCCCSSCC------CHHHHHHHHHHHHSCCSEEEEEEEGGGHHHHHHHHHH-
T ss_pred cCCCCceEEEEEEEEEECCe--EEEEEeCCCcccccccccCCCHHHHHHHHHHhhCCCCEEEEEeeCCCchhHHHHHHH-
Confidence 34577777777777777765 788999999988764 456677 889999999999997665544333
Q ss_pred HHHHhhcCCCCEEEEEeCCCCCCcc-cChHHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHH
Q 029875 74 RDLCRVCENIPIVLCGNKVDVKNRQ-VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK 135 (186)
Q Consensus 74 ~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 135 (186)
+.. .+.|+++|+||+|+.... .......+...++++++++||++|.|++++|.++.+.
T Consensus 106 --l~~--~~~pvilv~NK~Dl~~~~~~~~~~~~l~~~lg~~vi~~SA~~g~gi~el~~~i~~~ 164 (256)
T 3iby_A 106 --LFE--LGKPVVVALNMMDIAEHRGISIDTEKLESLLGCSVIPIQAHKNIGIPALQQSLLHC 164 (256)
T ss_dssp --HTT--SCSCEEEEEECHHHHHHTTCEECHHHHHHHHCSCEEECBGGGTBSHHHHHHHHHTC
T ss_pred --HHH--cCCCEEEEEEChhcCCcCCcHHHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 333 278999999999987432 2233456778889999999999999999999999876
No 126
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.69 E-value=2.6e-16 Score=131.42 Aligned_cols=127 Identities=11% Similarity=0.007 Sum_probs=79.4
Q ss_pred ccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCcc--------ccccccCcEEEEEEeCCChhhHHhHHHHHHHHHh
Q 029875 7 GKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLR--------DGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR 78 (186)
Q Consensus 7 ~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~--------~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~ 78 (186)
..|++..++....+.+++ +.+.||||||++.+...+ ..+++.||++|+|+|++++.+++.+..+...+..
T Consensus 263 ~~~gtT~d~~~~~i~~~g--~~l~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~ 340 (476)
T 3gee_A 263 HMPGTTRDYIEECFIHDK--TMFRLTDTAGLREAGEEIEHEGIRRSRMKMAEADLILYLLDLGTERLDDELTEIRELKAA 340 (476)
T ss_dssp ----------CEEEEETT--EEEEEEC--------------------CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHH
T ss_pred CCCCceEEEEEEEEEECC--eEEEEEECCCCCcchhHHHHHHHHHHHhhcccCCEEEEEEECCCCcchhhhHHHHHHHHh
Confidence 345555677666777766 468899999998776443 4478999999999999999888654443333332
Q ss_pred hcCCCCEEEEEeCCCCCCcccChHHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHh
Q 029875 79 VCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLA 137 (186)
Q Consensus 79 ~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 137 (186)
..+.|+++|+||+|+.+..... ...+......+++++||++|.||+++|+++.+.+.
T Consensus 341 -l~~~piIvV~NK~Dl~~~~~~~-~~~l~~~~~~~~i~vSAktg~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 341 -HPAAKFLTVANKLDRAANADAL-IRAIADGTGTEVIGISALNGDGIDTLKQHMGDLVK 397 (476)
T ss_dssp -CTTSEEEEEEECTTSCTTTHHH-HHHHHHHHTSCEEECBTTTTBSHHHHHHHHTHHHH
T ss_pred -cCCCCEEEEEECcCCCCccchh-HHHHHhcCCCceEEEEECCCCCHHHHHHHHHHHHh
Confidence 2379999999999997543221 12343332478999999999999999999999987
No 127
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.68 E-value=1e-16 Score=136.98 Aligned_cols=114 Identities=13% Similarity=0.132 Sum_probs=94.5
Q ss_pred CCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCcccChH
Q 029875 23 NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK 102 (186)
Q Consensus 23 ~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~ 102 (186)
++..+.+.||||||+..|...+..+++.+|++|+|+|+++..+++....|..... .+.|+++|+||+|+.+......
T Consensus 67 ~g~~~~l~liDTPGh~dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~---~~ipiIvViNKiDl~~a~~~~v 143 (599)
T 3cb4_D 67 DGETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAME---MDLEVVPVLNKIDLPAADPERV 143 (599)
T ss_dssp TSCEEEEEEEECCCCGGGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH---TTCEEEEEEECTTSTTCCHHHH
T ss_pred CCCeEEEEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH---CCCCEEEeeeccCcccccHHHH
Confidence 5667999999999999999999999999999999999999877777777766554 3789999999999986543222
Q ss_pred HHHHHHHcCC---cEEEeccCCCCCchHHHHHHHHHHhCC
Q 029875 103 QVTFHRKKNL---QYYEISAKSNYNFEKPFLYLARKLAGD 139 (186)
Q Consensus 103 ~~~~~~~~~~---~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 139 (186)
..++...+++ +++.+||++|.|++++|+++.+.+...
T Consensus 144 ~~ei~~~lg~~~~~vi~vSAktg~GI~~Ll~~I~~~lp~p 183 (599)
T 3cb4_D 144 AEEIEDIVGIDATDAVRCSAKTGVGVQDVLERLVRDIPPP 183 (599)
T ss_dssp HHHHHHHTCCCCTTCEEECTTTCTTHHHHHHHHHHHSCCC
T ss_pred HHHHHHHhCCCcceEEEeecccCCCchhHHHHHhhcCCCc
Confidence 3456666666 499999999999999999999887643
No 128
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.68 E-value=1.9e-16 Score=116.20 Aligned_cols=125 Identities=17% Similarity=0.232 Sum_probs=87.8
Q ss_pred cccccceEEEEEEEEEECCeEEEEEEEeCCC----------ccccCCccccccccC---cEEEEEEeCCChhhH--HhHH
Q 029875 6 WGKATIGVEVHPLDFFTNCGKIRFYCWDTAG----------QEKFGGLRDGYYIHG---QCAIIMFDVTARLTY--KNVP 70 (186)
Q Consensus 6 ~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G----------~~~~~~~~~~~~~~a---d~vilv~D~~~~~s~--~~i~ 70 (186)
.+.+|.|..........+. .+.+||||| ++.+..++..+++.+ +++++|+|+++..+. ..+.
T Consensus 50 ~~~~~~~~t~~~~~~~~~~---~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~ 126 (195)
T 3pqc_A 50 FVSKTPGKTRSINFYLVNS---KYYFVDLPGYGYAKVSKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMV 126 (195)
T ss_dssp CCCSSCCCCCCEEEEEETT---TEEEEECCCBSSSCCCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHH
T ss_pred cccCCCCCccCeEEEEECC---cEEEEECCCCccccCChhhHHHHHHHHHHHHhcCcCceEEEEEecCCCCCCHHHHHHH
Confidence 4556666555444443333 477999999 666777778888776 999999999876433 3334
Q ss_pred HHHHHHHhhcCCCCEEEEEeCCCCCCcccCh----HHHHHHHHc-CCcEEEeccCCCCCchHHHHHHHHHHhC
Q 029875 71 TWHRDLCRVCENIPIVLCGNKVDVKNRQVKA----KQVTFHRKK-NLQYYEISAKSNYNFEKPFLYLARKLAG 138 (186)
Q Consensus 71 ~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~----~~~~~~~~~-~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 138 (186)
.|+... +.|+++|+||+|+.+..... ....++... +++++++||++|.||+++|+++.+.+.+
T Consensus 127 ~~~~~~-----~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l~~ 194 (195)
T 3pqc_A 127 EWMKSL-----NIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEYTIIPTSSVTGEGISELLDLISTLLKE 194 (195)
T ss_dssp HHHHHT-----TCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCCSCEEECCTTTCTTHHHHHHHHHHHHC-
T ss_pred HHHHHc-----CCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCCCceEEEecCCCCCHHHHHHHHHHHhhc
Confidence 454432 68999999999997532211 223444443 3689999999999999999999988754
No 129
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.67 E-value=4.3e-17 Score=127.14 Aligned_cols=120 Identities=15% Similarity=0.127 Sum_probs=92.6
Q ss_pred eEEEEEEEEEECCeEEEEEEEeCCCccccC------Cccccccc--cCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCC
Q 029875 12 GVEVHPLDFFTNCGKIRFYCWDTAGQEKFG------GLRDGYYI--HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENI 83 (186)
Q Consensus 12 g~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~------~~~~~~~~--~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~ 83 (186)
|..+..+...++. .+.+++|||||+..+. .+++.++. ++|++|+|+|+++..++ ..|...+.+ .+.
T Consensus 35 g~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~vi~V~D~t~~e~~---~~~~~~l~~--~~~ 108 (272)
T 3b1v_A 35 GVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQRADSILNVVDATNLERN---LYLTTQLIE--TGI 108 (272)
T ss_dssp CCCCSCEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTTCCSEEEEEEEGGGHHHH---HHHHHHHHH--TCS
T ss_pred CCcEEEEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhcCCCCEEEEEecCCchHhH---HHHHHHHHh--cCC
Confidence 3344444555555 6789999999999886 34566775 69999999999986543 356666655 479
Q ss_pred CEEEEEeCCCCCC-cccChHHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHh
Q 029875 84 PIVLCGNKVDVKN-RQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLA 137 (186)
Q Consensus 84 p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 137 (186)
|+++|+||+|+.. +.+......++..++++++++||++|.|++++|.++.+.+.
T Consensus 109 p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg~~vi~~SA~~g~gi~el~~~i~~~~~ 163 (272)
T 3b1v_A 109 PVTIALNMIDVLDGQGKKINVDKLSYHLGVPVVATSALKQTGVDQVVKKAAHTTT 163 (272)
T ss_dssp CEEEEEECHHHHHHTTCCCCHHHHHHHHTSCEEECBTTTTBSHHHHHHHHHHSCT
T ss_pred CEEEEEEChhhCCcCCcHHHHHHHHHHcCCCEEEEEccCCCCHHHHHHHHHHHHh
Confidence 9999999999864 33344456788888999999999999999999999988654
No 130
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.67 E-value=3.1e-16 Score=129.07 Aligned_cols=124 Identities=17% Similarity=0.169 Sum_probs=93.8
Q ss_pred cceEEEEEEEEEECCeEEEEEEEeCCCccccCCccc-------cccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCC
Q 029875 10 TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRD-------GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCEN 82 (186)
Q Consensus 10 Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~-------~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~ 82 (186)
++..+...+.+.+.+. ..+.||||||+..+..+.. .+++++|++|+|+|++... ....|+..+... +
T Consensus 67 gtT~d~~~~~~~~~~~-~~l~liDTpG~~d~~~l~~~~~~~~~~~l~~aD~vllVvD~~~~~---~~~~~l~~l~~~--~ 140 (423)
T 3qq5_A 67 GTTTDPVYKSMELHPI-GPVTLVDTPGLDDVGELGRLRVEKARRVFYRADCGILVTDSAPTP---YEDDVVNLFKEM--E 140 (423)
T ss_dssp ---CCCCEEEEEETTT-EEEEEEECSSTTCCCTTCCCCHHHHHHHHTSCSEEEEECSSSCCH---HHHHHHHHHHHT--T
T ss_pred CeeeeeEEEEEEECCC-CeEEEEECcCCCcccchhHHHHHHHHHHHhcCCEEEEEEeCCChH---HHHHHHHHHHhc--C
Confidence 3334555556665544 2788999999998876643 4788999999999994332 235677777665 7
Q ss_pred CCEEEEEeCCCCCCcccChHHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCC
Q 029875 83 IPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD 139 (186)
Q Consensus 83 ~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 139 (186)
.|+++|+||+|+...........++..++++++++||++|.|++++|+.+.+.+.+.
T Consensus 141 ~piIvV~NK~Dl~~~~~~~~~~~l~~~~g~~v~~vSAktg~gI~eL~~~L~~~l~~~ 197 (423)
T 3qq5_A 141 IPFVVVVNKIDVLGEKAEELKGLYESRYEAKVLLVSALQKKGFDDIGKTISEILPGD 197 (423)
T ss_dssp CCEEEECCCCTTTTCCCTHHHHHSSCCTTCCCCCCSSCCTTSTTTHHHHHHHHSCCC
T ss_pred CCEEEEEeCcCCCCccHHHHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHhhhhh
Confidence 999999999999865544444566667788999999999999999999999999665
No 131
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.66 E-value=3e-16 Score=133.97 Aligned_cols=113 Identities=15% Similarity=0.208 Sum_probs=93.6
Q ss_pred CCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCcccChH
Q 029875 23 NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK 102 (186)
Q Consensus 23 ~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~ 102 (186)
++..+.+.||||||+..|...+..+++.+|++|+|+|+++..+++....|..... .+.|+++++||+|+.+......
T Consensus 69 dg~~~~inliDTPGh~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~---~~ipiIvviNKiDl~~a~~~~v 145 (600)
T 2ywe_A 69 DGNTYKLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE---QDLVIIPVINKIDLPSADVDRV 145 (600)
T ss_dssp TSCEEEEEEECCCCSGGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH---TTCEEEEEEECTTSTTCCHHHH
T ss_pred CCCeEEEEEEECCCcHhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH---CCCCEEEEEeccCccccCHHHH
Confidence 5667999999999999999888889999999999999999888887777766543 3789999999999986543222
Q ss_pred HHHHHHHcCC---cEEEeccCCCCCchHHHHHHHHHHhC
Q 029875 103 QVTFHRKKNL---QYYEISAKSNYNFEKPFLYLARKLAG 138 (186)
Q Consensus 103 ~~~~~~~~~~---~~~~~Sa~~~~gi~~l~~~l~~~i~~ 138 (186)
..++...+++ +++++||++|.|++++|+++++.+..
T Consensus 146 ~~el~~~lg~~~~~vi~vSAktg~GI~~Lle~I~~~lp~ 184 (600)
T 2ywe_A 146 KKQIEEVLGLDPEEAILASAKEGIGIEEILEAIVNRIPP 184 (600)
T ss_dssp HHHHHHTSCCCGGGCEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred HHHHHHhhCCCcccEEEEEeecCCCchHHHHHHHHhccc
Confidence 3355565665 49999999999999999999988864
No 132
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.66 E-value=5.9e-16 Score=120.44 Aligned_cols=130 Identities=16% Similarity=0.101 Sum_probs=99.6
Q ss_pred ccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCC------cccccc--ccCcEEEEEEeCCChhhHHhHHHHHHHH
Q 029875 5 VWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG------LRDGYY--IHGQCAIIMFDVTARLTYKNVPTWHRDL 76 (186)
Q Consensus 5 ~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~------~~~~~~--~~ad~vilv~D~~~~~s~~~i~~~~~~~ 76 (186)
..+.|+++++.....+..++. .+.+|||||+..+.. +++.++ .++|++|+|+|+++... ...|...+
T Consensus 30 ~~~~~~~t~~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~~~---~~~~~~~~ 104 (271)
T 3k53_A 30 VGNWPGVTVEKKEGIMEYREK--EFLVVDLPGIYSLTAHSIDELIARNFILDGNADVIVDIVDSTCLMR---NLFLTLEL 104 (271)
T ss_dssp EEECTTSSCEEEEEEEEETTE--EEEEEECCCCSCCCSSCHHHHHHHHHHHTTCCSEEEEEEEGGGHHH---HHHHHHHH
T ss_pred cCCCCCeEEEeeEEEEEECCc--eEEEEeCCCccccccCCHHHHHHHHhhhccCCcEEEEEecCCcchh---hHHHHHHH
Confidence 345677888888777777665 488999999998876 566666 68999999999998532 33444454
Q ss_pred HhhcCCCCEEEEEeCCCCCC-cccChHHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCCC
Q 029875 77 CRVCENIPIVLCGNKVDVKN-RQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDP 140 (186)
Q Consensus 77 ~~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~ 140 (186)
.+. ...|+++|+||+|+.+ +........+...++++++++||++|.|+.++|..+.+.+....
T Consensus 105 ~~~-~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg~~~~~~Sa~~g~gi~~l~~~i~~~~~~~~ 168 (271)
T 3k53_A 105 FEM-EVKNIILVLNKFDLLKKKGAKIDIKKMRKELGVPVIPTNAKKGEGVEELKRMIALMAEGKV 168 (271)
T ss_dssp HHT-TCCSEEEEEECHHHHHHHTCCCCHHHHHHHHSSCEEECBGGGTBTHHHHHHHHHHHHHTCC
T ss_pred Hhc-CCCCEEEEEEChhcCcccccHHHHHHHHHHcCCcEEEEEeCCCCCHHHHHHHHHHHHhccc
Confidence 443 2399999999999864 22333355777888999999999999999999999999886553
No 133
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.65 E-value=1.2e-16 Score=124.59 Aligned_cols=127 Identities=15% Similarity=0.114 Sum_probs=94.1
Q ss_pred cccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCc----------ccccc--ccCcEEEEEEeCCChhhHHhHHHHH
Q 029875 6 WGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL----------RDGYY--IHGQCAIIMFDVTARLTYKNVPTWH 73 (186)
Q Consensus 6 ~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~----------~~~~~--~~ad~vilv~D~~~~~s~~~i~~~~ 73 (186)
.+.|++..+.....+..++. .+.||||||+..+... ++.++ +.+|++|+|+|+++..+... |.
T Consensus 31 ~~~~g~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~ii~VvD~~~~~~~~~---~~ 105 (274)
T 3i8s_A 31 GNWAGVTVERKEGQFSTTDH--QVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLERNLY---LT 105 (274)
T ss_dssp EECTTSSSEEEEEEEECSSC--EEEEEECCCCSCSCC----CCHHHHHHHHHHHHTCCSEEEEEEEGGGHHHHHH---HH
T ss_pred CCCCCeeEEEEEEEEEeCCC--ceEEEECcCCCccccccccCCHHHHHHHHHHhhcCCCEEEEEecCCChHHHHH---HH
Confidence 34566667777777766654 5678999999887742 22333 68999999999998665444 44
Q ss_pred HHHHhhcCCCCEEEEEeCCCCCCc-ccChHHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCC
Q 029875 74 RDLCRVCENIPIVLCGNKVDVKNR-QVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD 139 (186)
Q Consensus 74 ~~~~~~~~~~p~ilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 139 (186)
..+.+. +.|+++|+||+|+.+. ........++..++++++++||++|.|++++|.++.+.+...
T Consensus 106 ~~l~~~--~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~lg~~~i~~SA~~g~gi~el~~~i~~~~~~~ 170 (274)
T 3i8s_A 106 LQLLEL--GIPCIVALNMLDIAEKQNIRIEIDALSARLGCPVIPLVSTRGRGIEALKLAIDRYKANE 170 (274)
T ss_dssp HHHHHH--TCCEEEEEECHHHHHHTTEEECHHHHHHHHTSCEEECCCGGGHHHHHHHHHHHTCCCCC
T ss_pred HHHHhc--CCCEEEEEECccchhhhhHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHHHhcC
Confidence 444443 7999999999998642 222334577788899999999999999999999998877544
No 134
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.65 E-value=1.8e-15 Score=122.16 Aligned_cols=113 Identities=18% Similarity=0.176 Sum_probs=89.3
Q ss_pred EEEEEEEeCCCccccCCc---------cccccccCcEEEEEEeCCChh--hHHhHHHHHHHHHhhcCCCCEEEEEeCCCC
Q 029875 26 KIRFYCWDTAGQEKFGGL---------RDGYYIHGQCAIIMFDVTARL--TYKNVPTWHRDLCRVCENIPIVLCGNKVDV 94 (186)
Q Consensus 26 ~~~l~l~Dt~G~~~~~~~---------~~~~~~~ad~vilv~D~~~~~--s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl 94 (186)
...+.+|||||...+... ...+...+|++++|+|+++.. +++....|+..+.....+.|+++|+||+|+
T Consensus 213 ~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl 292 (357)
T 2e87_A 213 YFRYQIIDTPGLLDRPISERNEIEKQAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDV 292 (357)
T ss_dssp TEEEEEEECTTTSSSCSTTSCHHHHHHHHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTT
T ss_pred CceEEEEeCCCccccchhhhhHHHHHHHHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECccc
Confidence 467899999998654221 113445699999999999877 677778899988876668999999999999
Q ss_pred CCcccChHHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhC
Q 029875 95 KNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG 138 (186)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 138 (186)
.......+...++...+++++++||++|.|+++++.++.+.+..
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~iSA~~g~gi~~l~~~i~~~l~~ 336 (357)
T 2e87_A 293 ADEENIKRLEKFVKEKGLNPIKISALKGTGIDLVKEEIIKTLRP 336 (357)
T ss_dssp CCHHHHHHHHHHHHHTTCCCEECBTTTTBTHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHhcCCCeEEEeCCCCcCHHHHHHHHHHHHHH
Confidence 75432233456666778999999999999999999999988853
No 135
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.63 E-value=1.9e-16 Score=125.11 Aligned_cols=114 Identities=18% Similarity=0.153 Sum_probs=84.1
Q ss_pred eEEEEEEEeCCCccc--------cCCccccccccCcEEEEEEeCCChhhHHhHHHHH-HHHHhhcCCCCEEEEEeCCCCC
Q 029875 25 GKIRFYCWDTAGQEK--------FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWH-RDLCRVCENIPIVLCGNKVDVK 95 (186)
Q Consensus 25 ~~~~l~l~Dt~G~~~--------~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~-~~~~~~~~~~p~ilv~nK~Dl~ 95 (186)
...++.||||||+.. +......++++||++++|+|+++..+.. ..|+ +.+.+..++.|+++|+||+|+.
T Consensus 53 ~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l~~ad~il~VvD~~~~~~~~--~~~i~~~l~~~~~~~p~ilV~NK~Dl~ 130 (301)
T 1wf3_A 53 GRRQIVFVDTPGLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPE--DELVARALKPLVGKVPILLVGNKLDAA 130 (301)
T ss_dssp TTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHH--HHHHHHHHGGGTTTSCEEEEEECGGGC
T ss_pred CCcEEEEecCccccchhhHHHHHHHHHHHHHHhcCCEEEEEEECCCCCChH--HHHHHHHHHhhcCCCCEEEEEECcccC
Confidence 457899999999876 3445667889999999999999875544 3454 4555544579999999999997
Q ss_pred CcccChHHHHHHHHc-C-CcEEEeccCCCCCchHHHHHHHHHHhCCCCc
Q 029875 96 NRQVKAKQVTFHRKK-N-LQYYEISAKSNYNFEKPFLYLARKLAGDPNL 142 (186)
Q Consensus 96 ~~~~~~~~~~~~~~~-~-~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~~ 142 (186)
+... .....+..+ + .+++++||++|.|++++|+.+.+.+.+.+..
T Consensus 131 ~~~~--~~~~~~~~~~~~~~~~~iSA~~g~gv~~l~~~l~~~l~~~~~~ 177 (301)
T 1wf3_A 131 KYPE--EAMKAYHELLPEAEPRMLSALDERQVAELKADLLALMPEGPFF 177 (301)
T ss_dssp SSHH--HHHHHHHHTSTTSEEEECCTTCHHHHHHHHHHHHTTCCBCCCS
T ss_pred CchH--HHHHHHHHhcCcCcEEEEeCCCCCCHHHHHHHHHHhcccCCCC
Confidence 5322 022233332 2 4689999999999999999999888765543
No 136
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.63 E-value=4.3e-16 Score=129.59 Aligned_cols=127 Identities=16% Similarity=0.088 Sum_probs=89.2
Q ss_pred ccccceEEEEEEEEEECCeEEEEEEEeCCC----------ccccCCcccc-ccccCcEEEEEEeCCChhhHHhHHHHHHH
Q 029875 7 GKATIGVEVHPLDFFTNCGKIRFYCWDTAG----------QEKFGGLRDG-YYIHGQCAIIMFDVTARLTYKNVPTWHRD 75 (186)
Q Consensus 7 ~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G----------~~~~~~~~~~-~~~~ad~vilv~D~~~~~s~~~i~~~~~~ 75 (186)
..|+++.+.....+..++. .++|||||| +++|..++.. +++.||++|+|+|+++..+.. ...|...
T Consensus 225 ~~~gtt~~~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llviD~~~~~~~~-~~~~~~~ 301 (456)
T 4dcu_A 225 NVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQ-DKRIAGY 301 (456)
T ss_dssp C------CTTSEEEEETTE--EEEETTGGGTTTBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHH-HHHHHHH
T ss_pred CCCCeEEEEEEEEEEECCc--eEEEEECCCCCcCcccchHHHHHHHHHHHHHHhhCCEEEEEEeCCCCcCHH-HHHHHHH
Confidence 4455556665566666665 788999999 6677666554 778999999999999854422 2455555
Q ss_pred HHhhcCCCCEEEEEeCCCCCCcc-cC-hHHHHHHHHc-----CCcEEEeccCCCCCchHHHHHHHHHHhC
Q 029875 76 LCRVCENIPIVLCGNKVDVKNRQ-VK-AKQVTFHRKK-----NLQYYEISAKSNYNFEKPFLYLARKLAG 138 (186)
Q Consensus 76 ~~~~~~~~p~ilv~nK~Dl~~~~-~~-~~~~~~~~~~-----~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 138 (186)
+.. .+.|+++|+||+|+.+.. .. .+..+.+... +++++++||++|.||+++|..+.+.+..
T Consensus 302 ~~~--~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~ 369 (456)
T 4dcu_A 302 AHE--AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKASEN 369 (456)
T ss_dssp HHH--TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHHHHHHH
T ss_pred HHH--cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCEEEEcCCCCcCHHHHHHHHHHHHHH
Confidence 554 479999999999997532 22 2333444433 4789999999999999999999987754
No 137
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.63 E-value=4.2e-16 Score=117.14 Aligned_cols=113 Identities=17% Similarity=0.043 Sum_probs=79.4
Q ss_pred CeEEEEEEEeCCCc----------cccCCcccccccc---CcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEe
Q 029875 24 CGKIRFYCWDTAGQ----------EKFGGLRDGYYIH---GQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGN 90 (186)
Q Consensus 24 ~~~~~l~l~Dt~G~----------~~~~~~~~~~~~~---ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~n 90 (186)
.....+.||||||. +.+..+...+++. +|++|+|+|+++..+.. ...|+..+.. .+.|+++|+|
T Consensus 76 ~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~-~~~~~~~l~~--~~~p~i~v~n 152 (223)
T 4dhe_A 76 AAEPVAHLVDLPGYGYAEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPLTEL-DRRMIEWFAP--TGKPIHSLLT 152 (223)
T ss_dssp TTSCSEEEEECCCCCSSCCCSTHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHH-HHHHHHHHGG--GCCCEEEEEE
T ss_pred CCCCcEEEEcCCCCCcccCChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCCCCCHH-HHHHHHHHHh--cCCCEEEEEe
Confidence 44578889999994 4445566667666 88899999999754422 2345555544 4789999999
Q ss_pred CCCCCCcccCh----HHHHHHHH-------cCCcEEEeccCCCCCchHHHHHHHHHHhCC
Q 029875 91 KVDVKNRQVKA----KQVTFHRK-------KNLQYYEISAKSNYNFEKPFLYLARKLAGD 139 (186)
Q Consensus 91 K~Dl~~~~~~~----~~~~~~~~-------~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 139 (186)
|+|+.+..... ...+.... .+.+++++||++|.|++++|.+|.+.+...
T Consensus 153 K~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~ 212 (223)
T 4dhe_A 153 KCDKLTRQESINALRATQKSLDAYRDAGYAGKLTVQLFSALKRTGLDDAHALIESWLRPA 212 (223)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHHHHHHTCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC--
T ss_pred ccccCChhhHHHHHHHHHHHHHhhhhcccCCCCeEEEeecCCCcCHHHHHHHHHHhcCcc
Confidence 99997533211 11222222 456899999999999999999999988654
No 138
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.62 E-value=3.3e-17 Score=122.91 Aligned_cols=110 Identities=15% Similarity=0.120 Sum_probs=80.2
Q ss_pred cccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCcccccccc----CcEEEEEEeCC-ChhhHHhHHHHHHHHHhh-
Q 029875 6 WGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIH----GQCAIIMFDVT-ARLTYKNVPTWHRDLCRV- 79 (186)
Q Consensus 6 ~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~----ad~vilv~D~~-~~~s~~~i~~~~~~~~~~- 79 (186)
.+.||++.++ ..+.+.+|||||++.+..++..+++. ++++|+|||++ ++.+|..+..|+..+...
T Consensus 43 ~~~~~~~~~~---------~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~ 113 (218)
T 1nrj_B 43 SQEPLSAADY---------DGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSIT 113 (218)
T ss_dssp CSSCEEETTG---------GGSSCEEEECCCCGGGTHHHHHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHH
T ss_pred ecCceEEEEe---------eCceEEEEECCCcHHHHHHHHHHHHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcc
Confidence 3566665444 45678999999999999999999887 99999999999 888999988898887664
Q ss_pred ----cCCCCEEEEEeCCCCCCcccC--------hHHHHHHHHcCCcEEEeccCCCCC
Q 029875 80 ----CENIPIVLCGNKVDVKNRQVK--------AKQVTFHRKKNLQYYEISAKSNYN 124 (186)
Q Consensus 80 ----~~~~p~ilv~nK~Dl~~~~~~--------~~~~~~~~~~~~~~~~~Sa~~~~g 124 (186)
..+.|+++|+||+|+...... .+...++...+.+++++||++|.+
T Consensus 114 ~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~Sa~~~~~ 170 (218)
T 1nrj_B 114 ESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERRKKSLNEVERKINEE 170 (218)
T ss_dssp HHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred cccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHHHhccccccccccccc
Confidence 258999999999999754321 223356666677899999998875
No 139
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.61 E-value=5.8e-16 Score=128.16 Aligned_cols=126 Identities=14% Similarity=0.102 Sum_probs=88.2
Q ss_pred cccceEEEEEEEEEECCeEEEEEEEeCCCcc----------ccCCccc-cccccCcEEEEEEeCCChhhHHhHHHHHHHH
Q 029875 8 KATIGVEVHPLDFFTNCGKIRFYCWDTAGQE----------KFGGLRD-GYYIHGQCAIIMFDVTARLTYKNVPTWHRDL 76 (186)
Q Consensus 8 ~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~----------~~~~~~~-~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~ 76 (186)
.|++..+.....+.+++.. ++||||||+. .|..++. .+++.||++|+|+|+++..++++. .|+..+
T Consensus 206 ~~gtT~d~~~~~~~~~~~~--~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~ 282 (436)
T 2hjg_A 206 VAGTTRDAVDTSFTYNQQE--FVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYA 282 (436)
T ss_dssp --------CCEEEEETTEE--EEETTHHHHTCBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHH
T ss_pred CCCceeeeeEEEEEECCeE--EEEEECCCcCcCccccchHHHHHHHHHHHHHHhCCEEEEEEcCCcCCcHHHH-HHHHHH
Confidence 4555566666677777764 7899999984 3433333 478899999999999998888775 577666
Q ss_pred HhhcCCCCEEEEEeCCCCCCcccC--hHHH-HHHHH----cCCcEEEeccCCCCCchHHHHHHHHHHhC
Q 029875 77 CRVCENIPIVLCGNKVDVKNRQVK--AKQV-TFHRK----KNLQYYEISAKSNYNFEKPFLYLARKLAG 138 (186)
Q Consensus 77 ~~~~~~~p~ilv~nK~Dl~~~~~~--~~~~-~~~~~----~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 138 (186)
.. .+.|+++|+||+|+.+.... .+.. .+... .+++++++||++|.|++++|..+.+.+..
T Consensus 283 ~~--~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~SA~tg~~v~~l~~~i~~~~~~ 349 (436)
T 2hjg_A 283 HE--AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKASEN 349 (436)
T ss_dssp HH--TTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHHHHHHH
T ss_pred HH--cCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEEEEecccCCCHHHHHHHHHHHHHH
Confidence 54 47999999999999753221 1222 22222 35789999999999999999999988764
No 140
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.60 E-value=1.2e-15 Score=122.53 Aligned_cols=113 Identities=20% Similarity=0.314 Sum_probs=91.2
Q ss_pred EEEEEEeCCCcc----ccCCcccccccc---CcEEEEEEeCCC---hhhHHhHHHHHHHHHhhc---CCCCEEEEEeCCC
Q 029875 27 IRFYCWDTAGQE----KFGGLRDGYYIH---GQCAIIMFDVTA---RLTYKNVPTWHRDLCRVC---ENIPIVLCGNKVD 93 (186)
Q Consensus 27 ~~l~l~Dt~G~~----~~~~~~~~~~~~---ad~vilv~D~~~---~~s~~~i~~~~~~~~~~~---~~~p~ilv~nK~D 93 (186)
..+.||||||+. .+..+...+++. ++++|+|+|+++ +.+++++..|...+..+. .+.|+++|+||+|
T Consensus 206 ~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~D 285 (342)
T 1lnz_A 206 RSFVMADLPGLIEGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMD 285 (342)
T ss_dssp CEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTT
T ss_pred ceEEEecCCCCcccccccchhHHHHHHHHHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECcc
Confidence 478899999964 345566666654 999999999998 788999999999988864 4799999999999
Q ss_pred CCCcccChHHHHHHHHcC--CcEEEeccCCCCCchHHHHHHHHHHhCCCC
Q 029875 94 VKNRQVKAKQVTFHRKKN--LQYYEISAKSNYNFEKPFLYLARKLAGDPN 141 (186)
Q Consensus 94 l~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~ 141 (186)
+.... .....++..++ .+++++||+++.|+++++.+|.+.+.+...
T Consensus 286 l~~~~--e~~~~l~~~l~~~~~v~~iSA~tg~gi~eL~~~l~~~l~~~~~ 333 (342)
T 1lnz_A 286 MPEAA--ENLEAFKEKLTDDYPVFPISAVTREGLRELLFEVANQLENTPE 333 (342)
T ss_dssp STTHH--HHHHHHHHHCCSCCCBCCCSSCCSSTTHHHHHHHHHHHTSCCC
T ss_pred CCCCH--HHHHHHHHHhhcCCCEEEEECCCCcCHHHHHHHHHHHHhhCcc
Confidence 97532 22345566665 689999999999999999999999976553
No 141
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.59 E-value=3.1e-15 Score=125.00 Aligned_cols=122 Identities=17% Similarity=0.093 Sum_probs=88.3
Q ss_pred cccceEEEEEEEEEECCeEEEEEEEeCCCcc-ccCCc--------cccccccCcEEEEEEeCCChhhHHhHHHHHHHHHh
Q 029875 8 KATIGVEVHPLDFFTNCGKIRFYCWDTAGQE-KFGGL--------RDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR 78 (186)
Q Consensus 8 ~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~-~~~~~--------~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~ 78 (186)
.|++..++....+.+++. .+.||||||++ .+... ...+++.||++|+|+|++++.+++... +++.+
T Consensus 274 ~~gTT~d~~~~~i~~~g~--~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~-il~~l-- 348 (482)
T 1xzp_A 274 IPGTTRDVISEEIVIRGI--LFRIVDTAGVRSETNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRK-ILERI-- 348 (482)
T ss_dssp SSCCSSCSCCEEEEETTE--EEEEEESSCCCSSCCTTCCCCCHHHHHHHHHHCSEEEEEEETTSCCCHHHHH-HHHHH--
T ss_pred CCCeeeeeEEEEEecCCe--EEEEEECCCccccchhhHHHHHHHHHHHHhhcccEEEEEecCCCCCCHHHHH-HHHHh--
Confidence 344445666667777664 57899999998 65432 345788999999999999988776542 22222
Q ss_pred hcCCCCEEEEEeCCCCCCcccChHHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHh
Q 029875 79 VCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLA 137 (186)
Q Consensus 79 ~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 137 (186)
.+.|+++|+||+|+.+.....+...++ ..+.+++++||++|.|+++++.+|.+.+.
T Consensus 349 --~~~piivV~NK~DL~~~~~~~~~~~~~-~~~~~~i~iSAktg~Gi~eL~~~l~~~~~ 404 (482)
T 1xzp_A 349 --KNKRYLVVINKVDVVEKINEEEIKNKL-GTDRHMVKISALKGEGLEKLEESIYRETQ 404 (482)
T ss_dssp --TTSSEEEEEEECSSCCCCCHHHHHHHH-TCSTTEEEEEGGGTCCHHHHHHHHHHHTH
T ss_pred --cCCCEEEEEECcccccccCHHHHHHHh-cCCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 478999999999997532112222322 23468999999999999999999999865
No 142
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.59 E-value=4.3e-15 Score=121.80 Aligned_cols=112 Identities=16% Similarity=0.124 Sum_probs=87.9
Q ss_pred EEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCcccChHH--
Q 029875 26 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQ-- 103 (186)
Q Consensus 26 ~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~-- 103 (186)
...+.||||||++.|...+..+++.+|++|+|+|+++..++.+...|+..+... ...|+++|+||+|+.+.....+.
T Consensus 74 ~~~~~iiDtPGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~-~~~~iivviNK~Dl~~~~~~~~~~~ 152 (403)
T 3sjy_A 74 LRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII-GVKNLIIVQNKVDVVSKEEALSQYR 152 (403)
T ss_dssp EEEEEEEECCCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHH-TCCCEEEEEECGGGSCHHHHHHHHH
T ss_pred cceEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHc-CCCCEEEEEECccccchHHHHHHHH
Confidence 378999999999999999999999999999999999876666677777665544 24689999999999754322121
Q ss_pred --HHHHHHc---CCcEEEeccCCCCCchHHHHHHHHHHhC
Q 029875 104 --VTFHRKK---NLQYYEISAKSNYNFEKPFLYLARKLAG 138 (186)
Q Consensus 104 --~~~~~~~---~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 138 (186)
.++.... +++++++||++|.|++++++.|.+.+..
T Consensus 153 ~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~~ 192 (403)
T 3sjy_A 153 QIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYIKT 192 (403)
T ss_dssp HHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred HHHHHHHhhCCCCCEEEEEECCCCcChHHHHHHHHHhCCC
Confidence 1222222 4689999999999999999999987754
No 143
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.58 E-value=1.9e-14 Score=118.09 Aligned_cols=128 Identities=14% Similarity=0.060 Sum_probs=83.8
Q ss_pred cccc--cceEEEEEEEEEEC---------------C----eEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCC--
Q 029875 6 WGKA--TIGVEVHPLDFFTN---------------C----GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTA-- 62 (186)
Q Consensus 6 ~~~~--Tig~~~~~~~~~~~---------------~----~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~-- 62 (186)
++.+ |++..|....+... + ....+.||||||++.|...+...+..+|++|+|+|+++
T Consensus 39 e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~ 118 (408)
T 1s0u_A 39 ELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSFVDSPGHETLMATMLSGASLMDGAILVIAANEPC 118 (408)
T ss_dssp ----CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCS
T ss_pred cccCCcEEEecccccccccccccccccccccccccCcccccccEEEEEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCC
Confidence 4445 88877776555321 1 13789999999999998777777888999999999995
Q ss_pred --hhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCcccC----hHHHHHHHH---cCCcEEEeccCCCCCchHHHHHHH
Q 029875 63 --RLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK----AKQVTFHRK---KNLQYYEISAKSNYNFEKPFLYLA 133 (186)
Q Consensus 63 --~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~----~~~~~~~~~---~~~~~~~~Sa~~~~gi~~l~~~l~ 133 (186)
+.+++.+..| . .....|+++++||+|+.+.... .+..+++.. .+++++++||++|.|+++++++|.
T Consensus 119 ~~~qt~e~l~~~----~-~l~~~~iivv~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~ 193 (408)
T 1s0u_A 119 PQPQTKEHLMAL----E-ILGIDKIIIVQNKIDLVDEKQAEENYEQIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQ 193 (408)
T ss_dssp SCHHHHHHHHHH----H-HTTCCCEEEEEECTTSSCTTTTTTHHHHHHHHHTTSTTTTCCEEEC------CHHHHHHHHH
T ss_pred CCchhHHHHHHH----H-HcCCCeEEEEEEccCCCCHHHHHHHHHHHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHH
Confidence 4455444322 2 2234589999999999753321 223344443 257899999999999999999999
Q ss_pred HHHhC
Q 029875 134 RKLAG 138 (186)
Q Consensus 134 ~~i~~ 138 (186)
..+..
T Consensus 194 ~~i~~ 198 (408)
T 1s0u_A 194 DFIPT 198 (408)
T ss_dssp HHSCC
T ss_pred HhCCC
Confidence 87754
No 144
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.58 E-value=2.6e-15 Score=126.83 Aligned_cols=70 Identities=17% Similarity=0.162 Sum_probs=58.1
Q ss_pred eEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCc
Q 029875 25 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR 97 (186)
Q Consensus 25 ~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 97 (186)
..+.+.||||||+.+|...+..+++.+|++|+|+|+++..+.+...-|. .+.. .++|+++|+||+|+...
T Consensus 80 ~~~~i~liDTPG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~-~~~~--~~iPiivviNK~Dl~~~ 149 (528)
T 3tr5_A 80 KDYLINLLDTPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLME-VCRL--RHTPIMTFINKMDRDTR 149 (528)
T ss_dssp TTEEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHH-HHHT--TTCCEEEEEECTTSCCS
T ss_pred CCEEEEEEECCCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHH-HHHH--cCCCEEEEEeCCCCccc
Confidence 4578999999999999999999999999999999999977776655553 3333 37899999999999753
No 145
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.57 E-value=1e-15 Score=127.74 Aligned_cols=119 Identities=18% Similarity=0.180 Sum_probs=69.1
Q ss_pred ccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCCh---hhHHhHHHHHHHHHhhc-CC
Q 029875 7 GKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTAR---LTYKNVPTWHRDLCRVC-EN 82 (186)
Q Consensus 7 ~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~---~s~~~i~~~~~~~~~~~-~~ 82 (186)
..+|++..+.. +..+ ...+.||||||+++|...+..+++.+|++|+|+|+++. .+|+...+|.+.+.... .+
T Consensus 105 ~giTi~~~~~~--~~~~--~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~ 180 (467)
T 1r5b_A 105 KGKTVEVGRAY--FETE--HRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQG 180 (467)
T ss_dssp --------CCE--EECS--SEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTT
T ss_pred cCceEEeeeEE--EecC--CeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcC
Confidence 45677665543 3333 46789999999999999989999999999999999986 35543334444333322 46
Q ss_pred CC-EEEEEeCCCCCCcc--------cChHHHHHHHHc-------CCcEEEeccCCCCCchHHH
Q 029875 83 IP-IVLCGNKVDVKNRQ--------VKAKQVTFHRKK-------NLQYYEISAKSNYNFEKPF 129 (186)
Q Consensus 83 ~p-~ilv~nK~Dl~~~~--------~~~~~~~~~~~~-------~~~~~~~Sa~~~~gi~~l~ 129 (186)
.| +++++||+|+.+.. +..+...++... +++++++||++|.|+.+++
T Consensus 181 vp~iivviNK~Dl~~~~~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 181 INHLVVVINKMDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp CSSEEEEEECTTSTTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred CCEEEEEEECccCCCccccHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence 77 99999999996421 112234555554 3569999999999998876
No 146
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.57 E-value=4.6e-16 Score=131.30 Aligned_cols=128 Identities=15% Similarity=0.117 Sum_probs=89.7
Q ss_pred ccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEE
Q 029875 7 GKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIV 86 (186)
Q Consensus 7 ~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~i 86 (186)
+.|+++.++....+...+ ...+.||||||++.|..++..+++.+|++|+|+|+++....+....| ..+.. .+.|++
T Consensus 33 ~~~giT~~i~~~~v~~~~-g~~i~~iDTPGhe~f~~~~~~~~~~aD~vILVVDa~dg~~~qt~e~l-~~~~~--~~vPiI 108 (537)
T 3izy_P 33 EAGGITQHIGAFLVSLPS-GEKITFLDTPGHAAFSAMRARGTQVTDIVILVVAADDGVMKQTVESI-QHAKD--AHVPIV 108 (537)
T ss_dssp SSCCBCCCTTSCCBCSSC-SSCCBCEECSSSCCTTTSBBSSSBSBSSCEEECBSSSCCCHHHHHHH-HHHHT--TTCCEE
T ss_pred cCCceeEEEeEEEEEeCC-CCEEEEEECCChHHHHHHHHHHHccCCEEEEEEECCCCccHHHHHHH-HHHHH--cCCcEE
Confidence 455666555544444322 23688999999999999999999999999999999986554433222 22222 478999
Q ss_pred EEEeCCCCCCcccC---hHHHHH---HHHc--CCcEEEeccCCCCCchHHHHHHHHHHhC
Q 029875 87 LCGNKVDVKNRQVK---AKQVTF---HRKK--NLQYYEISAKSNYNFEKPFLYLARKLAG 138 (186)
Q Consensus 87 lv~nK~Dl~~~~~~---~~~~~~---~~~~--~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 138 (186)
+++||+|+.+.... .....+ +..+ .++++++||++|.|++++|+.+...+..
T Consensus 109 VViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI~eLle~I~~l~~~ 168 (537)
T 3izy_P 109 LAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGENMMALAEATIALAEM 168 (537)
T ss_dssp ECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSSCSSHHHHHHHHHHHTT
T ss_pred EEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCCCCchhHHHHHHHhhhc
Confidence 99999999753221 111111 1111 2479999999999999999999987753
No 147
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.56 E-value=5.1e-15 Score=122.61 Aligned_cols=124 Identities=13% Similarity=0.112 Sum_probs=85.2
Q ss_pred ccccceEEEEEEEEEECCeEEEEEEEeCCCcccc---------CCccccccccCcEEEEEEeCCChhhHHh--HHHHHHH
Q 029875 7 GKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF---------GGLRDGYYIHGQCAIIMFDVTARLTYKN--VPTWHRD 75 (186)
Q Consensus 7 ~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~---------~~~~~~~~~~ad~vilv~D~~~~~s~~~--i~~~~~~ 75 (186)
..|++..+.....+.+++. .+++|||||++.. ...+..++++||++|+|+|+++..+..+ +..|+..
T Consensus 31 ~~~g~T~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ad~il~V~D~~~~~~~~d~~i~~~l~~ 108 (439)
T 1mky_A 31 DEEGVTRDPVQDTVEWYGK--TFKLVDTCGVFDNPQDIISQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRK 108 (439)
T ss_dssp -------CCSEEEEEETTE--EEEEEECTTTTSSGGGCCCHHHHHHHHHHHTTCSEEEEEEETTTCCCHHHHHHHHHHHH
T ss_pred CCCCCccceeeEEEEECCe--EEEEEECCCccccccchHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHH
Confidence 3455555666667777776 4688999998752 3345678899999999999988655432 3334332
Q ss_pred HHhhcCCCCEEEEEeCCCCCCcccChHH-HHHHHHcCC-cEEEeccCCCCCchHHHHHHHHHHhCC
Q 029875 76 LCRVCENIPIVLCGNKVDVKNRQVKAKQ-VTFHRKKNL-QYYEISAKSNYNFEKPFLYLARKLAGD 139 (186)
Q Consensus 76 ~~~~~~~~p~ilv~nK~Dl~~~~~~~~~-~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 139 (186)
.+.|+++|+||+|+.... .... ..++ .+++ +++++||++|.|+.++|+++.+.+.+.
T Consensus 109 -----~~~p~ilv~NK~D~~~~~-~~~~~~~~~-~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~~~ 167 (439)
T 1mky_A 109 -----STVDTILVANKAENLREF-EREVKPELY-SLGFGEPIPVSAEHNINLDTMLETIIKKLEEK 167 (439)
T ss_dssp -----HTCCEEEEEESCCSHHHH-HHHTHHHHG-GGSSCSCEECBTTTTBSHHHHHHHHHHHHHHT
T ss_pred -----cCCCEEEEEeCCCCcccc-HHHHHHHHH-hcCCCCEEEEeccCCCCHHHHHHHHHHhcccc
Confidence 278999999999985321 1122 3333 4566 799999999999999999999998743
No 148
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.56 E-value=1.1e-14 Score=120.54 Aligned_cols=121 Identities=18% Similarity=0.168 Sum_probs=81.8
Q ss_pred cccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhh---HHhHHHHHHHHHhh-cCCC
Q 029875 8 KATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLT---YKNVPTWHRDLCRV-CENI 83 (186)
Q Consensus 8 ~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s---~~~i~~~~~~~~~~-~~~~ 83 (186)
.+.+.+++....+..+ ...+.||||||+++|...+..+++.||++|+|+|+++... |+...++.+.+... ..+.
T Consensus 78 ~~GiTid~~~~~~~~~--~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v 155 (439)
T 3j2k_7 78 DKGKTVEVGRAYFETE--KKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGV 155 (439)
T ss_pred hcCceEEEeEEEEecC--CeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCC
Confidence 3555556655555444 4588999999999999988999999999999999998532 22111222222221 1356
Q ss_pred C-EEEEEeCCCCCCcc--------cChHHHHHHHHcC------CcEEEeccCCCCCchHHHH
Q 029875 84 P-IVLCGNKVDVKNRQ--------VKAKQVTFHRKKN------LQYYEISAKSNYNFEKPFL 130 (186)
Q Consensus 84 p-~ilv~nK~Dl~~~~--------~~~~~~~~~~~~~------~~~~~~Sa~~~~gi~~l~~ 130 (186)
| +++++||+|+.... +..+...++...+ ++++++||++|.|+.+++.
T Consensus 156 ~~iIvviNK~Dl~~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 156 KHLIVLINKMDDPTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred CeEEEEeecCCCcccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 7 99999999996421 1112224444444 4699999999999999765
No 149
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.55 E-value=1.5e-14 Score=114.23 Aligned_cols=96 Identities=16% Similarity=0.083 Sum_probs=80.2
Q ss_pred ccccCCccccccccCcEEEEEEeCCChh-hHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCccc---ChHHHHHHHHcCC
Q 029875 37 QEKFGGLRDGYYIHGQCAIIMFDVTARL-TYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV---KAKQVTFHRKKNL 112 (186)
Q Consensus 37 ~~~~~~~~~~~~~~ad~vilv~D~~~~~-s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~---~~~~~~~~~~~~~ 112 (186)
++++..+.+.+++++|++++|+|++++. ++..+..|+..+.. .+.|+++|+||+|+.+... ..+...++...++
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~--~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~g~ 143 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY--FKVEPVIVFNKIDLLNEEEKKELERWISIYRDAGY 143 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH--TTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHTTC
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh--CCCCEEEEEEcccCCCccccHHHHHHHHHHHHCCC
Confidence 7889999999999999999999999886 89888999987765 4799999999999975421 2233456667788
Q ss_pred cEEEeccCCCCCchHHHHHHHH
Q 029875 113 QYYEISAKSNYNFEKPFLYLAR 134 (186)
Q Consensus 113 ~~~~~Sa~~~~gi~~l~~~l~~ 134 (186)
+++++||++|.|+++++..+..
T Consensus 144 ~~~~~SA~~g~gi~~L~~~l~G 165 (302)
T 2yv5_A 144 DVLKVSAKTGEGIDELVDYLEG 165 (302)
T ss_dssp EEEECCTTTCTTHHHHHHHTTT
T ss_pred eEEEEECCCCCCHHHHHhhccC
Confidence 9999999999999999987643
No 150
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.55 E-value=7.3e-15 Score=122.22 Aligned_cols=124 Identities=12% Similarity=0.067 Sum_probs=81.4
Q ss_pred cccceEEEEEEEEEECCeEEEEEEEeCCCccccCCc--------cccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhh
Q 029875 8 KATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL--------RDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV 79 (186)
Q Consensus 8 ~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~--------~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~ 79 (186)
.|++..++....+.+++. .+.||||||++.+... ...+++.+|++|+|+|++++.+... ..|+..+
T Consensus 255 ~~gtT~d~~~~~i~~~g~--~v~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~~~~~-~~i~~~l--- 328 (462)
T 3geh_A 255 LPGTTRDVVESQLVVGGI--PVQVLDTAGIRETSDQVEKIGVERSRQAANTADLVLLTIDAATGWTTGD-QEIYEQV--- 328 (462)
T ss_dssp CTTCCHHHHHHEEEETTE--EEEECC--------------------CCCCSCSEEEEEEETTTCSCHHH-HHHHHHH---
T ss_pred CCCeeEEEEEEEEEECCE--EEEEEECCccccchhHHHHHHHHHHhhhhhcCCEEEEEeccCCCCCHHH-HHHHHhc---
Confidence 455556666566666765 5689999998766443 3346889999999999998766554 3454444
Q ss_pred cCCCCEEEEEeCCCCCCcccChHHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCCC
Q 029875 80 CENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDP 140 (186)
Q Consensus 80 ~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~ 140 (186)
...|+++|+||+|+.+.........+. .+.+++++||++|.|+++++.++.+.+....
T Consensus 329 -~~~piivV~NK~Dl~~~~~~~~~~~~~--~~~~~i~iSAktg~Gi~eL~~~i~~~~~~~~ 386 (462)
T 3geh_A 329 -KHRPLILVMNKIDLVEKQLITSLEYPE--NITQIVHTAAAQKQGIDSLETAILEIVQTGK 386 (462)
T ss_dssp -TTSCEEEEEECTTSSCGGGSTTCCCCT--TCCCEEEEBTTTTBSHHHHHHHHHHHHTTSS
T ss_pred -cCCcEEEEEECCCCCcchhhHHHHHhc--cCCcEEEEECCCCCCHHHHHHHHHHHHhccC
Confidence 347999999999997543222111111 3568999999999999999999999886543
No 151
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.54 E-value=2.1e-15 Score=124.77 Aligned_cols=107 Identities=15% Similarity=0.123 Sum_probs=79.2
Q ss_pred CCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc-----CC-CCEEEEEeCCCCCC
Q 029875 23 NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-----EN-IPIVLCGNKVDVKN 96 (186)
Q Consensus 23 ~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-----~~-~p~ilv~nK~Dl~~ 96 (186)
+...+.+.||||||+++|...+..+++.+|++|+|+|+++ .+|+.+..|..+..+.. .+ .|+++++||+|+.+
T Consensus 80 ~~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~ 158 (435)
T 1jny_A 80 ETKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTE 158 (435)
T ss_dssp ECSSCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSS
T ss_pred ecCCeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCC
Confidence 3455689999999999999888889999999999999999 68876544433332211 24 46999999999976
Q ss_pred cc--------cChHHHHHHHHcC-----CcEEEeccCCCCCchHHHH
Q 029875 97 RQ--------VKAKQVTFHRKKN-----LQYYEISAKSNYNFEKPFL 130 (186)
Q Consensus 97 ~~--------~~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~l~~ 130 (186)
.. +..+...++..++ ++++++||++|.|+.+++.
T Consensus 159 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~ 205 (435)
T 1jny_A 159 PPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSE 205 (435)
T ss_dssp STTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCS
T ss_pred ccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccccc
Confidence 21 1222345556555 6799999999999986654
No 152
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.53 E-value=1.3e-14 Score=121.47 Aligned_cols=119 Identities=19% Similarity=0.139 Sum_probs=85.0
Q ss_pred ccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCC---hhhHHhHHHHHHHHHhhcCCCCE
Q 029875 9 ATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTA---RLTYKNVPTWHRDLCRVCENIPI 85 (186)
Q Consensus 9 ~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~---~~s~~~i~~~~~~~~~~~~~~p~ 85 (186)
.|+...+.. +.+++ ..+.||||||++.|...+..+++.+|++|+|+|+++ +.+++.+ ..+.. .+.|+
T Consensus 59 iTi~~~~~~--~~~~~--~~i~iiDtPGh~~~~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l----~~~~~--~~ip~ 128 (482)
T 1wb1_A 59 ITIDIGFSA--FKLEN--YRITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHM----LILDH--FNIPI 128 (482)
T ss_dssp -----CCCE--EEETT--EEEEECCCSSHHHHHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHH----HHHHH--TTCCB
T ss_pred cEEecceEE--EEECC--EEEEEEECCChHHHHHHHHHHHhhCCEEEEEEecCCCccHHHHHHH----HHHHH--cCCCE
Confidence 455444443 33343 688999999999998888889999999999999998 4444433 22222 36889
Q ss_pred EEEEeCCCCCCccc----ChHHHHHHHHc----CCcEEEeccCCCCCchHHHHHHHHHHh
Q 029875 86 VLCGNKVDVKNRQV----KAKQVTFHRKK----NLQYYEISAKSNYNFEKPFLYLARKLA 137 (186)
Q Consensus 86 ilv~nK~Dl~~~~~----~~~~~~~~~~~----~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 137 (186)
++++||+|+.+... ..+...++... +.+++++||++|.|+++++++|.+.+.
T Consensus 129 IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 129 IVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISAKTGFGVDELKNLIITTLN 188 (482)
T ss_dssp CEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred EEEEECCCcccchhHHHHHHHHHHHHhhhcccccceEEEEECcCCCCHHHHHHHHHHhhc
Confidence 99999999975321 12223444444 578999999999999999999999875
No 153
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.53 E-value=1e-13 Score=118.46 Aligned_cols=104 Identities=21% Similarity=0.216 Sum_probs=78.7
Q ss_pred EEEEEeCCCccccCCccccccccCcEEEEEEeCCC---hhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCccc-----
Q 029875 28 RFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTA---RLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV----- 99 (186)
Q Consensus 28 ~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~---~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~----- 99 (186)
.+.||||||++.|..++..+++.+|++|+|+|+++ +.+++.+.. +.. .+.|+++++||+|+.+...
T Consensus 71 ~i~liDTPGhe~F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~----l~~--~~vPiIVViNKiDl~~~~~~~~~~ 144 (594)
T 1g7s_A 71 GLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNI----LRM--YRTPFVVAANKIDRIHGWRVHEGR 144 (594)
T ss_dssp EEEEECCCTTSCCTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHH----HHH--TTCCEEEEEECGGGSTTCCCCTTC
T ss_pred CEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHH----HHH--cCCeEEEEecccccccccccccCC
Confidence 58999999999999999999999999999999999 666665432 222 4789999999999964210
Q ss_pred ---------ChH-----------HHHHHHHcC---------------CcEEEeccCCCCCchHHHHHHHHHHh
Q 029875 100 ---------KAK-----------QVTFHRKKN---------------LQYYEISAKSNYNFEKPFLYLARKLA 137 (186)
Q Consensus 100 ---------~~~-----------~~~~~~~~~---------------~~~~~~Sa~~~~gi~~l~~~l~~~i~ 137 (186)
... ......+.+ ++++.+||++|.|+.++++++...+.
T Consensus 145 ~~~e~sa~~~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~ 217 (594)
T 1g7s_A 145 PFMETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQ 217 (594)
T ss_dssp CHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred chHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhcc
Confidence 000 001111111 37999999999999999999998775
No 154
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.52 E-value=1.3e-13 Score=113.23 Aligned_cols=129 Identities=14% Similarity=0.047 Sum_probs=91.2
Q ss_pred ccccc--cceEEEEEEEEEEC---------------C----eEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCC-
Q 029875 5 VWGKA--TIGVEVHPLDFFTN---------------C----GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTA- 62 (186)
Q Consensus 5 ~~~~~--Tig~~~~~~~~~~~---------------~----~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~- 62 (186)
.++.+ |++..|....+... + ....+.||||||++.|.......+..+|++|+|+|+++
T Consensus 40 ~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g 119 (410)
T 1kk1_A 40 EELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEP 119 (410)
T ss_dssp GGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSC
T ss_pred hhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEEEECCChHHHHHHHHhhhhhCCEEEEEEECCCC
Confidence 34445 88877776555321 1 13789999999999988777777888999999999995
Q ss_pred ---hhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCccc----ChHHHHHHHH---cCCcEEEeccCCCCCchHHHHHH
Q 029875 63 ---RLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV----KAKQVTFHRK---KNLQYYEISAKSNYNFEKPFLYL 132 (186)
Q Consensus 63 ---~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~----~~~~~~~~~~---~~~~~~~~Sa~~~~gi~~l~~~l 132 (186)
+.+++.+..| ... ...|+++++||+|+.+... ..+..+++.. .+++++++||++|.|+++++++|
T Consensus 120 ~~~~qt~e~l~~~----~~~-~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l 194 (410)
T 1kk1_A 120 CPRPQTREHLMAL----QII-GQKNIIIAQNKIELVDKEKALENYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAI 194 (410)
T ss_dssp SSCHHHHHHHHHH----HHH-TCCCEEEEEECGGGSCHHHHHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHH
T ss_pred CCChhHHHHHHHH----HHc-CCCcEEEEEECccCCCHHHHHHHHHHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHH
Confidence 3444443322 222 2468999999999976321 1122233333 35789999999999999999999
Q ss_pred HHHHhC
Q 029875 133 ARKLAG 138 (186)
Q Consensus 133 ~~~i~~ 138 (186)
...+..
T Consensus 195 ~~~~~~ 200 (410)
T 1kk1_A 195 EDFIPT 200 (410)
T ss_dssp HHHSCC
T ss_pred HHhCCC
Confidence 987754
No 155
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.51 E-value=4.1e-15 Score=123.05 Aligned_cols=126 Identities=17% Similarity=0.135 Sum_probs=78.8
Q ss_pred cccceEEEEEEEEEECCeEEEEEEEeCCCcc--------ccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhh
Q 029875 8 KATIGVEVHPLDFFTNCGKIRFYCWDTAGQE--------KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV 79 (186)
Q Consensus 8 ~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~--------~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~ 79 (186)
.+|.|+........+......+.+|||||++ .+...+..++++||++|+|+|+++..++.+ .|+..+.+.
T Consensus 32 ~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvD~~~~~~~~d--~~~~~~l~~ 109 (436)
T 2hjg_A 32 EDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAAD--EEVAKILYR 109 (436)
T ss_dssp ---------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHHHCSEEEEEEETTTCSCHHH--HHHHHHHTT
T ss_pred cCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHH--HHHHHHHHH
Confidence 4455655444444444444578999999986 566677888999999999999998766543 343333322
Q ss_pred cCCCCEEEEEeCCCCCCcccChHHHHHHHHcCC-cEEEeccCCCCCchHHHHHHHHHHhCC
Q 029875 80 CENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL-QYYEISAKSNYNFEKPFLYLARKLAGD 139 (186)
Q Consensus 80 ~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 139 (186)
.+.|+++|+||+|+.+... ...++. ..++ +++++||++|.|+.++++++.+.+.+.
T Consensus 110 -~~~pvilv~NK~D~~~~~~--~~~~~~-~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~~~ 166 (436)
T 2hjg_A 110 -TKKPVVLAVNKLDNTEMRA--NIYDFY-SLGFGEPYPISGTHGLGLGDLLDAVAEHFKNI 166 (436)
T ss_dssp -CCSCEEEEEECCCC-------CCCSSG-GGSSCCCEECBTTTTBTHHHHHHHHHHTGGGC
T ss_pred -cCCCEEEEEECccCccchh--hHHHHH-HcCCCCeEEEeCcCCCChHHHHHHHHHhcCcc
Confidence 4789999999999874321 111222 3454 789999999999999999999988653
No 156
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.50 E-value=6.2e-14 Score=110.71 Aligned_cols=114 Identities=18% Similarity=0.128 Sum_probs=82.7
Q ss_pred eEEEEEEEeCCCcc---------ccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCC
Q 029875 25 GKIRFYCWDTAGQE---------KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK 95 (186)
Q Consensus 25 ~~~~l~l~Dt~G~~---------~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~ 95 (186)
...++.+|||||+. .+......+++.+|++++|+|+++ -+ ....|+-.... ..+.|+++++||+|+.
T Consensus 54 ~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~l~~~D~vl~Vvd~~~-~~--~~~~~i~~~l~-~~~~P~ilvlNK~D~~ 129 (301)
T 1ega_A 54 GAYQAIYVDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTR-WT--PDDEMVLNKLR-EGKAPVILAVNKVDNV 129 (301)
T ss_dssp TTEEEEEESSSSCCHHHHHHHHHHHTCCTTSCCCCEEEEEEEEETTC-CC--HHHHHHHHHHH-SSSSCEEEEEESTTTC
T ss_pred CCeeEEEEECcCCCccchhhHHHHHHHHHHHHHhcCCEEEEEEeCCC-CC--HHHHHHHHHHH-hcCCCEEEEEECcccC
Confidence 34688899999987 455667788999999999999987 22 22334433222 1478999999999997
Q ss_pred C-cccChH-HHHHHHHcCC-cEEEeccCCCCCchHHHHHHHHHHhCCCCc
Q 029875 96 N-RQVKAK-QVTFHRKKNL-QYYEISAKSNYNFEKPFLYLARKLAGDPNL 142 (186)
Q Consensus 96 ~-~~~~~~-~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~~ 142 (186)
. +....+ ...+...++. .++.+||++|.|++++++.+...+.+.+..
T Consensus 130 ~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~~v~~l~~~i~~~l~~~~~~ 179 (301)
T 1ega_A 130 QEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHLPEATHH 179 (301)
T ss_dssp CCHHHHHHHHHHHHTTSCCSEEEECCTTTTTTHHHHHHHHHTTCCBCCCS
T ss_pred ccHHHHHHHHHHHHHhcCcCceEEEECCCCCCHHHHHHHHHHhCCcCCCC
Confidence 5 222112 2344445565 699999999999999999999888766543
No 157
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.50 E-value=1.4e-14 Score=121.24 Aligned_cols=107 Identities=17% Similarity=0.091 Sum_probs=71.4
Q ss_pred ECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhH-----HHHHHHHHhhcCCCCEEEEEeCCCCCC
Q 029875 22 TNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-----PTWHRDLCRVCENIPIVLCGNKVDVKN 96 (186)
Q Consensus 22 ~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i-----~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 96 (186)
++...+.+.||||||+++|...+..+++.||++|+|+|+++..++..+ ..+...+.......|+++|+||+|+.+
T Consensus 106 ~~~~~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvviNK~Dl~~ 185 (483)
T 3p26_A 106 FSTHRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVD 185 (483)
T ss_dssp EECSSCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTCCCEEEEEECGGGGT
T ss_pred EecCCceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCCcEEEEEECcCccc
Confidence 344567899999999999999999999999999999999987543221 111112222223357999999999975
Q ss_pred c-cc-ChH----HHHHHHHc-----CCcEEEeccCCCCCchHH
Q 029875 97 R-QV-KAK----QVTFHRKK-----NLQYYEISAKSNYNFEKP 128 (186)
Q Consensus 97 ~-~~-~~~----~~~~~~~~-----~~~~~~~Sa~~~~gi~~l 128 (186)
. .. ..+ ...+.... +++++++||++|.|+.++
T Consensus 186 ~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~el 228 (483)
T 3p26_A 186 WSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 228 (483)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSSS
T ss_pred chHHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCcccc
Confidence 2 11 111 12333333 357999999999999863
No 158
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.49 E-value=9.5e-15 Score=119.78 Aligned_cols=115 Identities=13% Similarity=0.033 Sum_probs=84.6
Q ss_pred EEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCC-EEEEEeCCCCCCcc
Q 029875 20 FFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKNRQ 98 (186)
Q Consensus 20 ~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~ 98 (186)
..++.....+.||||||+++|...+..+++.+|++|+|+|+++.... ....|+..+... +.| +++++||+|+.+..
T Consensus 68 ~~~~~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~~-qt~~~l~~~~~~--~ip~iivviNK~Dl~~~~ 144 (405)
T 2c78_A 68 VEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMP-QTREHILLARQV--GVPYIVVFMNKVDMVDDP 144 (405)
T ss_dssp EEEECSSCEEEEEECCCSGGGHHHHHHHHTTCSSEEEEEETTTCCCH-HHHHHHHHHHHT--TCCCEEEEEECGGGCCCH
T ss_pred eEeccCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEECCCCCcH-HHHHHHHHHHHc--CCCEEEEEEECccccCcH
Confidence 34444557889999999999988888889999999999999986543 345566555443 678 89999999997421
Q ss_pred -c----ChHHHHHHHHcC-----CcEEEeccCCCCC------------------chHHHHHHHHHHh
Q 029875 99 -V----KAKQVTFHRKKN-----LQYYEISAKSNYN------------------FEKPFLYLARKLA 137 (186)
Q Consensus 99 -~----~~~~~~~~~~~~-----~~~~~~Sa~~~~g------------------i~~l~~~l~~~i~ 137 (186)
. ..+...++..++ ++++++||++|.| +.++++.+...+.
T Consensus 145 ~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp 211 (405)
T 2c78_A 145 ELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIP 211 (405)
T ss_dssp HHHHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHhcccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcC
Confidence 1 112335555554 6899999999987 6777777776654
No 159
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.49 E-value=3.3e-14 Score=117.59 Aligned_cols=103 Identities=20% Similarity=0.170 Sum_probs=75.9
Q ss_pred eEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCcc------
Q 029875 25 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ------ 98 (186)
Q Consensus 25 ~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~------ 98 (186)
....+.||||||+++|...+..+++.+|++|+|+|+++....+ ...|+..+... ...|+++|+||+|+.+..
T Consensus 102 ~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~q-t~~~l~~~~~~-~~~~iIvviNK~Dl~~~~~~~~~~ 179 (434)
T 1zun_B 102 AKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQ-TRRHSYIASLL-GIKHIVVAINKMDLNGFDERVFES 179 (434)
T ss_dssp SSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHH-HHHHHHHHHHT-TCCEEEEEEECTTTTTSCHHHHHH
T ss_pred CCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHH-HHHHHHHHHHc-CCCeEEEEEEcCcCCcccHHHHHH
Confidence 4567899999999999888888899999999999999864322 33444444332 223699999999997521
Q ss_pred cChHHHHHHHHcC-----CcEEEeccCCCCCchHHH
Q 029875 99 VKAKQVTFHRKKN-----LQYYEISAKSNYNFEKPF 129 (186)
Q Consensus 99 ~~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~l~ 129 (186)
+..+...+++.++ ++++++||++|.|+.+++
T Consensus 180 i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~ 215 (434)
T 1zun_B 180 IKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKS 215 (434)
T ss_dssp HHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCC
T ss_pred HHHHHHHHHHHhCCCccCceEEEEeccCCCCccccc
Confidence 1122335566666 679999999999999854
No 160
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.48 E-value=4e-14 Score=115.81 Aligned_cols=113 Identities=10% Similarity=-0.039 Sum_probs=82.6
Q ss_pred ECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCC-EEEEEeCCCCCCcc--
Q 029875 22 TNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKNRQ-- 98 (186)
Q Consensus 22 ~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~-- 98 (186)
++.....+.||||||+++|...+..+++.+|++|+|+|+++....+.. .++..+.. .+.| +++++||+|+.+..
T Consensus 61 ~~~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~-e~l~~~~~--~~vp~iivviNK~Dl~~~~~~ 137 (397)
T 1d2e_A 61 YSTAARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPMPQTR-EHLLLARQ--IGVEHVVVYVNKADAVQDSEM 137 (397)
T ss_dssp EECSSCEEEEEECSSHHHHHHHHHHTSSCCSEEEEEEETTTCSCHHHH-HHHHHHHH--TTCCCEEEEEECGGGCSCHHH
T ss_pred eccCCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCCCHHHH-HHHHHHHH--cCCCeEEEEEECcccCCCHHH
Confidence 344556888999999999988888889999999999999986443332 23333333 3678 78999999997421
Q ss_pred ---cChHHHHHHHHcC-----CcEEEeccCCCCC----------chHHHHHHHHHHh
Q 029875 99 ---VKAKQVTFHRKKN-----LQYYEISAKSNYN----------FEKPFLYLARKLA 137 (186)
Q Consensus 99 ---~~~~~~~~~~~~~-----~~~~~~Sa~~~~g----------i~~l~~~l~~~i~ 137 (186)
...+..+++..++ ++++++||++|.| +.++++.+...+.
T Consensus 138 ~~~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p 194 (397)
T 1d2e_A 138 VELVELEIRELLTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIP 194 (397)
T ss_dssp HHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHcCCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCC
Confidence 1123345666655 5899999999774 8888988887765
No 161
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.47 E-value=6e-14 Score=113.76 Aligned_cols=123 Identities=4% Similarity=-0.125 Sum_probs=87.4
Q ss_pred ccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCE-
Q 029875 7 GKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI- 85 (186)
Q Consensus 7 ~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~- 85 (186)
+..|++..+.. + ......+.||||||+++|.......++.+|++|+|+| +. ..+.+...|+..+... +.|.
T Consensus 44 ~giTi~~~~~~--~--~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd-~~-g~~~qt~e~~~~~~~~--~i~~~ 115 (370)
T 2elf_A 44 KGTSSDITMYN--N--DKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP-PQ-GLDAHTGECIIALDLL--GFKHG 115 (370)
T ss_dssp EEEESSSEEEE--E--CSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-TT-CCCHHHHHHHHHHHHT--TCCEE
T ss_pred CCEEEEeeEEE--E--ecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-CC-CCcHHHHHHHHHHHHc--CCCeE
Confidence 34566665543 2 3344579999999999998777778899999999999 43 3444555666555543 5777
Q ss_pred EEEEe-CCCCCCcccCh----HHHHHHHHc---CCcEEE--eccCC---CCCchHHHHHHHHHHhC
Q 029875 86 VLCGN-KVDVKNRQVKA----KQVTFHRKK---NLQYYE--ISAKS---NYNFEKPFLYLARKLAG 138 (186)
Q Consensus 86 ilv~n-K~Dl~~~~~~~----~~~~~~~~~---~~~~~~--~Sa~~---~~gi~~l~~~l~~~i~~ 138 (186)
++++| |+|+ +..... +..+++... .+++++ +||++ |.|++++++.|.+.+..
T Consensus 116 ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~gi~~L~~~l~~~~~~ 180 (370)
T 2elf_A 116 IIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTNKSAKNPFEGVDELKARINEVAEK 180 (370)
T ss_dssp EEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTTTHHHHHHHHHHHHHH
T ss_pred EEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEecccccccCcCCCCHHHHHHHHHhhccc
Confidence 89999 9999 432111 222333333 368999 99999 99999999999987643
No 162
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.46 E-value=1.8e-14 Score=116.45 Aligned_cols=129 Identities=15% Similarity=0.210 Sum_probs=71.7
Q ss_pred cccceEEEEEEEEEECCeEEEEEEEeCCCc-------cccCCccc-------cccccCcEE-----------EEEEeCCC
Q 029875 8 KATIGVEVHPLDFFTNCGKIRFYCWDTAGQ-------EKFGGLRD-------GYYIHGQCA-----------IIMFDVTA 62 (186)
Q Consensus 8 ~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~-------~~~~~~~~-------~~~~~ad~v-----------ilv~D~~~ 62 (186)
.||+++++....+..++..+.+.+|||+|+ +.|..++. .|++.++++ ++||++++
T Consensus 76 ~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~ 155 (361)
T 2qag_A 76 ERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISP 155 (361)
T ss_dssp --CEEEEEEEEC----CEEEEEEEEC--------------CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECS
T ss_pred CCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEec
Confidence 478888887777777788899999999999 77777776 666655433 24455443
Q ss_pred -hhhHHhHH-HHHHHHHhhcCCCCEEEEEeCCCCCCcc-cCh---HHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHH
Q 029875 63 -RLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ-VKA---KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 136 (186)
Q Consensus 63 -~~s~~~i~-~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~---~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 136 (186)
..++..+. .|+..+ ..+.|+|+|+||+|+.... +.. ....++..++++++++||++|.| ++.|..+.+.+
T Consensus 156 ~~~~l~~~d~~~~~~l---~~~~piIlV~NK~Dl~~~~ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i 231 (361)
T 2qag_A 156 FGHGLKPLDVAFMKAI---HNKVNIVPVIAKADTLTLKERERLKKRILDEIEEHNIKIYHLPDAESDE-DEDFKEQTRLL 231 (361)
T ss_dssp SSSSCCHHHHHHHHHT---CS-SCEEEEEECCSSSCHHHHHHHHHHHHHHTTCC-CCSCCCC----------CHHHHHHH
T ss_pred CCCCcchhHHHHHHHh---ccCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEeCCCcCCCc-chhHHHHHHHH
Confidence 34555544 344443 3579999999999997532 221 23355666788999999999999 88888888888
Q ss_pred hCCC
Q 029875 137 AGDP 140 (186)
Q Consensus 137 ~~~~ 140 (186)
....
T Consensus 232 ~~~i 235 (361)
T 2qag_A 232 KASI 235 (361)
T ss_dssp HHTC
T ss_pred HhcC
Confidence 6654
No 163
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.46 E-value=3.4e-14 Score=110.65 Aligned_cols=127 Identities=14% Similarity=0.123 Sum_probs=73.9
Q ss_pred cccceEEEEEEEEEECCeEEEEEEEeCCCcccc-------CCcc-------ccccc-------------cCcEEEEEEeC
Q 029875 8 KATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF-------GGLR-------DGYYI-------------HGQCAIIMFDV 60 (186)
Q Consensus 8 ~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~-------~~~~-------~~~~~-------------~ad~vilv~D~ 60 (186)
.||++.++....+..++..+.+.||||||.... ..+. ..++. .+|+++++++.
T Consensus 46 ~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~ 125 (274)
T 3t5d_A 46 KKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAP 125 (274)
T ss_dssp ---CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECS
T ss_pred CCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecC
Confidence 789999998888877888899999999997432 1111 22222 37899999987
Q ss_pred CChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCcccCh----HHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHH
Q 029875 61 TARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA----KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 136 (186)
Q Consensus 61 ~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~----~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 136 (186)
+...-...-..+++.+.. ..|+++|+||+|+....... ...+.....+++++.+||+++.|+.+++.+|.+.+
T Consensus 126 ~~~~~~~~d~~~l~~l~~---~~pvi~V~nK~D~~~~~e~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~~ 202 (274)
T 3t5d_A 126 SGHGLKPLDIEFMKRLHE---KVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRL 202 (274)
T ss_dssp CCSSCCHHHHHHHHHHTT---TSCEEEEESSGGGSCHHHHHHHHHHHHHHHHHTTCCCCCC-----------CHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHhc---cCCEEEEEeccCCCCHHHHHHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhcCC
Confidence 763211111234444443 79999999999986432211 12344456788999999999999999999998766
Q ss_pred h
Q 029875 137 A 137 (186)
Q Consensus 137 ~ 137 (186)
.
T Consensus 203 p 203 (274)
T 3t5d_A 203 P 203 (274)
T ss_dssp S
T ss_pred C
Confidence 3
No 164
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.46 E-value=8.9e-15 Score=122.52 Aligned_cols=105 Identities=15% Similarity=0.189 Sum_probs=75.7
Q ss_pred EEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCcc---cChHH
Q 029875 27 IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ---VKAKQ 103 (186)
Q Consensus 27 ~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~---~~~~~ 103 (186)
..+.||||||++.|..++...++.+|++|+|+|+++....+.... +..+.. .+.|+++++||+|+.+.. +....
T Consensus 51 ~~i~~iDTPGhe~f~~~~~~~~~~aD~aILVVda~~g~~~qT~e~-l~~~~~--~~vPiIVviNKiDl~~~~~~~v~~~l 127 (501)
T 1zo1_I 51 GMITFLDTPGHAAFTSMRARGAQATDIVVLVVAADDGVMPQTIEA-IQHAKA--AQVPVVVAVNKIDKPEADPDRVKNEL 127 (501)
T ss_dssp SCCCEECCCTTTCCTTSBCSSSBSCSSEEEEEETTTBSCTTTHHH-HHHHHH--TTCCEEEEEECSSSSTTCCCCTTCCC
T ss_pred EEEEEEECCCcHHHHHHHHHHHhhCCEEEEEeecccCccHHHHHH-HHHHHh--cCceEEEEEEeccccccCHHHHHHHH
Confidence 467899999999999999999999999999999988432222222 222222 478999999999997421 11110
Q ss_pred ---HHHHHHcC--CcEEEeccCCCCCchHHHHHHHH
Q 029875 104 ---VTFHRKKN--LQYYEISAKSNYNFEKPFLYLAR 134 (186)
Q Consensus 104 ---~~~~~~~~--~~~~~~Sa~~~~gi~~l~~~l~~ 134 (186)
..++..++ ++++++||++|.|++++|+++..
T Consensus 128 ~~~~~~~~~~~~~~~~v~vSAktG~gI~eLle~I~~ 163 (501)
T 1zo1_I 128 SQYGILPEEWGGESQFVHVSAKAGTGIDELLDAILL 163 (501)
T ss_dssp CCCCCCTTCCSSSCEEEECCTTTCTTCTTHHHHTTT
T ss_pred HHhhhhHHHhCCCccEEEEeeeeccCcchhhhhhhh
Confidence 01112222 68999999999999999999874
No 165
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.44 E-value=6.1e-14 Score=126.13 Aligned_cols=126 Identities=13% Similarity=0.046 Sum_probs=87.7
Q ss_pred ccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCC-EEE
Q 029875 9 ATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVL 87 (186)
Q Consensus 9 ~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p-~il 87 (186)
++.|+++....+.+++....+.||||||+++|......+++.+|++|+|+|+++.... +...|+..+... +.| +|+
T Consensus 341 rerGITIdva~v~f~~~~~kI~IIDTPGHedF~~~mi~gas~AD~aILVVDAtdGv~~-QTrEhL~ll~~l--gIP~IIV 417 (1289)
T 3avx_A 341 KARGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMP-QTREHILLGRQV--GVPYIIV 417 (1289)
T ss_dssp -------CCSCEEEECSSCEEEEEECCCHHHHHHHHHHTSCCCSEEEEEEETTTCSCT-THHHHHHHHHHH--TCSCEEE
T ss_pred ccCceeEEEEEEEEcCCCEEEEEEECCChHHHHHHHHHHHhhCCEEEEEEcCCccCcH-HHHHHHHHHHHc--CCCeEEE
Confidence 4556555443444555667899999999999988888889999999999999986433 334555555443 678 889
Q ss_pred EEeCCCCCCcc-----cChHHHHHHHHcC-----CcEEEeccCCC--------CCchHHHHHHHHHHh
Q 029875 88 CGNKVDVKNRQ-----VKAKQVTFHRKKN-----LQYYEISAKSN--------YNFEKPFLYLARKLA 137 (186)
Q Consensus 88 v~nK~Dl~~~~-----~~~~~~~~~~~~~-----~~~~~~Sa~~~--------~gi~~l~~~l~~~i~ 137 (186)
++||+|+.+.. +..+...++...+ ++++++||++| .||.++++.+...+.
T Consensus 418 VINKiDLv~d~e~le~i~eEi~elLk~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip 485 (1289)
T 3avx_A 418 FLNKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIP 485 (1289)
T ss_dssp EEECCTTCCCHHHHHHHHHHHHHHHHHTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSC
T ss_pred EEeecccccchhhHHHHHHHHHHHHHhccccccceeEEEEEeccCCCCCccccccchhhHhHHhhhcC
Confidence 99999997521 1123345566655 58999999999 468888888887664
No 166
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.43 E-value=2.2e-13 Score=105.00 Aligned_cols=132 Identities=4% Similarity=-0.096 Sum_probs=82.0
Q ss_pred cccc-ceEEEEEEEEEECCeEEEEEEEeCCCccccCCccc-----------cccccCcEEEEEEeCCChhhH-HhHHHHH
Q 029875 7 GKAT-IGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRD-----------GYYIHGQCAIIMFDVTARLTY-KNVPTWH 73 (186)
Q Consensus 7 ~~~T-ig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~-----------~~~~~ad~vilv~D~~~~~s~-~~i~~~~ 73 (186)
+.|+ +..+.....+..++ ..+.||||||+..+..... .+++++|++|+|+|+++.... ..+..|+
T Consensus 52 ~~~~~~t~~~~~~~~~~~~--~~i~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l 129 (260)
T 2xtp_A 52 LGSQTLTKTCSKSQGSWGN--REIVIIDTPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRV 129 (260)
T ss_dssp TTSCCCCCSCEEEEEEETT--EEEEEEECCGGGGSSCCCHHHHHHHHHHHHHHTTCCSEEEEEEETTCCCHHHHHHHHHH
T ss_pred CCCCceeeeeEEEEEEeCC--CEEEEEECcCCCCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHH
Confidence 3443 33344444444444 4688999999877654322 267889999999999862222 2223344
Q ss_pred HHHHhhcCCCCEEEEEe-CCCCCCcccCh--------HHHHHHHHcCCc---E--EEeccCCCCCchHHHHHHHHHHhCC
Q 029875 74 RDLCRVCENIPIVLCGN-KVDVKNRQVKA--------KQVTFHRKKNLQ---Y--YEISAKSNYNFEKPFLYLARKLAGD 139 (186)
Q Consensus 74 ~~~~~~~~~~p~ilv~n-K~Dl~~~~~~~--------~~~~~~~~~~~~---~--~~~Sa~~~~gi~~l~~~l~~~i~~~ 139 (186)
..+.......|.++++| |+|+.+..... ....++...+.. + +++||++|.|++++|..+.+.+...
T Consensus 130 ~~~~~~~~~~~~i~vv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~~ 209 (260)
T 2xtp_A 130 KEIFGEDAMGHTIVLFTHKEDLNGGSLMDYMHDSDNKALSKLVAACGGRICAFNNRAEGSNQDDQVKELMDCIEDLLMEK 209 (260)
T ss_dssp HHHHCGGGGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHHHHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHhCchhhccEEEEEEcccccCCccHHHHHHhcchHHHHHHHHHhCCeEEEecCcccccccHHHHHHHHHHHHHHHHhC
Confidence 33322111356666666 99997542211 122355555432 2 7899999999999999999999875
Q ss_pred C
Q 029875 140 P 140 (186)
Q Consensus 140 ~ 140 (186)
.
T Consensus 210 ~ 210 (260)
T 2xtp_A 210 N 210 (260)
T ss_dssp T
T ss_pred C
Confidence 5
No 167
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.43 E-value=4.4e-14 Score=121.23 Aligned_cols=105 Identities=15% Similarity=0.102 Sum_probs=72.4
Q ss_pred CeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChh---hHHhHHHHHHHHHh--hcCCCCEEEEEeCCCCCCcc
Q 029875 24 CGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARL---TYKNVPTWHRDLCR--VCENIPIVLCGNKVDVKNRQ 98 (186)
Q Consensus 24 ~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~---s~~~i~~~~~~~~~--~~~~~p~ilv~nK~Dl~~~~ 98 (186)
...+++.||||||+++|...+..+++.||++|+|+|+++.. +|.....+...+.. .....|+|||+||+|+.+..
T Consensus 242 ~~~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~~~~ 321 (611)
T 3izq_1 242 THRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWS 321 (611)
T ss_dssp CSSCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTTTTTC
T ss_pred cCCceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEecccccchh
Confidence 35568899999999999999999999999999999999742 11111222222222 12234599999999997521
Q ss_pred -c-----ChHHHHHHHHcC-----CcEEEeccCCCCCchHH
Q 029875 99 -V-----KAKQVTFHRKKN-----LQYYEISAKSNYNFEKP 128 (186)
Q Consensus 99 -~-----~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~l 128 (186)
. ..+...+....+ ++++++||++|.||.++
T Consensus 322 ~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 322 QQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred HHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 1 112223444443 58999999999999976
No 168
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.42 E-value=1.2e-13 Score=114.91 Aligned_cols=115 Identities=16% Similarity=0.172 Sum_probs=79.0
Q ss_pred cccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChh---hHH---hHHHHHHHHHhhcC
Q 029875 8 KATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARL---TYK---NVPTWHRDLCRVCE 81 (186)
Q Consensus 8 ~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~---s~~---~i~~~~~~~~~~~~ 81 (186)
..|+...+. .+ +.....+.||||||+++|...+..+++.+|++|+|+|+++.. +|+ ....++..+.. .
T Consensus 70 GiTi~~~~~--~~--~~~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~--~ 143 (458)
T 1f60_A 70 GITIDIALW--KF--ETPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT--L 143 (458)
T ss_dssp TCCCSCSCE--EE--ECSSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH--T
T ss_pred CcEEEEEEE--EE--ecCCceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH--c
Confidence 345555443 22 335568999999999999988889999999999999999763 342 22222222222 3
Q ss_pred CCC-EEEEEeCCCCCCc-c-----cChHHHHHHHHcC-----CcEEEeccCCCCCchHH
Q 029875 82 NIP-IVLCGNKVDVKNR-Q-----VKAKQVTFHRKKN-----LQYYEISAKSNYNFEKP 128 (186)
Q Consensus 82 ~~p-~ilv~nK~Dl~~~-~-----~~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~l 128 (186)
+.| +++++||+|+.+. . +..+...++..++ ++++++||++|.|+.++
T Consensus 144 ~v~~iivviNK~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~ 202 (458)
T 1f60_A 144 GVRQLIVAVNKMDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA 202 (458)
T ss_dssp TCCEEEEEEECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred CCCeEEEEEEccccccCCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence 565 9999999999731 1 1122334555554 68999999999999754
No 169
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.42 E-value=7e-13 Score=109.75 Aligned_cols=126 Identities=16% Similarity=0.130 Sum_probs=80.2
Q ss_pred cccceEEEEEEEEEECCeEEEEEEEeCCCccccCCcc------------ccccccCcEEEEEEeCCChhhHHhHHHHHHH
Q 029875 8 KATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLR------------DGYYIHGQCAIIMFDVTARLTYKNVPTWHRD 75 (186)
Q Consensus 8 ~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~------------~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~ 75 (186)
.|++..+.....+.++|. .+.+|||+|+.++.... ..+++.++++++|+|+++..++++. .+...
T Consensus 211 ~~gtT~d~~~~~i~~~g~--~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i~~ad~vllv~d~~~~~~~~~~-~i~~~ 287 (439)
T 1mky_A 211 IPGTTRDPVDDEVFIDGR--KYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQ-RMAGL 287 (439)
T ss_dssp CC------CCEEEEETTE--EEEESSCSCC-----------CCSCCHHHHHHHHHCSEEEEEEETTTCCCHHHH-HHHHH
T ss_pred CCCCcCCceEEEEEECCE--EEEEEECCCCccccccchhhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHH-HHHHH
Confidence 344445555566777776 46799999985543221 2356789999999999987666542 22333
Q ss_pred HHhhcCCCCEEEEEeCCCCCCcc-cChH-HH-HHHHH----cCCcEEEeccCCCCCchHHHHHHHHHHhC
Q 029875 76 LCRVCENIPIVLCGNKVDVKNRQ-VKAK-QV-TFHRK----KNLQYYEISAKSNYNFEKPFLYLARKLAG 138 (186)
Q Consensus 76 ~~~~~~~~p~ilv~nK~Dl~~~~-~~~~-~~-~~~~~----~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 138 (186)
+.. .+.|+++|+||+|+.+.. ...+ .. .+... .+.+++++||++|.|++++|..+.+.+..
T Consensus 288 l~~--~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~ 355 (439)
T 1mky_A 288 MER--RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDRMIDAMNLAYAS 355 (439)
T ss_dssp HHH--TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred HHH--cCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 322 478999999999997532 2222 11 22222 24689999999999999999999887754
No 170
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.42 E-value=9e-14 Score=102.00 Aligned_cols=74 Identities=18% Similarity=0.171 Sum_probs=63.6
Q ss_pred eEEEEEEEeCCCccccCCcccccccc----CcEEEEEEeCC-ChhhHHhHHHHHHHHHhhc-----CCCCEEEEEeCCCC
Q 029875 25 GKIRFYCWDTAGQEKFGGLRDGYYIH----GQCAIIMFDVT-ARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDV 94 (186)
Q Consensus 25 ~~~~l~l~Dt~G~~~~~~~~~~~~~~----ad~vilv~D~~-~~~s~~~i~~~~~~~~~~~-----~~~p~ilv~nK~Dl 94 (186)
..+.+.+|||||++.+...+..++.. +|++|+|||++ +..++..+..|+..+.... .+.|+++|+||+|+
T Consensus 89 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl 168 (193)
T 2ged_A 89 DGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSEL 168 (193)
T ss_dssp CCTTCSEEEETTCCBSSCCHHHHHHHHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTS
T ss_pred cCCeEEEEECCCCchHHHHHHHHHHhhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHh
Confidence 45678999999999999888888876 89999999999 8999999888888876542 47999999999999
Q ss_pred CCcc
Q 029875 95 KNRQ 98 (186)
Q Consensus 95 ~~~~ 98 (186)
.+..
T Consensus 169 ~~~~ 172 (193)
T 2ged_A 169 FTAR 172 (193)
T ss_dssp TTCC
T ss_pred cCCC
Confidence 7543
No 171
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.41 E-value=9.3e-13 Score=106.53 Aligned_cols=122 Identities=16% Similarity=0.043 Sum_probs=85.6
Q ss_pred EEEEEEEECCeEEEEEEEeCCCccc---------cCCccccccccCcEEEEEEeCCChh--hHHhHHHHHHHHHhhc-CC
Q 029875 15 VHPLDFFTNCGKIRFYCWDTAGQEK---------FGGLRDGYYIHGQCAIIMFDVTARL--TYKNVPTWHRDLCRVC-EN 82 (186)
Q Consensus 15 ~~~~~~~~~~~~~~l~l~Dt~G~~~---------~~~~~~~~~~~ad~vilv~D~~~~~--s~~~i~~~~~~~~~~~-~~ 82 (186)
.....+.+++ ..+.+|||+|... |...+ ..+..||++++|+|++++. .++.+..|.+.+.... .+
T Consensus 216 ~~~~~i~~~g--~~v~l~DT~G~i~~lp~~lve~f~~tl-~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~ 292 (364)
T 2qtf_A 216 PKRYAIPINN--RKIMLVDTVGFIRGIPPQIVDAFFVTL-SEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSG 292 (364)
T ss_dssp SCEEEEEETT--EEEEEEECCCBCSSCCGGGHHHHHHHH-HGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCS
T ss_pred CEEEEEEECC--EEEEEEeCCCchhcCCHHHHHHHHHHH-HHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCC
Confidence 4445666677 4578999999632 22222 2478899999999999876 5566666666655543 57
Q ss_pred CCEEEEEeCCCCCCcccCh---HHHHHHHHc---CCcEEEeccCCCCCchHHHHHHHHHHhCC
Q 029875 83 IPIVLCGNKVDVKNRQVKA---KQVTFHRKK---NLQYYEISAKSNYNFEKPFLYLARKLAGD 139 (186)
Q Consensus 83 ~p~ilv~nK~Dl~~~~~~~---~~~~~~~~~---~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 139 (186)
.|+++|+||+|+.+..... ....++... +.+++++||++|.|++++++.+.+.+...
T Consensus 293 ~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~~~~SA~~g~gi~~L~~~I~~~l~~~ 355 (364)
T 2qtf_A 293 KPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVIPISALKRTNLELLRDKIYQLATQL 355 (364)
T ss_dssp CCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcEEEEECCCCcCHHHHHHHHHHHhccc
Confidence 8999999999997533111 111233444 24689999999999999999999877653
No 172
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=99.41 E-value=1.8e-13 Score=101.76 Aligned_cols=105 Identities=6% Similarity=-0.083 Sum_probs=68.4
Q ss_pred CCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHh----h--cCCCCEEEEEeCC-CCCCcccChHHHHH
Q 029875 34 TAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR----V--CENIPIVLCGNKV-DVKNRQVKAKQVTF 106 (186)
Q Consensus 34 t~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~----~--~~~~p~ilv~nK~-Dl~~~~~~~~~~~~ 106 (186)
.+||..++.+|+.||.++|++|||+|++|..-++ .+.-+..+.. . ..+.|++|++||. |+++.....+..+.
T Consensus 109 ~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~Ams~~EI~e~ 187 (227)
T 3l82_B 109 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHE 187 (227)
T ss_dssp --------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCBCCHHHHHHH
T ss_pred cCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCCCCHHHHHHH
Confidence 4689999999999999999999999999875433 3333322222 1 1478999999995 78764433332211
Q ss_pred H---H-HcCCcEEEeccCCCCCchHHHHHHHHHHhCC
Q 029875 107 H---R-KKNLQYYEISAKSNYNFEKPFLYLARKLAGD 139 (186)
Q Consensus 107 ~---~-~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 139 (186)
. . ...+.++.|||++|.|+.+.++||+..+..+
T Consensus 188 L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~~k 224 (227)
T 3l82_B 188 LHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVESK 224 (227)
T ss_dssp TTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTTTTC
T ss_pred cCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHHHhh
Confidence 1 1 1235689999999999999999999777543
No 173
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.40 E-value=6.2e-13 Score=115.64 Aligned_cols=84 Identities=20% Similarity=0.217 Sum_probs=62.0
Q ss_pred cccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCE
Q 029875 6 WGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 85 (186)
Q Consensus 6 ~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ 85 (186)
++.+|++........ ..+.+.||||||+..|...+..+++.+|++|+|+|+++..+++....|.. +.. .+.|+
T Consensus 60 ~~giTi~~~~~~~~~----~~~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~-~~~--~~~p~ 132 (691)
T 1dar_A 60 ERGITITAAVTTCFW----KDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQ-AEK--YKVPR 132 (691)
T ss_dssp -------CCEEEEEE----TTEEEEEECCCSSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHH-HHH--TTCCE
T ss_pred hcccccccceEEEEE----CCeEEEEEECcCccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHH-HHH--cCCCE
Confidence 456777665543332 35789999999999999999999999999999999999888777666654 333 37999
Q ss_pred EEEEeCCCCCC
Q 029875 86 VLCGNKVDVKN 96 (186)
Q Consensus 86 ilv~nK~Dl~~ 96 (186)
++++||+|+..
T Consensus 133 ivviNKiD~~~ 143 (691)
T 1dar_A 133 IAFANKMDKTG 143 (691)
T ss_dssp EEEEECTTSTT
T ss_pred EEEEECCCccc
Confidence 99999999864
No 174
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.36 E-value=2.3e-13 Score=113.17 Aligned_cols=124 Identities=17% Similarity=0.131 Sum_probs=79.9
Q ss_pred ccceEEEEEEEEEECCeEEEEEEEeCCC--------ccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc
Q 029875 9 ATIGVEVHPLDFFTNCGKIRFYCWDTAG--------QEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC 80 (186)
Q Consensus 9 ~Tig~~~~~~~~~~~~~~~~l~l~Dt~G--------~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~ 80 (186)
++.|+........+......+++||||| ++.+...+..++++||++|+|+|.++..+. ...|+..+.+.
T Consensus 53 ~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~--~d~~l~~~l~~- 129 (456)
T 4dcu_A 53 DTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTA--ADEEVAKILYR- 129 (456)
T ss_dssp --------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHHHHHCSEEEEEEESSSCSCH--HHHHHHHHHTT-
T ss_pred CCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhhHhhCCEEEEEEeCCCCCCh--HHHHHHHHHHH-
Confidence 4556666655566665667899999999 667777888899999999999999874432 23344433332
Q ss_pred CCCCEEEEEeCCCCCCcccChHHHHHHHHcCC-cEEEeccCCCCCchHHHHHHHHHHhC
Q 029875 81 ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL-QYYEISAKSNYNFEKPFLYLARKLAG 138 (186)
Q Consensus 81 ~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~i~~ 138 (186)
.+.|+++|+||+|+.+... ...++. ..+. ..+.+||++|.|+.+++..+.+.+..
T Consensus 130 ~~~pvilV~NK~D~~~~~~--~~~e~~-~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~~ 185 (456)
T 4dcu_A 130 TKKPVVLAVNKLDNTEMRA--NIYDFY-SLGFGEPYPISGTHGLGLGDLLDAVAEHFKN 185 (456)
T ss_dssp CCSCEEEEEECC-----------CCSG-GGSSSSEEECCTTTCTTHHHHHHHHHTTGGG
T ss_pred cCCCEEEEEECccchhhhh--hHHHHH-HcCCCceEEeecccccchHHHHHHHHhhccc
Confidence 4799999999999864321 111111 1232 57899999999999999999987754
No 175
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.36 E-value=8e-13 Score=114.52 Aligned_cols=74 Identities=16% Similarity=0.102 Sum_probs=57.9
Q ss_pred EEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCC
Q 029875 19 DFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK 95 (186)
Q Consensus 19 ~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~ 95 (186)
...+....+.++||||||+.+|...+..+++.+|++++|+|+++...... ..++..+.. .+.|+++++||+|+.
T Consensus 66 ~~~~~~~~~~~nliDTpG~~~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt-~~~~~~~~~--~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 66 VAPLLFRGHRVFLLDAPGYGDFVGEIRGALEAADAALVAVSAEAGVQVGT-ERAWTVAER--LGLPRMVVVTKLDKG 139 (665)
T ss_dssp EEEEEETTEEEEEEECCCSGGGHHHHHHHHHHCSEEEEEEETTTCSCHHH-HHHHHHHHH--TTCCEEEEEECGGGC
T ss_pred ceEEeeCCEEEEEEeCCCccchHHHHHHHHhhcCcEEEEEcCCcccchhH-HHHHHHHHH--ccCCEEEEecCCchh
Confidence 33333456889999999999999888999999999999999987654433 344444444 379999999999986
No 176
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.35 E-value=4.7e-12 Score=110.30 Aligned_cols=87 Identities=15% Similarity=0.137 Sum_probs=64.2
Q ss_pred ccccceEEEEEEEEE---ECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCC
Q 029875 7 GKATIGVEVHPLDFF---TNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENI 83 (186)
Q Consensus 7 ~~~Tig~~~~~~~~~---~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~ 83 (186)
...|++..+....+. .++..+.+.||||||+.+|...+..+++.+|++|+|+|+++..+.+....|. .+.. .+.
T Consensus 59 rgiTi~~~~~~~~~~~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~-~~~~--~~i 135 (704)
T 2rdo_7 59 RGITITSAATTAFWSGMAKQYEPHRINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWR-QANK--YKV 135 (704)
T ss_pred cCceeeeceEEEEECCccccCCceeEEEEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHH-HHHH--cCC
Confidence 345665554433321 1334589999999999999988999999999999999999876665544443 2322 379
Q ss_pred CEEEEEeCCCCCC
Q 029875 84 PIVLCGNKVDVKN 96 (186)
Q Consensus 84 p~ilv~nK~Dl~~ 96 (186)
|+++++||+|+..
T Consensus 136 p~ilviNKiD~~~ 148 (704)
T 2rdo_7 136 PRIAFVNKMDRMG 148 (704)
T ss_pred CEEEEEeCCCccc
Confidence 9999999999864
No 177
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.35 E-value=1.8e-12 Score=109.55 Aligned_cols=84 Identities=15% Similarity=0.158 Sum_probs=57.0
Q ss_pred cceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEE
Q 029875 10 TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCG 89 (186)
Q Consensus 10 Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~ 89 (186)
+.|+.+......+....+.+.||||||+..|...+..+++.+|++|+|+|+++...... ..++..+.. .+.|+++++
T Consensus 65 ~rGiTi~~~~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t-~~~~~~~~~--~~ipiivvi 141 (529)
T 2h5e_A 65 QRGISITTSVMQFPYHDCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRT-RKLMEVTRL--RDTPILTFM 141 (529)
T ss_dssp -----CCTTEEEEEETTEEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHH-HHHHHHHTT--TTCCEEEEE
T ss_pred cCCcceeeeEEEEEECCeEEEEEECCCChhHHHHHHHHHHHCCEEEEEEeCCccchHHH-HHHHHHHHH--cCCCEEEEE
Confidence 33444333333333355789999999999999888889999999999999998643221 222222222 379999999
Q ss_pred eCCCCCC
Q 029875 90 NKVDVKN 96 (186)
Q Consensus 90 nK~Dl~~ 96 (186)
||+|+..
T Consensus 142 NK~Dl~~ 148 (529)
T 2h5e_A 142 NKLDRDI 148 (529)
T ss_dssp ECTTSCC
T ss_pred cCcCCcc
Confidence 9999964
No 178
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.33 E-value=2e-13 Score=116.75 Aligned_cols=115 Identities=18% Similarity=0.151 Sum_probs=58.0
Q ss_pred cccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChh---hH--H-hHHHHHHHHHhhcC
Q 029875 8 KATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARL---TY--K-NVPTWHRDLCRVCE 81 (186)
Q Consensus 8 ~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~---s~--~-~i~~~~~~~~~~~~ 81 (186)
.+++.++.....+.. ....+.||||||+++|...+..+++.||++|||+|+++.. ++ . .....+..+.. .
T Consensus 238 ~~GiTid~~~~~~~~--~~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~--l 313 (592)
T 3mca_A 238 ARGVTMDVASTTFES--DKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRA--L 313 (592)
T ss_dssp -----------------------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHH--S
T ss_pred cCCeeEEeeEEEEEe--CCeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHH--c
Confidence 344444444444433 4568899999999999998899999999999999998642 12 1 11122222222 2
Q ss_pred CCC-EEEEEeCCCCCCc--ccC----hHHHHHH-HHcCC-----cEEEeccCCCCCch
Q 029875 82 NIP-IVLCGNKVDVKNR--QVK----AKQVTFH-RKKNL-----QYYEISAKSNYNFE 126 (186)
Q Consensus 82 ~~p-~ilv~nK~Dl~~~--~~~----~~~~~~~-~~~~~-----~~~~~Sa~~~~gi~ 126 (186)
+.| +|+|+||+|+.+. ... .+...+. ...++ +++++||++|.||.
T Consensus 314 gip~iIvviNKiDl~~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~ 371 (592)
T 3mca_A 314 GISEIVVSVNKLDLMSWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLI 371 (592)
T ss_dssp SCCCEEEEEECGGGGTTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSC
T ss_pred CCCeEEEEEeccccccccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccc
Confidence 565 9999999999751 111 1122333 33344 69999999999998
No 179
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.32 E-value=2.6e-12 Score=97.83 Aligned_cols=125 Identities=7% Similarity=-0.057 Sum_probs=81.5
Q ss_pred ceEEEEEEEEEECCeEEEEEEEeCCCcc-----------ccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhh
Q 029875 11 IGVEVHPLDFFTNCGKIRFYCWDTAGQE-----------KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV 79 (186)
Q Consensus 11 ig~~~~~~~~~~~~~~~~l~l~Dt~G~~-----------~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~ 79 (186)
+..++....+.+++. .+.||||||.. .+......++++++++|+|+|+++.... ...|+..+...
T Consensus 64 ~t~~~~~~~~~~~~~--~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~--~~~~l~~~~~~ 139 (239)
T 3lxx_A 64 ITKKCEKRSSSWKET--ELVVVDTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPLGRYTEE--EHKATEKILKM 139 (239)
T ss_dssp -CCSCEEEEEEETTE--EEEEEECCSCC-----CHHHHHHHHHHHHHTTTCCSEEEEEEETTCCSSH--HHHHHHHHHHH
T ss_pred eeeeEEEEEEEeCCc--eEEEEECCCccCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEeeCCCCCHH--HHHHHHHHHHH
Confidence 333444445555554 67899999943 3444455566789999999999764432 23444444332
Q ss_pred c---CCCCEEEEEeCCCCCCcc-cC-------hHHHHHHHHcCCcEEEeccCCC-----CCchHHHHHHHHHHhCC
Q 029875 80 C---ENIPIVLCGNKVDVKNRQ-VK-------AKQVTFHRKKNLQYYEISAKSN-----YNFEKPFLYLARKLAGD 139 (186)
Q Consensus 80 ~---~~~p~ilv~nK~Dl~~~~-~~-------~~~~~~~~~~~~~~~~~Sa~~~-----~gi~~l~~~l~~~i~~~ 139 (186)
. ...|+++|+||+|+.... .. .....++..++..++.+++..+ .|+.++|..+.+.+.+.
T Consensus 140 ~~~~~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~~ 215 (239)
T 3lxx_A 140 FGERARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDIFGDRYCALNNKATGAEQEAQRAQLLGLIQRVVREN 215 (239)
T ss_dssp HHHHHGGGEEEEEECGGGC------------CHHHHHHHHHHSSSEEECCTTCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHHcCCEEEEEECCCCccccHHHHHHHHHHHHHHHHHc
Confidence 2 246999999999986432 21 2345677788888888887754 68999999998888654
No 180
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=99.30 E-value=2e-12 Score=100.48 Aligned_cols=105 Identities=6% Similarity=-0.087 Sum_probs=73.4
Q ss_pred CCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHH---HHH-hh--cCCCCEEEEEeC-CCCCCcccChHHHHH
Q 029875 34 TAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHR---DLC-RV--CENIPIVLCGNK-VDVKNRQVKAKQVTF 106 (186)
Q Consensus 34 t~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~---~~~-~~--~~~~p~ilv~nK-~Dl~~~~~~~~~~~~ 106 (186)
.+||...+.+|+.|+.++|++|+|+|++|+..++ .+.-+. .+. +. ..+.|++|++|| .|+++.....+..+.
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams~~EI~e~ 272 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHE 272 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCCHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCCHHHHHHH
Confidence 4789999999999999999999999999987543 222222 222 21 258999999997 588765433332211
Q ss_pred H---H-HcCCcEEEeccCCCCCchHHHHHHHHHHhCC
Q 029875 107 H---R-KKNLQYYEISAKSNYNFEKPFLYLARKLAGD 139 (186)
Q Consensus 107 ~---~-~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 139 (186)
. . .....++.|||++|+|+.+.++||++.+..+
T Consensus 273 L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~~k 309 (312)
T 3l2o_B 273 LHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVESK 309 (312)
T ss_dssp TTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSCC-
T ss_pred cCCccCCCcEEEEecccCCCcCHHHHHHHHHHHHHhh
Confidence 1 1 1234689999999999999999999888543
No 181
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.28 E-value=1.4e-11 Score=107.13 Aligned_cols=68 Identities=18% Similarity=0.208 Sum_probs=57.5
Q ss_pred EEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCC
Q 029875 26 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN 96 (186)
Q Consensus 26 ~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 96 (186)
.+.+.||||||+..|...+..+++.+|++|+|+|+++..+++....|.. +.. .+.|+++|+||+|+..
T Consensus 74 ~~~i~liDTPG~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~-~~~--~~~p~ilviNK~Dl~~ 141 (693)
T 2xex_A 74 GHRVNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQ-ATT--YGVPRIVFVNKMDKLG 141 (693)
T ss_dssp TEEEEEECCCCCSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHH-HHH--TTCCEEEEEECTTSTT
T ss_pred CeeEEEEECcCCcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHH-HHH--cCCCEEEEEECCCccc
Confidence 4788999999999999889999999999999999999877776655543 333 3789999999999864
No 182
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.27 E-value=7.6e-12 Score=95.96 Aligned_cols=112 Identities=8% Similarity=-0.008 Sum_probs=75.4
Q ss_pred EEEEEEEeCCCcc--------ccCCcccccc----ccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc----CCCCEEEEE
Q 029875 26 KIRFYCWDTAGQE--------KFGGLRDGYY----IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC----ENIPIVLCG 89 (186)
Q Consensus 26 ~~~l~l~Dt~G~~--------~~~~~~~~~~----~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~----~~~p~ilv~ 89 (186)
...+.||||||.. .+......++ +++|++|+|+|+++....+ ..+++.+.... .+.|++|++
T Consensus 69 ~~~i~liDTPG~~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~~~~--~~~~~~l~~~~~~~~~~~~iilv~ 146 (247)
T 3lxw_A 69 KCHVEVVDTPDIFSSQVSKTDPGCEERGHCYLLSAPGPHALLLVTQLGRFTAQD--QQAVRQVRDMFGEDVLKWMVIVFT 146 (247)
T ss_dssp TEEEEEEECCSCSSTTHHHHSTTSHHHHHHHHHHTTCCSEEEEEEETTBCCHHH--HHHHHHHHHHHCGGGGGGEEEEEE
T ss_pred CcEEEEEECCCCCCCCCCcHHHHHHHHHHHHHhcCCCCCEEEEEEeCCCCCHHH--HHHHHHHHHHhChhhhccEEEEEE
Confidence 4568899999973 3332222333 8999999999998532211 22333333322 368999999
Q ss_pred eCCCCCCcccC--------hHHHHHHHHcCCcEEEeccCC-----CCCchHHHHHHHHHHhCC
Q 029875 90 NKVDVKNRQVK--------AKQVTFHRKKNLQYYEISAKS-----NYNFEKPFLYLARKLAGD 139 (186)
Q Consensus 90 nK~Dl~~~~~~--------~~~~~~~~~~~~~~~~~Sa~~-----~~gi~~l~~~l~~~i~~~ 139 (186)
||+|+.+.... .....+...++..++.++++. +.|+.+|+..+.+.+.+.
T Consensus 147 nK~Dl~~~~~~~~l~~~~~~~l~~l~~~~g~~~~~~~~~~~~~~~~~~v~~Ll~~i~~~~~~~ 209 (247)
T 3lxw_A 147 RKEDLAGGSLHDYVSNTENRALRELVAECGGRVCAFDNRATGREQEAQVEQLLGMVEGLVLEH 209 (247)
T ss_dssp CGGGGTTCCHHHHHHHCCCHHHHHHHHHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred chHhcCCCCHHHHHhhcccHHHHHHHHHcCCeEEEEeCCCCccccHHHHHHHHHHHHHHHHHc
Confidence 99999753221 223466677787888777665 579999999999988764
No 183
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.26 E-value=3.1e-12 Score=100.18 Aligned_cols=105 Identities=11% Similarity=0.103 Sum_probs=73.6
Q ss_pred EEEEEEeCCCcc-------------ccCCccccccccCcEEE-EEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCC
Q 029875 27 IRFYCWDTAGQE-------------KFGGLRDGYYIHGQCAI-IMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKV 92 (186)
Q Consensus 27 ~~l~l~Dt~G~~-------------~~~~~~~~~~~~ad~vi-lv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~ 92 (186)
..+.||||||.. .+..++..+++.++.+| +|+|+++..+......|+..+.. .+.|+++|+||+
T Consensus 125 ~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~~~~~~~--~~~~~i~V~NK~ 202 (299)
T 2aka_B 125 LNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDP--QGQRTIGVITKL 202 (299)
T ss_dssp CSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHHCT--TCSSEEEEEECG
T ss_pred CCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHHHHHhCC--CCCeEEEEEEcc
Confidence 689999999974 23445667888888777 69999886554443345555443 378999999999
Q ss_pred CCCCcccChHHHHHHHH------cC-CcEEEeccCCCCCchHHHHHHHHH
Q 029875 93 DVKNRQVKAKQVTFHRK------KN-LQYYEISAKSNYNFEKPFLYLARK 135 (186)
Q Consensus 93 Dl~~~~~~~~~~~~~~~------~~-~~~~~~Sa~~~~gi~~l~~~l~~~ 135 (186)
|+.+..... ...... .+ .+++++||++|.|+++++..+.+.
T Consensus 203 Dl~~~~~~~--~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~ 250 (299)
T 2aka_B 203 DLMDEGTDA--RDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 250 (299)
T ss_dssp GGSCTTCCC--HHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHH
T ss_pred ccCCCCchH--HHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHH
Confidence 997532211 111111 12 367899999999999999999874
No 184
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.20 E-value=1.1e-10 Score=95.88 Aligned_cols=114 Identities=17% Similarity=0.146 Sum_probs=85.2
Q ss_pred EEEEEEeCCCccc----cCCcccccc---ccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc---CCCCEEEEEeCCCCCC
Q 029875 27 IRFYCWDTAGQEK----FGGLRDGYY---IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVKN 96 (186)
Q Consensus 27 ~~l~l~Dt~G~~~----~~~~~~~~~---~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~---~~~p~ilv~nK~Dl~~ 96 (186)
..+.+||++|... +..+...++ ..++.+++|+|++ ...+.++..|.+++..+. ...|.++++||+|+..
T Consensus 205 ~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~ 283 (416)
T 1udx_A 205 ERFTLADIPGIIEGASEGKGLGLEFLRHIARTRVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLE 283 (416)
T ss_dssp CEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSSEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSC
T ss_pred ceEEEEeccccccchhhhhhhhHHHHHHHHHHHhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhh
Confidence 5678999999743 233333333 4699999999998 557777777877776653 3689999999999976
Q ss_pred cccChHHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCCCC
Q 029875 97 RQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPN 141 (186)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~ 141 (186)
........+.+...+.+++.+||+++.|+++++.++.+.+.+...
T Consensus 284 ~~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~~i~~~l~~~~~ 328 (416)
T 1udx_A 284 EEAVKALADALAREGLAVLPVSALTGAGLPALKEALHALVRSTPP 328 (416)
T ss_dssp HHHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHHhcCCeEEEEECCCccCHHHHHHHHHHHHHhccc
Confidence 522222334445557899999999999999999999999987654
No 185
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.19 E-value=9.6e-12 Score=98.15 Aligned_cols=129 Identities=16% Similarity=0.210 Sum_probs=69.0
Q ss_pred ccceEEEEEEEEEECCeEEEEEEEeCCCc-------cccCCccc-------ccccc-------------CcEEEEEEeCC
Q 029875 9 ATIGVEVHPLDFFTNCGKIRFYCWDTAGQ-------EKFGGLRD-------GYYIH-------------GQCAIIMFDVT 61 (186)
Q Consensus 9 ~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~-------~~~~~~~~-------~~~~~-------------ad~vilv~D~~ 61 (186)
+|++.......+..++....+++|||+|+ +.+..+.. .+++. |++++++.+++
T Consensus 58 ~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt 137 (301)
T 2qnr_A 58 RTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPF 137 (301)
T ss_dssp -------CEEEEC---CCEEEEEEEEC-----------CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSS
T ss_pred CcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCc
Confidence 45554444444444566789999999998 55555544 44443 34466666554
Q ss_pred ChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCc-cc---ChHHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHh
Q 029875 62 ARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR-QV---KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLA 137 (186)
Q Consensus 62 ~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~-~~---~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 137 (186)
.. +++.+. .+.+.+.....|+++|+||+|+... .. ..+..+++..++++++++||++| |++++|..+++.+.
T Consensus 138 ~~-~Ld~~~--~~~l~~l~~~~~iilV~~K~Dl~~~~e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~ 213 (301)
T 2qnr_A 138 GH-GLKPLD--VAFMKAIHNKVNIVPVIAKADTLTLKERERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLK 213 (301)
T ss_dssp SS-SCCHHH--HHHHHHHTTTSCEEEEECCGGGSCHHHHHHHHHHHHHHHHHTTCCCCCCC----------CHHHHHHHH
T ss_pred cc-CCCHHH--HHHHHHHHhcCCEEEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHhh
Confidence 31 333332 1333333456899999999999753 21 12345778888999999999999 99999999999997
Q ss_pred CCCC
Q 029875 138 GDPN 141 (186)
Q Consensus 138 ~~~~ 141 (186)
....
T Consensus 214 ~~~p 217 (301)
T 2qnr_A 214 ASIP 217 (301)
T ss_dssp TTCS
T ss_pred cCCC
Confidence 6543
No 186
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.17 E-value=5.5e-11 Score=88.16 Aligned_cols=125 Identities=15% Similarity=0.025 Sum_probs=76.3
Q ss_pred ccccceEEEEEEEEEECCeEEEEEEEeCCCccc----------cCCcccccc---ccCcEEEEEEeCCChhhHHh--HHH
Q 029875 7 GKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEK----------FGGLRDGYY---IHGQCAIIMFDVTARLTYKN--VPT 71 (186)
Q Consensus 7 ~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~----------~~~~~~~~~---~~ad~vilv~D~~~~~s~~~--i~~ 71 (186)
+.||.|..+....+.+++ .+.+|||||... +......++ ..++++++++|+++..++.. +..
T Consensus 55 ~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~ 131 (210)
T 1pui_A 55 TSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIE 131 (210)
T ss_dssp --------CCEEEEEEET---TEEEEECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHH
T ss_pred ccCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHH
Confidence 467778766544444443 567999999743 222222344 46899999999998665432 333
Q ss_pred HHHHHHhhcCCCCEEEEEeCCCCCCccc----ChHHHHHHHHcC--CcEEEeccCCCCCchHHHHHHHHHHhCC
Q 029875 72 WHRDLCRVCENIPIVLCGNKVDVKNRQV----KAKQVTFHRKKN--LQYYEISAKSNYNFEKPFLYLARKLAGD 139 (186)
Q Consensus 72 ~~~~~~~~~~~~p~ilv~nK~Dl~~~~~----~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 139 (186)
|+. . .+.|+++++||+|+..... ......++...+ +.++++||+++.|++++++.+.+.+.+.
T Consensus 132 ~~~---~--~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~~ 200 (210)
T 1pui_A 132 WAV---D--SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSEM 200 (210)
T ss_dssp HHH---H--TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC--
T ss_pred HHH---H--cCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHhhc
Confidence 332 1 3689999999999864321 122334444443 4688999999999999999999877543
No 187
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.12 E-value=5.8e-11 Score=103.37 Aligned_cols=109 Identities=13% Similarity=0.117 Sum_probs=79.0
Q ss_pred EEEEEeCCCccc---cCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCcc-cCh--
Q 029875 28 RFYCWDTAGQEK---FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ-VKA-- 101 (186)
Q Consensus 28 ~l~l~Dt~G~~~---~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~-- 101 (186)
.+.||||||... ....+..+++.||++|+|+|+++..+..+...|.+.+.. .+.|+++|+||+|+.... ...
T Consensus 175 ~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~~--~~~~iiiVlNK~Dl~~~~~~~~ee 252 (695)
T 2j69_A 175 GIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIKG--RGLTVFFLVNAWDQVRESLIDPDD 252 (695)
T ss_dssp TEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTTT--SCCCEEEEEECGGGGGGGCSSTTC
T ss_pred CeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHHh--hCCCEEEEEECcccccccccChhh
Confidence 589999999765 334566788999999999999988787776666555433 267899999999986432 111
Q ss_pred ---------HHHH-----HHHH--------cCCcEEEeccC--------------CCCCchHHHHHHHHHHhC
Q 029875 102 ---------KQVT-----FHRK--------KNLQYYEISAK--------------SNYNFEKPFLYLARKLAG 138 (186)
Q Consensus 102 ---------~~~~-----~~~~--------~~~~~~~~Sa~--------------~~~gi~~l~~~l~~~i~~ 138 (186)
.... +... ...+++++||+ +|.|+.+++..+.+.+..
T Consensus 253 ~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~~~~~~~Gi~~L~~~L~~~l~~ 325 (695)
T 2j69_A 253 VEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQADLDGTGFPKFMDSLNTFLTR 325 (695)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTTCCCTTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCchhhhhccCHHHHHHHHHHHHHH
Confidence 0111 1111 12369999999 999999999999987754
No 188
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.12 E-value=7.1e-11 Score=95.65 Aligned_cols=96 Identities=19% Similarity=0.207 Sum_probs=75.9
Q ss_pred CccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCcccChH-HHH----HHHHc
Q 029875 36 GQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK-QVT----FHRKK 110 (186)
Q Consensus 36 G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~-~~~----~~~~~ 110 (186)
..++|..+.+.+++.++++++|+|++++. ..|...+.+...+.|+++|+||+|+.+.....+ ..+ +++..
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~~~~p~ilV~NK~DL~~~~~~~~~~~~~l~~~~~~~ 129 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFVGNNKVLLVGNKADLIPKSVKHDKVKHWMRYSAKQL 129 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHSSSSCEEEEEECGGGSCTTSCHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHhCCCcEEEEEEChhcCCcccCHHHHHHHHHHHHHHc
Confidence 46788889999999999999999999863 467677777667899999999999976443222 223 35566
Q ss_pred CC---cEEEeccCCCCCchHHHHHHHHHH
Q 029875 111 NL---QYYEISAKSNYNFEKPFLYLARKL 136 (186)
Q Consensus 111 ~~---~~~~~Sa~~~~gi~~l~~~l~~~i 136 (186)
++ +++.+||++|.|++++++.+.+..
T Consensus 130 g~~~~~v~~iSA~~g~gi~~L~~~l~~~~ 158 (368)
T 3h2y_A 130 GLKPEDVFLISAAKGQGIAELADAIEYYR 158 (368)
T ss_dssp TCCCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CCCcccEEEEeCCCCcCHHHHHhhhhhhc
Confidence 76 799999999999999999997755
No 189
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.11 E-value=1e-10 Score=99.19 Aligned_cols=69 Identities=14% Similarity=0.120 Sum_probs=55.9
Q ss_pred eEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCC
Q 029875 25 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN 96 (186)
Q Consensus 25 ~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 96 (186)
+.+.+.|+||||+..|..-....++-+|++|+|+|+...-.-+...-|... .+ .++|.++++||+|...
T Consensus 98 ~~~~iNlIDTPGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a-~~--~~lp~i~fINK~Dr~~ 166 (548)
T 3vqt_A 98 RDRVVNLLDTPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVC-RM--RATPVMTFVNKMDREA 166 (548)
T ss_dssp TTEEEEEECCCCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHH-HH--TTCCEEEEEECTTSCC
T ss_pred CCEEEEEEeCCCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHHH-HH--hCCceEEEEecccchh
Confidence 346777889999999999999999999999999999987655554555433 33 2799999999999864
No 190
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.06 E-value=4.5e-11 Score=96.30 Aligned_cols=103 Identities=8% Similarity=-0.024 Sum_probs=71.1
Q ss_pred EEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCcccChHH-H
Q 029875 26 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQ-V 104 (186)
Q Consensus 26 ~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~-~ 104 (186)
.+.+.||||||... .....+..+|++|+|+|++..+.++.+..+ ....|+++|+||+|+.+....... .
T Consensus 171 ~~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~~~-------~~~~p~ivVlNK~Dl~~~~~~~~~~~ 240 (355)
T 3p32_A 171 GFDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIKKG-------VLELADIVVVNKADGEHHKEARLAAR 240 (355)
T ss_dssp TCCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCCTT-------SGGGCSEEEEECCCGGGHHHHHHHHH
T ss_pred CCCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHHHh-------HhhcCCEEEEECCCCcChhHHHHHHH
Confidence 46788999999432 233345889999999999876554333211 124699999999998643211111 1
Q ss_pred HHHHH----------cCCcEEEeccCCCCCchHHHHHHHHHHhC
Q 029875 105 TFHRK----------KNLQYYEISAKSNYNFEKPFLYLARKLAG 138 (186)
Q Consensus 105 ~~~~~----------~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 138 (186)
.+... ++.+++.+||++|.|++++++++.+.+..
T Consensus 241 ~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~ 284 (355)
T 3p32_A 241 ELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV 284 (355)
T ss_dssp HHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred HHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 22221 14689999999999999999999998865
No 191
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.05 E-value=1.9e-10 Score=88.31 Aligned_cols=110 Identities=14% Similarity=0.029 Sum_probs=69.8
Q ss_pred EEEEEEeCCCccccCCccc------cccccCcEEEEEEeCCChhhHHhHH---HHHHHHHhhcCCCCEEEEEeCCCCCCc
Q 029875 27 IRFYCWDTAGQEKFGGLRD------GYYIHGQCAIIMFDVTARLTYKNVP---TWHRDLCRVCENIPIVLCGNKVDVKNR 97 (186)
Q Consensus 27 ~~l~l~Dt~G~~~~~~~~~------~~~~~ad~vilv~D~~~~~s~~~i~---~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 97 (186)
+.+.||||||+..+..... ..+.. +++|+++|++...+..... .+..... ...+.|+++|+||+|+...
T Consensus 109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~-~~~~~p~~iv~NK~D~~~~ 186 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLID-LRLGATTIPALNKVDLLSE 186 (262)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHH-HHHTSCEEEEECCGGGCCH
T ss_pred CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHh-cccCCCeEEEEeccccccc
Confidence 5788999999876543322 23466 8999999886433322221 1111111 1136899999999998753
Q ss_pred ccChHHHH----------------------------HHHHcC--CcEEEeccCCCCCchHHHHHHHHHHhC
Q 029875 98 QVKAKQVT----------------------------FHRKKN--LQYYEISAKSNYNFEKPFLYLARKLAG 138 (186)
Q Consensus 98 ~~~~~~~~----------------------------~~~~~~--~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 138 (186)
....+..+ ++..++ .+++++||++|.|+++++.++.+.+..
T Consensus 187 ~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~~ 257 (262)
T 1yrb_A 187 EEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYCT 257 (262)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhcc
Confidence 21111111 123333 479999999999999999999988754
No 192
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.04 E-value=5.5e-11 Score=97.16 Aligned_cols=59 Identities=20% Similarity=0.256 Sum_probs=36.8
Q ss_pred CCCEEEEEeCCCCCCcccChHHHHHHHHcCCcEEEeccCCCCCchHHHH-HHHHHHhCCC
Q 029875 82 NIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFL-YLARKLAGDP 140 (186)
Q Consensus 82 ~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~-~l~~~i~~~~ 140 (186)
.+|+++|+||+|+..........+.....+.+++.+||+.+.|+.++++ .+++.+...+
T Consensus 214 ~kP~i~v~NK~D~~~~~~l~~l~~~~~~~~~~vv~iSA~~e~~l~~L~~~~l~~~~p~~~ 273 (397)
T 1wxq_A 214 NKPMVIAANKADAASDEQIKRLVREEEKRGYIVIPTSAAAELTLRKAAKAGFIEYIPGAS 273 (397)
T ss_dssp HSCEEEEEECGGGSCHHHHHHHHHHHHHTTCEEEEECHHHHHHHHSCSSSCCCCSCC---
T ss_pred CCCEEEEEeCccccchHHHHHHHHHHhhcCCcEEEEeccchhhHHHHHhhhhhhhcCCCc
Confidence 4899999999998621100111122222367899999999999988766 5555444443
No 193
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.03 E-value=2.6e-10 Score=101.11 Aligned_cols=85 Identities=20% Similarity=0.143 Sum_probs=69.1
Q ss_pred cccceEEEEEEEEE------------ECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHH
Q 029875 8 KATIGVEVHPLDFF------------TNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRD 75 (186)
Q Consensus 8 ~~Tig~~~~~~~~~------------~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~ 75 (186)
..||+.......+. +++..+.+.||||||+.+|...+..+++.+|++|+|+|+++..+++....|...
T Consensus 67 giTI~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~ 146 (842)
T 1n0u_A 67 GITIKSTAISLYSEMSDEDVKEIKQKTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQA 146 (842)
T ss_dssp CCCBCCCEEEEEEECCHHHHHHCSSCCCSSEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHH
T ss_pred ceeEeeceeEEEecccccccccccccccCCCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHH
Confidence 34776666555554 355689999999999999999999999999999999999998888876666543
Q ss_pred HHhhcCCCCEEEEEeCCCCC
Q 029875 76 LCRVCENIPIVLCGNKVDVK 95 (186)
Q Consensus 76 ~~~~~~~~p~ilv~nK~Dl~ 95 (186)
.. .+.|+++++||+|+.
T Consensus 147 ~~---~~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 147 LG---ERIKPVVVINKVDRA 163 (842)
T ss_dssp HH---TTCEEEEEEECHHHH
T ss_pred HH---cCCCeEEEEECCCcc
Confidence 32 378999999999986
No 194
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.02 E-value=7.9e-11 Score=94.96 Aligned_cols=106 Identities=12% Similarity=0.090 Sum_probs=73.4
Q ss_pred EEEEEEEeCCCcccc-------------CCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc-CCCCEEEEEeC
Q 029875 26 KIRFYCWDTAGQEKF-------------GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNK 91 (186)
Q Consensus 26 ~~~l~l~Dt~G~~~~-------------~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-~~~p~ilv~nK 91 (186)
...+.||||||..++ ..+...|+++++++|+|+|.++..... ..|+..+.... .+.|+++|+||
T Consensus 135 ~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~--~~~~~l~~~~~~~~~~~i~V~nK 212 (360)
T 3t34_A 135 VVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT--SDAIKISREVDPSGDRTFGVLTK 212 (360)
T ss_dssp SCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG--CHHHHHHHHSCTTCTTEEEEEEC
T ss_pred CCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC--HHHHHHHHHhcccCCCEEEEEeC
Confidence 346899999998876 445678899999999999986544322 24444444443 36899999999
Q ss_pred CCCCCccc-ChHHH-HHHHHcCCcEEEeccCCCCCchHHHHHHH
Q 029875 92 VDVKNRQV-KAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLA 133 (186)
Q Consensus 92 ~Dl~~~~~-~~~~~-~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 133 (186)
+|+.+... ..+.. .+...++.+|+.++++++.|+++.+..+.
T Consensus 213 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~~i~~~~~~~~ 256 (360)
T 3t34_A 213 IDLMDKGTDAVEILEGRSFKLKYPWVGVVNRSQADINKNVDMIA 256 (360)
T ss_dssp GGGCCTTCCSHHHHTTSSSCCSSCCEEECCCCHHHHHTTCCHHH
T ss_pred CccCCCcccHHHHHcCccccccCCeEEEEECChHHhccCCCHHH
Confidence 99975322 22211 22334467899999999998887665543
No 195
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.01 E-value=3e-10 Score=93.27 Aligned_cols=127 Identities=13% Similarity=0.136 Sum_probs=60.5
Q ss_pred cccceEEEEEEEEEECCeEEEEEEEeCCCccccCC-------------------------ccccccccCcEEEEEEeCCC
Q 029875 8 KATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG-------------------------LRDGYYIHGQCAIIMFDVTA 62 (186)
Q Consensus 8 ~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~-------------------------~~~~~~~~ad~vilv~D~~~ 62 (186)
.+|++.+.....+...+....+++|||+|...+.. +.+.++.++++.+++|+...
T Consensus 69 ~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldeP 148 (418)
T 2qag_C 69 KKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAP 148 (418)
T ss_dssp --CCEEEEEECC------CEEEEEEECC-----------CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC
T ss_pred ccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecC
Confidence 56777665554444455567899999999865421 23455666665444444433
Q ss_pred h-hhHHhHH-HHHHHHHhhcCCCCEEEEEeCCCCCCc-ccC---hHHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHH
Q 029875 63 R-LTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNR-QVK---AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 136 (186)
Q Consensus 63 ~-~s~~~i~-~~~~~~~~~~~~~p~ilv~nK~Dl~~~-~~~---~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 136 (186)
. .++..+. .|+..+. .+.|+|+|+||+|+... .+. .....++..++++++++|++++.++.++|..+...+
T Consensus 149 t~~~L~~~d~~~lk~L~---~~v~iIlVinK~Dll~~~ev~~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~~i 225 (418)
T 2qag_C 149 SGHGLKPLDIEFMKRLH---EKVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRL 225 (418)
T ss_dssp -CCSCCHHHHHHHHHHT---TTSEEEEEEESTTSSCHHHHHHHHHHHHHHHHHHTCCCCCCC-----------------C
T ss_pred cccCCCHHHHHHHHHHh---ccCcEEEEEEcccCccHHHHHHHHHHHHHHHHHcCCeEEeCCCCCCcCHHHHHHHHHhhC
Confidence 2 2444443 5666654 37899999999998742 222 234466778899999999999999999988888765
Q ss_pred h
Q 029875 137 A 137 (186)
Q Consensus 137 ~ 137 (186)
.
T Consensus 226 P 226 (418)
T 2qag_C 226 P 226 (418)
T ss_dssp C
T ss_pred C
Confidence 3
No 196
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.00 E-value=2.6e-10 Score=92.40 Aligned_cols=97 Identities=20% Similarity=0.211 Sum_probs=74.4
Q ss_pred CCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCcccChH-HHHH----HHH
Q 029875 35 AGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK-QVTF----HRK 109 (186)
Q Consensus 35 ~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~-~~~~----~~~ 109 (186)
..++.|..+...++..++++++|+|++++.+ .|...+.+...+.|+++|+||+|+.+.....+ ..++ ++.
T Consensus 56 ~~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~l~~~piilV~NK~DLl~~~~~~~~~~~~l~~~~~~ 130 (369)
T 3ec1_A 56 LDDDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRFAADNPILLVGNKADLLPRSVKYPKLLRWMRRMAEE 130 (369)
T ss_dssp ---CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHHCTTSCEEEEEECGGGSCTTCCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHHhCCCCEEEEEEChhcCCCccCHHHHHHHHHHHHHH
Confidence 3588899999999999999999999999764 45555555556899999999999976543322 2233 455
Q ss_pred cCC---cEEEeccCCCCCchHHHHHHHHHH
Q 029875 110 KNL---QYYEISAKSNYNFEKPFLYLARKL 136 (186)
Q Consensus 110 ~~~---~~~~~Sa~~~~gi~~l~~~l~~~i 136 (186)
.+. +++.+||++|.|++++++.+.+..
T Consensus 131 ~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~ 160 (369)
T 3ec1_A 131 LGLCPVDVCLVSAAKGIGMAKVMEAINRYR 160 (369)
T ss_dssp TTCCCSEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred cCCCcccEEEEECCCCCCHHHHHHHHHhhc
Confidence 565 689999999999999999998765
No 197
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=98.98 E-value=1.4e-09 Score=85.75 Aligned_cols=111 Identities=9% Similarity=0.098 Sum_probs=72.7
Q ss_pred EEEEEEeCCCccc-------------cCCccccccccCcEEEEEEeCCChh-hHHhHHHHHHHHHhhcCCCCEEEEEeCC
Q 029875 27 IRFYCWDTAGQEK-------------FGGLRDGYYIHGQCAIIMFDVTARL-TYKNVPTWHRDLCRVCENIPIVLCGNKV 92 (186)
Q Consensus 27 ~~l~l~Dt~G~~~-------------~~~~~~~~~~~ad~vilv~D~~~~~-s~~~i~~~~~~~~~~~~~~p~ilv~nK~ 92 (186)
..+.||||||... +..++..+++.+|++|+|+|.++.. .......+...+.. .+.|+++|+||+
T Consensus 131 ~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~~--~~~~~i~v~NK~ 208 (315)
T 1jwy_B 131 VNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDP--EGKRTIGVITKL 208 (315)
T ss_dssp CSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCS--SCSSEEEEEECT
T ss_pred CCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhCC--CCCcEEEEEcCc
Confidence 5789999999754 3445667889999999999985432 11121233333322 378999999999
Q ss_pred CCCCcccChHHHHHHHH----cCCcEEEeccC---C---CCCchHHHHHHHHHHhCCCC
Q 029875 93 DVKNRQVKAKQVTFHRK----KNLQYYEISAK---S---NYNFEKPFLYLARKLAGDPN 141 (186)
Q Consensus 93 Dl~~~~~~~~~~~~~~~----~~~~~~~~Sa~---~---~~gi~~l~~~l~~~i~~~~~ 141 (186)
|+.+.... ...++.. .+..++.+++. + +.|+.+++..+...+...+.
T Consensus 209 Dl~~~~~~--~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~~~~~ 265 (315)
T 1jwy_B 209 DLMDKGTD--AMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEILYFKNHPI 265 (315)
T ss_dssp TSSCSSCC--CHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHHHHHHTCTT
T ss_pred ccCCcchH--HHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHHHHHHhCCCc
Confidence 99753321 1222222 12456666654 4 78899999999998877654
No 198
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.91 E-value=1.6e-09 Score=84.66 Aligned_cols=98 Identities=12% Similarity=0.063 Sum_probs=69.6
Q ss_pred eCCCcc-ccCCccccccccCcEEEEEEeCCChhhHHh--HHHHHHHHHhhcCCCCEEEEEeCCCCCCcccChHHHHHHHH
Q 029875 33 DTAGQE-KFGGLRDGYYIHGQCAIIMFDVTARLTYKN--VPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRK 109 (186)
Q Consensus 33 Dt~G~~-~~~~~~~~~~~~ad~vilv~D~~~~~s~~~--i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~ 109 (186)
..||+. +........++.||+++.|+|++++.+... +..|+ .+.|.++|.||+|+.+.........+.+.
T Consensus 5 w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l-------~~kp~ilVlNK~DL~~~~~~~~~~~~~~~ 77 (282)
T 1puj_A 5 WFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL-------KNKPRIMLLNKADKADAAVTQQWKEHFEN 77 (282)
T ss_dssp ----CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC-------SSSCEEEEEECGGGSCHHHHHHHHHHHHT
T ss_pred CCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH-------CCCCEEEEEECcccCCHHHHHHHHHHHHh
Confidence 567764 344455667889999999999999887653 33332 57999999999999763221222334445
Q ss_pred cCCcEEEeccCCCCCchHHHHHHHHHHh
Q 029875 110 KNLQYYEISAKSNYNFEKPFLYLARKLA 137 (186)
Q Consensus 110 ~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 137 (186)
.+++++.+||++|.|+.+++..+.+.+.
T Consensus 78 ~g~~~i~iSA~~~~gi~~L~~~i~~~l~ 105 (282)
T 1puj_A 78 QGIRSLSINSVNGQGLNQIVPASKEILQ 105 (282)
T ss_dssp TTCCEEECCTTTCTTGGGHHHHHHHHHH
T ss_pred cCCcEEEEECCCcccHHHHHHHHHHHHH
Confidence 5789999999999999999998877664
No 199
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=98.89 E-value=1.9e-09 Score=80.53 Aligned_cols=104 Identities=14% Similarity=0.091 Sum_probs=67.4
Q ss_pred EEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCcc-cC-hHH
Q 029875 26 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ-VK-AKQ 103 (186)
Q Consensus 26 ~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~-~~~ 103 (186)
.+.+.+|||+|+-... ..+...++++++|+|+++... ....+... .+.|+++|+||+|+.+.. .. .+.
T Consensus 108 ~~d~iiidt~G~~~~~---~~~~~~~~~~i~vvd~~~~~~--~~~~~~~~-----~~~~~iiv~NK~Dl~~~~~~~~~~~ 177 (221)
T 2wsm_A 108 DCDLLLIENVGNLICP---VDFDLGENYRVVMVSVTEGDD--VVEKHPEI-----FRVADLIVINKVALAEAVGADVEKM 177 (221)
T ss_dssp TCSEEEEEEEEBSSGG---GGCCCSCSEEEEEEEGGGCTT--HHHHCHHH-----HHTCSEEEEECGGGHHHHTCCHHHH
T ss_pred CCCEEEEeCCCCCCCC---chhccccCcEEEEEeCCCcch--hhhhhhhh-----hhcCCEEEEecccCCcchhhHHHHH
Confidence 3567889999851111 011135789999999987532 11111111 147899999999986431 12 233
Q ss_pred HHHHHHc--CCcEEEeccCCCCCchHHHHHHHHHHhCC
Q 029875 104 VTFHRKK--NLQYYEISAKSNYNFEKPFLYLARKLAGD 139 (186)
Q Consensus 104 ~~~~~~~--~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 139 (186)
..++... +.+++++||++|.|++++|.++.+.+...
T Consensus 178 ~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~~ 215 (221)
T 2wsm_A 178 KADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNVH 215 (221)
T ss_dssp HHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC--
T ss_pred HHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHH
Confidence 3444443 46899999999999999999999888554
No 200
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=98.85 E-value=1.8e-09 Score=83.28 Aligned_cols=74 Identities=7% Similarity=-0.060 Sum_probs=54.7
Q ss_pred EEEECCeEEEEEEEeCCCccccCCccccccc---------cCcEEEEEEeCCChhhHHhH-HHHHHHHHhhcC---CCCE
Q 029875 19 DFFTNCGKIRFYCWDTAGQEKFGGLRDGYYI---------HGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCE---NIPI 85 (186)
Q Consensus 19 ~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~---------~ad~vilv~D~~~~~s~~~i-~~~~~~~~~~~~---~~p~ 85 (186)
.+..++ ..+.||||||+..+......+++ +++++++|++++... +... ..|++.+..... ..|+
T Consensus 78 ~~~~~~--~~l~liDTpG~~~~~~~~~~~~~~i~~~l~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ 154 (262)
T 3def_A 78 SRTMGG--FTINIIDTPGLVEAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKT 154 (262)
T ss_dssp EEEETT--EEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGE
T ss_pred EEEECC--eeEEEEECCCCCCcccchHHHHHHHHHHHhcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCE
Confidence 344444 48899999999988776666554 899999999987654 4333 467777776542 2599
Q ss_pred EEEEeCCCCC
Q 029875 86 VLCGNKVDVK 95 (186)
Q Consensus 86 ilv~nK~Dl~ 95 (186)
++|+||+|+.
T Consensus 155 ivv~nK~Dl~ 164 (262)
T 3def_A 155 LLVLTHAQFS 164 (262)
T ss_dssp EEEEECTTCC
T ss_pred EEEEeCcccC
Confidence 9999999995
No 201
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=98.84 E-value=2.6e-09 Score=82.74 Aligned_cols=75 Identities=9% Similarity=-0.007 Sum_probs=53.1
Q ss_pred EECCeEEEEEEEeCCCccccCCcccc---------ccccCcEEEEEEeCCChhhHHhH-HHHHHHHHhhcCC---CCEEE
Q 029875 21 FTNCGKIRFYCWDTAGQEKFGGLRDG---------YYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCEN---IPIVL 87 (186)
Q Consensus 21 ~~~~~~~~l~l~Dt~G~~~~~~~~~~---------~~~~ad~vilv~D~~~~~s~~~i-~~~~~~~~~~~~~---~p~il 87 (186)
.++...+.+.||||||+..+..+... ..+++|++|+|+|++.. ++... ..|+..+...+.. .|+++
T Consensus 81 ~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iiv 159 (270)
T 1h65_A 81 SRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIV 159 (270)
T ss_dssp EEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEE
T ss_pred EEeeCCeEEEEEECCCCCCCccchHHHHHHHHHHhhcCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEE
Confidence 33344568999999999877654332 13479999999998753 34433 4777777665432 69999
Q ss_pred EEeCCCCCC
Q 029875 88 CGNKVDVKN 96 (186)
Q Consensus 88 v~nK~Dl~~ 96 (186)
|+||+|+..
T Consensus 160 V~nK~Dl~~ 168 (270)
T 1h65_A 160 ALTHAQFSP 168 (270)
T ss_dssp EEECCSCCC
T ss_pred EEECcccCC
Confidence 999999964
No 202
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=98.83 E-value=2.2e-10 Score=98.91 Aligned_cols=69 Identities=19% Similarity=0.214 Sum_probs=53.8
Q ss_pred eEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCC
Q 029875 25 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN 96 (186)
Q Consensus 25 ~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 96 (186)
+.+.+.|+||||+..|..-....++-+|++|+|+|+...-.-+...-|.. +.++ ++|.++++||+|...
T Consensus 65 ~~~~iNlIDTPGH~DF~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~-a~~~--~lp~i~~INKmDr~~ 133 (638)
T 3j25_A 65 ENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHA-LRKM--GIPTIFFINKIDQNG 133 (638)
T ss_dssp SSCBCCCEECCCSSSTHHHHHHHHTTCSEEECCEESSCTTCSHHHHHHHH-HHHH--TCSCEECCEECCSSS
T ss_pred CCEEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHH-HHHc--CCCeEEEEecccccc
Confidence 44567888999999999988999999999999999987654443333433 3333 789999999999764
No 203
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=98.80 E-value=1.9e-08 Score=87.78 Aligned_cols=69 Identities=19% Similarity=0.224 Sum_probs=56.5
Q ss_pred eEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCC
Q 029875 25 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN 96 (186)
Q Consensus 25 ~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 96 (186)
..+.+.|+||||+-.|..-....++-+|++|+|+|+...-..+...-|.+...+ ++|.++++||+|...
T Consensus 83 ~~~~iNlIDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~---~lp~i~~iNKiDr~~ 151 (709)
T 4fn5_A 83 DNYRVNVIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKY---GVPRIVYVNKMDRQG 151 (709)
T ss_dssp CCEEEEEECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHH---TCCEEEEEECSSSTT
T ss_pred CCEEEEEEeCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHc---CCCeEEEEccccccC
Confidence 368899999999999999889999999999999999986555544445444443 799999999999753
No 204
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.80 E-value=3.2e-09 Score=85.03 Aligned_cols=102 Identities=12% Similarity=0.005 Sum_probs=65.4
Q ss_pred EEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCcccChHH-H
Q 029875 26 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQ-V 104 (186)
Q Consensus 26 ~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~-~ 104 (186)
.+.+.||||||...... .....||++++|+|++....++.+.. .. .+.|.++|+||+|+.+....... .
T Consensus 148 ~~~i~liDTpG~~~~~~---~~~~~aD~vl~Vvd~~~~~~~~~l~~---~~----~~~p~ivv~NK~Dl~~~~~~~~~~~ 217 (341)
T 2p67_A 148 GYDVVIVETVGVGQSET---EVARMVDCFISLQIAGGGDDLQGIKK---GL----MEVADLIVINKDDGDNHTNVAIARH 217 (341)
T ss_dssp TCSEEEEEEECCTTHHH---HHHTTCSEEEEEECC------CCCCH---HH----HHHCSEEEECCCCTTCHHHHHHHHH
T ss_pred CCCEEEEeCCCccchHH---HHHHhCCEEEEEEeCCccHHHHHHHH---hh----hcccCEEEEECCCCCChHHHHHHHH
Confidence 35788999999654322 24689999999999986544332211 11 13688999999999753211111 1
Q ss_pred HH---HHHc-------CCcEEEeccCCCCCchHHHHHHHHHHh
Q 029875 105 TF---HRKK-------NLQYYEISAKSNYNFEKPFLYLARKLA 137 (186)
Q Consensus 105 ~~---~~~~-------~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 137 (186)
.+ .... ..+++.+||++|.|++++++.+.+.+.
T Consensus 218 ~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 218 MYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp HHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 11 1121 346899999999999999999998775
No 205
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=98.78 E-value=1e-09 Score=88.24 Aligned_cols=105 Identities=12% Similarity=0.108 Sum_probs=65.5
Q ss_pred EEEEEEEeCCCccc-------------cCCccccccccCcEEEE-EEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeC
Q 029875 26 KIRFYCWDTAGQEK-------------FGGLRDGYYIHGQCAII-MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNK 91 (186)
Q Consensus 26 ~~~l~l~Dt~G~~~-------------~~~~~~~~~~~ad~vil-v~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK 91 (186)
...+.||||||... +..+...|++.++.+|+ |.|++....-.....+++.+.. .+.|+++|+||
T Consensus 129 ~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i~~~~~~--~~~~~i~V~NK 206 (353)
T 2x2e_A 129 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKVAKEVDP--QGQRTIGVITK 206 (353)
T ss_dssp CCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHHHHHHHCT--TCTTEEEEEEC
T ss_pred CCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHHHHHHhCc--CCCceEEEecc
Confidence 36799999999643 34456667766655555 5566542221222223333322 47899999999
Q ss_pred CCCCCcccChHHHHHHHH------cC-CcEEEeccCCCCCchHHHHHHHH
Q 029875 92 VDVKNRQVKAKQVTFHRK------KN-LQYYEISAKSNYNFEKPFLYLAR 134 (186)
Q Consensus 92 ~Dl~~~~~~~~~~~~~~~------~~-~~~~~~Sa~~~~gi~~l~~~l~~ 134 (186)
+|+.+..... ..+... .+ .+++.+||++|.|+++++..+.+
T Consensus 207 ~Dl~~~~~~~--~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 207 LDLMDEGTDA--RDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp GGGSCTTCCC--HHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred ccccCcchhH--HHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence 9997532211 111111 12 25678999999999999999986
No 206
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=98.75 E-value=2.2e-11 Score=91.48 Aligned_cols=57 Identities=14% Similarity=0.209 Sum_probs=43.3
Q ss_pred CCCEEEEEeCCCCCCcc-cC-hHHHHHHHHc--CCcEEEeccCCCCCchHHHHHHHHHHhC
Q 029875 82 NIPIVLCGNKVDVKNRQ-VK-AKQVTFHRKK--NLQYYEISAKSNYNFEKPFLYLARKLAG 138 (186)
Q Consensus 82 ~~p~ilv~nK~Dl~~~~-~~-~~~~~~~~~~--~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 138 (186)
..|.++|+||+|+.+.. .. .+...++... +.+++++||++|.|++++|..+.+.+..
T Consensus 164 ~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~ 224 (226)
T 2hf9_A 164 KTADLIVINKIDLADAVGADIKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVKE 224 (226)
T ss_dssp TTCSEEEEECGGGHHHHTCCHHHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred hcCCEEEEeccccCchhHHHHHHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHHh
Confidence 46889999999986432 22 2334555544 5789999999999999999999987753
No 207
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=98.64 E-value=6.2e-08 Score=77.80 Aligned_cols=101 Identities=9% Similarity=-0.005 Sum_probs=62.4
Q ss_pred EEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCccc-ChHHHH
Q 029875 27 IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV-KAKQVT 105 (186)
Q Consensus 27 ~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~-~~~~~~ 105 (186)
+.+.|+||+|... ........+|++++|+|++.....+.+.. .+ ...|.++|+||+|+.+... ......
T Consensus 167 ~~~iliDT~Gi~~---~~~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i----l~~~~ivVlNK~Dl~~~~~~~~~~~~ 236 (349)
T 2www_A 167 YDIILIETVGVGQ---SEFAVADMVDMFVLLLPPAGGDELQGIKR---GI----IEMADLVAVTKSDGDLIVPARRIQAE 236 (349)
T ss_dssp CSEEEEECCCC-----CHHHHHTTCSEEEEEECCC-------------------CCSCSEEEECCCSGGGHHHHHHHHHH
T ss_pred CCEEEEECCCcch---hhhhHHhhCCEEEEEEcCCcchhHHHhHH---HH----HhcCCEEEEeeecCCCchhHHHHHHH
Confidence 5678999999532 12345678999999999987543322211 11 2468899999999864211 001111
Q ss_pred HHH----------HcCCcEEEeccCCCCCchHHHHHHHHHHh
Q 029875 106 FHR----------KKNLQYYEISAKSNYNFEKPFLYLARKLA 137 (186)
Q Consensus 106 ~~~----------~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 137 (186)
+.. .++.+++.+||++|.|++++++++.+.+.
T Consensus 237 l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~ 278 (349)
T 2www_A 237 YVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQD 278 (349)
T ss_dssp HHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHH
Confidence 211 12357899999999999999999998774
No 208
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=98.61 E-value=3.5e-08 Score=86.29 Aligned_cols=112 Identities=11% Similarity=0.091 Sum_probs=72.6
Q ss_pred EEEEEEeCCCcccc-------------CCcccccc-ccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCC
Q 029875 27 IRFYCWDTAGQEKF-------------GGLRDGYY-IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKV 92 (186)
Q Consensus 27 ~~l~l~Dt~G~~~~-------------~~~~~~~~-~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~ 92 (186)
..+.|+||||...- ..+...|+ ..+|++++|+|++...+-.+...++..+.. .+.|+++|.||+
T Consensus 150 ~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ll~~L~~--~g~pvIlVlNKi 227 (772)
T 3zvr_A 150 LNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDP--QGQRTIGVITKL 227 (772)
T ss_dssp CSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHHHHHHCT--TCSSEEEEEECT
T ss_pred CceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHHHHHHHh--cCCCEEEEEeCc
Confidence 36788999996441 12333444 578999999999875433332234444433 368999999999
Q ss_pred CCCCcccChHHHHHHHH------cC-CcEEEeccCCCCCchHHHHHHHHH---HhCCCCc
Q 029875 93 DVKNRQVKAKQVTFHRK------KN-LQYYEISAKSNYNFEKPFLYLARK---LAGDPNL 142 (186)
Q Consensus 93 Dl~~~~~~~~~~~~~~~------~~-~~~~~~Sa~~~~gi~~l~~~l~~~---i~~~~~~ 142 (186)
|+.+...... .+... .+ .+++.+||++|.|++++++.+.+. +.+.+..
T Consensus 228 Dlv~~~~~~~--~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e~~ffpe~P~y 285 (772)
T 3zvr_A 228 DLMDEGTDAR--DVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAERKFFLSHPSY 285 (772)
T ss_dssp TSSCTTCCSH--HHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHHHHHHHHCTTT
T ss_pred ccCCcchhhH--HHHHHHhhhhhccCCceEEecccccccchhHHHHHHHHHHhccCCcch
Confidence 9975432211 11111 12 256789999999999999999873 5555544
No 209
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=98.52 E-value=7e-07 Score=71.91 Aligned_cols=36 Identities=14% Similarity=-0.018 Sum_probs=28.8
Q ss_pred EEEEEEeCCCccccC----Ccccc---ccccCcEEEEEEeCCC
Q 029875 27 IRFYCWDTAGQEKFG----GLRDG---YYIHGQCAIIMFDVTA 62 (186)
Q Consensus 27 ~~l~l~Dt~G~~~~~----~~~~~---~~~~ad~vilv~D~~~ 62 (186)
..++||||||+.++. .+... +++.+|++++|+|+++
T Consensus 66 ~~i~lvDtpGl~~~a~~~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 66 TTMEFVDIAGLVAGASKGEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp CEEEEEECCSCCTTHHHHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred eEEEEEECCCCcccccccchHHHHHHHHHHhcCeEEEEEecCC
Confidence 579999999998753 34333 4789999999999986
No 210
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.48 E-value=1.5e-07 Score=74.25 Aligned_cols=91 Identities=14% Similarity=0.108 Sum_probs=63.9
Q ss_pred cccCCccccccccCcEEEEEEeCCChh-hHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCccc----ChHHHHHHHHcCC
Q 029875 38 EKFGGLRDGYYIHGQCAIIMFDVTARL-TYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV----KAKQVTFHRKKNL 112 (186)
Q Consensus 38 ~~~~~~~~~~~~~ad~vilv~D~~~~~-s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~----~~~~~~~~~~~~~ 112 (186)
++-..+.+..++++|.+++|+|+.++. +...+.+++..... .++|.+||.||+||.+... .....+.....+.
T Consensus 74 ~R~~~l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~--~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~ 151 (307)
T 1t9h_A 74 ERTNELIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEA--NDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGY 151 (307)
T ss_dssp CCSCEETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHT--TTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTC
T ss_pred chhhhhhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHH--CCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCC
Confidence 344556667899999999999999765 44444555543332 4789999999999976532 1222344445578
Q ss_pred cEEEeccCCCCCchHHHH
Q 029875 113 QYYEISAKSNYNFEKPFL 130 (186)
Q Consensus 113 ~~~~~Sa~~~~gi~~l~~ 130 (186)
+++.+||.+|.|+++++.
T Consensus 152 ~v~~~sa~~~~g~~~L~~ 169 (307)
T 1t9h_A 152 DVYLTSSKDQDSLADIIP 169 (307)
T ss_dssp CEEECCHHHHTTCTTTGG
T ss_pred eEEEEecCCCCCHHHHHh
Confidence 999999999988876654
No 211
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=98.47 E-value=4.1e-08 Score=83.36 Aligned_cols=67 Identities=18% Similarity=0.092 Sum_probs=51.8
Q ss_pred EEEEEeCCCccc-----------cCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCC
Q 029875 28 RFYCWDTAGQEK-----------FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN 96 (186)
Q Consensus 28 ~l~l~Dt~G~~~-----------~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 96 (186)
.+.||||||... |...+..++..+|++|+|+|+++.........|+..+.+. +.|+++|+||+|+..
T Consensus 155 ~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~--~~pvilVlNK~Dl~~ 232 (550)
T 2qpt_A 155 SISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGH--EDKIRVVLNKADMVE 232 (550)
T ss_dssp HCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTC--GGGEEEEEECGGGSC
T ss_pred CEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhc--CCCEEEEEECCCccC
Confidence 688999999864 3345566788999999999998864445556676666542 579999999999975
No 212
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=98.41 E-value=2.2e-06 Score=69.22 Aligned_cols=37 Identities=16% Similarity=0.034 Sum_probs=28.8
Q ss_pred EEEEEEEeCCCccccC----Cccc---cccccCcEEEEEEeCCC
Q 029875 26 KIRFYCWDTAGQEKFG----GLRD---GYYIHGQCAIIMFDVTA 62 (186)
Q Consensus 26 ~~~l~l~Dt~G~~~~~----~~~~---~~~~~ad~vilv~D~~~ 62 (186)
...++||||||+..+. .+.. ..++.+|++++|+|+++
T Consensus 68 ~~~i~lvDtpGl~~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 68 PTHVEFVDIAGLVKGAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCEEEEEECCSCCCCCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred CceEEEEECCCccccccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 4679999999997753 2333 24789999999999986
No 213
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.41 E-value=7.7e-08 Score=74.30 Aligned_cols=90 Identities=14% Similarity=0.069 Sum_probs=61.9
Q ss_pred CCccc-cCCccccccccCcEEEEEEeCCChhhHHh--HHHHHHHHHhhcCCCCEEEEEeCCCCCCcccChHHHHHHHHcC
Q 029875 35 AGQEK-FGGLRDGYYIHGQCAIIMFDVTARLTYKN--VPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKN 111 (186)
Q Consensus 35 ~G~~~-~~~~~~~~~~~ad~vilv~D~~~~~s~~~--i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~ 111 (186)
||+.. ........++.+|+++.|+|++++.+... +. |+ ++|.++|.||+|+.+.........+.+..+
T Consensus 5 PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~l~-ll--------~k~~iivlNK~DL~~~~~~~~~~~~~~~~g 75 (262)
T 3cnl_A 5 PGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYGVD-FS--------RKETIILLNKVDIADEKTTKKWVEFFKKQG 75 (262)
T ss_dssp ----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTTSC-CT--------TSEEEEEEECGGGSCHHHHHHHHHHHHHTT
T ss_pred chHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChHHH-hc--------CCCcEEEEECccCCCHHHHHHHHHHHHHcC
Confidence 55432 22345567889999999999999876543 22 21 789999999999976422222234445557
Q ss_pred CcEEEeccCCCCCchHHHHHHHH
Q 029875 112 LQYYEISAKSNYNFEKPFLYLAR 134 (186)
Q Consensus 112 ~~~~~~Sa~~~~gi~~l~~~l~~ 134 (186)
+++ .+||++|.|+++++..+..
T Consensus 76 ~~v-~iSa~~~~gi~~L~~~l~~ 97 (262)
T 3cnl_A 76 KRV-ITTHKGEPRKVLLKKLSFD 97 (262)
T ss_dssp CCE-EECCTTSCHHHHHHHHCCC
T ss_pred CeE-EEECCCCcCHHHHHHHHHH
Confidence 888 9999999999998877654
No 214
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.15 E-value=3.5e-06 Score=67.23 Aligned_cols=102 Identities=8% Similarity=0.019 Sum_probs=62.2
Q ss_pred EEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCC-cccChH-H
Q 029875 26 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVKAK-Q 103 (186)
Q Consensus 26 ~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~-~~~~~~-~ 103 (186)
.+.+.|+||+|...- .......+|.+++|+|++..+..+.+..++ . ..+.+++.||+|+.. ...... .
T Consensus 147 ~~~~iliDT~Gi~~~---~~~v~~~~d~vl~v~d~~~~~~~~~i~~~i---~----~~~~ivvlNK~Dl~~~~~~s~~~~ 216 (337)
T 2qm8_A 147 GFDVILVETVGVGQS---ETAVADLTDFFLVLMLPGAGDELQGIKKGI---F----ELADMIAVNKADDGDGERRASAAA 216 (337)
T ss_dssp TCCEEEEEECSSSSC---HHHHHTTSSEEEEEECSCC------CCTTH---H----HHCSEEEEECCSTTCCHHHHHHHH
T ss_pred CCCEEEEECCCCCcc---hhhHHhhCCEEEEEEcCCCcccHHHHHHHH---h----ccccEEEEEchhccCchhHHHHHH
Confidence 356788899996432 123457899999999987543322111111 1 235677779999753 211111 1
Q ss_pred HHHHHH----------cCCcEEEeccCCCCCchHHHHHHHHHHh
Q 029875 104 VTFHRK----------KNLQYYEISAKSNYNFEKPFLYLARKLA 137 (186)
Q Consensus 104 ~~~~~~----------~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 137 (186)
..+... +..+++.+||++|.|++++++.+.+...
T Consensus 217 ~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 217 SEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp HHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 122211 1357899999999999999999988764
No 215
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.10 E-value=1.1e-05 Score=64.77 Aligned_cols=83 Identities=8% Similarity=-0.015 Sum_probs=56.3
Q ss_pred ccccCcEEEEEEeCCChh-hHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCcccChHHHHH---HHHcCCcEEEeccCCC
Q 029875 47 YYIHGQCAIIMFDVTARL-TYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTF---HRKKNLQYYEISAKSN 122 (186)
Q Consensus 47 ~~~~ad~vilv~D~~~~~-s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~---~~~~~~~~~~~Sa~~~ 122 (186)
.+.++|.+++|... ++. +...+.+|+..... .+.|.+||.||+||.+.........| ....+++++.+||.+|
T Consensus 127 i~anvD~v~iv~a~-~P~~~~~~i~r~L~~a~~--~~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~~v~~~Sa~~~ 203 (358)
T 2rcn_A 127 IAANIDQIVIVSAI-LPELSLNIIDRYLVGCET--LQVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSSHTQ 203 (358)
T ss_dssp EEECCCEEEEEEES-TTTCCHHHHHHHHHHHHH--HTCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTCCEEECBTTTT
T ss_pred HHhcCCEEEEEEeC-CCCCCHHHHHHHHHHHHh--cCCCEEEEEECccCCCchhHHHHHHHHHHHHhCCCcEEEEecCCC
Confidence 46899999988665 443 44445555544433 36888999999999764321112233 3345789999999999
Q ss_pred CCchHHHHHH
Q 029875 123 YNFEKPFLYL 132 (186)
Q Consensus 123 ~gi~~l~~~l 132 (186)
.|++++...+
T Consensus 204 ~gl~~L~~~~ 213 (358)
T 2rcn_A 204 DGLKPLEEAL 213 (358)
T ss_dssp BTHHHHHHHH
T ss_pred cCHHHHHHhc
Confidence 9999887543
No 216
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=97.07 E-value=0.004 Score=50.27 Aligned_cols=72 Identities=14% Similarity=0.048 Sum_probs=45.1
Q ss_pred EEECCeEEEEEEEeCCCccccCC----ccc---cccccCcEEEEEEeCCChhhHHhHHHHHHHHHhh---cCCCCEEEEE
Q 029875 20 FFTNCGKIRFYCWDTAGQEKFGG----LRD---GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV---CENIPIVLCG 89 (186)
Q Consensus 20 ~~~~~~~~~l~l~Dt~G~~~~~~----~~~---~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~---~~~~p~ilv~ 89 (186)
+.+.+ .+++|+||||...-.. +.. ..++.||++++|+|++++.. .......++... ....|.+++.
T Consensus 114 ~~~~~--~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ad~il~vvD~~~p~~--~~~~i~~EL~~~~~~l~~k~~~i~~ 189 (376)
T 4a9a_A 114 IRYKG--AKIQMLDLPGIIDGAKDGRGRGKQVIAVARTCNLLFIILDVNKPLH--HKQIIEKELEGVGIRLNKTPPDILI 189 (376)
T ss_dssp EEETT--EEEEEEECGGGCCC-----CHHHHHHHHHHHCSEEEEEEETTSHHH--HHHHHHHHHHHTTEEETCCCCCEEE
T ss_pred EEeCC--cEEEEEeCCCccCCchhhhHHHHHHHHHHHhcCccccccccCccHH--HHHHHHHHHHHhhHhhccCChhhhh
Confidence 34444 4677889999743221 112 34578999999999998743 222222333322 2467889999
Q ss_pred eCCCCC
Q 029875 90 NKVDVK 95 (186)
Q Consensus 90 nK~Dl~ 95 (186)
||+|..
T Consensus 190 nK~d~~ 195 (376)
T 4a9a_A 190 KKKEKG 195 (376)
T ss_dssp EECSSS
T ss_pred hHhhhh
Confidence 999974
No 217
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=97.07 E-value=0.00045 Score=57.89 Aligned_cols=102 Identities=12% Similarity=0.077 Sum_probs=62.7
Q ss_pred EEEEEEEeCCCccccCC-cccc---c--cccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCE-EEEEeCCCCCCcc
Q 029875 26 KIRFYCWDTAGQEKFGG-LRDG---Y--YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI-VLCGNKVDVKNRQ 98 (186)
Q Consensus 26 ~~~l~l~Dt~G~~~~~~-~~~~---~--~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~-ilv~nK~Dl~~~~ 98 (186)
.+.+.|+||||...... +... . +..+|.+++|+|++...... .....+.+ ..|+ ++|.||+|...+.
T Consensus 183 ~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~---~~a~~~~~---~~~i~gvVlNK~D~~~~~ 256 (504)
T 2j37_W 183 NFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACE---AQAKAFKD---KVDVASVIVTKLDGHAKG 256 (504)
T ss_dssp TCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHH---HHHHHHHH---HHCCCCEEEECTTSCCCC
T ss_pred CCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHH---HHHHHHHh---hcCceEEEEeCCccccch
Confidence 35678899999764321 1111 1 22689999999998753311 22223332 2575 8899999986332
Q ss_pred cChHHHHHHHHcCCcE------------------EEeccCCCCC-chHHHHHHHHH
Q 029875 99 VKAKQVTFHRKKNLQY------------------YEISAKSNYN-FEKPFLYLARK 135 (186)
Q Consensus 99 ~~~~~~~~~~~~~~~~------------------~~~Sa~~~~g-i~~l~~~l~~~ 135 (186)
..........+.|+ +.+|+..|.| +.++++++.+.
T Consensus 257 --g~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 257 --GGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp --THHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred --HHHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 12233334444443 3468899999 99999988765
No 218
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=96.57 E-value=0.00064 Score=55.26 Aligned_cols=40 Identities=10% Similarity=-0.203 Sum_probs=23.8
Q ss_pred EEEEEEeCCCccccCC-------ccccccccCcEEEEEEeCCChhhH
Q 029875 27 IRFYCWDTAGQEKFGG-------LRDGYYIHGQCAIIMFDVTARLTY 66 (186)
Q Consensus 27 ~~l~l~Dt~G~~~~~~-------~~~~~~~~ad~vilv~D~~~~~s~ 66 (186)
..+++|||||+..+.. .+..+++++|++++|+|+++..++
T Consensus 86 ~~i~lvDtpGl~~~as~~~glg~~~l~~ir~aD~Il~VvD~~~~~~i 132 (396)
T 2ohf_A 86 AFLNVVDIAGLVKGAHNGQGLGNAFLSHISACDGIFHLTRAFEDDDI 132 (396)
T ss_dssp CEEEEEECCC-----------CCHHHHHHHTSSSEEEEEEC------
T ss_pred cccEEEECCCcccccchhhHHHHHHHHHHHhcCeEEEEEecCCCcch
Confidence 3599999999877543 345667899999999999875544
No 219
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=96.08 E-value=0.045 Score=44.38 Aligned_cols=55 Identities=11% Similarity=0.038 Sum_probs=38.1
Q ss_pred CCCEEEEEeCCCCC---C-cccChHHHHHHHHcC--CcEEEeccCC---------------------CCCchHHHHHHHH
Q 029875 82 NIPIVLCGNKVDVK---N-RQVKAKQVTFHRKKN--LQYYEISAKS---------------------NYNFEKPFLYLAR 134 (186)
Q Consensus 82 ~~p~ilv~nK~Dl~---~-~~~~~~~~~~~~~~~--~~~~~~Sa~~---------------------~~gi~~l~~~l~~ 134 (186)
..|++.++|+.|.. + ........+++...+ .+++.+||+. +.|++.+.....+
T Consensus 224 ~kp~~y~~Nv~e~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~sa~~E~~l~~l~~~~~~~~l~~~g~~~gl~~~i~~~~~ 303 (392)
T 1ni3_A 224 AKPVIYLVNMSERDFLRQKNKYLPKIKKWIDENSPGDTLIPMSVAFEERLTNFTEEEAIEECKKLNTKSMLPKIIVTGYN 303 (392)
T ss_dssp GSCEEEEEECCHHHHTTTCCSSHHHHHHHHHTTSTTCCEEEECHHHHHHHTTSCHHHHHHHHHHTTCCCSHHHHHHHHHH
T ss_pred cCceEEEEEecchhhcccchHHHHHHHHHHHhcCCCCeEEEEEhHHHHHHhhCCHHHHHHHHHHhCCcccHHHHHHHHHH
Confidence 37999999999842 1 111223446666665 7899999986 6788888888865
Q ss_pred HH
Q 029875 135 KL 136 (186)
Q Consensus 135 ~i 136 (186)
.+
T Consensus 304 ~L 305 (392)
T 1ni3_A 304 AL 305 (392)
T ss_dssp HT
T ss_pred Hh
Confidence 44
No 220
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=95.46 E-value=0.029 Score=40.44 Aligned_cols=84 Identities=7% Similarity=-0.046 Sum_probs=56.5
Q ss_pred EEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhh---cCCCCEEEEEeCCCCCCcccChHH
Q 029875 27 IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV---CENIPIVLCGNKVDVKNRQVKAKQ 103 (186)
Q Consensus 27 ~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~---~~~~p~ilv~nK~Dl~~~~~~~~~ 103 (186)
+.+.|+|+|+.. .......+..||.+|+++..+... ..+..+++.+.+. .++.++.+|.|+++.... ...+.
T Consensus 76 yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~~~-~~~~~ 150 (206)
T 4dzz_A 76 YDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPLD--FSAAGSVVTVLEAQAYSRKVEARFLITRKIEMAT-MLNVL 150 (206)
T ss_dssp SSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTTT--HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTTEE-EEHHH
T ss_pred CCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHHH--HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCch-HHHHH
Confidence 566788998765 344556677899999999887653 5566666666554 245778999999985422 33344
Q ss_pred HHHHHHcCCcEE
Q 029875 104 VTFHRKKNLQYY 115 (186)
Q Consensus 104 ~~~~~~~~~~~~ 115 (186)
.++.+.++.+++
T Consensus 151 ~~~l~~~~~~vl 162 (206)
T 4dzz_A 151 KESIKDTGVKAF 162 (206)
T ss_dssp HHHHHHHTCCBC
T ss_pred HHHHHHcCCcee
Confidence 555566666554
No 221
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.42 E-value=0.044 Score=45.14 Aligned_cols=93 Identities=14% Similarity=0.063 Sum_probs=54.2
Q ss_pred EEEEEEeCCCccccCC-----ccc-cccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCcccC
Q 029875 27 IRFYCWDTAGQEKFGG-----LRD-GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK 100 (186)
Q Consensus 27 ~~l~l~Dt~G~~~~~~-----~~~-~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~ 100 (186)
+.+.|+||+|...... +.. .....++.+++|+|++..... ......+... -.+..+|.||.|...+.
T Consensus 183 ~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a---~~~a~~f~~~--~~i~gVIlTKlD~~~~g-- 255 (443)
T 3dm5_A 183 VDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQA---YNQALAFKEA--TPIGSIIVTKLDGSAKG-- 255 (443)
T ss_dssp CSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGH---HHHHHHHHHS--CTTEEEEEECCSSCSSH--
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhH---HHHHHHHHhh--CCCeEEEEECCCCcccc--
Confidence 5677889999543221 111 112357999999999864332 2222333332 23566899999975332
Q ss_pred hHHHHHHHHcCCcEEEeccCCCCCchHH
Q 029875 101 AKQVTFHRKKNLQYYEISAKSNYNFEKP 128 (186)
Q Consensus 101 ~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 128 (186)
..........+.|+..++. |++++++
T Consensus 256 G~~ls~~~~~g~PI~fig~--Ge~vddL 281 (443)
T 3dm5_A 256 GGALSAVAATGAPIKFIGT--GEKIDDI 281 (443)
T ss_dssp HHHHHHHHTTCCCEEEEEC--SSSTTCE
T ss_pred cHHHHHHHHHCCCEEEEEc--CCChHHh
Confidence 1233455567888887775 6655443
No 222
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.22 E-value=0.048 Score=42.43 Aligned_cols=93 Identities=12% Similarity=0.060 Sum_probs=56.1
Q ss_pred EEEEEEEeCCCccc--cC-Cccc-----cccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCC-EEEEEeCCCCCC
Q 029875 26 KIRFYCWDTAGQEK--FG-GLRD-----GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKN 96 (186)
Q Consensus 26 ~~~l~l~Dt~G~~~--~~-~~~~-----~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p-~ilv~nK~Dl~~ 96 (186)
.+.+.|+||||... .. .+.. ..+..+|.+++|+|++.. .+.....+.+.. ..| ..+|.||+|...
T Consensus 180 ~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g---~~~~~~~~~~~~---~~~i~gvVlnk~D~~~ 253 (297)
T 1j8m_F 180 KMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIG---QKAYDLASKFNQ---ASKIGTIIITKMDGTA 253 (297)
T ss_dssp TCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGG---GGHHHHHHHHHH---TCTTEEEEEECGGGCT
T ss_pred CCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCch---HHHHHHHHHHHh---hCCCCEEEEeCCCCCc
Confidence 34677889999765 21 1111 123468999999998743 222222333332 456 778999999753
Q ss_pred cccChHHHHHHHHcCCcEEEeccCCCCCchHH
Q 029875 97 RQVKAKQVTFHRKKNLQYYEISAKSNYNFEKP 128 (186)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 128 (186)
+. .....+....+.|+..++ .|++++++
T Consensus 254 ~~--g~~~~~~~~~~~pi~~i~--~Ge~v~dl 281 (297)
T 1j8m_F 254 KG--GGALSAVAATGATIKFIG--TGEKIDEL 281 (297)
T ss_dssp TH--HHHHHHHHTTTCCEEEEE--CSSSTTCE
T ss_pred ch--HHHHHHHHHHCcCEEEEe--CCCChhhc
Confidence 21 123456677788887776 57776553
No 223
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=95.07 E-value=0.027 Score=46.25 Aligned_cols=84 Identities=15% Similarity=0.069 Sum_probs=48.2
Q ss_pred EEEEEEEeCCCccccCC-----cc-ccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCC-C-EEEEEeCCCCCCc
Q 029875 26 KIRFYCWDTAGQEKFGG-----LR-DGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENI-P-IVLCGNKVDVKNR 97 (186)
Q Consensus 26 ~~~l~l~Dt~G~~~~~~-----~~-~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~-p-~ilv~nK~Dl~~~ 97 (186)
.+.+.|+||||...... +. -..+..+|.+++|+|++.... .......+ .... | ..+|.||+|...+
T Consensus 180 ~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~---~~~~~~~~---~~~~~~i~gvVlnK~D~~~~ 253 (432)
T 2v3c_C 180 KADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQ---AGIQAKAF---KEAVGEIGSIIVTKLDGSAK 253 (432)
T ss_dssp SCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGG---HHHHHHHH---HTTSCSCEEEEEECSSSCST
T ss_pred CCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHH---HHHHHHHH---hhcccCCeEEEEeCCCCccc
Confidence 35677889999654211 10 011236899999999976532 22222222 2345 6 8899999997532
Q ss_pred ccChHHHHHHHHcCCcEEEe
Q 029875 98 QVKAKQVTFHRKKNLQYYEI 117 (186)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~ 117 (186)
. .....+....+.++..+
T Consensus 254 ~--g~~l~~~~~~~~pi~~i 271 (432)
T 2v3c_C 254 G--GGALSAVAETKAPIKFI 271 (432)
T ss_dssp T--HHHHHHHHHSSCCEEEE
T ss_pred h--HHHHHHHHHHCCCEEEe
Confidence 1 22334556666665554
No 224
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=94.10 E-value=0.16 Score=37.08 Aligned_cols=86 Identities=12% Similarity=-0.007 Sum_probs=55.2
Q ss_pred EEEEEEEeCCCc-cccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCcccChHHH
Q 029875 26 KIRFYCWDTAGQ-EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQV 104 (186)
Q Consensus 26 ~~~l~l~Dt~G~-~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~ 104 (186)
.+.+.++|||+. .. ......+..||.+|+++..+. .+...+...++.+.... +.++.+|.|+++........+..
T Consensus 67 ~yD~viiD~p~~~~~--~~~~~~l~~aD~viiv~~~~~-~~~~~~~~~~~~l~~~~-~~~~~vv~N~~~~~~~~~~~~~~ 142 (209)
T 3cwq_A 67 KYQNIVIDTQARPED--EDLEALADGCDLLVIPSTPDA-LALDALMLTIETLQKLG-NNRFRILLTIIPPYPSKDGDEAR 142 (209)
T ss_dssp GCSEEEEEEECCCSS--SHHHHHHHTSSEEEEEECSSH-HHHHHHHHHHHHHHHTC-SSSEEEEECSBCCTTSCHHHHHH
T ss_pred cCCEEEEeCCCCcCc--HHHHHHHHHCCEEEEEecCCc-hhHHHHHHHHHHHHhcc-CCCEEEEEEecCCccchHHHHHH
Confidence 356778899875 32 334556778999999998764 45666666666665532 56788999999865311223344
Q ss_pred HHHHHcCCcEE
Q 029875 105 TFHRKKNLQYY 115 (186)
Q Consensus 105 ~~~~~~~~~~~ 115 (186)
+..++++.+++
T Consensus 143 ~~l~~~g~~v~ 153 (209)
T 3cwq_A 143 QLLTTAGLPLF 153 (209)
T ss_dssp HHHHHTTCCBC
T ss_pred HHHHHcCCchh
Confidence 55555666544
No 225
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=93.58 E-value=0.3 Score=36.72 Aligned_cols=65 Identities=12% Similarity=0.103 Sum_probs=46.5
Q ss_pred EEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCC
Q 029875 26 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVD 93 (186)
Q Consensus 26 ~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~D 93 (186)
.+.+.|+|+|+.. .......+..||.+|+++..+. .+...+...++.+.....+.++.+|.|++.
T Consensus 144 ~yD~viiD~pp~~--~~~~~~~l~~aD~vivv~~~~~-~s~~~~~~~~~~l~~~~~~~~~~vv~N~~~ 208 (267)
T 3k9g_A 144 KYDYIVIDTNPSL--DVTLKNALLCSDYVIIPMTAEK-WAVESLDLFNFFVRKLNLFLPIFLIITRFK 208 (267)
T ss_dssp TCSEEEEEECSSC--SHHHHHHHTTCSEEEEEEESCT-THHHHHHHHHHHHHTTTCCCCEEEEEEEEC
T ss_pred CCCEEEEECcCCc--cHHHHHHHHHCCeEEEEeCCCh-HHHHHHHHHHHHHHHHhccCCEEEEEeccc
Confidence 3567788998754 2334455667999999999865 466666666766666555678889999993
No 226
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=92.94 E-value=0.19 Score=41.27 Aligned_cols=92 Identities=12% Similarity=0.072 Sum_probs=54.0
Q ss_pred EEEEEEEeCCCcccc--CC-ccc---c--ccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCc
Q 029875 26 KIRFYCWDTAGQEKF--GG-LRD---G--YYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR 97 (186)
Q Consensus 26 ~~~l~l~Dt~G~~~~--~~-~~~---~--~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 97 (186)
.+.+.|+||||...+ .. +.. . .....+.+++|+|++..... ......+... -.+..||.||.|...+
T Consensus 179 ~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a---~~~a~~f~~~--~~~~gVIlTKlD~~a~ 253 (433)
T 3kl4_A 179 KMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKA---YDLASRFHQA--SPIGSVIITKMDGTAK 253 (433)
T ss_dssp TCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGG---HHHHHHHHHH--CSSEEEEEECGGGCSC
T ss_pred CCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHH---HHHHHHHhcc--cCCcEEEEeccccccc
Confidence 345668899996441 11 111 1 11246899999999865332 2233333332 2467899999997532
Q ss_pred ccChHHHHHHHHcCCcEEEeccCCCCCch
Q 029875 98 QVKAKQVTFHRKKNLQYYEISAKSNYNFE 126 (186)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 126 (186)
. ..........+.|+..++. |++++
T Consensus 254 ~--G~als~~~~~g~Pi~fig~--Ge~v~ 278 (433)
T 3kl4_A 254 G--GGALSAVVATGATIKFIGT--GEKID 278 (433)
T ss_dssp H--HHHHHHHHHHTCEEEEEEC--CSSSS
T ss_pred c--hHHHHHHHHHCCCEEEEEC--CCChH
Confidence 1 2234555667899888776 66653
No 227
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=92.03 E-value=1.1 Score=32.93 Aligned_cols=86 Identities=8% Similarity=-0.087 Sum_probs=57.3
Q ss_pred EEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc-CCCCEEEEEeCCCCCCcccChHHH
Q 029875 26 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQVKAKQV 104 (186)
Q Consensus 26 ~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~ 104 (186)
.+.+.|+|+|+.. .......+..||.+|+++..+ ..+...+..+++.+.+.. +...+.+|.|+.+..... .. .
T Consensus 118 ~yD~viiD~p~~~--~~~~~~~l~~ad~viiv~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~v~N~~~~~~~~-~~--~ 191 (245)
T 3ea0_A 118 FYDYIIVDFGASI--DHVGVWVLEHLDELCIVTTPS-LQSLRRAGQLLKLCKEFEKPISRIEIILNRADTNSRI-TS--D 191 (245)
T ss_dssp HCSEEEEEEESSC--CTTHHHHGGGCSEEEEEECSS-HHHHHHHHHHHHHHHTCSSCCSCEEEEEESTTSCTTS-CH--H
T ss_pred hCCEEEEeCCCCC--chHHHHHHHHCCEEEEEecCc-HHHHHHHHHHHHHHHHhCCCccceEEEEecCCCCCCC-CH--H
Confidence 4667888998754 334556678899999999876 456777777777776543 245678999999864321 11 2
Q ss_pred HHHHHcCCcEEEe
Q 029875 105 TFHRKKNLQYYEI 117 (186)
Q Consensus 105 ~~~~~~~~~~~~~ 117 (186)
.+.+.++.+++..
T Consensus 192 ~~~~~~~~~v~~~ 204 (245)
T 3ea0_A 192 EIEKVIGRPISKR 204 (245)
T ss_dssp HHHHHHTSCEEEE
T ss_pred HHHHHhCCCeEEE
Confidence 3445567776654
No 228
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=91.81 E-value=1.8 Score=33.15 Aligned_cols=84 Identities=10% Similarity=0.067 Sum_probs=54.5
Q ss_pred EEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc--CCCCEE-EEEeCCCCCCcccChH
Q 029875 26 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIV-LCGNKVDVKNRQVKAK 102 (186)
Q Consensus 26 ~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~--~~~p~i-lv~nK~Dl~~~~~~~~ 102 (186)
.+.+.|+||++..... .....+..||.+|+|...+. .+...+..+++.+.... .+.+++ +|.|+.+-. ..
T Consensus 156 ~yD~ViiD~p~~~~~~-~~~~~l~~aD~viiv~~~~~-~s~~~~~~~~~~l~~~~~~~~~~~~gvV~N~~~~~-----~~ 228 (307)
T 3end_A 156 DTDVVIFDVLGDVVCG-GFAAPLQHADQAVVVTANDF-DSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRAT-----DE 228 (307)
T ss_dssp SCSEEEEEECCSSCCG-GGGGGGGTCSEEEEEECSSH-HHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSCC-----HH
T ss_pred cCCEEEEeCCCccchH-HHHHHHHHCCEEEEEecCcH-HHHHHHHHHHHHHHHhhhcCCCceEEEEEecCCcH-----HH
Confidence 4667788997743321 22345678999999997654 46666666666666542 456655 899999832 23
Q ss_pred HHHHHHHcCCcEEE
Q 029875 103 QVTFHRKKNLQYYE 116 (186)
Q Consensus 103 ~~~~~~~~~~~~~~ 116 (186)
...+.+.++.+++.
T Consensus 229 ~~~~~~~~g~~v~~ 242 (307)
T 3end_A 229 VDRFCKETNFRRLA 242 (307)
T ss_dssp HHHHHHHHTCCEEE
T ss_pred HHHHHHHcCCCcee
Confidence 44566677777664
No 229
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=91.61 E-value=0.52 Score=35.26 Aligned_cols=67 Identities=7% Similarity=-0.018 Sum_probs=43.1
Q ss_pred EEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHH---Hhh-cCCCCEE-EEEeCCCCC
Q 029875 26 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL---CRV-CENIPIV-LCGNKVDVK 95 (186)
Q Consensus 26 ~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~---~~~-~~~~p~i-lv~nK~Dl~ 95 (186)
.+.+.|+|+|+.... .....+..||.+|+++..+.. ++..+..+++.+ ... ..+.+++ +|.|+.+..
T Consensus 111 ~yD~iiiD~pp~~~~--~~~~~l~~aD~viiv~~~~~~-s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~N~~~~~ 182 (257)
T 1wcv_1 111 GYDLVLLDAPPSLSP--LTLNALAAAEGVVVPVQAEYY-ALEGVAGLLATLEEVRAGLNPRLRLLGILVTMYDGR 182 (257)
T ss_dssp TCSEEEEECCSSCCH--HHHHHHHHCSEEEEEEESSTH-HHHHHHHHHHHHHHHHHHTCTTCEEEEEEEESBCTT
T ss_pred CCCEEEEeCCCCCCH--HHHHHHHHCCeEEEEecCchH-HHHHHHHHHHHHHHHHHHhCCCceEEEEEEEeECCC
Confidence 456778899875432 234456679999999998753 444444444433 332 2466765 899999854
No 230
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=90.87 E-value=0.044 Score=43.95 Aligned_cols=94 Identities=10% Similarity=-0.038 Sum_probs=53.3
Q ss_pred EEEEeCCCccccCCcc----c----ccc--ccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCcc
Q 029875 29 FYCWDTAGQEKFGGLR----D----GYY--IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ 98 (186)
Q Consensus 29 l~l~Dt~G~~~~~~~~----~----~~~--~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 98 (186)
+.++||||......+. . .++ +..+.++++++.....-+..+.. +..+. ..+.|++++.||+|.....
T Consensus 214 ~~liDtPG~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~-l~~l~--~~~~~~~~v~~k~d~~~~~ 290 (369)
T 3ec1_A 214 ATLYDTPGIINHHQMAHFVDARDLKIITPKREIHPRVYQLNEGQTLFFGGLAR-LDYIK--GGRRSFVCYMANELTVHRT 290 (369)
T ss_dssp CEEEECCSCCCCSSGGGGSCTTTHHHHSCSSCCCCEEEEECTTEEEEETTTEE-EEEEE--SSSEEEEEEECTTSCEEEE
T ss_pred eEEEeCCCcCcHHHHHHHHhHHHHHHHhcccccCceEEEEcCCceEEECCEEE-EEEcc--CCCceEEEEecCCcccccc
Confidence 6788999965433211 1 111 56899999999843211111100 00111 1367999999999987654
Q ss_pred cChHHH-HHHHHcCCcEEEeccCCCCCc
Q 029875 99 VKAKQV-TFHRKKNLQYYEISAKSNYNF 125 (186)
Q Consensus 99 ~~~~~~-~~~~~~~~~~~~~Sa~~~~gi 125 (186)
...... .+.+..+..+...++....++
T Consensus 291 ~~~~~~~~~~~~~g~~l~p~~~~~~~~~ 318 (369)
T 3ec1_A 291 KLEKADSLYANQLGELLSPPSKRYAAEF 318 (369)
T ss_dssp EGGGHHHHHHHHBTTTBCSSCGGGTTTC
T ss_pred cHHHHHHHHHHhcCCccCCCCchhhhhc
Confidence 444443 455566766666666554444
No 231
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=90.43 E-value=0.029 Score=45.00 Aligned_cols=89 Identities=7% Similarity=-0.035 Sum_probs=48.5
Q ss_pred EEEEeCCCccccCCcc----ccc------cccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCcc
Q 029875 29 FYCWDTAGQEKFGGLR----DGY------YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ 98 (186)
Q Consensus 29 l~l~Dt~G~~~~~~~~----~~~------~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 98 (186)
+.++||||......+. ... .+..+.++++++.....-+..+.. +..+. ....|+++++||+|..+..
T Consensus 213 ~~liDtPG~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~-~d~l~--~~~~~~~~v~nk~d~~~~~ 289 (368)
T 3h2y_A 213 SSLYDTPGIINHHQMAHYVGKQSLKLITPTKEIKPMVFQLNEEQTLFFSGLAR-FDYVS--GGRRAFTCHFSNRLTIHRT 289 (368)
T ss_dssp CEEEECCCBCCTTSGGGGSCHHHHHHHSCSSCCCCEEEEECTTEEEEETTTEE-EEEEE--SSSEEEEEEECTTSCEEEE
T ss_pred eEEEeCCCcCcHHHHHHHhhHHHHHHhccccccCceEEEEcCCCEEEEcceEE-EEEec--CCCceEEEEecCccccccc
Confidence 6788999975433221 111 356788899998743211111100 00011 1367999999999987654
Q ss_pred cChHHH-HHHHHcCCcEEEeccC
Q 029875 99 VKAKQV-TFHRKKNLQYYEISAK 120 (186)
Q Consensus 99 ~~~~~~-~~~~~~~~~~~~~Sa~ 120 (186)
...... .+.+..+..++..++.
T Consensus 290 ~~~~~~~~~~~~~g~~l~p~~~~ 312 (368)
T 3h2y_A 290 KLEKADELYKNHAGDLLSPPTPE 312 (368)
T ss_dssp EHHHHHHHHHHHBTTTBCSSCHH
T ss_pred cHHHHHHHHHHHhCCccCCCchh
Confidence 444443 3445556555444443
No 232
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=89.38 E-value=1.2 Score=32.41 Aligned_cols=84 Identities=10% Similarity=-0.005 Sum_probs=52.4
Q ss_pred EEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCcccChHHHH
Q 029875 26 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVT 105 (186)
Q Consensus 26 ~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~ 105 (186)
.+.+.++|+|+... ......+..+|.+|++...+. .+...+...++.+.+. ....+.+|.|+.+..... .....
T Consensus 111 ~yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~~~-~~~~~~~~~~~~l~~~-~~~~~~vv~N~~~~~~~~--~~~~~ 184 (237)
T 1g3q_A 111 KFDFILIDCPAGLQ--LDAMSAMLSGEEALLVTNPEI-SCLTDTMKVGIVLKKA-GLAILGFVLNRYGRSDRD--IPPEA 184 (237)
T ss_dssp GCSEEEEECCSSSS--HHHHHHHTTCSEEEEEECSCH-HHHHHHHHHHHHHHHT-TCEEEEEEEEEETSCTTC--CCHHH
T ss_pred cCCEEEEECCCCcC--HHHHHHHHHCCeEEEEecCCc-ccHHHHHHHHHHHHhC-CCceEEEEEecCCcccch--hHHHH
Confidence 35677889987533 334456778999999998764 4666666666666554 223456889999864332 22233
Q ss_pred HHHHcCCcEE
Q 029875 106 FHRKKNLQYY 115 (186)
Q Consensus 106 ~~~~~~~~~~ 115 (186)
+.+..+.+++
T Consensus 185 ~~~~~~~~~~ 194 (237)
T 1g3q_A 185 AEDVMEVPLL 194 (237)
T ss_dssp HHHHHCSCEE
T ss_pred HHHHhCccce
Confidence 4455566654
No 233
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=89.18 E-value=1.2 Score=33.12 Aligned_cols=84 Identities=5% Similarity=-0.091 Sum_probs=52.0
Q ss_pred EEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCcccChHHHH
Q 029875 26 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVT 105 (186)
Q Consensus 26 ~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~ 105 (186)
.+.+.|+|+|+... ......+..+|.+|+++..+. .+...+..+++.+.+. ...++-+|.|+.+..... .....
T Consensus 110 ~yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~~~-~~~~~~~~~~~~l~~~-~~~~~~vv~N~~~~~~~~--~~~~~ 183 (263)
T 1hyq_A 110 STDILLLDAPAGLE--RSAVIAIAAAQELLLVVNPEI-SSITDGLKTKIVAERL-GTKVLGVVVNRITTLGIE--MAKNE 183 (263)
T ss_dssp TCSEEEEECCSSSS--HHHHHHHHHSSEEEEEECSSH-HHHHHHHHHHHHHHHH-TCEEEEEEEEEECTTTHH--HHHHH
T ss_pred hCCEEEEeCCCCCC--hHHHHHHHHCCEEEEEeCCCh-hHHHHHHHHHHHHHhc-CCCeeEEEEccCCccccc--chHHH
Confidence 35677889987433 334456678999999988764 4566666666666554 223455899999864322 22234
Q ss_pred HHHHcCCcEE
Q 029875 106 FHRKKNLQYY 115 (186)
Q Consensus 106 ~~~~~~~~~~ 115 (186)
+.+..+.+++
T Consensus 184 ~~~~~~~~~~ 193 (263)
T 1hyq_A 184 IEAILEAKVI 193 (263)
T ss_dssp HHHHTTSCEE
T ss_pred HHHHhCCCeE
Confidence 4455666544
No 234
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=88.80 E-value=1.2 Score=36.14 Aligned_cols=108 Identities=16% Similarity=0.140 Sum_probs=61.3
Q ss_pred EEEEEeCCCccccCCcccc-----ccccCcEEEEEEeCC--ChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCC--C--
Q 029875 28 RFYCWDTAGQEKFGGLRDG-----YYIHGQCAIIMFDVT--ARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK--N-- 96 (186)
Q Consensus 28 ~l~l~Dt~G~~~~~~~~~~-----~~~~ad~vilv~D~~--~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~--~-- 96 (186)
.+.+||++|.......... -+.+.+.+++ ++.. .+... .....+.+ .+.|+++|.||.|+. +
T Consensus 121 ~ltv~D~~g~~~~~~~~~~~L~~~~L~~~~~~~~-lS~G~~~kqrv----~la~aL~~--~~~p~~lV~tkpdlllLDEP 193 (413)
T 1tq4_A 121 NVVFWDLPGIGSTNFPPDTYLEKMKFYEYDFFII-ISATRFKKNDI----DIAKAISM--MKKEFYFVRTKVDSDITNEA 193 (413)
T ss_dssp TEEEEECCCGGGSSCCHHHHHHHTTGGGCSEEEE-EESSCCCHHHH----HHHHHHHH--TTCEEEEEECCHHHHHHHHH
T ss_pred CeeehHhhcccchHHHHHHHHHHcCCCccCCeEE-eCCCCccHHHH----HHHHHHHh--cCCCeEEEEecCcccccCcc
Confidence 5788999985321111111 2334455555 7776 32111 12222322 268999999999974 1
Q ss_pred ----cccChH-H----HHHH----HHcC---CcEEEecc--CCCCCchHHHHHHHHHHhCCCCc
Q 029875 97 ----RQVKAK-Q----VTFH----RKKN---LQYYEISA--KSNYNFEKPFLYLARKLAGDPNL 142 (186)
Q Consensus 97 ----~~~~~~-~----~~~~----~~~~---~~~~~~Sa--~~~~gi~~l~~~l~~~i~~~~~~ 142 (186)
+..... . .+++ .+.+ ..++.+|+ ..+.|++++.+.+.+.+.+.+..
T Consensus 194 tsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg~~~ 257 (413)
T 1tq4_A 194 DGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIYKRH 257 (413)
T ss_dssp TTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGGGHH
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCccchhh
Confidence 111111 1 2232 1222 35788999 77778999999999988665543
No 235
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=87.97 E-value=0.55 Score=34.86 Aligned_cols=87 Identities=10% Similarity=-0.048 Sum_probs=53.5
Q ss_pred EEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc-------CCCCEEEEEeCCCCCCcc
Q 029875 26 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-------ENIPIVLCGNKVDVKNRQ 98 (186)
Q Consensus 26 ~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-------~~~p~ilv~nK~Dl~~~~ 98 (186)
.+.+.|+|+|+... ......+..||.+|+++..+. .+...+..+++.+.... ....+.+|.|+.+.....
T Consensus 113 ~yD~viiD~p~~~~--~~~~~~l~~ad~vi~v~~~~~-~s~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~N~~~~~~~~ 189 (260)
T 3q9l_A 113 DFEFIVCDSPAGIE--TGALMALYFADEAIITTNPEV-SSVRDSDRILGILASKSRRAENGEEPIKEHLLLTRYNPGRVS 189 (260)
T ss_dssp TCSEEEEECCSSSS--HHHHHHHHTCSEEEEEECSSH-HHHHHHHHHHHHHTTSSHHHHTTCSCCEEEEEEEEECHHHHH
T ss_pred CCCEEEEcCCCCCC--HHHHHHHHhCCEEEEEecCCh-hHHHHHHHHHHHHHHhccccccccCCcceEEEEecCCccccc
Confidence 46678889987433 345566778999999998764 46666666666655432 125678999999843211
Q ss_pred c--ChHHHHHHHHcCCcEE
Q 029875 99 V--KAKQVTFHRKKNLQYY 115 (186)
Q Consensus 99 ~--~~~~~~~~~~~~~~~~ 115 (186)
. ......+...++.+++
T Consensus 190 ~~~~~~~~~~~~~~~~~~~ 208 (260)
T 3q9l_A 190 RGDMLSMEDVLEILRIKLV 208 (260)
T ss_dssp TTSSCCHHHHHHHHCSEEE
T ss_pred cccccCHHHHHHHhCCceE
Confidence 0 1111344455676655
No 236
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=87.96 E-value=1.6 Score=31.97 Aligned_cols=65 Identities=14% Similarity=-0.018 Sum_probs=44.7
Q ss_pred eEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCC
Q 029875 25 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVD 93 (186)
Q Consensus 25 ~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~D 93 (186)
..+.+.|+|||+... ......+..||.+|+++..+. .++..+..+.+.+... .-..+.+|.|+.+
T Consensus 130 ~~yD~viiD~pp~~~--~~~~~~l~~aD~viiv~~~~~-~s~~~~~~~~~~~~~~-~~~~~~~v~N~~~ 194 (254)
T 3kjh_A 130 DKKEAVVMDMGAGIE--HLTRGTAKAVDMMIAVIEPNL-NSIKTGLNIEKLAGDL-GIKKVRYVINKVR 194 (254)
T ss_dssp TCCSEEEEEECTTCT--TCCHHHHTTCSEEEEEECSSH-HHHHHHHHHHHHHHHH-TCSCEEEEEEEEC
T ss_pred CCCCEEEEeCCCccc--HHHHHHHHHCCEEEEecCCCH-HHHHHHHHHHHHHHHc-CCccEEEEEeCCC
Confidence 346778889987543 255566788999999998864 4666666555544433 2245789999998
No 237
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=87.77 E-value=2.6 Score=34.37 Aligned_cols=63 Identities=13% Similarity=0.129 Sum_probs=32.3
Q ss_pred EEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCcccChHHHHH----HHHcCCcEEEecc
Q 029875 53 CAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTF----HRKKNLQYYEISA 119 (186)
Q Consensus 53 ~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~----~~~~~~~~~~~Sa 119 (186)
+++|+.|++...+-.+ ++-+.....+.|+|+|.||+|............. ....+++++.+|.
T Consensus 151 ~v~fI~d~~~~l~~~D----ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~ 217 (427)
T 2qag_B 151 CLYFIAPTGHSLKSLD----LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPT 217 (427)
T ss_dssp EEEEECCCC---CHHH----HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC-
T ss_pred EEEEEeCCCCCCCHHH----HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCC
Confidence 4666677665433222 1222223357899999999998643222222111 2234667776664
No 238
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=87.65 E-value=0.84 Score=34.23 Aligned_cols=89 Identities=13% Similarity=0.086 Sum_probs=52.6
Q ss_pred eEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEE-EEEeCCCCC-----Cc-
Q 029875 25 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIV-LCGNKVDVK-----NR- 97 (186)
Q Consensus 25 ~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~i-lv~nK~Dl~-----~~- 97 (186)
..+.+.|+|||+......+....+..+|.+|++...+. .+...+...++.+.+. +.+++ +|.|+.+.. .+
T Consensus 127 ~~yD~ViID~pp~~~~~~~~~~~~~~aD~viiv~~~~~-~s~~~~~~~~~~l~~~--~~~~~gvV~N~~~~~~~~~~~~~ 203 (262)
T 2ph1_A 127 GELDHLLIDLPPGTGDAPLTVMQDAKPTGVVVVSTPQE-LTAVIVEKAINMAEET--NTSVLGLVENMSYFVCPNCGHKS 203 (262)
T ss_dssp CSCSEEEEECCSSSSSHHHHHHHHHCCSEEEEEECSSS-CCHHHHHHHHHHHHTT--TCCEEEEEETTCCEECTTTCCEE
T ss_pred cCCCEEEEECcCCCchHHHHHHhhccCCeEEEEecCcc-chHHHHHHHHHHHHhC--CCCEEEEEECCCccCCccccccc
Confidence 34667888998754321111112236899999998774 3555566666665543 56776 899998742 11
Q ss_pred cc--ChHHHHHHHHcCCcEEE
Q 029875 98 QV--KAKQVTFHRKKNLQYYE 116 (186)
Q Consensus 98 ~~--~~~~~~~~~~~~~~~~~ 116 (186)
.. ......+.+.++.+++.
T Consensus 204 ~~~~~~~~~~~~~~~g~~~~~ 224 (262)
T 2ph1_A 204 YIFGEGKGESLAKKYNIGFFT 224 (262)
T ss_dssp CTTCCCCHHHHHHHTTCSEEE
T ss_pred ccccccHHHHHHHHcCCCeEE
Confidence 11 11234566677877664
No 239
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=85.62 E-value=1.1 Score=34.04 Aligned_cols=68 Identities=10% Similarity=0.106 Sum_probs=43.4
Q ss_pred EEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhH---HHH-------------H---HHHHhh--cCC-C
Q 029875 26 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV---PTW-------------H---RDLCRV--CEN-I 83 (186)
Q Consensus 26 ~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i---~~~-------------~---~~~~~~--~~~-~ 83 (186)
.+.+.|+|+|+.. .......+..||.+|+++..+.. +...+ ..+ + +.+... .+. .
T Consensus 103 ~yD~viiD~p~~~--~~~~~~~l~~aD~viiv~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 179 (286)
T 2xj4_A 103 ECDFILIDTPGGD--SAITRMAHGRADLVVTPMNDSFV-DFDMLGTVDPVTLELTKPSLYSLTVWEGRKQRALSGQRQAM 179 (286)
T ss_dssp HCSEEEEECCSSC--CHHHHHHHHTCSEEEEEEESSHH-HHTTTEEECTTTCCEEEECHHHHHHHHHHHHHHHHCSSCCC
T ss_pred cCCEEEEcCCCCc--cHHHHHHHHHCCEEEEEEcCCcc-HHHHHHHHHHHhhhccccchhhhhhhcchhhhhhccCCccc
Confidence 3567788998764 34455677889999999988642 32221 112 3 333333 345 6
Q ss_pred CEEEEEeCCCCCC
Q 029875 84 PIVLCGNKVDVKN 96 (186)
Q Consensus 84 p~ilv~nK~Dl~~ 96 (186)
++.+|.|+++...
T Consensus 180 ~~~vV~N~~~~~~ 192 (286)
T 2xj4_A 180 DWVVLRNRLATTE 192 (286)
T ss_dssp EEEEEEECCTTCC
T ss_pred cEEEEEeeecCCC
Confidence 7889999998643
No 240
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=83.41 E-value=1.1 Score=34.19 Aligned_cols=83 Identities=10% Similarity=0.167 Sum_probs=47.6
Q ss_pred EEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHh----hcCCCCEE-EEEeCCCCCCcccC
Q 029875 26 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR----VCENIPIV-LCGNKVDVKNRQVK 100 (186)
Q Consensus 26 ~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~----~~~~~p~i-lv~nK~Dl~~~~~~ 100 (186)
.+.+.|+|||+.... .....+..||.+|+++..+. .+...+..+++.+.+ ...+.+++ +|.|+.|.......
T Consensus 154 ~yD~IiiD~pp~~~~--~~~~~l~~aD~viiv~~~~~-~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~n~~~~~~~~~~ 230 (298)
T 2oze_A 154 DYDLIIIDTVPTPSV--YTNNAIVASDYVMIPLQAEE-ESTNNIQNYISYLIDLQEQFNPGLDMIGFVPYLVDTDSATIK 230 (298)
T ss_dssp GCSEEEEEECSSCSH--HHHHHHHHCSEEEEEECGGG-CCHHHHHHHHHHHHHHHHHHCTTCEEEEEEEEESCTTCHHHH
T ss_pred CCCEEEEECCCCccH--HHHHHHHHCCeEEEEecCcH-HHHHHHHHHHHHHHHHHHHhCCCCeEEEEEEEEECCCcHHHH
Confidence 366778899875432 22334556999999998764 344444444444333 22466744 88999986432221
Q ss_pred hHHHHHHHHcC
Q 029875 101 AKQVTFHRKKN 111 (186)
Q Consensus 101 ~~~~~~~~~~~ 111 (186)
....++...++
T Consensus 231 ~~~~~~~~~~~ 241 (298)
T 2oze_A 231 SNLEELYKQHK 241 (298)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHhc
Confidence 22234445554
No 241
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=82.48 E-value=2.6 Score=32.94 Aligned_cols=92 Identities=13% Similarity=0.078 Sum_probs=51.0
Q ss_pred EEEEEEEeCCCccccCC-ccc-----------cccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCE-EEEEeCC
Q 029875 26 KIRFYCWDTAGQEKFGG-LRD-----------GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI-VLCGNKV 92 (186)
Q Consensus 26 ~~~l~l~Dt~G~~~~~~-~~~-----------~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~-ilv~nK~ 92 (186)
.+.+.|+||||...... +.. ..-..++.+++|+|++.. .+.+. .+.......++ -+|.||.
T Consensus 191 ~yD~VIIDTpg~l~~~~~l~~eL~~~~~vi~~~~p~~~d~vllVl~a~~~--~~~l~----~~~~~~~~~~i~GvVltk~ 264 (320)
T 1zu4_A 191 NYDLLLIDTAGRLQNKTNLMAELEKMNKIIQQVEKSAPHEVLLVIDATTG--QNGVI----QAEEFSKVADVSGIILTKM 264 (320)
T ss_dssp TCSEEEEECCCCGGGHHHHHHHHHHHHHHHHTTCTTCCSEEEEEEEGGGT--HHHHH----HHHHHTTTSCCCEEEEECG
T ss_pred CCCEEEEcCCCcccccHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCc--HHHHH----HHHHHhhcCCCcEEEEeCC
Confidence 45677889999654321 100 011247899999998842 22222 22233233333 4788999
Q ss_pred CCCCcccChHHHHHHHHcCCcEEEeccCCCCCchH
Q 029875 93 DVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEK 127 (186)
Q Consensus 93 Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 127 (186)
|...+ ......+....+.|+..++ .|+++++
T Consensus 265 d~~~~--~g~~~~~~~~~~~Pi~~i~--~Ge~~~d 295 (320)
T 1zu4_A 265 DSTSK--GGIGLAIKELLNIPIKMIG--VGEKVDD 295 (320)
T ss_dssp GGCSC--TTHHHHHHHHHCCCEEEEE--CSSSTTC
T ss_pred CCCCc--hhHHHHHHHHHCcCEEEEe--CCCCccc
Confidence 96432 1244566677788876654 3444443
No 242
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=81.70 E-value=4.9 Score=31.47 Aligned_cols=91 Identities=12% Similarity=0.019 Sum_probs=52.5
Q ss_pred EEEEeCCCccccCCccccc------cccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCcccChH
Q 029875 29 FYCWDTAGQEKFGGLRDGY------YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK 102 (186)
Q Consensus 29 l~l~Dt~G~~~~~~~~~~~------~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~ 102 (186)
+.+.||+|........-.. .-..|-.+++.|++... ++...+..+.+. .-.-+++.||.|...+ ...
T Consensus 214 ~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~---~~~~~~~~~~~~--~~it~iilTKlD~~a~--~G~ 286 (328)
T 3e70_C 214 VVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGN---AIVEQARQFNEA--VKIDGIILTKLDADAR--GGA 286 (328)
T ss_dssp EEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTT---HHHHHHHHHHHH--SCCCEEEEECGGGCSC--CHH
T ss_pred hhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHH---HHHHHHHHHHHh--cCCCEEEEeCcCCccc--hhH
Confidence 4467999975432211111 11368889999986543 233333333332 1234677899996322 233
Q ss_pred HHHHHHHcCCcEEEeccCCCCCchHH
Q 029875 103 QVTFHRKKNLQYYEISAKSNYNFEKP 128 (186)
Q Consensus 103 ~~~~~~~~~~~~~~~Sa~~~~gi~~l 128 (186)
....+...+.|+..++ +|++++++
T Consensus 287 ~l~~~~~~~~pi~~i~--~Ge~v~dl 310 (328)
T 3e70_C 287 ALSISYVIDAPILFVG--VGQGYDDL 310 (328)
T ss_dssp HHHHHHHHTCCEEEEE--CSSSTTCE
T ss_pred HHHHHHHHCCCEEEEe--CCCCcccc
Confidence 4566677788988877 67766543
No 243
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=81.26 E-value=9.8 Score=28.13 Aligned_cols=86 Identities=13% Similarity=0.129 Sum_probs=50.3
Q ss_pred EEEEEEEeCCCccccCCccc-cccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc--CCCCE-EEEEeCCCCCCcccCh
Q 029875 26 KIRFYCWDTAGQEKFGGLRD-GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPI-VLCGNKVDVKNRQVKA 101 (186)
Q Consensus 26 ~~~l~l~Dt~G~~~~~~~~~-~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~--~~~p~-ilv~nK~Dl~~~~~~~ 101 (186)
.+.+.|+||+|......+.. .....||.+|++...+. .+...+...++.+.... .+.++ -+|.|+.+... ..
T Consensus 115 ~yD~iiiD~~~~~~~~~~~~~~~~~~aD~viiv~~~~~-~s~~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~~~---~~ 190 (269)
T 1cp2_A 115 DLDYVFYDVLGDVVCGGFAMPIREGKAQEIYIVASGEM-MALYAANNISKGIQKYAKSGGVRLGGIICNSRKVAN---EY 190 (269)
T ss_dssp TCSEEEEEEECSSCSTTTTHHHHTTSCCEEEEEECSSH-HHHHHHHHHHHHHHHHBTTBBCEEEEEEEECCSSSC---CH
T ss_pred CCCEEEEeCCchhhhhhhhhhhhHhhCCEEEEeecCch-hhHHHHHHHHHHHHHHHhcCCCcEEEEEeecCCcch---hH
Confidence 36678889987543222211 11246999999998764 46666666666665543 24554 58899986321 12
Q ss_pred H-HHHHHHHcCCcEE
Q 029875 102 K-QVTFHRKKNLQYY 115 (186)
Q Consensus 102 ~-~~~~~~~~~~~~~ 115 (186)
. ...+.+.++.+++
T Consensus 191 ~~~~~l~~~~~~~v~ 205 (269)
T 1cp2_A 191 ELLDAFAKELGSQLI 205 (269)
T ss_dssp HHHHHHHHHHTCCEE
T ss_pred HHHHHHHHHcCCccc
Confidence 2 2345556676655
No 244
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=79.69 E-value=6.1 Score=32.22 Aligned_cols=84 Identities=14% Similarity=0.111 Sum_probs=46.2
Q ss_pred EEEEEEEeCCCccccCC-ccc-----cccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCC-EEEEEeCCCCCCcc
Q 029875 26 KIRFYCWDTAGQEKFGG-LRD-----GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKNRQ 98 (186)
Q Consensus 26 ~~~l~l~Dt~G~~~~~~-~~~-----~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~ 98 (186)
.+.+.|+||||...... +.. ..+..++.+++|+|+..... .......+.. ..+ .-+|.||.|...+.
T Consensus 183 ~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~---~~~~~~~f~~---~l~i~gvVlnK~D~~~~~ 256 (433)
T 2xxa_A 183 FYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQD---AANTAKAFNE---ALPLTGVVLTKVDGDARG 256 (433)
T ss_dssp TCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTT---HHHHHHHHHH---HSCCCCEEEECTTSSSCC
T ss_pred CCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHH---HHHHHHHHhc---cCCCeEEEEecCCCCccH
Confidence 35677889999654321 111 11336889999999975432 2222233322 344 34789999975322
Q ss_pred cChHHHHHHHHcCCcEEEe
Q 029875 99 VKAKQVTFHRKKNLQYYEI 117 (186)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~ 117 (186)
.....+....+.|+..+
T Consensus 257 --g~~l~i~~~~~~Pi~~i 273 (433)
T 2xxa_A 257 --GAALSIRHITGKPIKFL 273 (433)
T ss_dssp --THHHHHHHHHCCCEEEE
T ss_pred --HHHHHHHHHHCCCeEEE
Confidence 23345555566654433
No 245
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=79.41 E-value=12 Score=26.73 Aligned_cols=87 Identities=10% Similarity=0.025 Sum_probs=45.9
Q ss_pred EEEEEEEeCCCccccCC----ccccccccC-cEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEE-EEEeCCCCCCccc
Q 029875 26 KIRFYCWDTAGQEKFGG----LRDGYYIHG-QCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIV-LCGNKVDVKNRQV 99 (186)
Q Consensus 26 ~~~l~l~Dt~G~~~~~~----~~~~~~~~a-d~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~i-lv~nK~Dl~~~~~ 99 (186)
.+.+.|+|+||.-.... ......... ..+|+|..... .+...+...++.+.+ .+.+++ +|.|+.+.....
T Consensus 108 ~yD~viID~p~~l~~p~~~~~~~~~l~~~~~~~vi~v~~~~~-~~~~~~~~~i~~l~~--~~~~i~gvvlN~~~~~~~~- 183 (224)
T 1byi_A 108 QADWVLVEGAGGWFTPLSDTFTFADWVTQEQLPVILVVGVKL-GCINHAMLTAQVIQH--AGLTLAGWVANDVTPPGKR- 183 (224)
T ss_dssp TCSEEEEECSSSTTCEEETTEEHHHHHHHHTCCEEEEEECST-THHHHHHHHHHHHHH--TTCCEEEEEEECCSSCCTT-
T ss_pred hCCEEEEEcCCccccCCCcchhHHHHHHHhCCCEEEEecCCC-CcHHHHHHHHHHHHH--CCCcEEEEEEeCCCCchhh-
Confidence 35677889987543211 111112222 23777877743 455656555665543 356655 889999854221
Q ss_pred ChHH-HHHHHHcCCcEEE
Q 029875 100 KAKQ-VTFHRKKNLQYYE 116 (186)
Q Consensus 100 ~~~~-~~~~~~~~~~~~~ 116 (186)
..+. ..+.+.++.+++.
T Consensus 184 ~~~~~~~l~~~~~~~vl~ 201 (224)
T 1byi_A 184 HAEYMTTLTRMIPAPLLG 201 (224)
T ss_dssp HHHHHHHHHHHSSSCEEE
T ss_pred HHHHHHHHHHHcCCCEEE
Confidence 1222 2344456666654
No 246
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=78.91 E-value=3.1 Score=31.48 Aligned_cols=66 Identities=8% Similarity=0.024 Sum_probs=42.4
Q ss_pred EEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEE-EEEeCCCCC
Q 029875 26 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIV-LCGNKVDVK 95 (186)
Q Consensus 26 ~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~i-lv~nK~Dl~ 95 (186)
.+.+.|+|||+.... .........+|++|+|+..... +...+...++.+.+. +.+++ +|.|+.+..
T Consensus 191 ~yD~VIIDtpp~~~~-~d~~~l~~~aD~vilVv~~~~~-~~~~~~~~~~~l~~~--~~~~~GvVlN~~~~~ 257 (271)
T 3bfv_A 191 NYNFVIIDTPPVNTV-TDAQLFSKFTGNVVYVVNSENN-NKDEVKKGKELIEAT--GAKLLGVVLNRMPKD 257 (271)
T ss_dssp HCSEEEEECCCTTTC-SHHHHHHHHHCEEEEEEETTSC-CHHHHHHHHHHHHTT--TCEEEEEEEEEECC-
T ss_pred CCCEEEEeCCCCchH-HHHHHHHHHCCEEEEEEeCCCC-cHHHHHHHHHHHHhC--CCCEEEEEEeCCcCC
Confidence 356778899875432 1122345679999999988653 455555555555543 55666 889999854
No 247
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=76.77 E-value=4.1 Score=32.14 Aligned_cols=42 Identities=5% Similarity=0.097 Sum_probs=28.3
Q ss_pred EEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHH
Q 029875 26 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVP 70 (186)
Q Consensus 26 ~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~ 70 (186)
.+.+.|+|||..- .......+..||.+|+++..+. .++..+.
T Consensus 153 ~yD~VIID~pP~l--~~~~~~aL~~aD~viip~~~~~-~s~~~~~ 194 (361)
T 3pg5_A 153 RYDVIFFDVGPSL--GPFNRTVLLGCDAFVTPTATDL-FSFHAFG 194 (361)
T ss_dssp CCSEEEEECCSCC--SHHHHHHHTTCSEEEEEECCSH-HHHHHHH
T ss_pred CCCEEEEECCCCc--CHHHHHHHHHCCEEEEEecCCh-HHHHHHH
Confidence 5677888998643 3444556677999999998763 3444433
No 248
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=76.48 E-value=9.2 Score=31.10 Aligned_cols=102 Identities=16% Similarity=0.116 Sum_probs=54.5
Q ss_pred EEEEEEeCCCccccCC-ccc-----cccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCC-EEEEEeCCCCCCccc
Q 029875 27 IRFYCWDTAGQEKFGG-LRD-----GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKNRQV 99 (186)
Q Consensus 27 ~~l~l~Dt~G~~~~~~-~~~-----~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~ 99 (186)
+.+.|+||||.-.... +.. ...-.++.+++|+|+... .+.......+.. ..+ .-+|.||.|...+
T Consensus 181 ~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tg---q~av~~a~~f~~---~l~i~GVIlTKlD~~~~-- 252 (425)
T 2ffh_A 181 RDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTG---QEALSVARAFDE---KVGVTGLVLTKLDGDAR-- 252 (425)
T ss_dssp CSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGT---THHHHHHHHHHH---HTCCCEEEEESGGGCSS--
T ss_pred CCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccch---HHHHHHHHHHHh---cCCceEEEEeCcCCccc--
Confidence 4567889999654321 111 011248889999998643 222222333332 233 4578899996422
Q ss_pred ChHHHHHHHHcCCcEEEeccCCCCCchHH----HHHHHHHHhC
Q 029875 100 KAKQVTFHRKKNLQYYEISAKSNYNFEKP----FLYLARKLAG 138 (186)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l----~~~l~~~i~~ 138 (186)
...........+.|+..+.. |..++++ -+.++..+..
T Consensus 253 ~g~alsi~~~~g~PI~flg~--Ge~~~dl~~f~~~~~a~~ilg 293 (425)
T 2ffh_A 253 GGAALSARHVTGKPIYFAGV--SEKPEGLEPFYPERLAGRILG 293 (425)
T ss_dssp CHHHHHHHHHHCCCEEEEEC--SSSGGGEEECCHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCEEEEeC--CCChhhccccCHHHHHHHHhc
Confidence 12334556677888766653 3334433 2445555543
No 249
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=75.33 E-value=17 Score=27.30 Aligned_cols=87 Identities=13% Similarity=0.144 Sum_probs=48.4
Q ss_pred EEEEEEEeCCCccccCCcc-ccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc--CCCCE-EEEEeCCCCCCcccCh
Q 029875 26 KIRFYCWDTAGQEKFGGLR-DGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPI-VLCGNKVDVKNRQVKA 101 (186)
Q Consensus 26 ~~~l~l~Dt~G~~~~~~~~-~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~--~~~p~-ilv~nK~Dl~~~~~~~ 101 (186)
.+.+.|+||+|......+. ......||.+|++...+. .+...+...++.+.... .+.++ -+|.|+.+... ...
T Consensus 118 ~yD~ViID~~~~~~~~~~~~~~~~~~aD~viiv~~~~~-~s~~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~~~--~~~ 194 (289)
T 2afh_E 118 DLDFVFYDVLGDVVCGGFAMPIRENKAQEIYIVCSGEM-MAMYAANNISKGIVKYANSGSVRLGGLICNSRNTDR--EDE 194 (289)
T ss_dssp TCSEEEEEEECSSCCTTTTHHHHTTCCCEEEEEECSSH-HHHHHHHHHHHHHHHHHTTSCCEEEEEEEECCCCTT--HHH
T ss_pred CCCEEEEeCCCccccchhhhhhhhhhCCEEEEEecCCH-HHHHHHHHHHHHHHHHHhcCCCceEEEEEecCCchh--HHH
Confidence 4677888998753222221 111246999999988753 45555555555554432 24554 57889986321 111
Q ss_pred HHHHHHHHcCCcEE
Q 029875 102 KQVTFHRKKNLQYY 115 (186)
Q Consensus 102 ~~~~~~~~~~~~~~ 115 (186)
....+.+.++.+++
T Consensus 195 ~~~~l~~~~g~~~l 208 (289)
T 2afh_E 195 LIIALANKLGTQMI 208 (289)
T ss_dssp HHHHHHHHHTSCEE
T ss_pred HHHHHHHHcCcccc
Confidence 12344556666654
No 250
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=73.95 E-value=6 Score=30.21 Aligned_cols=66 Identities=12% Similarity=-0.123 Sum_probs=41.6
Q ss_pred EEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCC
Q 029875 27 IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK 95 (186)
Q Consensus 27 ~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~ 95 (186)
+.+.|+|||...... -.......||++|+|+..... +...+...++.+.+.. ...+-+|.|+.+..
T Consensus 202 yD~VIIDtpp~~~~~-da~~l~~~aD~vllVv~~~~~-~~~~~~~~~~~l~~~g-~~~~GvVlN~v~~~ 267 (286)
T 3la6_A 202 YDLVLIDTPPILAVT-DAAIVGRHVGTTLMVARYAVN-TLKEVETSLSRFEQNG-IPVKGVILNSIFRR 267 (286)
T ss_dssp CSEEEEECCCTTTCT-HHHHHTTTCSEEEEEEETTTS-BHHHHHHHHHHHHHTT-CCCCEEEEEEECCC
T ss_pred CCEEEEcCCCCcchH-HHHHHHHHCCeEEEEEeCCCC-cHHHHHHHHHHHHhCC-CCEEEEEEcCcccc
Confidence 557788998754321 123345679999999988753 4445555555555532 23355888999864
No 251
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=67.37 E-value=6.9 Score=30.05 Aligned_cols=85 Identities=11% Similarity=0.076 Sum_probs=46.4
Q ss_pred EEEEEEeCCCccccCC--ccc--cccc--cCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCcccC
Q 029875 27 IRFYCWDTAGQEKFGG--LRD--GYYI--HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK 100 (186)
Q Consensus 27 ~~l~l~Dt~G~~~~~~--~~~--~~~~--~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~ 100 (186)
..+.|+||+|...... +.. ..+. ..+.+++|+|++.. ...+..+...+.. -+ ..-+|.||.|...+ .
T Consensus 183 ~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~--~~~~~~~~~~~~~--l~-~~giVltk~D~~~~--~ 255 (296)
T 2px0_A 183 YDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAK--YEDMKHIVKRFSS--VP-VNQYIFTKIDETTS--L 255 (296)
T ss_dssp SSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBC--HHHHHHHTTTTSS--SC-CCEEEEECTTTCSC--C
T ss_pred CCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCC--HHHHHHHHHHHhc--CC-CCEEEEeCCCcccc--h
Confidence 4567889999764322 111 1222 36788999988743 2233333333221 11 23456799997532 2
Q ss_pred hHHHHHHHHcCCcEEEec
Q 029875 101 AKQVTFHRKKNLQYYEIS 118 (186)
Q Consensus 101 ~~~~~~~~~~~~~~~~~S 118 (186)
......+...+.|+..++
T Consensus 256 g~~~~~~~~~~~pi~~i~ 273 (296)
T 2px0_A 256 GSVFNILAESKIGVGFMT 273 (296)
T ss_dssp HHHHHHHHTCSCCCSEEC
T ss_pred hHHHHHHHHHCcCEEEEE
Confidence 244566667777765554
No 252
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=66.25 E-value=9.8 Score=29.11 Aligned_cols=66 Identities=14% Similarity=-0.049 Sum_probs=40.8
Q ss_pred EEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEE-EEEeCCCCC
Q 029875 26 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIV-LCGNKVDVK 95 (186)
Q Consensus 26 ~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~i-lv~nK~Dl~ 95 (186)
.+.+.|+|||+..... -.......+|++|+|...... +...+...++.+.+. +.+++ +|.|+.+..
T Consensus 213 ~yD~VIIDtpp~~~~~-d~~~l~~~ad~vilV~~~~~~-~~~~~~~~~~~l~~~--~~~~~GvVlN~~~~~ 279 (299)
T 3cio_A 213 HYDLVIVDTPPMLAVS-DAAVVGRSVGTSLLVARFGLN-TAKEVSLSMQRLEQA--GVNIKGAILNGVIKR 279 (299)
T ss_dssp HCSEEEEECCCTTTCT-HHHHHGGGCSEEEEEEETTTS-CTTHHHHHHHHHHHT--TCCCCCEEEEECCCC
T ss_pred CCCEEEEcCCCCchhH-HHHHHHHHCCEEEEEEcCCCC-hHHHHHHHHHHHHhC--CCCeEEEEEeCCccC
Confidence 3567788998754321 122334679999999987643 444455555555553 34433 778999864
No 253
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=65.76 E-value=11 Score=29.94 Aligned_cols=66 Identities=9% Similarity=-0.084 Sum_probs=37.7
Q ss_pred EEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChh------hHHhHHHHHHHHHhhcCCCC---EEEEEeCCC
Q 029875 26 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARL------TYKNVPTWHRDLCRVCENIP---IVLCGNKVD 93 (186)
Q Consensus 26 ~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~------s~~~i~~~~~~~~~~~~~~p---~ilv~nK~D 93 (186)
.+.+.|+|+|..-. ......+..||.+|++...+..+ .+..+...++.+.+...+.+ ++.+.|+.+
T Consensus 247 ~yD~VIID~pP~~~--~~~~~al~~aD~vliv~~p~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~l~giv~vl~~~~ 321 (403)
T 3ez9_A 247 DYDFIFIDTGPHLD--PFLLNGLAASDLLLTPTPPAQVDFHSTLKYLTRLPEMLEQLEEEGVEPRLSASIGFMSKMT 321 (403)
T ss_dssp GCSEEEEEECSSCS--HHHHHHHHHCSEEEEEECSSHHHHHHHHHHHHTHHHHHHHHHHTTCCCCCCEEEEEECC--
T ss_pred cCCEEEEECCCCcc--HHHHHHHHHCCEEEEEecCchhhHHHHHHHHHHHHHHHHHHHhcCCCCceeEEEEEEeccC
Confidence 46678889976543 34455667899999999876432 11233334444444322333 456788887
No 254
>3do6_A Formate--tetrahydrofolate ligase; TM1766, putative formyltetrahydrofolate synthetase, structural genomics; HET: MSE; 1.85A {Thermotoga maritima} SCOP: c.37.1.0
Probab=65.30 E-value=30 Score=28.82 Aligned_cols=65 Identities=15% Similarity=0.054 Sum_probs=44.5
Q ss_pred HHHHHHHhhcCCCCEEEEEeCCCCCCcccChHHHHHHHHcCCcEEEec--cCCCCCchHHHHHHHHHHh
Q 029875 71 TWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEIS--AKSNYNFEKPFLYLARKLA 137 (186)
Q Consensus 71 ~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~S--a~~~~gi~~l~~~l~~~i~ 137 (186)
+-++.+++ -+.|++|.+|+...-.........++|.+.++.+..+. ++=|.|-.++-+.+++.+.
T Consensus 351 kHIen~~~--fGvpvVVaiN~F~tDT~aEi~~v~~~~~~~G~~~~~s~~wa~GG~G~~~LA~~Vv~~~e 417 (543)
T 3do6_A 351 VHVENLRK--FNLPVVVALNRFSTDTEKEIAYVVKECEKLGVRVAVSEVFKKGSEGGVELAKAVAEAAK 417 (543)
T ss_dssp HHHHHHHH--TTCCEEEEEECCTTCCHHHHHHHHHHHHTTTCEEEEECHHHHGGGGSHHHHHHHHHHCC
T ss_pred HHHHHHHH--cCCCeEEEEeCCCCCCHHHHHHHHHHHHHcCCCEEEechhhccchhHHHHHHHHHHHhc
Confidence 33444444 38999999999864322222334578888898776554 4677888899888888775
No 255
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=61.13 E-value=38 Score=25.71 Aligned_cols=86 Identities=13% Similarity=0.103 Sum_probs=47.3
Q ss_pred EEEEEEEeCCCccccCCc-ccc-----ccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCC-EEEEEeCCCCCCcc
Q 029875 26 KIRFYCWDTAGQEKFGGL-RDG-----YYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKNRQ 98 (186)
Q Consensus 26 ~~~l~l~Dt~G~~~~~~~-~~~-----~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~ 98 (186)
.+.+.|+||||.-..... ... ..-.++.+++|+|+... .+.+ ...+.+.. ..+ .-+|.||.|...+
T Consensus 180 ~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~~~~~--~~~~-~~~~~~~~---~~~i~givlnk~d~~~~- 252 (295)
T 1ls1_A 180 ARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTG--QEAL-SVARAFDE---KVGVTGLVLTKLDGDAR- 252 (295)
T ss_dssp TCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGT--HHHH-HHHHHHHH---HTCCCEEEEECGGGCSS-
T ss_pred CCCEEEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEeCCCc--HHHH-HHHHHHhh---cCCCCEEEEECCCCCcc-
Confidence 356778899986443211 111 01147888999998642 1111 12222222 233 4478899996432
Q ss_pred cChHHHHHHHHcCCcEEEecc
Q 029875 99 VKAKQVTFHRKKNLQYYEISA 119 (186)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~Sa 119 (186)
...........+.|+..++.
T Consensus 253 -~g~~~~~~~~~~~pi~~i~~ 272 (295)
T 1ls1_A 253 -GGAALSARHVTGKPIYFAGV 272 (295)
T ss_dssp -CHHHHHHHHHHCCCEEEEC-
T ss_pred -HHHHHHHHHHHCcCEEEEeC
Confidence 22345666777888877664
No 256
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=58.83 E-value=15 Score=27.69 Aligned_cols=45 Identities=16% Similarity=0.222 Sum_probs=28.5
Q ss_pred cccCcEEEEEEeCC-ChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCC
Q 029875 48 YIHGQCAIIMFDVT-ARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN 96 (186)
Q Consensus 48 ~~~ad~vilv~D~~-~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 96 (186)
+..|+++++++|.. ..-+-.+ ...+..+.+ ..++++|.+|+|...
T Consensus 109 iaRal~~lllldep~~gL~~lD-~~~l~~L~~---~~~vI~Vi~K~D~lt 154 (270)
T 3sop_A 109 DTRVHCCLYFISPTGHSLRPLD-LEFMKHLSK---VVNIIPVIAKADTMT 154 (270)
T ss_dssp CCSCCEEEEEECCCSSSCCHHH-HHHHHHHHT---TSEEEEEETTGGGSC
T ss_pred hheeeeeeEEEecCCCcCCHHH-HHHHHHHHh---cCcEEEEEeccccCC
Confidence 44579999999965 2222222 223333333 389999999999864
No 257
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=57.50 E-value=3.7 Score=33.69 Aligned_cols=52 Identities=12% Similarity=0.011 Sum_probs=35.9
Q ss_pred EEEEEEeCCCccc--cCCcc--------ccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhh
Q 029875 27 IRFYCWDTAGQEK--FGGLR--------DGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV 79 (186)
Q Consensus 27 ~~l~l~Dt~G~~~--~~~~~--------~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~ 79 (186)
....+||+.|.+. +...+ ..++..+.+.++|+|.++. +++....|...+.+.
T Consensus 87 ~~~~ifd~~g~~~~r~re~~~~~~l~~~~~~l~~~~G~~vV~D~tn~-~~~~R~~~~~~~~~~ 148 (469)
T 1bif_A 87 KSFEFFLPDNEEGLKIRKQCALAALNDVRKFLSEEGGHVAVFDATNT-TRERRAMIFNFGEQN 148 (469)
T ss_dssp CCGGGGCTTCHHHHHHHHHHHHHHHHHHHHHHHTTCCSEEEEESCCC-SHHHHHHHHHHHHHH
T ss_pred CcccccCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEeCCCC-CHHHHHHHHHHHHhc
Confidence 3456899998733 23333 5566678899999999987 566666777766654
No 258
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=55.43 E-value=7.6 Score=33.06 Aligned_cols=68 Identities=10% Similarity=0.118 Sum_probs=34.9
Q ss_pred EEEEEeCCCccc-------------cCCccccccccC-cEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCC
Q 029875 28 RFYCWDTAGQEK-------------FGGLRDGYYIHG-QCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVD 93 (186)
Q Consensus 28 ~l~l~Dt~G~~~-------------~~~~~~~~~~~a-d~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~D 93 (186)
.+.|.|.||... ...+...++... .+++++.+.+....-..+..+...+.. .+.+.|+|.||.|
T Consensus 148 ~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~--~g~rtI~VlTK~D 225 (608)
T 3szr_A 148 DLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDP--EGDRTIGILTKPD 225 (608)
T ss_dssp CEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCS--SCCSEEEEEECGG
T ss_pred ceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhh--cCCceEEEecchh
Confidence 477889997332 122334445444 444444443322121122233333322 3679999999999
Q ss_pred CCCc
Q 029875 94 VKNR 97 (186)
Q Consensus 94 l~~~ 97 (186)
+...
T Consensus 226 lv~~ 229 (608)
T 3szr_A 226 LVDK 229 (608)
T ss_dssp GSSS
T ss_pred hcCc
Confidence 8753
No 259
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=54.14 E-value=71 Score=24.44 Aligned_cols=86 Identities=14% Similarity=0.060 Sum_probs=46.5
Q ss_pred EEEEEEeCCCccccCC-c----------ccc-ccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCC
Q 029875 27 IRFYCWDTAGQEKFGG-L----------RDG-YYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDV 94 (186)
Q Consensus 27 ~~l~l~Dt~G~~~~~~-~----------~~~-~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl 94 (186)
+.+.|.||||...... + ... .-...+.+++|+|++... +.+.. ...+.+. .+ ..-+|.||.|.
T Consensus 187 ~dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~~--~~l~~-a~~~~~~-~~-i~gvVlTk~D~ 261 (306)
T 1vma_A 187 KDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQ--NGLVQ-AKIFKEA-VN-VTGIILTKLDG 261 (306)
T ss_dssp CSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGHH--HHHHH-HHHHHHH-SC-CCEEEEECGGG
T ss_pred CCEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCCH--HHHHH-HHHHHhc-CC-CCEEEEeCCCC
Confidence 3466789999532111 0 000 112478899999997432 22222 2223322 12 23466799996
Q ss_pred CCcccChHHHHHHHHcCCcEEEecc
Q 029875 95 KNRQVKAKQVTFHRKKNLQYYEISA 119 (186)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~Sa 119 (186)
..+ ...........+.|+.+++.
T Consensus 262 ~~~--gG~~l~~~~~~~~Pi~~i~~ 284 (306)
T 1vma_A 262 TAK--GGITLAIARELGIPIKFIGV 284 (306)
T ss_dssp CSC--TTHHHHHHHHHCCCEEEEEC
T ss_pred ccc--hHHHHHHHHHHCCCEEEEeC
Confidence 422 22355677788888777654
No 260
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=53.72 E-value=29 Score=27.68 Aligned_cols=51 Identities=16% Similarity=0.256 Sum_probs=36.6
Q ss_pred CCCEEEEEeCCCCCCcccChHHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHh
Q 029875 82 NIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLA 137 (186)
Q Consensus 82 ~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 137 (186)
..|++++.||+|.... +...... ....++.+|+..+.|++.+...+.+.+.
T Consensus 249 ~~p~i~v~nKid~~~~----eele~l~-~~~~~~~is~~~e~gLd~Li~~~y~~L~ 299 (376)
T 4a9a_A 249 YMPAIYVLNKIDSLSI----EELELLY-RIPNAVPISSGQDWNLDELLQVMWDRLN 299 (376)
T ss_dssp EECEEEEEECGGGSCH----HHHHHHT-TSTTEEECCTTTCTTHHHHHHHHHHHHC
T ss_pred ccceEEEEecccccCH----HHHHHHh-cccchhhhhhhhcccchhHHHHHHHHcC
Confidence 5799999999996431 2121111 1235889999999999999999888774
No 261
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=52.27 E-value=23 Score=29.54 Aligned_cols=91 Identities=11% Similarity=0.026 Sum_probs=47.2
Q ss_pred EEEEEeCCCccccCC-----cc------ccc-cccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCC
Q 029875 28 RFYCWDTAGQEKFGG-----LR------DGY-YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK 95 (186)
Q Consensus 28 ~l~l~Dt~G~~~~~~-----~~------~~~-~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~ 95 (186)
.+.|+||+|...... +. +.. ....+-++||.|++-..... ..+..+.+.. + .-.+|.||.|-.
T Consensus 377 DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq~al---~~ak~f~~~~-~-itgvIlTKLD~t 451 (503)
T 2yhs_A 377 DVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAV---SQAKLFHEAV-G-LTGITLTKLDGT 451 (503)
T ss_dssp SEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTHHHH---HHHHHHHHHT-C-CSEEEEECGGGC
T ss_pred CEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccHHHH---HHHHHHHhhc-C-CCEEEEEcCCCc
Confidence 456789999743211 10 001 11256789999987543211 2223333321 2 234678999953
Q ss_pred CcccChHHHHHHHHcCCcEEEeccCCCCCchH
Q 029875 96 NRQVKAKQVTFHRKKNLQYYEISAKSNYNFEK 127 (186)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 127 (186)
. .......++..++.++.++. +|.++++
T Consensus 452 a--kgG~~lsi~~~~~~PI~fig--~Ge~vdD 479 (503)
T 2yhs_A 452 A--KGGVIFSVADQFGIPIRYIG--VGERIED 479 (503)
T ss_dssp S--CCTHHHHHHHHHCCCEEEEE--CSSSGGG
T ss_pred c--cccHHHHHHHHHCCCEEEEe--cCCChhh
Confidence 1 12234566677788876644 3444443
No 262
>3pzx_A Formate--tetrahydrofolate ligase; HET: TOE; 2.20A {Moorella thermoacetica} SCOP: c.37.1.10 PDB: 1fp7_A 1fpm_A* 3qb6_A* 3qus_A* 3rbo_A* 3sin_A* 1eg7_A
Probab=49.58 E-value=17 Score=30.43 Aligned_cols=58 Identities=12% Similarity=-0.055 Sum_probs=39.4
Q ss_pred CCCCEEEEEeCCCCCCcccChHHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhC
Q 029875 81 ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG 138 (186)
Q Consensus 81 ~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 138 (186)
-+.|++|.+|+...-.........++|.+.++.+..+=++=|.|-.++-+.+++.+.+
T Consensus 373 fGvpvVVaiN~F~tDT~aEi~~v~~~~~~~G~~~~~~wa~GG~G~~~LA~~Vv~~~~~ 430 (557)
T 3pzx_A 373 FGVPAVVAINAFPTDTEAELNLLYELCAKAGAEVALSWAKGGEGGLELARKVLQTLES 430 (557)
T ss_dssp TTCCEEEEEECCTTCCHHHHHHHHHHCCSSEEEEECHHHHGGGGGHHHHHHHHHHHHH
T ss_pred cCCCeEEEEeCCCCCCHHHHHHHHHHHHHcCCCEEEEecccchhHHHHHHHHHHHHhc
Confidence 3899999999986422111122335666666665555566778899999999988865
No 263
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=49.18 E-value=81 Score=24.07 Aligned_cols=83 Identities=10% Similarity=0.023 Sum_probs=46.0
Q ss_pred EEEEeCCCccccCC------------ccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCC
Q 029875 29 FYCWDTAGQEKFGG------------LRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN 96 (186)
Q Consensus 29 l~l~Dt~G~~~~~~------------~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 96 (186)
+.+.||+|...... +.+......+.++++.|++..... ...+..+.+.. + ..+++.||.|...
T Consensus 187 ~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~~~~---~~~~~~~~~~~-~-~t~iivTh~d~~a 261 (304)
T 1rj9_A 187 LLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNG---LEQAKKFHEAV-G-LTGVIVTKLDGTA 261 (304)
T ss_dssp EEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHH---HHHHHHHHHHH-C-CSEEEEECTTSSC
T ss_pred EEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHHHHH---HHHHHHHHHHc-C-CcEEEEECCcccc
Confidence 45779999643211 111223457788899998765432 22233333221 2 3567789998642
Q ss_pred cccChHHHHHHHHcCCcEEEec
Q 029875 97 RQVKAKQVTFHRKKNLQYYEIS 118 (186)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~S 118 (186)
+ ...........+.|+..++
T Consensus 262 ~--gg~~l~i~~~~~~pi~~ig 281 (304)
T 1rj9_A 262 K--GGVLIPIVRTLKVPIKFVG 281 (304)
T ss_dssp C--CTTHHHHHHHHCCCEEEEE
T ss_pred c--ccHHHHHHHHHCCCeEEEe
Confidence 2 2234456667788876665
No 264
>4hs4_A Chromate reductase; triple-layered, A/B/A structure, NAD(P)H-dependent FMN reduc oxidoreductase; HET: FMN; 2.10A {Gluconacetobacter hansenii} PDB: 3s2y_A* 4h6p_A*
Probab=48.62 E-value=17 Score=26.01 Aligned_cols=46 Identities=11% Similarity=-0.022 Sum_probs=31.7
Q ss_pred cccccCcEEEEEEeCCChhhHHhHHHHHHHHHh----hcCCCCEEEEEeC
Q 029875 46 GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR----VCENIPIVLCGNK 91 (186)
Q Consensus 46 ~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~----~~~~~p~ilv~nK 91 (186)
..+..||++|++....+..---.++.|+..+.. ...++|+.++++-
T Consensus 69 ~~i~~AD~iVi~tP~Y~~s~p~~LK~~iD~~~~~~~~~l~gK~v~~v~ts 118 (199)
T 4hs4_A 69 QQIATADAVVIVTPEYNYSVPGVLKNAIDWLSRVSPQPLAGKPVALVTAS 118 (199)
T ss_dssp HHHHHSSEEEEEECCBTTBCCHHHHHHHHHHTTSSSCTTTTCEEEEEEEC
T ss_pred HHHHhCCEEEEEcCccCCCcCHHHHHHHHHhcccCCcccCCCEEEEEEeC
Confidence 346789999999988775422245667766654 3357888888875
No 265
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=47.94 E-value=19 Score=27.97 Aligned_cols=52 Identities=8% Similarity=0.122 Sum_probs=40.8
Q ss_pred CCCCEEEEEeCCCCCCcccChHHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHh
Q 029875 81 ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLA 137 (186)
Q Consensus 81 ~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 137 (186)
...|+||+ +|-+.+ .++..+.+++.+++++.++..+...+..+..++...+.
T Consensus 79 ~~~P~IIl-trg~~~----peelie~A~~~~IPVL~T~~~ts~~~~~l~~~l~~~~~ 130 (314)
T 1ko7_A 79 PETPAIIV-TRDLEP----PEELIEAAKEHETPLITSKIATTQLMSRLTTFLEHELA 130 (314)
T ss_dssp TTCCCEEE-CTTCCC----CHHHHHHHHHTTCCEEECCSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCEEEE-eCCCCC----CHHHHHHHHHCCCeEEEECCchhHHHHHHHHHHHHhhc
Confidence 36777765 666653 55677889999999999999999999988888877654
No 266
>1t0i_A YLR011WP; FMN binding protein, flavodoxin, azoreductase, oxidoreductase; HET: FMN; 2.00A {Saccharomyces cerevisiae} SCOP: c.23.5.4
Probab=45.10 E-value=28 Score=24.19 Aligned_cols=45 Identities=4% Similarity=-0.144 Sum_probs=30.8
Q ss_pred cccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEe
Q 029875 46 GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGN 90 (186)
Q Consensus 46 ~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~n 90 (186)
..+..||++||+.......---.++.|+..+.....++|++++.+
T Consensus 80 ~~l~~aD~iI~~sP~y~~~~p~~lK~~iD~~~~~l~gK~~~~~~~ 124 (191)
T 1t0i_A 80 RIVNALDIIVFVTPQYNWGYPAALKNAIDRLYHEWHGKPALVVSY 124 (191)
T ss_dssp HHHHTCSEEEEEEECBTTBCCHHHHHHHHTCSTTTTTCEEEEEEE
T ss_pred HHHHhCCEEEEEeceECCCCCHHHHHHHHHHHhhcCCCEEEEEEe
Confidence 346789999999998775422345667766654445788887765
No 267
>2fz5_A Flavodoxin; alpha/beta doubly-wound topology, non-covalently bound FMN, electron transport; HET: FNR; NMR {Megasphaera elsdenii} SCOP: c.23.5.1
Probab=43.06 E-value=24 Score=22.79 Aligned_cols=68 Identities=7% Similarity=-0.050 Sum_probs=39.1
Q ss_pred ccccCcEEEEEEeCCChhhHHh--HHHHHHHHHhhcCCCCEEEEEeCCCCCCcccChHHHHHHHHcCCcEE
Q 029875 47 YYIHGQCAIIMFDVTARLTYKN--VPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYY 115 (186)
Q Consensus 47 ~~~~ad~vilv~D~~~~~s~~~--i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 115 (186)
.+..+|++|++.......-.-. +..+++.+.....++|+.++++--.- ...........+...+..++
T Consensus 43 ~l~~~d~vi~g~p~y~~~~~~~~~~~~fl~~l~~~l~~k~~~~~~t~g~~-~~~~~~~l~~~l~~~g~~~~ 112 (137)
T 2fz5_A 43 DVASKDVILLGCPAMGSEELEDSVVEPFFTDLAPKLKGKKVGLFGSYGWG-SGEWMDAWKQRTEDTGATVI 112 (137)
T ss_dssp HHHTCSEEEEECCCBTTTBCCHHHHHHHHHHHGGGCSSCEEEEEEEESSC-CSHHHHHHHHHHHHTTCEEE
T ss_pred HHhcCCEEEEEccccCCCCCCHHHHHHHHHHhhhhcCCCEEEEEEecCCC-CchHHHHHHHHHHHCCCEEc
Confidence 3678999999988754322122 55666666544567899988874321 11111223345555676554
No 268
>3svl_A Protein YIEF; E. coli CHRR enzyme, chromate bioremediation, tetramer role, mutant enzymes, oxidoreductase; HET: FMN; 2.20A {Escherichia coli}
Probab=38.45 E-value=35 Score=24.14 Aligned_cols=46 Identities=9% Similarity=-0.026 Sum_probs=30.0
Q ss_pred cccccCcEEEEEEeCCChhhHHhHHHHHHHHHh----hcCCCCEEEEEeC
Q 029875 46 GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR----VCENIPIVLCGNK 91 (186)
Q Consensus 46 ~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~----~~~~~p~ilv~nK 91 (186)
..+..||++|++....+..---.++.|+..+.. ...++|+.++++-
T Consensus 68 ~~i~~AD~iv~~sP~y~~~~~~~lK~~iD~~~~~~~~~~~gK~~~~~~~s 117 (193)
T 3svl_A 68 EQIRQADGVVIVTPEYNYSVPGGLKNAIDWLSRLPDQPLAGKPVLIQTSS 117 (193)
T ss_dssp HHHHHSSEEEEEECCBTTBCCHHHHHHHHHHHTSTTCTTTTCEEEEEEEC
T ss_pred HHHHHCCEEEEEecccCCCCCHHHHHHHHHHhhcCccccCCCeEEEEEeC
Confidence 446689999999988765422334556665544 2357888888763
No 269
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=38.18 E-value=37 Score=26.82 Aligned_cols=36 Identities=6% Similarity=-0.004 Sum_probs=25.4
Q ss_pred EEEEEEEeCCCccccCCccccccccCcEEEEEEeCCCh
Q 029875 26 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTAR 63 (186)
Q Consensus 26 ~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~ 63 (186)
.+.+.|+|||..-. ......+..||.+|++...+..
T Consensus 244 ~yD~ViiD~pp~~~--~~~~~~l~~aD~vliv~~p~~~ 279 (398)
T 3ez2_A 244 DYDFILVDSGPHLD--AFLKNALASANILFTPLPPATV 279 (398)
T ss_dssp TCSEEEEEECSCCS--HHHHHHHHHCSEEEEEECCSHH
T ss_pred cCCEEEEeCCCCcc--HHHHHHHHHCCEEEEEecCchh
Confidence 35678889976542 2344566789999999988643
No 270
>1rtt_A Conserved hypothetical protein; protein structure initiative, SAD with sulfur, putative REDU PSI; 1.28A {Pseudomonas aeruginosa} SCOP: c.23.5.4 PDB: 1x77_A*
Probab=37.13 E-value=16 Score=25.62 Aligned_cols=45 Identities=7% Similarity=-0.103 Sum_probs=28.6
Q ss_pred ccccCcEEEEEEeCCChhhHHhHHHHHHHHHhh----cCCCCEEEEEeC
Q 029875 47 YYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV----CENIPIVLCGNK 91 (186)
Q Consensus 47 ~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~----~~~~p~ilv~nK 91 (186)
.+..||++||+.......---.++.|+..+... ..++|+.++++-
T Consensus 69 ~l~~aD~ii~~sP~y~~~~p~~lK~~iD~~~~~~~~~l~gK~~~~~~t~ 117 (193)
T 1rtt_A 69 QIRAADALLFATPEYNYSMAGVLKNAIDWASRPPEQPFSGKPAAILGAS 117 (193)
T ss_dssp HHHHCSEEEEECCEETTEECHHHHHHHHHHTCSSSCTTTTCEEEEEEEC
T ss_pred HHHhCCEEEEEccccccCcCHHHHHHHHHhccccCcccCCCeEEEEEeC
Confidence 456788888887776543222456677766542 346777777765
No 271
>2ark_A Flavodoxin; FMN, structural genomics, PSI, structure initiative, midwest center for structural genomic electron transport; 2.40A {Aquifex aeolicus} SCOP: c.23.5.8
Probab=34.82 E-value=37 Score=23.60 Aligned_cols=47 Identities=4% Similarity=-0.084 Sum_probs=32.9
Q ss_pred cccccCcEEEEEEeCCChhhHHhHHHHHHHHHh----hcCCCCEEEEEeCC
Q 029875 46 GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR----VCENIPIVLCGNKV 92 (186)
Q Consensus 46 ~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~----~~~~~p~ilv~nK~ 92 (186)
..+..+|++|+........-...+..|+..+.. ...++|+.++++--
T Consensus 48 ~~l~~aD~ii~gsP~y~g~~~~~lk~fld~~~~~~~~~l~gk~~~~~~t~g 98 (188)
T 2ark_A 48 EDVLWADGLAVGSPTNMGLVSWKMKRFFDDVLGDLWGEIDGKIACAFSSSG 98 (188)
T ss_dssp HHHHHCSEEEEEEECBTTBCCHHHHHHHHHTGGGTTTSCTTCEEEEEEEES
T ss_pred HHHHhCCEEEEEeCccCCcCCHHHHHHHHHHhhhhHHHhCCCeEEEEEECC
Confidence 346689999999988765433456777777654 23578888888853
No 272
>3fvw_A Putative NAD(P)H-dependent FMN reductase; Q8DWD8_strmu, SMR99, NESG, structural genomics, PSI-2, protein structure initiative; 2.30A {Streptococcus mutans}
Probab=34.72 E-value=78 Score=22.11 Aligned_cols=68 Identities=10% Similarity=-0.039 Sum_probs=39.9
Q ss_pred cccccCcEEEEEEeCCChhhHHhHHHHHHHHHh-----------hcCCCCEEEEEeCCCCCCcccChHHHHHHHHcCCc
Q 029875 46 GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-----------VCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQ 113 (186)
Q Consensus 46 ~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~-----------~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~ 113 (186)
..+..||++|++....+..---.++.|+..+.. ...++|++++++--..................++.
T Consensus 63 ~~i~~AD~iV~~sP~y~~~~p~~lK~~iD~~~~~~~~~~~~g~~~l~gK~~~i~~t~gg~g~~~~~~~l~~~l~~~G~~ 141 (192)
T 3fvw_A 63 EEVQEADAIWIFSPVYNYAIPGPVKNLLDWLSRSLDLSDPTGPSVLQDKIVTVSSVANGASPEEVFEDYRSLLPFIRMH 141 (192)
T ss_dssp HHHHHCSEEEEECCCBTTBCCHHHHHHHHHHTSCSCSSCTTSCCTTTTCEEEEEEESCCC---CCSHHHHHHHHHTTCE
T ss_pred HHHHhCCEEEEECcccccCCCHHHHHHHHHhhccccccCCCCCccCCCCEEEEEEeCCCcchhHHHHHHHHHHHHcCCe
Confidence 456789999999988765433346677777764 23567888777654422112222334455555654
No 273
>1rli_A Trp repressor binding protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.80A {Bacillus subtilis} SCOP: c.23.5.6
Probab=34.64 E-value=31 Score=23.64 Aligned_cols=44 Identities=2% Similarity=-0.158 Sum_probs=29.1
Q ss_pred ccccCcEEEEEEeCCChhhHHhHHHHHHHHHh------------hcCCCCEEEEEe
Q 029875 47 YYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR------------VCENIPIVLCGN 90 (186)
Q Consensus 47 ~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~------------~~~~~p~ilv~n 90 (186)
.+..||++||++......---.++.|+..+.. ...+++++++++
T Consensus 68 ~l~~aD~ii~~~P~y~~~~p~~lK~~iD~~~~~~~~~~~~~~~~~l~~K~~~~i~t 123 (184)
T 1rli_A 68 RILQCHILIFATPIYWFGMSGTLKLFIDRWSQTLRDPRFPDFKQQMSVKQAYVIAV 123 (184)
T ss_dssp HHHTCSEEEEEEECBTTBCCHHHHHHHHTHHHHTTCTTSTTHHHHHHTSEEEEEEE
T ss_pred HHHhCCEEEEEeCccccCCcHHHHHHHHHhHHhccCccccccccccCCCeEEEEEe
Confidence 46789999999998765422345666666532 123677777777
No 274
>3r6w_A FMN-dependent NADH-azoreductase 1; nitrofurazone, P. aeruginosa, nitroreductase, flavodoxin, oxidoreductase; HET: FMN NFZ; 2.08A {Pseudomonas aeruginosa} PDB: 3lt5_A* 2v9c_A* 3keg_A*
Probab=34.35 E-value=32 Score=24.48 Aligned_cols=46 Identities=7% Similarity=0.108 Sum_probs=31.9
Q ss_pred ccccCcEEEEEEeCCChhhHHhHHHHHHHHHh------------------hcCCCCEEEEEeCC
Q 029875 47 YYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR------------------VCENIPIVLCGNKV 92 (186)
Q Consensus 47 ~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~------------------~~~~~p~ilv~nK~ 92 (186)
.+..||++|+.+-..+..---.++.|+..+.. ...+++++++.+--
T Consensus 84 ~l~~AD~iV~~~P~y~~~~pa~lK~~iD~~~~~g~~f~~~~~~g~~~~~~~l~gK~~~~i~t~g 147 (212)
T 3r6w_A 84 ELFDSDLLVISTPMYNFSVPSGLKAWIDQIVRLGVTFDFVLDNGVAQYRPLLRGKRALIVTSRG 147 (212)
T ss_dssp HHHHCSEEEEEEECBTTBCCHHHHHHHHHHCCBTTTEEEEECC-CEEEEECCCSCEEEEEEECS
T ss_pred HHHhCCEEEEEcCcccccCCHHHHHHHHHHhhCCceeecccCCCCccccccCCCCEEEEEEecC
Confidence 36789999999998775433356788888732 23467777776644
No 275
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=34.15 E-value=18 Score=28.43 Aligned_cols=64 Identities=11% Similarity=-0.121 Sum_probs=36.9
Q ss_pred EEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCC
Q 029875 26 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKV 92 (186)
Q Consensus 26 ~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~ 92 (186)
.+.+.++|||... .......+..||.+|+|...+. .+...+..+...+.......++-++.|..
T Consensus 259 ~yD~VIID~p~~~--~~~~~~~l~~aD~vivv~~~~~-~s~~~l~~~~~~l~~l~~~~~~~vv~N~~ 322 (373)
T 3fkq_A 259 NYDEIIVDLPFSL--EIEKLKLLSKAWRIIVVNDGSQ-LSNYKFMRAYESVVLLEQNDDINIIRNMN 322 (373)
T ss_dssp CCSEEEEECCCCC--CHHHHHHHTTCSEEEEEECCCH-HHHHHHHHHHHHHHHHTTSTTCCCGGGEE
T ss_pred CCCEEEEeCCCCC--CHHHHHHHHHCCEEEEEecCCc-hHHHHHHHHHHHHHHhcccCCcEEEehhH
Confidence 4567888997432 2234556778999999987764 34444445444444443334443444433
No 276
>2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A
Probab=33.39 E-value=49 Score=25.34 Aligned_cols=46 Identities=9% Similarity=0.146 Sum_probs=35.1
Q ss_pred ccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEE----eCCCC
Q 029875 49 IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCG----NKVDV 94 (186)
Q Consensus 49 ~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~----nK~Dl 94 (186)
.+||+++++-....+.+-+.+..+++.+-...++.|+++-- +..++
T Consensus 105 ~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~~lPiilYn~P~~tg~~l 154 (303)
T 2wkj_A 105 YGFDAVSAVTPFYYPFSFEEHCDHYRAIIDSADGLPMVVYNIPALSGVKL 154 (303)
T ss_dssp HTCSEEEEECCCSSCCCHHHHHHHHHHHHHHHTTCCEEEEECHHHHCCCC
T ss_pred CCCCEEEecCCCCCCCCHHHHHHHHHHHHHhCCCCCEEEEeCccccCCCC
Confidence 37999999988777777788888888887765458988765 35554
No 277
>3uc9_A Increased recombination centers protein 6; rossmann-fold, clathrin accessory factor; 1.80A {Saccharomyces cerevisiae}
Probab=33.12 E-value=10 Score=28.25 Aligned_cols=83 Identities=7% Similarity=0.037 Sum_probs=37.5
Q ss_pred cEEEEEEeCCChhhHHhHHHHHHHHHhhc-CCCCEEEEEeCCCCCCcccChHHH---HHHHHcCCcEEEeccC-------
Q 029875 52 QCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQVKAKQV---TFHRKKNLQYYEISAK------- 120 (186)
Q Consensus 52 d~vilv~D~~~~~s~~~i~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~---~~~~~~~~~~~~~Sa~------- 120 (186)
.|+|+|++...+...+.+.. ..... .+.-+++|+.-.+... ....+.. .++..+++.|+.....
T Consensus 104 ggII~~f~~p~~~~~~~i~~----~~~~~~~dg~~v~Vg~~~~~~~-~~~de~~e~~~~~~~~GfE~V~~~~~~~~~~~n 178 (233)
T 3uc9_A 104 AGIILITDIRQTKPQELLHQ----FMIAAHRNTFVVLVNVNEEVEQ-DEIDELNEIWSNAFTNVIEFVNWKRSKPTVNHN 178 (233)
T ss_dssp EEEEEEECHHHHCGGGTHHH----HHHHSCTTCEEEEEECCTTCCH-HHHHHHHHHHTTSSSSCEEEEECC----CCCBC
T ss_pred ceEEEEEeCCCcchHHHHHH----HhccCCCCceEEEEecCCccCC-CchhhHHHHHHHHHhcCeEEEEecCCCcccccc
Confidence 77899997655444443332 22222 2333444443322211 1111111 2233456778865431
Q ss_pred ---CCCCchHHHHHHHHHHhCC
Q 029875 121 ---SNYNFEKPFLYLARKLAGD 139 (186)
Q Consensus 121 ---~~~gi~~l~~~l~~~i~~~ 139 (186)
.-.|+..+.+.|-......
T Consensus 179 e~gE~~Gi~RI~E~Le~h~W~~ 200 (233)
T 3uc9_A 179 DYGEKLGLDRIQEIIDTHDWLN 200 (233)
T ss_dssp TTSCBCHHHHHHHHHHHCCCTT
T ss_pred cccchhCHHHHHHHHHhCCCCC
Confidence 1235677776666444433
No 278
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=32.61 E-value=1.7e+02 Score=22.40 Aligned_cols=84 Identities=11% Similarity=0.117 Sum_probs=48.6
Q ss_pred EEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc--CCCCEE-EEEeCCCCCCcccChHH
Q 029875 27 IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIV-LCGNKVDVKNRQVKAKQ 103 (186)
Q Consensus 27 ~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~--~~~p~i-lv~nK~Dl~~~~~~~~~ 103 (186)
+.+.++|+++......+ ...+..||.+|++.... ..+.+.+.+.++.+.... .+.++. +|.|.++. ....
T Consensus 164 ~D~v~iD~~~~~~~~~~-~~al~aAd~viIvt~~e-~~Al~~~~~l~~~i~~~~~~~~~~l~GiI~n~~~~-----~~~v 236 (314)
T 3fwy_A 164 TDVVIFDVLGDVVCGGF-AAPLQHADQAVVVTAND-FDSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRA-----TDEV 236 (314)
T ss_dssp CSEEEEEECCSSCCGGG-GGGGGTCSEEEEEECSS-HHHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSC-----CHHH
T ss_pred CceEeeccCCcchhhhh-HhHHhhCCeEEEEeCCc-HHHHHHHHHHHHHHHHHhccCCCceEEEEEcCCCc-----hhHH
Confidence 44566787654332222 23466789998888654 445666656555555443 234443 66787653 2334
Q ss_pred HHHHHHcCCcEEEe
Q 029875 104 VTFHRKKNLQYYEI 117 (186)
Q Consensus 104 ~~~~~~~~~~~~~~ 117 (186)
.+++++++.+++..
T Consensus 237 ~~~a~~~~~~~lg~ 250 (314)
T 3fwy_A 237 DRFCKETNFRRLAH 250 (314)
T ss_dssp HHHHHHHTCCEEEE
T ss_pred HHHHHHhCCeEEEE
Confidence 56777778776643
No 279
>3rl5_A Metallophosphoesterase mpped2; alpha-beta fold, metallophosphodiesterase, active site mutan nucleotide polymorphism, hydrolase; 1.26A {Rattus norvegicus} PDB: 3rl3_A* 3rl4_A*
Probab=32.60 E-value=46 Score=25.54 Aligned_cols=61 Identities=11% Similarity=-0.032 Sum_probs=36.7
Q ss_pred EEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCC
Q 029875 28 RFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDV 94 (186)
Q Consensus 28 ~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl 94 (186)
.+.|=||-|.... + .+..+|++|++-|+++..+..++..+++.+... ...++++|.--.|.
T Consensus 62 i~~iSD~H~~~~~--l---~i~~~D~vi~aGDl~~~g~~~e~~~~~~~L~~l-~~~~v~~V~GNHD~ 122 (296)
T 3rl5_A 62 FVCISDTRSRTDG--I---QMPYGDILLHTGDFTELGLPSEVKKFNDWLGNL-PYEYKIVIAGNHEL 122 (296)
T ss_dssp EEEEBCCTTCCTT--C---CCCSCSEEEECSCCSSSCCHHHHHHHHHHHHTS-CCSEEEECCCTTCG
T ss_pred EEEEeeCCCCcch--h---ccCCCCEEEECCcccCCCCHHHHHHHHHHHHhC-CCCeEEEEcCCccc
Confidence 3456688664321 1 346899999999999876655555555444443 22445555555554
No 280
>3k1y_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, CDR100D; 2.50A {Corynebacterium diphtheriae} PDB: 3k20_A
Probab=31.05 E-value=37 Score=24.09 Aligned_cols=46 Identities=7% Similarity=0.008 Sum_probs=31.8
Q ss_pred cccccCcEEEEEEeCCChhhHHhHHHHHHHHHh-hcCCCCEEEEEeC
Q 029875 46 GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNK 91 (186)
Q Consensus 46 ~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~-~~~~~p~ilv~nK 91 (186)
..+..||++|++....+..---.++.|+..+.. ...++|+.++++-
T Consensus 81 ~~i~~AD~ivi~sP~Y~~~~~~~lK~~iD~~~~~~l~gK~~~~v~t~ 127 (191)
T 3k1y_A 81 SALSASDGLVVATPVFKASYTGLFKMFFDILDTDALTGMPTIIAATA 127 (191)
T ss_dssp HHHHHCSEEEEEEECBTTBSCHHHHHHHHHSCTTTTTTCEEEEEEEE
T ss_pred HHHHHCCEEEEEcCccCCcCcHHHHHHHHHhhhhhcCCCEEEEEEeC
Confidence 346689999999988775433345666666543 3467898888873
No 281
>3lcm_A SMU.1420, putative oxidoreductase; NADPH:quinone oxidoreductase, MDAB; HET: FAD NAP; 1.80A {Streptococcus mutans} PDB: 4f8y_A*
Probab=31.03 E-value=44 Score=23.56 Aligned_cols=46 Identities=4% Similarity=-0.072 Sum_probs=31.7
Q ss_pred ccccCcEEEEEEeCCChhhHHhHHHHHHHHHhh--------------cCCCCEEEEEeCC
Q 029875 47 YYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--------------CENIPIVLCGNKV 92 (186)
Q Consensus 47 ~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~--------------~~~~p~ilv~nK~ 92 (186)
.+..||++|+++-..+..---.++.|+..+... ..+++++++.+--
T Consensus 70 ~l~~AD~iV~~~P~y~~~~pa~LK~~iD~v~~~g~~~~~~~~~~~~~l~gK~~~~i~t~g 129 (196)
T 3lcm_A 70 LVTWADHLIFIFPIWWSGMPAILKGFIDRVFVADFAYSYKKVGLEGHLQGKSAWIITTHN 129 (196)
T ss_dssp HHHHCSEEEEEEECBTTBCCHHHHHHHHHHSCBTTTEEECSSSEEESCTTCEEEEEEECS
T ss_pred HHHhCCEEEEECchhhccccHHHHHHHHHHccCCcceecCCCCcccCCCCCEEEEEEcCC
Confidence 356899999999987754333567888887431 2457777776654
No 282
>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A*
Probab=30.91 E-value=64 Score=20.86 Aligned_cols=45 Identities=7% Similarity=0.113 Sum_probs=28.6
Q ss_pred ccccCcEEEEEEeCCChhhH-H-hHHHHHHHHHhhcCCCCEEEEEeC
Q 029875 47 YYIHGQCAIIMFDVTARLTY-K-NVPTWHRDLCRVCENIPIVLCGNK 91 (186)
Q Consensus 47 ~~~~ad~vilv~D~~~~~s~-~-~i~~~~~~~~~~~~~~p~ilv~nK 91 (186)
.+..+|++++........-. . .+..++..+.....++++.++++-
T Consensus 42 ~l~~~d~iiig~pty~~g~~p~~~~~~fl~~l~~~l~~k~~~~f~t~ 88 (138)
T 5nul_A 42 ELLNEDILILGCSAMTDEVLEESEFEPFIEEISTKISGKKVALFGSY 88 (138)
T ss_dssp HHTTCSEEEEEECCBTTTBCCTTTHHHHHHHHGGGCTTCEEEEEEEE
T ss_pred HHhhCCEEEEEcCccCCCCCChHHHHHHHHHHHhhcCCCEEEEEEec
Confidence 35678999888877543211 1 355666666543457888888874
No 283
>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A*
Probab=30.30 E-value=45 Score=23.13 Aligned_cols=70 Identities=3% Similarity=-0.103 Sum_probs=39.7
Q ss_pred cccccCcEEEEEEeCCChhhHHhHHHHHHHHHhh-----cCCCCEEEEEeCCCCCCcc--cChHHHHHHHHcCCcEE
Q 029875 46 GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV-----CENIPIVLCGNKVDVKNRQ--VKAKQVTFHRKKNLQYY 115 (186)
Q Consensus 46 ~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~-----~~~~p~ilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~ 115 (186)
..+..+|++||........--..++.|+..+... ..++|+.++++--...... .......++...++.++
T Consensus 67 ~~l~~aD~ii~gsP~y~~~~~~~lk~~ld~~~~~~~~~~l~~K~~~~~~t~g~~~~~~~~~~~~l~~~l~~~g~~~~ 143 (200)
T 2a5l_A 67 EDLKNCAGLALGSPTRFGNMASPLKYFLDGTSSLWLTGSLVGKPAAVFTSTASLHGGQETTQLSMLLPLLHHGMLVL 143 (200)
T ss_dssp HHHHTCSEEEEEEECBTTBCCHHHHHHHHTCHHHHHHTTTTTCEEEEEEEBSCSSCCHHHHHHHHHHHHHHTTCEEC
T ss_pred HHHHHCCEEEEEcChhccCccHHHHHHHHHHHHHhhccccCCCEEEEEEecCCCCCCHHHHHHHHHHHHHHCCCEEE
Confidence 3467899999999887643223455666655432 3578888887754322211 11122344455665554
No 284
>1t5b_A Acyl carrier protein phosphodiesterase; structural genomics, FMN, alpha/beta/alpha sandwich, PSI, protein structure initiative; HET: FMN; 1.40A {Salmonella typhimurium} SCOP: c.23.5.3 PDB: 1tik_A 2z98_A* 2d5i_A* 1v4b_A* 2z9b_A* 2z9c_A* 2z9d_A*
Probab=30.07 E-value=33 Score=23.88 Aligned_cols=46 Identities=7% Similarity=-0.005 Sum_probs=31.2
Q ss_pred ccccCcEEEEEEeCCChhhHHhHHHHHHHHHh--------------hcCCCCEEEEEeCC
Q 029875 47 YYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR--------------VCENIPIVLCGNKV 92 (186)
Q Consensus 47 ~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~--------------~~~~~p~ilv~nK~ 92 (186)
.+..||++||++......---.++.|+..+.. ...+++++++++--
T Consensus 83 ~l~~aD~iv~~~P~y~~~~p~~lK~~iD~~~~~~~~~~~~~~~~~~~l~~K~~~~i~t~g 142 (201)
T 1t5b_A 83 ELKAHDVIVIAAPMYNFNIPTQLKNYFDLIARAGITFRYTEKGPEGLVTGKRAVVLSSRG 142 (201)
T ss_dssp HHHHCSEEEEECCCBTTBCCHHHHHHHHHHCCBTTTEEEETTEEEESSCSCEEEEEEECS
T ss_pred HHHhCCEEEEEeCcccCcCCHHHHHHHHHheeCCCceecCCCCCccCCCCCeEEEEEecC
Confidence 46689999999988765322346778888753 13467777777643
No 285
>1d4a_A DT-diaphorase, quinone reductase; flavoprotein, rossman fold, oxidoreductase; HET: FAD; 1.70A {Homo sapiens} SCOP: c.23.5.3 PDB: 1dxo_A* 1gg5_A* 1kbo_A* 1kbq_A* 2f1o_A* 3jsx_A* 1h69_A* 1h66_A* 1qbg_A* 1dxq_A* 1qrd_A*
Probab=30.06 E-value=53 Score=24.59 Aligned_cols=46 Identities=11% Similarity=-0.011 Sum_probs=32.4
Q ss_pred cccCcEEEEEEeCCChhhHHhHHHHHHHHHhh--------------cCCCCEEEEEeCCC
Q 029875 48 YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--------------CENIPIVLCGNKVD 93 (186)
Q Consensus 48 ~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~--------------~~~~p~ilv~nK~D 93 (186)
+..||++||.+-.....---.++.|+..+... ..+++++++.+--.
T Consensus 91 l~~AD~IV~~~P~y~~s~Pa~LK~~iDrv~~~g~~f~~~~~~~~g~l~gK~~~~i~t~Gg 150 (273)
T 1d4a_A 91 LEAADLVIFQFPLQWFGVPAILKGWFERVFIGEFAYTYAAMYDKGPFRSKKAVLSITTGG 150 (273)
T ss_dssp HHHCSEEEEEEECBTTBCCHHHHHHHHHHSCBTTTBCTTSCGGGSTTTTCEEEEEEECSS
T ss_pred HHhCCEEEEECchhhccCCHHHHHHHHHHHhcCcccccCCCCCccccCCCEEEEEEeCCC
Confidence 67899999999997754223467888887431 24678888777544
No 286
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=29.54 E-value=97 Score=24.13 Aligned_cols=41 Identities=7% Similarity=0.019 Sum_probs=29.8
Q ss_pred cCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCE-EEEEeCCC
Q 029875 50 HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI-VLCGNKVD 93 (186)
Q Consensus 50 ~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~-ilv~nK~D 93 (186)
.++.+++|.... ..+..+..+.++.+... +.++ -+|.|++.
T Consensus 234 ~~~~~vlV~~pe-~~si~ea~r~~~~L~~~--g~~~~gvVvN~v~ 275 (354)
T 2woj_A 234 DLTTFVCVCISE-FLSLYETERLIQELISY--DMDVNSIIVNQLL 275 (354)
T ss_dssp TTEEEEEEEESS-HHHHHHHHHHHHHHHHT--TCCEEEEEEEEEC
T ss_pred CCcEEEEEeCCC-cchHHHHHHHHHHHHHc--CCCCCEEEEecCC
Confidence 578899998865 45777777777777664 4554 48899997
No 287
>1sqs_A Conserved hypothetical protein; structural genomics, alpha beta protein, PSI, protein struct initiative; HET: TLA; 1.50A {Streptococcus pneumoniae} SCOP: c.23.5.5 PDB: 2oys_A*
Probab=28.39 E-value=1.4e+02 Score=21.57 Aligned_cols=69 Identities=9% Similarity=-0.080 Sum_probs=40.0
Q ss_pred ccccCcEEEEEEeCCChhhHHhHHHHHHHHHhh-----cCCCCEEEEEeCCCCCCcccChHHHHHHHHcCCcEE
Q 029875 47 YYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV-----CENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYY 115 (186)
Q Consensus 47 ~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~-----~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 115 (186)
.+..||++|+........---.++.|+..+... ..++|++++++--.-...........++...|+.++
T Consensus 76 ~l~~AD~iI~~sP~y~~~~p~~lK~~iDr~~~~~~~~~l~gK~~~~i~t~g~~g~~~~~~~l~~~l~~~G~~~v 149 (242)
T 1sqs_A 76 ELLESDIIIISSPVYLQNVSVDTKNFIERIGGWSHLFRLAGKFVVTLDVAESNGSDNVSEYLRDIFSYMGGQIL 149 (242)
T ss_dssp HHHHCSEEEEEEEECSSSCCHHHHHHHHHTGGGTTTTTTTTCEEEEEEEESSCCSCCHHHHHHHHHHHTTCEEE
T ss_pred HHHHCCEEEEEccccccCCCHHHHHHHHHHHHhccccccCCCEEEEEEeCCCCchhhHHHHHHHHHHHCCCeee
Confidence 367899999999887654333456777776322 246788887765321111111223355566676543
No 288
>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1
Probab=26.84 E-value=70 Score=20.61 Aligned_cols=40 Identities=8% Similarity=-0.061 Sum_probs=25.3
Q ss_pred cccccCcEEEEEEeCCChhhHHhHHHHHHHH-Hhhc-CCCCEEEEEe
Q 029875 46 GYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-CRVC-ENIPIVLCGN 90 (186)
Q Consensus 46 ~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~-~~~~-~~~p~ilv~n 90 (186)
..+++++++|++.......+ .|++.- .... .++|++.|--
T Consensus 34 ~~I~~~~~vIvL~G~~t~~s-----~wv~~EI~~A~~~gkpIigV~~ 75 (111)
T 1eiw_A 34 ATPEDADAVIVLAGLWGTRR-----DEILGAVDLARKSSKPIITVRP 75 (111)
T ss_dssp CCSSSCSEEEEEGGGTTTSH-----HHHHHHHHHHTTTTCCEEEECC
T ss_pred CccccCCEEEEEeCCCcCCC-----hHHHHHHHHHHHcCCCEEEEEc
Confidence 67889999999998765332 343332 2222 5789887643
No 289
>3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2., structural genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=26.82 E-value=92 Score=23.71 Aligned_cols=40 Identities=13% Similarity=0.348 Sum_probs=32.3
Q ss_pred ccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEE
Q 029875 49 IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCG 89 (186)
Q Consensus 49 ~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~ 89 (186)
.+||+++++-....+.+-+.+..|++.+-... +.|+++--
T Consensus 98 ~Gadavlv~~P~y~~~~~~~l~~~f~~va~a~-~lPiilYn 137 (300)
T 3eb2_A 98 LGADGILAILEAYFPLKDAQIESYFRAIADAV-EIPVVIYT 137 (300)
T ss_dssp HTCSEEEEEECCSSCCCHHHHHHHHHHHHHHC-SSCEEEEE
T ss_pred cCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHC-CCCEEEEE
Confidence 47999999988877778788888888887765 58988764
No 290
>3ghf_A Septum site-determining protein MINC; structural genomics, cell division, cell cycle, septation, PSI-2, protein structure initiative; HET: CIT; 2.20A {Salmonella typhimurium LT2}
Probab=26.55 E-value=1.3e+02 Score=19.44 Aligned_cols=66 Identities=6% Similarity=0.048 Sum_probs=38.9
Q ss_pred EEEEEeCCChhhHH-hHHHHHHHHHhhcCCCCEEEEEeCCCCCCcccChHHHHHHHHcCCcEEEeccCC
Q 029875 54 AIIMFDVTARLTYK-NVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKS 121 (186)
Q Consensus 54 vilv~D~~~~~s~~-~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 121 (186)
.++.....+.+.+. .+...+...-....+.|+||-..+.+ +...-......+..+++..+.++.-.
T Consensus 18 ~vl~l~~~d~~~l~~~L~~ki~~aP~FF~~aPVVlDl~~l~--~~~dl~~L~~~l~~~gl~~vGV~g~~ 84 (120)
T 3ghf_A 18 SVVHLHEAEPEVIRQALEDKIAQAPAFLKHAPVVINVSGLE--SPVNWPELHKIVTSTGLRIIGVSGCK 84 (120)
T ss_dssp EEEEEESCCHHHHHHHHHHHHHHSHHHHTTCEEEEEEEECC--SSCCHHHHHHHHHTTTCEEEEEESCC
T ss_pred EEEEeCCCCHHHHHHHHHHHHHhChHhhCCCcEEEEccccC--ChHHHHHHHHHHHHcCCEEEEEeCCC
Confidence 34444445554443 34455555554557899998777664 22112334577788899888887643
No 291
>3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.1.10.0 PDB: 3ler_A*
Probab=25.51 E-value=84 Score=23.92 Aligned_cols=40 Identities=10% Similarity=0.159 Sum_probs=31.9
Q ss_pred ccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEE
Q 029875 49 IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCG 89 (186)
Q Consensus 49 ~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~ 89 (186)
.++|+++++-....+.+-+.+..|++.+-... +.|+++--
T Consensus 102 ~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~-~lPiilYn 141 (301)
T 3m5v_A 102 HGADGILSVAPYYNKPTQQGLYEHYKAIAQSV-DIPVLLYN 141 (301)
T ss_dssp TTCSEEEEECCCSSCCCHHHHHHHHHHHHHHC-SSCEEEEE
T ss_pred cCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhC-CCCEEEEe
Confidence 47999999987777777778888888887765 78988764
No 292
>3gfs_A FMN-dependent NADPH-azoreductase; flavoproteins, quinone reductase, flavodoxin, oligomerization, flavoprotein, oxidoreductase; HET: FMN; 2.10A {Bacillus subtilis} SCOP: c.23.5.4 PDB: 1nni_1* 2gsw_A* 3gfr_A* 3gfq_A*
Probab=25.51 E-value=29 Score=23.82 Aligned_cols=70 Identities=7% Similarity=-0.089 Sum_probs=39.5
Q ss_pred ccccCcEEEEEEeCCChhhHHhHHHHHHHHHh-hcCCCCEEEEEeCCCCCCc-ccChHHHHHHHHcCCcEEE
Q 029875 47 YYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKNR-QVKAKQVTFHRKKNLQYYE 116 (186)
Q Consensus 47 ~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~-~~~~~p~ilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~ 116 (186)
.+..||++|++....+..---.++.|+..+.. ...++|+.++++--.-... .........+...++.++.
T Consensus 60 ~i~~aD~ii~~tP~y~~~~p~~lk~~lD~l~~~~~~gK~~~~~~~sgg~~g~~~a~~~l~~~l~~~g~~~v~ 131 (174)
T 3gfs_A 60 RVTKADAIVLLSPEYHSGMSGALKNALDFLSSEQFKYKPVALLAVAGGGDGGINALNNMRTVMRGVYANVIP 131 (174)
T ss_dssp HHHHCSSEEEEEECSSSSCCHHHHHHHHTCCHHHHTTCEEEEEEECCSTTCSHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHCCEEEEEcCCcCCCCCHHHHHHHHHhCHhhhCCCcEEEEEECCCChhHHHHHHHHHHHHHHcCCEEec
Confidence 46789999999988765433345555554432 2357888888764332211 1112233555566765443
No 293
>3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A
Probab=25.21 E-value=88 Score=24.05 Aligned_cols=45 Identities=13% Similarity=0.225 Sum_probs=34.6
Q ss_pred ccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEE----eCCCC
Q 029875 49 IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCG----NKVDV 94 (186)
Q Consensus 49 ~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~----nK~Dl 94 (186)
.+||+++++-....+.+-+.+..|++.+-... +.|+++-- +..++
T Consensus 117 ~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~-~lPiilYn~P~~tg~~l 165 (314)
T 3qze_A 117 GGADACLLVTPYYNKPTQEGMYQHFRHIAEAV-AIPQILYNVPGRTSCDM 165 (314)
T ss_dssp TTCSEEEEECCCSSCCCHHHHHHHHHHHHHHS-CSCEEEEECHHHHSCCC
T ss_pred cCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhc-CCCEEEEeCccccCCCC
Confidence 47999999987777777777888888887765 78988874 35555
No 294
>3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A
Probab=25.16 E-value=89 Score=23.63 Aligned_cols=45 Identities=13% Similarity=0.311 Sum_probs=34.0
Q ss_pred ccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEE----eCCCC
Q 029875 49 IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCG----NKVDV 94 (186)
Q Consensus 49 ~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~----nK~Dl 94 (186)
.++|+++++-....+.+-+.+..|++.+.... +.|+++-- +..++
T Consensus 95 ~Gadavlv~~P~y~~~~~~~l~~~f~~ia~a~-~lPiilYn~P~~tg~~l 143 (291)
T 3tak_A 95 LGADAALLVTPYYNKPTQEGLYQHYKAIAEAV-ELPLILYNVPGRTGVDL 143 (291)
T ss_dssp HTCSEEEEECCCSSCCCHHHHHHHHHHHHHHC-CSCEEEEECHHHHSCCC
T ss_pred cCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhc-CCCEEEEecccccCCCC
Confidence 37999999987766667777888888887765 78988764 35554
No 295
>3ha2_A NADPH-quinone reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics, consortium, NESG; HET: MSE; 1.80A {Pediococcus pentosaceus atcc 25745}
Probab=25.10 E-value=81 Score=21.98 Aligned_cols=47 Identities=9% Similarity=0.083 Sum_probs=31.3
Q ss_pred cccccCcEEEEEEeCCChhhHHhHHHHHHHHHhh---------cCCCCEEEEEeCC
Q 029875 46 GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV---------CENIPIVLCGNKV 92 (186)
Q Consensus 46 ~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~---------~~~~p~ilv~nK~ 92 (186)
..+..||++|+.+......---.++.|+..+... ..+++++++.+--
T Consensus 47 ~~l~~aD~iV~~~P~y~~~~pa~lK~~iDrv~~~g~~~~~~~~l~gK~~~~~~t~g 102 (177)
T 3ha2_A 47 SLLLQNDRIILEFPLYWYSAPALLKQWMDTVMTTKFATGHQYALEGKELGIVVSTG 102 (177)
T ss_dssp HHHHTCSEEEEEEECBTTBCCHHHHHHHHHHSCHHHHSTTTCTTTTCEEEEEEEES
T ss_pred HHHHhCCEEEEECChhhccCCHHHHHHHHHHhhcccccCCCcCCCCCEEEEEEeCC
Confidence 4567899999999987654333467788876432 2457777766644
No 296
>3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str}
Probab=24.92 E-value=68 Score=24.36 Aligned_cols=41 Identities=5% Similarity=0.084 Sum_probs=32.0
Q ss_pred ccCcEEEEEEeCCCh-hhHHhHHHHHHHHHhhcC--CCCEEEEE
Q 029875 49 IHGQCAIIMFDVTAR-LTYKNVPTWHRDLCRVCE--NIPIVLCG 89 (186)
Q Consensus 49 ~~ad~vilv~D~~~~-~s~~~i~~~~~~~~~~~~--~~p~ilv~ 89 (186)
.+||+++++-....+ .+-+.+..|+..+-...+ +.|+++--
T Consensus 97 ~Gadavlv~~P~y~~~~s~~~l~~~f~~va~a~p~~~lPiilYn 140 (294)
T 3b4u_A 97 AGARNILLAPPSYFKNVSDDGLFAWFSAVFSKIGKDARDILVYN 140 (294)
T ss_dssp TTCSEEEECCCCSSCSCCHHHHHHHHHHHHHHHCTTCCCEEEEE
T ss_pred cCCCEEEEcCCcCCCCCCHHHHHHHHHHHHHhcCCCCCcEEEEE
Confidence 378999998877766 677788888888877764 78988764
No 297
>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A*
Probab=24.89 E-value=35 Score=24.00 Aligned_cols=44 Identities=5% Similarity=-0.110 Sum_probs=29.6
Q ss_pred ccccCcEEEEEEeCCChhhHHhHHHHHHHHHh-hcCCCCEEEEEe
Q 029875 47 YYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGN 90 (186)
Q Consensus 47 ~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~-~~~~~p~ilv~n 90 (186)
.+..+|++|++.-..+..---.++.|+..+.. ...++|++++++
T Consensus 66 ~i~~aD~ii~~sP~y~~~~p~~lK~~ld~l~~~~~~gK~~~~~~t 110 (197)
T 2vzf_A 66 ATCNADGLIVATPIYKASYTGLLKAFLDILPQFALAGKAALPLAT 110 (197)
T ss_dssp HHHHCSEEEEEEECBTTBCCHHHHHHHTTSCTTTTTTCEEEEEEE
T ss_pred HHHHCCEEEEEeCccCCCCCHHHHHHHHhccccccCCCEEEEEEE
Confidence 46789999999988764322234555555432 235789999988
No 298
>3si9_A DHDPS, dihydrodipicolinate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 2.10A {Bartonella henselae}
Probab=24.87 E-value=88 Score=24.08 Aligned_cols=40 Identities=13% Similarity=0.279 Sum_probs=31.9
Q ss_pred ccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEE
Q 029875 49 IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCG 89 (186)
Q Consensus 49 ~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~ 89 (186)
.+||+++++-....+.+-+.+..|++.+-... +.|+++--
T Consensus 116 ~Gadavlv~~P~y~~~~~~~l~~~f~~va~a~-~lPiilYn 155 (315)
T 3si9_A 116 AGADAVLVVTPYYNRPNQRGLYTHFSSIAKAI-SIPIIIYN 155 (315)
T ss_dssp TTCSEEEEECCCSSCCCHHHHHHHHHHHHHHC-SSCEEEEE
T ss_pred cCCCEEEECCCCCCCCCHHHHHHHHHHHHHcC-CCCEEEEe
Confidence 37999999987777777777888888887765 78988874
No 299
>3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0
Probab=24.64 E-value=92 Score=23.65 Aligned_cols=46 Identities=7% Similarity=0.220 Sum_probs=34.9
Q ss_pred ccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEE----eCCCCC
Q 029875 49 IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCG----NKVDVK 95 (186)
Q Consensus 49 ~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~----nK~Dl~ 95 (186)
.+||+++++-....+.+-+.+..|++.+-... +.|+++-- +..++.
T Consensus 101 ~Gadavlv~~P~y~~~~~~~l~~~f~~va~a~-~lPiilYn~P~~tg~~l~ 150 (297)
T 3flu_A 101 AGADYTLSVVPYYNKPSQEGIYQHFKTIAEAT-SIPMIIYNVPGRTVVSMT 150 (297)
T ss_dssp TTCSEEEEECCCSSCCCHHHHHHHHHHHHHHC-CSCEEEEECHHHHSSCCC
T ss_pred cCCCEEEECCCCCCCCCHHHHHHHHHHHHHhC-CCCEEEEECCchhccCCC
Confidence 47999999987777667777888888887765 78988874 456653
No 300
>2zki_A 199AA long hypothetical Trp repressor binding protein; alpha/beta structure, transcription; 2.90A {Sulfolobus tokodaii}
Probab=24.62 E-value=67 Score=22.25 Aligned_cols=70 Identities=7% Similarity=-0.064 Sum_probs=39.3
Q ss_pred ccccCcEEEEEEeCCChhhHHhHHHHHHHHHhh-----cCCCCEEEEEeCCCCCCcc--cChHHHHHHHHcCCcEEE
Q 029875 47 YYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV-----CENIPIVLCGNKVDVKNRQ--VKAKQVTFHRKKNLQYYE 116 (186)
Q Consensus 47 ~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~-----~~~~p~ilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~ 116 (186)
.+..+|++||........-...++.|+..+... ..++|+.++++--...... .......++...++.++.
T Consensus 67 ~l~~aD~ii~gsP~y~~~~~~~lk~~ld~~~~~~~~~~l~gK~~~~~~t~g~~~~g~~~~~~~l~~~l~~~g~~~~~ 143 (199)
T 2zki_A 67 DMRWADGFAIGSPTRYGNMAGGLKTFLDTTAILWKDNVLYGKPVTFFTEASTVHGGHETTILTMSTYAYHFGMIIVP 143 (199)
T ss_dssp HHHHCSEEEEEEECBTTBCCHHHHHHHHTTHHHHHTTSSTTCEEEEEEEBSSTTSSSSHHHHHHTHHHHHHTCEECC
T ss_pred HHHhCCEEEEECCccccCccHHHHHHHHHhhhcccccccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHHCCeEEeC
Confidence 467899999999887643223456666665322 3567888777754321111 111223455566665543
No 301
>2nx2_A Hypothetical protein YPSA; structural genomics, unknown function, PSI, protein structure initiative; 2.00A {Bacillus subtilis} SCOP: c.129.1.2
Probab=24.55 E-value=75 Score=22.35 Aligned_cols=15 Identities=7% Similarity=0.226 Sum_probs=10.5
Q ss_pred cccCcEEEEEEeCCC
Q 029875 48 YIHGQCAIIMFDVTA 62 (186)
Q Consensus 48 ~~~ad~vilv~D~~~ 62 (186)
+.++|++|++||...
T Consensus 128 vd~sD~liavyDg~~ 142 (181)
T 2nx2_A 128 IDKSDGLLLLYDPEK 142 (181)
T ss_dssp HHHSSEEEEECCTTT
T ss_pred HHHCCEEEEEEcCCC
Confidence 456788888887644
No 302
>3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, diaminopimelate biosynthesis, lyase, schiff B; 1.45A {Staphylococcus aureus} SCOP: c.1.10.0 PDB: 3di1_A 3di0_A
Probab=24.44 E-value=82 Score=23.87 Aligned_cols=45 Identities=7% Similarity=0.279 Sum_probs=34.1
Q ss_pred ccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEE----eCCCC
Q 029875 49 IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCG----NKVDV 94 (186)
Q Consensus 49 ~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~----nK~Dl 94 (186)
.++|+++++-....+.+-+.+..|++.+-... +.|+++-- +..++
T Consensus 96 ~Gadavlv~~P~y~~~~~~~l~~~f~~ia~a~-~lPiilYn~P~~tg~~l 144 (292)
T 3daq_A 96 LGADAIMLITPYYNKTNQRGLVKHFEAIADAV-KLPVVLYNVPSRTNMTI 144 (292)
T ss_dssp HTCSEEEEECCCSSCCCHHHHHHHHHHHHHHH-CSCEEEEECHHHHSCCC
T ss_pred cCCCEEEECCCCCCCCCHHHHHHHHHHHHHhC-CCCEEEEecccccCCCC
Confidence 37999999987777677777888888887765 78988763 35555
No 303
>3b6i_A Flavoprotein WRBA; flavoproteins, NADH:quinone oxidoreductase, FMN; HET: FMN 15P; 1.66A {Escherichia coli} PDB: 2r96_A* 2r97_A 2rg1_A* 3b6j_A* 3b6k_A* 3b6m_A*
Probab=24.25 E-value=44 Score=23.13 Aligned_cols=49 Identities=4% Similarity=-0.191 Sum_probs=30.9
Q ss_pred ccccccCcEEEEEEeCCChhhHHhHHHHHHHHHh-----hcCCCCEEEEEeCCC
Q 029875 45 DGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-----VCENIPIVLCGNKVD 93 (186)
Q Consensus 45 ~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~-----~~~~~p~ilv~nK~D 93 (186)
...+..+|++||........---.++.|+..+.. ...++|+.++++--.
T Consensus 63 ~~~l~~aD~ii~gsP~y~~~~~~~lk~~ld~~~~~~~~~~l~~K~~~~~~t~g~ 116 (198)
T 3b6i_A 63 PQELADYDAIIFGTPTRFGNMSGQMRTFLDQTGGLWASGALYGKLASVFSSTGT 116 (198)
T ss_dssp GGGGGGCSEEEEEEEEETTEECHHHHHHHTTCHHHHHHTTTTTCEEEEEEEESS
T ss_pred HHHHHHCCEEEEEeChhcCCchHHHHHHHHHhhhhhhhcccCCCEEEEEEeCCC
Confidence 3457789999999988654322335556555433 235678877777543
No 304
>1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A*
Probab=24.14 E-value=89 Score=23.81 Aligned_cols=45 Identities=7% Similarity=0.215 Sum_probs=34.3
Q ss_pred ccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEE----eCCCC
Q 029875 49 IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCG----NKVDV 94 (186)
Q Consensus 49 ~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~----nK~Dl 94 (186)
.+||+++++-....+.+-+.+..+++.+-... +.|+++-- +..++
T Consensus 106 ~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~-~lPiilYn~P~~tg~~l 154 (301)
T 1xky_A 106 VGVDAVMLVAPYYNKPSQEGMYQHFKAIAEST-PLPVMLYNVPGRSIVQI 154 (301)
T ss_dssp TTCSEEEEECCCSSCCCHHHHHHHHHHHHHTC-SSCEEEEECHHHHSSCC
T ss_pred cCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhc-CCCEEEEeCccccCCCC
Confidence 47999999988877777788888888887754 68988764 35555
No 305
>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus}
Probab=24.08 E-value=96 Score=23.49 Aligned_cols=40 Identities=13% Similarity=0.312 Sum_probs=31.7
Q ss_pred ccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEE
Q 029875 49 IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCG 89 (186)
Q Consensus 49 ~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~ 89 (186)
.++|+++++-....+.+-+.+..++..+-... +.|+++--
T Consensus 94 ~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~-~lPiilYn 133 (294)
T 2ehh_A 94 VGADGALVVVPYYNKPTQRGLYEHFKTVAQEV-DIPIIIYN 133 (294)
T ss_dssp TTCSEEEEECCCSSCCCHHHHHHHHHHHHHHC-CSCEEEEE
T ss_pred cCCCEEEECCCCCCCCCHHHHHHHHHHHHHhc-CCCEEEEe
Confidence 47999999988777777788888888887765 68988764
No 306
>2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661}
Probab=23.96 E-value=95 Score=23.44 Aligned_cols=40 Identities=15% Similarity=0.248 Sum_probs=31.7
Q ss_pred ccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEE
Q 029875 49 IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCG 89 (186)
Q Consensus 49 ~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~ 89 (186)
.++|+++++-....+.+-+.+..+++.+-... +.|+++--
T Consensus 94 ~Gadavlv~~P~y~~~s~~~l~~~f~~ia~a~-~lPiilYn 133 (289)
T 2yxg_A 94 VGADAVLSITPYYNKPTQEGLRKHFGKVAESI-NLPIVLYN 133 (289)
T ss_dssp HTCSEEEEECCCSSCCCHHHHHHHHHHHHHHC-SSCEEEEE
T ss_pred cCCCEEEECCCCCCCCCHHHHHHHHHHHHHhc-CCCEEEEe
Confidence 37999999988777777788888888887765 68988754
No 307
>3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A
Probab=23.76 E-value=82 Score=24.08 Aligned_cols=45 Identities=7% Similarity=0.201 Sum_probs=34.6
Q ss_pred ccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEE----eCCCC
Q 029875 49 IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCG----NKVDV 94 (186)
Q Consensus 49 ~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~----nK~Dl 94 (186)
.+||+++++--...+.+-+.+..|++.+.... +.|+++-- +..++
T Consensus 109 ~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~-~lPiilYn~P~~tg~~l 157 (304)
T 3l21_A 109 EGAHGLLVVTPYYSKPPQRGLQAHFTAVADAT-ELPMLLYDIPGRSAVPI 157 (304)
T ss_dssp HTCSEEEEECCCSSCCCHHHHHHHHHHHHTSC-SSCEEEEECHHHHSSCC
T ss_pred cCCCEEEECCCCCCCCCHHHHHHHHHHHHHhc-CCCEEEEeCccccCCCC
Confidence 37999999987777777778888888887765 78998874 35665
No 308
>2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti}
Probab=23.70 E-value=96 Score=23.44 Aligned_cols=45 Identities=11% Similarity=0.244 Sum_probs=34.4
Q ss_pred ccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEE----eCCCC
Q 029875 49 IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCG----NKVDV 94 (186)
Q Consensus 49 ~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~----nK~Dl 94 (186)
.+||+++++-....+.+-+.+..+++.+.... +.|+++-- +..++
T Consensus 94 ~Gadavlv~~P~y~~~s~~~l~~~f~~ia~a~-~lPiilYn~P~~tg~~l 142 (292)
T 2vc6_A 94 AGADGVLIVSPYYNKPTQEGIYQHFKAIDAAS-TIPIIVYNIPGRSAIEI 142 (292)
T ss_dssp TTCSEEEEECCCSSCCCHHHHHHHHHHHHHHC-SSCEEEEECHHHHSCCC
T ss_pred cCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhC-CCCEEEEeCccccCcCC
Confidence 47999999988877777788888888887765 68988754 45554
No 309
>2hpv_A FMN-dependent NADH-azoreductase; structural genomics, PS protein structure initiative, southeast collaboratory for S genomics, secsg; HET: FMN; 2.00A {Enterococcus faecalis}
Probab=23.57 E-value=69 Score=22.41 Aligned_cols=44 Identities=5% Similarity=0.043 Sum_probs=30.3
Q ss_pred ccccCcEEEEEEeCCChhhHHhHHHHHHHHHhh--------------cCCCCEEEEEe
Q 029875 47 YYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--------------CENIPIVLCGN 90 (186)
Q Consensus 47 ~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~--------------~~~~p~ilv~n 90 (186)
.+..||++||++-.....---.++.|+..+... ..+++++++.+
T Consensus 91 ~l~~aD~iv~~~P~y~~~~pa~lK~~iD~~~~~g~~~~~~~~~~~~~l~gK~~~~i~t 148 (208)
T 2hpv_A 91 QFLSADKVVIANPMWNLNVPTRLKAWVDTINVAGKTFQYTAEGPKPLTSGKKALHIQS 148 (208)
T ss_dssp HHHHCSEEEEEEECBTTBCCHHHHHHHHHHCCBTTTEEEETTEEEESCCSCEEEEEEE
T ss_pred HHHhCCEEEEEeccccCCCCHHHHHHHHHHhcCCcEeecCCCCCccCCCCCeEEEEEe
Confidence 367899999999987654333467888887531 24567777765
No 310
>2khz_A C-MYC-responsive protein RCL; flexible loop, nucleus, phosphoprotein, nuclear protein; NMR {Rattus norvegicus} PDB: 2klh_A*
Probab=23.42 E-value=1.1e+02 Score=20.99 Aligned_cols=42 Identities=7% Similarity=-0.028 Sum_probs=26.2
Q ss_pred cccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCC
Q 029875 46 GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVD 93 (186)
Q Consensus 46 ~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~D 93 (186)
..++.||++|..++.-+..+--++-. . ...++|++++.+..+
T Consensus 73 ~~i~~aD~vva~~~~~d~Gt~~EiGy-A-----~algKPVi~l~~~~~ 114 (165)
T 2khz_A 73 NWLQQADVVVAEVTQPSLGVGYELGR-A-----VALGKPILCLFRPQS 114 (165)
T ss_dssp HHHHHCSEEEEECSSCCHHHHHHHHH-H-----HHTCSSEEEEECTTT
T ss_pred HHHHhCCEEEEECCCCCCCHHHHHHH-H-----HHCCCEEEEEEcCCC
Confidence 35778999999998444433222211 1 114899999876664
No 311
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}
Probab=22.88 E-value=1e+02 Score=23.46 Aligned_cols=46 Identities=7% Similarity=0.193 Sum_probs=34.8
Q ss_pred ccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEE----eCCCCC
Q 029875 49 IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCG----NKVDVK 95 (186)
Q Consensus 49 ~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~----nK~Dl~ 95 (186)
.++|+++++-....+.+-+.+..+++.+-... +.|+++-- +..++.
T Consensus 110 ~Gadavlv~~P~y~~~~~~~l~~~f~~ia~a~-~lPiilYn~P~~tg~~l~ 159 (304)
T 3cpr_A 110 AGADGLLVVTPYYSKPSQEGLLAHFGAIAAAT-EVPICLYDIPGRSGIPIE 159 (304)
T ss_dssp TTCSEEEEECCCSSCCCHHHHHHHHHHHHHHC-CSCEEEEECHHHHSSCCC
T ss_pred cCCCEEEECCCCCCCCCHHHHHHHHHHHHHhc-CCCEEEEeCccccCcCCC
Confidence 47999999988777777778888888887765 68988765 356653
No 312
>1w3i_A EDA, 2-keto-3-deoxy gluconate aldolase; archaeal metabolism, pyruvate; 1.7A {Sulfolobus solfataricus} SCOP: c.1.10.1 PDB: 1w37_A 1w3n_A* 1w3t_A* 2yda_A*
Probab=22.44 E-value=1.1e+02 Score=23.15 Aligned_cols=46 Identities=15% Similarity=0.214 Sum_probs=34.6
Q ss_pred ccCcEEEEEEeCCCh-hhHHhHHHHHHHHHhhcCCCCEEEEE----eCCCCC
Q 029875 49 IHGQCAIIMFDVTAR-LTYKNVPTWHRDLCRVCENIPIVLCG----NKVDVK 95 (186)
Q Consensus 49 ~~ad~vilv~D~~~~-~s~~~i~~~~~~~~~~~~~~p~ilv~----nK~Dl~ 95 (186)
.+||+++++-....+ .+-+.+..|++.+-... +.|+++-- +..++.
T Consensus 90 ~Gadavlv~~P~y~~~~s~~~l~~~f~~va~a~-~lPiilYn~P~~tg~~l~ 140 (293)
T 1w3i_A 90 FDIVGIASYAPYYYPRMSEKHLVKYFKTLCEVS-PHPVYLYNYPTATGKDID 140 (293)
T ss_dssp SCCSEEEEECCCSCSSCCHHHHHHHHHHHHHHC-SSCEEEEECHHHHSCCCC
T ss_pred cCCCEEEEcCCCCCCCCCHHHHHHHHHHHHhhC-CCCEEEEECchhhCcCCC
Confidence 479999999887777 67788888888887765 68888764 355553
No 313
>1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A
Probab=22.19 E-value=96 Score=23.69 Aligned_cols=40 Identities=8% Similarity=0.116 Sum_probs=31.5
Q ss_pred ccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEE
Q 029875 49 IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCG 89 (186)
Q Consensus 49 ~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~ 89 (186)
.+||+++++-....+.+-+.+..|++.+.... +.|+++--
T Consensus 106 ~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~-~lPiilYn 145 (306)
T 1o5k_A 106 LGANGVLVVTPYYNKPTQEGLYQHYKYISERT-DLGIVVYN 145 (306)
T ss_dssp HTCSEEEEECCCSSCCCHHHHHHHHHHHHTTC-SSCEEEEE
T ss_pred cCCCEEEECCCCCCCCCHHHHHHHHHHHHHhC-CCCEEEEe
Confidence 47999999988777777788888888887654 68988764
No 314
>3s2y_A Chromate reductase; uranium reductase, oxidoreductase; HET: FMN PG4; 2.24A {Gluconacetobacter hansenii}
Probab=27.57 E-value=19 Score=25.71 Aligned_cols=47 Identities=11% Similarity=-0.024 Sum_probs=29.2
Q ss_pred ccccccCcEEEEEEeCCChhhHHhHHHHHHHHHh----hcCCCCEEEEEeC
Q 029875 45 DGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR----VCENIPIVLCGNK 91 (186)
Q Consensus 45 ~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~----~~~~~p~ilv~nK 91 (186)
...+..||++|++.-..+..---.++.|+..+.. ...++|+.++++-
T Consensus 68 ~~~i~~AD~iIi~tP~Y~~s~p~~lK~~iD~l~~~~~~~l~gK~v~~v~ts 118 (199)
T 3s2y_A 68 AQQIATADAVVIVTPEYNYSVPGVLKNAIDWLSRVSPQPLAGKPVALVTAS 118 (199)
Confidence 4456789999999888765322234555555543 2346777777653
No 315
>3u7r_A NADPH-dependent FMN reductase; alpha/beta twisted open-sheet, lavoprotein, quinone reductas oxidoreductase; HET: MSE FNR 2PE; 1.40A {Paracoccus denitrificans}
Probab=21.60 E-value=54 Score=23.22 Aligned_cols=48 Identities=15% Similarity=0.164 Sum_probs=30.1
Q ss_pred ccccccCcEEEEEEeCCCh---hhHHhHHHHHHHH--HhhcCCCCEEEEEeCC
Q 029875 45 DGYYIHGQCAIIMFDVTAR---LTYKNVPTWHRDL--CRVCENIPIVLCGNKV 92 (186)
Q Consensus 45 ~~~~~~ad~vilv~D~~~~---~s~~~i~~~~~~~--~~~~~~~p~ilv~nK~ 92 (186)
...+..||++|++..-.+. ..+.+.-.|+... .....++|+.+++.-.
T Consensus 62 ~~~i~~aD~~ii~tPeYn~s~pg~LKn~iDwlsr~~~~~~~~gKpv~~v~~S~ 114 (190)
T 3u7r_A 62 KDRIEHSDAVLAITPEYNRSYPGMIKNAIDWATRPYGQNSWKGKPAAVIGTSP 114 (190)
T ss_dssp HHHHHTSSEEEEECCCBTTBCCHHHHHHHHHHHCSTTCCTTTTCEEEEEEEES
T ss_pred HHHHHhCCcEEEechhhcccCCHHHHHHHHHhcccccCCccCCCEEEEEEeCC
Confidence 3457789999999877664 3455555565421 1123578888887644
No 316
>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A
Probab=21.37 E-value=1e+02 Score=23.28 Aligned_cols=40 Identities=8% Similarity=0.084 Sum_probs=31.1
Q ss_pred ccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEE
Q 029875 49 IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCG 89 (186)
Q Consensus 49 ~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~ 89 (186)
.++|+++++-....+.+-+.+..|++.+-... +.|+++--
T Consensus 95 ~Gadavlv~~P~y~~~s~~~l~~~f~~ia~a~-~lPiilYn 134 (292)
T 2ojp_A 95 SGIVGCLTVTPYYNRPSQEGLYQHFKAIAEHT-DLPQILYN 134 (292)
T ss_dssp SSCSEEEEECCCSSCCCHHHHHHHHHHHHTTC-SSCEEEEC
T ss_pred cCCCEEEECCCCCCCCCHHHHHHHHHHHHHhc-CCCEEEEe
Confidence 47999999988777777778888888887654 68888654
No 317
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=21.34 E-value=49 Score=24.52 Aligned_cols=46 Identities=2% Similarity=-0.174 Sum_probs=31.0
Q ss_pred cccccCcEEEEEEeCCChhhHHhHHHHHHHHHh------hcCCCCEEEEEeC
Q 029875 46 GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR------VCENIPIVLCGNK 91 (186)
Q Consensus 46 ~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~------~~~~~p~ilv~nK 91 (186)
..+..||++||+.-..+..---.++.|+..+.. ...++|+.++++-
T Consensus 94 ~~i~~AD~iI~~sP~Yn~sipa~LKn~iD~l~~~~~~~~~l~gK~v~~v~ts 145 (247)
T 2q62_A 94 ELSIWSEGQVWVSPERHGAMTGIMKAQIDWIPLSTGSIRPTQGKTLAVMQVS 145 (247)
T ss_dssp HHHHHCSEEEEEEECSSSSCCHHHHHHHHTSCSCBTTBCSSTTCEEEEEEEC
T ss_pred HHHHHCCEEEEEeCCCCCCccHHHHHHHHHhhhccCcccccCCCEEEEEEeC
Confidence 346689999999988775433345566666543 2357888888874
No 318
>4hhu_A OR280; engineered protein, PSI-biology, structural genomi unknown function; HET: AE4 PG4; 2.00A {Synthetic construct}
Probab=21.00 E-value=1.8e+02 Score=19.01 Aligned_cols=65 Identities=9% Similarity=0.100 Sum_probs=36.6
Q ss_pred EEEEEEeCCChhhHHh-HHHHHHHHHhhcC-------CCCEEEEEeCCCCCC-cccChHHHHHHHHcCCcEEEe
Q 029875 53 CAIIMFDVTARLTYKN-VPTWHRDLCRVCE-------NIPIVLCGNKVDVKN-RQVKAKQVTFHRKKNLQYYEI 117 (186)
Q Consensus 53 ~vilv~D~~~~~s~~~-i~~~~~~~~~~~~-------~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~ 117 (186)
+..++|...+.+.|+. ++..+.+.++... ...+.++++-.-..- .....+...++.++++.+...
T Consensus 3 vm~i~f~gddlea~ekalkemirqarkfagtvtytl~gn~l~i~itgvpeqvrkelakeaerl~~efni~v~y~ 76 (170)
T 4hhu_A 3 VMVIVFEGDDLEALEKALKEMIRQARKFAGTVTYTLSGNRLVIVITGVPEQVRKELAKEAERLKAEFNINVQYQ 76 (170)
T ss_dssp EEEEEEECSCHHHHHHHHHHHHHHHHHTTCEEEEEEETTEEEEEEESCCHHHHHHHHHHHHHHHHHHTCEEEEE
T ss_pred eEEEEEecCcHHHHHHHHHHHHHHHHhhcceEEEEEeCCEEEEEEeCCcHHHHHHHHHHHHHHHHhcceEEEEE
Confidence 4678899999888885 4566777666542 334555554432110 111122346777888764443
No 319
>3d0c_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI-2, structural genomics; 1.90A {Oceanobacillus iheyensis HTE831}
Probab=20.82 E-value=96 Score=23.81 Aligned_cols=40 Identities=15% Similarity=0.259 Sum_probs=31.3
Q ss_pred ccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEE
Q 029875 49 IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCG 89 (186)
Q Consensus 49 ~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~ 89 (186)
.+||+++++-....+.+-+.+..++..+-... +.|+++--
T Consensus 105 ~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~-~lPiilYn 144 (314)
T 3d0c_A 105 SGADCVMIHQPVHPYITDAGAVEYYRNIIEAL-DAPSIIYF 144 (314)
T ss_dssp TTCSEEEECCCCCSCCCHHHHHHHHHHHHHHS-SSCEEEEE
T ss_pred cCCCEEEECCCCCCCCCHHHHHHHHHHHHHhC-CCCEEEEe
Confidence 47999999987777777777888888887765 58988764
No 320
>1ydg_A Trp repressor binding protein WRBA; tetramer, structural genomics, PSI, protein structure initiative; 2.00A {Deinococcus radiodurans} SCOP: c.23.5.8 PDB: 1yrh_A*
Probab=20.79 E-value=59 Score=22.87 Aligned_cols=47 Identities=4% Similarity=-0.106 Sum_probs=30.1
Q ss_pred cccccCcEEEEEEeCCChhhHHhHHHHHHHHHh-----hcCCCCEEEEEeCC
Q 029875 46 GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-----VCENIPIVLCGNKV 92 (186)
Q Consensus 46 ~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~-----~~~~~p~ilv~nK~ 92 (186)
..+..+|++||........--..++.|+..+.. ...++|+.++++--
T Consensus 74 ~~l~~aD~ii~gsP~y~~~~~~~lk~~ld~~~~~~~~~~l~gK~~~~~~t~g 125 (211)
T 1ydg_A 74 ADLEWAEAIVFSSPTRFGGATSQMRAFIDTLGGLWSSGKLANKTFSAMTSAQ 125 (211)
T ss_dssp HHHHHCSEEEEEEEEETTEECHHHHHHHHTTHHHHHTTTTTTCEEEEEEEES
T ss_pred HHHHHCCEEEEEcCccccCccHHHHHHHHHhccccccccCCCCEEEEEEeCC
Confidence 346789999999988664322345666666542 13567877777643
No 321
>2f62_A Nucleoside 2-deoxyribosyltransferase; SGPP, structural genomics, PSI, S genomics of pathogenic protozoa consortium; HET: 12M; 1.50A {Trypanosoma brucei} SCOP: c.23.14.1 PDB: 2a0k_A* 2f2t_A* 2f64_A* 2f67_A*
Probab=20.63 E-value=91 Score=21.47 Aligned_cols=41 Identities=10% Similarity=-0.108 Sum_probs=24.4
Q ss_pred cccccCcEEEEEEeC---C--ChhhHHhHHHHHHHHHhhcCCCCEEEEEeCC
Q 029875 46 GYYIHGQCAIIMFDV---T--ARLTYKNVPTWHRDLCRVCENIPIVLCGNKV 92 (186)
Q Consensus 46 ~~~~~ad~vilv~D~---~--~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~ 92 (186)
..++.||++|.++|. . +..+.-++-. ....++|++++.+..
T Consensus 63 ~~i~~aD~vVA~ldpf~g~~~D~GTafEiGy------A~AlgKPVi~l~~d~ 108 (161)
T 2f62_A 63 QMIKDCDAVIADLSPFRGHEPDCGTAFEVGC------AAALNKMVLTFTSDR 108 (161)
T ss_dssp HHHHHCSEEEEECCCCSSSSCCHHHHHHHHH------HHHTTCEEEEECSCC
T ss_pred HHHHhCCEEEEEecCCCCCCCCCcHHHHHHH------HHHCCCEEEEEEcCc
Confidence 456789999999983 2 3322222211 112479999886643
No 322
>2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, diaminopimelate biosyn lyase, lysine biosynthesis, schiff base; 1.50A {Hahella chejuensis}
Probab=20.63 E-value=97 Score=23.54 Aligned_cols=45 Identities=13% Similarity=0.223 Sum_probs=34.0
Q ss_pred ccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEE----eCCCC
Q 029875 49 IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCG----NKVDV 94 (186)
Q Consensus 49 ~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~----nK~Dl 94 (186)
.+||+++++-....+.+-+.+..+++.+-... +.|+++-- +..++
T Consensus 94 ~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~-~lPiilYn~P~~tg~~l 142 (297)
T 2rfg_A 94 AGADAVLCVAGYYNRPSQEGLYQHFKMVHDAI-DIPIIVYNIPPRAVVDI 142 (297)
T ss_dssp HTCSEEEECCCTTTCCCHHHHHHHHHHHHHHC-SSCEEEEECHHHHSCCC
T ss_pred cCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhc-CCCEEEEeCccccCCCC
Confidence 37999999988777777788888888887765 68888754 35554
No 323
>2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A*
Probab=20.57 E-value=1.1e+02 Score=23.83 Aligned_cols=40 Identities=8% Similarity=0.220 Sum_probs=31.3
Q ss_pred ccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEE
Q 029875 49 IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCG 89 (186)
Q Consensus 49 ~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~ 89 (186)
.+||+++++-....+.+-+.+..++..+-... +.|+++--
T Consensus 125 ~Gadavlv~~P~Y~~~s~~~l~~~f~~VA~a~-~lPiilYn 164 (343)
T 2v9d_A 125 AGADGIVVINPYYWKVSEANLIRYFEQVADSV-TLPVMLYN 164 (343)
T ss_dssp HTCSEEEEECCSSSCCCHHHHHHHHHHHHHTC-SSCEEEEE
T ss_pred cCCCEEEECCCCCCCCCHHHHHHHHHHHHHhc-CCCEEEEe
Confidence 37999999988777777778888888887754 68888754
Done!