Query 029876
Match_columns 186
No_of_seqs 145 out of 1071
Neff 5.3
Searched_HMMs 46136
Date Fri Mar 29 05:03:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029876.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029876hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2154 Pterin-4a-carbinolamin 100.0 7.7E-33 1.7E-37 209.5 12.7 97 79-178 3-99 (101)
2 PRK00823 phhB pterin-4-alpha-c 100.0 3.8E-32 8.2E-37 203.5 13.2 94 79-175 3-96 (97)
3 PF01329 Pterin_4a: Pterin 4 a 100.0 2.2E-32 4.7E-37 204.0 10.9 94 79-176 2-95 (95)
4 cd00914 PCD_DCoH_subfamily_b P 100.0 8E-28 1.7E-32 172.9 10.6 76 96-174 1-76 (76)
5 KOG4073 Pterin carbinolamine d 99.9 1.5E-27 3.2E-32 179.4 8.7 95 80-177 6-102 (104)
6 cd00913 PCD_DCoH_subfamily_a P 99.9 3.6E-27 7.8E-32 169.4 9.9 76 96-174 1-76 (76)
7 cd00488 PCD_DCoH PCD_DCoH: The 99.9 3.2E-27 7E-32 168.9 9.5 75 96-174 1-75 (75)
8 cd03074 PDI_b'_Calsequestrin_C 56.5 35 0.00077 26.8 5.4 44 97-143 15-58 (120)
9 PF11987 IF-2: Translation-ini 46.5 4.4 9.6E-05 30.8 -1.0 29 146-174 42-70 (108)
10 PF13549 ATP-grasp_5: ATP-gras 29.1 58 0.0013 27.7 3.1 63 79-150 146-208 (222)
11 PF13374 TPR_10: Tetratricopep 27.0 76 0.0017 18.1 2.5 25 115-139 16-42 (42)
12 cd03527 RuBisCO_small Ribulose 21.1 45 0.00097 25.3 0.8 62 79-140 9-80 (99)
13 cd08871 START_STARD10-like Lip 20.2 96 0.0021 25.6 2.7 26 77-102 2-30 (222)
No 1
>COG2154 Pterin-4a-carbinolamine dehydratase [Coenzyme metabolism]
Probab=100.00 E-value=7.7e-33 Score=209.49 Aligned_cols=97 Identities=35% Similarity=0.664 Sum_probs=91.5
Q ss_pred CCCCCHHHHHhhCCCCCCCeEeccCCcceEEEEEEeCChhHHHHHHHHHHHHHHHcCCCCcEEeeccCeEEEEEEeCCCC
Q 029876 79 LRPMAEDSAKHLMPKVVGWDLVNENGILKLNRSLKVKSFTKGLELFKLVADVAEAEGHHPDLHLVGWNNVQIEICTHAVG 158 (186)
Q Consensus 79 ~~~Lt~~ei~~~L~~l~gW~l~~~~g~~~L~R~F~F~~F~~a~~Fvn~VA~~AE~~~HHPdi~~~~y~~V~V~LtTH~~g 158 (186)
++.|+++++.+.|.+++||.+.+++ .+|+|+|+|+||.+|+.||++||.+||+.||||||++ .|++|+|+|+||++|
T Consensus 3 ~~~lt~~~~~~~l~~l~gW~l~~~~--~~l~r~f~FknF~~a~~F~~~vA~~Ae~~~HHPdi~~-~y~~V~vtltTHdag 79 (101)
T COG2154 3 ASKLTDEELAELLRALPGWELADDG--AKLTRTFKFKNFKQAIAFVNRVAEIAEKLNHHPDIEV-VYNRVTVTLTTHDAG 79 (101)
T ss_pred ccccCHHHHHHHhcCCCCCEEecCc--ceEEEEEEcCCHHHHHHHHHHHHHHHHHhCCCCCeEE-EeeeEEEEEEEccCC
Confidence 5679999999999999999999863 4899999999999999999999999999999999987 799999999999999
Q ss_pred CCCHHHHHHHHHHHHHhhcC
Q 029876 159 GLTENDFILAAKINRLDIHH 178 (186)
Q Consensus 159 GLT~~Df~LAakId~l~~~~ 178 (186)
|||++||+||++||+++...
T Consensus 80 glT~~D~~lA~~id~~~~~~ 99 (101)
T COG2154 80 GLTDLDFKLAAKIDALAKTE 99 (101)
T ss_pred CccHHHHHHHHHHHHHHhhh
Confidence 99999999999999998753
No 2
>PRK00823 phhB pterin-4-alpha-carbinolamine dehydratase; Validated
Probab=100.00 E-value=3.8e-32 Score=203.54 Aligned_cols=94 Identities=40% Similarity=0.738 Sum_probs=89.3
Q ss_pred CCCCCHHHHHhhCCCCCCCeEeccCCcceEEEEEEeCChhHHHHHHHHHHHHHHHcCCCCcEEeeccCeEEEEEEeCCCC
Q 029876 79 LRPMAEDSAKHLMPKVVGWDLVNENGILKLNRSLKVKSFTKGLELFKLVADVAEAEGHHPDLHLVGWNNVQIEICTHAVG 158 (186)
Q Consensus 79 ~~~Lt~~ei~~~L~~l~gW~l~~~~g~~~L~R~F~F~~F~~a~~Fvn~VA~~AE~~~HHPdi~~~~y~~V~V~LtTH~~g 158 (186)
+++|+++|++++|.+||||++.++ +.+|+|+|+|+||.++++||++||.+||++||||+|++ +|++|+|+|+||+++
T Consensus 3 ~~~Ls~~ei~~~l~~l~gW~~~~~--~~~l~r~f~f~~f~~a~~f~~~Va~~ae~~~HHP~i~~-~~~~V~v~l~Th~~~ 79 (97)
T PRK00823 3 AEKLSDEEIAELLPQLPGWTLVGD--RDAIERTFKFKNFNEAFAFMNRVAEIAEEEDHHPDWFN-VYNRVTVTLTTHDAG 79 (97)
T ss_pred CCCCCHHHHHHHhhcCCCCeEeCC--cCeEEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCCEEE-EcCEEEEEEEeCCCC
Confidence 578999999999999999999865 35899999999999999999999999999999999986 899999999999999
Q ss_pred CCCHHHHHHHHHHHHHh
Q 029876 159 GLTENDFILAAKINRLD 175 (186)
Q Consensus 159 GLT~~Df~LAakId~l~ 175 (186)
|||++||+||++||+++
T Consensus 80 glT~~D~~lA~~id~~~ 96 (97)
T PRK00823 80 GLTENDFILAAKIDALA 96 (97)
T ss_pred CCCHHHHHHHHHHHHhh
Confidence 99999999999999986
No 3
>PF01329 Pterin_4a: Pterin 4 alpha carbinolamine dehydratase; InterPro: IPR001533 DCoH is the dimerisation cofactor of hepatocyte nuclear factor 1 (HNF-1) that functions as both a transcriptional coactivator and a pterin dehydratase []. X-ray crystallographic studies have shown that the ligand binds at four sites per tetrameric enzyme, with little apparent conformational change in the protein.; GO: 0008124 4-alpha-hydroxytetrahydrobiopterin dehydratase activity, 0006729 tetrahydrobiopterin biosynthetic process; PDB: 2V6T_B 2V6U_A 2V6S_B 2EBB_A 1USM_A 1F93_B 1DCP_C 1DCH_E 3HXA_E 1DCO_C ....
Probab=99.98 E-value=2.2e-32 Score=203.99 Aligned_cols=94 Identities=41% Similarity=0.757 Sum_probs=82.7
Q ss_pred CCCCCHHHHHhhCCCCCCCeEeccCCcceEEEEEEeCChhHHHHHHHHHHHHHHHcCCCCcEEeeccCeEEEEEEeCCCC
Q 029876 79 LRPMAEDSAKHLMPKVVGWDLVNENGILKLNRSLKVKSFTKGLELFKLVADVAEAEGHHPDLHLVGWNNVQIEICTHAVG 158 (186)
Q Consensus 79 ~~~Lt~~ei~~~L~~l~gW~l~~~~g~~~L~R~F~F~~F~~a~~Fvn~VA~~AE~~~HHPdi~~~~y~~V~V~LtTH~~g 158 (186)
.++||++||+++|+++|||++.+ + ..|+|+|.|+||.+|++||++||.+||+++|||+|++ +|++|+|+|+||++|
T Consensus 2 ~~~Ls~~ei~~~L~~l~~W~~~~-~--~~l~r~f~f~~f~~a~~f~~~Va~~ae~~~HHP~i~~-~~~~V~v~l~Th~~~ 77 (95)
T PF01329_consen 2 APPLSEEEIAEALAELPGWKLDG-G--GRLERTFKFKDFAEAVEFVNRVAALAEEENHHPDISL-GYNRVTVTLTTHDAG 77 (95)
T ss_dssp -SB-THHHHHHHHHTSTTSEEET-S--SEEEEEEE-SSHHHHHHHHHHHHHHHHHHT---EEEE-ETTEEEEEE-BTTTT
T ss_pred CCCCCHHHHHHhhhcCcCCEECC-C--CcEEEEEEeCCHHHHHHHHHHHHHHHHHhCCCCCeEe-cCCcEEEEEEeCCCC
Confidence 57899999999999999999998 2 2899999999999999999999999999999999997 899999999999999
Q ss_pred CCCHHHHHHHHHHHHHhh
Q 029876 159 GLTENDFILAAKINRLDI 176 (186)
Q Consensus 159 GLT~~Df~LAakId~l~~ 176 (186)
|||++||+||++||+++.
T Consensus 78 glT~~D~~lA~~id~~~~ 95 (95)
T PF01329_consen 78 GLTEKDFILAARIDDLAE 95 (95)
T ss_dssp BBBHHHHHHHHHHHHHH-
T ss_pred CCCHHHHHHHHHHHHHhC
Confidence 999999999999999873
No 4
>cd00914 PCD_DCoH_subfamily_b PCD_DCoH: The bifunctional protein pterin-4alpha-carbinolamine dehydratase (PCD), also known as DCoH (dimerization cofactor of hepatocyte nuclear factor-1), is both a transcription activator and a metabolic enzyme. DCoH stimulates gene expression by associating with specific DNA binding proteins such as HNF-1alpha (hepatocyte nuclear factor-1) and Xenopus enhancer of rudimentary homologue (XERH). DCoH also catalyzes the dehydration of 4alpha- hydroxy- tetrahydrobiopterin (4alpha-OH-BH4) to quinoiddihydrobiopterin, a percursor of the phenylalanine hydroxylase cofactor BH4 (tetrahydrobiopterin). The DCoH homodimer has a saddle-shaped structure similar to that of TBP (TATA binding protein). Two DCoH proteins have been identifed in humans: DCoH1 and DCoH2. Mutations in human DCoH1 cause hyperphenylalaninemia. Loss of enzymic activity of DCoH in humans is associated with the depigmentation disorder vitiligo. DCoH1 has been reported to be overexpessed in colon
Probab=99.95 E-value=8e-28 Score=172.91 Aligned_cols=76 Identities=38% Similarity=0.607 Sum_probs=71.6
Q ss_pred CCeEeccCCcceEEEEEEeCChhHHHHHHHHHHHHHHHcCCCCcEEeeccCeEEEEEEeCCCCCCCHHHHHHHHHHHHH
Q 029876 96 GWDLVNENGILKLNRSLKVKSFTKGLELFKLVADVAEAEGHHPDLHLVGWNNVQIEICTHAVGGLTENDFILAAKINRL 174 (186)
Q Consensus 96 gW~l~~~~g~~~L~R~F~F~~F~~a~~Fvn~VA~~AE~~~HHPdi~~~~y~~V~V~LtTH~~gGLT~~Df~LAakId~l 174 (186)
||++.++. ..|+|+|+|++|.+|++||++||.+||++||||+|++ +|++|+|.|+||++||||++||+||++||++
T Consensus 1 gW~~~~~~--~~l~r~f~f~~f~~a~~f~~~va~~ae~~~HHPdi~~-~~~~V~v~l~Thd~~glT~~D~~lA~~id~~ 76 (76)
T cd00914 1 GWTLVDGR--DAIHKSFKFKDFNEAFGFMTRVALEAEKMNHHPEWFN-VYNKVDITLTTHDAGGLTERDIKLAKFIEKA 76 (76)
T ss_pred CCeEeCCC--CeEEEEEEeCCHHHHHHHHHHHHHHHHHhCCCCCEEE-eccEEEEEEEeCCCCCcCHHHHHHHHHHhcC
Confidence 79998752 2799999999999999999999999999999999986 8999999999999999999999999999974
No 5
>KOG4073 consensus Pterin carbinolamine dehydratase PCBD/dimerization cofactor of HNF1 [Transcription]
Probab=99.95 E-value=1.5e-27 Score=179.39 Aligned_cols=95 Identities=35% Similarity=0.591 Sum_probs=82.2
Q ss_pred CCCCHHHHHhhCCC--CCCCeEeccCCcceEEEEEEeCChhHHHHHHHHHHHHHHHcCCCCcEEeeccCeEEEEEEeCCC
Q 029876 80 RPMAEDSAKHLMPK--VVGWDLVNENGILKLNRSLKVKSFTKGLELFKLVADVAEAEGHHPDLHLVGWNNVQIEICTHAV 157 (186)
Q Consensus 80 ~~Lt~~ei~~~L~~--l~gW~l~~~~g~~~L~R~F~F~~F~~a~~Fvn~VA~~AE~~~HHPdi~~~~y~~V~V~LtTH~~ 157 (186)
..|+..|-...+.. ..||.+..+++ +|.|+|.|+||.+|+.||.+||..||++||||+|+++ ||+|.|+|+||++
T Consensus 6 ~~~~~~er~~~ll~~~~agW~l~~~rd--~i~kef~fKdF~~a~~FmtrVal~Ae~~~HHPew~nv-ynkV~itL~THd~ 82 (104)
T KOG4073|consen 6 HRLNESERKLKLLTLKAAGWDLVEGRD--AIFKEFRFKDFNQAFGFMTRVALRAEKLGHHPEWFNV-YNKVKITLSTHDI 82 (104)
T ss_pred hhhhhhHHhccchhhhhcCCCcccCcc--ceeeEEEeecHHHHHHHHHHHHHHHHHhcCCchhhee-eeeeEEEEEeccc
Confidence 44555544433332 35999987654 8999999999999999999999999999999999985 9999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhhc
Q 029876 158 GGLTENDFILAAKINRLDIH 177 (186)
Q Consensus 158 gGLT~~Df~LAakId~l~~~ 177 (186)
||||++||+||++||.++.+
T Consensus 83 ggLse~Dv~lA~~Ie~~a~~ 102 (104)
T KOG4073|consen 83 GGLSENDVKLAKFIESLAVE 102 (104)
T ss_pred CCCCHHHHHHHHHHHHHHHh
Confidence 99999999999999998764
No 6
>cd00913 PCD_DCoH_subfamily_a PCD_DCoH: The bifunctional protein pterin-4alpha-carbinolamine dehydratase (PCD), also known as DCoH (dimerization cofactor of hepatocyte nuclear factor-1), is both a transcription activator and a metabolic enzyme. DCoH stimulates gene expression by associating with specific DNA binding proteins such as HNF-1alpha (hepatocyte nuclear factor-1) and Xenopus enhancer of rudimentary homologue (XERH). DCoH also catalyzes the dehydration of 4alpha- hydroxy- tetrahydrobiopterin (4alpha-OH-BH4) to quinoiddihydrobiopterin, a percursor of the phenylalanine hydroxylase cofactor BH4 (tetrahydrobiopterin). The DCoH homodimer has a saddle-shaped structure similar to that of TBP (TATA binding protein).
Probab=99.94 E-value=3.6e-27 Score=169.38 Aligned_cols=76 Identities=54% Similarity=1.052 Sum_probs=71.5
Q ss_pred CCeEeccCCcceEEEEEEeCChhHHHHHHHHHHHHHHHcCCCCcEEeeccCeEEEEEEeCCCCCCCHHHHHHHHHHHHH
Q 029876 96 GWDLVNENGILKLNRSLKVKSFTKGLELFKLVADVAEAEGHHPDLHLVGWNNVQIEICTHAVGGLTENDFILAAKINRL 174 (186)
Q Consensus 96 gW~l~~~~g~~~L~R~F~F~~F~~a~~Fvn~VA~~AE~~~HHPdi~~~~y~~V~V~LtTH~~gGLT~~Df~LAakId~l 174 (186)
||++.+++ .+|+|+|+|++|.+|++||++||.+||++||||+|++ +|++|+|+|+||+++|||++||+||++||++
T Consensus 1 gW~~~~~~--~~l~r~f~f~~f~~a~~f~~~va~~ae~~~HHP~i~~-~~~~V~v~l~Th~~~glT~~D~~lA~~id~l 76 (76)
T cd00913 1 GWELADDG--LKLERTFRFKNFVEALEFVNAVGEIAEAEGHHPDLSL-GWGRVRVTWWTHSIGGLSENDFIMAAKIDAL 76 (76)
T ss_pred CCcCcCCC--CeEEEEEEcCCHHHHHHHHHHHHHHHHHcCCCCCEEE-eccEEEEEEEeCCCCCCCHHHHHHHHHHhcC
Confidence 79997752 3899999999999999999999999999999999986 8999999999999999999999999999974
No 7
>cd00488 PCD_DCoH PCD_DCoH: The bifunctional protein pterin-4alpha-carbinolamine dehydratase (PCD), also known as DCoH (dimerization cofactor of hepatocyte nuclear factor-1), is both a transcription activator and a metabolic enzyme. DCoH stimulates gene expression by associating with specific DNA binding proteins such as HNF-1alpha (hepatocyte nuclear factor-1) and Xenopus enhancer of rudimentary homologue (XERH). DCoH also catalyzes the dehydration of 4alpha- hydroxy- tetrahydrobiopterin (4alpha-OH-BH4) to quinoiddihydrobiopterin, a percursor of the phenylalanine hydroxylase cofactor BH4 (tetrahydrobiopterin). The DCoH homodimer has a saddle-shaped structure similar to that of TBP (TATA binding protein). Two DCoH proteins have been identifed in humans: DCoH1 and DCoH2. Mutations in human DCoH1 cause hyperphenylalaninemia. Loss of enzymic activity of DCoH in humans is associated with the depigmentation disorder vitiligo. DCoH1 has been reported to be overexpessed in colon cancer carc
Probab=99.94 E-value=3.2e-27 Score=168.95 Aligned_cols=75 Identities=48% Similarity=0.818 Sum_probs=70.8
Q ss_pred CCeEeccCCcceEEEEEEeCChhHHHHHHHHHHHHHHHcCCCCcEEeeccCeEEEEEEeCCCCCCCHHHHHHHHHHHHH
Q 029876 96 GWDLVNENGILKLNRSLKVKSFTKGLELFKLVADVAEAEGHHPDLHLVGWNNVQIEICTHAVGGLTENDFILAAKINRL 174 (186)
Q Consensus 96 gW~l~~~~g~~~L~R~F~F~~F~~a~~Fvn~VA~~AE~~~HHPdi~~~~y~~V~V~LtTH~~gGLT~~Df~LAakId~l 174 (186)
||++.++ .+|+|+|+|++|.+|++||++||.+||++||||+|++ +|++|+|+|+||+++|||++||+||++||++
T Consensus 1 gW~~~~~---~~l~r~f~f~~f~~a~~f~~~va~~ae~~~HHP~i~~-~~~~V~v~l~Th~~~glt~~D~~lA~~id~~ 75 (75)
T cd00488 1 GWELADG---DALERTFKFKDFKEAIAFVNRVAELAEALNHHPDISN-VYNKVTVTLTTHDAGGLTENDFILAAKIDAL 75 (75)
T ss_pred CCcCCCC---CcEEEEEEcCCHHHHHHHHHHHHHHHHHcCCCCCEEE-eeeEEEEEEEeCCCCCCCHHHHHHHHHHhcC
Confidence 7999771 2899999999999999999999999999999999987 8999999999999999999999999999974
No 8
>cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin
Probab=56.54 E-value=35 Score=26.79 Aligned_cols=44 Identities=20% Similarity=0.436 Sum_probs=34.3
Q ss_pred CeEeccCCcceEEEEEEeCChhHHHHHHHHHHHHHHHcCCCCcEEee
Q 029876 97 WDLVNENGILKLNRSLKVKSFTKGLELFKLVADVAEAEGHHPDLHLV 143 (186)
Q Consensus 97 W~l~~~~g~~~L~R~F~F~~F~~a~~Fvn~VA~~AE~~~HHPdi~~~ 143 (186)
|+-..+ | .+-..|.=..-.++.+|+.-|..+|++..|+|+++++
T Consensus 15 wedd~~-g--~~IvAFaee~dpdG~eFl~ilk~vA~~nt~np~LsiI 58 (120)
T cd03074 15 WEDDLD-G--IHIVAFAEEEDPDGYEFLEILKEVARDNTDNPDLSII 58 (120)
T ss_pred hhcccC-C--ceEEEEeccCCccHHHHHHHHHHHHHhcCcCCCceEE
Confidence 755444 3 4555666666679999999999999999999998864
No 9
>PF11987 IF-2: Translation-initiation factor 2; InterPro: IPR023115 Initiation factor 2 (IF-2) is one of the three factors required for the initiation of protein biosynthesis in bacteria. IF-2 promotes the GTP-dependent binding of the initiator tRNA to the small subunit of the ribosome. IF-2 is a protein of about 70 to 95 kDa that contains a central GTP-binding domain flanked by a highly variable N-terminal domain and a more conserved C-terminal domain. Some members of this group undergo protein self splicing that involves a post-translational excision of the intein followed by peptide ligation. The function of IF-2 in facilitating the proper binding of initiator methionyl-tRNA to the ribosomal P site appears to be universally conserved, with an IF-2 homologue (aIF-2) present in archaea bacteria [] Methanopyrus kandleri. This entry represents the domain 3 of IF-2. It consists of a alpha/beta/alpha structure with a core formed by a parallel beta-sheet of 4 strands [].; PDB: 1Z9B_A 1ZO1_I 3IZY_P 1G7R_A 1G7S_A 1G7T_A.
Probab=46.49 E-value=4.4 Score=30.83 Aligned_cols=29 Identities=38% Similarity=0.552 Sum_probs=24.0
Q ss_pred CeEEEEEEeCCCCCCCHHHHHHHHHHHHH
Q 029876 146 NNVQIEICTHAVGGLTENDFILAAKINRL 174 (186)
Q Consensus 146 ~~V~V~LtTH~~gGLT~~Df~LAakId~l 174 (186)
..|.+.+-...+|.+|+.|+.||...+.+
T Consensus 42 ~~v~i~Ii~~~VG~it~sDI~~A~~~~a~ 70 (108)
T PF11987_consen 42 DEVKIKIIHAGVGPITESDIELASASNAI 70 (108)
T ss_dssp SSSCEEESEEEESSBHHHHHHHHHHHC-E
T ss_pred ccccccEEEeeCCCCCHHHHHHHHhhCCE
Confidence 45677888889999999999999987754
No 10
>PF13549 ATP-grasp_5: ATP-grasp domain; PDB: 1WR2_A.
Probab=29.09 E-value=58 Score=27.71 Aligned_cols=63 Identities=16% Similarity=0.318 Sum_probs=39.0
Q ss_pred CCCCCHHHHHhhCCCCCCCeEeccCCcceEEEEEEeCChhHHHHHHHHHHHHHHHcCCCCcEEeeccCeEEE
Q 029876 79 LRPMAEDSAKHLMPKVVGWDLVNENGILKLNRSLKVKSFTKGLELFKLVADVAEAEGHHPDLHLVGWNNVQI 150 (186)
Q Consensus 79 ~~~Lt~~ei~~~L~~l~gW~l~~~~g~~~L~R~F~F~~F~~a~~Fvn~VA~~AE~~~HHPdi~~~~y~~V~V 150 (186)
.+|||++++.+++.++..|++..+ .|-..=-|.....+.+.+++.++.+ ||+|.-.+-|-|.|
T Consensus 146 l~Pl~~~~a~~mi~~l~~~~lL~G------~RG~p~~d~~al~~~l~~ls~l~~~---~p~I~eldiNPl~v 208 (222)
T PF13549_consen 146 LPPLSEADAREMIRELRAYPLLRG------YRGRPPADLDALADLLVRLSQLAAD---LPEIAELDINPLIV 208 (222)
T ss_dssp ESS--HHHHHHHHHTSTTHHHHH-------------B-HHHHHHHHHHHHHHHHH---TTTEEEEEEEEEEE
T ss_pred eCCCCHHHHHHHHHHHHhHHhhcc------cCCCCCcCHHHHHHHHHHHHHHHHh---CCCEEEEEeeceEE
Confidence 578999999999999999988754 1222224666777777777777774 68886544444433
No 11
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=27.00 E-value=76 Score=18.06 Aligned_cols=25 Identities=28% Similarity=0.518 Sum_probs=14.3
Q ss_pred CChhHHHHHHHHHHHHHHHc--CCCCc
Q 029876 115 KSFTKGLELFKLVADVAEAE--GHHPD 139 (186)
Q Consensus 115 ~~F~~a~~Fvn~VA~~AE~~--~HHPd 139 (186)
.+|.+|..+..++-.+.++. ..|||
T Consensus 16 g~~~~A~~~~~~al~~~~~~~G~~Hpd 42 (42)
T PF13374_consen 16 GRYEEALELLEEALEIRERLLGPDHPD 42 (42)
T ss_dssp T-HHHHHHHHHHHHHHH----------
T ss_pred hhcchhhHHHHHHHHHHHHHhcccccC
Confidence 57899999999988888863 56664
No 12
>cd03527 RuBisCO_small Ribulose bisphosphate carboxylase/oxygenase (Rubisco), small subunit. Rubisco is a bifunctional enzyme catalyzes the initial steps of two opposing metabolic pathways: photosynthetic carbon fixation and the competing process of photorespiration. Rubisco Form I, present in plants and green algae, is composed of eight large and eight small subunits. The nearly identical small subunits are encoded by a family of nuclear genes. After translation, the small subunits are translocated across the chloroplast membrane, where an N-terminal signal peptide is cleaved off. While the large subunits contain the catalytic activities, it has been shown that the small subunits are important for catalysis by enhancing the catalytic rate through inducing conformational changes in the large subunits.
Probab=21.15 E-value=45 Score=25.33 Aligned_cols=62 Identities=15% Similarity=0.250 Sum_probs=35.1
Q ss_pred CCCCCHHHHHhhCCCC--CCCeEecc--CCc---ceEEEEEEeCCh--hHHHHHHHHHHHH-HHHcCCCCcE
Q 029876 79 LRPMAEDSAKHLMPKV--VGWDLVNE--NGI---LKLNRSLKVKSF--TKGLELFKLVADV-AEAEGHHPDL 140 (186)
Q Consensus 79 ~~~Lt~~ei~~~L~~l--~gW~l~~~--~g~---~~L~R~F~F~~F--~~a~~Fvn~VA~~-AE~~~HHPdi 140 (186)
.++||++||.+.+..+ .||.+--+ +.. ..-...|+..-| .++.+.|..|.+. .+--|||-.+
T Consensus 9 lp~lt~~~i~~QI~yll~qG~~~~lE~ad~~~~~~~yW~mwklP~f~~~d~~~Vl~ei~~C~~~~p~~YVRl 80 (99)
T cd03527 9 LPPLTDEQIAKQIDYIISNGWAPCLEFTEPEHYDNRYWTMWKLPMFGCTDPAQVLREIEACRKAYPDHYVRV 80 (99)
T ss_pred CCCCCHHHHHHHHHHHHhCCCEEEEEcccCCCCCCCEEeeccCCCCCCCCHHHHHHHHHHHHHHCCCCeEEE
Confidence 5789999888776654 59987633 100 122333345555 2456666666655 3335555444
No 13
>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD10 (also known as CGI-52, PTCP-like, and SDCCAG28). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD10 binds phophatidylcholine and phosphatidylethanolamine. This protein is widely expressed and is synthesized constitutively in many organs. It may function in the liver in the export of phospholipids into bile. It is concentrated in the sperm flagellum, and may play a role in energy metabolism. In the mammary gland it may participate in the enrichment of lipids in milk, and be a potential marker of differentiation. Its expression is induced in this gland during gestation and lactation. It is overe
Probab=20.19 E-value=96 Score=25.60 Aligned_cols=26 Identities=15% Similarity=0.313 Sum_probs=19.4
Q ss_pred CCCCCCCHHHHHhhCCC---CCCCeEecc
Q 029876 77 KDLRPMAEDSAKHLMPK---VVGWDLVNE 102 (186)
Q Consensus 77 ~~~~~Lt~~ei~~~L~~---l~gW~l~~~ 102 (186)
+..+|.|+++.+.+++- -+||++..+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~W~~~~~ 30 (222)
T cd08871 2 GEVRLPTDADFEEFKKLCDSTDGWKLKYN 30 (222)
T ss_pred CeecCCCHHHHHHHHHHhcCCCCcEEEEc
Confidence 46789999988876654 368998844
Done!