BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029879
(186 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O88618|FTCD_RAT Formimidoyltransferase-cyclodeaminase OS=Rattus norvegicus GN=Ftcd
PE=1 SV=4
Length = 541
Score = 39.3 bits (90), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 52/114 (45%), Gaps = 19/114 (16%)
Query: 13 VPVFLY--AAAHPTGKPLDTIRRELGYYRPNSMGNQWAGWTMPEILPERPNEGPIQVSPA 70
VPV+LY AA P+ + L IR G Y + A W P+ GP P+
Sbjct: 121 VPVYLYGEAAQMPSRQTLPAIR--AGEYEALPEKLKQAEWV--------PDFGPSSFVPS 170
Query: 71 RGIAMIGARPWVALYNIPIMSTDVAATRRIARMVSARG------GGLPTVQTLG 118
G + GAR ++ +NI ++ST A RIA + +G G L VQ +G
Sbjct: 171 WGATVTGARKFLIAFNINLLSTKEQA-HRIALNLREQGRGKDQPGRLKKVQGIG 223
>sp|Q91XD4|FTCD_MOUSE Formimidoyltransferase-cyclodeaminase OS=Mus musculus GN=Ftcd PE=1
SV=1
Length = 541
Score = 39.3 bits (90), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 52/114 (45%), Gaps = 19/114 (16%)
Query: 13 VPVFLY--AAAHPTGKPLDTIRRELGYYRPNSMGNQWAGWTMPEILPERPNEGPIQVSPA 70
VPV+LY AA P+ + L IR G Y + A W P+ GP P+
Sbjct: 121 VPVYLYGEAAQTPSRQTLPAIR--AGEYEALPEKLKQAEWV--------PDFGPSSFVPS 170
Query: 71 RGIAMIGARPWVALYNIPIMSTDVAATRRIARMVSARG------GGLPTVQTLG 118
G + GAR ++ +NI ++ST A RIA + +G G L VQ +G
Sbjct: 171 WGATVTGARKFLIAFNINLLSTKEQA-HRIALNLREQGRGKDQPGRLKKVQGIG 223
>sp|Q54JL3|FTCD_DICDI Formimidoyltransferase-cyclodeaminase OS=Dictyostelium discoideum
GN=ftcd PE=3 SV=1
Length = 537
Score = 36.6 bits (83), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 44/98 (44%), Gaps = 9/98 (9%)
Query: 13 VPVFLYAAAHPTGKPLDTIRRELGYYRPNSMGNQWAGWTMPEILPERPNEGPIQVSPARG 72
VP+FLY A + R++L R G + +P+ GP + P+ G
Sbjct: 121 VPIFLYEEAST-----QSYRKQLKQIR---QGEYEGLEEKLKEEKWKPDFGPAKFIPSYG 172
Query: 73 IAMIGARPWVALYNIPIMSTDVAATRRIARMVSARGGG 110
++ GAR ++ YN+ I+ T A RIA V G G
Sbjct: 173 ASVTGARSFLIAYNVNILGTKEQA-HRIALNVREAGRG 209
>sp|O95954|FTCD_HUMAN Formimidoyltransferase-cyclodeaminase OS=Homo sapiens GN=FTCD PE=1
SV=2
Length = 541
Score = 35.4 bits (80), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 49/114 (42%), Gaps = 19/114 (16%)
Query: 13 VPVFLY--AAAHPTGKPLDTIRRELGYYRPNSMGNQWAGWTMPEILPERPNEGPIQVSPA 70
VPV+LY AA + + L IR G Y Q A W P+ GP P+
Sbjct: 121 VPVYLYGEAARMDSRRTLPAIR--AGEYEALPKKLQQADWA--------PDFGPSSFVPS 170
Query: 71 RGIAMIGARPWVALYNIPIMSTDVAATRRIARMVSARG------GGLPTVQTLG 118
G GAR ++ +NI ++ T A RIA + +G G L VQ +G
Sbjct: 171 WGATATGARKFLIAFNINLLGTKEQA-HRIALNLREQGRGKDQPGRLKKVQGIG 223
>sp|Q9YH58|FTCD_CHICK Formimidoyltransferase-cyclodeaminase OS=Gallus gallus GN=FTCD PE=2
SV=1
Length = 541
Score = 34.3 bits (77), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 57/131 (43%), Gaps = 20/131 (15%)
Query: 13 VPVFLY--AAAHPTGKPLDTIRRELGYYRPNSMGNQWAGWTMPEILPERPNEGPIQVSPA 70
VPV+LY AA + + L IR G Y + W P+ GP P
Sbjct: 121 VPVYLYGEAARQESRRTLPAIRA--GEYEALPKKLEKPEWV--------PDFGPPAFVPQ 170
Query: 71 RGIAMIGARPWVALYNIPIMSTDVAATRRIARMVSARG------GGLPTVQTLG-LVHGE 123
G + GAR ++ YNI ++ T A RIA + +G G L VQ +G + E
Sbjct: 171 WGATVTGARTFLIAYNINLLCTKELA-HRIALNIREQGRGADQPGSLKKVQGIGWYLEEE 229
Query: 124 DSTEIACMLLE 134
+ +++ LL+
Sbjct: 230 NIAQVSTNLLD 240
>sp|P53603|FTCD_PIG Formimidoyltransferase-cyclodeaminase OS=Sus scrofa GN=FTCD PE=1
SV=1
Length = 541
Score = 34.3 bits (77), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 50/114 (43%), Gaps = 19/114 (16%)
Query: 13 VPVFLYAAAHPTG--KPLDTIRRELGYYRPNSMGNQWAGWTMPEILPERPNEGPIQVSPA 70
VPV+LY A T + L +R G Y + A W P+ GP P+
Sbjct: 121 VPVYLYGEAARTAGRQSLPALR--AGEYEALPEKLKQAEWA--------PDFGPSAFVPS 170
Query: 71 RGIAMIGARPWVALYNIPIMSTDVAATRRIARMVSARG------GGLPTVQTLG 118
G + GAR ++ +NI ++ST A RIA + +G G L VQ +G
Sbjct: 171 WGATVAGARKFLLAFNINLLSTREQA-HRIALDLREQGRGKDQPGRLKKVQAIG 223
>sp|Q9FGR0|CPSF1_ARATH Cleavage and polyadenylation specificity factor subunit 1
OS=Arabidopsis thaliana GN=CPSF160 PE=1 SV=2
Length = 1442
Score = 33.9 bits (76), Expect = 0.64, Method: Composition-based stats.
Identities = 39/156 (25%), Positives = 63/156 (40%), Gaps = 17/156 (10%)
Query: 5 TFYFQCGAVPVFLYAAAHPTGKPLDTIRRELGYYRPNSMGNQWAGWTMPEILPERP---N 61
T+Y + P+ + ++P KPL+ + L G Q M +R
Sbjct: 1028 TYYAEKNLYPLIV---SYPVSKPLNQV---LSSLVDQEAGQQLDNHNMSSDDLQRTYTVE 1081
Query: 62 EGPIQV-SPARGIAMIGARPWVALYNIPIMSTDVAATRRIARMVSARGGGLPTVQTLG-- 118
E IQ+ P R PW IP+ +++ A T R+ +++A G T+ +G
Sbjct: 1082 EFEIQILEPERS-----GGPWETKAKIPMQTSEHALTVRVVTLLNASTGENETLLAVGTA 1136
Query: 119 LVHGEDSTEIACMLLEPNQVGADRVQNRVEKLAAEE 154
V GED +LL D QN V ++ + E
Sbjct: 1137 YVQGEDVAARGRVLLFSFGKNGDNSQNVVTEVYSRE 1172
>sp|B9KFM5|SECA_CAMLR Protein translocase subunit SecA OS=Campylobacter lari (strain
RM2100 / D67 / ATCC BAA-1060) GN=secA PE=3 SV=1
Length = 863
Score = 31.2 bits (69), Expect = 3.7, Method: Composition-based stats.
Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 11/79 (13%)
Query: 83 ALYNIPIMSTDVAATRRIARMVSARGG--GLPTVQTLGLVHGEDSTEIACMLLEPNQVGA 140
AL + I+ T+ +RRI + R G G P V L ++ I G
Sbjct: 516 ALGGLYIIGTERHESRRIDNQLRGRAGRQGDPGVSRFYLSLEDNLLRI---------FGG 566
Query: 141 DRVQNRVEKLAAEEGLDVE 159
DR++N +E+L EEG +E
Sbjct: 567 DRIKNIMERLGIEEGEHIE 585
>sp|A8LCM4|COAX_FRASN Type III pantothenate kinase OS=Frankia sp. (strain EAN1pec)
GN=coaX PE=3 SV=1
Length = 253
Score = 31.2 bits (69), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Query: 87 IPIMSTDVAATRRIARMVSARGGGLPTVQTLGLVHGEDSTEIACMLLEPNQVGADRVQN 145
+ + ST AA R I RMVS +PTV +V T + ++ P + GADR+ N
Sbjct: 55 VSVCSTVPAALREIRRMVSRTFPAMPTV----VVEPGTRTGVPILIDNPKEAGADRIMN 109
>sp|Q6IUF8|L_MACHU RNA-directed RNA polymerase L OS=Machupo virus GN=L PE=3 SV=1
Length = 2209
Score = 30.8 bits (68), Expect = 4.7, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 6/48 (12%)
Query: 100 IARMVSARGG------GLPTVQTLGLVHGEDSTEIACMLLEPNQVGAD 141
+ + VS GG G+P + +L L G+ S ++A ML+E N G++
Sbjct: 1994 VDQSVSGSGGNHMLLDGVPVIASLPLFTGQASFDLAAMLIESNLAGSN 2041
>sp|Q08188|TGM3_HUMAN Protein-glutamine gamma-glutamyltransferase E OS=Homo sapiens
GN=TGM3 PE=1 SV=4
Length = 693
Score = 30.4 bits (67), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 41/86 (47%), Gaps = 13/86 (15%)
Query: 23 PTGKPLDTIRREL--------GYYRPNSMGNQWAGWTMPEILPERPNEGPIQVSPARGIA 74
P G PLD + G++ + +G + GW + + P+ ++G Q PA +
Sbjct: 315 PMGNPLDKGSDSVWNFHVWNEGWFVRSDLGPSYGGWQVLDATPQERSQGVFQCGPA---S 371
Query: 75 MIGARPW-VAL-YNIPIMSTDVAATR 98
+IG R V L +++P + +V A R
Sbjct: 372 VIGVREGDVQLNFDMPFIFAEVNADR 397
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.136 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,979,992
Number of Sequences: 539616
Number of extensions: 3154736
Number of successful extensions: 8026
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 8021
Number of HSP's gapped (non-prelim): 24
length of query: 186
length of database: 191,569,459
effective HSP length: 111
effective length of query: 75
effective length of database: 131,672,083
effective search space: 9875406225
effective search space used: 9875406225
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)