Query 029878
Match_columns 186
No_of_seqs 79 out of 81
Neff 2.7
Searched_HMMs 29240
Date Mon Mar 25 07:43:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029878.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029878hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2kt9_A Probable 30S ribosomal 100.0 1.5E-48 5.2E-53 304.3 8.7 77 101-178 6-82 (116)
2 1mdy_A Protein (MYOD BHLH doma 34.6 32 0.0011 23.7 3.0 37 141-178 28-64 (68)
3 2ql2_B Neurod1, neurogenic dif 32.1 44 0.0015 22.3 3.3 38 141-178 18-55 (60)
4 1wzd_A Heme oxygenase; electro 25.8 74 0.0025 25.0 4.1 42 133-175 158-203 (215)
5 1nlw_A MAD protein, MAX dimeri 23.9 54 0.0018 23.0 2.7 39 142-180 18-56 (80)
6 2lfh_A DNA-binding protein inh 21.3 77 0.0026 22.4 3.1 38 141-178 30-67 (68)
7 1nkp_A C-MYC, MYC proto-oncoge 21.3 59 0.002 23.0 2.5 39 142-180 23-61 (88)
8 2dh2_A 4F2 cell-surface antige 18.4 91 0.0031 26.7 3.5 42 114-180 94-135 (424)
9 3u5v_A Protein MAX, transcript 17.3 89 0.003 21.8 2.6 38 141-179 21-60 (76)
10 2cto_A Novel protein; high mob 15.8 31 0.0011 24.8 -0.0 21 129-150 12-32 (93)
No 1
>2kt9_A Probable 30S ribosomal protein PSRP-3; structural genomics, northeast structural genomics consortium (NESG), target SGR46, PSI-2; NMR {Synechocystis SP}
Probab=100.00 E-value=1.5e-48 Score=304.32 Aligned_cols=77 Identities=51% Similarity=1.120 Sum_probs=75.4
Q ss_pred CCceEEEEEEeecCcEEEEeeeeecCCCcccCcccccccCCchHHHHHhhhcCCCCCChhhHHHHhhhhHHHHHHHHh
Q 029878 101 EKRRLVLKFIWMQNDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDSKPWISQTERIHLLNQATDVINFWQT 178 (186)
Q Consensus 101 ~~~rfvLK~LWlek~IgiAvDQ~v~g~~t~PLT~YfFWPr~DAWEeLK~eLEsK~WIs~~e~i~lLNq~TeIINyWQe 178 (186)
-++||+||||||||||||||||+| |+|++|||+||||||+||||+||.+||+|+||+++|||+||||+||||||||+
T Consensus 6 ~m~rf~LKvlWlek~IaiAvDQ~v-g~~t~PLT~YfFWPr~DAWe~LK~eLEsK~WIse~e~i~lLN~~TeiIN~WQe 82 (116)
T 2kt9_A 6 VHTSFILKVLWLDQNVAIAVDQIV-GKGTSPLTSYFFWPRADAWQQLKDELEAKHWIAEADRINVLNQATEVINFWQD 82 (116)
T ss_dssp CCCCEEEEEEECSSCEEEEEEEEE-TTEEEECSCCEEETTSCHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhheeeEEEeccceeEEeeeee-cCCCCCCcceeeCCCccHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 358999999999999999999999 99999999999999999999999999999999999999999999999999998
No 2
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*
Probab=34.60 E-value=32 Score=23.68 Aligned_cols=37 Identities=27% Similarity=0.359 Sum_probs=29.6
Q ss_pred CchHHHHHhhhcCCCCCChhhHHHHhhhhHHHHHHHHh
Q 029878 141 KDAWEELKVLLDSKPWISQTERIHLLNQATDVINFWQT 178 (186)
Q Consensus 141 ~DAWEeLK~eLEsK~WIs~~e~i~lLNq~TeIINyWQe 178 (186)
+||.+.|+..+-.-+ =..-.+|++|-.|.+-|.+=|+
T Consensus 28 N~af~~LR~~iP~~~-~~KlSKi~tLr~Ai~YI~~L~~ 64 (68)
T 1mdy_A 28 NEAFETLKRSTSSNP-NQRLPKVEILRNAIRYIEGLQA 64 (68)
T ss_dssp HHHHHHHHTTSCSCT-TSCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCC-CCCCCHHHHHHHHHHHHHHHHH
Confidence 478899999887544 2345789999999999998876
No 3
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=32.13 E-value=44 Score=22.34 Aligned_cols=38 Identities=16% Similarity=0.162 Sum_probs=28.7
Q ss_pred CchHHHHHhhhcCCCCCChhhHHHHhhhhHHHHHHHHh
Q 029878 141 KDAWEELKVLLDSKPWISQTERIHLLNQATDVINFWQT 178 (186)
Q Consensus 141 ~DAWEeLK~eLEsK~WIs~~e~i~lLNq~TeIINyWQe 178 (186)
++|.+.|+..|-.-+==..-.+|++|-.|.+-|.+=|+
T Consensus 18 N~af~~LR~~lP~~~~~~klSKi~tLr~Ai~YI~~L~~ 55 (60)
T 2ql2_B 18 NAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSE 55 (60)
T ss_dssp HHHHHHHHHTSSSCCSSSCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCCcCcCCHHHHHHHHHHHHHHHHH
Confidence 47888999988543322245689999999999998776
No 4
>1wzd_A Heme oxygenase; electron-transfer, artificial metalloprotein; HET: YOK; 1.35A {Corynebacterium diphtheriae} SCOP: a.132.1.1 PDB: 1iw1_A* 1v8x_A* 1iw0_A* 1wzf_A* 1wzg_A* 2z68_A* 3i8r_A* 3moo_A* 1wnw_A* 1wnx_A* 1wnv_A*
Probab=25.82 E-value=74 Score=24.96 Aligned_cols=42 Identities=31% Similarity=0.424 Sum_probs=34.7
Q ss_pred cccccccC----CchHHHHHhhhcCCCCCChhhHHHHhhhhHHHHHH
Q 029878 133 SPYYFWPR----KDAWEELKVLLDSKPWISQTERIHLLNQATDVINF 175 (186)
Q Consensus 133 T~YfFWPr----~DAWEeLK~eLEsK~WIs~~e~i~lLNq~TeIINy 175 (186)
+.||-|+. .+-|...+..|+.-+| ++.++-.++..+..+..+
T Consensus 158 ~~f~~~~~~~~~~~~~~~fr~~Ld~~~~-~~~~~~~ii~eA~~aF~~ 203 (215)
T 1wzd_A 158 LGFYHFEGIAKLKVYKDEYREKLNNLEL-SDEQREHLLKEATDAFVF 203 (215)
T ss_dssp CGGGCCTTCSCHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHHHHHHH
T ss_pred ceeeecCCcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHHH
Confidence 47888888 3479999999999987 899999999888877654
No 5
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=23.87 E-value=54 Score=22.96 Aligned_cols=39 Identities=28% Similarity=0.212 Sum_probs=26.1
Q ss_pred chHHHHHhhhcCCCCCChhhHHHHhhhhHHHHHHHHhcC
Q 029878 142 DAWEELKVLLDSKPWISQTERIHLLNQATDVINFWQTSG 180 (186)
Q Consensus 142 DAWEeLK~eLEsK~WIs~~e~i~lLNq~TeIINyWQe~~ 180 (186)
+..+.|+..+-.-+=-....++.||..|++-|.+=|+..
T Consensus 18 ~~f~~Lr~~vP~~~~~~k~sk~~iL~kA~~yI~~L~~~~ 56 (80)
T 1nlw_A 18 LSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSD 56 (80)
T ss_dssp HHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 455677776632211123457999999999999888754
No 6
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=21.35 E-value=77 Score=22.35 Aligned_cols=38 Identities=21% Similarity=0.310 Sum_probs=28.4
Q ss_pred CchHHHHHhhhcCCCCCChhhHHHHhhhhHHHHHHHHh
Q 029878 141 KDAWEELKVLLDSKPWISQTERIHLLNQATDVINFWQT 178 (186)
Q Consensus 141 ~DAWEeLK~eLEsK~WIs~~e~i~lLNq~TeIINyWQe 178 (186)
+||.+.||..+-+-+==..-.+|++|--|.+-|.+=|+
T Consensus 30 N~aF~~LR~~VP~~p~~kKLSKiEtLr~Ai~YI~~Lq~ 67 (68)
T 2lfh_A 30 NHCYSRLRELVPGVPRGTQLSQVEILQRVIDYILDLQV 67 (68)
T ss_dssp HHHHHHHHHHCCCCCTTCCCCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHCCCCCCCCCccHHHHHHHHHHHHHHHHc
Confidence 57899999998665422234689999999998887664
No 7
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=21.31 E-value=59 Score=23.01 Aligned_cols=39 Identities=15% Similarity=0.109 Sum_probs=28.8
Q ss_pred chHHHHHhhhcCCCCCChhhHHHHhhhhHHHHHHHHhcC
Q 029878 142 DAWEELKVLLDSKPWISQTERIHLLNQATDVINFWQTSG 180 (186)
Q Consensus 142 DAWEeLK~eLEsK~WIs~~e~i~lLNq~TeIINyWQe~~ 180 (186)
|+.+.|+..+-+-+=-....++.||..|++-|.+=|+..
T Consensus 23 ~~f~~Lr~~vP~~~~~~K~sK~~iL~~A~~YI~~L~~~~ 61 (88)
T 1nkp_A 23 RSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEE 61 (88)
T ss_dssp HHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 556677777654332346799999999999999887653
No 8
>2dh2_A 4F2 cell-surface antigen heavy chain; TIM-barrel, glycosidase like, antiparallel beta-sheet, greek terminal domain, extracellular domain; 2.10A {Homo sapiens} PDB: 2dh3_A
Probab=18.36 E-value=91 Score=26.70 Aligned_cols=42 Identities=19% Similarity=0.393 Sum_probs=27.6
Q ss_pred CcEEEEeeeeecCCCcccCcccccccCCchHHHHHhhhcCCCCCChhhHHHHhhhhHHHHHHHHhcC
Q 029878 114 NDIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLDSKPWISQTERIHLLNQATDVINFWQTSG 180 (186)
Q Consensus 114 k~IgiAvDQ~v~g~~t~PLT~YfFWPr~DAWEeLK~eLEsK~WIs~~e~i~lLNq~TeIINyWQe~~ 180 (186)
+.|.|-+|-|+ +| ++ =.+|| + .+.=.+.+...++++||.+.|
T Consensus 94 ~Gi~vilD~V~-NH-~s-~~~wF--~--------------------~q~~~Vr~~~~~~~~~Wl~~g 135 (424)
T 2dh2_A 94 KSIRVILDLTP-NY-RG-ENSWF--S--------------------TQVDTVATKVKDALEFWLQAG 135 (424)
T ss_dssp TTCEEEEECCT-TT-TS-SSTTC--S--------------------SCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCEEEEEECC-Cc-CC-Ccccc--c--------------------ccCHHHHHHHHHHHHHHHHcC
Confidence 46899999998 66 44 23333 0 122355677789999999854
No 9
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*
Probab=17.31 E-value=89 Score=21.78 Aligned_cols=38 Identities=21% Similarity=0.271 Sum_probs=27.5
Q ss_pred CchHHHHHhhhcC-CCCCChh-hHHHHhhhhHHHHHHHHhc
Q 029878 141 KDAWEELKVLLDS-KPWISQT-ERIHLLNQATDVINFWQTS 179 (186)
Q Consensus 141 ~DAWEeLK~eLEs-K~WIs~~-e~i~lLNq~TeIINyWQe~ 179 (186)
++++++|+..+-. -+ -... -++.||..|.+-|.+=|+.
T Consensus 21 N~~f~~Lr~~vP~~~~-~~K~~sK~~IL~~AieYI~~Lq~~ 60 (76)
T 3u5v_A 21 NEAFRELGRMCQMHLK-SDKAQTKLLILQQAVQVILGLEQQ 60 (76)
T ss_dssp HHHHHHHHHHHHHHHC-CCCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCC-ccccccHHHHHHHHHHHHHHHHHH
Confidence 4788999988762 11 0122 4899999999999988874
No 10
>2cto_A Novel protein; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=15.80 E-value=31 Score=24.79 Aligned_cols=21 Identities=24% Similarity=0.488 Sum_probs=17.4
Q ss_pred cccCcccccccCCchHHHHHhh
Q 029878 129 TIPLSPYYFWPRKDAWEELKVL 150 (186)
Q Consensus 129 t~PLT~YfFWPr~DAWEeLK~e 150 (186)
--|++.||||= .|-++++|.+
T Consensus 12 KRP~sAf~lF~-~e~R~~ik~e 32 (93)
T 2cto_A 12 KASRNAYYFFV-QEKIPELRRR 32 (93)
T ss_dssp CSSCCHHHHHH-HTTHHHHHHH
T ss_pred CCCCCHHHHHH-HHHHHHHHHc
Confidence 34999999995 5789999887
Done!