BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029878
(186 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|449455804|ref|XP_004145640.1| PREDICTED: 30S ribosomal protein 3, chloroplastic-like [Cucumis
sativus]
gi|449484535|ref|XP_004156909.1| PREDICTED: 30S ribosomal protein 3, chloroplastic-like [Cucumis
sativus]
Length = 192
Score = 184 bits (466), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 105/191 (54%), Positives = 125/191 (65%), Gaps = 9/191 (4%)
Query: 1 MLSMSFHCHINAVLTPDTSSATAKWPSQNLPLKPF-----TKTSVMLRPQISYLKLRHGT 55
MLSM+ N +TS+ TA+ S+ L PF T S + + L+
Sbjct: 2 MLSMAVQLQPNVNFCFNTSNFTAQTASKPFKL-PFAVRQRTTASSCIPNFHTVFGLQLRR 60
Query: 56 RQVRVKHSSSSAAIDQTLDPEPP---ADDSDCDIILRKEKLGVVVKPNEKRRLVLKFIWM 112
+ R + S+SAA + ++ ADDSD KEKLGVVVKP EK RLVLKFIWM
Sbjct: 61 QNFRTQEISASAAPIEAVEAASELLVADDSDSVSSPVKEKLGVVVKPMEKPRLVLKFIWM 120
Query: 113 QNDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDSKPWISQTERIHLLNQATDV 172
+ +IGIALDQ+IPGHGTIPLSPYYFWPRKDAWEELKVLL+SKPWISQ + I LLNQATD+
Sbjct: 121 EKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATDI 180
Query: 173 INFWQTSGGNL 183
IN WQ GGNL
Sbjct: 181 INLWQQGGGNL 191
>gi|28380123|sp|P82412.1|RRP3_SPIOL RecName: Full=30S ribosomal protein 3, chloroplastic; AltName:
Full=Plastid-specific 30S ribosomal protein 3;
Short=PSRP-3; Flags: Precursor
gi|7578871|gb|AAF64163.1|AF239218_1 plastid-specific ribosomal protein 3 precursor [Spinacia oleracea]
Length = 179
Score = 178 bits (451), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 100/190 (52%), Positives = 121/190 (63%), Gaps = 20/190 (10%)
Query: 1 MLSMSFHCHINAVLTPDTSSATAKWPSQNLPLKPFTKTSVMLRPQ-------ISYLKLRH 53
MLSM+ +INA+ P + S L LKPF KT P+ S LK ++
Sbjct: 1 MLSMAVQPNINAIAKPSI------YQSPKLSLKPF-KTPAFANPKPFFSSPSFSQLKKKN 53
Query: 54 GTRQVRVKHSSSSAAIDQTLDPEPPADDSDCDIILRKEKLGVVVKPNEKRRLVLKFIWMQ 113
+ S AI D D D+++ KEKL V+VKP +K RLVLKFIWM+
Sbjct: 54 NWSLFVAPETISDVAIMGN------EVDIDDDLLVNKEKLKVLVKPMDKPRLVLKFIWME 107
Query: 114 NDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDSKPWISQTERIHLLNQATDVI 173
+IG+ALDQ IPGHGT+PLSPYYFWPRKDAWEELKVLL++KPWISQ + I LLNQATD+I
Sbjct: 108 KNIGLALDQTIPGHGTVPLSPYYFWPRKDAWEELKVLLENKPWISQKQMIILLNQATDII 167
Query: 174 NFWQTSGGNL 183
N WQ SGGNL
Sbjct: 168 NLWQQSGGNL 177
>gi|296087288|emb|CBI33662.3| unnamed protein product [Vitis vinifera]
Length = 175
Score = 176 bits (445), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 96/189 (50%), Positives = 118/189 (62%), Gaps = 21/189 (11%)
Query: 1 MLSMSFHCHINAVLTPDTSSATAKWPSQNLPLKPFTKTSVMLRPQ--ISYLKLRHGTRQV 58
MLSM+ + NA L S P+ +M + +S R + +
Sbjct: 1 MLSMAVQPNPNAALK-----------SYTFPMSSNRNHRLMFKSSNALSLYSTRSASTNL 49
Query: 59 RVKHSSSS----AAIDQTLDPEPPADDSDCDIILRKEKLGVVVKPNEKRRLVLKFIWMQN 114
R++ S + A +Q+ P+ S D+ EKLGVVVKP EK RLVLKFIWM+
Sbjct: 50 RLRASPAPVVAVAVSEQSSAPQESLSASPLDV----EKLGVVVKPMEKPRLVLKFIWMEK 105
Query: 115 DIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDSKPWISQTERIHLLNQATDVIN 174
+IG+ALDQ IPGHGTIPLSPYYFWPRKDAWEE+KVLL+SKPWISQ + I LLNQATD+IN
Sbjct: 106 NIGVALDQAIPGHGTIPLSPYYFWPRKDAWEEIKVLLESKPWISQKQMIILLNQATDIIN 165
Query: 175 FWQTSGGNL 183
WQ SGGNL
Sbjct: 166 LWQQSGGNL 174
>gi|225452011|ref|XP_002283616.1| PREDICTED: 30S ribosomal protein 3, chloroplastic-like isoform 1
[Vitis vinifera]
gi|359488272|ref|XP_003633730.1| PREDICTED: 30S ribosomal protein 3, chloroplastic-like isoform 2
[Vitis vinifera]
Length = 176
Score = 175 bits (444), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 96/189 (50%), Positives = 118/189 (62%), Gaps = 21/189 (11%)
Query: 1 MLSMSFHCHINAVLTPDTSSATAKWPSQNLPLKPFTKTSVMLRPQ--ISYLKLRHGTRQV 58
MLSM+ + NA L S P+ +M + +S R + +
Sbjct: 2 MLSMAVQPNPNAALK-----------SYTFPMSSNRNHRLMFKSSNALSLYSTRSASTNL 50
Query: 59 RVKHSSSS----AAIDQTLDPEPPADDSDCDIILRKEKLGVVVKPNEKRRLVLKFIWMQN 114
R++ S + A +Q+ P+ S D+ EKLGVVVKP EK RLVLKFIWM+
Sbjct: 51 RLRASPAPVVAVAVSEQSSAPQESLSASPLDV----EKLGVVVKPMEKPRLVLKFIWMEK 106
Query: 115 DIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDSKPWISQTERIHLLNQATDVIN 174
+IG+ALDQ IPGHGTIPLSPYYFWPRKDAWEE+KVLL+SKPWISQ + I LLNQATD+IN
Sbjct: 107 NIGVALDQAIPGHGTIPLSPYYFWPRKDAWEEIKVLLESKPWISQKQMIILLNQATDIIN 166
Query: 175 FWQTSGGNL 183
WQ SGGNL
Sbjct: 167 LWQQSGGNL 175
>gi|351723097|ref|NP_001236243.1| uncharacterized protein LOC100306266 [Glycine max]
gi|255628049|gb|ACU14369.1| unknown [Glycine max]
Length = 158
Score = 171 bits (433), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 89/149 (59%), Positives = 105/149 (70%), Gaps = 13/149 (8%)
Query: 35 FTKTSVMLRPQISYLKLRHGTRQVRVKHSSSSAAIDQTLDPEPPADDSDCDIILRKEKLG 94
T S+ L+P +S++ TR S S +A + T PP + EKLG
Sbjct: 22 LTFPSIKLKPSLSHVPSPTPTR-----FSLSVSAAETTAFAAPPTP--------QPEKLG 68
Query: 95 VVVKPNEKRRLVLKFIWMQNDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDSK 154
VVVKP EK RLVLKFIWM+ +IGIALDQ++PGHGTIPLSPYYFWPRKDAWEELK LL++K
Sbjct: 69 VVVKPTEKPRLVLKFIWMEKNIGIALDQMVPGHGTIPLSPYYFWPRKDAWEELKELLENK 128
Query: 155 PWISQTERIHLLNQATDVINFWQTSGGNL 183
PWISQ + I LLNQATD+IN WQ SGGNL
Sbjct: 129 PWISQKQMIILLNQATDIINLWQQSGGNL 157
>gi|255576477|ref|XP_002529130.1| Plastid-specific 30S ribosomal protein 3, chloroplast precursor,
putative [Ricinus communis]
gi|223531409|gb|EEF33243.1| Plastid-specific 30S ribosomal protein 3, chloroplast precursor,
putative [Ricinus communis]
Length = 180
Score = 169 bits (428), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 93/158 (58%), Positives = 110/158 (69%), Gaps = 17/158 (10%)
Query: 37 KTSVMLRPQISYL--------KLRHGTRQVRVKHSSSSAAI---DQTLDPEPPADDSDCD 85
KTS+ P+IS L K+R +R R+ +S A+ D+T + E P D D
Sbjct: 27 KTSIFANPKISLLYSSTILDPKMRPISRNERLTTFASPEALTVEDKTSETEEPISD---D 83
Query: 86 IILRKEKLGVVVKPNEKRRLVLKFIWMQNDIGIALDQVIPGHGTIPLSPYYFWPRKDAWE 145
II EK+ V VK EK RLVLKFIWM+ +IG+ALDQVIPGHGTIPLSPY+FWPRKDAWE
Sbjct: 84 II---EKVEVAVKQVEKPRLVLKFIWMEKNIGLALDQVIPGHGTIPLSPYFFWPRKDAWE 140
Query: 146 ELKVLLDSKPWISQTERIHLLNQATDVINFWQTSGGNL 183
ELK L+SKPWISQ + I LLNQATD+IN WQ SGGNL
Sbjct: 141 ELKTTLESKPWISQKKMIILLNQATDIINLWQQSGGNL 178
>gi|388517745|gb|AFK46934.1| unknown [Lotus japonicus]
Length = 175
Score = 167 bits (422), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 77/105 (73%), Positives = 87/105 (82%)
Query: 79 ADDSDCDIILRKEKLGVVVKPNEKRRLVLKFIWMQNDIGIALDQVIPGHGTIPLSPYYFW 138
A+ D + +KLGVVVKP +K RLVLKFIWM+ +IGIALDQ +PGHGTIPLSPYYFW
Sbjct: 70 AEQDDTSLSPPPQKLGVVVKPTDKPRLVLKFIWMEKNIGIALDQAVPGHGTIPLSPYYFW 129
Query: 139 PRKDAWEELKVLLDSKPWISQTERIHLLNQATDVINFWQTSGGNL 183
PRKDAWEELK LL+SKPWISQ + I LLNQATD+IN WQ SGGNL
Sbjct: 130 PRKDAWEELKELLESKPWISQKQMIILLNQATDIINLWQQSGGNL 174
>gi|388507154|gb|AFK41643.1| unknown [Lotus japonicus]
Length = 175
Score = 166 bits (421), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 77/105 (73%), Positives = 87/105 (82%)
Query: 79 ADDSDCDIILRKEKLGVVVKPNEKRRLVLKFIWMQNDIGIALDQVIPGHGTIPLSPYYFW 138
A+ D + +KLGVVVKP +K RLVLKFIWM+ +IGIALDQ +PGHGTIPLSPYYFW
Sbjct: 70 AEQDDTSLSPPPQKLGVVVKPTDKPRLVLKFIWMEKNIGIALDQAVPGHGTIPLSPYYFW 129
Query: 139 PRKDAWEELKVLLDSKPWISQTERIHLLNQATDVINFWQTSGGNL 183
PRKDAWEELK LL+SKPWISQ + I LLNQATD+IN WQ SGGNL
Sbjct: 130 PRKDAWEELKELLESKPWISQKQMIILLNQATDIINLWQQSGGNL 174
>gi|224099355|ref|XP_002311451.1| predicted protein [Populus trichocarpa]
gi|222851271|gb|EEE88818.1| predicted protein [Populus trichocarpa]
Length = 189
Score = 166 bits (419), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 92/193 (47%), Positives = 117/193 (60%), Gaps = 17/193 (8%)
Query: 1 MLSMSFHCHINAVLTPDTSSATAKWPSQNLPLKPFTKTSVMLRPQISYLK----LRHGTR 56
MLSM+F +N V T P + K F K ++ + P+ + ++ R
Sbjct: 1 MLSMAFQSGVNNVFT------YYSLPCRTPSCKTF-KATISVNPKPNPIRSSTFFDRERR 53
Query: 57 QVRVKHSSSSAAIDQTLDPEPPADDSDCDI------ILRKEKLGVVVKPNEKRRLVLKFI 110
V ++ A+ + L E PAD + I EK +VVK EK RLVLKF+
Sbjct: 54 HVSRNQRYTTFAVPEALAAETPADAPPSNAAGESIPIQETEKAELVVKQVEKPRLVLKFV 113
Query: 111 WMQNDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDSKPWISQTERIHLLNQAT 170
WM+ +IG+ALDQVIPGHGT+PLSPY+FWPRKDAWEELK L+SKPWISQ + I LLNQAT
Sbjct: 114 WMEKNIGLALDQVIPGHGTVPLSPYFFWPRKDAWEELKATLESKPWISQKKMIILLNQAT 173
Query: 171 DVINFWQTSGGNL 183
D+IN WQ SGGNL
Sbjct: 174 DIINLWQQSGGNL 186
>gi|224111708|ref|XP_002315948.1| predicted protein [Populus trichocarpa]
gi|222864988|gb|EEF02119.1| predicted protein [Populus trichocarpa]
Length = 189
Score = 164 bits (415), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 93/192 (48%), Positives = 116/192 (60%), Gaps = 15/192 (7%)
Query: 1 MLSMSFHCHINAVLTPDTSSATAKWPSQNLPLKPFTKT-SVMLRPQI---SYLKLRHGTR 56
MLS++F C + V T + P Q K F T S +P + S R R
Sbjct: 1 MLSVAFQCGFSNVFT------NSSLPCQTPSCKTFKATFSTNPKPNLIHSSTFLDRKRKR 54
Query: 57 QVRVKHSSSSAA-----IDQTLDPEPPADDSDCDIILRKEKLGVVVKPNEKRRLVLKFIW 111
R + ++ AA ++ +D P + + EK V+VK EK RLVLKFIW
Sbjct: 55 VSRNQRYTTFAAPEALTVETPIDTPPSTETEESIPAQGTEKAEVLVKQVEKPRLVLKFIW 114
Query: 112 MQNDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDSKPWISQTERIHLLNQATD 171
M+ +IG+ALDQVIPGHGT+PLSPY+FWPRKDAWEELK L+SKPWISQ + I LLNQATD
Sbjct: 115 MEKNIGLALDQVIPGHGTVPLSPYFFWPRKDAWEELKATLESKPWISQKKMIILLNQATD 174
Query: 172 VINFWQTSGGNL 183
+IN WQ SGGNL
Sbjct: 175 IINLWQQSGGNL 186
>gi|297807599|ref|XP_002871683.1| hypothetical protein ARALYDRAFT_488420 [Arabidopsis lyrata subsp.
lyrata]
gi|297317520|gb|EFH47942.1| hypothetical protein ARALYDRAFT_488420 [Arabidopsis lyrata subsp.
lyrata]
Length = 183
Score = 163 bits (413), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 80/133 (60%), Positives = 99/133 (74%), Gaps = 9/133 (6%)
Query: 57 QVRVKHSS------SSAAIDQTLDPEPPADDSDCDIILRKEKLGVVVKPNEKRRLVLKFI 110
Q+ +HS +SA + T EPP +S L K+K+ V+VKP EK ++VLKF+
Sbjct: 53 QIPTRHSGKNPGIFASAPSNLTFSHEPPESESPP---LGKKKMRVLVKPLEKPKVVLKFV 109
Query: 111 WMQNDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDSKPWISQTERIHLLNQAT 170
WMQ DIG+ALD +IPG GTIPLSPYYFWPRKDAWEELK LL+SKPWIS+ R+ LLNQAT
Sbjct: 110 WMQKDIGVALDHMIPGFGTIPLSPYYFWPRKDAWEELKALLESKPWISELHRVFLLNQAT 169
Query: 171 DVINFWQTSGGNL 183
D+IN WQ+SGG+L
Sbjct: 170 DIINLWQSSGGDL 182
>gi|357501007|ref|XP_003620792.1| 30S ribosomal protein [Medicago truncatula]
gi|217075300|gb|ACJ86010.1| unknown [Medicago truncatula]
gi|355495807|gb|AES77010.1| 30S ribosomal protein [Medicago truncatula]
gi|388491518|gb|AFK33825.1| unknown [Medicago truncatula]
Length = 161
Score = 162 bits (410), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 75/95 (78%), Positives = 84/95 (88%)
Query: 89 RKEKLGVVVKPNEKRRLVLKFIWMQNDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELK 148
+ +KLGVVVKP +K RLVLKFIWM+ +IGI LDQ+IPGHGTIPLSPYYFWPRKDAWEELK
Sbjct: 65 QSQKLGVVVKPTDKPRLVLKFIWMEKNIGIGLDQMIPGHGTIPLSPYYFWPRKDAWEELK 124
Query: 149 VLLDSKPWISQTERIHLLNQATDVINFWQTSGGNL 183
LL+SKPWISQ + I LLNQATD+IN WQ SGGNL
Sbjct: 125 ELLESKPWISQKQMIILLNQATDIINLWQQSGGNL 159
>gi|15242377|ref|NP_197080.1| 30S ribosomal protein 3-2 [Arabidopsis thaliana]
gi|28380137|sp|Q9LFV0.1|RRP32_ARATH RecName: Full=30S ribosomal protein 3-2, chloroplastic; AltName:
Full=Plastid-specific 30S ribosomal protein 3-2;
Short=PSRP-3 2; Flags: Precursor
gi|9755621|emb|CAC01775.1| ribosomal protein 3 precursor-like protein [Arabidopsis thaliana]
gi|26450781|dbj|BAC42499.1| putative ribosomal protein 3 precursor [Arabidopsis thaliana]
gi|28372914|gb|AAO39939.1| At5g15760 [Arabidopsis thaliana]
gi|332004819|gb|AED92202.1| 30S ribosomal protein 3-2 [Arabidopsis thaliana]
Length = 183
Score = 162 bits (409), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 90/170 (52%), Positives = 110/170 (64%), Gaps = 17/170 (10%)
Query: 26 PSQNLPLKPF------TKTSVMLRPQISYLKLRHGTRQVRVKHSSSSAAI------DQTL 73
PSQ L KP TK RP +S G Q+ +HS + I + T
Sbjct: 18 PSQKLSSKPIAHISLSTKLKPSSRPSLSCSTWNQG--QIPARHSCINPGIFAYPPSNLTF 75
Query: 74 DPEPPADDSDCDIILRKEKLGVVVKPNEKRRLVLKFIWMQNDIGIALDQVIPGHGTIPLS 133
E P +S L K+K+ V+VKP EK ++VLKF+WMQ DIG+ALD +IPG GTIPLS
Sbjct: 76 SHELPESESPP---LGKKKMRVLVKPLEKPKVVLKFVWMQKDIGVALDHMIPGFGTIPLS 132
Query: 134 PYYFWPRKDAWEELKVLLDSKPWISQTERIHLLNQATDVINFWQTSGGNL 183
PYYFWPRKDAWEELK LL+SKPWIS+ R+ LLNQATD+IN WQ+SGG+L
Sbjct: 133 PYYFWPRKDAWEELKTLLESKPWISELHRVFLLNQATDIINLWQSSGGDL 182
>gi|224077158|ref|XP_002305158.1| predicted protein [Populus trichocarpa]
gi|222848122|gb|EEE85669.1| predicted protein [Populus trichocarpa]
Length = 175
Score = 158 bits (399), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 88/183 (48%), Positives = 114/183 (62%), Gaps = 11/183 (6%)
Query: 1 MLSMSFHCHINAVLTPDTSSATAKWPSQNLPLKPFTKTSVMLRPQISYLKLRH-GTRQVR 59
+ SM+ I L P T +PSQ+L KP ++P+ L+ T +
Sbjct: 2 LASMATQPKIQTHLQPST------FPSQSLLRKPLKTPIFSIKPKPFCFHLKSLYTLKTP 55
Query: 60 VKHSSSSAAIDQTLDPEPPADDSDCDIILRKEKLGVVVKPNEKRRLVLKFIWMQNDIGIA 119
+ S+ QTL P ++ + + KEKLGVVVKP EK R+VLKFIWMQ IGIA
Sbjct: 56 ARLKLSAPKAQQTL----PEEEKENETSTEKEKLGVVVKPIEKSRVVLKFIWMQKVIGIA 111
Query: 120 LDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDSKPWISQTERIHLLNQATDVINFWQTS 179
L+QVIPGHGTIPLSPYYFWP++DAWE+L++LL KPWIS+ + LLNQATD+I WQ +
Sbjct: 112 LNQVIPGHGTIPLSPYYFWPKEDAWEQLRLLLVGKPWISRKQLHDLLNQATDIIELWQDT 171
Query: 180 GGN 182
G N
Sbjct: 172 GSN 174
>gi|90657548|gb|ABD96848.1| hypothetical protein [Cleome spinosa]
Length = 182
Score = 157 bits (396), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 76/120 (63%), Positives = 90/120 (75%), Gaps = 3/120 (2%)
Query: 64 SSSAAIDQTLDPEPPADDSDCDIILRKEKLGVVVKPNEKRRLVLKFIWMQNDIGIALDQV 123
+SS+ D + E DS +K+KL VVKP EK RLVLKF+WMQ DIGI LDQ+
Sbjct: 65 ASSSPADPIVSDELSGSDSPSP---KKKKLRAVVKPLEKPRLVLKFLWMQKDIGIGLDQM 121
Query: 124 IPGHGTIPLSPYYFWPRKDAWEELKVLLDSKPWISQTERIHLLNQATDVINFWQTSGGNL 183
+ G+GTIPLSPYYFWPRKDAWEELKVLL+SKPWIS R+ LLNQAT++IN WQ+ GG L
Sbjct: 122 VDGYGTIPLSPYYFWPRKDAWEELKVLLESKPWISNAHRVFLLNQATEIINLWQSGGGGL 181
>gi|255580309|ref|XP_002530983.1| Plastid-specific 30S ribosomal protein 3, chloroplast precursor,
putative [Ricinus communis]
gi|223529435|gb|EEF31395.1| Plastid-specific 30S ribosomal protein 3, chloroplast precursor,
putative [Ricinus communis]
Length = 174
Score = 156 bits (395), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 86/163 (52%), Positives = 105/163 (64%), Gaps = 15/163 (9%)
Query: 27 SQNLPLKPFTKTS--VMLRPQISYLKLRHGTRQVRV-----KHSSSSAAIDQTLDPEPPA 79
SQ L LKP ++ + +P+ SYL + ++ K S++A D L E
Sbjct: 18 SQTLFLKPLKISTPFISFQPKSSYLSIHSPATTLKTIQDLPKLKLSASAADSILSQEVSP 77
Query: 80 DDSDCDIILRKEKLGVVVKPNEKRRLVLKFIWMQNDIGIALDQVIPGHGTIPLSPYYFWP 139
KEKLGVVVKP EK R+VLK IWM+ IG+ LDQVIPG GTIPLSPYYFWP
Sbjct: 78 T--------HKEKLGVVVKPMEKPRIVLKLIWMEKAIGVGLDQVIPGFGTIPLSPYYFWP 129
Query: 140 RKDAWEELKVLLDSKPWISQTERIHLLNQATDVINFWQTSGGN 182
++DAWE+LKVLL+SKPWISQ + LLNQATD+IN WQ SG N
Sbjct: 130 KEDAWEQLKVLLESKPWISQKQMHILLNQATDIINLWQDSGCN 172
>gi|297841583|ref|XP_002888673.1| plastid-specific ribosomal protein 3 precursor [Arabidopsis lyrata
subsp. lyrata]
gi|297334514|gb|EFH64932.1| plastid-specific ribosomal protein 3 precursor [Arabidopsis lyrata
subsp. lyrata]
Length = 162
Score = 151 bits (382), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 77/137 (56%), Positives = 95/137 (69%), Gaps = 6/137 (4%)
Query: 49 LKLRHGTRQVRVKHSSSSAAIDQTLDPEPPA--DDSDCDIILRKEKLGVVVKPNEKRRLV 106
L L T+ + VK + A +TL E D SD ++ VVKP+EK R+V
Sbjct: 27 LFLNQTTKPISVKRKIITLAAPETLTAETVTGIDTSDNT----PQQTTKVVKPDEKSRVV 82
Query: 107 LKFIWMQNDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDSKPWISQTERIHLL 166
LKF+WM+ +IG+ LDQ +PGHGTIPLSPY+FWPRKDAWEELK L++KPWISQ + I LL
Sbjct: 83 LKFVWMEKNIGLGLDQHVPGHGTIPLSPYFFWPRKDAWEELKSTLEAKPWISQKKMIILL 142
Query: 167 NQATDVINFWQTSGGNL 183
NQATD+IN WQ SGGNL
Sbjct: 143 NQATDIINLWQQSGGNL 159
>gi|116792964|gb|ABK26571.1| unknown [Picea sitchensis]
gi|116793098|gb|ABK26613.1| unknown [Picea sitchensis]
Length = 211
Score = 151 bits (381), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 72/119 (60%), Positives = 88/119 (73%), Gaps = 6/119 (5%)
Query: 66 SAAIDQTLDPEP-PADDSDCDIILRKEKLGVVVKPNEKRRLVLKFIWMQNDIGIALDQVI 124
+A ++ +PEP PA + + K K VVVK K+R+VLKFIW++ +IG+ALDQV+
Sbjct: 98 AAQVEARSEPEPEPALEKE-----EKNKAKVVVKAPRKQRIVLKFIWLEKNIGLALDQVV 152
Query: 125 PGHGTIPLSPYYFWPRKDAWEELKVLLDSKPWISQTERIHLLNQATDVINFWQTSGGNL 183
PGHGTIPLSPYYFWPRKDAWEELK L+SK WISQ I LLNQATD+IN WQ G N+
Sbjct: 153 PGHGTIPLSPYYFWPRKDAWEELKAKLESKSWISQKRTIILLNQATDIINLWQQGGSNI 211
>gi|21554275|gb|AAM63350.1| plastid-specific ribosomal protein 3 precursor [Arabidopsis
thaliana]
Length = 166
Score = 150 bits (379), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 75/131 (57%), Positives = 93/131 (70%), Gaps = 6/131 (4%)
Query: 55 TRQVRVKHSSSSAAIDQTLDPEPPA--DDSDCDIILRKEKLGVVVKPNEKRRLVLKFIWM 112
T+ + VK + A +TL E D SD ++ VVKP+EK R+VLKF+WM
Sbjct: 37 TKPISVKRKIITLAAPETLTAETVTGIDTSDNT----PQQTTKVVKPDEKSRVVLKFVWM 92
Query: 113 QNDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDSKPWISQTERIHLLNQATDV 172
+ +IG+ LDQ +PGHGTIPLSPY+FWPRKDAWEELK L++KPWISQ + I LLNQATD+
Sbjct: 93 EKNIGLGLDQHVPGHGTIPLSPYFFWPRKDAWEELKSTLEAKPWISQKKMIILLNQATDI 152
Query: 173 INFWQTSGGNL 183
IN WQ SGGNL
Sbjct: 153 INLWQQSGGNL 163
>gi|18409071|ref|NP_564934.1| 30S ribosomal protein 3-1 [Arabidopsis thaliana]
gi|28380141|sp|Q9SX22.1|RRP31_ARATH RecName: Full=30S ribosomal protein 3-1, chloroplastic; AltName:
Full=Plastid-specific 30S ribosomal protein 3-1;
Short=PSRP-3 1; Flags: Precursor
gi|5734719|gb|AAD49984.1|AC008075_17 ESTs gb|H37416, gb|T21163, gb|T76138 and gb|AA651329 come from this
gene [Arabidopsis thaliana]
gi|28393198|gb|AAO42029.1| unknown protein [Arabidopsis thaliana]
gi|28827558|gb|AAO50623.1| unknown protein [Arabidopsis thaliana]
gi|332196695|gb|AEE34816.1| 30S ribosomal protein 3-1 [Arabidopsis thaliana]
Length = 166
Score = 150 bits (378), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 65/88 (73%), Positives = 77/88 (87%)
Query: 96 VVKPNEKRRLVLKFIWMQNDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDSKP 155
VVKP+EK R+VLKF+WM+ +IG+ LDQ +PGHGTIPLSPY+FWPRKDAWEELK L++KP
Sbjct: 76 VVKPDEKSRVVLKFVWMEKNIGLGLDQHVPGHGTIPLSPYFFWPRKDAWEELKSTLEAKP 135
Query: 156 WISQTERIHLLNQATDVINFWQTSGGNL 183
WISQ + I LLNQATD+IN WQ SGGNL
Sbjct: 136 WISQKKMIILLNQATDIINLWQQSGGNL 163
>gi|145326692|ref|NP_001077793.1| 30S ribosomal protein 3-1 [Arabidopsis thaliana]
gi|332196696|gb|AEE34817.1| 30S ribosomal protein 3-1 [Arabidopsis thaliana]
Length = 163
Score = 148 bits (373), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 63/88 (71%), Positives = 76/88 (86%)
Query: 96 VVKPNEKRRLVLKFIWMQNDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDSKP 155
+KP+EK R+VLKF+WM+ +IG+ LDQ +PGHGTIPLSPY+FWPRKDAWEELK L++KP
Sbjct: 73 TIKPDEKSRVVLKFVWMEKNIGLGLDQHVPGHGTIPLSPYFFWPRKDAWEELKSTLEAKP 132
Query: 156 WISQTERIHLLNQATDVINFWQTSGGNL 183
WISQ + I LLNQATD+IN WQ SGGNL
Sbjct: 133 WISQKKMIILLNQATDIINLWQQSGGNL 160
>gi|357163969|ref|XP_003579907.1| PREDICTED: 30S ribosomal protein 3, chloroplastic-like
[Brachypodium distachyon]
Length = 180
Score = 148 bits (373), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 79/187 (42%), Positives = 110/187 (58%), Gaps = 13/187 (6%)
Query: 1 MLSMSFHCHINAVLTPDTSSATAKWPSQNLPLKPFTKTSVMLRPQISYLKLRHGTRQVRV 60
ML MS H P T++ P + P P + ++ L P + + K R +
Sbjct: 1 MLPMSVH--------PATTATLVSRPRLSAPKSPASPSTSSL-PHLVHFKSRRLPLRSLR 51
Query: 61 KHSSSSAAIDQTL----DPEPPADDSDCDIILRKEKLGVVVKPNEKRRLVLKFIWMQNDI 116
++++ +Q+ + EP +D D ++ E+ V V + LVLKFIWM+ +I
Sbjct: 52 GLAAAAVEAEQSFVGLGEEEPEVGAADADAVVEGEEYKVAVPERQDPMLVLKFIWMEKNI 111
Query: 117 GIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDSKPWISQTERIHLLNQATDVINFW 176
GIALDQ++PG G+IPLSPYYFWPRKDAWEEL+ L+ K WISQ + I LLNQATD+IN W
Sbjct: 112 GIALDQMVPGFGSIPLSPYYFWPRKDAWEELRAKLEEKEWISQKQMIILLNQATDIINLW 171
Query: 177 QTSGGNL 183
Q GG+L
Sbjct: 172 QQGGGSL 178
>gi|147784271|emb|CAN68341.1| hypothetical protein VITISV_004015 [Vitis vinifera]
Length = 179
Score = 147 bits (370), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 87/188 (46%), Positives = 113/188 (60%), Gaps = 20/188 (10%)
Query: 4 MSFHCHINAVLTPDTSSATAKWPSQNLPLKPFTKTS--VMLRPQISYLKLRHGTRQVRVK 61
M+ IN+ + +PSQN K +KT + L P+ + + T +R K
Sbjct: 1 MAAQSSINSTFI------CSSFPSQNPSFK-ISKTPFPIPLNPKPLFQRSSTXTPGIRTK 53
Query: 62 HSS-------SSAAIDQTLDPEPPADDSDCDIILRKEKLGVVVKPNEKRRLVLKFIWMQN 114
S S+A+ +T +P S + EK+ V+VK E RLVLKF+WM+
Sbjct: 54 PSMKLQRLAVSAASEARTAEPSTANPISSEE----NEKVEVIVKVMETPRLVLKFVWMEK 109
Query: 115 DIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDSKPWISQTERIHLLNQATDVIN 174
+IG+ALDQVIPG+GT PLSPYYFWP KDAWEELK L+SKPWISQ + I LLN+ATD+IN
Sbjct: 110 NIGVALDQVIPGYGTNPLSPYYFWPGKDAWEELKSTLESKPWISQKKMIILLNEATDIIN 169
Query: 175 FWQTSGGN 182
WQ SGGN
Sbjct: 170 LWQQSGGN 177
>gi|383129941|gb|AFG45706.1| hypothetical protein 0_5104_02, partial [Pinus taeda]
Length = 121
Score = 143 bits (360), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 66/94 (70%), Positives = 75/94 (79%)
Query: 90 KEKLGVVVKPNEKRRLVLKFIWMQNDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKV 149
K K VVVK +RLVLKFIW++ +IG+ALDQV+PGHGTIPLSPYYFWPRKDAWEELK
Sbjct: 28 KNKAKVVVKAPRNQRLVLKFIWLEKNIGLALDQVVPGHGTIPLSPYYFWPRKDAWEELKA 87
Query: 150 LLDSKPWISQTERIHLLNQATDVINFWQTSGGNL 183
L+SK WISQ I LLNQATD+IN WQ G N+
Sbjct: 88 KLESKSWISQKRIIILLNQATDIINLWQQGGSNI 121
>gi|225423933|ref|XP_002279011.1| PREDICTED: 30S ribosomal protein 3-1, chloroplastic-like [Vitis
vinifera]
Length = 146
Score = 141 bits (356), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 70/111 (63%), Positives = 85/111 (76%), Gaps = 1/111 (0%)
Query: 73 LDPEPPADDSDCDII-LRKEKLGVVVKPNEKRRLVLKFIWMQNDIGIALDQVIPGHGTIP 131
L+P+P S D +R + + V+VK E RLVLKF+WM+ +IG+ALDQVIPG+GT P
Sbjct: 34 LNPKPLFLWSSTDTPGIRTKLIEVIVKVMETPRLVLKFVWMEKNIGVALDQVIPGYGTNP 93
Query: 132 LSPYYFWPRKDAWEELKVLLDSKPWISQTERIHLLNQATDVINFWQTSGGN 182
LSPYYFWP KDAWEELK L+SKPWISQ + I LLN+ATD+IN WQ SGGN
Sbjct: 94 LSPYYFWPGKDAWEELKSTLESKPWISQKKMIILLNEATDIINLWQQSGGN 144
>gi|6136559|sp|O48609.1|RRP3_HORVU RecName: Full=30S ribosomal protein 3, chloroplastic; AltName:
Full=Plastid-specific 30S ribosomal protein 3;
Short=PSRP-3; Flags: Precursor
gi|2695931|emb|CAA10984.1| hypothetical protein [Hordeum vulgare subsp. vulgare]
gi|326492988|dbj|BAJ84955.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 181
Score = 140 bits (352), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 64/110 (58%), Positives = 80/110 (72%)
Query: 74 DPEPPADDSDCDIILRKEKLGVVVKPNEKRRLVLKFIWMQNDIGIALDQVIPGHGTIPLS 133
D EP + D + ++ E+ V V + LVLKFIWM+ +IGIALDQ++PG G+IPLS
Sbjct: 70 DDEPLGGEGDAEAVVESEEYKVEVPEKQDPMLVLKFIWMEKNIGIALDQMVPGVGSIPLS 129
Query: 134 PYYFWPRKDAWEELKVLLDSKPWISQTERIHLLNQATDVINFWQTSGGNL 183
PYYFWPRKDAWEEL+ L+ K WISQ + I LLNQATD+IN WQ GG+L
Sbjct: 130 PYYFWPRKDAWEELRAKLEEKEWISQKQMIILLNQATDIINLWQQGGGSL 179
>gi|168052440|ref|XP_001778658.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669976|gb|EDQ56553.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 207
Score = 135 bits (341), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 62/118 (52%), Positives = 86/118 (72%), Gaps = 5/118 (4%)
Query: 71 QTLDPEPPADDSDCDIILRK-----EKLGVVVKPNEKRRLVLKFIWMQNDIGIALDQVIP 125
Q L + A+ ++ +++L K +K V V +K+R++L+F+W++ +IGI LDQV+P
Sbjct: 90 QRLSVKASAEAAESEMVLNKPQGSGKKKKVAVAAPKKQRVLLRFLWLEKNIGIGLDQVVP 149
Query: 126 GHGTIPLSPYYFWPRKDAWEELKVLLDSKPWISQTERIHLLNQATDVINFWQTSGGNL 183
GHGT+PLSPY+FWPRKDAWEELK LDSK WIS+ I LLNQATD+IN WQ + +L
Sbjct: 150 GHGTVPLSPYFFWPRKDAWEELKAKLDSKGWISRKRTIILLNQATDIINLWQQNATDL 207
>gi|212722148|ref|NP_001132530.1| uncharacterized protein LOC100193993 [Zea mays]
gi|194694650|gb|ACF81409.1| unknown [Zea mays]
gi|195604602|gb|ACG24131.1| plastid-specific 30S ribosomal protein 3 [Zea mays]
gi|195605154|gb|ACG24407.1| plastid-specific 30S ribosomal protein 3 [Zea mays]
gi|413918560|gb|AFW58492.1| plastid-specific 30S ribosomal protein 3 [Zea mays]
Length = 177
Score = 135 bits (340), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 61/89 (68%), Positives = 72/89 (80%)
Query: 95 VVVKPNEKRRLVLKFIWMQNDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDSK 154
VVV + LVLKFIWM+ +IGIALDQ++PG+G+IPLSPYYFWPRKDAWEEL+ L+ K
Sbjct: 87 VVVPERQDPMLVLKFIWMEKNIGIALDQLVPGYGSIPLSPYYFWPRKDAWEELRAKLEEK 146
Query: 155 PWISQTERIHLLNQATDVINFWQTSGGNL 183
WISQ + I LLNQATD+IN WQ GGNL
Sbjct: 147 EWISQKQMIILLNQATDIINLWQQGGGNL 175
>gi|168003682|ref|XP_001754541.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162694162|gb|EDQ80511.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 108
Score = 135 bits (340), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 59/89 (66%), Positives = 74/89 (83%)
Query: 95 VVVKPNEKRRLVLKFIWMQNDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDSK 154
+V+ P +K+R++L+F+W++ +IGIALDQV+PGHGTIPLSPYYFWPRKDAWEELK LDSK
Sbjct: 20 LVISPPKKQRVLLRFLWLEKNIGIALDQVVPGHGTIPLSPYYFWPRKDAWEELKAKLDSK 79
Query: 155 PWISQTERIHLLNQATDVINFWQTSGGNL 183
WIS+ I LLNQATD+IN WQ + L
Sbjct: 80 GWISRKRTIILLNQATDIINLWQQNAAEL 108
>gi|242073370|ref|XP_002446621.1| hypothetical protein SORBIDRAFT_06g019030 [Sorghum bicolor]
gi|241937804|gb|EES10949.1| hypothetical protein SORBIDRAFT_06g019030 [Sorghum bicolor]
Length = 180
Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 60/89 (67%), Positives = 72/89 (80%)
Query: 95 VVVKPNEKRRLVLKFIWMQNDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDSK 154
VVV + LVLKFIWM+ +IGIALDQ++PG+G+IPLSPYYFWPRKDAWEEL+ L+ K
Sbjct: 90 VVVPERQDPMLVLKFIWMEKNIGIALDQLVPGYGSIPLSPYYFWPRKDAWEELRAKLEEK 149
Query: 155 PWISQTERIHLLNQATDVINFWQTSGGNL 183
WISQ + I LLNQATD+IN WQ GG+L
Sbjct: 150 EWISQKQMIILLNQATDIINLWQQGGGSL 178
>gi|226528607|ref|NP_001148519.1| plastid-specific 30S ribosomal protein 3 [Zea mays]
gi|195619976|gb|ACG31818.1| plastid-specific 30S ribosomal protein 3 [Zea mays]
Length = 178
Score = 133 bits (335), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 60/89 (67%), Positives = 72/89 (80%)
Query: 95 VVVKPNEKRRLVLKFIWMQNDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDSK 154
VVV + LVLKFIWM+ +IGIALDQ++PG+G+IPLSPYYFWPRKDAWEEL+ L+ K
Sbjct: 88 VVVPERQDPMLVLKFIWMEKNIGIALDQLVPGYGSIPLSPYYFWPRKDAWEELRAKLEEK 147
Query: 155 PWISQTERIHLLNQATDVINFWQTSGGNL 183
WISQ + I LLNQATD+IN WQ GG+L
Sbjct: 148 EWISQKQMIILLNQATDIINLWQQGGGSL 176
>gi|115458788|ref|NP_001052994.1| Os04g0461100 [Oryza sativa Japonica Group]
gi|38344967|emb|CAD40987.2| OSJNBa0072F16.12 [Oryza sativa Japonica Group]
gi|113564565|dbj|BAF14908.1| Os04g0461100 [Oryza sativa Japonica Group]
gi|116310450|emb|CAH67455.1| H0219H12.12 [Oryza sativa Indica Group]
gi|125548585|gb|EAY94407.1| hypothetical protein OsI_16175 [Oryza sativa Indica Group]
gi|125590631|gb|EAZ30981.1| hypothetical protein OsJ_15062 [Oryza sativa Japonica Group]
gi|215695522|dbj|BAG90713.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 183
Score = 132 bits (332), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 57/79 (72%), Positives = 68/79 (86%)
Query: 105 LVLKFIWMQNDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDSKPWISQTERIH 164
LVLKFIWM+ +IGIALDQ++PG+G+IPLSPYYFWPRKDAWEEL+ L+ K WISQ + I
Sbjct: 103 LVLKFIWMEKNIGIALDQLVPGYGSIPLSPYYFWPRKDAWEELRAKLEEKEWISQKQMII 162
Query: 165 LLNQATDVINFWQTSGGNL 183
LLNQATD+IN WQ GG+L
Sbjct: 163 LLNQATDIINLWQQGGGSL 181
>gi|149390967|gb|ABR25501.1| plastid-specific 30S ribosomal protein [Oryza sativa Indica Group]
Length = 176
Score = 132 bits (332), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 57/79 (72%), Positives = 68/79 (86%)
Query: 105 LVLKFIWMQNDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDSKPWISQTERIH 164
LVLKFIWM+ +IGIALDQ++PG+G+IPLSPYYFWPRKDAWEEL+ L+ K WISQ + I
Sbjct: 96 LVLKFIWMEKNIGIALDQLVPGYGSIPLSPYYFWPRKDAWEELRAKLEEKEWISQKQMII 155
Query: 165 LLNQATDVINFWQTSGGNL 183
LLNQATD+IN WQ GG+L
Sbjct: 156 LLNQATDIINLWQQGGGSL 174
>gi|116784544|gb|ABK23386.1| unknown [Picea sitchensis]
gi|116786074|gb|ABK23962.1| unknown [Picea sitchensis]
Length = 205
Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 57/82 (69%), Positives = 68/82 (82%)
Query: 102 KRRLVLKFIWMQNDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDSKPWISQTE 161
K+R+VLKFIW++ +IG+ALDQV+PGHGTI LSPYYFWPRKDAWEELK L+S W+SQ
Sbjct: 124 KQRVVLKFIWLEKNIGLALDQVVPGHGTISLSPYYFWPRKDAWEELKAKLESISWVSQKR 183
Query: 162 RIHLLNQATDVINFWQTSGGNL 183
I LLNQATD+IN WQ G N+
Sbjct: 184 TIILLNQATDIINLWQQVGSNI 205
>gi|302758326|ref|XP_002962586.1| hypothetical protein SELMODRAFT_165619 [Selaginella moellendorffii]
gi|300169447|gb|EFJ36049.1| hypothetical protein SELMODRAFT_165619 [Selaginella moellendorffii]
Length = 184
Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 63/113 (55%), Positives = 81/113 (71%), Gaps = 3/113 (2%)
Query: 71 QTLDPEPPADDSDCDIILRKEKLGVVVKPNEKRRLVLKFIWMQNDIGIALDQVIPGHGTI 130
Q PEP + D + +K+KL + + K+ L L+F+WM+ +IGIALDQV+PGHGTI
Sbjct: 75 QEETPEPTSS-VYSDNLSKKDKLAI--RSAGKQILSLRFLWMEKNIGIALDQVVPGHGTI 131
Query: 131 PLSPYYFWPRKDAWEELKVLLDSKPWISQTERIHLLNQATDVINFWQTSGGNL 183
PLSP+YFWP+KDAWEELK L+SKPWIS+ I LLNQATD+IN WQ +
Sbjct: 132 PLSPFYFWPKKDAWEELKAKLESKPWISRRRTIILLNQATDIINLWQQKASSF 184
>gi|414586872|tpg|DAA37443.1| TPA: plastid-specific 30S ribosomal protein 3, mRNA isoform 1 [Zea
mays]
gi|414586873|tpg|DAA37444.1| TPA: hypothetical protein ZEAMMB73_159189 [Zea mays]
Length = 82
Score = 130 bits (326), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 57/79 (72%), Positives = 68/79 (86%)
Query: 105 LVLKFIWMQNDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDSKPWISQTERIH 164
LVLKFIWM+ +IGIALDQ++PG+G+IPLSPYYFWPRKDAWEEL+ L+ K WISQ + I
Sbjct: 2 LVLKFIWMEKNIGIALDQLVPGYGSIPLSPYYFWPRKDAWEELRAKLEEKEWISQKQMII 61
Query: 165 LLNQATDVINFWQTSGGNL 183
LLNQATD+IN WQ GG+L
Sbjct: 62 LLNQATDIINLWQQGGGSL 80
>gi|148907868|gb|ABR17057.1| unknown [Picea sitchensis]
Length = 205
Score = 129 bits (325), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 56/82 (68%), Positives = 67/82 (81%)
Query: 102 KRRLVLKFIWMQNDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDSKPWISQTE 161
K+R+VLKFIW++ +IG+ALDQV+PGHGTI LSPYYFWPRKDAWEELK L+S W+SQ
Sbjct: 124 KQRVVLKFIWLEKNIGLALDQVVPGHGTISLSPYYFWPRKDAWEELKAKLESISWVSQKR 183
Query: 162 RIHLLNQATDVINFWQTSGGNL 183
I LLNQA D+IN WQ G N+
Sbjct: 184 TIILLNQAMDIINLWQQVGSNI 205
>gi|302797480|ref|XP_002980501.1| hypothetical protein SELMODRAFT_112322 [Selaginella moellendorffii]
gi|300152117|gb|EFJ18761.1| hypothetical protein SELMODRAFT_112322 [Selaginella moellendorffii]
Length = 93
Score = 127 bits (318), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 58/95 (61%), Positives = 74/95 (77%), Gaps = 2/95 (2%)
Query: 89 RKEKLGVVVKPNEKRRLVLKFIWMQNDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELK 148
+K+KL + + K+ L L+F+WM+ +IGIALDQV+PGHGTIPLSP+YFWP+KDAWEELK
Sbjct: 1 QKDKLAI--RSAGKQILSLRFLWMEKNIGIALDQVVPGHGTIPLSPFYFWPKKDAWEELK 58
Query: 149 VLLDSKPWISQTERIHLLNQATDVINFWQTSGGNL 183
L+SKPWIS+ I LLNQATD+IN WQ +
Sbjct: 59 AKLESKPWISRRRTIILLNQATDIINLWQQKASSF 93
>gi|388508542|gb|AFK42337.1| unknown [Lotus japonicus]
Length = 73
Score = 125 bits (314), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 57/72 (79%), Positives = 63/72 (87%)
Query: 112 MQNDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDSKPWISQTERIHLLNQATD 171
M+ +IGIALDQ +PGH TIPLSPYYFWPRKDAWEELK LL+SKPWISQ + I LLNQATD
Sbjct: 1 MEKNIGIALDQAVPGHDTIPLSPYYFWPRKDAWEELKELLESKPWISQKQMIILLNQATD 60
Query: 172 VINFWQTSGGNL 183
+IN WQ SGGNL
Sbjct: 61 IINLWQQSGGNL 72
>gi|440801925|ref|YP_007317172.1| hypothetical protein RF65 (chloroplast) [Monomorphina aenigmatica]
gi|429484604|gb|AFZ88774.1| hypothetical protein RF65 (chloroplast) [Monomorphina aenigmatica]
Length = 101
Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 47/79 (59%), Positives = 63/79 (79%), Gaps = 1/79 (1%)
Query: 103 RRLVLKFIWMQNDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDSKPWISQTER 162
++ +LKF+W++ IG++LDQVI G + PL+ Y+FWP+KDAWEE+K L+SKPWISQTE
Sbjct: 2 KKFLLKFLWLERSIGVSLDQVI-GDRSTPLTEYFFWPQKDAWEEIKNFLESKPWISQTEA 60
Query: 163 IHLLNQATDVINFWQTSGG 181
I LLNQ T+VIN+WQ G
Sbjct: 61 ISLLNQITEVINYWQEKDG 79
>gi|11465817|ref|NP_053961.1| putative ribosomal protein 3 [Porphyra purpurea]
gi|1723407|sp|P51351.1|RRP3_PORPU RecName: Full=Probable 30S ribosomal protein 3, chloroplastic;
Short=PSRP-3
gi|1276817|gb|AAC08237.1| ORF99 (chloroplast) [Porphyra purpurea]
gi|378787388|gb|AFC40019.1| hypothetical protein [Porphyra umbilicalis]
Length = 99
Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 44/77 (57%), Positives = 62/77 (80%), Gaps = 1/77 (1%)
Query: 104 RLVLKFIWMQNDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDSKPWISQTERI 163
+ LK +W++N+I IA+DQ++ G+GT PL+ Y+FWPR DAWEELK L+SKPWI++ +RI
Sbjct: 3 KFTLKVLWLENNIAIAIDQIV-GNGTSPLTSYFFWPRNDAWEELKAELESKPWIAERDRI 61
Query: 164 HLLNQATDVINFWQTSG 180
LLN+ T+VIN+WQ G
Sbjct: 62 ELLNKTTEVINYWQEEG 78
>gi|428769715|ref|YP_007161505.1| 30S ribosomal protein 3 [Cyanobacterium aponinum PCC 10605]
gi|428683994|gb|AFZ53461.1| 30S ribosomal protein 3 [Cyanobacterium aponinum PCC 10605]
Length = 112
Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 47/85 (55%), Positives = 64/85 (75%), Gaps = 1/85 (1%)
Query: 97 VKPNEKRRLVLKFIWMQNDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDSKPW 156
++ N + R VLK +W+ ++ +A+D VI G PL+PYYFWPR DAW+ELK LD+K W
Sbjct: 9 LETNIEGRFVLKVVWLDKNVALAVDYVI-SKGISPLTPYYFWPRTDAWQELKDELDTKTW 67
Query: 157 ISQTERIHLLNQATDVINFWQTSGG 181
I++TE+I LLNQAT+VINFWQ + G
Sbjct: 68 ITETEKIELLNQATEVINFWQENAG 92
>gi|90994542|ref|YP_537032.1| putative ribosomal protein 3 [Pyropia yezoensis]
gi|122194667|sp|Q1XDD6.1|RRP3_PORYE RecName: Full=Probable 30S ribosomal protein 3, chloroplastic;
Short=PSRP-3
gi|90819106|dbj|BAE92475.1| unnamed protein product [Pyropia yezoensis]
Length = 102
Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 44/77 (57%), Positives = 62/77 (80%), Gaps = 1/77 (1%)
Query: 104 RLVLKFIWMQNDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDSKPWISQTERI 163
+ LK +W++N+I IA+DQ++ G+GT PL+ Y+FWPR DAWEELK L+SKPWI++ +RI
Sbjct: 8 KFTLKVLWLENNIAIAIDQIV-GNGTSPLTSYFFWPRNDAWEELKAELESKPWIAERDRI 66
Query: 164 HLLNQATDVINFWQTSG 180
LLN+ T+VIN+WQ G
Sbjct: 67 ELLNKTTEVINYWQEEG 83
>gi|428774177|ref|YP_007165965.1| ribosomal protein PSRP-3/Ycf65 [Cyanobacterium stanieri PCC 7202]
gi|428688456|gb|AFZ48316.1| ribosomal protein PSRP-3/Ycf65 [Cyanobacterium stanieri PCC 7202]
Length = 111
Score = 105 bits (263), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 47/84 (55%), Positives = 62/84 (73%), Gaps = 1/84 (1%)
Query: 97 VKPNEKRRLVLKFIWMQNDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDSKPW 156
++ N + R VLK +W+ D+ +A+D VI GT PL+PYYFWPR DAW++LK LD K W
Sbjct: 8 LETNIEGRFVLKVVWLDKDVALAVDYVI-SKGTSPLTPYYFWPRSDAWQDLKDELDKKNW 66
Query: 157 ISQTERIHLLNQATDVINFWQTSG 180
I+ TE+I LLNQAT++INFWQ G
Sbjct: 67 ITDTEKIELLNQATEIINFWQEKG 90
>gi|428215432|ref|YP_007088576.1| Plastid and cyanobacterial ribosomal protein (PSRP-3 / Ycf65)
[Oscillatoria acuminata PCC 6304]
gi|428003813|gb|AFY84656.1| Plastid and cyanobacterial ribosomal protein (PSRP-3 / Ycf65)
[Oscillatoria acuminata PCC 6304]
Length = 99
Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 43/77 (55%), Positives = 63/77 (81%), Gaps = 1/77 (1%)
Query: 104 RLVLKFIWMQNDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDSKPWISQTERI 163
+ +LK +W+++++ IA+DQV+ G GT PL+ Y+FWPR DAWEELK L++K WIS+T+R+
Sbjct: 3 KFILKVLWLEDNVAIAVDQVV-GKGTSPLTRYFFWPRNDAWEELKNELEAKHWISETDRV 61
Query: 164 HLLNQATDVINFWQTSG 180
LLN+AT+VIN+WQ G
Sbjct: 62 ELLNKATEVINYWQEEG 78
>gi|22297845|ref|NP_681092.1| hypothetical protein tlr0301 [Thermosynechococcus elongatus BP-1]
gi|28380122|sp|P59327.1|RRP3_THEEB RecName: Full=Probable 30S ribosomal protein PSRP-3; AltName:
Full=Ycf65-like protein
gi|22294022|dbj|BAC07854.1| ycf65 [Thermosynechococcus elongatus BP-1]
Length = 108
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 43/82 (52%), Positives = 60/82 (73%), Gaps = 1/82 (1%)
Query: 101 EKRRLVLKFIWMQNDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDSKPWISQT 160
E R L+ +W++ D+ IA+DQ++ G GT PL+ Y+FWPR DAWE LK L+ K WI++
Sbjct: 9 ELSRFTLRVLWLEKDVAIAVDQIV-GKGTSPLTSYFFWPRTDAWELLKAELEKKSWITEA 67
Query: 161 ERIHLLNQATDVINFWQTSGGN 182
ERI LLN+AT++IN+WQ G N
Sbjct: 68 ERIELLNRATEIINYWQEEGKN 89
>gi|427418325|ref|ZP_18908508.1| Plastid and cyanobacterial ribosomal protein (PSRP-3 / Ycf65)
[Leptolyngbya sp. PCC 7375]
gi|425761038|gb|EKV01891.1| Plastid and cyanobacterial ribosomal protein (PSRP-3 / Ycf65)
[Leptolyngbya sp. PCC 7375]
Length = 99
Score = 103 bits (258), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 41/77 (53%), Positives = 61/77 (79%), Gaps = 1/77 (1%)
Query: 104 RLVLKFIWMQNDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDSKPWISQTERI 163
R +LK +W+ D+ +A+DQV+ G G+ PL+ Y+FWPR DAW+++K+ L+SK WI++ ERI
Sbjct: 3 RFILKVLWLDKDVALAVDQVV-GKGSSPLTSYFFWPRNDAWDQMKIELESKTWIAEEERI 61
Query: 164 HLLNQATDVINFWQTSG 180
LLNQAT++IN+WQ G
Sbjct: 62 DLLNQATEIINYWQEGG 78
>gi|56751767|ref|YP_172468.1| hypothetical protein syc1758_d [Synechococcus elongatus PCC 6301]
gi|81301154|ref|YP_401362.1| hypothetical protein Synpcc7942_2345 [Synechococcus elongatus PCC
7942]
gi|6136560|sp|O05161.1|RRP3_SYNE7 RecName: Full=Probable 30S ribosomal protein PSRP-3; AltName:
Full=Ycf65-like protein
gi|81561751|sp|Q5N172.1|RRP3_SYNP6 RecName: Full=Probable 30S ribosomal protein PSRP-3; AltName:
Full=Ycf65-like protein
gi|1906544|gb|AAB50399.1| putative protein [Synechococcus elongatus PCC 7942]
gi|56686726|dbj|BAD79948.1| hypothetical protein YCF65 [Synechococcus elongatus PCC 6301]
gi|81170035|gb|ABB58375.1| conserved hypothetical protein YCF65 [Synechococcus elongatus PCC
7942]
Length = 112
Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 43/77 (55%), Positives = 58/77 (75%), Gaps = 1/77 (1%)
Query: 104 RLVLKFIWMQNDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDSKPWISQTERI 163
R +K +W+ ++ IA+DQV+ G T PL+ YYFWPR DAWE+LK L+SK WI++ ER+
Sbjct: 16 RFTIKILWLNENVAIAVDQVV-GKATSPLTAYYFWPRHDAWEQLKTELESKSWITEAERV 74
Query: 164 HLLNQATDVINFWQTSG 180
LLNQAT+VIN+WQ G
Sbjct: 75 ELLNQATEVINYWQEEG 91
>gi|427725711|ref|YP_007072988.1| 30S ribosomal protein 3 [Leptolyngbya sp. PCC 7376]
gi|427357431|gb|AFY40154.1| 30S ribosomal protein 3 [Leptolyngbya sp. PCC 7376]
Length = 100
Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 43/78 (55%), Positives = 62/78 (79%), Gaps = 1/78 (1%)
Query: 103 RRLVLKFIWMQNDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDSKPWISQTER 162
R +LK +W+ D+ IA+DQV+ G GT PL+ Y+FWPR DAW++LK +++K WIS++ER
Sbjct: 3 ERFLLKVLWLDKDVAIAVDQVV-GKGTSPLTAYFFWPRNDAWQQLKDEMEAKHWISESER 61
Query: 163 IHLLNQATDVINFWQTSG 180
I +LNQAT+VIN+WQ +G
Sbjct: 62 IDVLNQATEVINYWQENG 79
>gi|209525493|ref|ZP_03274032.1| ribosomal protein PSRP-3/Ycf65 [Arthrospira maxima CS-328]
gi|376001997|ref|ZP_09779848.1| putative 30S ribosomal protein PSRP-3 [Arthrospira sp. PCC 8005]
gi|409992960|ref|ZP_11276122.1| hypothetical protein APPUASWS_17715 [Arthrospira platensis str.
Paraca]
gi|423062096|ref|ZP_17050886.1| ribosomal protein PSRP-3/Ycf65 [Arthrospira platensis C1]
gi|209493992|gb|EDZ94308.1| ribosomal protein PSRP-3/Ycf65 [Arthrospira maxima CS-328]
gi|291568369|dbj|BAI90641.1| Ycf65 protein [Arthrospira platensis NIES-39]
gi|375329628|emb|CCE15601.1| putative 30S ribosomal protein PSRP-3 [Arthrospira sp. PCC 8005]
gi|406716438|gb|EKD11588.1| ribosomal protein PSRP-3/Ycf65 [Arthrospira platensis C1]
gi|409936175|gb|EKN77677.1| hypothetical protein APPUASWS_17715 [Arthrospira platensis str.
Paraca]
Length = 99
Score = 103 bits (256), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 44/77 (57%), Positives = 61/77 (79%), Gaps = 1/77 (1%)
Query: 104 RLVLKFIWMQNDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDSKPWISQTERI 163
R +LK +W+ +++ +A+DQV+ G G+ PL+ Y+FWPRKDAWEELK L+SK WI+ ERI
Sbjct: 3 RFILKVLWLDDNVALAVDQVV-GKGSSPLTSYFFWPRKDAWEELKNELESKRWINDVERI 61
Query: 164 HLLNQATDVINFWQTSG 180
LLN+AT+VIN+WQ G
Sbjct: 62 ELLNKATEVINYWQEEG 78
>gi|170077374|ref|YP_001734012.1| hypothetical protein SYNPCC7002_A0751 [Synechococcus sp. PCC 7002]
gi|169885043|gb|ACA98756.1| probable 30S ribosomal protein PSRP-3 [Synechococcus sp. PCC 7002]
Length = 100
Score = 103 bits (256), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 44/78 (56%), Positives = 60/78 (76%), Gaps = 1/78 (1%)
Query: 103 RRLVLKFIWMQNDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDSKPWISQTER 162
R +LK +W+ D+ IA+DQV+ G GT PL+ Y+FWPR DAW++LK L++K WIS+ ER
Sbjct: 3 ERFLLKVLWLDKDVAIAVDQVV-GKGTSPLTAYFFWPRNDAWQQLKDELEAKHWISEAER 61
Query: 163 IHLLNQATDVINFWQTSG 180
I +LNQAT+VIN+WQ G
Sbjct: 62 IEVLNQATEVINYWQEHG 79
>gi|427707892|ref|YP_007050269.1| 30S ribosomal protein 3 [Nostoc sp. PCC 7107]
gi|427360397|gb|AFY43119.1| 30S ribosomal protein 3 [Nostoc sp. PCC 7107]
Length = 99
Score = 103 bits (256), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 42/79 (53%), Positives = 63/79 (79%), Gaps = 1/79 (1%)
Query: 104 RLVLKFIWMQNDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDSKPWISQTERI 163
+ +LK +W+++++ +A+DQV+ G GT PL+ Y+FWPR DAWEELK L+SK WI++ +R+
Sbjct: 3 KFILKILWLEDNVALAVDQVV-GKGTSPLTKYFFWPRNDAWEELKKELESKHWITELDRV 61
Query: 164 HLLNQATDVINFWQTSGGN 182
LLN+AT+VIN+WQ G N
Sbjct: 62 ELLNKATEVINYWQEEGRN 80
>gi|428206812|ref|YP_007091165.1| ribosomal protein PSRP-3/Ycf65 [Chroococcidiopsis thermalis PCC
7203]
gi|428008733|gb|AFY87296.1| ribosomal protein PSRP-3/Ycf65 [Chroococcidiopsis thermalis PCC
7203]
Length = 99
Score = 102 bits (255), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 41/77 (53%), Positives = 61/77 (79%), Gaps = 1/77 (1%)
Query: 104 RLVLKFIWMQNDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDSKPWISQTERI 163
+ +LK +W++ ++ +A+DQV+ G GT PL+ Y+FWPR DAWEELK L+SK WI++ ER+
Sbjct: 3 KFILKVLWLEENVALAVDQVV-GKGTSPLTKYFFWPRNDAWEELKKELESKSWITEQERV 61
Query: 164 HLLNQATDVINFWQTSG 180
LLN++T+VIN+WQ G
Sbjct: 62 ELLNKSTEVINYWQEEG 78
>gi|254414667|ref|ZP_05028432.1| Plastid and cyanobacterial ribosomal protein (PSRP-3 / Ycf65)
[Coleofasciculus chthonoplastes PCC 7420]
gi|196178515|gb|EDX73514.1| Plastid and cyanobacterial ribosomal protein (PSRP-3 / Ycf65)
[Coleofasciculus chthonoplastes PCC 7420]
Length = 99
Score = 102 bits (253), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 41/79 (51%), Positives = 62/79 (78%), Gaps = 1/79 (1%)
Query: 104 RLVLKFIWMQNDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDSKPWISQTERI 163
+ +LK +W++ ++ +A+DQV+ G GT PL+ Y+FWPR DAWE++K L++K WIS+ +R+
Sbjct: 3 KFILKVLWLEENVALAVDQVV-GKGTSPLTSYFFWPRNDAWEQIKNELEAKHWISEMDRV 61
Query: 164 HLLNQATDVINFWQTSGGN 182
LLNQAT+VIN+WQ G N
Sbjct: 62 ELLNQATEVINYWQEEGKN 80
>gi|434394881|ref|YP_007129828.1| 30S ribosomal protein 3 [Gloeocapsa sp. PCC 7428]
gi|428266722|gb|AFZ32668.1| 30S ribosomal protein 3 [Gloeocapsa sp. PCC 7428]
Length = 99
Score = 102 bits (253), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 43/79 (54%), Positives = 60/79 (75%), Gaps = 1/79 (1%)
Query: 104 RLVLKFIWMQNDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDSKPWISQTERI 163
+ +LK +W+ ++ +A+DQV+ G GT PL+ Y+FWPR DAWEELK L+SK WI+ ER+
Sbjct: 3 KFILKVLWLDENVALAVDQVV-GKGTSPLTRYFFWPRNDAWEELKNELESKNWITDQERV 61
Query: 164 HLLNQATDVINFWQTSGGN 182
LLN+AT+VIN+WQ G N
Sbjct: 62 ELLNKATEVINYWQEEGRN 80
>gi|33861996|ref|NP_893557.1| hypothetical protein PMM1440 [Prochlorococcus marinus subsp.
pastoris str. CCMP1986]
gi|33640364|emb|CAE19899.1| conserved hypothetical protein [Prochlorococcus marinus subsp.
pastoris str. CCMP1986]
Length = 158
Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 42/87 (48%), Positives = 65/87 (74%), Gaps = 2/87 (2%)
Query: 94 GVVVKPNEKRRLVLKFIWMQNDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDS 153
G KP+E R ++K +W+ +++ +A+DQ++ G G+ PL+ YYFWPR DAWE+LK L++
Sbjct: 53 GYTPKPDEGR-FIIKILWLPDNVALAVDQIV-GGGSSPLTAYYFWPRDDAWEKLKSELEN 110
Query: 154 KPWISQTERIHLLNQATDVINFWQTSG 180
K WI+ ER+ +LN+AT+VIN+WQ G
Sbjct: 111 KSWITDNERVEILNKATEVINYWQEEG 137
>gi|428225729|ref|YP_007109826.1| ribosomal protein PSRP-3/Ycf65 [Geitlerinema sp. PCC 7407]
gi|427985630|gb|AFY66774.1| ribosomal protein PSRP-3/Ycf65 [Geitlerinema sp. PCC 7407]
Length = 99
Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 41/79 (51%), Positives = 60/79 (75%), Gaps = 1/79 (1%)
Query: 104 RLVLKFIWMQNDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDSKPWISQTERI 163
R +LK +W+ ++ +A+DQ++ G GT PL+ Y+FWPR DAWE+LK L++K WI+ ER+
Sbjct: 3 RFILKVLWLDENVALAVDQIV-GKGTSPLTSYFFWPRNDAWEQLKTELEAKHWITDNERV 61
Query: 164 HLLNQATDVINFWQTSGGN 182
LLN+AT+VIN+WQ G N
Sbjct: 62 ELLNKATEVINYWQEEGRN 80
>gi|282896618|ref|ZP_06304633.1| ribosomal protein PSRP-3/Ycf65 [Raphidiopsis brookii D9]
gi|281198488|gb|EFA73374.1| ribosomal protein PSRP-3/Ycf65 [Raphidiopsis brookii D9]
Length = 99
Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 43/79 (54%), Positives = 61/79 (77%), Gaps = 1/79 (1%)
Query: 104 RLVLKFIWMQNDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDSKPWISQTERI 163
+ +LK +W+ +++ +A+DQV+ G GT PL+ Y+FWPR DAWEELK L+SK WIS +R+
Sbjct: 3 KFILKILWLDDNVALAVDQVV-GKGTSPLTKYFFWPRNDAWEELKKELESKHWISNPDRV 61
Query: 164 HLLNQATDVINFWQTSGGN 182
LLN+AT+VIN+WQ G N
Sbjct: 62 ELLNKATEVINYWQEEGKN 80
>gi|220905907|ref|YP_002481218.1| hypothetical protein Cyan7425_0465 [Cyanothece sp. PCC 7425]
gi|259494580|sp|B8HTT7.1|RRP3_CYAP4 RecName: Full=Probable 30S ribosomal protein PSRP-3; AltName:
Full=Ycf65-like protein
gi|219862518|gb|ACL42857.1| ribosomal protein PSRP-3/Ycf65 [Cyanothece sp. PCC 7425]
Length = 109
Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 42/79 (53%), Positives = 61/79 (77%), Gaps = 1/79 (1%)
Query: 104 RLVLKFIWMQNDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDSKPWISQTERI 163
+ +LK +W+ +++ +A+DQV+ G GT PL+ Y+FWPR DAWE+LK L+ K WIS+ +RI
Sbjct: 13 QFILKVLWLDSNVALAVDQVV-GKGTSPLTSYFFWPRADAWEQLKTELEKKTWISEADRI 71
Query: 164 HLLNQATDVINFWQTSGGN 182
LLN+ATD+IN+WQ G N
Sbjct: 72 ALLNRATDIINYWQEEGRN 90
>gi|354564800|ref|ZP_08983976.1| 30S ribosomal protein 3 [Fischerella sp. JSC-11]
gi|353549926|gb|EHC19365.1| 30S ribosomal protein 3 [Fischerella sp. JSC-11]
Length = 99
Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 42/79 (53%), Positives = 61/79 (77%), Gaps = 1/79 (1%)
Query: 104 RLVLKFIWMQNDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDSKPWISQTERI 163
+ +LK +W+ ++ +A+DQV+ G GT PL+ Y+FWPR DAWEELK L+SK WI++ +R+
Sbjct: 3 KFILKILWLDENVALAVDQVV-GKGTSPLTKYFFWPRNDAWEELKKELESKHWITEVDRV 61
Query: 164 HLLNQATDVINFWQTSGGN 182
LLN+AT+VIN+WQ G N
Sbjct: 62 ELLNKATEVINYWQEEGRN 80
>gi|282899704|ref|ZP_06307668.1| ribosomal protein PSRP-3/Ycf65 [Cylindrospermopsis raciborskii
CS-505]
gi|281195583|gb|EFA70516.1| ribosomal protein PSRP-3/Ycf65 [Cylindrospermopsis raciborskii
CS-505]
Length = 99
Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 43/79 (54%), Positives = 61/79 (77%), Gaps = 1/79 (1%)
Query: 104 RLVLKFIWMQNDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDSKPWISQTERI 163
+ +LK +W+ +++ +A+DQV+ G GT PL+ Y+FWPR DAWEELK L+SK WIS +R+
Sbjct: 3 KFILKILWLDDNVALAVDQVV-GKGTSPLTKYFFWPRNDAWEELKKELESKHWISDPDRV 61
Query: 164 HLLNQATDVINFWQTSGGN 182
LLN+AT+VIN+WQ G N
Sbjct: 62 ELLNKATEVINYWQEEGKN 80
>gi|427732246|ref|YP_007078483.1| Plastid and cyanobacterial ribosomal protein (PSRP-3 / Ycf65)
[Nostoc sp. PCC 7524]
gi|427368165|gb|AFY50886.1| Plastid and cyanobacterial ribosomal protein (PSRP-3 / Ycf65)
[Nostoc sp. PCC 7524]
Length = 99
Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 43/79 (54%), Positives = 60/79 (75%), Gaps = 1/79 (1%)
Query: 104 RLVLKFIWMQNDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDSKPWISQTERI 163
+ +LK +W+ ++ +A+DQV+ G GT PL+ Y+FWPR DAWEELK L+SK WIS +R+
Sbjct: 3 KFILKILWLDENVALAVDQVV-GKGTSPLTKYFFWPRNDAWEELKKELESKHWISDIDRV 61
Query: 164 HLLNQATDVINFWQTSGGN 182
LLN+AT+VIN+WQ G N
Sbjct: 62 ELLNKATEVINYWQEEGRN 80
>gi|75910070|ref|YP_324366.1| hypothetical protein Ava_3866 [Anabaena variabilis ATCC 29413]
gi|123608509|sp|Q3M6B5.1|RRP3_ANAVT RecName: Full=Probable 30S ribosomal protein PSRP-3; AltName:
Full=Ycf65-like protein
gi|75703795|gb|ABA23471.1| ribosomal protein PSRP-3/Ycf65 [Anabaena variabilis ATCC 29413]
Length = 99
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 43/79 (54%), Positives = 60/79 (75%), Gaps = 1/79 (1%)
Query: 104 RLVLKFIWMQNDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDSKPWISQTERI 163
+ +LK +W+ ++ +A+DQV+ G GT PL+ Y+FWPR DAWEELK L+SK WIS +R+
Sbjct: 3 KFILKILWLDENVALAVDQVV-GKGTSPLTKYFFWPRNDAWEELKKELESKHWISDLDRV 61
Query: 164 HLLNQATDVINFWQTSGGN 182
LLN+AT+VIN+WQ G N
Sbjct: 62 ELLNKATEVINYWQEEGRN 80
>gi|27923871|sp|Q8YSC1.2|RRP3_ANASP RecName: Full=Probable 30S ribosomal protein PSRP-3; AltName:
Full=Ycf65-like protein
Length = 99
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 43/79 (54%), Positives = 60/79 (75%), Gaps = 1/79 (1%)
Query: 104 RLVLKFIWMQNDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDSKPWISQTERI 163
+ +LK +W+ ++ +A+DQV+ G GT PL+ Y+FWPR DAWEELK L+SK WIS +R+
Sbjct: 3 KFILKILWLDENVALAVDQVV-GKGTSPLTKYFFWPRNDAWEELKKELESKHWISDLDRV 61
Query: 164 HLLNQATDVINFWQTSGGN 182
LLN+AT+VIN+WQ G N
Sbjct: 62 ELLNKATEVINYWQEEGRN 80
>gi|119485215|ref|ZP_01619600.1| hypothetical protein L8106_07194 [Lyngbya sp. PCC 8106]
gi|119457443|gb|EAW38568.1| hypothetical protein L8106_07194 [Lyngbya sp. PCC 8106]
Length = 105
Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 41/77 (53%), Positives = 60/77 (77%), Gaps = 1/77 (1%)
Query: 104 RLVLKFIWMQNDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDSKPWISQTERI 163
R VLK +W+ +++ +A+DQ++ G G+ PL+ Y+FWPR DAWE+LK ++SK WIS ER+
Sbjct: 9 RFVLKVLWLDDNVALAVDQIV-GKGSSPLTSYFFWPRNDAWEQLKTEMESKRWISDIERV 67
Query: 164 HLLNQATDVINFWQTSG 180
LLN+AT+VIN+WQ G
Sbjct: 68 ELLNKATEVINYWQEEG 84
>gi|298490925|ref|YP_003721102.1| ribosomal protein PSRP-3/Ycf65 ['Nostoc azollae' 0708]
gi|440680241|ref|YP_007155036.1| 30S ribosomal protein 3 [Anabaena cylindrica PCC 7122]
gi|298232843|gb|ADI63979.1| ribosomal protein PSRP-3/Ycf65 ['Nostoc azollae' 0708]
gi|428677360|gb|AFZ56126.1| 30S ribosomal protein 3 [Anabaena cylindrica PCC 7122]
Length = 99
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 42/79 (53%), Positives = 60/79 (75%), Gaps = 1/79 (1%)
Query: 104 RLVLKFIWMQNDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDSKPWISQTERI 163
+ +LK +W+ ++ +A+DQV+ G GT PL+ Y+FWPR DAWEELK L+SK WI+ +R+
Sbjct: 3 KFILKILWLDENVALAVDQVV-GKGTSPLTKYFFWPRNDAWEELKKELESKHWITDVDRV 61
Query: 164 HLLNQATDVINFWQTSGGN 182
LLN+AT+VIN+WQ G N
Sbjct: 62 ELLNKATEVINYWQEEGRN 80
>gi|427717914|ref|YP_007065908.1| 30S ribosomal protein 3 [Calothrix sp. PCC 7507]
gi|427350350|gb|AFY33074.1| 30S ribosomal protein 3 [Calothrix sp. PCC 7507]
Length = 99
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 42/79 (53%), Positives = 60/79 (75%), Gaps = 1/79 (1%)
Query: 104 RLVLKFIWMQNDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDSKPWISQTERI 163
+ +LK +W+ ++ +A+DQV+ G GT PL+ Y+FWPR DAWEELK L+SK WI+ +R+
Sbjct: 3 KFILKILWLDENVALAVDQVV-GKGTSPLTKYFFWPRNDAWEELKKELESKNWITDLDRV 61
Query: 164 HLLNQATDVINFWQTSGGN 182
LLN+AT+VIN+WQ G N
Sbjct: 62 ELLNKATEVINYWQEEGRN 80
>gi|443319368|ref|ZP_21048601.1| Plastid and cyanobacterial ribosomal protein (PSRP-3 / Ycf65)
[Leptolyngbya sp. PCC 6406]
gi|442781055|gb|ELR91162.1| Plastid and cyanobacterial ribosomal protein (PSRP-3 / Ycf65)
[Leptolyngbya sp. PCC 6406]
Length = 104
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 58/77 (75%), Gaps = 1/77 (1%)
Query: 104 RLVLKFIWMQNDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDSKPWISQTERI 163
R +LK +W+ D+ +A+DQV+ G G+ PL+ Y+FWPR DAWE++K L+ K WIS ER+
Sbjct: 8 RFILKVLWLDKDVALAVDQVV-GKGSSPLTSYFFWPRNDAWEQMKTELEQKSWISDEERV 66
Query: 164 HLLNQATDVINFWQTSG 180
LLN+AT++IN+WQ G
Sbjct: 67 DLLNKATEIINYWQEDG 83
>gi|434406356|ref|YP_007149241.1| Plastid and cyanobacterial ribosomal protein (PSRP-3 / Ycf65)
[Cylindrospermum stagnale PCC 7417]
gi|428260611|gb|AFZ26561.1| Plastid and cyanobacterial ribosomal protein (PSRP-3 / Ycf65)
[Cylindrospermum stagnale PCC 7417]
Length = 99
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 42/79 (53%), Positives = 60/79 (75%), Gaps = 1/79 (1%)
Query: 104 RLVLKFIWMQNDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDSKPWISQTERI 163
+ +LK +W+ ++ +A+DQV+ G GT PL+ Y+FWPR DAWEELK L+SK WI+ +R+
Sbjct: 3 KFILKILWLDENVALAVDQVV-GKGTSPLTKYFFWPRNDAWEELKKELESKHWITDLDRV 61
Query: 164 HLLNQATDVINFWQTSGGN 182
LLN+AT+VIN+WQ G N
Sbjct: 62 ELLNKATEVINYWQEEGRN 80
>gi|148242962|ref|YP_001228119.1| hypothetical protein SynRCC307_1863 [Synechococcus sp. RCC307]
gi|147851272|emb|CAK28766.1| Probable 30S ribosomal protein PSRP-3 (Ycf65-like protein)
[Synechococcus sp. RCC307]
Length = 158
Score = 100 bits (249), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 39/80 (48%), Positives = 62/80 (77%), Gaps = 1/80 (1%)
Query: 101 EKRRLVLKFIWMQNDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDSKPWISQT 160
++ R +LK +W+ ++ +A+DQ++ G G PL+ Y+FWPR+DAWE LK +L+SK WI++
Sbjct: 59 DEGRFLLKILWLPENVALAVDQIV-GGGPSPLTAYFFWPREDAWETLKSVLESKSWITEN 117
Query: 161 ERIHLLNQATDVINFWQTSG 180
ER+ +LN+AT+VIN+WQ G
Sbjct: 118 ERVEVLNKATEVINYWQEEG 137
>gi|300867948|ref|ZP_07112588.1| putative 30S ribosomal protein PSRP-3 [Oscillatoria sp. PCC 6506]
gi|300334085|emb|CBN57766.1| putative 30S ribosomal protein PSRP-3 [Oscillatoria sp. PCC 6506]
Length = 108
Score = 100 bits (249), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 61/77 (79%), Gaps = 1/77 (1%)
Query: 104 RLVLKFIWMQNDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDSKPWISQTERI 163
+ +LK +W++ ++ +A+DQV+ G GT PL+ Y+FWPRKDAWEELK L++K WI+ +R+
Sbjct: 12 KFILKVLWLEENVALAVDQVV-GKGTSPLTAYFFWPRKDAWEELKNELEAKHWIADNDRV 70
Query: 164 HLLNQATDVINFWQTSG 180
+LN+AT+VIN+WQ G
Sbjct: 71 EILNKATEVINYWQEEG 87
>gi|428310962|ref|YP_007121939.1| Plastid and cyanobacterial ribosomal protein (PSRP-3 / Ycf65)
[Microcoleus sp. PCC 7113]
gi|428252574|gb|AFZ18533.1| Plastid and cyanobacterial ribosomal protein (PSRP-3 / Ycf65)
[Microcoleus sp. PCC 7113]
Length = 99
Score = 100 bits (249), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 41/77 (53%), Positives = 62/77 (80%), Gaps = 1/77 (1%)
Query: 104 RLVLKFIWMQNDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDSKPWISQTERI 163
+ +LK +W++ ++ +A+DQV+ G GT PL+ Y+FWPR DAWE+LK L++K WIS+++RI
Sbjct: 3 KFILKVLWLEENVALAVDQVV-GKGTSPLTSYFFWPRNDAWEQLKNELEAKHWISESDRI 61
Query: 164 HLLNQATDVINFWQTSG 180
LLN+AT+VIN+WQ G
Sbjct: 62 DLLNKATEVINYWQEEG 78
>gi|254527056|ref|ZP_05139108.1| ribosomal protein psrp-3/Ycf65 [Prochlorococcus marinus str. MIT
9202]
gi|221538480|gb|EEE40933.1| ribosomal protein psrp-3/Ycf65 [Prochlorococcus marinus str. MIT
9202]
Length = 158
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 42/87 (48%), Positives = 64/87 (73%), Gaps = 2/87 (2%)
Query: 94 GVVVKPNEKRRLVLKFIWMQNDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDS 153
G KP+E R ++K +W+ +++ +A+DQ++ G G PL+ YYFWPR DAWE+LK L++
Sbjct: 53 GYTPKPDEGR-FIIKVLWLPDNVALAVDQIV-GGGPSPLTAYYFWPRDDAWEKLKSELEN 110
Query: 154 KPWISQTERIHLLNQATDVINFWQTSG 180
K WI+ ER+ +LN+AT+VIN+WQ G
Sbjct: 111 KGWITDNERVEILNKATEVINYWQEEG 137
>gi|157414041|ref|YP_001484907.1| hypothetical protein P9215_17081 [Prochlorococcus marinus str. MIT
9215]
gi|157388616|gb|ABV51321.1| Conserved hypothetical protein [Prochlorococcus marinus str. MIT
9215]
Length = 158
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 42/87 (48%), Positives = 64/87 (73%), Gaps = 2/87 (2%)
Query: 94 GVVVKPNEKRRLVLKFIWMQNDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDS 153
G KP+E R ++K +W+ +++ +A+DQ++ G G PL+ YYFWPR DAWE+LK L++
Sbjct: 53 GYTPKPDEGR-FIIKVLWLPDNVALAVDQIV-GGGPSPLTAYYFWPRDDAWEKLKSELEN 110
Query: 154 KPWISQTERIHLLNQATDVINFWQTSG 180
K WI+ ER+ +LN+AT+VIN+WQ G
Sbjct: 111 KGWITDNERVEILNKATEVINYWQEEG 137
>gi|123966852|ref|YP_001011933.1| hypothetical protein P9515_16191 [Prochlorococcus marinus str. MIT
9515]
gi|123201218|gb|ABM72826.1| conserved hypothetical protein [Prochlorococcus marinus str. MIT
9515]
Length = 158
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 42/87 (48%), Positives = 64/87 (73%), Gaps = 2/87 (2%)
Query: 94 GVVVKPNEKRRLVLKFIWMQNDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDS 153
G KP+E R ++K +W+ +++ +A+DQ++ G G PL+ YYFWPR DAWE+LK L++
Sbjct: 53 GYTPKPDEGR-FIIKILWLPDNVALAVDQIV-GGGPSPLTAYYFWPRDDAWEKLKSELEN 110
Query: 154 KPWISQTERIHLLNQATDVINFWQTSG 180
K WI+ ER+ +LN+AT+VIN+WQ G
Sbjct: 111 KSWITDNERVEILNKATEVINYWQEEG 137
>gi|46577386|sp|Q7V048.2|RRP3_PROMP RecName: Full=Probable 30S ribosomal protein PSRP-3; AltName:
Full=Ycf65-like protein
Length = 126
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 42/87 (48%), Positives = 65/87 (74%), Gaps = 2/87 (2%)
Query: 94 GVVVKPNEKRRLVLKFIWMQNDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDS 153
G KP+E R ++K +W+ +++ +A+DQ++ G G+ PL+ YYFWPR DAWE+LK L++
Sbjct: 21 GYTPKPDEGR-FIIKILWLPDNVALAVDQIV-GGGSSPLTAYYFWPRDDAWEKLKSELEN 78
Query: 154 KPWISQTERIHLLNQATDVINFWQTSG 180
K WI+ ER+ +LN+AT+VIN+WQ G
Sbjct: 79 KSWITDNERVEILNKATEVINYWQEEG 105
>gi|91070182|gb|ABE11103.1| conserved hypothetical protein [uncultured Prochlorococcus marinus
clone HF10-11D6]
Length = 158
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 42/87 (48%), Positives = 64/87 (73%), Gaps = 2/87 (2%)
Query: 94 GVVVKPNEKRRLVLKFIWMQNDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDS 153
G KP+E R ++K +W+ +++ +A+DQ++ G G PL+ YYFWPR DAWE+LK L++
Sbjct: 53 GYTPKPDEGR-FIIKVLWLPDNVALAVDQIV-GGGPSPLTAYYFWPRDDAWEKLKSELEN 110
Query: 154 KPWISQTERIHLLNQATDVINFWQTSG 180
K WI+ ER+ +LN+AT+VIN+WQ G
Sbjct: 111 KGWITDNERVEILNKATEVINYWQEEG 137
>gi|411118948|ref|ZP_11391328.1| Plastid and cyanobacterial ribosomal protein (PSRP-3 / Ycf65)
[Oscillatoriales cyanobacterium JSC-12]
gi|410710811|gb|EKQ68318.1| Plastid and cyanobacterial ribosomal protein (PSRP-3 / Ycf65)
[Oscillatoriales cyanobacterium JSC-12]
Length = 99
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 40/79 (50%), Positives = 62/79 (78%), Gaps = 1/79 (1%)
Query: 104 RLVLKFIWMQNDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDSKPWISQTERI 163
+ +LK +W++ D+ +A+DQV+ G GT PL+ Y+FWPR DAWE+LK L++K WI++ +R+
Sbjct: 3 KFILKVLWLEKDVALAVDQVV-GKGTSPLTSYFFWPRNDAWEQLKNELEAKHWITEVDRV 61
Query: 164 HLLNQATDVINFWQTSGGN 182
LLN+AT+VIN+WQ G +
Sbjct: 62 ELLNKATEVINYWQEEGKD 80
>gi|126696968|ref|YP_001091854.1| hypothetical protein P9301_16301 [Prochlorococcus marinus str. MIT
9301]
gi|126544011|gb|ABO18253.1| conserved hypothetical protein [Prochlorococcus marinus str. MIT
9301]
Length = 158
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 42/87 (48%), Positives = 64/87 (73%), Gaps = 2/87 (2%)
Query: 94 GVVVKPNEKRRLVLKFIWMQNDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDS 153
G KP+E R ++K +W+ +++ +A+DQ++ G G PL+ YYFWPR DAWE+LK L++
Sbjct: 53 GYTPKPDE-GRFIIKVLWLPDNVALAVDQIV-GGGPSPLTAYYFWPRDDAWEKLKSELEN 110
Query: 154 KPWISQTERIHLLNQATDVINFWQTSG 180
K WI+ ER+ +LN+AT+VIN+WQ G
Sbjct: 111 KGWITDNERVEILNKATEVINYWQEEG 137
>gi|123969174|ref|YP_001010032.1| hypothetical protein A9601_16421 [Prochlorococcus marinus str.
AS9601]
gi|123199284|gb|ABM70925.1| conserved hypothetical protein [Prochlorococcus marinus str.
AS9601]
Length = 158
Score = 100 bits (248), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 42/87 (48%), Positives = 64/87 (73%), Gaps = 2/87 (2%)
Query: 94 GVVVKPNEKRRLVLKFIWMQNDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDS 153
G KP+E R ++K +W+ +++ +A+DQ++ G G PL+ YYFWPR DAWE+LK L++
Sbjct: 53 GYTPKPDEGR-FIIKVLWLPDNVALAVDQIV-GGGPSPLTAYYFWPRDDAWEKLKSELEN 110
Query: 154 KPWISQTERIHLLNQATDVINFWQTSG 180
K WI+ ER+ +LN+AT+VIN+WQ G
Sbjct: 111 KGWITDNERVEILNKATEVINYWQEEG 137
>gi|428318975|ref|YP_007116857.1| 30S ribosomal protein 3 [Oscillatoria nigro-viridis PCC 7112]
gi|428242655|gb|AFZ08441.1| 30S ribosomal protein 3 [Oscillatoria nigro-viridis PCC 7112]
Length = 99
Score = 100 bits (248), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 61/77 (79%), Gaps = 1/77 (1%)
Query: 104 RLVLKFIWMQNDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDSKPWISQTERI 163
+ +LK +W++ ++ +A+DQV+ G GT PL+ Y+FWPRKDAWE+LK L++K WI+ +R+
Sbjct: 3 KFILKVLWLEENVALAVDQVV-GKGTSPLTSYFFWPRKDAWEDLKNELEAKHWIADNDRV 61
Query: 164 HLLNQATDVINFWQTSG 180
+LNQAT+VIN+WQ G
Sbjct: 62 EILNQATEVINYWQEEG 78
>gi|428200763|ref|YP_007079352.1| Plastid and cyanobacterial ribosomal protein (PSRP-3 / Ycf65)
[Pleurocapsa sp. PCC 7327]
gi|427978195|gb|AFY75795.1| Plastid and cyanobacterial ribosomal protein (PSRP-3 / Ycf65)
[Pleurocapsa sp. PCC 7327]
Length = 103
Score = 100 bits (248), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 42/74 (56%), Positives = 59/74 (79%), Gaps = 1/74 (1%)
Query: 104 RLVLKFIWMQNDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDSKPWISQTERI 163
R +LK +W+ ++ IA+DQV+ G GT PL+ YYFWPR DAW++LK L++K WI++ ERI
Sbjct: 4 RFILKVLWLDQNVAIAVDQVV-GKGTSPLTVYYFWPRNDAWQQLKEELEAKHWIAENERI 62
Query: 164 HLLNQATDVINFWQ 177
+LN+AT+VINFWQ
Sbjct: 63 EILNKATEVINFWQ 76
>gi|427711323|ref|YP_007059947.1| Plastid and cyanobacterial ribosomal protein (PSRP-3 / Ycf65)
[Synechococcus sp. PCC 6312]
gi|427375452|gb|AFY59404.1| Plastid and cyanobacterial ribosomal protein (PSRP-3 / Ycf65)
[Synechococcus sp. PCC 6312]
Length = 99
Score = 100 bits (248), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 40/79 (50%), Positives = 60/79 (75%), Gaps = 1/79 (1%)
Query: 104 RLVLKFIWMQNDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDSKPWISQTERI 163
+ +LK +W++ ++ IA+DQV+ G GT PL+ Y+FWPR DAWE LK ++ K WI++ ERI
Sbjct: 3 KYILKVLWLEKNVAIAVDQVV-GKGTSPLTSYFFWPRSDAWELLKTEIEGKSWITEAERI 61
Query: 164 HLLNQATDVINFWQTSGGN 182
+LN+AT++IN+WQ G N
Sbjct: 62 EILNRATEIINYWQEEGNN 80
>gi|334117129|ref|ZP_08491221.1| 30S ribosomal protein 3 [Microcoleus vaginatus FGP-2]
gi|333461949|gb|EGK90554.1| 30S ribosomal protein 3 [Microcoleus vaginatus FGP-2]
Length = 99
Score = 100 bits (248), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 61/77 (79%), Gaps = 1/77 (1%)
Query: 104 RLVLKFIWMQNDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDSKPWISQTERI 163
+ +LK +W++ ++ +A+DQV+ G GT PL+ Y+FWPRKDAWE+LK L++K WI+ +R+
Sbjct: 3 KFILKVLWLEENVALAVDQVV-GKGTSPLTSYFFWPRKDAWEDLKNELEAKHWIADNDRV 61
Query: 164 HLLNQATDVINFWQTSG 180
+LNQAT+VIN+WQ G
Sbjct: 62 EILNQATEVINYWQEEG 78
>gi|149072103|ref|YP_001293487.1| ORF99 [Rhodomonas salina]
gi|134303054|gb|ABO70858.1| ORF99 [Rhodomonas salina]
Length = 99
Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 38/77 (49%), Positives = 62/77 (80%), Gaps = 1/77 (1%)
Query: 104 RLVLKFIWMQNDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDSKPWISQTERI 163
+ LK +W+ N++ +A+DQV+ G+GT PL+ Y+FWPR DAWE++K L++KPWIS+ E++
Sbjct: 3 KFTLKVLWLDNNVALAVDQVV-GNGTSPLTCYFFWPRNDAWEQIKAELEAKPWISEREKV 61
Query: 164 HLLNQATDVINFWQTSG 180
+LN++T++IN+WQ G
Sbjct: 62 EILNKSTEIINYWQEQG 78
>gi|428776561|ref|YP_007168348.1| ribosomal protein PSRP-3/Ycf65 [Halothece sp. PCC 7418]
gi|428690840|gb|AFZ44134.1| ribosomal protein PSRP-3/Ycf65 [Halothece sp. PCC 7418]
Length = 107
Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 42/81 (51%), Positives = 62/81 (76%), Gaps = 1/81 (1%)
Query: 97 VKPNEKRRLVLKFIWMQNDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDSKPW 156
V+ + + R +LK +W+ ++ +A+D V+ G GT PL+ Y+FWPR DAWE+LK L+SK W
Sbjct: 4 VEVSSESRFILKVLWLDENVAVAVDHVV-GKGTSPLTAYFFWPRNDAWEQLKEELESKSW 62
Query: 157 ISQTERIHLLNQATDVINFWQ 177
I++ E+I LLNQAT+VIN+WQ
Sbjct: 63 ITEEEKIDLLNQATEVINYWQ 83
>gi|78184079|ref|YP_376514.1| hypothetical protein Syncc9902_0502 [Synechococcus sp. CC9902]
gi|78168373|gb|ABB25470.1| conserved hypothetical protein [Synechococcus sp. CC9902]
Length = 184
Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 39/80 (48%), Positives = 60/80 (75%), Gaps = 1/80 (1%)
Query: 101 EKRRLVLKFIWMQNDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDSKPWISQT 160
++ R +LK +W+ +++ +A+DQ++ G G PL+ Y+FWPR+DAWE LK L+ K WI+
Sbjct: 85 DEGRFLLKILWLPDNVALAVDQIV-GGGPSPLTSYFFWPREDAWETLKTELEGKSWITDN 143
Query: 161 ERIHLLNQATDVINFWQTSG 180
ER+ +LNQAT+VIN+WQ G
Sbjct: 144 ERVEVLNQATEVINYWQEEG 163
>gi|78213688|ref|YP_382467.1| hypothetical protein Syncc9605_2173 [Synechococcus sp. CC9605]
gi|78198147|gb|ABB35912.1| conserved hypothetical protein [Synechococcus sp. CC9605]
Length = 171
Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 40/80 (50%), Positives = 60/80 (75%), Gaps = 1/80 (1%)
Query: 101 EKRRLVLKFIWMQNDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDSKPWISQT 160
++ R +LK +W+ +++ +A+DQ++ G G PL+ Y+FWPR+DAWE LK L+ K WI+
Sbjct: 72 DEGRFLLKILWLPDNVALAVDQIV-GGGPSPLTSYFFWPREDAWESLKTELEGKSWITDN 130
Query: 161 ERIHLLNQATDVINFWQTSG 180
ERI +LNQAT+VIN+WQ G
Sbjct: 131 ERIEVLNQATEVINYWQEEG 150
>gi|186684530|ref|YP_001867726.1| hypothetical protein Npun_F4413 [Nostoc punctiforme PCC 73102]
gi|226705384|sp|B2IUK8.1|RRP3_NOSP7 RecName: Full=Probable 30S ribosomal protein PSRP-3; AltName:
Full=Ycf65-like protein
gi|186466982|gb|ACC82783.1| ribosomal protein PSRP-3/Ycf65 [Nostoc punctiforme PCC 73102]
Length = 99
Score = 99.8 bits (247), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 41/79 (51%), Positives = 60/79 (75%), Gaps = 1/79 (1%)
Query: 104 RLVLKFIWMQNDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDSKPWISQTERI 163
+ +LK +W+ ++ +A+DQ++ G GT PL+ Y+FWPR DAWEELK L+SK WI+ +R+
Sbjct: 3 KFILKILWLDENVALAVDQIV-GKGTSPLTKYFFWPRNDAWEELKKELESKHWITDLDRV 61
Query: 164 HLLNQATDVINFWQTSGGN 182
LLN+AT+VIN+WQ G N
Sbjct: 62 ELLNKATEVINYWQEEGRN 80
>gi|443477346|ref|ZP_21067200.1| 30S ribosomal protein 3 [Pseudanabaena biceps PCC 7429]
gi|443017542|gb|ELS31959.1| 30S ribosomal protein 3 [Pseudanabaena biceps PCC 7429]
Length = 99
Score = 99.8 bits (247), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 40/79 (50%), Positives = 62/79 (78%), Gaps = 1/79 (1%)
Query: 104 RLVLKFIWMQNDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDSKPWISQTERI 163
+ +LK +W++N++ +A+DQV+ G G PL+ Y+FWPR DAW++LK ++SKPWI+ +RI
Sbjct: 3 QFILKILWLENNVALAVDQVV-GKGFSPLTKYFFWPRDDAWDQLKSEMESKPWIADQDRI 61
Query: 164 HLLNQATDVINFWQTSGGN 182
+LN+AT+VIN+WQ G N
Sbjct: 62 EILNKATEVINYWQQEGKN 80
>gi|260435464|ref|ZP_05789434.1| ribosomal protein [Synechococcus sp. WH 8109]
gi|260413338|gb|EEX06634.1| ribosomal protein [Synechococcus sp. WH 8109]
Length = 171
Score = 99.4 bits (246), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 39/80 (48%), Positives = 60/80 (75%), Gaps = 1/80 (1%)
Query: 101 EKRRLVLKFIWMQNDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDSKPWISQT 160
++ R +LK +W+ +++ +A+DQ++ G G PL+ Y+FWPR+DAWE LK L+ K WI+
Sbjct: 72 DEGRFLLKILWLPDNVALAVDQIV-GGGPSPLTSYFFWPREDAWESLKTELEGKSWITDN 130
Query: 161 ERIHLLNQATDVINFWQTSG 180
ER+ +LNQAT+VIN+WQ G
Sbjct: 131 ERVEVLNQATEVINYWQEEG 150
>gi|428219529|ref|YP_007103994.1| 30S ribosomal protein 3 [Pseudanabaena sp. PCC 7367]
gi|427991311|gb|AFY71566.1| 30S ribosomal protein 3 [Pseudanabaena sp. PCC 7367]
Length = 95
Score = 99.4 bits (246), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 41/75 (54%), Positives = 60/75 (80%), Gaps = 1/75 (1%)
Query: 106 VLKFIWMQNDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDSKPWISQTERIHL 165
+LK +W+++++ IA+DQV+ G G PL+ Y+FWPR DAW++LK ++SKPWIS ERI +
Sbjct: 1 MLKILWLEDNVAIAVDQVV-GTGFSPLTKYFFWPRDDAWDQLKTEMESKPWISDQERIEM 59
Query: 166 LNQATDVINFWQTSG 180
LN+AT+VIN+WQ G
Sbjct: 60 LNKATEVINYWQEEG 74
>gi|428222621|ref|YP_007106791.1| Plastid and cyanobacterial ribosomal protein (PSRP-3 / Ycf65)
[Synechococcus sp. PCC 7502]
gi|427995961|gb|AFY74656.1| Plastid and cyanobacterial ribosomal protein (PSRP-3 / Ycf65)
[Synechococcus sp. PCC 7502]
Length = 99
Score = 99.4 bits (246), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 59/77 (76%), Gaps = 1/77 (1%)
Query: 104 RLVLKFIWMQNDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDSKPWISQTERI 163
+ +LK +W++ D+ +A+DQV+ G G PL+ YYFWPR +AWE+L+ ++SK WI+ ERI
Sbjct: 3 QFILKVLWLEKDVALAVDQVV-GKGNSPLTKYYFWPRDNAWEQLQTEMESKSWITDQERI 61
Query: 164 HLLNQATDVINFWQTSG 180
LLN+AT+VIN+WQ G
Sbjct: 62 ELLNKATEVINYWQEEG 78
>gi|116071287|ref|ZP_01468556.1| hypothetical protein BL107_16615 [Synechococcus sp. BL107]
gi|116066692|gb|EAU72449.1| hypothetical protein BL107_16615 [Synechococcus sp. BL107]
Length = 183
Score = 99.0 bits (245), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 39/80 (48%), Positives = 60/80 (75%), Gaps = 1/80 (1%)
Query: 101 EKRRLVLKFIWMQNDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDSKPWISQT 160
++ R +LK +W+ +++ +A+DQ++ G G PL+ Y+FWPR+DAWE LK L+ K WI+
Sbjct: 84 DEGRFLLKILWLPDNVALAVDQIV-GGGPSPLTSYFFWPREDAWETLKTELEGKSWITDN 142
Query: 161 ERIHLLNQATDVINFWQTSG 180
ER+ +LNQAT+VIN+WQ G
Sbjct: 143 ERVEVLNQATEVINYWQEEG 162
>gi|428781584|ref|YP_007173370.1| Plastid and cyanobacterial ribosomal protein (PSRP-3 / Ycf65)
[Dactylococcopsis salina PCC 8305]
gi|428695863|gb|AFZ52013.1| Plastid and cyanobacterial ribosomal protein (PSRP-3 / Ycf65)
[Dactylococcopsis salina PCC 8305]
Length = 110
Score = 99.0 bits (245), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 42/83 (50%), Positives = 63/83 (75%), Gaps = 1/83 (1%)
Query: 97 VKPNEKRRLVLKFIWMQNDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDSKPW 156
V+ + + R VLK +W+ +++ +A+D V+ G G PL+ Y+FWPR DAWE+LK L+SK W
Sbjct: 7 VEVSTENRFVLKVLWLDDNVAVAVDHVV-GKGNSPLTAYFFWPRNDAWEQLKEELESKTW 65
Query: 157 ISQTERIHLLNQATDVINFWQTS 179
I++ E+I LLNQAT+VIN+WQ +
Sbjct: 66 ITEEEKIDLLNQATEVINYWQEN 88
>gi|443325739|ref|ZP_21054420.1| Plastid and cyanobacterial ribosomal protein (PSRP-3 / Ycf65)
[Xenococcus sp. PCC 7305]
gi|442794663|gb|ELS04069.1| Plastid and cyanobacterial ribosomal protein (PSRP-3 / Ycf65)
[Xenococcus sp. PCC 7305]
Length = 102
Score = 99.0 bits (245), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 42/77 (54%), Positives = 59/77 (76%), Gaps = 1/77 (1%)
Query: 104 RLVLKFIWMQNDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDSKPWISQTERI 163
+ LK +W+ D+ IA+DQV+ G GT PL+ Y+FWPR DAW++LK L++K WIS+ +RI
Sbjct: 6 KFTLKILWLDKDVAIAVDQVV-GKGTSPLTAYFFWPRNDAWQQLKEELEAKHWISEEDRI 64
Query: 164 HLLNQATDVINFWQTSG 180
+LN+AT+VINFWQ G
Sbjct: 65 GVLNKATEVINFWQEYG 81
>gi|434399416|ref|YP_007133420.1| 30S ribosomal protein 3 [Stanieria cyanosphaera PCC 7437]
gi|428270513|gb|AFZ36454.1| 30S ribosomal protein 3 [Stanieria cyanosphaera PCC 7437]
Length = 100
Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 42/79 (53%), Positives = 59/79 (74%), Gaps = 1/79 (1%)
Query: 102 KRRLVLKFIWMQNDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDSKPWISQTE 161
+ R LK +W+ D+ IA+DQV+ G GT PL+ Y+FWPR DAW++L L++K WI++ E
Sbjct: 2 ESRFTLKVLWLDKDVAIAVDQVV-GKGTSPLTAYFFWPRNDAWQQLHDELEAKHWIAENE 60
Query: 162 RIHLLNQATDVINFWQTSG 180
RI +LN+AT+VINFWQ G
Sbjct: 61 RIEVLNKATEVINFWQEHG 79
>gi|124112133|ref|YP_001019068.1| hypothetical chloroplast RF65 [Chlorokybus atmophyticus]
gi|124012240|gb|ABM87974.1| hypothetical chloroplast RF65 [Chlorokybus atmophyticus]
Length = 112
Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 42/75 (56%), Positives = 59/75 (78%), Gaps = 1/75 (1%)
Query: 103 RRLVLKFIWMQNDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDSKPWISQTER 162
++ +LKF+W++ ++G+A+DQV G GT P++ Y+FWPRKDAWEEL+ L +KPWIS +
Sbjct: 7 QKFILKFLWLEKNLGVAVDQVT-GKGTSPVTEYFFWPRKDAWEELRDALATKPWISYDDS 65
Query: 163 IHLLNQATDVINFWQ 177
I LLN+ TDVIN WQ
Sbjct: 66 ILLLNETTDVINLWQ 80
>gi|172036668|ref|YP_001803169.1| hypothetical protein cce_1753 [Cyanothece sp. ATCC 51142]
gi|254809568|sp|B1WYT6.1|RRP3_CYAA5 RecName: Full=Probable 30S ribosomal protein PSRP-3; AltName:
Full=Ycf65-like protein
gi|171698122|gb|ACB51103.1| putative plastid and cyanobacterial ribosomal protein PSRP-3/Ycf65
[Cyanothece sp. ATCC 51142]
Length = 112
Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 42/74 (56%), Positives = 59/74 (79%), Gaps = 1/74 (1%)
Query: 104 RLVLKFIWMQNDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDSKPWISQTERI 163
R +LK +W+ ++ IA+DQV+ G GT PL+ Y+FWPR DAW+ELK L++K WI +TERI
Sbjct: 13 RFILKVLWLDANVAIAVDQVV-GKGTSPLTAYFFWPRNDAWQELKDELEAKHWILETERI 71
Query: 164 HLLNQATDVINFWQ 177
+LN+AT+VIN+WQ
Sbjct: 72 EILNKATEVINYWQ 85
>gi|33241042|ref|NP_875984.1| hypothetical protein Pro1593 [Prochlorococcus marinus subsp.
marinus str. CCMP1375]
gi|46577392|sp|Q7VA74.1|RRP3_PROMA RecName: Full=Probable 30S ribosomal protein PSRP-3; AltName:
Full=Ycf65-like protein
gi|33238571|gb|AAQ00637.1| Uncharacterized protein [Prochlorococcus marinus subsp. marinus
str. CCMP1375]
Length = 126
Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 39/80 (48%), Positives = 61/80 (76%), Gaps = 1/80 (1%)
Query: 101 EKRRLVLKFIWMQNDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDSKPWISQT 160
++ R +LK +W+ +++ +A+DQ++ G GT PL+ Y+FWPR+DAWE LK L+ K WI+
Sbjct: 27 DEGRFLLKILWLPDNVALAVDQIV-GGGTSPLTAYFFWPREDAWETLKTELEDKAWITDN 85
Query: 161 ERIHLLNQATDVINFWQTSG 180
ER+ +LN+AT+VIN+WQ G
Sbjct: 86 ERVEVLNKATEVINYWQEEG 105
>gi|354554482|ref|ZP_08973786.1| 30S ribosomal protein 3 [Cyanothece sp. ATCC 51472]
gi|353553291|gb|EHC22683.1| 30S ribosomal protein 3 [Cyanothece sp. ATCC 51472]
Length = 103
Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 42/74 (56%), Positives = 59/74 (79%), Gaps = 1/74 (1%)
Query: 104 RLVLKFIWMQNDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDSKPWISQTERI 163
R +LK +W+ ++ IA+DQV+ G GT PL+ Y+FWPR DAW+ELK L++K WI +TERI
Sbjct: 4 RFILKVLWLDANVAIAVDQVV-GKGTSPLTAYFFWPRNDAWQELKDELEAKHWILETERI 62
Query: 164 HLLNQATDVINFWQ 177
+LN+AT+VIN+WQ
Sbjct: 63 EILNKATEVINYWQ 76
>gi|427735970|ref|YP_007055514.1| Plastid and cyanobacterial ribosomal protein (PSRP-3 / Ycf65)
[Rivularia sp. PCC 7116]
gi|427371011|gb|AFY54967.1| Plastid and cyanobacterial ribosomal protein (PSRP-3 / Ycf65)
[Rivularia sp. PCC 7116]
Length = 109
Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 59/77 (76%), Gaps = 1/77 (1%)
Query: 104 RLVLKFIWMQNDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDSKPWISQTERI 163
+ +LK +W+ +++ +A+DQ++ G G PL+ Y+FWPR DAWEELK L+SK WI + ER+
Sbjct: 13 KFILKILWLDDNVALAVDQIV-GKGFSPLTKYFFWPRTDAWEELKNELESKHWIGEVERV 71
Query: 164 HLLNQATDVINFWQTSG 180
LLN+AT+VIN+WQ G
Sbjct: 72 ELLNKATEVINYWQEEG 88
>gi|86609171|ref|YP_477933.1| hypothetical protein CYB_1711 [Synechococcus sp. JA-2-3B'a(2-13)]
gi|123502100|sp|Q2JKV8.1|RRP3_SYNJB RecName: Full=Probable 30S ribosomal protein PSRP-3; AltName:
Full=Ycf65-like protein
gi|86557713|gb|ABD02670.1| Ycf65-like protein [Synechococcus sp. JA-2-3B'a(2-13)]
Length = 99
Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 42/79 (53%), Positives = 61/79 (77%), Gaps = 1/79 (1%)
Query: 104 RLVLKFIWMQNDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDSKPWISQTERI 163
+ LK +W++ND+ IA+DQV+ + + PL+ Y+FWPR DAWE+LK L+SK WIS+ +RI
Sbjct: 3 KFALKALWLENDLAIAVDQVVAKNRS-PLTHYFFWPRDDAWEQLKAELESKTWISEVDRI 61
Query: 164 HLLNQATDVINFWQTSGGN 182
LLN+AT++IN+WQ G N
Sbjct: 62 ELLNRATELINYWQNGGRN 80
>gi|428299669|ref|YP_007137975.1| 30S ribosomal protein 3 [Calothrix sp. PCC 6303]
gi|428236213|gb|AFZ02003.1| 30S ribosomal protein 3 [Calothrix sp. PCC 6303]
Length = 114
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 40/79 (50%), Positives = 59/79 (74%), Gaps = 1/79 (1%)
Query: 104 RLVLKFIWMQNDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDSKPWISQTERI 163
+ +LK +W+ ++ +A+DQV+ G GT PL+ Y+FWPR DAWEE+K L+SK WI+ +R+
Sbjct: 18 KFILKILWLDENVALAVDQVV-GKGTSPLTKYFFWPRNDAWEEMKKELESKHWITDVDRV 76
Query: 164 HLLNQATDVINFWQTSGGN 182
LLN+ T+VIN+WQ G N
Sbjct: 77 ELLNKGTEVINYWQEEGRN 95
>gi|414076827|ref|YP_006996145.1| 30S ribosomal protein PSRP-3/Ycf65 [Anabaena sp. 90]
gi|413970243|gb|AFW94332.1| 30S ribosomal protein PSRP-3/Ycf65 [Anabaena sp. 90]
Length = 99
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 59/77 (76%), Gaps = 1/77 (1%)
Query: 104 RLVLKFIWMQNDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDSKPWISQTERI 163
+ +LK +W+ ++ +A+DQV+ G G+ PL+ Y+FWPR DAWEELK L+SK WI+ +R+
Sbjct: 3 KFILKILWLDENVALAVDQVV-GKGSSPLTKYFFWPRNDAWEELKKELESKHWITDVDRV 61
Query: 164 HLLNQATDVINFWQTSG 180
LLN+AT+VIN+WQ G
Sbjct: 62 ELLNKATEVINYWQEEG 78
>gi|428304677|ref|YP_007141502.1| 30S ribosomal protein 3 [Crinalium epipsammum PCC 9333]
gi|428246212|gb|AFZ11992.1| 30S ribosomal protein 3 [Crinalium epipsammum PCC 9333]
Length = 99
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 59/77 (76%), Gaps = 1/77 (1%)
Query: 104 RLVLKFIWMQNDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDSKPWISQTERI 163
+ +LK +W+ ++ IA+DQV+ G GT PL+ Y+FWPR DAWE+LK L+SK WI+ +R+
Sbjct: 3 KFILKVLWLDENVAIAVDQVV-GKGTSPLTSYFFWPRNDAWEQLKTELESKHWIADVDRV 61
Query: 164 HLLNQATDVINFWQTSG 180
+LN+AT+VIN+WQ G
Sbjct: 62 AVLNKATEVINYWQEEG 78
>gi|119512551|ref|ZP_01631629.1| hypothetical protein N9414_10912 [Nodularia spumigena CCY9414]
gi|119462812|gb|EAW43771.1| hypothetical protein N9414_10912 [Nodularia spumigena CCY9414]
Length = 99
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 41/77 (53%), Positives = 59/77 (76%), Gaps = 1/77 (1%)
Query: 104 RLVLKFIWMQNDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDSKPWISQTERI 163
+ +LK +W+ ++ +A+DQV+ G GT PL+ Y+FWPR DAWEELK L+SK WI+ +R+
Sbjct: 3 QFILKILWLDENVALAVDQVV-GKGTSPLTKYFFWPRNDAWEELKKELESKHWITDLDRV 61
Query: 164 HLLNQATDVINFWQTSG 180
LLN+AT+VIN+WQ G
Sbjct: 62 ELLNKATEVINYWQEEG 78
>gi|443322603|ref|ZP_21051622.1| Plastid and cyanobacterial ribosomal protein (PSRP-3 / Ycf65)
[Gloeocapsa sp. PCC 73106]
gi|442787652|gb|ELR97366.1| Plastid and cyanobacterial ribosomal protein (PSRP-3 / Ycf65)
[Gloeocapsa sp. PCC 73106]
Length = 99
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 58/77 (75%), Gaps = 1/77 (1%)
Query: 104 RLVLKFIWMQNDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDSKPWISQTERI 163
R +LK +W+ D+ +A+DQ++ G G PL+ Y+FWPR DAW++LK LDSK WI++ E++
Sbjct: 3 RFILKVLWLDKDVALAIDQIV-GKGFSPLTAYFFWPRNDAWQQLKDELDSKSWIAENEKV 61
Query: 164 HLLNQATDVINFWQTSG 180
+LN+ T+VINFWQ G
Sbjct: 62 EILNKVTEVINFWQEYG 78
>gi|86605051|ref|YP_473814.1| hypothetical protein CYA_0331 [Synechococcus sp. JA-3-3Ab]
gi|123507800|sp|Q2JXD5.1|RRP3_SYNJA RecName: Full=Probable 30S ribosomal protein PSRP-3; AltName:
Full=Ycf65-like protein
gi|86553593|gb|ABC98551.1| Ycf65-like protein [Synechococcus sp. JA-3-3Ab]
Length = 99
Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 42/77 (54%), Positives = 60/77 (77%), Gaps = 1/77 (1%)
Query: 104 RLVLKFIWMQNDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDSKPWISQTERI 163
+ LK +W++ND+ IA+DQV+ + + PL+ Y+FWPR DAWE+LK L+SK WIS+ +RI
Sbjct: 3 KFALKALWLENDLAIAVDQVVAKNRS-PLTRYFFWPRDDAWEQLKAELESKTWISEEDRI 61
Query: 164 HLLNQATDVINFWQTSG 180
LLNQAT++IN+WQ G
Sbjct: 62 TLLNQATELINYWQNGG 78
>gi|51209883|ref|YP_063547.1| putative ribosomal protein 3 [Gracilaria tenuistipitata var. liui]
gi|68053126|sp|Q6B913.1|RRP3_GRATL RecName: Full=Probable 30S ribosomal protein 3, chloroplastic;
Short=PSRP-3
gi|50657637|gb|AAT79622.1| conserved hypothetical plastid protein [Gracilaria tenuistipitata
var. liui]
Length = 99
Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 40/79 (50%), Positives = 58/79 (73%), Gaps = 1/79 (1%)
Query: 104 RLVLKFIWMQNDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDSKPWISQTERI 163
+ K +W++N+I IA+D I G+ PL+ Y+FWPR DAWEELK+ L+SKPWI++ E++
Sbjct: 3 KFTFKILWLENNIAIAIDYNI-GNNKSPLTSYFFWPRNDAWEELKIELESKPWINKNEKV 61
Query: 164 HLLNQATDVINFWQTSGGN 182
LLN+ T++INFWQ N
Sbjct: 62 DLLNKTTEIINFWQEKEKN 80
>gi|11466424|ref|NP_038428.1| hypothetical chloroplast RF65 [Mesostigma viride]
gi|12230814|sp|Q9MUN2.1|RRP3_MESVI RecName: Full=Probable 30S ribosomal protein 3, chloroplastic;
Short=PSRP-3
gi|7259567|gb|AAF43868.1|AF166114_80 hypothetical chloroplast RF65 (chloroplast) [Mesostigma viride]
Length = 123
Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 47/93 (50%), Positives = 62/93 (66%), Gaps = 9/93 (9%)
Query: 93 LGVVVKPNE---KRR-----LVLKFIWMQNDIGIALDQVIPGHGTIPLSPYYFWPRKDAW 144
+ + +K N KRR VLKF+W++ ++ + +DQV G P++ Y+FWPRKDAW
Sbjct: 1 MNIFIKQNSSTVKRRYPLQKFVLKFLWLEKNLAVTVDQVT-NRGNSPITEYFFWPRKDAW 59
Query: 145 EELKVLLDSKPWISQTERIHLLNQATDVINFWQ 177
EELK L +KPWIS E I LLNQ TDVIN+WQ
Sbjct: 60 EELKDALANKPWISYDESIALLNQTTDVINYWQ 92
>gi|254432005|ref|ZP_05045708.1| ribosomal protein psrp-3/Ycf65 [Cyanobium sp. PCC 7001]
gi|197626458|gb|EDY39017.1| ribosomal protein psrp-3/Ycf65 [Cyanobium sp. PCC 7001]
Length = 163
Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 38/80 (47%), Positives = 59/80 (73%), Gaps = 1/80 (1%)
Query: 101 EKRRLVLKFIWMQNDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDSKPWISQT 160
++ R +LK +W+ ++ +A+DQ++ G G PL+ Y+FWPR+DAWE LK L+ K WI+
Sbjct: 64 DEGRFLLKILWLPENVALAVDQIV-GGGPSPLTAYFFWPREDAWETLKTELEGKSWITDN 122
Query: 161 ERIHLLNQATDVINFWQTSG 180
ER+ +LN+AT+VIN+WQ G
Sbjct: 123 ERVEILNKATEVINYWQEEG 142
>gi|87301239|ref|ZP_01084080.1| hypothetical protein WH5701_15176 [Synechococcus sp. WH 5701]
gi|87284207|gb|EAQ76160.1| hypothetical protein WH5701_15176 [Synechococcus sp. WH 5701]
Length = 164
Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 38/80 (47%), Positives = 61/80 (76%), Gaps = 1/80 (1%)
Query: 101 EKRRLVLKFIWMQNDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDSKPWISQT 160
++ R +LK +W+ +++ +A+DQ++ G G PL+ Y+FWPR+DAWE LK L++K WI+
Sbjct: 65 DEGRFLLKILWLPDNVALAVDQIV-GGGPSPLTAYFFWPREDAWETLKGELEAKSWITDN 123
Query: 161 ERIHLLNQATDVINFWQTSG 180
ER+ +LN+AT+VIN+WQ G
Sbjct: 124 ERVEILNKATEVINYWQEEG 143
>gi|363399168|gb|AEW12984.1| putative ribosomal protein 3 [Strombomonas acuminata]
Length = 100
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 43/74 (58%), Positives = 56/74 (75%), Gaps = 1/74 (1%)
Query: 104 RLVLKFIWMQNDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDSKPWISQTERI 163
R VLKF+W+ I +ALDQ I G IPL+ +YFWP+KDAWEE+K+ L+ K WISQ + I
Sbjct: 3 RFVLKFLWLDKAIAVALDQKI-GERNIPLTEFYFWPQKDAWEEMKLFLEKKSWISQADVI 61
Query: 164 HLLNQATDVINFWQ 177
+LNQ T+VIN+WQ
Sbjct: 62 AILNQVTEVINYWQ 75
>gi|11467621|ref|NP_050673.1| putative ribosomal protein 3 [Guillardia theta]
gi|6136628|sp|O78422.1|RRP3_GUITH RecName: Full=Probable 30S ribosomal protein 3, chloroplastic;
Short=PSRP-3
gi|3602946|gb|AAC35607.1| unknown (chloroplast) [Guillardia theta]
Length = 99
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 40/74 (54%), Positives = 58/74 (78%), Gaps = 1/74 (1%)
Query: 104 RLVLKFIWMQNDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDSKPWISQTERI 163
+ LK +W+ N++ +A+DQ+I G+GT PL+ Y+FWPR DAWE++K L+SKPWI + ERI
Sbjct: 3 KFTLKVLWLDNNVAVAVDQII-GNGTSPLTCYFFWPRNDAWEQVKAELESKPWIEEKERI 61
Query: 164 HLLNQATDVINFWQ 177
LLN+ T++IN WQ
Sbjct: 62 ELLNKTTELINCWQ 75
>gi|87123624|ref|ZP_01079474.1| hypothetical protein RS9917_08451 [Synechococcus sp. RS9917]
gi|86168193|gb|EAQ69450.1| hypothetical protein RS9917_08451 [Synechococcus sp. RS9917]
Length = 172
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 38/80 (47%), Positives = 60/80 (75%), Gaps = 1/80 (1%)
Query: 101 EKRRLVLKFIWMQNDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDSKPWISQT 160
++ R +LK +W+ +++ +A+DQ++ G G PL+ Y+FWPR+DAWE LK L+ K WI+
Sbjct: 73 DEGRFLLKILWLPDNVALAVDQIV-GGGPSPLTSYFFWPREDAWETLKTELEGKSWITDN 131
Query: 161 ERIHLLNQATDVINFWQTSG 180
ER+ +LN+AT+VIN+WQ G
Sbjct: 132 ERVEVLNKATEVINYWQEEG 151
>gi|158336062|ref|YP_001517236.1| hypothetical protein AM1_2922 [Acaryochloris marina MBIC11017]
gi|359462658|ref|ZP_09251221.1| hypothetical protein ACCM5_28261 [Acaryochloris sp. CCMEE 5410]
gi|189040357|sp|B0CBD5.1|RRP3_ACAM1 RecName: Full=Probable 30S ribosomal protein PSRP-3; AltName:
Full=Ycf65-like protein
gi|158306303|gb|ABW27920.1| 30S ribosomal protein Ycf65 [Acaryochloris marina MBIC11017]
Length = 99
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 58/77 (75%), Gaps = 1/77 (1%)
Query: 104 RLVLKFIWMQNDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDSKPWISQTERI 163
+ +LK +W+ ++ +A+DQV+ G+G+ PL+ Y+FWPR DAWE LK L+ K WI + ERI
Sbjct: 3 KFILKVLWLDENVALAVDQVV-GNGSSPLTSYFFWPRNDAWENLKTELEKKTWIDEVERI 61
Query: 164 HLLNQATDVINFWQTSG 180
+LN+AT+VIN+WQ G
Sbjct: 62 SILNKATEVINYWQEEG 78
>gi|443312788|ref|ZP_21042403.1| Plastid and cyanobacterial ribosomal protein (PSRP-3 / Ycf65)
[Synechocystis sp. PCC 7509]
gi|442777244|gb|ELR87522.1| Plastid and cyanobacterial ribosomal protein (PSRP-3 / Ycf65)
[Synechocystis sp. PCC 7509]
Length = 99
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 38/77 (49%), Positives = 60/77 (77%), Gaps = 1/77 (1%)
Query: 104 RLVLKFIWMQNDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDSKPWISQTERI 163
+ +LK +W+ ++ +A+DQ++ G GT PL+ Y+FWPR DAWEELK +++K WI++ +R+
Sbjct: 3 KFILKVLWLDENVALAVDQIV-GKGTSPLTRYFFWPRNDAWEELKSEMEAKHWIAEQDRV 61
Query: 164 HLLNQATDVINFWQTSG 180
+LNQAT+VIN+WQ G
Sbjct: 62 SVLNQATEVINYWQEEG 78
>gi|307107479|gb|EFN55722.1| hypothetical protein CHLNCDRAFT_31142 [Chlorella variabilis]
Length = 188
Score = 96.7 bits (239), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 39/80 (48%), Positives = 54/80 (67%)
Query: 99 PNEKRRLVLKFIWMQNDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDSKPWIS 158
P + L F+W+ +I +A+DQV P++ Y+FWPRKDAWEELK LD++ WI
Sbjct: 88 PTDAAEFSLNFLWLDKNIAVAVDQVFHQGQRSPVTEYFFWPRKDAWEELKASLDARTWIG 147
Query: 159 QTERIHLLNQATDVINFWQT 178
+ E++ LLNQ T+VINFWQ
Sbjct: 148 EREKVLLLNQCTEVINFWQA 167
>gi|284929223|ref|YP_003421745.1| 30S ribosomal protein PSRP-3 [cyanobacterium UCYN-A]
gi|284809667|gb|ADB95364.1| Plastid and cyanobacterial ribosomal protein (PSRP-3 / Ycf65)
[cyanobacterium UCYN-A]
Length = 103
Score = 96.7 bits (239), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 40/74 (54%), Positives = 59/74 (79%), Gaps = 1/74 (1%)
Query: 104 RLVLKFIWMQNDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDSKPWISQTERI 163
R +LK +W+ ++ IA+DQ++ G GT PL+ Y+FWPR +AW+ELK L++K WI +TERI
Sbjct: 4 RFILKVLWLDANVAIAVDQIV-GKGTSPLTAYFFWPRNNAWQELKNELEAKHWILETERI 62
Query: 164 HLLNQATDVINFWQ 177
+LN+AT+VIN+WQ
Sbjct: 63 EVLNKATEVINYWQ 76
>gi|16331676|ref|NP_442404.1| hypothetical protein slr0923 [Synechocystis sp. PCC 6803]
gi|383323418|ref|YP_005384272.1| hypothetical protein SYNGTI_2510 [Synechocystis sp. PCC 6803
substr. GT-I]
gi|383326587|ref|YP_005387441.1| hypothetical protein SYNPCCP_2509 [Synechocystis sp. PCC 6803
substr. PCC-P]
gi|383492471|ref|YP_005410148.1| hypothetical protein SYNPCCN_2509 [Synechocystis sp. PCC 6803
substr. PCC-N]
gi|384437739|ref|YP_005652464.1| hypothetical protein SYNGTS_2511 [Synechocystis sp. PCC 6803]
gi|451815828|ref|YP_007452280.1| hypothetical protein MYO_125360 [Synechocystis sp. PCC 6803]
gi|6136561|sp|Q55385.1|RRP3_SYNY3 RecName: Full=Probable 30S ribosomal protein PSRP-3; AltName:
Full=Ycf65-like protein
gi|1001233|dbj|BAA10474.1| slr0923 [Synechocystis sp. PCC 6803]
gi|339274772|dbj|BAK51259.1| hypothetical protein SYNGTS_2511 [Synechocystis sp. PCC 6803]
gi|359272738|dbj|BAL30257.1| hypothetical protein SYNGTI_2510 [Synechocystis sp. PCC 6803
substr. GT-I]
gi|359275908|dbj|BAL33426.1| hypothetical protein SYNPCCN_2509 [Synechocystis sp. PCC 6803
substr. PCC-N]
gi|359279078|dbj|BAL36595.1| hypothetical protein SYNPCCP_2509 [Synechocystis sp. PCC 6803
substr. PCC-P]
gi|407960690|dbj|BAM53930.1| hypothetical protein BEST7613_4999 [Bacillus subtilis BEST7613]
gi|451781797|gb|AGF52766.1| hypothetical protein MYO_125360 [Synechocystis sp. PCC 6803]
Length = 112
Score = 96.7 bits (239), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 39/73 (53%), Positives = 59/73 (80%), Gaps = 1/73 (1%)
Query: 105 LVLKFIWMQNDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDSKPWISQTERIH 164
+LK +W+ ++ IA+DQ++ G GT PL+ Y+FWPR DAW++LK L++K WI++ +RI+
Sbjct: 14 FILKVLWLDQNVAIAVDQIV-GKGTSPLTSYFFWPRADAWQQLKDELEAKHWIAEADRIN 72
Query: 165 LLNQATDVINFWQ 177
+LNQAT+VINFWQ
Sbjct: 73 VLNQATEVINFWQ 85
>gi|434386270|ref|YP_007096881.1| Plastid and cyanobacterial ribosomal protein (PSRP-3 / Ycf65)
[Chamaesiphon minutus PCC 6605]
gi|428017260|gb|AFY93354.1| Plastid and cyanobacterial ribosomal protein (PSRP-3 / Ycf65)
[Chamaesiphon minutus PCC 6605]
Length = 109
Score = 96.7 bits (239), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 39/82 (47%), Positives = 60/82 (73%), Gaps = 1/82 (1%)
Query: 99 PNEKRRLVLKFIWMQNDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDSKPWIS 158
P + +LK +W+ ++ +A+DQV+ G G PL+ Y+FWPR DAWE+LK L++K WI+
Sbjct: 8 PVTTSKFILKVLWLDENVALAVDQVV-GKGLSPLTAYFFWPRNDAWEQLKAELEAKHWIA 66
Query: 159 QTERIHLLNQATDVINFWQTSG 180
+ +R+ +LNQAT+VIN+WQ G
Sbjct: 67 EVDRVGILNQATEVINYWQEEG 88
>gi|88807396|ref|ZP_01122908.1| hypothetical protein WH7805_12633 [Synechococcus sp. WH 7805]
gi|88788610|gb|EAR19765.1| hypothetical protein WH7805_12633 [Synechococcus sp. WH 7805]
Length = 167
Score = 96.7 bits (239), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 38/80 (47%), Positives = 61/80 (76%), Gaps = 1/80 (1%)
Query: 101 EKRRLVLKFIWMQNDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDSKPWISQT 160
++ R +LK +W+ +++ +A+DQ++ G G PL+ Y+FWPR+DAWE LK L++K WI+
Sbjct: 68 DEGRFLLKILWLPDNVALAVDQIV-GGGPSPLTSYFFWPREDAWETLKGELEAKSWITDN 126
Query: 161 ERIHLLNQATDVINFWQTSG 180
ER+ +LN+AT+VIN+WQ G
Sbjct: 127 ERVEVLNKATEVINYWQEEG 146
>gi|116073669|ref|ZP_01470931.1| hypothetical protein RS9916_34502 [Synechococcus sp. RS9916]
gi|116068974|gb|EAU74726.1| hypothetical protein RS9916_34502 [Synechococcus sp. RS9916]
Length = 172
Score = 96.7 bits (239), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 38/80 (47%), Positives = 60/80 (75%), Gaps = 1/80 (1%)
Query: 101 EKRRLVLKFIWMQNDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDSKPWISQT 160
++ R +LK +W+ +++ +A+DQ++ G G PL+ Y+FWPR+DAWE LK L+ K WI+
Sbjct: 73 DEGRFLLKILWLPDNVALAVDQIV-GGGPSPLTAYFFWPREDAWETLKGELEGKSWITDN 131
Query: 161 ERIHLLNQATDVINFWQTSG 180
ER+ +LN+AT+VIN+WQ G
Sbjct: 132 ERVEVLNKATEVINYWQEEG 151
>gi|352095877|ref|ZP_08956824.1| 30S ribosomal protein 3 [Synechococcus sp. WH 8016]
gi|351677233|gb|EHA60382.1| 30S ribosomal protein 3 [Synechococcus sp. WH 8016]
Length = 186
Score = 96.7 bits (239), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 38/80 (47%), Positives = 60/80 (75%), Gaps = 1/80 (1%)
Query: 101 EKRRLVLKFIWMQNDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDSKPWISQT 160
++ R +LK +W+ +++ +A+DQ++ G G PL+ Y+FWPR+DAWE LK L+ K WI+
Sbjct: 87 DEGRFLLKILWLPDNVALAVDQIV-GGGPSPLTAYFFWPREDAWETLKSELEGKSWITDN 145
Query: 161 ERIHLLNQATDVINFWQTSG 180
ER+ +LN+AT+VIN+WQ G
Sbjct: 146 ERVEVLNKATEVINYWQEEG 165
>gi|124026545|ref|YP_001015660.1| hypothetical protein NATL1_18401 [Prochlorococcus marinus str.
NATL1A]
gi|123961613|gb|ABM76396.1| conserved hypothetical protein [Prochlorococcus marinus str.
NATL1A]
Length = 166
Score = 96.3 bits (238), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 38/80 (47%), Positives = 60/80 (75%), Gaps = 1/80 (1%)
Query: 101 EKRRLVLKFIWMQNDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDSKPWISQT 160
++ R +LK +W+ +++ +A+DQ++ G G PL+ Y+FWPR+DAWE LK L+ K WI+
Sbjct: 67 DEGRFLLKILWLPDNVALAVDQIV-GGGPSPLTAYFFWPREDAWETLKSQLEEKSWITDN 125
Query: 161 ERIHLLNQATDVINFWQTSG 180
ER+ +LN+AT+VIN+WQ G
Sbjct: 126 ERVEVLNKATEVINYWQEEG 145
>gi|72382810|ref|YP_292165.1| hypothetical protein PMN2A_0972 [Prochlorococcus marinus str.
NATL2A]
gi|72002660|gb|AAZ58462.1| conserved hypothetical protein [Prochlorococcus marinus str.
NATL2A]
Length = 166
Score = 96.3 bits (238), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 38/80 (47%), Positives = 60/80 (75%), Gaps = 1/80 (1%)
Query: 101 EKRRLVLKFIWMQNDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDSKPWISQT 160
++ R +LK +W+ +++ +A+DQ++ G G PL+ Y+FWPR+DAWE LK L+ K WI+
Sbjct: 67 DEGRFLLKILWLPDNVALAVDQIV-GGGPSPLTAYFFWPREDAWETLKSQLEEKSWITDN 125
Query: 161 ERIHLLNQATDVINFWQTSG 180
ER+ +LN+AT+VIN+WQ G
Sbjct: 126 ERVEVLNKATEVINYWQEEG 145
>gi|288965289|pdb|2KT9|A Chain A, Solution Nmr Structure Of Probable 30s Ribosomal Protein
Psrp-3 (Ycf65-Like Protein) From Synechocystis Sp.
(Strain Pcc 6803), Northeast Structural Genomics
Consortium Target Target Sgr46
Length = 116
Score = 96.3 bits (238), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 39/73 (53%), Positives = 59/73 (80%), Gaps = 1/73 (1%)
Query: 105 LVLKFIWMQNDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDSKPWISQTERIH 164
+LK +W+ ++ IA+DQ++ G GT PL+ Y+FWPR DAW++LK L++K WI++ +RI+
Sbjct: 10 FILKVLWLDQNVAIAVDQIV-GKGTSPLTSYFFWPRADAWQQLKDELEAKHWIAEADRIN 68
Query: 165 LLNQATDVINFWQ 177
+LNQAT+VINFWQ
Sbjct: 69 VLNQATEVINFWQ 81
>gi|33865046|ref|NP_896605.1| hypothetical protein SYNW0510 [Synechococcus sp. WH 8102]
gi|33638730|emb|CAE07025.1| conserved hypothetical protein [Synechococcus sp. WH 8102]
Length = 178
Score = 96.3 bits (238), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 38/80 (47%), Positives = 59/80 (73%), Gaps = 1/80 (1%)
Query: 101 EKRRLVLKFIWMQNDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDSKPWISQT 160
++ R +LK +W+ +++ +A+DQ++ G G PL+ Y+FWPR+DAWE LK L+ K WI+
Sbjct: 79 DEGRFLLKILWLPDNVALAVDQIV-GGGPSPLTSYFFWPREDAWETLKTELEGKSWITDN 137
Query: 161 ERIHLLNQATDVINFWQTSG 180
ER+ +LNQ T+VIN+WQ G
Sbjct: 138 ERVDVLNQTTEVINYWQEEG 157
>gi|148240338|ref|YP_001225725.1| hypothetical protein SynWH7803_2002 [Synechococcus sp. WH 7803]
gi|147848877|emb|CAK24428.1| Probable 30S ribosomal protein PSRP-3 (Ycf65-like protein)
[Synechococcus sp. WH 7803]
Length = 167
Score = 95.9 bits (237), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 38/80 (47%), Positives = 60/80 (75%), Gaps = 1/80 (1%)
Query: 101 EKRRLVLKFIWMQNDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDSKPWISQT 160
++ R +LK +W+ +++ +A+DQ++ G G PL+ Y+FWPR+DAWE LK L+ K WI+
Sbjct: 68 DEGRFLLKILWLPDNVALAVDQIV-GGGPSPLTAYFFWPREDAWETLKSELEGKSWITDN 126
Query: 161 ERIHLLNQATDVINFWQTSG 180
ER+ +LN+AT+VIN+WQ G
Sbjct: 127 ERVEVLNKATEVINYWQEEG 146
>gi|33863721|ref|NP_895281.1| hypothetical protein PMT1454 [Prochlorococcus marinus str. MIT
9313]
gi|33635304|emb|CAE21629.1| conserved hypothetical protein [Prochlorococcus marinus str. MIT
9313]
Length = 174
Score = 95.9 bits (237), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 38/80 (47%), Positives = 60/80 (75%), Gaps = 1/80 (1%)
Query: 101 EKRRLVLKFIWMQNDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDSKPWISQT 160
++ R +LK +W+ +++ +A+DQ++ G G PL+ Y+FWPR+DAWE LK L+ K WI+
Sbjct: 75 DEGRFLLKILWLPDNVALAVDQIV-GGGPSPLTAYFFWPREDAWETLKGELEGKSWITDN 133
Query: 161 ERIHLLNQATDVINFWQTSG 180
ER+ +LN+AT+VIN+WQ G
Sbjct: 134 ERVEVLNKATEVINYWQEEG 153
>gi|385269068|ref|YP_006234197.1| putativ ribosomal protein S3/Ycf65 [Eutreptiella gymnastica]
gi|384070824|emb|CCE26484.1| putativ ribosomal protein S3/Ycf65 [Eutreptiella gymnastica]
Length = 98
Score = 95.9 bits (237), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 43/74 (58%), Positives = 56/74 (75%), Gaps = 1/74 (1%)
Query: 104 RLVLKFIWMQNDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDSKPWISQTERI 163
+ VLKF+W++ I +ALDQ I G T P++ Y+FWPRKDAWEELK L++K WI Q E I
Sbjct: 3 KFVLKFLWLEKSIAVALDQQI-GFNTSPITEYFFWPRKDAWEELKNELETKLWIDQNEAI 61
Query: 164 HLLNQATDVINFWQ 177
+LNQ T+VIN+WQ
Sbjct: 62 VILNQTTEVINYWQ 75
>gi|78779917|ref|YP_398029.1| hypothetical protein PMT9312_1533 [Prochlorococcus marinus str. MIT
9312]
gi|78713416|gb|ABB50593.1| conserved hypothetical protein [Prochlorococcus marinus str. MIT
9312]
Length = 158
Score = 95.9 bits (237), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 41/87 (47%), Positives = 63/87 (72%), Gaps = 2/87 (2%)
Query: 94 GVVVKPNEKRRLVLKFIWMQNDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDS 153
G KP+E R ++K +W+ +++ +A+DQ++ G G PL+ Y FWPR DAWE+LK L++
Sbjct: 53 GYTPKPDEGR-FIIKVLWLPDNVALAVDQIV-GGGPSPLTAYNFWPRDDAWEKLKSELEN 110
Query: 154 KPWISQTERIHLLNQATDVINFWQTSG 180
K WI+ ER+ +LN+AT+VIN+WQ G
Sbjct: 111 KGWITDNERVEILNKATEVINYWQEEG 137
>gi|307153841|ref|YP_003889225.1| ribosomal protein PSRP-3/Ycf65 [Cyanothece sp. PCC 7822]
gi|306984069|gb|ADN15950.1| ribosomal protein PSRP-3/Ycf65 [Cyanothece sp. PCC 7822]
Length = 103
Score = 95.9 bits (237), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 41/74 (55%), Positives = 58/74 (78%), Gaps = 1/74 (1%)
Query: 104 RLVLKFIWMQNDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDSKPWISQTERI 163
R +LK +W+ ++ IA+D V+ G GT PL+ Y+FWPR DAW++LK L++K WIS+ ERI
Sbjct: 4 RFILKVLWLDANVAIAVDHVV-GKGTSPLTAYFFWPRNDAWQQLKDELEAKHWISENERI 62
Query: 164 HLLNQATDVINFWQ 177
+LN+AT+VINFWQ
Sbjct: 63 DVLNKATEVINFWQ 76
>gi|318042260|ref|ZP_07974216.1| hypothetical protein SCB01_11152 [Synechococcus sp. CB0101]
Length = 159
Score = 95.9 bits (237), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 37/80 (46%), Positives = 60/80 (75%), Gaps = 1/80 (1%)
Query: 101 EKRRLVLKFIWMQNDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDSKPWISQT 160
++ R ++K +W+ +++ +A+DQ++ G G PL+ Y+FWPR+DAWE LK L+ K WI+
Sbjct: 60 DEGRFLVKILWLPDNVALAVDQIV-GGGPSPLTSYFFWPREDAWETLKTELEGKSWITDN 118
Query: 161 ERIHLLNQATDVINFWQTSG 180
ER+ +LN+AT+VIN+WQ G
Sbjct: 119 ERVEILNKATEVINYWQEEG 138
>gi|159904100|ref|YP_001551444.1| hypothetical protein P9211_15591 [Prochlorococcus marinus str. MIT
9211]
gi|159889276|gb|ABX09490.1| conserved hypothetical protein [Prochlorococcus marinus str. MIT
9211]
Length = 155
Score = 95.9 bits (237), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 38/80 (47%), Positives = 60/80 (75%), Gaps = 1/80 (1%)
Query: 101 EKRRLVLKFIWMQNDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDSKPWISQT 160
++ R +LK +W+ +++ +A+DQ++ G G PL+ Y+FWPR+DAWE LK L+ K WI+
Sbjct: 56 DEGRFLLKILWLPDNVALAVDQIV-GGGPSPLTAYFFWPREDAWETLKTDLEDKGWITDH 114
Query: 161 ERIHLLNQATDVINFWQTSG 180
ER+ +LN+AT+VIN+WQ G
Sbjct: 115 ERVEILNKATEVINYWQEEG 134
>gi|427704364|ref|YP_007047586.1| Plastid and cyanobacterial ribosomal protein (PSRP-3 / Ycf65)
[Cyanobium gracile PCC 6307]
gi|427347532|gb|AFY30245.1| Plastid and cyanobacterial ribosomal protein (PSRP-3 / Ycf65)
[Cyanobium gracile PCC 6307]
Length = 160
Score = 95.5 bits (236), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 42/87 (48%), Positives = 63/87 (72%), Gaps = 2/87 (2%)
Query: 94 GVVVKPNEKRRLVLKFIWMQNDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDS 153
G K +E R LV K +W+ +++ +A+DQ++ G G PL+ Y+FWPR+DAWE LK L++
Sbjct: 55 GYTPKADEGRFLV-KILWLPDNVALAVDQIV-GGGPSPLTAYFFWPREDAWETLKGELEA 112
Query: 154 KPWISQTERIHLLNQATDVINFWQTSG 180
K WI+ ER+ +LN+AT+VIN+WQ G
Sbjct: 113 KSWITDNERVEILNKATEVINYWQEEG 139
>gi|126658602|ref|ZP_01729748.1| hypothetical protein CY0110_30061 [Cyanothece sp. CCY0110]
gi|126620039|gb|EAZ90762.1| hypothetical protein CY0110_30061 [Cyanothece sp. CCY0110]
Length = 103
Score = 95.5 bits (236), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 40/74 (54%), Positives = 58/74 (78%), Gaps = 1/74 (1%)
Query: 104 RLVLKFIWMQNDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDSKPWISQTERI 163
R +LK +W+ ++ IA+DQV+ G GT PL+ Y+FWPR DAW++LK L++K WI + ERI
Sbjct: 4 RFILKVLWLDANVAIAVDQVV-GKGTSPLTAYFFWPRNDAWQQLKEELEAKHWILEAERI 62
Query: 164 HLLNQATDVINFWQ 177
+LN+AT+VIN+WQ
Sbjct: 63 EVLNKATEVINYWQ 76
>gi|113476955|ref|YP_723016.1| hypothetical protein Tery_3451 [Trichodesmium erythraeum IMS101]
gi|123056394|sp|Q10YY1.1|RRP3_TRIEI RecName: Full=Probable 30S ribosomal protein PSRP-3; AltName:
Full=Ycf65-like protein
gi|110168003|gb|ABG52543.1| ribosomal protein PSRP-3/Ycf65 [Trichodesmium erythraeum IMS101]
Length = 99
Score = 95.5 bits (236), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 38/77 (49%), Positives = 61/77 (79%), Gaps = 1/77 (1%)
Query: 104 RLVLKFIWMQNDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDSKPWISQTERI 163
+ +LK +W+ +++ +A+DQV+ G+GT PL+ Y+FWPR DAWE+LK L+ K WIS+ +R+
Sbjct: 3 KFILKVVWLDDNVALAVDQVV-GNGTSPLTCYFFWPRNDAWEQLKKELEGKHWISEADRV 61
Query: 164 HLLNQATDVINFWQTSG 180
LLN+AT++I++WQ G
Sbjct: 62 ALLNKATEIISYWQEEG 78
>gi|124022209|ref|YP_001016516.1| hypothetical protein P9303_04991 [Prochlorococcus marinus str. MIT
9303]
gi|123962495|gb|ABM77251.1| conserved hypothetical protein [Prochlorococcus marinus str. MIT
9303]
Length = 149
Score = 95.5 bits (236), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 38/80 (47%), Positives = 60/80 (75%), Gaps = 1/80 (1%)
Query: 101 EKRRLVLKFIWMQNDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDSKPWISQT 160
++ R +LK +W+ +++ +A+DQ++ G G PL+ Y+FWPR+DAWE LK L+ K WI+
Sbjct: 50 DEGRFLLKILWLPDNVALAVDQIV-GGGPSPLTAYFFWPREDAWETLKGELEGKSWITDN 108
Query: 161 ERIHLLNQATDVINFWQTSG 180
ER+ +LN+AT+VIN+WQ G
Sbjct: 109 ERVEVLNKATEVINYWQEEG 128
>gi|27923877|sp|Q9BAC5.1|RRP3_EUGGA RecName: Full=Probable 30S ribosomal protein 3, chloroplastic;
Short=PSRP-3
gi|13487719|gb|AAK27689.1|AF347930_1 ycf65 [Euglena granulata]
gi|77744786|gb|ABB02344.1| Ycf65 [Euglena granulata]
Length = 103
Score = 95.5 bits (236), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 39/82 (47%), Positives = 60/82 (73%), Gaps = 1/82 (1%)
Query: 102 KRRLVLKFIWMQNDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDSKPWISQTE 161
K+ L+LKF+W++ I + LDQ + G PL+ ++FWP+KDAWEE+K L+S+ WI+Q++
Sbjct: 2 KKELILKFLWLEKSIAVCLDQKV-GDSITPLTEFFFWPQKDAWEEMKNFLESQSWITQSD 60
Query: 162 RIHLLNQATDVINFWQTSGGNL 183
++LLN T+VINFWQ N+
Sbjct: 61 SVNLLNNITEVINFWQERDTNV 82
>gi|113953547|ref|YP_731483.1| hypothetical protein sync_2286 [Synechococcus sp. CC9311]
gi|113880898|gb|ABI45856.1| Ycf65 homolog [Synechococcus sp. CC9311]
Length = 126
Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 38/80 (47%), Positives = 60/80 (75%), Gaps = 1/80 (1%)
Query: 101 EKRRLVLKFIWMQNDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDSKPWISQT 160
++ R +LK +W+ +++ +A+DQ++ G G PL+ Y+FWPR+DAWE LK L+ K WI+
Sbjct: 27 DEGRFLLKILWLPDNVALAVDQIV-GGGPSPLTAYFFWPREDAWETLKSELEGKSWITDN 85
Query: 161 ERIHLLNQATDVINFWQTSG 180
ER+ +LN+AT+VIN+WQ G
Sbjct: 86 ERVEVLNKATEVINYWQEEG 105
>gi|218441978|ref|YP_002380307.1| hypothetical protein PCC7424_5088 [Cyanothece sp. PCC 7424]
gi|218174706|gb|ACK73439.1| ribosomal protein PSRP-3/Ycf65 [Cyanothece sp. PCC 7424]
Length = 103
Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 40/74 (54%), Positives = 58/74 (78%), Gaps = 1/74 (1%)
Query: 104 RLVLKFIWMQNDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDSKPWISQTERI 163
R +LK +W+ ++ IA+D V+ G GT PL+ Y+FWPR DAW++LK L++K WIS+ +RI
Sbjct: 4 RFILKVLWLDANVAIAVDHVV-GKGTSPLTAYFFWPRNDAWQQLKDELEAKHWISENDRI 62
Query: 164 HLLNQATDVINFWQ 177
+LN+AT+VINFWQ
Sbjct: 63 EVLNKATEVINFWQ 76
>gi|373445164|gb|AEY70776.1| putative ribosomal protein 3 (chloroplast) [Euglena viridis]
Length = 101
Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 41/74 (55%), Positives = 56/74 (75%), Gaps = 1/74 (1%)
Query: 104 RLVLKFIWMQNDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDSKPWISQTERI 163
R +LKF+W++ I + LDQ I G T PL+ Y+FWP+KDAWEE+K+ L++K WI++ E I
Sbjct: 3 RFILKFLWLEKSIAVCLDQKI-GDRTTPLTEYFFWPQKDAWEEMKIFLENKAWITENESI 61
Query: 164 HLLNQATDVINFWQ 177
LLNQ T+VIN WQ
Sbjct: 62 LLLNQITEVINDWQ 75
>gi|194476693|ref|YP_002048872.1| hypothetical protein PCC_0212 [Paulinella chromatophora]
gi|171191700|gb|ACB42662.1| hypothetical protein PCC_0212 [Paulinella chromatophora]
Length = 171
Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 39/80 (48%), Positives = 60/80 (75%), Gaps = 1/80 (1%)
Query: 101 EKRRLVLKFIWMQNDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDSKPWISQT 160
++ R +LK +W+ ++ +A+DQ++ G G PL+ Y+FWPR+DAWE LK L++K WI+
Sbjct: 72 DEGRFMLKILWLPENVALAVDQIV-GGGPSPLTAYFFWPREDAWEILKNELEAKSWITDN 130
Query: 161 ERIHLLNQATDVINFWQTSG 180
ERI +LN+AT+VIN+WQ G
Sbjct: 131 ERIEILNKATEVINYWQGDG 150
>gi|46577391|sp|Q7V5U0.2|RRP3_PROMM RecName: Full=Probable 30S ribosomal protein PSRP-3; AltName:
Full=Ycf65-like protein
Length = 126
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 38/80 (47%), Positives = 60/80 (75%), Gaps = 1/80 (1%)
Query: 101 EKRRLVLKFIWMQNDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDSKPWISQT 160
++ R +LK +W+ +++ +A+DQ++ G G PL+ Y+FWPR+DAWE LK L+ K WI+
Sbjct: 27 DEGRFLLKILWLPDNVALAVDQIV-GGGPSPLTAYFFWPREDAWETLKGELEGKSWITDN 85
Query: 161 ERIHLLNQATDVINFWQTSG 180
ER+ +LN+AT+VIN+WQ G
Sbjct: 86 ERVEVLNKATEVINYWQEEG 105
>gi|332707646|ref|ZP_08427674.1| ribosomal protein PSRP-3/Ycf65 [Moorea producens 3L]
gi|332353555|gb|EGJ33067.1| ribosomal protein PSRP-3/Ycf65 [Moorea producens 3L]
Length = 99
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 37/77 (48%), Positives = 60/77 (77%), Gaps = 1/77 (1%)
Query: 104 RLVLKFIWMQNDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDSKPWISQTERI 163
+ +LK +W+ ++ +A+DQ++ G GT PL+ Y+FWPR DAWE+LK +++K WI++ +RI
Sbjct: 3 KFLLKVLWLDENVALAVDQIV-GKGTSPLTCYFFWPRNDAWEQLKDEMEAKHWITEADRI 61
Query: 164 HLLNQATDVINFWQTSG 180
+LN+AT+VIN+WQ G
Sbjct: 62 EILNKATEVINYWQEEG 78
>gi|317968996|ref|ZP_07970386.1| hypothetical protein SCB02_05633 [Synechococcus sp. CB0205]
Length = 158
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 60/80 (75%), Gaps = 1/80 (1%)
Query: 101 EKRRLVLKFIWMQNDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDSKPWISQT 160
++ R ++K +W+ +++ +A+DQ++ G G PL+ Y+FWPR+DAWE L+ L+ K WI+
Sbjct: 59 DEGRFLVKILWLPDNVALAVDQIV-GGGPSPLTSYFFWPREDAWETLRTELEGKSWITDN 117
Query: 161 ERIHLLNQATDVINFWQTSG 180
ER+ +LN+AT+VIN+WQ G
Sbjct: 118 ERVEVLNKATEVINYWQEEG 137
>gi|224178106|ref|YP_002600912.1| hypothetical chloroplast RF65 [Pyramimonas parkeae]
gi|215882773|gb|ACJ71146.1| hypothetical chloroplast RF65 [Pyramimonas parkeae]
Length = 97
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/82 (51%), Positives = 59/82 (71%), Gaps = 1/82 (1%)
Query: 104 RLVLKFIWMQNDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDSKPWISQTERI 163
+ VL+ +W++ +GIALDQ + G+ T PL+ Y+FWPRKDAW+ELK L++ W+SQTE I
Sbjct: 3 KFVLRVLWLEKSLGIALDQRV-GNETEPLTEYFFWPRKDAWDELKERLNNSSWVSQTEAI 61
Query: 164 HLLNQATDVINFWQTSGGNLQQ 185
LLNQ TD+I WQ G+ +
Sbjct: 62 SLLNQTTDLIKTWQEKKGSFSK 83
>gi|425437175|ref|ZP_18817600.1| putative 30S ribosomal protein PSRP-3 [Microcystis aeruginosa PCC
9432]
gi|425462774|ref|ZP_18842241.1| putative 30S ribosomal protein PSRP-3 [Microcystis aeruginosa PCC
9808]
gi|440754553|ref|ZP_20933755.1| putative 30S ribosomal protein PSRP-3 [Microcystis aeruginosa
TAIHU98]
gi|443662989|ref|ZP_21133035.1| putative 30S ribosomal protein PSRP-3 [Microcystis aeruginosa
DIANCHI905]
gi|159028800|emb|CAO89971.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
gi|389677894|emb|CCH93212.1| putative 30S ribosomal protein PSRP-3 [Microcystis aeruginosa PCC
9432]
gi|389824109|emb|CCI27203.1| putative 30S ribosomal protein PSRP-3 [Microcystis aeruginosa PCC
9808]
gi|440174759|gb|ELP54128.1| putative 30S ribosomal protein PSRP-3 [Microcystis aeruginosa
TAIHU98]
gi|443331993|gb|ELS46626.1| putative 30S ribosomal protein PSRP-3 [Microcystis aeruginosa
DIANCHI905]
Length = 107
Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 60/76 (78%), Gaps = 1/76 (1%)
Query: 102 KRRLVLKFIWMQNDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDSKPWISQTE 161
+ + +LK +W+ ++ IA+DQV+ G GT PL+ Y+FWPR DAW++L+ L++K WI +++
Sbjct: 6 ESKFILKVLWLDQNVAIAVDQVV-GKGTSPLTAYFFWPRNDAWQQLQEELEAKHWIDESD 64
Query: 162 RIHLLNQATDVINFWQ 177
R+ +LN+AT+VINFWQ
Sbjct: 65 RVDVLNKATEVINFWQ 80
>gi|425444693|ref|ZP_18824739.1| putative 30S ribosomal protein PSRP-3 [Microcystis aeruginosa PCC
9443]
gi|425454411|ref|ZP_18834151.1| putative 30S ribosomal protein PSRP-3 [Microcystis aeruginosa PCC
9807]
gi|389735504|emb|CCI00998.1| putative 30S ribosomal protein PSRP-3 [Microcystis aeruginosa PCC
9443]
gi|389804936|emb|CCI15663.1| putative 30S ribosomal protein PSRP-3 [Microcystis aeruginosa PCC
9807]
Length = 107
Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 60/76 (78%), Gaps = 1/76 (1%)
Query: 102 KRRLVLKFIWMQNDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDSKPWISQTE 161
+ + +LK +W+ ++ IA+DQV+ G GT PL+ Y+FWPR DAW++L+ L++K WI +++
Sbjct: 6 ESKFILKVLWLDQNVAIAVDQVV-GKGTSPLTAYFFWPRNDAWQQLQEELEAKHWIDESD 64
Query: 162 RIHLLNQATDVINFWQ 177
R+ +LN+AT+VINFWQ
Sbjct: 65 RVDVLNKATEVINFWQ 80
>gi|166362835|ref|YP_001655108.1| hypothetical protein MAE_00940 [Microcystis aeruginosa NIES-843]
gi|390440418|ref|ZP_10228747.1| putative 30S ribosomal protein PSRP-3 [Microcystis sp. T1-4]
gi|422302789|ref|ZP_16390148.1| putative 30S ribosomal protein PSRP-3 [Microcystis aeruginosa PCC
9806]
gi|425441141|ref|ZP_18821427.1| putative 30S ribosomal protein PSRP-3 [Microcystis aeruginosa PCC
9717]
gi|425449331|ref|ZP_18829172.1| putative 30S ribosomal protein PSRP-3 [Microcystis aeruginosa PCC
7941]
gi|425466069|ref|ZP_18845372.1| putative 30S ribosomal protein PSRP-3 [Microcystis aeruginosa PCC
9809]
gi|425469738|ref|ZP_18848650.1| putative 30S ribosomal protein PSRP-3 [Microcystis aeruginosa PCC
9701]
gi|166085208|dbj|BAF99915.1| hypothetical protein MAE_00940 [Microcystis aeruginosa NIES-843]
gi|389718232|emb|CCH97787.1| putative 30S ribosomal protein PSRP-3 [Microcystis aeruginosa PCC
9717]
gi|389764045|emb|CCI09550.1| putative 30S ribosomal protein PSRP-3 [Microcystis aeruginosa PCC
7941]
gi|389787945|emb|CCI16801.1| putative 30S ribosomal protein PSRP-3 [Microcystis aeruginosa PCC
9806]
gi|389831582|emb|CCI25559.1| putative 30S ribosomal protein PSRP-3 [Microcystis aeruginosa PCC
9809]
gi|389836160|emb|CCI32873.1| putative 30S ribosomal protein PSRP-3 [Microcystis sp. T1-4]
gi|389880391|emb|CCI38857.1| putative 30S ribosomal protein PSRP-3 [Microcystis aeruginosa PCC
9701]
Length = 107
Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 60/76 (78%), Gaps = 1/76 (1%)
Query: 102 KRRLVLKFIWMQNDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDSKPWISQTE 161
+ + +LK +W+ ++ IA+DQV+ G GT PL+ Y+FWPR DAW++L+ L++K WI +++
Sbjct: 6 ESKFILKVLWLDQNVAIAVDQVV-GKGTSPLTAYFFWPRNDAWQQLQEELEAKHWIDESD 64
Query: 162 RIHLLNQATDVINFWQ 177
R+ +LN+AT+VINFWQ
Sbjct: 65 RVDVLNKATEVINFWQ 80
>gi|218248402|ref|YP_002373773.1| hypothetical protein PCC8801_3655 [Cyanothece sp. PCC 8801]
gi|257061468|ref|YP_003139356.1| hypothetical protein Cyan8802_3709 [Cyanothece sp. PCC 8802]
gi|218168880|gb|ACK67617.1| ribosomal protein PSRP-3/Ycf65 [Cyanothece sp. PCC 8801]
gi|256591634|gb|ACV02521.1| ribosomal protein PSRP-3/Ycf65 [Cyanothece sp. PCC 8802]
Length = 120
Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 39/74 (52%), Positives = 57/74 (77%), Gaps = 1/74 (1%)
Query: 104 RLVLKFIWMQNDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDSKPWISQTERI 163
R +LK +W+ ++ IA+D ++ G G PL+ Y+FWPR DAW++LK L++K WIS+ ERI
Sbjct: 21 RFLLKVLWLDANVAIAVDHLV-GKGNSPLTAYFFWPRNDAWQQLKDELEAKHWISEGERI 79
Query: 164 HLLNQATDVINFWQ 177
+LNQAT+VIN+WQ
Sbjct: 80 EILNQATEVINYWQ 93
>gi|67925085|ref|ZP_00518462.1| Plastid and cyanobacterial ribosomal protein PSRP-3/Ycf65
[Crocosphaera watsonii WH 8501]
gi|67853059|gb|EAM48441.1| Plastid and cyanobacterial ribosomal protein PSRP-3/Ycf65
[Crocosphaera watsonii WH 8501]
Length = 103
Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 40/74 (54%), Positives = 58/74 (78%), Gaps = 1/74 (1%)
Query: 104 RLVLKFIWMQNDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDSKPWISQTERI 163
R +LK +W+ ++ IA+DQV+ G GT PL+ Y+FWPR DAW++LK L++K WI + ERI
Sbjct: 4 RFILKVLWLDANVAIAVDQVV-GKGTSPLTAYFFWPRNDAWQQLKDELEAKHWILEPERI 62
Query: 164 HLLNQATDVINFWQ 177
+LN+AT+VIN+WQ
Sbjct: 63 DVLNKATEVINYWQ 76
>gi|159487801|ref|XP_001701911.1| plastid-specific ribosomal protein 3 [Chlamydomonas reinhardtii]
gi|158281130|gb|EDP06886.1| plastid-specific ribosomal protein 3 [Chlamydomonas reinhardtii]
Length = 298
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 37/71 (52%), Positives = 52/71 (73%)
Query: 107 LKFIWMQNDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDSKPWISQTERIHLL 166
L +W ++ +A+DQV PL+ YYFWPR+DAWEEL++ L+S+PWIS+ +RI LL
Sbjct: 205 LNVLWTDKNLAVAIDQVYSRGQVSPLTEYYFWPRQDAWEELRINLESRPWISERDRIILL 264
Query: 167 NQATDVINFWQ 177
N+ T +INFWQ
Sbjct: 265 NRLTQLINFWQ 275
>gi|302844241|ref|XP_002953661.1| hypothetical protein VOLCADRAFT_82361 [Volvox carteri f.
nagariensis]
gi|300261070|gb|EFJ45285.1| hypothetical protein VOLCADRAFT_82361 [Volvox carteri f.
nagariensis]
Length = 332
Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 37/71 (52%), Positives = 52/71 (73%)
Query: 107 LKFIWMQNDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDSKPWISQTERIHLL 166
L +W + ++ +A+DQV PL+ YYFWPR+DAWEEL+V L+ +PWIS+ +RI LL
Sbjct: 239 LNVLWTEKNLAVAIDQVYSRGQVSPLTEYYFWPRQDAWEELRVNLEMRPWISERDRIILL 298
Query: 167 NQATDVINFWQ 177
N+ T +INFWQ
Sbjct: 299 NRLTQLINFWQ 309
>gi|32307518|gb|AAP79164.1| plastid protein ycf65 [Bigelowiella natans]
Length = 343
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 55/71 (77%)
Query: 107 LKFIWMQNDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDSKPWISQTERIHLL 166
L +W++ I +A+D++ PG+ IPL+ ++ WP+ DAWE++K +++SK WI++ I++L
Sbjct: 148 LNVLWLEKHIALAVDEIYPGNKRIPLTTFHLWPQTDAWEDIKSIMESKSWIAEASTINVL 207
Query: 167 NQATDVINFWQ 177
NQAT++INFWQ
Sbjct: 208 NQATEIINFWQ 218
>gi|27923873|sp|Q9BAB9.1|RRP3_EUGVI RecName: Full=Probable 30S ribosomal protein 3, chloroplastic;
Short=PSRP-3
gi|13487730|gb|AAK27696.1|AF347934_1 ycf65 [Euglena viridis]
gi|77744814|gb|ABB02368.1| Ycf65 [Euglena viridis]
Length = 101
Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 38/75 (50%), Positives = 55/75 (73%), Gaps = 1/75 (1%)
Query: 103 RRLVLKFIWMQNDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDSKPWISQTER 162
++ VLKF+W+Q + ++LDQ I G PL+ +YFWP+ DAWEE++ L+SK WI+ +E
Sbjct: 2 QKFVLKFLWLQRSVAVSLDQKI-GDNVSPLTEFYFWPQCDAWEEMRNFLESKSWINSSES 60
Query: 163 IHLLNQATDVINFWQ 177
I LLNQ T++IN WQ
Sbjct: 61 ILLLNQVTEIINDWQ 75
>gi|27923874|sp|Q9BAC0.1|RRP3_EUGST RecName: Full=Probable 30S ribosomal protein 3, chloroplastic;
Short=PSRP-3
gi|13487727|gb|AAK27694.1|AF347933_1 ycf65 [Euglena stellata]
gi|77744808|gb|ABB02363.1| Ycf65 [Euglena stellata]
Length = 101
Score = 86.7 bits (213), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 36/73 (49%), Positives = 53/73 (72%), Gaps = 1/73 (1%)
Query: 105 LVLKFIWMQNDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDSKPWISQTERIH 164
+LKF+W++ + + LDQ I G T P++ ++FWP+ DAWEE+K L+ K WI Q+E +
Sbjct: 4 FILKFLWLEKSVAVGLDQKI-GDRTTPVTEFFFWPQHDAWEEMKNFLEDKSWIDQSEVVI 62
Query: 165 LLNQATDVINFWQ 177
LLNQ T+VIN+WQ
Sbjct: 63 LLNQITEVINYWQ 75
>gi|353441294|gb|AEQ94252.1| hypothetical protein (chloroplast) [Eutreptia viridis]
Length = 100
Score = 85.5 bits (210), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 51/77 (66%), Gaps = 1/77 (1%)
Query: 104 RLVLKFIWMQNDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDSKPWISQTERI 163
+ LKF+W+ + ALD+ I G P++ Y+FWPR DAWEELK+ L+ K WI +E I
Sbjct: 3 KFKLKFLWLDKSLAFALDEKI-GEKINPITEYFFWPRTDAWEELKIELEKKNWIQHSESI 61
Query: 164 HLLNQATDVINFWQTSG 180
+LNQ T++IN+W+
Sbjct: 62 EILNQTTEIINYWEEKN 78
>gi|77744800|gb|ABB02356.1| Ycf65 [Lepocinclis spirogyroides]
Length = 102
Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 36/75 (48%), Positives = 55/75 (73%), Gaps = 2/75 (2%)
Query: 104 RLVLKFIWM-QNDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDSKPWISQTER 162
+ +L+F+W Q I +ALDQV +IP++ Y+FWPR DAW+++++ L SK WIS T+
Sbjct: 3 KFLLRFLWFGQKGIAVALDQVCVER-SIPITEYFFWPRSDAWDDMRICLKSKTWISPTDL 61
Query: 163 IHLLNQATDVINFWQ 177
+ +LNQ T++INFWQ
Sbjct: 62 VSILNQLTEIINFWQ 76
>gi|17230660|ref|NP_487208.1| hypothetical protein asr3168, partial [Nostoc sp. PCC 7120]
gi|17132263|dbj|BAB74867.1| asr3168 [Nostoc sp. PCC 7120]
Length = 78
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 36/57 (63%), Positives = 44/57 (77%)
Query: 126 GHGTIPLSPYYFWPRKDAWEELKVLLDSKPWISQTERIHLLNQATDVINFWQTSGGN 182
G GT PL+ Y+FWPR DAWEELK L+SK WIS +R+ LLN+AT+VIN+WQ G N
Sbjct: 3 GKGTSPLTKYFFWPRNDAWEELKKELESKHWISDLDRVELLNKATEVINYWQEEGRN 59
>gi|416381170|ref|ZP_11684176.1| Plastid and cyanobacterial ribosomal protein PSRP-3/Ycf65
[Crocosphaera watsonii WH 0003]
gi|357265570|gb|EHJ14319.1| Plastid and cyanobacterial ribosomal protein PSRP-3/Ycf65
[Crocosphaera watsonii WH 0003]
Length = 88
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 36/62 (58%), Positives = 50/62 (80%), Gaps = 1/62 (1%)
Query: 116 IGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDSKPWISQTERIHLLNQATDVINF 175
+ IA+DQV+ G GT PL+ Y+FWPR DAW++LK L++K WI + ERI +LN+AT+VIN+
Sbjct: 1 MAIAVDQVV-GKGTSPLTAYFFWPRNDAWQQLKDELEAKHWILEPERIDVLNKATEVINY 59
Query: 176 WQ 177
WQ
Sbjct: 60 WQ 61
>gi|27923876|sp|Q9BAC3.1|RRP3_EUGMU RecName: Full=Probable 30S ribosomal protein 3, chloroplastic;
Short=PSRP-3
gi|13487722|gb|AAK27691.1|AF347931_1 ycf65 [Euglena mutabilis]
gi|77744793|gb|ABB02350.1| Ycf65 [Euglena mutabilis]
Length = 101
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 51/78 (65%)
Query: 103 RRLVLKFIWMQNDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDSKPWISQTER 162
R VLKF+ + I + LDQ I PL+ Y+FWP++DAWE++K +D+ WI +
Sbjct: 2 ERFVLKFLLIDKVIAVCLDQKISNERLNPLTEYFFWPQRDAWEDMKNFIDNNDWIDPKDA 61
Query: 163 IHLLNQATDVINFWQTSG 180
+++LN+ T+VINFW+ S
Sbjct: 62 VNILNRITEVINFWEESA 79
>gi|28380143|sp|Q9TLZ0.3|RRP3_CYACA RecName: Full=Probable 30S ribosomal protein 3, chloroplastic;
Short=PSRP-3
Length = 101
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 55/73 (75%), Gaps = 1/73 (1%)
Query: 107 LKFIWMQNDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDSKPWISQTERIHLL 166
+K +W++N+I IA+D++I G P++ YYFWPR DAWE+LK+ LDS+P + +++ +L
Sbjct: 6 IKVLWLRNNIAIAVDRLI-GDSLFPMTYYYFWPRTDAWEQLKIELDSQPGLFAKDKVVIL 64
Query: 167 NQATDVINFWQTS 179
NQ T +I++WQ +
Sbjct: 65 NQVTRIIDYWQEN 77
>gi|299890950|gb|ADJ57449.1| hypothetical chloroplast RF65 [uncultured prymnesiophyte C19847]
Length = 98
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 52/71 (73%), Gaps = 1/71 (1%)
Query: 107 LKFIWMQNDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDSKPWISQTERIHLL 166
LK +W + +G++L+Q+I H +IP++ Y+ WP+ DAWE+LK LDSKPW+ + E++ +L
Sbjct: 7 LKLVWQEQFLGLSLNQIIDNH-SIPMTSYFIWPKTDAWEQLKFELDSKPWLQEAEKVMVL 65
Query: 167 NQATDVINFWQ 177
N T ++N W+
Sbjct: 66 NNITRLMNQWR 76
>gi|27923875|sp|Q9BAC2.1|RRP3_EUGMY RecName: Full=Probable 30S ribosomal protein 3, chloroplastic;
Short=PSRP-3
gi|13487725|gb|AAK27693.1|AF347932_1 ycf65 [Euglena myxocylindracea]
gi|34980274|gb|AAQ84049.1| hypothetical chloroplast protein 65 [Euglena myxocylindracea]
Length = 101
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 52/74 (70%), Gaps = 1/74 (1%)
Query: 103 RRLVLKFIWMQNDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDSKPWISQTER 162
++ V K + ++N I I LDQ + T P++ Y+FWP+ DAW+EL LL+SKPWI+ + R
Sbjct: 2 QKFVWKVVCLENKIAICLDQQL-ADKTSPVTEYFFWPQSDAWDELNKLLESKPWITLSNR 60
Query: 163 IHLLNQATDVINFW 176
I +LN TD+IN+W
Sbjct: 61 IFVLNILTDLINYW 74
>gi|374249487|ref|YP_005088706.1| ycf65 gene product [Phaeocystis antarctica]
gi|340008178|gb|AEK26810.1| Ycf65 [Phaeocystis antarctica]
Length = 84
Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 51/76 (67%), Gaps = 1/76 (1%)
Query: 104 RLVLKFIWMQNDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDSKPWISQTERI 163
R L +W++N++GIA+DQ+ G IPL+ Y+FWP+ D W++++ L++KPWI E+
Sbjct: 4 RFKLNILWLENELGIAIDQIQSGE-QIPLTDYFFWPKSDTWDQIRRELETKPWILTKEKA 62
Query: 164 HLLNQATDVINFWQTS 179
LLN ++N WQ S
Sbjct: 63 QLLNATAPIMNQWQNS 78
>gi|376403740|ref|YP_005090101.1| ycf65 gene product (chloroplast) [Fucus vesiculosus]
gi|269991303|emb|CAX12486.1| conserved hypothetical plastid protein [Fucus vesiculosus]
Length = 107
Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 52/77 (67%)
Query: 100 NEKRRLVLKFIWMQNDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDSKPWISQ 159
N+ V K IW +N +G+A+D+ + + T+PL+ ++FWPR++ W+ LK L KPWIS+
Sbjct: 3 NKNNIYVFKIIWSKNYLGLAVDKKLQNNQTLPLTTFFFWPRENGWQLLKEELSCKPWISK 62
Query: 160 TERIHLLNQATDVINFW 176
+ I +LN ++IN+W
Sbjct: 63 EDSIDILNSYNEIINYW 79
>gi|363399149|gb|AEW12966.1| putative ribosomal protein 3 [Colacium vesiculosum]
Length = 101
Score = 75.9 bits (185), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 47/75 (62%), Gaps = 1/75 (1%)
Query: 103 RRLVLKFIWMQNDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDSKPWISQTER 162
++ L F+W IG+AL+Q + G IP++PY +WP DAW+ ++V LD K WIS
Sbjct: 2 KKFALNFLWSDKAIGVALEQKV-GEKVIPITPYVYWPSGDAWDVMRVYLDQKNWISNEYG 60
Query: 163 IHLLNQATDVINFWQ 177
L + TDVIN+WQ
Sbjct: 61 FVFLTRITDVINYWQ 75
>gi|215400723|ref|YP_002327484.1| probable 30S ribosomal protein [Vaucheria litorea]
gi|194441173|gb|ACF70901.1| probable 30S ribosomal protein [Vaucheria litorea]
Length = 109
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 52/75 (69%)
Query: 102 KRRLVLKFIWMQNDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDSKPWISQTE 161
K++ + K IW + IGIA++Q+ + IPL+ +YFWP++D W+ LK+ LDSKPWI ++
Sbjct: 4 KQKYLFKIIWSRTSIGIAVNQIYDNYYDIPLTTFYFWPKEDGWQLLKLELDSKPWILESS 63
Query: 162 RIHLLNQATDVINFW 176
+ +LN +I++W
Sbjct: 64 KNIILNGYALLIDYW 78
>gi|269101006|ref|YP_003289154.1| Probable plastid-specific 30S ribosomal protein [Ectocarpus
siliculosus]
gi|266631514|emb|CAV31185.1| Probable plastid-specific 30S ribosomal protein [Ectocarpus
siliculosus]
gi|270118644|emb|CAT18690.1| Probable plastid-specific 30S ribosomal protein [Ectocarpus
siliculosus]
Length = 106
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 52/74 (70%)
Query: 106 VLKFIWMQNDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDSKPWISQTERIHL 165
V K +W +N +G+A+D+ + + T+P++ ++FWPR++ W+ LK L KPW+S+ + I +
Sbjct: 8 VFKILWSKNYLGLAVDKKLENNSTMPITTFFFWPRENGWQLLKEELSYKPWMSKDDSIDI 67
Query: 166 LNQATDVINFWQTS 179
LN T +IN+W ++
Sbjct: 68 LNNYTTIINYWLSN 81
>gi|403066656|ref|YP_006639145.1| putative plastid-specific 30S ribosomal protein (chloroplast)
[Saccharina japonica]
gi|378787569|gb|AFC40199.1| putative plastid-specific 30S ribosomal protein (chloroplast)
[Saccharina japonica]
Length = 106
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 52/75 (69%)
Query: 102 KRRLVLKFIWMQNDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDSKPWISQTE 161
K V K +W +N +G+A+D+ + + T+P++ ++FWPR++ W+ LK L KPW+S+ +
Sbjct: 4 KSVYVFKILWSKNYLGLAVDKKLQNNRTLPITTFFFWPRENGWQLLKEELSYKPWMSKDD 63
Query: 162 RIHLLNQATDVINFW 176
I +LN T++IN+W
Sbjct: 64 SIDILNAYTEIINYW 78
>gi|77744778|gb|ABB02337.1| Ycf65 [Euglenaria anabaena]
Length = 105
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 49/75 (65%), Gaps = 1/75 (1%)
Query: 103 RRLVLKFIWMQNDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDSKPWISQTER 162
R +LKF+W++ IG+ALDQ + G T PL+ + FWP +D+W L++ I++ E+
Sbjct: 2 ERFILKFLWLEKSIGVALDQKV-GEKTTPLNDFKFWPGEDSWNITLKYLENSVIITEAEK 60
Query: 163 IHLLNQATDVINFWQ 177
+ LLN TDVI +WQ
Sbjct: 61 VRLLNTLTDVITYWQ 75
>gi|189095327|ref|YP_001936340.1| putative ribosomal protein 3 [Heterosigma akashiwo]
gi|157694670|gb|ABV65946.1| 30S ribosomal plastid-specific protein 3 [Heterosigma akashiwo]
gi|157777901|gb|ABV70087.1| 30S ribosomal plastid-specific protein 3 [Heterosigma akashiwo]
Length = 102
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 49/74 (66%)
Query: 104 RLVLKFIWMQNDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDSKPWISQTERI 163
+ K +W++ IGI++D+ + +P++ +YFWPR D W+ LK L+ KPW+S+ ER+
Sbjct: 3 KFYFKVVWLKYCIGISVDKKLKNSYRVPITSFYFWPRVDGWKLLKHELELKPWLSERERV 62
Query: 164 HLLNQATDVINFWQ 177
+LN T +I+ W+
Sbjct: 63 TILNGYTRIISIWK 76
>gi|30468119|ref|NP_849006.1| ORF92 [Cyanidioschyzon merolae strain 10D]
gi|30409219|dbj|BAC76168.1| ycf65 (chloroplast) [Cyanidioschyzon merolae strain 10D]
Length = 92
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 48/77 (62%)
Query: 104 RLVLKFIWMQNDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDSKPWISQTERI 163
+L LK + + IA+DQ + +P++ YYFWP DAW LK L+SK WIS +R
Sbjct: 2 KLKLKVVSSNQLLAIAVDQEMKNKWFMPVTCYYFWPTTDAWNLLKTELESKRWISAIQRK 61
Query: 164 HLLNQATDVINFWQTSG 180
LL++AT VIN WQ++
Sbjct: 62 VLLDEATYVINHWQSNS 78
>gi|71842289|ref|YP_277377.1| putative ribosomal protein 3 [Emiliania huxleyi]
gi|60101532|gb|AAX13876.1| hypothetical chloroplast RF65 [Emiliania huxleyi]
gi|336286202|gb|AEI29538.1| putative ribosomal protein 3 [Emiliania huxleyi]
Length = 100
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 52/75 (69%), Gaps = 1/75 (1%)
Query: 103 RRLVLKFIWMQNDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDSKPWISQTER 162
+R + +W +N IGIA+D++ ++ ++ YY+WP+ DAWE++++ L++K WI + E+
Sbjct: 3 QRFGFRLVWGENSIGIAIDEIFLTTPSL-ITNYYYWPQTDAWEQIRLDLETKIWIPKDEQ 61
Query: 163 IHLLNQATDVINFWQ 177
+LN T+++N W+
Sbjct: 62 RKILNTITEILNSWK 76
>gi|297737841|emb|CBI27042.3| unnamed protein product [Vitis vinifera]
Length = 85
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 46/92 (50%), Gaps = 35/92 (38%)
Query: 91 EKLGVVVKPNEKRRLVLKFIWMQNDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVL 150
+K+ V+VK E RLVLKF+WM+ +IG
Sbjct: 27 QKVEVIVKVMETPRLVLKFVWMEKNIG--------------------------------- 53
Query: 151 LDSKPWISQTERIHLLNQATDVINFWQTSGGN 182
SKPWISQ + I LLN+ATD+IN WQ SGGN
Sbjct: 54 --SKPWISQKKMIILLNEATDIINLWQQSGGN 83
>gi|11465482|ref|NP_045127.1| putative ribosomal protein 3 [Cyanidium caldarium]
gi|6466385|gb|AAF12967.1|AF022186_90 unknown [Cyanidium caldarium]
Length = 72
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 37/48 (77%)
Query: 132 LSPYYFWPRKDAWEELKVLLDSKPWISQTERIHLLNQATDVINFWQTS 179
++ YYFWPR DAWE+LK+ LDS+P + +++ +LNQ T +I++WQ +
Sbjct: 1 MTYYYFWPRTDAWEQLKIELDSQPGLFAKDKVVILNQVTRIIDYWQEN 48
>gi|194247863|dbj|BAG55386.1| hypothetical protein [chlorophyte sp. MBIC11204]
Length = 57
Score = 42.0 bits (97), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 24/27 (88%)
Query: 151 LDSKPWISQTERIHLLNQATDVINFWQ 177
L+S+PW+S+ +++ LLN+ T+VINFWQ
Sbjct: 8 LESRPWVSERDKVLLLNKTTEVINFWQ 34
>gi|397629208|gb|EJK69256.1| hypothetical protein THAOC_09503 [Thalassiosira oceanica]
Length = 224
Score = 35.8 bits (81), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 5/64 (7%)
Query: 3 SMSFHCHINAVLTPDTSSATAKWPSQN-----LPLKPFTKTSVMLRPQISYLKLRHGTRQ 57
S+ H + +PDTS +A P QN +P T+T V RP+++Y K HG Q
Sbjct: 67 SLHGHHEQHGHASPDTSHPSATTPYQNGNGGTVPSSSRTRTRVPARPELTYAKGAHGNAQ 126
Query: 58 VRVK 61
+K
Sbjct: 127 SPLK 130
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.319 0.134 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,037,752,581
Number of Sequences: 23463169
Number of extensions: 120000877
Number of successful extensions: 269227
Number of sequences better than 100.0: 187
Number of HSP's better than 100.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 268916
Number of HSP's gapped (non-prelim): 189
length of query: 186
length of database: 8,064,228,071
effective HSP length: 134
effective length of query: 52
effective length of database: 9,215,130,721
effective search space: 479186797492
effective search space used: 479186797492
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 72 (32.3 bits)