Query 029876
Match_columns 186
No_of_seqs 145 out of 1071
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 07:40:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029876.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029876hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3jst_A Putative pterin-4-alpha 100.0 4.8E-34 1.6E-38 213.1 11.1 95 79-176 3-97 (97)
2 3hxa_A Pterin-4-alpha-carbinol 100.0 9.2E-34 3.1E-38 214.2 11.3 97 77-176 3-101 (104)
3 1ru0_A DCOH-like protein dcohm 100.0 8.1E-34 2.8E-38 214.7 10.5 99 74-176 3-103 (105)
4 2ebb_A Pterin-4-alpha-carbinol 100.0 2.3E-33 7.8E-38 211.0 11.8 94 80-177 1-94 (101)
5 2v6u_A Pterin-4A-carbinolamine 100.0 2.3E-33 7.8E-38 211.9 11.0 95 79-176 6-100 (104)
6 1usm_A DCOH, hepatocyte nuclea 100.0 3.3E-30 1.1E-34 186.1 10.4 79 95-176 1-79 (80)
7 1z9b_A Translation initiation 50.5 5.3 0.00018 30.8 1.2 29 146-174 67-95 (135)
8 3lqv_P Splicing factor 3B subu 44.9 14 0.00047 22.8 2.2 19 79-99 20-38 (39)
9 4hti_A Receptor-type tyrosine- 35.1 51 0.0017 24.1 4.4 53 113-167 19-72 (99)
10 1uw4_A UPF3X; nonsense mediate 25.6 1.6E+02 0.0054 20.7 5.6 48 80-127 11-65 (91)
11 2fho_A Spliceosomal protein SF 24.4 32 0.0011 22.0 1.4 21 79-101 19-39 (47)
No 1
>3jst_A Putative pterin-4-alpha-carbinolamine dehydratase; lyase, structural genomics, seattle structural genomics CENT infectious disease, ssgcid; 2.10A {Brucella melitensis} SCOP: d.74.1.0
Probab=100.00 E-value=4.8e-34 Score=213.13 Aligned_cols=95 Identities=27% Similarity=0.448 Sum_probs=89.5
Q ss_pred CCCCCHHHHHhhCCCCCCCeEeccCCcceEEEEEEeCChhHHHHHHHHHHHHHHHcCCCCcEEeeccCeEEEEEEeCCCC
Q 029876 79 LRPMAEDSAKHLMPKVVGWDLVNENGILKLNRSLKVKSFTKGLELFKLVADVAEAEGHHPDLHLVGWNNVQIEICTHAVG 158 (186)
Q Consensus 79 ~~~Lt~~ei~~~L~~l~gW~l~~~~g~~~L~R~F~F~~F~~a~~Fvn~VA~~AE~~~HHPdi~~~~y~~V~V~LtTH~~g 158 (186)
+++||++||+++|.++|||++.++ ..+|+|+|+|+||.+|++||++||.+||++||||+|++ +||+|+|+|+||++|
T Consensus 3 ~~~Ls~~ei~~~L~~l~gW~~~~~--~~~l~r~f~f~~f~~a~~f~~~Va~~Ae~~~HHPdi~~-~y~~V~v~l~THd~g 79 (97)
T 3jst_A 3 RNRLTESEMNEALRALDGWQKVDG--REAITRSFKFKDFSTAFGFMAQAALYAEKLDHHPEWFN-AYNRVDVTLATHSEN 79 (97)
T ss_dssp CSCCCHHHHHHHHHTSTTCEECTT--SSCEEEEEECSSHHHHHHHHHHHHHHHHHHTCCCEEEE-ETTEEEEEECBGGGT
T ss_pred CCCCCHHHHHHHhhcCCCCeEeCC--CCeEEEEEEeCCHHHHHHHHHHHHHHHHHhCCCCeEEE-eCCEEEEEEEeCCCC
Confidence 478999999999999999999864 24899999999999999999999999999999999987 799999999999999
Q ss_pred CCCHHHHHHHHHHHHHhh
Q 029876 159 GLTENDFILAAKINRLDI 176 (186)
Q Consensus 159 GLT~~Df~LAakId~l~~ 176 (186)
|||++||+||++||+++.
T Consensus 80 GlT~~D~~lA~~id~la~ 97 (97)
T 3jst_A 80 GVTELDIKMARKMNAIAG 97 (97)
T ss_dssp BCCHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHhC
Confidence 999999999999999863
No 2
>3hxa_A Pterin-4-alpha-carbinolamine dehydratase; alpha and beta structure, lyase, nucleus, tetrahydrobiopteri biosynthesis; 1.80A {Rattus norvegicus} SCOP: d.74.1.1 PDB: 1dco_A 1dch_A 1dcp_A* 1f93_A
Probab=100.00 E-value=9.2e-34 Score=214.19 Aligned_cols=97 Identities=27% Similarity=0.510 Sum_probs=90.1
Q ss_pred CCCCCCCHHHHHhhCCCC--CCCeEeccCCcceEEEEEEeCChhHHHHHHHHHHHHHHHcCCCCcEEeeccCeEEEEEEe
Q 029876 77 KDLRPMAEDSAKHLMPKV--VGWDLVNENGILKLNRSLKVKSFTKGLELFKLVADVAEAEGHHPDLHLVGWNNVQIEICT 154 (186)
Q Consensus 77 ~~~~~Lt~~ei~~~L~~l--~gW~l~~~~g~~~L~R~F~F~~F~~a~~Fvn~VA~~AE~~~HHPdi~~~~y~~V~V~LtT 154 (186)
++.++||++||+++|.++ |||++.+++ .+|+|+|+|+||.+|++||++||.+||++||||+|++ +|++|+|+|+|
T Consensus 3 ~~~~~Ls~~ei~~~L~~L~~~gW~~~~~~--~~l~r~f~F~~f~~a~~F~~~Va~~AE~~~HHPdi~~-~y~~V~v~l~T 79 (104)
T 3hxa_A 3 GKAHRLSAEERDQLLPNLRAVGWNELEGR--DAIFKQFHFKDFNRAFGFMSRVALQAEKLDHHPEWFN-VYNKVHITLST 79 (104)
T ss_dssp --CCCCCHHHHHHHSHHHHTTTCEECSSS--SCEEEEEECSSHHHHHHHHHHHHHHHHHHTCCCEEEE-ETTEEEEEECB
T ss_pred CCCccCCHHHHHHHHhhCCCCCCEEecCC--CeEEEEEEeCCHHHHHHHHHHHHHHHHHhCCCCeEEE-eCCEEEEEEEe
Confidence 357899999999999999 899998653 3899999999999999999999999999999999987 79999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHhh
Q 029876 155 HAVGGLTENDFILAAKINRLDI 176 (186)
Q Consensus 155 H~~gGLT~~Df~LAakId~l~~ 176 (186)
|++||||++||+||++||+++.
T Consensus 80 Hd~gGlT~~D~~lA~~id~la~ 101 (104)
T 3hxa_A 80 HECAGLSERDINLASFIEQVAV 101 (104)
T ss_dssp TTTTBCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999986
No 3
>1ru0_A DCOH-like protein dcohm; alpha and beta structure, lyase; 1.60A {Mus musculus} SCOP: d.74.1.1
Probab=100.00 E-value=8.1e-34 Score=214.73 Aligned_cols=99 Identities=28% Similarity=0.495 Sum_probs=90.6
Q ss_pred CCCCCCCCCCHHHHHhhCCCC--CCCeEeccCCcceEEEEEEeCChhHHHHHHHHHHHHHHHcCCCCcEEeeccCeEEEE
Q 029876 74 CDTKDLRPMAEDSAKHLMPKV--VGWDLVNENGILKLNRSLKVKSFTKGLELFKLVADVAEAEGHHPDLHLVGWNNVQIE 151 (186)
Q Consensus 74 ~~~~~~~~Lt~~ei~~~L~~l--~gW~l~~~~g~~~L~R~F~F~~F~~a~~Fvn~VA~~AE~~~HHPdi~~~~y~~V~V~ 151 (186)
|++ +.++||++|++++|.++ +||++.+++ .+|+|+|+|+||.+|++||++||.+||+++|||+|++ +|++|+|+
T Consensus 3 ~~~-~~~~Ls~~ei~~~L~~l~~~gW~~~~~~--~~i~r~f~F~~f~~a~~F~~~Va~~Ae~~~HHPdi~~-~y~~V~v~ 78 (105)
T 1ru0_A 3 MSS-DAQWLTAEERDQLIPGLKAAGWSELSER--DAIYKEFSFKNFNQAFGFMSRVALQAEKMNHHPEWFN-VYNKVQIT 78 (105)
T ss_dssp ----CCSBCCHHHHHHHHHHHHHTTCEECSSS--SCEEEEEECSSHHHHHHHHHHHHHHHHHHTCCCEEEE-ETTEEEEE
T ss_pred CCC-CCCCCCHHHHHHHHHhCCCCCCeEECCC--CeEEEEEEeCCHHHHHHHHHHHHHHHHHhCCCCcEEE-eCCEEEEE
Confidence 443 67899999999999999 899998653 3799999999999999999999999999999999987 89999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHhh
Q 029876 152 ICTHAVGGLTENDFILAAKINRLDI 176 (186)
Q Consensus 152 LtTH~~gGLT~~Df~LAakId~l~~ 176 (186)
|+||++||||++||+||++||+++.
T Consensus 79 l~THd~gGlt~~D~~lA~~id~l~~ 103 (105)
T 1ru0_A 79 LTSHDCGGLTKRDVKLAQFIEKAAA 103 (105)
T ss_dssp ECBTTTTBCBHHHHHHHHHHHHHHT
T ss_pred EEeCCCCCCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999999984
No 4
>2ebb_A Pterin-4-alpha-carbinolamine dehydratase; coenzyme biosyntheses, GK1984, structural genomics, NPPSFA; 1.60A {Geobacillus kaustophilus}
Probab=100.00 E-value=2.3e-33 Score=211.03 Aligned_cols=94 Identities=22% Similarity=0.498 Sum_probs=88.9
Q ss_pred CCCCHHHHHhhCCCCCCCeEeccCCcceEEEEEEeCChhHHHHHHHHHHHHHHHcCCCCcEEeeccCeEEEEEEeCCCCC
Q 029876 80 RPMAEDSAKHLMPKVVGWDLVNENGILKLNRSLKVKSFTKGLELFKLVADVAEAEGHHPDLHLVGWNNVQIEICTHAVGG 159 (186)
Q Consensus 80 ~~Lt~~ei~~~L~~l~gW~l~~~~g~~~L~R~F~F~~F~~a~~Fvn~VA~~AE~~~HHPdi~~~~y~~V~V~LtTH~~gG 159 (186)
.+||++||+++|.++|||++.++ . +|+|+|+|+||.+|++||++||.+||++||||+|++ +|++|+|+|+||++||
T Consensus 1 ~~Ls~~ei~~~L~~l~gW~~~~~--~-~i~r~f~F~~f~~a~~F~~~Va~~Ae~~~HHPdi~~-~y~~V~v~l~THd~gG 76 (101)
T 2ebb_A 1 MRLTEEEVQALLEKADGWKLADE--R-WIVKKYRFQDYLQGIEFVRRIAAISENANHHPFISI-DYKLITVKLSSWRAKG 76 (101)
T ss_dssp CCCCHHHHHHHHHTSTTCEEETT--T-EEEEEEECSSHHHHHHHHHHHHHHHHHTTCCCEEEE-ETTEEEEEECBTTTTB
T ss_pred CCCCHHHHHHHhhcCCCCeECCC--C-CEEEEEEeCCHHHHHHHHHHHHHHHHHhCCCCcEEE-eCCEEEEEEEeCCCCC
Confidence 36999999999999999999876 2 599999999999999999999999999999999987 8999999999999999
Q ss_pred CCHHHHHHHHHHHHHhhc
Q 029876 160 LTENDFILAAKINRLDIH 177 (186)
Q Consensus 160 LT~~Df~LAakId~l~~~ 177 (186)
||++||+||++||+++..
T Consensus 77 lt~~D~~lA~~id~l~~~ 94 (101)
T 2ebb_A 77 LTKLDFDLAKQYDEVYNQ 94 (101)
T ss_dssp CCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHH
Confidence 999999999999999864
No 5
>2v6u_A Pterin-4A-carbinolamine dehydratase; lyase, enzyme; 1.6A {Toxoplasma gondii} PDB: 2v6s_A 2v6t_A*
Probab=100.00 E-value=2.3e-33 Score=211.93 Aligned_cols=95 Identities=27% Similarity=0.416 Sum_probs=90.1
Q ss_pred CCCCCHHHHHhhCCCCCCCeEeccCCcceEEEEEEeCChhHHHHHHHHHHHHHHHcCCCCcEEeeccCeEEEEEEeCCCC
Q 029876 79 LRPMAEDSAKHLMPKVVGWDLVNENGILKLNRSLKVKSFTKGLELFKLVADVAEAEGHHPDLHLVGWNNVQIEICTHAVG 158 (186)
Q Consensus 79 ~~~Lt~~ei~~~L~~l~gW~l~~~~g~~~L~R~F~F~~F~~a~~Fvn~VA~~AE~~~HHPdi~~~~y~~V~V~LtTH~~g 158 (186)
.++||++||+++|.++|||++.++ +.+|+|+|+|+||.+|++||++||.+||++||||+|++ +||+|+|+|+||++|
T Consensus 6 ~~~Ls~~ei~~~L~~l~gW~~~~~--~~~i~r~f~F~~f~~a~~F~~~Va~~Ae~~~HHPdi~~-~y~~V~v~l~THd~g 82 (104)
T 2v6u_A 6 RLAANSARLLQLHKTVPQWHLTDG--HLSIKRKFQFSDFNEAWGFMSRVALYADKVDHHPNWYN-VYNTVDVELSTHDAA 82 (104)
T ss_dssp CCCTTCHHHHHHHTTSTTSEECGG--GCCEEEEEECSSHHHHHHHHHHHHHHHHHHTCCCEEEE-ETTEEEEEECBGGGT
T ss_pred CCCCCHHHHHHHhhcCCCCeEeCC--cCeEEEEEEeCCHHHHHHHHHHHHHHHHHhCCCCcEEE-eCCEEEEEEEeCCCC
Confidence 478999999999999999999865 24799999999999999999999999999999999987 899999999999999
Q ss_pred CCCHHHHHHHHHHHHHhh
Q 029876 159 GLTENDFILAAKINRLDI 176 (186)
Q Consensus 159 GLT~~Df~LAakId~l~~ 176 (186)
|||++||+||++||+++.
T Consensus 83 GlT~~D~~lA~~id~l~~ 100 (104)
T 2v6u_A 83 GLTEKDFALAKFMDDAAK 100 (104)
T ss_dssp BCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHH
Confidence 999999999999999985
No 6
>1usm_A DCOH, hepatocyte nuclear factor 1-alpha; transcriptional stimulator, dimerization cofactor, dehydratase, 4A-carbinolamine dehydratase; 1.2A {Thermus thermophilus} SCOP: d.74.1.1 PDB: 1uso_A
Probab=99.97 E-value=3.3e-30 Score=186.14 Aligned_cols=79 Identities=30% Similarity=0.564 Sum_probs=72.9
Q ss_pred CCCeEeccCCcceEEEEEEeCChhHHHHHHHHHHHHHHHcCCCCcEEeeccCeEEEEEEeCCCCCCCHHHHHHHHHHHHH
Q 029876 95 VGWDLVNENGILKLNRSLKVKSFTKGLELFKLVADVAEAEGHHPDLHLVGWNNVQIEICTHAVGGLTENDFILAAKINRL 174 (186)
Q Consensus 95 ~gW~l~~~~g~~~L~R~F~F~~F~~a~~Fvn~VA~~AE~~~HHPdi~~~~y~~V~V~LtTH~~gGLT~~Df~LAakId~l 174 (186)
|||++.++ +.+|+|+|+|+||.+|++||++||.+||++||||+|++ +|++|+|+|+||++||||++||+||++||++
T Consensus 1 ~gW~~~~~--~~~i~r~f~F~~f~~a~~F~~~Va~~Ae~~~HHPdi~~-~y~~V~v~l~THd~gGlt~~D~~lA~~id~l 77 (80)
T 1usm_A 1 MDWEEREN--LKRLVKTFAFPNFREALDFANRVGALAERENHHPRLTV-EWGRVTVEWWTHSAGGVTEKDREMARLTDAL 77 (80)
T ss_dssp CCCEEC-----CCEEEEEECSSHHHHHHHHHHHHHHHHHHTCCCEEEE-ETTEEEEEECBTTTTBCCHHHHHHHHHHHHT
T ss_pred CCCeEeCC--ccEEEEEEEeCCHHHHHHHHHHHHHHHHHhCCCCcEEE-eCCEEEEEEEeCCCCCCCHHHHHHHHHHHHH
Confidence 79998765 35799999999999999999999999999999999987 8999999999999999999999999999998
Q ss_pred hh
Q 029876 175 DI 176 (186)
Q Consensus 175 ~~ 176 (186)
+.
T Consensus 78 ~~ 79 (80)
T 1usm_A 78 LQ 79 (80)
T ss_dssp TC
T ss_pred hh
Confidence 74
No 7
>1z9b_A Translation initiation factor IF-2; protein synthesis translation intiation IF2 FMet-tRNA structure; NMR {Geobacillus stearothermophilus}
Probab=50.51 E-value=5.3 Score=30.77 Aligned_cols=29 Identities=38% Similarity=0.572 Sum_probs=24.7
Q ss_pred CeEEEEEEeCCCCCCCHHHHHHHHHHHHH
Q 029876 146 NNVQIEICTHAVGGLTENDFILAAKINRL 174 (186)
Q Consensus 146 ~~V~V~LtTH~~gGLT~~Df~LAakId~l 174 (186)
..|.|.+-...+|++|+.|+.||...+++
T Consensus 67 ~ev~i~Ii~~gVG~ItesDV~lA~as~ai 95 (135)
T 1z9b_A 67 EGVRVKIIHAAVGAITESDISLATASNAI 95 (135)
T ss_dssp SSCEEEEEEEEESCBCHHHHHHHHHHTCE
T ss_pred CceEEEEEeecCCCCCHHHHHHHHHcCCE
Confidence 45778888889999999999999988654
No 8
>3lqv_P Splicing factor 3B subunit 1; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} PDB: 2f9d_P 2f9j_P
Probab=44.88 E-value=14 Score=22.84 Aligned_cols=19 Identities=21% Similarity=0.709 Sum_probs=15.8
Q ss_pred CCCCCHHHHHhhCCCCCCCeE
Q 029876 79 LRPMAEDSAKHLMPKVVGWDL 99 (186)
Q Consensus 79 ~~~Lt~~ei~~~L~~l~gW~l 99 (186)
-.|||++|+..+|. +|.++
T Consensus 20 NrpltDEeLD~mLP--~GYkI 38 (39)
T 3lqv_P 20 NRPLSDEELDAMFP--EGYKV 38 (39)
T ss_dssp TCCCCHHHHHHTCC--SSEEE
T ss_pred cCCCCHHHHHHhCC--CCccc
Confidence 37899999999998 47765
No 9
>4hti_A Receptor-type tyrosine-protein phosphatase N2; phogrin, IA-2BETA, protein-tyrosine phosphatase, transmembra protein, diabetes, autoimmunity; 1.95A {Homo sapiens} PDB: 4htj_A
Probab=35.05 E-value=51 Score=24.05 Aligned_cols=53 Identities=17% Similarity=0.146 Sum_probs=37.6
Q ss_pred EeCChhHHHHHHHHHHHHHHHc-CCCCcEEeeccCeEEEEEEeCCCCCCCHHHHHH
Q 029876 113 KVKSFTKGLELFKLVADVAEAE-GHHPDLHLVGWNNVQIEICTHAVGGLTENDFIL 167 (186)
Q Consensus 113 ~F~~F~~a~~Fvn~VA~~AE~~-~HHPdi~~~~y~~V~V~LtTH~~gGLT~~Df~L 167 (186)
+|.++.++..+|+.+|++-.-. +-.-+|+ +....|++.+.+-+ .++|..|+.=
T Consensus 19 ~~l~~~~G~~l~~~la~~l~l~~~~F~~is-V~g~aVTFrV~~N~-~n~taadVA~ 72 (99)
T 4hti_A 19 DPLRPEEGRRLVEDVARLLQVPSSAFADVE-VLGPAVTFKVSANV-QNVTTEDVEK 72 (99)
T ss_dssp SSCCHHHHHHHHHHHHHHTTCCGGGEEEEE-EETTEEEEEECCCT-TCCCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHhCCchhheeeee-ecCceEEEEeccCC-CCCCHHHHHH
Confidence 5678999999998887654321 2233555 46899999996554 4899999743
No 10
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=25.62 E-value=1.6e+02 Score=20.66 Aligned_cols=48 Identities=4% Similarity=0.081 Sum_probs=30.4
Q ss_pred CCCCHHHHHhhCCCCC--CC-eEeccC---CcceEEEEE-EeCChhHHHHHHHHH
Q 029876 80 RPMAEDSAKHLMPKVV--GW-DLVNEN---GILKLNRSL-KVKSFTKGLELFKLV 127 (186)
Q Consensus 80 ~~Lt~~ei~~~L~~l~--gW-~l~~~~---g~~~L~R~F-~F~~F~~a~~Fvn~V 127 (186)
+.||++|..+.|..++ +| ....++ ++..-+|-| .|++..+..+|.+.+
T Consensus 11 P~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~ 65 (91)
T 1uw4_A 11 PTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRF 65 (91)
T ss_dssp TTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHh
Confidence 5699999999998764 23 222221 223445555 898987777766554
No 11
>2fho_A Spliceosomal protein SF3B155; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.40 E-value=32 Score=22.00 Aligned_cols=21 Identities=19% Similarity=0.656 Sum_probs=17.7
Q ss_pred CCCCCHHHHHhhCCCCCCCeEec
Q 029876 79 LRPMAEDSAKHLMPKVVGWDLVN 101 (186)
Q Consensus 79 ~~~Lt~~ei~~~L~~l~gW~l~~ 101 (186)
-.+||+++++.+|. +|.++..
T Consensus 19 nrpltDEeLD~~LP--~GY~il~ 39 (47)
T 2fho_A 19 NRPLSDEELDAMFP--EGYKVLP 39 (47)
T ss_dssp CCCSCTTHHHHHSC--TTEEECC
T ss_pred cCCCCHHHHHHhCC--CCCeecC
Confidence 37899999999999 4888764
Done!