BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 029880
         (186 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3IA7|A Chain A, Crystal Structure Of Calg4, The Calicheamicin
           Glycosyltransferase
 pdb|3IA7|B Chain B, Crystal Structure Of Calg4, The Calicheamicin
           Glycosyltransferase
          Length = 402

 Score = 27.7 bits (60), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 13/74 (17%)

Query: 44  ISSSKSRNNAISRPRLLVRASATEFPANVG-------DLLGDFSIFTAAGEPVLFKDLWD 96
           ++   + N   S  + L +++    PA+V        DLLG + + T    PV  K+ WD
Sbjct: 130 LTGGFAANEHYSLFKELWKSNGQRHPADVEAVHSVLVDLLGKYGVDT----PV--KEYWD 183

Query: 97  QNEGVAVVALLRHF 110
           + EG+ +V L + F
Sbjct: 184 EIEGLTIVFLPKSF 197


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.134    0.401 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,952,909
Number of Sequences: 62578
Number of extensions: 179539
Number of successful extensions: 459
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 458
Number of HSP's gapped (non-prelim): 4
length of query: 186
length of database: 14,973,337
effective HSP length: 93
effective length of query: 93
effective length of database: 9,153,583
effective search space: 851283219
effective search space used: 851283219
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)