BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 029878
         (186 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2KT9|A Chain A, Solution Nmr Structure Of Probable 30s Ribosomal Protein
           Psrp-3 (Ycf65-Like Protein) From Synechocystis Sp.
           (Strain Pcc 6803), Northeast Structural Genomics
           Consortium Target Target Sgr46
          Length = 116

 Score = 96.3 bits (238), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 39/73 (53%), Positives = 59/73 (80%), Gaps = 1/73 (1%)

Query: 105 LVLKFIWMQNDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDSKPWISQTERIH 164
            +LK +W+  ++ IA+DQ++ G GT PL+ Y+FWPR DAW++LK  L++K WI++ +RI+
Sbjct: 10  FILKVLWLDQNVAIAVDQIV-GKGTSPLTSYFFWPRADAWQQLKDELEAKHWIAEADRIN 68

Query: 165 LLNQATDVINFWQ 177
           +LNQAT+VINFWQ
Sbjct: 69  VLNQATEVINFWQ 81


>pdb|3OXQ|E Chain E, Crystal Structure Of Ca2+CAM-Cav1.2 Pre-IqIQ DOMAIN
           COMPLEX
 pdb|3OXQ|F Chain F, Crystal Structure Of Ca2+CAM-Cav1.2 Pre-IqIQ DOMAIN
           COMPLEX
          Length = 78

 Score = 27.7 bits (60), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 3/51 (5%)

Query: 88  LRKEKLGVVVKPNEKRRLVLKFIWMQNDIGIALDQVIP--GHGTIPLSPYY 136
           LR +  G + + NE+ R ++K IW +  + + LDQV+P  G   + +  +Y
Sbjct: 11  LRIKTEGNLEQANEELRAIIKKIWKRTSMKL-LDQVVPPAGDDEVTVGKFY 60


>pdb|3G43|E Chain E, Crystal Structure Of The Calmodulin-Bound Cav1.2
           C-Terminal Regulatory Domain Dimer
 pdb|3G43|F Chain F, Crystal Structure Of The Calmodulin-Bound Cav1.2
           C-Terminal Regulatory Domain Dimer
          Length = 81

 Score = 27.7 bits (60), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 3/51 (5%)

Query: 88  LRKEKLGVVVKPNEKRRLVLKFIWMQNDIGIALDQVIP--GHGTIPLSPYY 136
           LR +  G + + NE+ R ++K IW +  + + LDQV+P  G   + +  +Y
Sbjct: 15  LRIKTEGNLEQANEELRAIIKKIWKRTSMKL-LDQVVPPAGDDEVTVGKFY 64


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.134    0.418 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,701,168
Number of Sequences: 62578
Number of extensions: 219500
Number of successful extensions: 531
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 529
Number of HSP's gapped (non-prelim): 3
length of query: 186
length of database: 14,973,337
effective HSP length: 93
effective length of query: 93
effective length of database: 9,153,583
effective search space: 851283219
effective search space used: 851283219
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)