BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029876
(186 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2V6U|A Chain A, High Resolution Crystal Structure Of Pterin-4a-
Carbinolamine Dehydratase From Toxoplasma Gondii
pdb|2V6U|B Chain B, High Resolution Crystal Structure Of Pterin-4a-
Carbinolamine Dehydratase From Toxoplasma Gondii
Length = 104
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 45/92 (48%), Gaps = 5/92 (5%)
Query: 79 LRPMAEDSAK--HLMPKVVGWDLVNENGILKLNRSLKVKSFTKGLELFKLVADVAEAEGH 136
L +A +SA+ L V W L + G L + R + F + VA A+ H
Sbjct: 4 LARLAANSARLLQLHKTVPQWHLTD--GHLSIKRKFQFSDFNEAWGFMSRVALYADKVDH 61
Query: 137 HPDLHLVGWNNVQIEICTHAVGGLTENDFILA 168
HP+ + V +N V +E+ TH GLTE DF LA
Sbjct: 62 HPNWYNV-YNTVDVELSTHDAAGLTEKDFALA 92
>pdb|2V6S|A Chain A, Medium Resolution Crystal Structure Of Pterin-4a-
Carbinolamine Dehydratase From Toxoplasma Gondii
pdb|2V6S|B Chain B, Medium Resolution Crystal Structure Of Pterin-4a-
Carbinolamine Dehydratase From Toxoplasma Gondii
pdb|2V6T|A Chain A, Crystal Structure Of A Complex Of Pterin-4a-Carbinolamine
Dehydratase From Toxoplasma Gondii With 7,8-
Dihydrobiopterin
pdb|2V6T|B Chain B, Crystal Structure Of A Complex Of Pterin-4a-Carbinolamine
Dehydratase From Toxoplasma Gondii With 7,8-
Dihydrobiopterin
Length = 106
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 45/92 (48%), Gaps = 5/92 (5%)
Query: 79 LRPMAEDSAK--HLMPKVVGWDLVNENGILKLNRSLKVKSFTKGLELFKLVADVAEAEGH 136
L +A +SA+ L V W L + G L + R + F + VA A+ H
Sbjct: 6 LARLAANSARLLQLHKTVPQWHLTD--GHLSIKRKFQFSDFNEAWGFMSRVALYADKVDH 63
Query: 137 HPDLHLVGWNNVQIEICTHAVGGLTENDFILA 168
HP+ + V +N V +E+ TH GLTE DF LA
Sbjct: 64 HPNWYNV-YNTVDVELSTHDAAGLTEKDFALA 94
>pdb|1USM|A Chain A, Dcoh, A Bifunctional Protein-Binding Transcriptional
Coactivator, Pro9leu Mutant
Length = 80
Score = 46.2 bits (108), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 98 DLVNENGILKLNRSLKVKSFTKGLELFKLVADVAEAEGHHPDLHLVGWNNVQIEICTHAV 157
D + +L ++ +F + L+ V +AE E HHP L V W V +E TH+
Sbjct: 2 DWEERENLKRLVKTFAFPNFREALDFANRVGALAERENHHPRL-TVEWGRVTVEWWTHSA 60
Query: 158 GGLTENDFILA 168
GG+TE D +A
Sbjct: 61 GGVTEKDREMA 71
>pdb|1RU0|A Chain A, Crystal Structure Of Dcoh2, A Paralog Of Dcoh, The
Dimerization Cofactor Of Hnf-1
pdb|1RU0|B Chain B, Crystal Structure Of Dcoh2, A Paralog Of Dcoh, The
Dimerization Cofactor Of Hnf-1
Length = 105
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 47/100 (47%), Gaps = 5/100 (5%)
Query: 76 TKDLRPMAEDSAKHLMP--KVVGWDLVNENGILKLNRSLKVKSFTKGLELFKLVADVAEA 133
+ D + + + L+P K GW ++E + + K+F + VA AE
Sbjct: 4 SSDAQWLTAEERDQLIPGLKAAGWSELSERDAIY--KEFSFKNFNQAFGFMSRVALQAEK 61
Query: 134 EGHHPDLHLVGWNNVQIEICTHAVGGLTENDFILAAKINR 173
HHP+ V +N VQI + +H GGLT+ D LA I +
Sbjct: 62 MNHHPEWFNV-YNKVQITLTSHDCGGLTKRDVKLAQFIEK 100
>pdb|2EBB|A Chain A, Crystal Structure Of Pterin-4-Alpha-Carbinolamine
Dehydratase (Pterin Carbinolamine Dehydratase) From
Geobacillus Kaustophilus Hta426
Length = 101
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 50/93 (53%), Gaps = 4/93 (4%)
Query: 82 MAEDSAKHLMPKVVGWDLVNENGILKLNRSLKVKSFTKGLELFKLVADVAEAEGHHPDLH 141
+ E+ + L+ K GW L +E I+K R + + +G+E + +A ++E HHP +
Sbjct: 3 LTEEEVQALLEKADGWKLADERWIVKKYR---FQDYLQGIEFVRRIAAISENANHHPFIS 59
Query: 142 LVGWNNVQIEICTHAVGGLTENDFILAAKINRL 174
+ + + +++ + GLT+ DF LA + + +
Sbjct: 60 -IDYKLITVKLSSWRAKGLTKLDFDLAKQYDEV 91
>pdb|1USO|A Chain A, Dcoh, A Bifunctional Protein-binding Transcriptional
Coactivator, Pro9leu Mutant
pdb|1USO|B Chain B, Dcoh, A Bifunctional Protein-binding Transcriptional
Coactivator, Pro9leu Mutant
Length = 80
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 107 KLNRSLKVKSFTKGLELFKLVADVAEAEGHHPDLHLVGWNNVQIEICTHAVGGLTENDFI 166
+L ++ +F + L+ V +AE E HHP L V W V +E TH+ GG+TE D
Sbjct: 11 RLVKTFAFPNFREALDFANRVGALAERENHHPRL-TVEWGRVTVEWWTHSAGGVTEKDRE 69
Query: 167 LA 168
+A
Sbjct: 70 MA 71
>pdb|3JST|A Chain A, Crystal Structure Of Transcriptional CoactivatorPTERIN
DEHYDRATASE From Brucella Melitensis
pdb|3JST|B Chain B, Crystal Structure Of Transcriptional CoactivatorPTERIN
DEHYDRATASE From Brucella Melitensis
Length = 97
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 38/79 (48%), Gaps = 3/79 (3%)
Query: 96 GWDLVNENGILKLNRSLKVKSFTKGLELFKLVADVAEAEGHHPDLHLVGWNNVQIEICTH 155
GW V+ G + RS K K F+ A AE HHP+ +N V + + TH
Sbjct: 20 GWQKVD--GREAITRSFKFKDFSTAFGFMAQAALYAEKLDHHPEW-FNAYNRVDVTLATH 76
Query: 156 AVGGLTENDFILAAKINRL 174
+ G+TE D +A K+N +
Sbjct: 77 SENGVTELDIKMARKMNAI 95
>pdb|3HXA|A Chain A, Crystal Structure Of Dcoh1thr51ser
pdb|3HXA|B Chain B, Crystal Structure Of Dcoh1thr51ser
pdb|3HXA|C Chain C, Crystal Structure Of Dcoh1thr51ser
pdb|3HXA|D Chain D, Crystal Structure Of Dcoh1thr51ser
pdb|3HXA|E Chain E, Crystal Structure Of Dcoh1thr51ser
pdb|3HXA|F Chain F, Crystal Structure Of Dcoh1thr51ser
pdb|3HXA|G Chain G, Crystal Structure Of Dcoh1thr51ser
pdb|3HXA|H Chain H, Crystal Structure Of Dcoh1thr51ser
Length = 104
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 46/98 (46%), Gaps = 7/98 (7%)
Query: 82 MAEDSAKHLMP--KVVGW-DLVNENGILKLNRSLKVKSFTKGLELFKLVADVAEAEGHHP 138
++ + L+P + VGW +L + I K K F + VA AE HHP
Sbjct: 8 LSAEERDQLLPNLRAVGWNELEGRDAIFK---QFHFKDFNRAFGFMSRVALQAEKLDHHP 64
Query: 139 DLHLVGWNNVQIEICTHAVGGLTENDFILAAKINRLDI 176
+ V +N V I + TH GL+E D LA+ I ++ +
Sbjct: 65 EWFNV-YNKVHITLSTHECAGLSERDINLASFIEQVAV 101
>pdb|1DCH|A Chain A, Crystal Structure Of Dcoh, A Bifunctional, Protein-Binding
Transcription Coactivator
pdb|1DCH|B Chain B, Crystal Structure Of Dcoh, A Bifunctional, Protein-Binding
Transcription Coactivator
pdb|1DCH|C Chain C, Crystal Structure Of Dcoh, A Bifunctional, Protein-Binding
Transcription Coactivator
pdb|1DCH|D Chain D, Crystal Structure Of Dcoh, A Bifunctional, Protein-Binding
Transcription Coactivator
pdb|1DCH|E Chain E, Crystal Structure Of Dcoh, A Bifunctional, Protein-Binding
Transcription Coactivator
pdb|1DCH|F Chain F, Crystal Structure Of Dcoh, A Bifunctional, Protein-Binding
Transcription Coactivator
pdb|1DCH|G Chain G, Crystal Structure Of Dcoh, A Bifunctional, Protein-Binding
Transcription Coactivator
pdb|1DCH|H Chain H, Crystal Structure Of Dcoh, A Bifunctional, Protein-Binding
Transcription Coactivator
pdb|1DCO|A Chain A, Dcoh, A Bifunctional Protein-Binding Transcriptional
Coactivator
pdb|1DCO|B Chain B, Dcoh, A Bifunctional Protein-Binding Transcriptional
Coactivator
pdb|1DCO|C Chain C, Dcoh, A Bifunctional Protein-Binding Transcriptional
Coactivator
pdb|1DCO|D Chain D, Dcoh, A Bifunctional Protein-Binding Transcriptional
Coactivator
pdb|1DCO|E Chain E, Dcoh, A Bifunctional Protein-Binding Transcriptional
Coactivator
pdb|1DCO|F Chain F, Dcoh, A Bifunctional Protein-Binding Transcriptional
Coactivator
pdb|1DCO|G Chain G, Dcoh, A Bifunctional Protein-Binding Transcriptional
Coactivator
pdb|1DCO|H Chain H, Dcoh, A Bifunctional Protein-Binding Transcriptional
Coactivator
pdb|1DCP|A Chain A, Dcoh, A Bifunctional Protein-Binding Transcriptional
Coactivator, Complexed With Biopterin
pdb|1DCP|B Chain B, Dcoh, A Bifunctional Protein-Binding Transcriptional
Coactivator, Complexed With Biopterin
pdb|1DCP|D Chain D, Dcoh, A Bifunctional Protein-Binding Transcriptional
Coactivator, Complexed With Biopterin
pdb|1DCP|E Chain E, Dcoh, A Bifunctional Protein-Binding Transcriptional
Coactivator, Complexed With Biopterin
pdb|1DCP|F Chain F, Dcoh, A Bifunctional Protein-Binding Transcriptional
Coactivator, Complexed With Biopterin
pdb|1DCP|H Chain H, Dcoh, A Bifunctional Protein-Binding Transcriptional
Coactivator, Complexed With Biopterin
Length = 104
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 46/98 (46%), Gaps = 7/98 (7%)
Query: 82 MAEDSAKHLMP--KVVGW-DLVNENGILKLNRSLKVKSFTKGLELFKLVADVAEAEGHHP 138
++ + L+P + VGW +L + I K K F + VA AE HHP
Sbjct: 8 LSAEERDQLLPNLRAVGWNELEGRDAIFK---QFHFKDFNRAFGFMTRVALQAEKLDHHP 64
Query: 139 DLHLVGWNNVQIEICTHAVGGLTENDFILAAKINRLDI 176
+ V +N V I + TH GL+E D LA+ I ++ +
Sbjct: 65 EWFNV-YNKVHITLSTHECAGLSERDINLASFIEQVAV 101
>pdb|1DCP|C Chain C, Dcoh, A Bifunctional Protein-Binding Transcriptional
Coactivator, Complexed With Biopterin
pdb|1DCP|G Chain G, Dcoh, A Bifunctional Protein-Binding Transcriptional
Coactivator, Complexed With Biopterin
Length = 104
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 46/98 (46%), Gaps = 7/98 (7%)
Query: 82 MAEDSAKHLMP--KVVGW-DLVNENGILKLNRSLKVKSFTKGLELFKLVADVAEAEGHHP 138
++ + L+P + VGW +L + I K K F + VA AE HHP
Sbjct: 8 LSAEERDQLLPNLRAVGWNELEGRDAIFK---QFHFKDFNRAFGFMTRVALQAEKLDHHP 64
Query: 139 DLHLVGWNNVQIEICTHAVGGLTENDFILAAKINRLDI 176
+ V +N V I + TH GL+E D LA+ I ++ +
Sbjct: 65 EWFNV-YNKVHITLSTHECAGLSERDINLASFIEQVAV 101
>pdb|1F93|A Chain A, Crystal Structure Of A Complex Between The Dimerization
Domain Of Hnf-1 Alpha And The Coactivator Dcoh
pdb|1F93|B Chain B, Crystal Structure Of A Complex Between The Dimerization
Domain Of Hnf-1 Alpha And The Coactivator Dcoh
pdb|1F93|C Chain C, Crystal Structure Of A Complex Between The Dimerization
Domain Of Hnf-1 Alpha And The Coactivator Dcoh
pdb|1F93|D Chain D, Crystal Structure Of A Complex Between The Dimerization
Domain Of Hnf-1 Alpha And The Coactivator Dcoh
Length = 104
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 46/98 (46%), Gaps = 7/98 (7%)
Query: 82 MAEDSAKHLMP--KVVGW-DLVNENGILKLNRSLKVKSFTKGLELFKLVADVAEAEGHHP 138
++ + L+P + VGW +L + I K K F + VA AE HHP
Sbjct: 8 LSAEERDQLLPNLRAVGWNELEGRDAIFK---QFHFKDFNRAFGFXTRVALQAEKLDHHP 64
Query: 139 DLHLVGWNNVQIEICTHAVGGLTENDFILAAKINRLDI 176
+ V +N V I + TH GL+E D LA+ I ++ +
Sbjct: 65 EWFNV-YNKVHITLSTHECAGLSERDINLASFIEQVAV 101
>pdb|1ZO1|I Chain I, If2, If1, And Trna Fitted To Cryo-Em Data Of E. Coli 70s
Initiation Complex
Length = 501
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 23/41 (56%)
Query: 146 NNVQIEICTHAVGGLTENDFILAAKINRLDIHHLLRRKISA 186
+ V+++I VGG+TE D LAA N + + +R SA
Sbjct: 327 DEVKVKIIGSGVGGITETDATLAAASNAILVGFNVRADASA 367
>pdb|1KEQ|A Chain A, Crystal Structure Of F65aY131C CARBONIC ANHYDRASE V,
Covalently Modified With 4-Chloromethylimidazole
pdb|1KEQ|B Chain B, Crystal Structure Of F65aY131C CARBONIC ANHYDRASE V,
Covalently Modified With 4-Chloromethylimidazole
Length = 248
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Query: 134 EGH-HP-DLHLVGWNNVQIEICTHAVGGLTENDFILAAKINRLDIHHLLRRKI 184
+GH +P +LHLV WN+ + E C A G EN + +L HH +K+
Sbjct: 89 DGHTYPAELHLVHWNSTKYENCKKASVG--ENGLAVIGVFLKLGAHHQALQKL 139
>pdb|4FL6|A Chain A, Crystal Structure Of The Complex Of The 3-Mbt Repeat
Domain Of L3mbtl3 And Unc1215
pdb|4FL6|B Chain B, Crystal Structure Of The Complex Of The 3-Mbt Repeat
Domain Of L3mbtl3 And Unc1215
Length = 332
Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 34/83 (40%), Gaps = 19/83 (22%)
Query: 79 LRPMAEDSAKHLMPKVVGWD--LVNENGILKLNRSLKVK---SFTKGLEL---------F 124
+ P + KH WD L N + R+ KVK F K ++L F
Sbjct: 210 ITPPGYPNVKHF-----SWDKYLEETNSLPAPARAFKVKPPHGFQKKMKLEVVDKRNPMF 264
Query: 125 KLVADVAEAEGHHPDLHLVGWNN 147
VA VA+ + H +H GWNN
Sbjct: 265 IRVATVADTDDHRVKVHFDGWNN 287
>pdb|3UT1|A Chain A, Crystal Structure Of The 3-Mbt Repeat Domain Of L3mbtl3
Length = 324
Score = 28.5 bits (62), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 34/83 (40%), Gaps = 19/83 (22%)
Query: 79 LRPMAEDSAKHLMPKVVGWD--LVNENGILKLNRSLKVK---SFTKGLEL---------F 124
+ P + KH WD L N + R+ KVK F K ++L F
Sbjct: 210 ITPPGYPNVKHF-----SWDKYLEETNSLPAPARAFKVKPPHGFQKKMKLEVVDKRNPMF 264
Query: 125 KLVADVAEAEGHHPDLHLVGWNN 147
VA VA+ + H +H GWNN
Sbjct: 265 IRVATVADTDDHRVKVHFDGWNN 287
>pdb|3E3R|A Chain A, Crystal Structure And Biochemical Characterization Of
Recombinant Human Calcyphosine Delineates A Novel
Ef-hand-containing Protein Family
pdb|3E3R|B Chain B, Crystal Structure And Biochemical Characterization Of
Recombinant Human Calcyphosine Delineates A Novel
Ef-hand-containing Protein Family
Length = 204
Score = 27.7 bits (60), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 16/27 (59%)
Query: 109 NRSLKVKSFTKGLELFKLVADVAEAEG 135
+RSL F +GL LV D AEAEG
Sbjct: 51 SRSLDADEFRQGLAKLGLVLDQAEAEG 77
>pdb|1WJQ|A Chain A, Solution Structure Of The Third Mbt Domain From Human
Kiaa1798 Protein
Length = 107
Score = 27.7 bits (60), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 108 LNRSLKVKSFTKGLELFKLVADVAEAEGHHPDLHLVGWNN 147
+ +K++ K +F VA VA+ + H +H GWNN
Sbjct: 14 FQKKMKLEVVDKRNPMFIRVATVADTDDHRVKVHFDGWNN 53
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.139 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,370,720
Number of Sequences: 62578
Number of extensions: 200870
Number of successful extensions: 582
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 554
Number of HSP's gapped (non-prelim): 21
length of query: 186
length of database: 14,973,337
effective HSP length: 93
effective length of query: 93
effective length of database: 9,153,583
effective search space: 851283219
effective search space used: 851283219
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 48 (23.1 bits)