BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029878
(186 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P82412|RRP3_SPIOL 30S ribosomal protein 3, chloroplastic OS=Spinacia oleracea
GN=PSRP3 PE=1 SV=1
Length = 179
Score = 178 bits (451), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 100/190 (52%), Positives = 121/190 (63%), Gaps = 20/190 (10%)
Query: 1 MLSMSFHCHINAVLTPDTSSATAKWPSQNLPLKPFTKTSVMLRPQ-------ISYLKLRH 53
MLSM+ +INA+ P + S L LKPF KT P+ S LK ++
Sbjct: 1 MLSMAVQPNINAIAKPSI------YQSPKLSLKPF-KTPAFANPKPFFSSPSFSQLKKKN 53
Query: 54 GTRQVRVKHSSSSAAIDQTLDPEPPADDSDCDIILRKEKLGVVVKPNEKRRLVLKFIWMQ 113
+ S AI D D D+++ KEKL V+VKP +K RLVLKFIWM+
Sbjct: 54 NWSLFVAPETISDVAIMGN------EVDIDDDLLVNKEKLKVLVKPMDKPRLVLKFIWME 107
Query: 114 NDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDSKPWISQTERIHLLNQATDVI 173
+IG+ALDQ IPGHGT+PLSPYYFWPRKDAWEELKVLL++KPWISQ + I LLNQATD+I
Sbjct: 108 KNIGLALDQTIPGHGTVPLSPYYFWPRKDAWEELKVLLENKPWISQKQMIILLNQATDII 167
Query: 174 NFWQTSGGNL 183
N WQ SGGNL
Sbjct: 168 NLWQQSGGNL 177
>sp|Q9LFV0|RRP32_ARATH 30S ribosomal protein 3-2, chloroplastic OS=Arabidopsis thaliana
GN=At5g15760 PE=2 SV=1
Length = 183
Score = 162 bits (409), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 90/170 (52%), Positives = 110/170 (64%), Gaps = 17/170 (10%)
Query: 26 PSQNLPLKPF------TKTSVMLRPQISYLKLRHGTRQVRVKHSSSSAAI------DQTL 73
PSQ L KP TK RP +S G Q+ +HS + I + T
Sbjct: 18 PSQKLSSKPIAHISLSTKLKPSSRPSLSCSTWNQG--QIPARHSCINPGIFAYPPSNLTF 75
Query: 74 DPEPPADDSDCDIILRKEKLGVVVKPNEKRRLVLKFIWMQNDIGIALDQVIPGHGTIPLS 133
E P +S L K+K+ V+VKP EK ++VLKF+WMQ DIG+ALD +IPG GTIPLS
Sbjct: 76 SHELPESESPP---LGKKKMRVLVKPLEKPKVVLKFVWMQKDIGVALDHMIPGFGTIPLS 132
Query: 134 PYYFWPRKDAWEELKVLLDSKPWISQTERIHLLNQATDVINFWQTSGGNL 183
PYYFWPRKDAWEELK LL+SKPWIS+ R+ LLNQATD+IN WQ+SGG+L
Sbjct: 133 PYYFWPRKDAWEELKTLLESKPWISELHRVFLLNQATDIINLWQSSGGDL 182
>sp|Q9SX22|RRP31_ARATH 30S ribosomal protein 3-1, chloroplastic OS=Arabidopsis thaliana
GN=At1g68590 PE=1 SV=1
Length = 166
Score = 150 bits (378), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 65/88 (73%), Positives = 77/88 (87%)
Query: 96 VVKPNEKRRLVLKFIWMQNDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDSKP 155
VVKP+EK R+VLKF+WM+ +IG+ LDQ +PGHGTIPLSPY+FWPRKDAWEELK L++KP
Sbjct: 76 VVKPDEKSRVVLKFVWMEKNIGLGLDQHVPGHGTIPLSPYFFWPRKDAWEELKSTLEAKP 135
Query: 156 WISQTERIHLLNQATDVINFWQTSGGNL 183
WISQ + I LLNQATD+IN WQ SGGNL
Sbjct: 136 WISQKKMIILLNQATDIINLWQQSGGNL 163
>sp|O48609|RRP3_HORVU 30S ribosomal protein 3, chloroplastic OS=Hordeum vulgare GN=PSRP3
PE=2 SV=1
Length = 181
Score = 140 bits (352), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 64/110 (58%), Positives = 80/110 (72%)
Query: 74 DPEPPADDSDCDIILRKEKLGVVVKPNEKRRLVLKFIWMQNDIGIALDQVIPGHGTIPLS 133
D EP + D + ++ E+ V V + LVLKFIWM+ +IGIALDQ++PG G+IPLS
Sbjct: 70 DDEPLGGEGDAEAVVESEEYKVEVPEKQDPMLVLKFIWMEKNIGIALDQMVPGVGSIPLS 129
Query: 134 PYYFWPRKDAWEELKVLLDSKPWISQTERIHLLNQATDVINFWQTSGGNL 183
PYYFWPRKDAWEEL+ L+ K WISQ + I LLNQATD+IN WQ GG+L
Sbjct: 130 PYYFWPRKDAWEELRAKLEEKEWISQKQMIILLNQATDIINLWQQGGGSL 179
>sp|P51351|RRP3_PORPU Probable 30S ribosomal protein 3, chloroplastic OS=Porphyra
purpurea GN=ycf65 PE=3 SV=1
Length = 99
Score = 107 bits (267), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 44/77 (57%), Positives = 62/77 (80%), Gaps = 1/77 (1%)
Query: 104 RLVLKFIWMQNDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDSKPWISQTERI 163
+ LK +W++N+I IA+DQ++ G+GT PL+ Y+FWPR DAWEELK L+SKPWI++ +RI
Sbjct: 3 KFTLKVLWLENNIAIAIDQIV-GNGTSPLTSYFFWPRNDAWEELKAELESKPWIAERDRI 61
Query: 164 HLLNQATDVINFWQTSG 180
LLN+ T+VIN+WQ G
Sbjct: 62 ELLNKTTEVINYWQEEG 78
>sp|Q1XDD6|RRP3_PORYE Probable 30S ribosomal protein 3, chloroplastic OS=Porphyra
yezoensis GN=ycf65 PE=3 SV=1
Length = 102
Score = 107 bits (266), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 44/77 (57%), Positives = 62/77 (80%), Gaps = 1/77 (1%)
Query: 104 RLVLKFIWMQNDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDSKPWISQTERI 163
+ LK +W++N+I IA+DQ++ G+GT PL+ Y+FWPR DAWEELK L+SKPWI++ +RI
Sbjct: 8 KFTLKVLWLENNIAIAIDQIV-GNGTSPLTSYFFWPRNDAWEELKAELESKPWIAERDRI 66
Query: 164 HLLNQATDVINFWQTSG 180
LLN+ T+VIN+WQ G
Sbjct: 67 ELLNKTTEVINYWQEEG 83
>sp|P59327|RRP3_THEEB Probable 30S ribosomal protein PSRP-3 OS=Thermosynechococcus
elongatus (strain BP-1) GN=tlr0301 PE=3 SV=1
Length = 108
Score = 103 bits (258), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 43/82 (52%), Positives = 60/82 (73%), Gaps = 1/82 (1%)
Query: 101 EKRRLVLKFIWMQNDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDSKPWISQT 160
E R L+ +W++ D+ IA+DQ++ G GT PL+ Y+FWPR DAWE LK L+ K WI++
Sbjct: 9 ELSRFTLRVLWLEKDVAIAVDQIV-GKGTSPLTSYFFWPRTDAWELLKAELEKKSWITEA 67
Query: 161 ERIHLLNQATDVINFWQTSGGN 182
ERI LLN+AT++IN+WQ G N
Sbjct: 68 ERIELLNRATEIINYWQEEGKN 89
>sp|Q5N172|RRP3_SYNP6 Probable 30S ribosomal protein PSRP-3 OS=Synechococcus sp. (strain
ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=syc1758_d PE=3
SV=1
Length = 112
Score = 103 bits (257), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 43/77 (55%), Positives = 58/77 (75%), Gaps = 1/77 (1%)
Query: 104 RLVLKFIWMQNDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDSKPWISQTERI 163
R +K +W+ ++ IA+DQV+ G T PL+ YYFWPR DAWE+LK L+SK WI++ ER+
Sbjct: 16 RFTIKILWLNENVAIAVDQVV-GKATSPLTAYYFWPRHDAWEQLKTELESKSWITEAERV 74
Query: 164 HLLNQATDVINFWQTSG 180
LLNQAT+VIN+WQ G
Sbjct: 75 ELLNQATEVINYWQEEG 91
>sp|O05161|RRP3_SYNE7 Probable 30S ribosomal protein PSRP-3 OS=Synechococcus elongatus
(strain PCC 7942) GN=mut3G PE=3 SV=1
Length = 112
Score = 103 bits (257), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 43/77 (55%), Positives = 58/77 (75%), Gaps = 1/77 (1%)
Query: 104 RLVLKFIWMQNDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDSKPWISQTERI 163
R +K +W+ ++ IA+DQV+ G T PL+ YYFWPR DAWE+LK L+SK WI++ ER+
Sbjct: 16 RFTIKILWLNENVAIAVDQVV-GKATSPLTAYYFWPRHDAWEQLKTELESKSWITEAERV 74
Query: 164 HLLNQATDVINFWQTSG 180
LLNQAT+VIN+WQ G
Sbjct: 75 ELLNQATEVINYWQEEG 91
>sp|B8HTT7|RRP3_CYAP4 Probable 30S ribosomal protein PSRP-3 OS=Cyanothece sp. (strain PCC
7425 / ATCC 29141) GN=Cyan7425_0465 PE=3 SV=1
Length = 109
Score = 101 bits (252), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 42/79 (53%), Positives = 61/79 (77%), Gaps = 1/79 (1%)
Query: 104 RLVLKFIWMQNDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDSKPWISQTERI 163
+ +LK +W+ +++ +A+DQV+ G GT PL+ Y+FWPR DAWE+LK L+ K WIS+ +RI
Sbjct: 13 QFILKVLWLDSNVALAVDQVV-GKGTSPLTSYFFWPRADAWEQLKTELEKKTWISEADRI 71
Query: 164 HLLNQATDVINFWQTSGGN 182
LLN+ATD+IN+WQ G N
Sbjct: 72 ALLNRATDIINYWQEEGRN 90
>sp|Q3M6B5|RRP3_ANAVT Probable 30S ribosomal protein PSRP-3 OS=Anabaena variabilis
(strain ATCC 29413 / PCC 7937) GN=Ava_3866 PE=3 SV=1
Length = 99
Score = 101 bits (251), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 43/79 (54%), Positives = 60/79 (75%), Gaps = 1/79 (1%)
Query: 104 RLVLKFIWMQNDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDSKPWISQTERI 163
+ +LK +W+ ++ +A+DQV+ G GT PL+ Y+FWPR DAWEELK L+SK WIS +R+
Sbjct: 3 KFILKILWLDENVALAVDQVV-GKGTSPLTKYFFWPRNDAWEELKKELESKHWISDLDRV 61
Query: 164 HLLNQATDVINFWQTSGGN 182
LLN+AT+VIN+WQ G N
Sbjct: 62 ELLNKATEVINYWQEEGRN 80
>sp|Q8YSC1|RRP3_NOSS1 Probable 30S ribosomal protein PSRP-3 OS=Nostoc sp. (strain PCC
7120 / UTEX 2576) GN=asr3168 PE=3 SV=2
Length = 99
Score = 101 bits (251), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 43/79 (54%), Positives = 60/79 (75%), Gaps = 1/79 (1%)
Query: 104 RLVLKFIWMQNDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDSKPWISQTERI 163
+ +LK +W+ ++ +A+DQV+ G GT PL+ Y+FWPR DAWEELK L+SK WIS +R+
Sbjct: 3 KFILKILWLDENVALAVDQVV-GKGTSPLTKYFFWPRNDAWEELKKELESKHWISDLDRV 61
Query: 164 HLLNQATDVINFWQTSGGN 182
LLN+AT+VIN+WQ G N
Sbjct: 62 ELLNKATEVINYWQEEGRN 80
>sp|Q7V048|RRP3_PROMP Probable 30S ribosomal protein PSRP-3 OS=Prochlorococcus marinus
subsp. pastoris (strain CCMP1986 / MED4) GN=PMM1440 PE=3
SV=2
Length = 126
Score = 100 bits (248), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 42/87 (48%), Positives = 65/87 (74%), Gaps = 2/87 (2%)
Query: 94 GVVVKPNEKRRLVLKFIWMQNDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDS 153
G KP+E R ++K +W+ +++ +A+DQ++ G G+ PL+ YYFWPR DAWE+LK L++
Sbjct: 21 GYTPKPDEGR-FIIKILWLPDNVALAVDQIV-GGGSSPLTAYYFWPRDDAWEKLKSELEN 78
Query: 154 KPWISQTERIHLLNQATDVINFWQTSG 180
K WI+ ER+ +LN+AT+VIN+WQ G
Sbjct: 79 KSWITDNERVEILNKATEVINYWQEEG 105
>sp|B2IUK8|RRP3_NOSP7 Probable 30S ribosomal protein PSRP-3 OS=Nostoc punctiforme (strain
ATCC 29133 / PCC 73102) GN=Npun_F4413 PE=3 SV=1
Length = 99
Score = 99.8 bits (247), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 41/79 (51%), Positives = 60/79 (75%), Gaps = 1/79 (1%)
Query: 104 RLVLKFIWMQNDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDSKPWISQTERI 163
+ +LK +W+ ++ +A+DQ++ G GT PL+ Y+FWPR DAWEELK L+SK WI+ +R+
Sbjct: 3 KFILKILWLDENVALAVDQIV-GKGTSPLTKYFFWPRNDAWEELKKELESKHWITDLDRV 61
Query: 164 HLLNQATDVINFWQTSGGN 182
LLN+AT+VIN+WQ G N
Sbjct: 62 ELLNKATEVINYWQEEGRN 80
>sp|B1WYT6|RRP3_CYAA5 Probable 30S ribosomal protein PSRP-3 OS=Cyanothece sp. (strain
ATCC 51142) GN=cce_1753 PE=3 SV=1
Length = 112
Score = 98.6 bits (244), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 42/74 (56%), Positives = 59/74 (79%), Gaps = 1/74 (1%)
Query: 104 RLVLKFIWMQNDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDSKPWISQTERI 163
R +LK +W+ ++ IA+DQV+ G GT PL+ Y+FWPR DAW+ELK L++K WI +TERI
Sbjct: 13 RFILKVLWLDANVAIAVDQVV-GKGTSPLTAYFFWPRNDAWQELKDELEAKHWILETERI 71
Query: 164 HLLNQATDVINFWQ 177
+LN+AT+VIN+WQ
Sbjct: 72 EILNKATEVINYWQ 85
>sp|Q7VA74|RRP3_PROMA Probable 30S ribosomal protein PSRP-3 OS=Prochlorococcus marinus
(strain SARG / CCMP1375 / SS120) GN=Pro_1593 PE=3 SV=1
Length = 126
Score = 98.6 bits (244), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 39/80 (48%), Positives = 61/80 (76%), Gaps = 1/80 (1%)
Query: 101 EKRRLVLKFIWMQNDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDSKPWISQT 160
++ R +LK +W+ +++ +A+DQ++ G GT PL+ Y+FWPR+DAWE LK L+ K WI+
Sbjct: 27 DEGRFLLKILWLPDNVALAVDQIV-GGGTSPLTAYFFWPREDAWETLKTELEDKAWITDN 85
Query: 161 ERIHLLNQATDVINFWQTSG 180
ER+ +LN+AT+VIN+WQ G
Sbjct: 86 ERVEVLNKATEVINYWQEEG 105
>sp|Q2JKV8|RRP3_SYNJB Probable 30S ribosomal protein PSRP-3 OS=Synechococcus sp. (strain
JA-2-3B'a(2-13)) GN=CYB_1711 PE=3 SV=1
Length = 99
Score = 98.6 bits (244), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 42/79 (53%), Positives = 61/79 (77%), Gaps = 1/79 (1%)
Query: 104 RLVLKFIWMQNDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDSKPWISQTERI 163
+ LK +W++ND+ IA+DQV+ + + PL+ Y+FWPR DAWE+LK L+SK WIS+ +RI
Sbjct: 3 KFALKALWLENDLAIAVDQVVAKNRS-PLTHYFFWPRDDAWEQLKAELESKTWISEVDRI 61
Query: 164 HLLNQATDVINFWQTSGGN 182
LLN+AT++IN+WQ G N
Sbjct: 62 ELLNRATELINYWQNGGRN 80
>sp|Q2JXD5|RRP3_SYNJA Probable 30S ribosomal protein PSRP-3 OS=Synechococcus sp. (strain
JA-3-3Ab) GN=CYA_0331 PE=3 SV=1
Length = 99
Score = 97.8 bits (242), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 42/77 (54%), Positives = 60/77 (77%), Gaps = 1/77 (1%)
Query: 104 RLVLKFIWMQNDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDSKPWISQTERI 163
+ LK +W++ND+ IA+DQV+ + + PL+ Y+FWPR DAWE+LK L+SK WIS+ +RI
Sbjct: 3 KFALKALWLENDLAIAVDQVVAKNRS-PLTRYFFWPRDDAWEQLKAELESKTWISEEDRI 61
Query: 164 HLLNQATDVINFWQTSG 180
LLNQAT++IN+WQ G
Sbjct: 62 TLLNQATELINYWQNGG 78
>sp|Q6B913|RRP3_GRATL Probable 30S ribosomal protein 3, chloroplastic OS=Gracilaria
tenuistipitata var. liui GN=ycf65 PE=3 SV=1
Length = 99
Score = 97.8 bits (242), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 40/79 (50%), Positives = 58/79 (73%), Gaps = 1/79 (1%)
Query: 104 RLVLKFIWMQNDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDSKPWISQTERI 163
+ K +W++N+I IA+D I G+ PL+ Y+FWPR DAWEELK+ L+SKPWI++ E++
Sbjct: 3 KFTFKILWLENNIAIAIDYNI-GNNKSPLTSYFFWPRNDAWEELKIELESKPWINKNEKV 61
Query: 164 HLLNQATDVINFWQTSGGN 182
LLN+ T++INFWQ N
Sbjct: 62 DLLNKTTEIINFWQEKEKN 80
>sp|Q9MUN2|RRP3_MESVI Probable 30S ribosomal protein 3, chloroplastic OS=Mesostigma
viride GN=ycf65 PE=3 SV=1
Length = 123
Score = 97.8 bits (242), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 47/93 (50%), Positives = 62/93 (66%), Gaps = 9/93 (9%)
Query: 93 LGVVVKPNE---KRR-----LVLKFIWMQNDIGIALDQVIPGHGTIPLSPYYFWPRKDAW 144
+ + +K N KRR VLKF+W++ ++ + +DQV G P++ Y+FWPRKDAW
Sbjct: 1 MNIFIKQNSSTVKRRYPLQKFVLKFLWLEKNLAVTVDQVT-NRGNSPITEYFFWPRKDAW 59
Query: 145 EELKVLLDSKPWISQTERIHLLNQATDVINFWQ 177
EELK L +KPWIS E I LLNQ TDVIN+WQ
Sbjct: 60 EELKDALANKPWISYDESIALLNQTTDVINYWQ 92
>sp|O78422|RRP3_GUITH Probable 30S ribosomal protein 3, chloroplastic OS=Guillardia theta
GN=ycf65 PE=3 SV=1
Length = 99
Score = 97.4 bits (241), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 40/74 (54%), Positives = 58/74 (78%), Gaps = 1/74 (1%)
Query: 104 RLVLKFIWMQNDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDSKPWISQTERI 163
+ LK +W+ N++ +A+DQ+I G+GT PL+ Y+FWPR DAWE++K L+SKPWI + ERI
Sbjct: 3 KFTLKVLWLDNNVAVAVDQII-GNGTSPLTCYFFWPRNDAWEQVKAELESKPWIEEKERI 61
Query: 164 HLLNQATDVINFWQ 177
LLN+ T++IN WQ
Sbjct: 62 ELLNKTTELINCWQ 75
>sp|B0CBD5|RRP3_ACAM1 Probable 30S ribosomal protein PSRP-3 OS=Acaryochloris marina
(strain MBIC 11017) GN=AM1_2922 PE=3 SV=1
Length = 99
Score = 97.4 bits (241), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 58/77 (75%), Gaps = 1/77 (1%)
Query: 104 RLVLKFIWMQNDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDSKPWISQTERI 163
+ +LK +W+ ++ +A+DQV+ G+G+ PL+ Y+FWPR DAWE LK L+ K WI + ERI
Sbjct: 3 KFILKVLWLDENVALAVDQVV-GNGSSPLTSYFFWPRNDAWENLKTELEKKTWIDEVERI 61
Query: 164 HLLNQATDVINFWQTSG 180
+LN+AT+VIN+WQ G
Sbjct: 62 SILNKATEVINYWQEEG 78
>sp|Q55385|RRP3_SYNY3 Probable 30S ribosomal protein PSRP-3 OS=Synechocystis sp. (strain
PCC 6803 / Kazusa) GN=slr0923 PE=1 SV=1
Length = 112
Score = 96.7 bits (239), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 39/73 (53%), Positives = 59/73 (80%), Gaps = 1/73 (1%)
Query: 105 LVLKFIWMQNDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDSKPWISQTERIH 164
+LK +W+ ++ IA+DQ++ G GT PL+ Y+FWPR DAW++LK L++K WI++ +RI+
Sbjct: 14 FILKVLWLDQNVAIAVDQIV-GKGTSPLTSYFFWPRADAWQQLKDELEAKHWIAEADRIN 72
Query: 165 LLNQATDVINFWQ 177
+LNQAT+VINFWQ
Sbjct: 73 VLNQATEVINFWQ 85
>sp|Q10YY1|RRP3_TRIEI Probable 30S ribosomal protein PSRP-3 OS=Trichodesmium erythraeum
(strain IMS101) GN=Tery_3451 PE=3 SV=1
Length = 99
Score = 95.5 bits (236), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 38/77 (49%), Positives = 61/77 (79%), Gaps = 1/77 (1%)
Query: 104 RLVLKFIWMQNDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDSKPWISQTERI 163
+ +LK +W+ +++ +A+DQV+ G+GT PL+ Y+FWPR DAWE+LK L+ K WIS+ +R+
Sbjct: 3 KFILKVVWLDDNVALAVDQVV-GNGTSPLTCYFFWPRNDAWEQLKKELEGKHWISEADRV 61
Query: 164 HLLNQATDVINFWQTSG 180
LLN+AT++I++WQ G
Sbjct: 62 ALLNKATEIISYWQEEG 78
>sp|Q9BAC5|RRP3_EUGGA Probable 30S ribosomal protein 3, chloroplastic OS=Euglena
granulata GN=ycf65 PE=3 SV=1
Length = 103
Score = 95.5 bits (236), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 39/82 (47%), Positives = 60/82 (73%), Gaps = 1/82 (1%)
Query: 102 KRRLVLKFIWMQNDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDSKPWISQTE 161
K+ L+LKF+W++ I + LDQ + G PL+ ++FWP+KDAWEE+K L+S+ WI+Q++
Sbjct: 2 KKELILKFLWLEKSIAVCLDQKV-GDSITPLTEFFFWPQKDAWEEMKNFLESQSWITQSD 60
Query: 162 RIHLLNQATDVINFWQTSGGNL 183
++LLN T+VINFWQ N+
Sbjct: 61 SVNLLNNITEVINFWQERDTNV 82
>sp|Q7V5U0|RRP3_PROMM Probable 30S ribosomal protein PSRP-3 OS=Prochlorococcus marinus
(strain MIT 9313) GN=PMT_1454 PE=3 SV=2
Length = 126
Score = 94.7 bits (234), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 38/80 (47%), Positives = 60/80 (75%), Gaps = 1/80 (1%)
Query: 101 EKRRLVLKFIWMQNDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDSKPWISQT 160
++ R +LK +W+ +++ +A+DQ++ G G PL+ Y+FWPR+DAWE LK L+ K WI+
Sbjct: 27 DEGRFLLKILWLPDNVALAVDQIV-GGGPSPLTAYFFWPREDAWETLKGELEGKSWITDN 85
Query: 161 ERIHLLNQATDVINFWQTSG 180
ER+ +LN+AT+VIN+WQ G
Sbjct: 86 ERVEVLNKATEVINYWQEEG 105
>sp|Q9BAB9|RRP3_EUGVI Probable 30S ribosomal protein 3, chloroplastic OS=Euglena viridis
GN=ycf65 PE=3 SV=1
Length = 101
Score = 87.8 bits (216), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 38/75 (50%), Positives = 55/75 (73%), Gaps = 1/75 (1%)
Query: 103 RRLVLKFIWMQNDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDSKPWISQTER 162
++ VLKF+W+Q + ++LDQ I G PL+ +YFWP+ DAWEE++ L+SK WI+ +E
Sbjct: 2 QKFVLKFLWLQRSVAVSLDQKI-GDNVSPLTEFYFWPQCDAWEEMRNFLESKSWINSSES 60
Query: 163 IHLLNQATDVINFWQ 177
I LLNQ T++IN WQ
Sbjct: 61 ILLLNQVTEIINDWQ 75
>sp|Q9BAC0|RRP3_EUGST Probable 30S ribosomal protein 3, chloroplastic OS=Euglena stellata
GN=ycf65 PE=3 SV=1
Length = 101
Score = 86.7 bits (213), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 36/73 (49%), Positives = 53/73 (72%), Gaps = 1/73 (1%)
Query: 105 LVLKFIWMQNDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDSKPWISQTERIH 164
+LKF+W++ + + LDQ I G T P++ ++FWP+ DAWEE+K L+ K WI Q+E +
Sbjct: 4 FILKFLWLEKSVAVGLDQKI-GDRTTPVTEFFFWPQHDAWEEMKNFLEDKSWIDQSEVVI 62
Query: 165 LLNQATDVINFWQ 177
LLNQ T+VIN+WQ
Sbjct: 63 LLNQITEVINYWQ 75
>sp|Q9BAC3|RRP3_EUGMU Probable 30S ribosomal protein 3, chloroplastic OS=Euglena
mutabilis GN=ycf65 PE=3 SV=1
Length = 101
Score = 80.9 bits (198), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 51/78 (65%)
Query: 103 RRLVLKFIWMQNDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDSKPWISQTER 162
R VLKF+ + I + LDQ I PL+ Y+FWP++DAWE++K +D+ WI +
Sbjct: 2 ERFVLKFLLIDKVIAVCLDQKISNERLNPLTEYFFWPQRDAWEDMKNFIDNNDWIDPKDA 61
Query: 163 IHLLNQATDVINFWQTSG 180
+++LN+ T+VINFW+ S
Sbjct: 62 VNILNRITEVINFWEESA 79
>sp|Q9TLZ0|RRP3_CYACA Probable 30S ribosomal protein 3, chloroplastic OS=Cyanidium
caldarium GN=ycf65 PE=3 SV=3
Length = 101
Score = 80.1 bits (196), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 55/73 (75%), Gaps = 1/73 (1%)
Query: 107 LKFIWMQNDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDSKPWISQTERIHLL 166
+K +W++N+I IA+D++I G P++ YYFWPR DAWE+LK+ LDS+P + +++ +L
Sbjct: 6 IKVLWLRNNIAIAVDRLI-GDSLFPMTYYYFWPRTDAWEQLKIELDSQPGLFAKDKVVIL 64
Query: 167 NQATDVINFWQTS 179
NQ T +I++WQ +
Sbjct: 65 NQVTRIIDYWQEN 77
>sp|Q9BAC2|RRP3_EUGMY Probable 30S ribosomal protein 3, chloroplastic OS=Euglena
myxocylindracea GN=ycf65 PE=3 SV=1
Length = 101
Score = 77.4 bits (189), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 52/74 (70%), Gaps = 1/74 (1%)
Query: 103 RRLVLKFIWMQNDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDSKPWISQTER 162
++ V K + ++N I I LDQ + T P++ Y+FWP+ DAW+EL LL+SKPWI+ + R
Sbjct: 2 QKFVWKVVCLENKIAICLDQQL-ADKTSPVTEYFFWPQSDAWDELNKLLESKPWITLSNR 60
Query: 163 IHLLNQATDVINFW 176
I +LN TD+IN+W
Sbjct: 61 IFVLNILTDLINYW 74
>sp|Q5QUZ5|NAGZ_IDILO Beta-hexosaminidase OS=Idiomarina loihiensis (strain ATCC BAA-735 /
DSM 15497 / L2-TR) GN=nagZ PE=3 SV=1
Length = 330
Score = 33.5 bits (75), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 3/88 (3%)
Query: 77 PPADDSDCDIILRKEKLGVVVKPNEKRRLVLKFIWMQNDIGIAL-DQVIPGHGTIPLSPY 135
P D DC ++ V P+E +L FI ++ G+A + PGHG++ +
Sbjct: 119 PVLDVDDCSDVIGDRAFSAV--PSEISKLASSFIEGMHEAGMACTGKHFPGHGSVQADSH 176
Query: 136 YFWPRKDAWEELKVLLDSKPWISQTERI 163
P D E D KP++S +++
Sbjct: 177 IAIPEDDRTLEQIRAHDLKPFLSLIQKL 204
>sp|P26949|CAF1A_YERPE F1 capsule-anchoring protein OS=Yersinia pestis GN=caf1A PE=1 SV=2
Length = 833
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Query: 91 EKLGVVVKPNEKRRLVLKFIWMQNDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEE 146
+ L KPN + + +N + L Q IPG GT+ S Y RK+ W +
Sbjct: 459 DTLNTYCKPNTRNDCRFDYAKPKNKVQFNLSQSIPGSGTLNFSGY----RKNYWRD 510
>sp|D4AL61|ACUK_ARTBC Transcription activator of gluconeogenesis ARB_05058 OS=Arthroderma
benhamiae (strain ATCC MYA-4681 / CBS 112371)
GN=ARB_05058 PE=3 SV=1
Length = 721
Score = 30.4 bits (67), Expect = 7.6, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 17 DTSSATAKWPSQNLPLKPFTKTSVMLRPQISYLKLRHGTRQVRVKHSSSSAAIDQTLDP 75
DT+++ A QN+P+ + V+ PQ+ L G+R+ +H ++S+ D DP
Sbjct: 371 DTTNSGAFNSRQNVPVSQQRQQPVVSTPQLKQQNLNLGSRR---RHKNASSIYDSVKDP 426
>sp|Q9Z5D9|BCHB_RHOS4 Light-independent protochlorophyllide reductase subunit B
OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 /
NCIB 8253 / DSM 158) GN=bchB PE=3 SV=1
Length = 534
Score = 30.4 bits (67), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 8 CHINAVLTPDTSSATAKWPSQNLPLKPFTKT 38
H N +L P+T + A+W + L +P+TKT
Sbjct: 205 AHFNVLLYPETGESAARWAEKTLK-QPYTKT 234
>sp|A3PL17|BCHB_RHOS1 Light-independent protochlorophyllide reductase subunit B
OS=Rhodobacter sphaeroides (strain ATCC 17029 / ATH
2.4.9) GN=bchB PE=3 SV=1
Length = 534
Score = 30.4 bits (67), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 8 CHINAVLTPDTSSATAKWPSQNLPLKPFTKT 38
H N +L P+T + A+W + L +P+TKT
Sbjct: 205 AHFNVLLYPETGESAARWAEKTLK-QPYTKT 234
>sp|D4D2Y6|ACUK_TRIVH Transcription activator of gluconeogenesis TRV_01442
OS=Trichophyton verrucosum (strain HKI 0517)
GN=TRV_01442 PE=3 SV=1
Length = 727
Score = 30.4 bits (67), Expect = 7.7, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 17 DTSSATAKWPSQNLPLKPFTKTSVMLRPQISYLKLRHGTRQVRVKHSSSSAAIDQTLDP 75
DT+++ A QN+P+ + V+ PQ+ L G+R+ +H ++S+ D DP
Sbjct: 371 DTTNSGAFNSRQNVPVSQQRQQPVVSTPQLKQQNLNLGSRR---RHKNASSIYDSVKDP 426
>sp|B9KK25|BCHB_RHOSK Light-independent protochlorophyllide reductase subunit B
OS=Rhodobacter sphaeroides (strain KD131 / KCTC 12085)
GN=bchB PE=3 SV=1
Length = 536
Score = 30.4 bits (67), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 8 CHINAVLTPDTSSATAKWPSQNLPLKPFTKT 38
H N +L P+T + A+W + L +P+TKT
Sbjct: 205 AHFNVLLYPETGESAARWAEKTLK-QPYTKT 234
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.134 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71,000,645
Number of Sequences: 539616
Number of extensions: 2806418
Number of successful extensions: 6083
Number of sequences better than 100.0: 43
Number of HSP's better than 100.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 6024
Number of HSP's gapped (non-prelim): 43
length of query: 186
length of database: 191,569,459
effective HSP length: 111
effective length of query: 75
effective length of database: 131,672,083
effective search space: 9875406225
effective search space used: 9875406225
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)