Query 029879
Match_columns 186
No_of_seqs 108 out of 249
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 07:44:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029879.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029879hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1qd1_A Formiminotransferase-cy 100.0 2.7E-62 9.3E-67 433.0 15.1 156 6-172 113-277 (325)
2 1tt9_A Formimidoyltransferase- 100.0 2.4E-59 8.1E-64 437.2 16.4 157 6-173 114-279 (541)
3 1b4u_B LIGA, LIGB, protocatech 48.1 14 0.00049 31.3 3.6 67 93-161 99-190 (302)
4 1f60_B Elongation factor EEF1B 33.1 1.1E+02 0.0037 22.1 5.9 66 82-149 10-78 (94)
5 1b64_A Elongation factor 1-bet 32.5 99 0.0034 22.1 5.5 65 83-149 8-75 (91)
6 3kp1_A D-ornithine aminomutase 31.4 53 0.0018 32.1 4.9 69 81-156 478-546 (763)
7 2pw6_A Uncharacterized protein 31.3 37 0.0013 28.5 3.5 65 91-161 92-172 (271)
8 3txv_A Probable tagatose 6-pho 30.7 1.4E+02 0.0049 27.3 7.5 78 92-182 29-120 (450)
9 3dnj_A ATP-dependent CLP prote 27.2 1.1E+02 0.0037 21.6 4.9 47 132-183 11-71 (85)
10 2yy3_A Elongation factor 1-bet 25.5 1.6E+02 0.0056 21.0 5.6 51 99-150 23-77 (91)
11 2kxh_B Peptide of FAR upstream 24.6 52 0.0018 19.5 2.3 16 94-109 14-29 (31)
12 1u8s_A Glycine cleavage system 22.5 2.5E+02 0.0087 21.2 7.0 84 83-166 92-181 (192)
13 2ewo_A Putative agmatine deimi 22.1 1E+02 0.0035 27.3 4.8 125 13-157 60-205 (377)
14 1zpv_A ACT domain protein; str 21.0 1.8E+02 0.0062 18.9 5.1 73 85-160 6-79 (91)
15 4h3d_A 3-dehydroquinate dehydr 20.6 1E+02 0.0036 25.4 4.3 34 130-163 114-147 (258)
16 3o1f_A ATP-dependent CLP prote 20.2 1.8E+02 0.0063 20.2 4.9 47 132-183 7-67 (81)
17 2rpb_A Hypothetical membrane p 20.1 63 0.0021 22.5 2.5 28 141-168 83-110 (113)
No 1
>1qd1_A Formiminotransferase-cyclodeaminase; functional dimer, alpha-beta-BETA-alpha sandwich, electrosta charged substrate tunnel; HET: FON; 1.70A {Sus scrofa} SCOP: d.58.34.1 d.58.34.1
Probab=100.00 E-value=2.7e-62 Score=432.97 Aligned_cols=156 Identities=24% Similarity=0.340 Sum_probs=149.4
Q ss_pred hhhhhcCCcEEEeecc--CCCCCChHHHhhhcCccccCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCeEEeccCCCeE
Q 029879 6 FYFQCGAVPVFLYAAA--HPTGKPLDTIRRELGYYRPNSMGNQWAGWTMPEILPERPNEGPIQVSPARGIAMIGARPWVA 83 (186)
Q Consensus 6 ~~~~~l~vPVyLYg~A--~p~rr~La~iRr~lG~fe~~~~~~~~~g~~~~~~~~~~PD~GP~~~~p~~Gat~VGAr~~Li 83 (186)
.++++|+|||||||+| +|+|++|++||| ||||+++++ +++++|+|||||+++||++|+|+||||+|||
T Consensus 113 ~i~~~l~VPVyLYg~Aa~~p~rr~L~~iRr--G~yegl~e~--------~~~~~~~PD~Gp~~~~p~~Gat~vGAr~~li 182 (325)
T 1qd1_A 113 RLAEELGVPVYLYGEAARTAGRQSLPALRA--GEYEALPEK--------LKQAEWAPDFGPSAFVPSWGATVAGARKFLL 182 (325)
T ss_dssp HHHHHHTCCEEEEETTCSSGGGSCHHHHHT--THHHHHHHH--------TTSGGGCCSBSCCCCCTTTBCEEEEECSCCE
T ss_pred HHhhhcCCcEEeehhhcCCCccCcHHHhcc--cccccchhh--------ccCCCCCCCCCCCCCCCCcceEEEecCCcee
Confidence 5788999999999988 999999999999 899999875 6678999999999999999999999999999
Q ss_pred EeeeeecCCCHHHHHHHHHHhccCC------CCCCcceEEeeeec-CCeEEEEeecCCCCCCCHHHHHHHHHHHHHHcCC
Q 029879 84 LYNIPIMSTDVAATRRIARMVSARG------GGLPTVQTLGLVHG-EDSTEIACMLLEPNQVGADRVQNRVEKLAAEEGL 156 (186)
Q Consensus 84 ayNV~L~t~dl~~Ar~IA~~IR~~~------GGL~~VqAmgl~~~-~g~vqVS~Nl~d~~~tp~~~V~e~V~~~A~~~Gv 156 (186)
|||||| |+|+++||+||++||+++ |||++||||||+|+ +|++||||||+||++||+|+||++|+++|+++||
T Consensus 183 ayNVnL-t~~~~~A~~IA~~vR~~gr~~~~pGGL~~VqAmg~~~~e~~~~qVS~Nl~d~~~t~~~~V~e~V~~~A~~~Gv 261 (325)
T 1qd1_A 183 AFNINL-LSTREQAHRIALDLREQGRGKDQPGRLKKVQAIGWYLDEKNLAQVSTNLLDFEVTGLHTVFEETCREAQELSL 261 (325)
T ss_dssp EEEEEE-SSCHHHHHHHHHHHSTTC------CCSTTEEEEEEEETTTTEEEEEEEESCTTTSCHHHHHHHHHHHHHHTTC
T ss_pred eEeeec-cCcHHHHHHHHHHhhhcCCCCCCCCCccceEEeeEEecCCCeEEEEecccCCccCCHHHHHHHHHHHHHHcCC
Confidence 999999 777999999999999998 99999999999995 9999999999999999999999999999999999
Q ss_pred cccceeecCCChHHHH
Q 029879 157 DVEKGYFTDFSPEMIV 172 (186)
Q Consensus 157 ~V~~~yl~gf~p~~il 172 (186)
.|+++|++||+|.++|
T Consensus 262 ~V~gse~vGl~P~~al 277 (325)
T 1qd1_A 262 PVVGSQLVGLVPLKAL 277 (325)
T ss_dssp CEEEEEEESCBCHHHH
T ss_pred ceeceEEeCcchHHHH
Confidence 9999999999999864
No 2
>1tt9_A Formimidoyltransferase-cyclodeaminase (formiminotransferase- cyclodeaminase) (FTCD)...; hepatitis autoantigen, intermediate channeling; 3.42A {Rattus norvegicus} PDB: 2pfd_A
Probab=100.00 E-value=2.4e-59 Score=437.17 Aligned_cols=157 Identities=25% Similarity=0.343 Sum_probs=150.3
Q ss_pred hhhhhcCCcEEEeecc--CCCCCChHHHhhhcCccccCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCeEEeccCCCeE
Q 029879 6 FYFQCGAVPVFLYAAA--HPTGKPLDTIRRELGYYRPNSMGNQWAGWTMPEILPERPNEGPIQVSPARGIAMIGARPWVA 83 (186)
Q Consensus 6 ~~~~~l~vPVyLYg~A--~p~rr~La~iRr~lG~fe~~~~~~~~~g~~~~~~~~~~PD~GP~~~~p~~Gat~VGAr~~Li 83 (186)
.++++|+|||||||+| +|+|++|++||| ||||+++++ +++++|+|||||+++||++|+|+||||+|||
T Consensus 114 ~i~~~l~vPvylYg~Aa~~p~r~~L~~iRr--G~ye~~~~~--------~~~~~~~PD~Gp~~~~~~~G~t~vGAr~~li 183 (541)
T 1tt9_A 114 RLAEELNVPVYLYGEAAQMPSRQTLPAIRA--GEYEALPEK--------LKQAEWVPDFGPSSFVPSWGATVTGARKFLI 183 (541)
T ss_pred HHhhhcCCcEEeeHhhcCCCCcCcHHHhhc--cccccchhh--------ccCCCCCCCCCCCCCCCCCceEEEecCccee
Confidence 5788999999999988 999999999999 899999986 6778999999999999999999999999999
Q ss_pred EeeeeecCCCHHHHHHHHHHhccCC------CCCCcceEEeeeec-CCeEEEEeecCCCCCCCHHHHHHHHHHHHHHcCC
Q 029879 84 LYNIPIMSTDVAATRRIARMVSARG------GGLPTVQTLGLVHG-EDSTEIACMLLEPNQVGADRVQNRVEKLAAEEGL 156 (186)
Q Consensus 84 ayNV~L~t~dl~~Ar~IA~~IR~~~------GGL~~VqAmgl~~~-~g~vqVS~Nl~d~~~tp~~~V~e~V~~~A~~~Gv 156 (186)
|||||| |+|+++||+||+.||+++ |||++||||||+|+ +|++||||||+||++||+|+||++|+++|+++||
T Consensus 184 ayNV~L-t~~~~~a~~IA~~vr~~gr~~~~~Ggl~~Vqamg~~~~~~~~~qVs~Nl~d~~~t~~~~v~e~v~~~A~~~gv 262 (541)
T 1tt9_A 184 AFNINL-LSTKEQAHRIALNLREQGRGKDQPGRLKKVQGIGWYLEEKNLAQVSTNLLDFEVTALHTVYEEARREAQELNL 262 (541)
T ss_pred eeeeec-cccHHHHHHHHHHhhhcCCCCCCCCCccceeEeeEeecCCCeEEEEecccCCccCCHHHHHHHHHHHHHHcCC
Confidence 999999 889999999999999998 99999999999995 9999999999999999999999999999999999
Q ss_pred cccceeecCCChHHHHH
Q 029879 157 DVEKGYFTDFSPEMIVE 173 (186)
Q Consensus 157 ~V~~~yl~gf~p~~ile 173 (186)
.|++++++||+|.+.|-
T Consensus 263 ~v~gse~vGl~P~~al~ 279 (541)
T 1tt9_A 263 PVVGSQLVGLVPLKALL 279 (541)
T ss_pred ccccceEeccchHHHHH
Confidence 99999999999997553
No 3
>1b4u_B LIGA, LIGB, protocatechuate 4,5-dioxygenase; extradiol type dioxygenase, non-heme iron protein; HET: DHB; 2.20A {Sphingomonas paucimobilis} SCOP: c.56.6.1 PDB: 1bou_B
Probab=48.12 E-value=14 Score=31.32 Aligned_cols=67 Identities=10% Similarity=0.100 Sum_probs=44.0
Q ss_pred CHHHHHHHHHHhccCCCCCCcc--eEEeeeec------------CC----eEEEEeecCCCCCCCHHHHHHHHHHHH---
Q 029879 93 DVAATRRIARMVSARGGGLPTV--QTLGLVHG------------ED----STEIACMLLEPNQVGADRVQNRVEKLA--- 151 (186)
Q Consensus 93 dl~~Ar~IA~~IR~~~GGL~~V--qAmgl~~~------------~g----~vqVS~Nl~d~~~tp~~~V~e~V~~~A--- 151 (186)
|-++|++|++.+... |+... ..+++.|+ ++ +||||+|...+-.-++.+.++.=+.++
T Consensus 99 ~peLA~~i~~~l~~~--g~~~~~~~~~~lDHG~~vpL~~l~p~~d~~~ipVVpisv~~~~~p~~~~~~~~~lG~aL~~~~ 176 (302)
T 1b4u_B 99 HPDLAWHIAQSLILD--EFDMTIMNQMDVDHGCTVPLSMIFGEPEEWPCKVIPFPVNVVTYPPPSGKRCFALGDSIRAAV 176 (302)
T ss_dssp CHHHHHHHHHHHHHT--TCCCEEESSCCBCHHHHHHHHHHHCSCSSCSSEEEEEEBCCSSSCCCCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhc--CCCeeccCCcCCCceeeehHHHhcCcccCCcCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHH
Confidence 589999999998764 33322 23666653 12 699999988765556666665555544
Q ss_pred H----HcCCcccce
Q 029879 152 A----EEGLDVEKG 161 (186)
Q Consensus 152 ~----~~Gv~V~~~ 161 (186)
+ +.+|-|++|
T Consensus 177 ~~~~~d~~VlIIgS 190 (302)
T 1b4u_B 177 ESFPEDLNVHVWGT 190 (302)
T ss_dssp HTSSSCCEEEEEEE
T ss_pred HhcCCCCCEEEEEe
Confidence 2 456877775
No 4
>1f60_B Elongation factor EEF1BA; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: d.58.12.1 PDB: 1g7c_B* 2b7c_B 2b7b_B 1ije_B* 1ijf_B*
Probab=33.06 E-value=1.1e+02 Score=22.06 Aligned_cols=66 Identities=17% Similarity=0.221 Sum_probs=42.3
Q ss_pred eEEeeeeecCCCHHHHHHHHHHhccC-CCCCCcceEEeeeecCCe--EEEEeecCCCCCCCHHHHHHHHHH
Q 029879 82 VALYNIPIMSTDVAATRRIARMVSAR-GGGLPTVQTLGLVHGEDS--TEIACMLLEPNQVGADRVQNRVEK 149 (186)
Q Consensus 82 LiayNV~L~t~dl~~Ar~IA~~IR~~-~GGL~~VqAmgl~~~~g~--vqVS~Nl~d~~~tp~~~V~e~V~~ 149 (186)
++-+.|--..++..+ .++...||+. ..||..=..--.|.++|+ .||.|=+.| +..+.+.+++.++.
T Consensus 10 ~v~l~VkP~d~etDl-~~L~~~Vr~i~~~Gl~wg~~k~~piafGlkkL~i~~vveD-d~~~tD~lee~i~~ 78 (94)
T 1f60_B 10 IVTLDVKPWDDETNL-EEMVANVKAIEMEGLTWGAHQFIPIGFGIKKLQINCVVED-DKVSLDDLQQSIEE 78 (94)
T ss_dssp EEEEEEEESSTTSCH-HHHHHHHHTCCCTTEEEEEEEEEEEETTEEEEEEEEEEET-TTCCHHHHHHHHHT
T ss_pred EEEEEEccCCCCcCH-HHHHHHHHHhCcCCcEEEEEEEEEEeeeeEEEEEEEEEEC-CccChHHHHHHHHh
Confidence 344455444433333 3477888875 566664333333345554 799998888 78999999999864
No 5
>1b64_A Elongation factor 1-beta; guanine nucleotide exchange factor, G-protein, translation elongation; NMR {Homo sapiens} SCOP: d.58.12.1
Probab=32.54 E-value=99 Score=22.11 Aligned_cols=65 Identities=15% Similarity=0.296 Sum_probs=40.9
Q ss_pred EEeeeeecCCCHHHHHHHHHHhccC-CCCCCcceEEeeeecCC--eEEEEeecCCCCCCCHHHHHHHHHH
Q 029879 83 ALYNIPIMSTDVAATRRIARMVSAR-GGGLPTVQTLGLVHGED--STEIACMLLEPNQVGADRVQNRVEK 149 (186)
Q Consensus 83 iayNV~L~t~dl~~Ar~IA~~IR~~-~GGL~~VqAmgl~~~~g--~vqVS~Nl~d~~~tp~~~V~e~V~~ 149 (186)
+-+.|--..++..+ .++.+.||+. ..||..=..--.|.++| ..|+.|=+.| +..+.+.+++.++.
T Consensus 8 vvl~VkP~d~etDl-~~L~~~Vr~i~~~Gl~wg~~k~~piafGikkL~i~~vveD-d~v~tD~lee~i~~ 75 (91)
T 1b64_A 8 ILLDVKPWDDETDM-AKLEECVRSIQADGLVWGSSKLVPVGYGIKKLQIQCVVED-DKVGTDMLEEQITA 75 (91)
T ss_dssp EEEEEEESSTTSCH-HHHHHHHHHCCCTTCEEEEEEEEESSSSCEEEEEEEEECT-TSSCHHHHHHHHTT
T ss_pred EEEEEccCCCCcCH-HHHHHHHHHhCcCCcEEEEEEEEEEEeeEEEEEEEEEEEC-CccChHHHHHHHHh
Confidence 33444444433222 3466777765 56666544333444555 4899998888 88999999999753
No 6
>3kp1_A D-ornithine aminomutase E component; 5 aminomutase (OAM), metal binding protein; HET: PLP B12 5AD; 2.01A {Clostridium sticklandii} PDB: 3kow_A* 3koy_A* 3koz_A* 3kp0_A* 3kox_A*
Probab=31.38 E-value=53 Score=32.07 Aligned_cols=69 Identities=10% Similarity=0.067 Sum_probs=50.4
Q ss_pred CeEEeeeeecCCCHHHHHHHHHHhccCCCCCCcceEEeeeecCCeEEEEeecCCCCCCCHHHHHHHHHHHHHHcCC
Q 029879 81 WVALYNIPIMSTDVAATRRIARMVSARGGGLPTVQTLGLVHGEDSTEIACMLLEPNQVGADRVQNRVEKLAAEEGL 156 (186)
Q Consensus 81 ~LiayNV~L~t~dl~~Ar~IA~~IR~~~GGL~~VqAmgl~~~~g~vqVS~Nl~d~~~tp~~~V~e~V~~~A~~~Gv 156 (186)
==|.|==.|+.+| .+.+|+++.-..+.+.+ ||--|=...+|+||+|+.|-- |..+..++-+++|++.|+
T Consensus 478 ~ki~~ideld~~d-~v~~r~~~~~~~~~~~~--ikPygd~~~DG~VqlsftLPv----~~~~Ae~AA~qla~kMGl 546 (763)
T 3kp1_A 478 EKIVYIDELDEND-NVNVRMEETKEFRHSSM--IKPEVEWQADGTVLLTMFLPT----SKRVAEFAAIEFAKKMNL 546 (763)
T ss_dssp GGCCCCCCSCSSS-SHHHHHHHTGGGC--CE--ECCCSSSTTCCEEEEEEEESS----CHHHHHHHHHHHHHHTTC
T ss_pred cceeeecccCccc-cHHHHHHHHHHHhccCc--cCCcccccCCceEEEEEeccC----ChHHHHHHHHHHHHHcCC
Confidence 3466666777777 67788888777666643 554444445999999998854 358899999999999997
No 7
>2pw6_A Uncharacterized protein YGID; JW3007, escherichia coli structural genomics, protein structure, riken and PSI, protein structu initiative; 2.27A {Escherichia coli} SCOP: c.56.6.1
Probab=31.29 E-value=37 Score=28.45 Aligned_cols=65 Identities=15% Similarity=0.162 Sum_probs=42.3
Q ss_pred CCCHHHHHHHHHHhccCCCCCCcc-eEEeeeec-------------CCeEEEEeecCCCCCCCHHHHHHHHHHH--HHHc
Q 029879 91 STDVAATRRIARMVSARGGGLPTV-QTLGLVHG-------------EDSTEIACMLLEPNQVGADRVQNRVEKL--AAEE 154 (186)
Q Consensus 91 t~dl~~Ar~IA~~IR~~~GGL~~V-qAmgl~~~-------------~g~vqVS~Nl~d~~~tp~~~V~e~V~~~--A~~~ 154 (186)
..|.++|++|++.+++. |+.-. ..++|.|+ --.||||+|... ++.+.++.=+.+ +.+.
T Consensus 92 ~g~peLA~~i~~~l~~~--g~~~~~~~~glDHG~~vPL~~m~p~adiPVVqlSi~~~~----~p~~~~~lG~aL~~lrd~ 165 (271)
T 2pw6_A 92 PGSPALAQRLVELLAPI--PVTLDKEAWGFDHGSWGVLIKMYPDADIPMVQLSIDSSK----PAAWHFEMGRKLAALRDE 165 (271)
T ss_dssp CBCHHHHHHHHHHHTTS--CEEEESSCCCCCHHHHHHHHHHSTTCCSCEEEEEEETTS----CHHHHHHHHHHHGGGGGG
T ss_pred CCCHHHHHHHHHHHHhc--CCcccccccCCCcchhhhHHHhcCCCCCCEEEEeCCCCC----CHHHHHHHHHHHHHHHHc
Confidence 35899999999999874 34322 45666653 137999999543 345555443333 3457
Q ss_pred CCcccce
Q 029879 155 GLDVEKG 161 (186)
Q Consensus 155 Gv~V~~~ 161 (186)
||-|++|
T Consensus 166 ~VlIigS 172 (271)
T 2pw6_A 166 GIMLVAS 172 (271)
T ss_dssp TEEEEEE
T ss_pred CcEEEEe
Confidence 8888876
No 8
>3txv_A Probable tagatose 6-phosphate kinase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.80A {Sinorhizobium meliloti}
Probab=30.69 E-value=1.4e+02 Score=27.25 Aligned_cols=78 Identities=10% Similarity=0.050 Sum_probs=53.4
Q ss_pred CCHHHHHHHHHHhccCCCCCCcceEEeeeecCCeEEEEeecCCC--CCCC--HHHHHHHHHHHHHHcCCcc---c--cee
Q 029879 92 TDVAATRRIARMVSARGGGLPTVQTLGLVHGEDSTEIACMLLEP--NQVG--ADRVQNRVEKLAAEEGLDV---E--KGY 162 (186)
Q Consensus 92 ~dl~~Ar~IA~~IR~~~GGL~~VqAmgl~~~~g~vqVS~Nl~d~--~~tp--~~~V~e~V~~~A~~~Gv~V---~--~~y 162 (186)
.+++..+.|-++-.+. .-| =++|+|+|-.|+ .+|+ +..+...|+.+|.+.|++| . +-.
T Consensus 29 ~n~e~i~Ail~aAee~----------~sP---VIIe~t~~qv~~~gGYtG~~p~~f~~~V~~~A~~~~vPv~pV~LhlDH 95 (450)
T 3txv_A 29 AHPLVIEAAMLRAHRE----------KAP---VLIEATCNQVNQDGGYTGMTPEDFTRFVGAIADRIEFPREKILLGGDH 95 (450)
T ss_dssp CCHHHHHHHHHHHHHS----------CSC---EEEEEETTTSCTTCTTTTCCHHHHHHHHHHHHHHTTCCGGGEEEEEEE
T ss_pred CCHHHHHHHHHHHHHh----------CCC---EEEEcChhhHhhcCCCCCCCHHHHHHHHHHHHHHcCcCcccEEEECCC
Confidence 5778888776665542 112 258999998886 3555 5889999999999999996 2 112
Q ss_pred e-----cCCChHHHHHHHHHHHHhh
Q 029879 163 F-----TDFSPEMIVEKYMNLINAT 182 (186)
Q Consensus 163 l-----~gf~p~~ile~~~~~~~~~ 182 (186)
. .++++++.+++..+.+...
T Consensus 96 g~~~~w~~~~~~~am~~a~e~i~~a 120 (450)
T 3txv_A 96 LGPNPWKHLPADEAMAKAEAMITAY 120 (450)
T ss_dssp ESSGGGTTSCHHHHHHHHHHHHHHH
T ss_pred CCCcccccccHHHHHHHHHHHHHHH
Confidence 2 2467777777777665543
No 9
>3dnj_A ATP-dependent CLP protease adapter protein CLPS; adaptor, protein-peptide complex, peptide binding protein; 1.15A {Caulobacter vibrioides} SCOP: d.45.1.2 PDB: 3g19_A 3gq0_A 3gq1_A 3gw1_A 3g1b_A 3g3p_A*
Probab=27.24 E-value=1.1e+02 Score=21.65 Aligned_cols=47 Identities=17% Similarity=0.196 Sum_probs=33.3
Q ss_pred cCCCCCCCHHHHHHHHHH--------------HHHHcCCcccceeecCCChHHHHHHHHHHHHhhh
Q 029879 132 LLEPNQVGADRVQNRVEK--------------LAAEEGLDVEKGYFTDFSPEMIVEKYMNLINATA 183 (186)
Q Consensus 132 l~d~~~tp~~~V~e~V~~--------------~A~~~Gv~V~~~yl~gf~p~~ile~~~~~~~~~~ 183 (186)
|.|-+.||..-|.+.+++ .+...|..|++.| +.++.|.+...+...|
T Consensus 11 l~NDd~~tme~Vv~vL~~vf~~~~e~A~~iml~VH~~G~avv~~~-----~~e~AE~k~~q~~~~a 71 (85)
T 3dnj_A 11 ILNDDYTPMEFVVYVLERFFNKSREDATRIMLHVHQNGVGVCGVY-----TYEVAETKVAQVIDSA 71 (85)
T ss_dssp EECCSSSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHSEEEEEEE-----CHHHHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCcEEEEEe-----cHHHHHHHHHHHHHHH
Confidence 467789999888887766 4555666666665 6678888887765544
No 10
>2yy3_A Elongation factor 1-beta; structural genomics, NPPSFA, national Pro protein structural and functional analyses; 2.50A {Pyrococcus horikoshii}
Probab=25.50 E-value=1.6e+02 Score=20.97 Aligned_cols=51 Identities=6% Similarity=-0.012 Sum_probs=34.3
Q ss_pred HHHHHhccC-CCCCCcceEEeeeecCC--eEEEEeecCCCCCC-CHHHHHHHHHHH
Q 029879 99 RIARMVSAR-GGGLPTVQTLGLVHGED--STEIACMLLEPNQV-GADRVQNRVEKL 150 (186)
Q Consensus 99 ~IA~~IR~~-~GGL~~VqAmgl~~~~g--~vqVS~Nl~d~~~t-p~~~V~e~V~~~ 150 (186)
++..+||.. ..||..=+.--.|...| ..|+.|=+.| +.. +...+++.++..
T Consensus 23 ~L~~~vk~~~~~gl~w~~~k~~pIafGlk~L~i~~vveD-~~~~~tD~lee~i~~~ 77 (91)
T 2yy3_A 23 ELEEKLKKVIPEKYGLAKVEREPIAFGLVALKFYVLGRD-EEGYSFDEVAEKFEEV 77 (91)
T ss_dssp HHHHHHHHHSCTTCEEEEEEEEECTTSCEEEEEEEEECS-STTCCHHHHHHHHHHS
T ss_pred HHHHHHHHhccCCcEEeeeeEEEEEcceeeEEEEEEEEC-CCccccHHHHHHHhcC
Confidence 355666654 56666444333344555 4789998888 677 999999998765
No 11
>2kxh_B Peptide of FAR upstream element-binding protein 1; RRM, FIR, FBP, protein-protein complex, protein binding; NMR {Homo sapiens}
Probab=24.64 E-value=52 Score=19.51 Aligned_cols=16 Identities=25% Similarity=0.480 Sum_probs=13.2
Q ss_pred HHHHHHHHHHhccCCC
Q 029879 94 VAATRRIARMVSARGG 109 (186)
Q Consensus 94 l~~Ar~IA~~IR~~~G 109 (186)
+..||+||..|.+-++
T Consensus 14 ~~RaRQIaAKig~~~~ 29 (31)
T 2kxh_B 14 LQRARQIAAKIGGDAG 29 (31)
T ss_dssp HHHHHHHHHHTTCCCS
T ss_pred HHHHHHHHHHhcCCCC
Confidence 7899999999987544
No 12
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=22.45 E-value=2.5e+02 Score=21.17 Aligned_cols=84 Identities=11% Similarity=0.160 Sum_probs=56.2
Q ss_pred EEeeeeecCCC-HHHHHHHHHHhccCCCCCCcceEEeee-----ecCCeEEEEeecCCCCCCCHHHHHHHHHHHHHHcCC
Q 029879 83 ALYNIPIMSTD-VAATRRIARMVSARGGGLPTVQTLGLV-----HGEDSTEIACMLLEPNQVGADRVQNRVEKLAAEEGL 156 (186)
Q Consensus 83 iayNV~L~t~d-l~~Ar~IA~~IR~~~GGL~~VqAmgl~-----~~~g~vqVS~Nl~d~~~tp~~~V~e~V~~~A~~~Gv 156 (186)
..|-|.+...| .-+-.+|+..+.+.++-+-.++..... .+.+..-+.+-+.-+.......+.+....+|.++|+
T Consensus 92 ~~~~l~v~~~D~~Gil~~v~~~l~~~~~nI~~~~~~t~~~~~~~~~~~~F~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 171 (192)
T 1u8s_A 92 YTVEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQTISKDKLHSEQNQFHIAISARVDSGCNLMQLQEEFDALCTALDV 171 (192)
T ss_dssp EEEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEEEC--------CEEEEEEEEEECTTSCHHHHHHHHHHHHHHHTC
T ss_pred ceEEEEEEeCCCccHHHHHHHHHHHcCCcHHHhhhhcccCCccCCCCCEEEEEEEEeCCCCCCHHHHHHHHHHHHHHhCc
Confidence 34556665555 457788999999999988888777554 134554444443333466789999999999999998
Q ss_pred cccceeecCC
Q 029879 157 DVEKGYFTDF 166 (186)
Q Consensus 157 ~V~~~yl~gf 166 (186)
.+.=....-|
T Consensus 172 ~~~~~~~~~~ 181 (192)
T 1u8s_A 172 QGSLNFIKNS 181 (192)
T ss_dssp EEEEEEEEC-
T ss_pred eEEEEEcccc
Confidence 7654433333
No 13
>2ewo_A Putative agmatine deiminase; Q8DW17, SMR6, X-RAY, structural genomics, PSI, protein structure initiative; 2.90A {Streptococcus mutans} SCOP: d.126.1.6
Probab=22.08 E-value=1e+02 Score=27.26 Aligned_cols=125 Identities=15% Similarity=0.168 Sum_probs=64.4
Q ss_pred CcEEEeeccCCCCCChHHHhhhcCccccCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCeEEeccCCCeEEeeeee---
Q 029879 13 VPVFLYAAAHPTGKPLDTIRRELGYYRPNSMGNQWAGWTMPEILPERPNEGPIQVSPARGIAMIGARPWVALYNIPI--- 89 (186)
Q Consensus 13 vPVyLYg~A~p~rr~La~iRr~lG~fe~~~~~~~~~g~~~~~~~~~~PD~GP~~~~p~~Gat~VGAr~~LiayNV~L--- 89 (186)
-||++.-.. + ..+..|+.|+.+. . .+.++. .+..+.-|.=|+||.-+....| ...++.|+.|-
T Consensus 60 e~V~~~v~~--~--~~~~a~~~l~~~~-~-~~V~~~--~~~~dD~W~RD~Gp~~v~~~~g------~~~~vdf~FN~WG~ 125 (377)
T 2ewo_A 60 EPVSLCVPP--L--QYENALARVSELG-S-HNIRII--EMTNDDAWIRDCGPTFLVNDKG------DLRAVDWEFNAWGG 125 (377)
T ss_dssp SCEEEEECG--G--GHHHHHHHHHTTT-C-CSEEEE--ECCCSSCCTTTSSCEEEECSSS------CEEEEEEECCTTTT
T ss_pred CcEEEEECH--H--HHHHHHHHhhhcC-C-CceEEE--EcCCCCEecccccceEEEcCCC------CEEEEEeecccccc
Confidence 578777532 1 2356677554221 1 110111 0123558999999984422223 23466777776
Q ss_pred --------cCCCHHHHHHHHHHhccCCCCCCcceEEeeeec--------CCeEEE--EeecCCCCCCCHHHHHHHHHHHH
Q 029879 90 --------MSTDVAATRRIARMVSARGGGLPTVQTLGLVHG--------EDSTEI--ACMLLEPNQVGADRVQNRVEKLA 151 (186)
Q Consensus 90 --------~t~dl~~Ar~IA~~IR~~~GGL~~VqAmgl~~~--------~g~vqV--S~Nl~d~~~tp~~~V~e~V~~~A 151 (186)
-..|=.++++++.. -|++.++...+-+| +|.+=+ +| |+|+...|--.-.+.-+.+.
T Consensus 126 ~~~g~~~~~~~D~~v~~~~~~~-----~g~~~~~~~~~vlEGGsi~~dG~GTlltTe~c-lLn~nRNp~lsk~eie~~Lk 199 (377)
T 2ewo_A 126 LVDGLYFPWDQDALVARKVCEI-----EGVDSYKTKDFVLEGGSIHVDGEGTVLVTEMC-LLHPSRNPHLTKEDIEDKLK 199 (377)
T ss_dssp TTTCSSSCCTTHHHHHHHHHHT-----TTCCEEEEEEEECCGGGEEEETTTEEEEEHHH-HTSTTSCTTSCHHHHHHHHH
T ss_pred cccccccCccchhHHHHHHHHH-----cCCCeEecCCeEEcCCceEECCCceEEEEccc-ccCCCCCCccCHHHHHHHHH
Confidence 33566778888753 25666663444433 333333 35 66776654322222224455
Q ss_pred HHcCCc
Q 029879 152 AEEGLD 157 (186)
Q Consensus 152 ~~~Gv~ 157 (186)
+..|++
T Consensus 200 ~~LG~~ 205 (377)
T 2ewo_A 200 DYLNCV 205 (377)
T ss_dssp HHHCCS
T ss_pred HHcCCC
Confidence 557885
No 14
>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7
Probab=21.01 E-value=1.8e+02 Score=18.93 Aligned_cols=73 Identities=8% Similarity=0.154 Sum_probs=45.2
Q ss_pred eeeeecCCC-HHHHHHHHHHhccCCCCCCcceEEeeeecCCeEEEEeecCCCCCCCHHHHHHHHHHHHHHcCCcccc
Q 029879 85 YNIPIMSTD-VAATRRIARMVSARGGGLPTVQTLGLVHGEDSTEIACMLLEPNQVGADRVQNRVEKLAAEEGLDVEK 160 (186)
Q Consensus 85 yNV~L~t~d-l~~Ar~IA~~IR~~~GGL~~VqAmgl~~~~g~vqVS~Nl~d~~~tp~~~V~e~V~~~A~~~Gv~V~~ 160 (186)
+-+.+...| .-+-.+|+..+.+.++-+-.++.--. .+...+.+-+.=++...+..+.+.+++++.++|+.+.-
T Consensus 6 ~~l~v~~~DrpGila~vt~~la~~~~NI~~i~~~~~---~~~~~~~i~v~~~~~~~l~~l~~~L~~~~~~~~~~~~~ 79 (91)
T 1zpv_A 6 AIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVL---DEYFTMMAVVSSDEKQDFTYLRNEFEAFGQTLNVKINI 79 (91)
T ss_dssp EEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEE---TTEEEEEEEEEESSCCCHHHHHHHHHHHHHHHTEEEEE
T ss_pred EEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEeEEE---cCEEEEEEEEEeCCCCCHHHHHHHHHHHHHHcCCEEEE
Confidence 344554444 44557788888888776655543221 24433333222122457899999999999999987643
No 15
>4h3d_A 3-dehydroquinate dehydratase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, aldolase class I; HET: PGE SHL; 1.95A {Clostridium difficile} PDB: 3js3_A*
Probab=20.59 E-value=1e+02 Score=25.36 Aligned_cols=34 Identities=18% Similarity=0.175 Sum_probs=25.9
Q ss_pred eecCCCCCCCHHHHHHHHHHHHHHcCCcccceee
Q 029879 130 CMLLEPNQVGADRVQNRVEKLAAEEGLDVEKGYF 163 (186)
Q Consensus 130 ~Nl~d~~~tp~~~V~e~V~~~A~~~Gv~V~~~yl 163 (186)
+.+.|.+..-...+...+.+.|++.|+.|+.||-
T Consensus 114 ~d~iDvEl~~~~~~~~~l~~~a~~~~~kiI~S~H 147 (258)
T 4h3d_A 114 VDLIDVELFMGDEVIDEVVNFAHKKEVKVIISNH 147 (258)
T ss_dssp CSEEEEEGGGCHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred chhhHHhhhccHHHHHHHHHHHHhCCCEEEEEEe
Confidence 3455666666677888888889999999999883
No 16
>3o1f_A ATP-dependent CLP protease adapter protein CLPS; adaptor, hydrolase; HET: SME; 1.40A {Escherichia coli} SCOP: d.45.1.2 PDB: 3o1f_B* 3o2o_A
Probab=20.20 E-value=1.8e+02 Score=20.17 Aligned_cols=47 Identities=15% Similarity=0.179 Sum_probs=31.8
Q ss_pred cCCCCCCCHHHHHHHHHH--------------HHHHcCCcccceeecCCChHHHHHHHHHHHHhhh
Q 029879 132 LLEPNQVGADRVQNRVEK--------------LAAEEGLDVEKGYFTDFSPEMIVEKYMNLINATA 183 (186)
Q Consensus 132 l~d~~~tp~~~V~e~V~~--------------~A~~~Gv~V~~~yl~gf~p~~ile~~~~~~~~~~ 183 (186)
|.|-+.||..-|.+.+++ .+.+.|..|++.| +.++-|.+...+...|
T Consensus 7 l~NDd~~tme~Vi~vL~~vf~~~~~~A~~iml~vH~~G~avv~~~-----~~e~AE~k~~~v~~~a 67 (81)
T 3o1f_A 7 LVNDDYTPMEFVIDVLQKFFSYDVERATQLMLAVHYQGKAICGVF-----TAEVAETKVAXVNKYA 67 (81)
T ss_dssp EECCSSSCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHSEEEEEEE-----CHHHHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCCEEEEEC-----CHHHHHHHHHHHHHHH
Confidence 567789999988887776 3445555555544 5667887777665544
No 17
>2rpb_A Hypothetical membrane protein; SPFH domain; NMR {Pyrococcus horikoshii}
Probab=20.06 E-value=63 Score=22.51 Aligned_cols=28 Identities=14% Similarity=0.410 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHcCCcccceeecCCCh
Q 029879 141 DRVQNRVEKLAAEEGLDVEKGYFTDFSP 168 (186)
Q Consensus 141 ~~V~e~V~~~A~~~Gv~V~~~yl~gf~p 168 (186)
..+.+.++.....||+.|..-.+.++++
T Consensus 83 ~~i~~~l~~~~~~~Gi~v~~v~I~~i~~ 110 (113)
T 2rpb_A 83 ARLREELDKITDRWGVKITRVEIQRIDP 110 (113)
T ss_dssp HHHHHHHHHHHGGGTEECCCEEECCCBC
T ss_pred HHHHHHHHHHHHhcCeEEEEEEEEEecC
Confidence 4778888889999999999988877653
Done!