Query 029880
Match_columns 186
No_of_seqs 181 out of 1267
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 05:07:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029880.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029880hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1225 Bcp Peroxiredoxin [Pos 99.9 2.6E-24 5.7E-29 170.3 10.5 106 68-178 2-107 (157)
2 cd02970 PRX_like2 Peroxiredoxi 99.9 4.8E-23 1E-27 157.5 9.0 99 75-177 1-99 (149)
3 PF00578 AhpC-TSA: AhpC/TSA fa 99.9 1.3E-22 2.9E-27 150.9 10.2 100 72-177 1-101 (124)
4 cd03018 PRX_AhpE_like Peroxire 99.9 2.5E-22 5.5E-27 154.4 10.9 104 70-177 1-106 (149)
5 PF08534 Redoxin: Redoxin; In 99.9 1.1E-21 2.3E-26 150.8 9.0 101 71-177 1-104 (146)
6 PRK09437 bcp thioredoxin-depen 99.9 2.5E-21 5.4E-26 150.6 10.4 104 68-177 2-106 (154)
7 cd03013 PRX5_like Peroxiredoxi 99.9 2.3E-21 4.9E-26 152.8 9.0 102 72-177 1-109 (155)
8 PRK00522 tpx lipid hydroperoxi 99.8 8.5E-21 1.8E-25 150.9 10.7 103 67-177 15-120 (167)
9 PTZ00256 glutathione peroxidas 99.8 1E-20 2.2E-25 152.5 10.6 94 72-170 16-120 (183)
10 PRK13190 putative peroxiredoxi 99.8 9.8E-21 2.1E-25 155.2 10.6 104 69-176 1-108 (202)
11 PRK13599 putative peroxiredoxi 99.8 9.5E-21 2.1E-25 157.0 10.3 102 71-177 3-110 (215)
12 cd03017 PRX_BCP Peroxiredoxin 99.8 8.2E-21 1.8E-25 144.4 9.1 100 74-179 1-101 (140)
13 PTZ00056 glutathione peroxidas 99.8 1.2E-20 2.6E-25 154.4 10.4 89 71-165 14-110 (199)
14 TIGR03137 AhpC peroxiredoxin. 99.8 1E-20 2.2E-25 153.0 9.6 102 71-177 3-111 (187)
15 cd03016 PRX_1cys Peroxiredoxin 99.8 1E-20 2.2E-25 155.0 9.5 101 72-177 1-107 (203)
16 PLN02412 probable glutathione 99.8 1.8E-20 3.8E-25 149.2 10.1 96 74-175 7-114 (167)
17 cd00340 GSH_Peroxidase Glutath 99.8 1.7E-20 3.6E-25 146.5 9.4 93 76-175 2-106 (152)
18 cd03014 PRX_Atyp2cys Peroxired 99.8 2.3E-20 4.9E-25 143.2 9.7 99 71-177 1-102 (143)
19 PLN02399 phospholipid hydroper 99.8 6.2E-20 1.3E-24 154.2 12.8 91 69-165 72-171 (236)
20 cd03015 PRX_Typ2cys Peroxiredo 99.8 4.3E-20 9.4E-25 147.0 11.1 100 72-177 1-112 (173)
21 PTZ00137 2-Cys peroxiredoxin; 99.8 5.7E-20 1.2E-24 156.4 10.5 107 67-177 65-181 (261)
22 PRK13191 putative peroxiredoxi 99.8 5.7E-20 1.2E-24 152.3 10.0 104 69-176 6-114 (215)
23 cd02971 PRX_family Peroxiredox 99.8 7.9E-20 1.7E-24 138.7 9.4 100 75-179 1-101 (140)
24 PRK13189 peroxiredoxin; Provis 99.8 9.5E-20 2.1E-24 151.6 10.5 106 69-177 8-117 (222)
25 PRK10382 alkyl hydroperoxide r 99.8 2E-19 4.3E-24 146.3 10.4 102 70-176 2-110 (187)
26 TIGR02540 gpx7 putative glutat 99.8 1.7E-19 3.7E-24 140.7 8.6 83 77-165 3-94 (153)
27 PRK03147 thiol-disulfide oxido 99.8 5.7E-19 1.2E-23 138.8 11.3 107 67-179 32-139 (173)
28 cd02969 PRX_like1 Peroxiredoxi 99.8 3.2E-19 7E-24 141.3 9.2 101 73-178 1-109 (171)
29 KOG0855 Alkyl hydroperoxide re 99.8 6.8E-19 1.5E-23 140.0 7.9 121 51-175 44-164 (211)
30 cd03012 TlpA_like_DipZ_like Tl 99.8 6.3E-19 1.4E-23 133.1 6.9 88 86-179 13-106 (126)
31 PRK15000 peroxidase; Provision 99.8 3.4E-18 7.3E-23 140.2 10.5 105 71-177 3-117 (200)
32 TIGR02661 MauD methylamine deh 99.8 4.1E-18 8.9E-23 138.0 10.9 104 68-179 44-147 (189)
33 cd02968 SCO SCO (an acronym fo 99.8 2.5E-18 5.3E-23 131.0 9.0 98 75-178 1-109 (142)
34 PRK15412 thiol:disulfide inter 99.8 3E-18 6.4E-23 138.2 9.0 102 69-179 38-143 (185)
35 PTZ00253 tryparedoxin peroxida 99.7 7.7E-18 1.7E-22 137.4 8.9 104 70-176 6-118 (199)
36 TIGR00385 dsbE periplasmic pro 99.7 1.3E-17 2.7E-22 133.0 8.7 101 69-178 33-137 (173)
37 cd02967 mauD Methylamine utili 99.7 2.8E-17 6.1E-22 121.0 9.6 93 77-177 1-94 (114)
38 cd03010 TlpA_like_DsbE TlpA-li 99.7 1.8E-17 3.9E-22 124.7 7.8 96 74-178 1-100 (127)
39 PRK10606 btuE putative glutath 99.7 1.4E-16 3E-21 129.2 10.1 88 74-168 3-101 (183)
40 cd02966 TlpA_like_family TlpA- 99.7 1.2E-16 2.5E-21 114.6 8.6 95 78-178 1-97 (116)
41 cd03011 TlpA_like_ScsD_MtbDsbE 99.6 5.5E-16 1.2E-20 115.4 8.2 92 77-179 1-94 (123)
42 COG0450 AhpC Peroxiredoxin [Po 99.6 2.2E-15 4.7E-20 122.5 9.1 106 69-177 2-116 (194)
43 PRK14018 trifunctional thiored 99.6 1.8E-15 3.9E-20 139.5 9.3 101 70-178 32-139 (521)
44 cd03008 TryX_like_RdCVF Trypar 99.6 7.4E-16 1.6E-20 120.9 5.2 85 87-177 16-111 (146)
45 PLN02919 haloacid dehalogenase 99.6 3.4E-15 7.4E-20 147.5 8.3 105 69-179 390-503 (1057)
46 cd03009 TryX_like_TryX_NRX Try 99.6 2.1E-15 4.5E-20 114.1 3.8 71 81-155 3-76 (131)
47 cd02964 TryX_like_family Trypa 99.5 2.4E-14 5.2E-19 108.9 5.6 89 85-178 5-99 (132)
48 TIGR01626 ytfJ_HI0045 conserve 99.5 4.7E-14 1E-18 114.6 6.9 102 68-179 21-146 (184)
49 PRK13728 conjugal transfer pro 99.4 1.4E-13 3.1E-18 111.5 6.1 62 70-144 49-110 (181)
50 KOG0854 Alkyl hydroperoxide re 99.3 2E-12 4.2E-17 104.1 7.0 107 68-177 4-117 (224)
51 PF13905 Thioredoxin_8: Thiore 99.2 3.2E-11 7E-16 86.0 7.5 77 100-178 1-82 (95)
52 TIGR02738 TrbB type-F conjugat 99.2 7.5E-11 1.6E-15 93.2 6.6 72 85-169 43-130 (153)
53 cd02950 TxlA TRX-like protein 99.0 2.4E-10 5.2E-15 88.8 4.5 88 80-171 2-90 (142)
54 cd02985 TRX_CDSP32 TRX family, 99.0 1.7E-09 3.8E-14 79.1 7.7 55 99-155 14-68 (103)
55 KOG4498 Uncharacterized conser 99.0 1.2E-09 2.7E-14 88.5 5.9 102 70-178 26-127 (197)
56 COG2077 Tpx Peroxiredoxin [Pos 98.9 7E-09 1.5E-13 81.6 9.0 105 66-177 14-120 (158)
57 PF02630 SCO1-SenC: SCO1/SenC; 98.9 1.2E-08 2.7E-13 81.7 10.7 87 72-164 28-121 (174)
58 KOG2501 Thioredoxin, nucleored 98.9 1.5E-09 3.3E-14 85.9 3.5 97 79-178 15-115 (157)
59 PF00255 GSHPx: Glutathione pe 98.9 2.2E-08 4.8E-13 75.0 9.3 80 78-164 3-91 (108)
60 KOG0852 Alkyl hydroperoxide re 98.8 1.3E-08 2.8E-13 81.9 8.2 103 71-176 5-115 (196)
61 COG0386 BtuE Glutathione perox 98.8 1.8E-08 3.9E-13 79.5 8.1 102 76-184 5-132 (162)
62 COG0678 AHP1 Peroxiredoxin [Po 98.7 2.8E-08 6.1E-13 78.2 6.9 107 70-178 3-118 (165)
63 cd02999 PDI_a_ERp44_like PDIa 98.7 2.5E-08 5.4E-13 72.9 6.3 65 99-167 17-82 (100)
64 cd02948 TRX_NDPK TRX domain, T 98.7 3.1E-08 6.8E-13 72.2 6.6 50 99-148 16-65 (102)
65 KOG0541 Alkyl hydroperoxide re 98.7 6.9E-08 1.5E-12 76.4 8.1 109 66-178 5-124 (171)
66 cd02963 TRX_DnaJ TRX domain, D 98.6 8E-08 1.7E-12 71.2 6.5 54 99-155 23-76 (111)
67 cd02956 ybbN ybbN protein fami 98.6 9.1E-08 2E-12 68.1 6.3 65 99-167 11-76 (96)
68 KOG1651 Glutathione peroxidase 98.6 1.7E-07 3.6E-12 74.8 8.0 104 75-184 13-141 (171)
69 TIGR02740 TraF-like TraF-like 98.6 6.2E-08 1.3E-12 83.1 5.0 76 85-167 155-239 (271)
70 cd02993 PDI_a_APS_reductase PD 98.6 2E-07 4.3E-12 68.6 6.9 45 99-143 20-64 (109)
71 PF05988 DUF899: Bacterial pro 98.6 6.1E-07 1.3E-11 74.2 10.3 105 67-175 37-146 (211)
72 cd02953 DsbDgamma DsbD gamma f 98.5 4.4E-07 9.5E-12 65.8 7.4 71 99-170 10-86 (104)
73 cd02951 SoxW SoxW family; SoxW 98.5 3.8E-07 8.2E-12 68.4 6.9 68 99-167 12-94 (125)
74 PF13911 AhpC-TSA_2: AhpC/TSA 98.5 1.1E-07 2.4E-12 70.6 3.6 55 122-178 2-56 (115)
75 cd03000 PDI_a_TMX3 PDIa family 98.5 5.1E-07 1.1E-11 65.6 6.4 54 99-155 14-69 (104)
76 cd03003 PDI_a_ERdj5_N PDIa fam 98.4 8.2E-07 1.8E-11 64.0 7.2 53 99-155 17-69 (101)
77 cd02962 TMX2 TMX2 family; comp 98.4 7.7E-07 1.7E-11 70.3 7.2 54 99-155 46-99 (152)
78 PRK09381 trxA thioredoxin; Pro 98.4 5.7E-07 1.2E-11 65.6 6.0 46 100-146 21-66 (109)
79 cd02949 TRX_NTR TRX domain, no 98.4 7.6E-07 1.6E-11 64.0 6.3 68 99-170 12-80 (97)
80 PRK10996 thioredoxin 2; Provis 98.4 3.1E-07 6.7E-12 70.9 3.9 71 90-166 44-115 (139)
81 cd03005 PDI_a_ERp46 PDIa famil 98.4 1E-06 2.2E-11 62.9 6.3 44 102-145 18-63 (102)
82 COG1999 Uncharacterized protei 98.4 2.3E-06 4.9E-11 70.7 9.0 83 78-165 49-139 (207)
83 cd03004 PDI_a_ERdj5_C PDIa fam 98.4 2.1E-06 4.5E-11 62.0 7.8 65 99-167 18-83 (104)
84 cd03002 PDI_a_MPD1_like PDI fa 98.4 1.4E-06 2.9E-11 63.2 6.7 68 99-168 17-85 (109)
85 PTZ00051 thioredoxin; Provisio 98.3 1.6E-06 3.4E-11 61.8 6.6 52 99-155 17-68 (98)
86 cd02959 ERp19 Endoplasmic reti 98.3 1.1E-06 2.5E-11 66.0 6.1 72 99-172 18-91 (117)
87 cd02984 TRX_PICOT TRX domain, 98.3 1.6E-06 3.5E-11 61.5 6.2 52 100-155 14-65 (97)
88 cd02954 DIM1 Dim1 family; Dim1 98.3 1.6E-06 3.5E-11 65.5 6.1 53 99-155 13-65 (114)
89 cd02997 PDI_a_PDIR PDIa family 98.3 1.8E-06 3.9E-11 61.7 6.1 68 99-169 16-86 (104)
90 cd02994 PDI_a_TMX PDIa family, 98.3 2.1E-06 4.6E-11 61.6 6.5 53 99-155 16-68 (101)
91 cd02998 PDI_a_ERp38 PDIa famil 98.3 2.3E-06 5.1E-11 61.0 6.3 67 100-168 18-86 (105)
92 KOG0907 Thioredoxin [Posttrans 98.3 2.3E-06 5E-11 63.7 6.1 52 99-155 20-71 (106)
93 TIGR01126 pdi_dom protein disu 98.3 2.9E-06 6.4E-11 60.2 6.4 66 99-169 12-81 (102)
94 cd03006 PDI_a_EFP1_N PDIa fami 98.3 3.5E-06 7.5E-11 63.3 6.9 47 99-146 28-74 (113)
95 cd03001 PDI_a_P5 PDIa family, 98.2 4.8E-06 1E-10 59.5 7.2 65 99-167 17-82 (103)
96 cd02995 PDI_a_PDI_a'_C PDIa fa 98.2 5.6E-06 1.2E-10 59.0 7.0 47 99-145 17-64 (104)
97 cd02992 PDI_a_QSOX PDIa family 98.2 6E-06 1.3E-10 61.6 7.2 55 100-155 19-75 (114)
98 cd02996 PDI_a_ERp44 PDIa famil 98.2 6.8E-06 1.5E-10 60.0 7.1 54 99-155 17-75 (108)
99 TIGR01068 thioredoxin thioredo 98.2 5.8E-06 1.3E-10 58.3 6.0 52 100-155 14-65 (101)
100 PHA02278 thioredoxin-like prot 98.1 6.3E-06 1.4E-10 60.9 5.8 56 99-155 13-69 (103)
101 cd02947 TRX_family TRX family; 98.1 6.7E-06 1.5E-10 56.1 5.5 64 100-168 10-74 (93)
102 PF00085 Thioredoxin: Thioredo 98.1 8.2E-06 1.8E-10 57.8 6.1 52 100-155 17-68 (103)
103 cd02957 Phd_like Phosducin (Ph 98.1 1.2E-05 2.6E-10 59.5 7.0 50 100-155 24-73 (113)
104 cd02961 PDI_a_family Protein D 98.1 1.4E-05 3E-10 55.7 6.8 66 99-167 14-81 (101)
105 cd02986 DLP Dim1 family, Dim1- 98.1 1.1E-05 2.5E-10 60.9 6.7 53 99-155 13-65 (114)
106 cd02952 TRP14_like Human TRX-r 98.1 6.3E-06 1.4E-10 62.7 5.3 67 99-166 20-99 (119)
107 TIGR01295 PedC_BrcD bacterioci 98.1 9.7E-06 2.1E-10 61.5 5.9 54 99-155 22-83 (122)
108 COG0526 TrxA Thiol-disulfide i 98.0 1.9E-05 4E-10 54.9 6.2 42 100-142 32-73 (127)
109 PLN00410 U5 snRNP protein, DIM 98.0 2.1E-05 4.5E-10 61.6 6.5 53 99-155 22-74 (142)
110 KOG0910 Thioredoxin-like prote 98.0 1.1E-05 2.4E-10 63.5 5.0 52 100-155 61-112 (150)
111 KOG2792 Putative cytochrome C 98.0 5.4E-05 1.2E-09 64.5 9.2 69 68-143 114-186 (280)
112 cd02975 PfPDO_like_N Pyrococcu 98.0 3.9E-05 8.4E-10 57.2 7.4 63 99-166 21-84 (113)
113 COG4312 Uncharacterized protei 97.9 8E-05 1.7E-09 62.1 8.6 96 77-176 53-153 (247)
114 PF13098 Thioredoxin_2: Thiore 97.9 5.2E-05 1.1E-09 55.1 6.8 72 99-170 4-95 (112)
115 TIGR00424 APS_reduc 5'-adenyly 97.9 4.6E-05 9.9E-10 70.0 7.5 46 99-144 370-415 (463)
116 cd02989 Phd_like_TxnDC9 Phosdu 97.8 5.7E-05 1.2E-09 56.3 6.3 66 100-170 22-88 (113)
117 PTZ00443 Thioredoxin domain-co 97.8 4.2E-05 9E-10 64.1 6.1 52 100-155 52-103 (224)
118 PF00837 T4_deiodinase: Iodoth 97.8 4.7E-05 1E-09 64.2 5.5 104 67-175 70-199 (237)
119 cd01659 TRX_superfamily Thiore 97.7 0.00018 3.9E-09 44.4 6.8 50 104-155 1-50 (69)
120 PRK00293 dipZ thiol:disulfide 97.7 9.1E-05 2E-09 69.6 7.5 71 99-171 473-548 (571)
121 PTZ00102 disulphide isomerase; 97.7 5.5E-05 1.2E-09 68.3 5.7 70 99-170 374-444 (477)
122 PLN02309 5'-adenylylsulfate re 97.7 0.00011 2.3E-09 67.5 7.5 44 99-142 364-407 (457)
123 COG3118 Thioredoxin domain-con 97.7 0.0001 2.2E-09 64.0 6.6 48 100-148 43-90 (304)
124 TIGR00411 redox_disulf_1 small 97.7 0.00013 2.7E-09 50.1 5.9 56 103-164 2-58 (82)
125 PF13899 Thioredoxin_7: Thiore 97.6 0.00037 8E-09 48.6 7.9 65 99-166 16-82 (82)
126 TIGR01130 ER_PDI_fam protein d 97.6 0.00013 2.9E-09 65.0 6.7 54 99-155 17-72 (462)
127 cd02982 PDI_b'_family Protein 97.6 0.00023 4.9E-09 50.9 6.0 52 100-155 12-63 (103)
128 cd03065 PDI_b_Calsequestrin_N 97.5 0.00024 5.1E-09 54.0 5.9 54 99-155 26-84 (120)
129 cd02955 SSP411 TRX domain, SSP 97.5 0.0005 1.1E-08 52.5 7.4 71 99-172 14-95 (124)
130 cd02965 HyaE HyaE family; HyaE 97.5 0.00025 5.4E-09 53.4 5.6 53 99-155 26-80 (111)
131 cd02987 Phd_like_Phd Phosducin 97.4 0.00033 7.2E-09 56.3 6.0 49 101-155 84-132 (175)
132 PTZ00102 disulphide isomerase; 97.4 0.00049 1.1E-08 62.1 6.8 54 99-155 48-103 (477)
133 TIGR02200 GlrX_actino Glutared 97.3 0.0011 2.5E-08 44.6 6.5 54 104-165 2-57 (77)
134 TIGR02196 GlrX_YruB Glutaredox 97.3 0.0017 3.7E-08 42.8 7.1 54 104-166 2-57 (74)
135 cd02973 TRX_GRX_like Thioredox 97.2 0.00091 2E-08 44.4 5.4 54 104-164 3-57 (67)
136 TIGR00412 redox_disulf_2 small 97.1 0.0014 3.1E-08 45.3 5.6 41 105-148 3-43 (76)
137 TIGR01130 ER_PDI_fam protein d 97.1 0.001 2.3E-08 59.2 6.0 47 99-145 363-411 (462)
138 PHA02125 thioredoxin-like prot 97.0 0.0027 5.8E-08 43.6 5.9 50 104-165 2-52 (75)
139 KOG0190 Protein disulfide isom 96.9 0.00094 2E-08 61.8 3.8 63 99-164 41-104 (493)
140 cd02988 Phd_like_VIAF Phosduci 96.9 0.0023 5E-08 52.3 5.6 42 100-143 102-143 (192)
141 TIGR02187 GlrX_arch Glutaredox 96.8 0.0039 8.4E-08 51.2 6.8 52 99-155 132-183 (215)
142 PTZ00062 glutaredoxin; Provisi 96.8 0.003 6.5E-08 52.3 5.8 40 101-142 18-57 (204)
143 cd03026 AhpF_NTD_C TRX-GRX-lik 96.8 0.0037 8.1E-08 44.8 5.4 52 99-155 11-62 (89)
144 TIGR02187 GlrX_arch Glutaredox 96.6 0.0045 9.7E-08 50.9 5.7 52 101-155 20-74 (215)
145 KOG0908 Thioredoxin-like prote 96.6 0.0031 6.8E-08 53.8 4.5 41 99-141 20-60 (288)
146 PF14595 Thioredoxin_9: Thiore 96.5 0.0026 5.6E-08 48.8 3.5 70 99-170 40-110 (129)
147 cd02976 NrdH NrdH-redoxin (Nrd 96.5 0.012 2.5E-07 38.7 6.2 56 104-167 2-58 (73)
148 cd03007 PDI_a_ERp29_N PDIa fam 96.5 0.0048 1E-07 46.7 4.7 67 91-163 11-84 (116)
149 TIGR02180 GRX_euk Glutaredoxin 96.2 0.016 3.4E-07 39.6 5.7 57 104-165 1-60 (84)
150 smart00594 UAS UAS domain. 96.1 0.046 1E-06 41.0 8.3 69 99-168 26-97 (122)
151 PF13728 TraF: F plasmid trans 96.0 0.013 2.9E-07 48.6 5.4 63 101-168 121-194 (215)
152 cd02960 AGR Anterior Gradient 96.0 0.012 2.7E-07 45.4 4.8 70 99-172 22-94 (130)
153 cd02958 UAS UAS family; UAS is 96.0 0.057 1.2E-06 39.6 8.0 69 99-169 16-89 (114)
154 PF00462 Glutaredoxin: Glutare 95.8 0.024 5.2E-07 36.9 4.9 54 104-165 1-55 (60)
155 TIGR02190 GlrX-dom Glutaredoxi 95.6 0.042 9E-07 38.0 5.7 56 104-167 10-65 (79)
156 cd02066 GRX_family Glutaredoxi 95.6 0.035 7.5E-07 36.0 5.1 56 104-167 2-58 (72)
157 PF04592 SelP_N: Selenoprotein 95.5 0.038 8.3E-07 46.7 6.1 81 74-164 8-94 (238)
158 TIGR02194 GlrX_NrdH Glutaredox 95.5 0.062 1.3E-06 36.3 6.1 55 104-167 1-56 (72)
159 PF06110 DUF953: Eukaryotic pr 95.4 0.051 1.1E-06 41.3 6.0 42 110-152 36-81 (119)
160 KOG0191 Thioredoxin/protein di 95.4 0.026 5.6E-07 50.3 5.1 60 100-165 47-107 (383)
161 PRK13703 conjugal pilus assemb 95.3 0.035 7.5E-07 47.3 5.4 39 102-143 145-183 (248)
162 PRK11200 grxA glutaredoxin 1; 95.1 0.11 2.3E-06 36.2 6.5 60 104-165 3-64 (85)
163 TIGR02739 TraF type-F conjugat 95.0 0.05 1.1E-06 46.6 5.5 62 101-167 151-223 (256)
164 PRK10329 glutaredoxin-like pro 94.8 0.13 2.8E-06 36.0 6.3 56 104-167 3-58 (81)
165 cd03418 GRX_GRXb_1_3_like Glut 94.7 0.17 3.7E-06 33.8 6.6 57 104-167 2-59 (75)
166 KOG0190 Protein disulfide isom 94.4 0.052 1.1E-06 50.4 4.4 34 99-132 383-416 (493)
167 cd03419 GRX_GRXh_1_2_like Glut 94.4 0.11 2.5E-06 35.2 5.1 58 104-167 2-61 (82)
168 KOG3425 Uncharacterized conser 94.3 0.12 2.7E-06 39.5 5.5 45 110-155 43-91 (128)
169 cd03023 DsbA_Com1_like DsbA fa 94.2 0.086 1.9E-06 39.5 4.5 32 99-130 4-35 (154)
170 cd03027 GRX_DEP Glutaredoxin ( 93.9 0.28 6.1E-06 33.0 6.3 56 104-167 3-59 (73)
171 cd03029 GRX_hybridPRX5 Glutare 93.7 0.24 5.3E-06 33.2 5.6 56 104-167 3-58 (72)
172 PF13462 Thioredoxin_4: Thiore 93.7 0.26 5.7E-06 37.4 6.5 43 99-141 11-54 (162)
173 COG0695 GrxC Glutaredoxin and 93.6 0.26 5.7E-06 34.5 5.8 58 104-168 3-62 (80)
174 cd03028 GRX_PICOT_like Glutare 93.6 0.27 5.8E-06 34.9 5.9 57 101-165 8-69 (90)
175 TIGR00365 monothiol glutaredox 93.4 0.36 7.8E-06 34.9 6.4 58 101-166 12-74 (97)
176 KOG1731 FAD-dependent sulfhydr 92.9 0.043 9.2E-07 51.7 1.0 60 101-163 58-120 (606)
177 TIGR02181 GRX_bact Glutaredoxi 92.8 0.32 7E-06 33.0 5.2 56 104-167 1-57 (79)
178 KOG0191 Thioredoxin/protein di 92.6 0.18 3.9E-06 44.9 4.6 42 101-142 163-205 (383)
179 COG4232 Thiol:disulfide interc 92.4 0.21 4.5E-06 47.2 4.8 83 90-172 464-549 (569)
180 PRK10638 glutaredoxin 3; Provi 92.3 0.5 1.1E-05 32.7 5.7 55 104-166 4-59 (83)
181 PF09695 YtfJ_HI0045: Bacteria 92.1 1.5 3.2E-05 35.1 8.7 107 70-177 1-122 (160)
182 PHA03050 glutaredoxin; Provisi 91.7 0.6 1.3E-05 34.6 5.8 61 104-167 15-77 (108)
183 PF07976 Phe_hydrox_dim: Pheno 91.6 0.13 2.8E-06 41.1 2.3 110 66-177 26-165 (169)
184 TIGR02189 GlrX-like_plant Glut 90.7 0.38 8.3E-06 34.9 3.8 52 106-165 12-67 (99)
185 TIGR02183 GRXA Glutaredoxin, G 90.7 0.81 1.7E-05 32.1 5.4 60 104-165 2-63 (86)
186 PRK10824 glutaredoxin-4; Provi 90.4 0.77 1.7E-05 34.6 5.4 54 101-163 15-74 (115)
187 KOG0912 Thiol-disulfide isomer 89.3 0.75 1.6E-05 40.7 5.1 32 101-132 14-45 (375)
188 cd03019 DsbA_DsbA DsbA family, 89.0 0.81 1.8E-05 35.3 4.8 38 99-137 14-51 (178)
189 PF05768 DUF836: Glutaredoxin- 88.9 0.64 1.4E-05 32.3 3.7 56 104-167 2-57 (81)
190 PRK01655 spxA transcriptional 88.2 0.45 9.8E-06 36.4 2.7 60 104-172 2-65 (131)
191 TIGR01617 arsC_related transcr 87.7 1.1 2.4E-05 33.3 4.5 63 105-176 2-68 (117)
192 cd03020 DsbA_DsbC_DsbG DsbA fa 87.4 1.2 2.5E-05 35.8 4.8 26 99-124 76-101 (197)
193 PRK10877 protein disulfide iso 87.3 1.3 2.7E-05 37.1 5.1 37 99-139 106-142 (232)
194 COG2179 Predicted hydrolase of 87.2 1.4 3.1E-05 35.6 5.1 40 119-160 48-87 (175)
195 cd03032 ArsC_Spx Arsenate Redu 87.2 0.74 1.6E-05 34.1 3.3 63 104-175 2-68 (115)
196 PF13192 Thioredoxin_3: Thiore 85.7 3.8 8.2E-05 27.8 6.1 41 108-155 6-46 (76)
197 cd03036 ArsC_like Arsenate Red 85.6 1 2.2E-05 33.3 3.3 59 105-172 2-64 (111)
198 cd02977 ArsC_family Arsenate R 85.3 1 2.2E-05 32.6 3.1 59 105-172 2-64 (105)
199 PTZ00062 glutaredoxin; Provisi 85.1 3 6.4E-05 34.5 6.1 55 101-164 113-173 (204)
200 cd02972 DsbA_family DsbA famil 84.5 1.7 3.7E-05 29.3 3.9 35 104-139 1-35 (98)
201 TIGR03759 conj_TIGR03759 integ 84.0 3.8 8.3E-05 33.9 6.3 52 100-159 109-161 (200)
202 cd02991 UAS_ETEA UAS family, E 82.8 5.7 0.00012 29.6 6.4 66 99-167 16-86 (116)
203 PRK12559 transcriptional regul 82.8 1.4 3.1E-05 33.7 3.1 61 104-173 2-66 (131)
204 cd03060 GST_N_Omega_like GST_N 81.0 3.4 7.4E-05 27.3 4.2 56 105-168 2-57 (71)
205 PRK13344 spxA transcriptional 80.7 2.4 5.2E-05 32.5 3.7 60 104-172 2-65 (132)
206 PRK11657 dsbG disulfide isomer 80.4 3.8 8.2E-05 34.7 5.2 29 99-127 116-144 (251)
207 cd03035 ArsC_Yffb Arsenate Red 80.4 5 0.00011 29.4 5.3 45 104-155 1-49 (105)
208 PF01323 DSBA: DSBA-like thior 78.2 8.2 0.00018 30.0 6.3 41 104-144 2-42 (193)
209 PF03190 Thioredox_DsbH: Prote 77.7 5.2 0.00011 32.0 4.9 70 99-170 36-115 (163)
210 cd03041 GST_N_2GST_N GST_N fam 75.4 19 0.00041 24.1 6.7 55 105-167 3-58 (77)
211 COG1651 DsbG Protein-disulfide 75.1 8.7 0.00019 31.5 5.8 48 82-133 70-117 (244)
212 TIGR03765 ICE_PFL_4695 integra 74.9 14 0.0003 27.6 6.2 51 117-169 35-103 (105)
213 cd00570 GST_N_family Glutathio 73.3 6.7 0.00015 24.3 3.8 57 106-169 3-59 (71)
214 PF13778 DUF4174: Domain of un 72.2 26 0.00055 26.2 7.3 76 99-176 9-97 (118)
215 KOG4277 Uncharacterized conser 70.6 1.8 3.9E-05 38.4 0.7 36 101-136 44-79 (468)
216 PF11072 DUF2859: Protein of u 69.9 18 0.00038 28.4 6.1 51 116-168 72-140 (142)
217 PRK10954 periplasmic protein d 67.8 6.4 0.00014 31.9 3.4 36 101-137 38-76 (207)
218 PRK12759 bifunctional gluaredo 66.9 13 0.00027 33.8 5.4 41 104-151 4-44 (410)
219 TIGR00995 3a0901s06TIC22 chlor 66.8 21 0.00046 30.9 6.4 79 73-168 79-162 (270)
220 cd03037 GST_N_GRX2 GST_N famil 66.6 18 0.00039 23.5 4.9 51 107-168 4-56 (71)
221 TIGR01485 SPP_plant-cyano sucr 66.2 17 0.00038 29.9 5.8 53 116-170 20-74 (249)
222 KOG0911 Glutaredoxin-related p 65.9 7.8 0.00017 32.7 3.5 50 99-150 16-65 (227)
223 cd03051 GST_N_GTT2_like GST_N 65.8 15 0.00032 23.7 4.3 58 105-168 2-60 (74)
224 PF06053 DUF929: Domain of unk 65.0 12 0.00025 32.1 4.5 33 99-131 57-89 (249)
225 COG3019 Predicted metal-bindin 64.5 21 0.00045 28.1 5.4 49 101-161 25-73 (149)
226 cd02979 PHOX_C FAD-dependent P 62.9 17 0.00036 28.8 4.8 103 73-177 1-133 (167)
227 PF05176 ATP-synt_10: ATP10 pr 61.2 15 0.00032 31.4 4.5 72 68-144 93-168 (252)
228 COG0561 Cof Predicted hydrolas 60.3 40 0.00086 27.8 6.9 53 119-173 22-74 (264)
229 PF04278 Tic22: Tic22-like fam 59.7 22 0.00049 30.6 5.4 85 74-168 73-162 (274)
230 cd03059 GST_N_SspA GST_N famil 59.0 15 0.00032 23.9 3.3 54 106-168 3-57 (73)
231 cd01427 HAD_like Haloacid deha 58.6 21 0.00046 24.9 4.4 39 117-155 24-62 (139)
232 TIGR02463 MPGP_rel mannosyl-3- 58.6 32 0.0007 27.5 5.9 49 122-172 21-70 (221)
233 PF00875 DNA_photolyase: DNA p 57.7 27 0.00058 26.9 5.1 40 119-160 52-91 (165)
234 PF13419 HAD_2: Haloacid dehal 56.6 21 0.00047 26.4 4.3 37 121-159 81-117 (176)
235 PRK01158 phosphoglycolate phos 56.3 46 0.00099 26.6 6.5 49 120-170 23-71 (230)
236 COG3769 Predicted hydrolase (H 55.7 24 0.00052 30.1 4.7 67 76-169 6-74 (274)
237 PF00702 Hydrolase: haloacid d 55.3 20 0.00043 28.0 4.1 38 119-158 129-166 (215)
238 TIGR01662 HAD-SF-IIIA HAD-supe 55.3 35 0.00075 24.9 5.2 39 120-160 28-74 (132)
239 cd03025 DsbA_FrnE_like DsbA fa 54.8 15 0.00032 28.6 3.3 32 104-136 3-34 (193)
240 TIGR00099 Cof-subfamily Cof su 54.3 52 0.0011 27.0 6.6 47 122-170 21-67 (256)
241 PF09419 PGP_phosphatase: Mito 53.8 31 0.00068 27.6 5.0 79 73-155 15-106 (168)
242 TIGR03143 AhpF_homolog putativ 52.8 35 0.00076 31.9 5.9 51 100-155 476-526 (555)
243 TIGR01482 SPP-subfamily Sucros 51.9 64 0.0014 25.6 6.6 44 122-167 20-63 (225)
244 PF08282 Hydrolase_3: haloacid 51.6 53 0.0011 25.9 6.1 48 121-170 19-66 (254)
245 COG0560 SerB Phosphoserine pho 50.7 29 0.00062 28.5 4.5 40 119-160 79-118 (212)
246 PRK06184 hypothetical protein; 50.6 30 0.00064 31.7 5.0 36 69-105 385-420 (502)
247 cd03055 GST_N_Omega GST_N fami 50.5 32 0.0007 23.7 4.1 55 104-166 19-73 (89)
248 cd00860 ThrRS_anticodon ThrRS 50.3 75 0.0016 21.3 6.8 49 119-169 14-63 (91)
249 TIGR01684 viral_ppase viral ph 50.2 57 0.0012 28.7 6.4 43 120-164 149-193 (301)
250 cd03034 ArsC_ArsC Arsenate Red 49.3 17 0.00037 26.7 2.6 55 105-168 2-60 (112)
251 PF12017 Tnp_P_element: Transp 49.1 55 0.0012 27.7 6.0 37 119-155 195-231 (236)
252 PRK15126 thiamin pyrimidine py 48.4 76 0.0016 26.3 6.8 47 122-170 24-70 (272)
253 cd03061 GST_N_CLIC GST_N famil 47.4 21 0.00045 25.7 2.7 53 110-171 20-73 (91)
254 TIGR00014 arsC arsenate reduct 47.2 53 0.0012 24.1 5.0 44 105-155 2-49 (114)
255 PRK10530 pyridoxal phosphate ( 46.8 69 0.0015 26.2 6.2 48 122-171 25-72 (272)
256 PRK12702 mannosyl-3-phosphogly 46.7 65 0.0014 28.4 6.2 47 123-171 24-70 (302)
257 PF12710 HAD: haloacid dehalog 46.2 27 0.00058 26.8 3.5 36 123-160 95-130 (192)
258 cd01453 vWA_transcription_fact 46.0 1E+02 0.0022 24.4 6.9 43 123-167 126-169 (183)
259 cd03031 GRX_GRX_like Glutaredo 45.9 85 0.0018 24.5 6.2 38 111-155 15-53 (147)
260 KOG0914 Thioredoxin-like prote 45.9 15 0.00033 31.2 2.1 45 99-143 143-187 (265)
261 PRK06183 mhpA 3-(3-hydroxyphen 45.7 1.1E+02 0.0023 28.4 7.9 64 70-142 411-474 (538)
262 COG1393 ArsC Arsenate reductas 45.2 22 0.00047 26.7 2.7 63 104-175 3-69 (117)
263 KOG1752 Glutaredoxin and relat 45.2 89 0.0019 23.0 5.9 46 101-154 14-62 (104)
264 PF05116 S6PP: Sucrose-6F-phos 45.1 1.3E+02 0.0028 25.0 7.7 67 104-172 6-74 (247)
265 KOG1615 Phosphoserine phosphat 45.1 53 0.0011 27.5 5.1 49 120-170 91-145 (227)
266 PHA03398 viral phosphatase sup 44.8 74 0.0016 28.0 6.2 44 119-164 150-195 (303)
267 PRK05778 2-oxoglutarate ferred 44.6 18 0.00039 31.6 2.5 24 108-132 17-40 (301)
268 cd03045 GST_N_Delta_Epsilon GS 43.2 28 0.00061 22.6 2.8 56 106-168 3-60 (74)
269 TIGR01488 HAD-SF-IB Haloacid D 43.1 48 0.001 25.1 4.4 36 120-155 76-111 (177)
270 PRK08294 phenol 2-monooxygenas 43.0 41 0.00088 32.2 4.8 110 68-179 461-598 (634)
271 TIGR01490 HAD-SF-IB-hyp1 HAD-s 42.8 67 0.0014 25.1 5.3 36 120-155 90-125 (202)
272 PF04800 ETC_C1_NDUFA4: ETC co 42.4 35 0.00075 25.2 3.3 38 137-176 51-89 (101)
273 TIGR02461 osmo_MPG_phos mannos 41.7 87 0.0019 25.6 6.0 47 121-169 19-65 (225)
274 cd03033 ArsC_15kD Arsenate Red 41.5 82 0.0018 23.3 5.3 45 104-155 2-50 (113)
275 cd01821 Rhamnogalacturan_acety 40.2 1.7E+02 0.0036 22.8 7.3 58 101-160 66-149 (198)
276 PF11009 DUF2847: Protein of u 40.2 1.5E+02 0.0033 21.9 6.5 55 100-155 19-74 (105)
277 PF08821 CGGC: CGGC domain; I 40.1 85 0.0018 23.2 5.1 62 87-155 26-99 (107)
278 PRK10976 putative hydrolase; P 40.1 92 0.002 25.6 6.0 45 122-168 24-68 (266)
279 cd05017 SIS_PGI_PMI_1 The memb 39.7 1.4E+02 0.003 21.7 6.3 34 120-155 57-90 (119)
280 TIGR03351 PhnX-like phosphonat 39.4 69 0.0015 25.4 5.0 38 120-159 90-127 (220)
281 TIGR01491 HAD-SF-IB-PSPlk HAD- 39.1 68 0.0015 24.8 4.8 36 120-155 83-118 (201)
282 TIGR02471 sucr_syn_bact_C sucr 38.9 1.1E+02 0.0024 24.8 6.2 49 119-170 17-67 (236)
283 PRK10026 arsenate reductase; P 38.5 43 0.00094 26.0 3.5 45 104-155 4-52 (141)
284 cd03040 GST_N_mPGES2 GST_N fam 38.5 1.1E+02 0.0024 19.9 6.3 52 105-166 3-54 (77)
285 TIGR01487 SPP-like sucrose-pho 38.4 94 0.002 24.7 5.7 43 121-165 22-64 (215)
286 PRK14010 potassium-transportin 37.9 63 0.0014 31.5 5.2 37 121-159 445-481 (673)
287 PLN02954 phosphoserine phospha 37.9 65 0.0014 25.6 4.6 38 120-159 87-124 (224)
288 PRK01122 potassium-transportin 37.7 62 0.0013 31.6 5.1 36 120-155 448-483 (679)
289 KOG2741 Dimeric dihydrodiol de 37.4 50 0.0011 29.7 4.1 44 114-159 13-56 (351)
290 cd00858 GlyRS_anticodon GlyRS 37.2 1.6E+02 0.0035 21.4 8.6 52 118-172 40-92 (121)
291 cd01026 TOPRIM_OLD TOPRIM_OLD: 37.1 1.5E+02 0.0032 20.8 6.9 42 128-171 28-69 (97)
292 cd00861 ProRS_anticodon_short 37.1 1.3E+02 0.0029 20.3 5.9 51 117-169 15-66 (94)
293 PF13417 GST_N_3: Glutathione 37.0 27 0.00059 23.1 1.9 55 107-169 2-56 (75)
294 KOG0913 Thiol-disulfide isomer 37.0 8.7 0.00019 32.7 -0.7 35 102-136 41-75 (248)
295 PRK11509 hydrogenase-1 operon 36.5 94 0.002 23.9 5.0 62 89-155 25-88 (132)
296 PF08235 LNS2: LNS2 (Lipin/Ned 36.4 95 0.0021 24.6 5.2 51 120-172 30-89 (157)
297 TIGR01459 HAD-SF-IIA-hyp4 HAD- 36.2 80 0.0017 25.9 5.0 54 101-155 9-64 (242)
298 PLN03098 LPA1 LOW PSII ACCUMUL 36.1 1E+02 0.0022 28.7 6.0 67 71-142 271-337 (453)
299 TIGR00338 serB phosphoserine p 35.8 63 0.0014 25.6 4.2 36 120-155 88-123 (219)
300 smart00775 LNS2 LNS2 domain. T 34.9 1.5E+02 0.0033 22.9 6.2 50 120-171 30-88 (157)
301 TIGR01428 HAD_type_II 2-haloal 34.8 72 0.0016 24.9 4.4 36 120-155 95-130 (198)
302 PF04134 DUF393: Protein of un 34.7 51 0.0011 23.6 3.2 33 108-143 3-35 (114)
303 PF03129 HGTP_anticodon: Antic 34.6 1.4E+02 0.0031 20.3 5.5 48 119-168 15-63 (94)
304 cd00738 HGTP_anticodon HGTP an 34.2 1.4E+02 0.0031 19.9 6.4 50 117-168 15-65 (94)
305 PRK10200 putative racemase; Pr 33.6 82 0.0018 26.1 4.7 44 117-164 59-103 (230)
306 TIGR01647 ATPase-IIIA_H plasma 33.3 80 0.0017 31.0 5.1 37 122-160 447-483 (755)
307 PRK10853 putative reductase; P 33.2 1.1E+02 0.0023 22.8 4.8 45 104-155 2-50 (118)
308 PRK03669 mannosyl-3-phosphogly 32.8 1.4E+02 0.0029 24.9 5.9 49 121-171 28-77 (271)
309 TIGR01668 YqeG_hyp_ppase HAD s 32.6 1.3E+02 0.0028 23.4 5.4 36 120-155 46-82 (170)
310 cd01450 vWFA_subfamily_ECM Von 32.5 1.5E+02 0.0032 21.6 5.6 42 109-153 111-154 (161)
311 cd03052 GST_N_GDAP1 GST_N fami 32.5 80 0.0017 20.9 3.7 58 105-168 2-60 (73)
312 TIGR01449 PGP_bact 2-phosphogl 32.5 77 0.0017 24.8 4.2 36 120-155 88-123 (213)
313 PRK15317 alkyl hydroperoxide r 32.4 96 0.0021 28.6 5.3 51 100-155 116-166 (517)
314 PF04244 DPRP: Deoxyribodipyri 32.3 1.8E+02 0.004 24.2 6.6 49 118-168 47-102 (224)
315 PF03193 DUF258: Protein of un 32.3 1.2E+02 0.0025 24.1 5.1 44 123-168 2-45 (161)
316 PRK11869 2-oxoacid ferredoxin 32.2 55 0.0012 28.3 3.5 22 107-128 6-29 (280)
317 PF07905 PucR: Purine cataboli 32.0 2.1E+02 0.0045 21.1 6.8 43 121-167 60-107 (123)
318 TIGR01681 HAD-SF-IIIC HAD-supe 31.9 1.3E+02 0.0029 22.2 5.2 39 117-155 29-68 (128)
319 cd05013 SIS_RpiR RpiR-like pro 31.7 1.1E+02 0.0024 21.8 4.7 30 120-149 74-103 (139)
320 TIGR01497 kdpB K+-transporting 31.5 92 0.002 30.4 5.2 37 121-159 450-486 (675)
321 TIGR01761 thiaz-red thiazoliny 31.4 52 0.0011 29.3 3.3 32 133-168 27-58 (343)
322 COG5561 Predicted metal-bindin 31.2 35 0.00077 24.9 1.8 30 110-140 5-34 (101)
323 PRK14502 bifunctional mannosyl 31.1 2.3E+02 0.005 27.9 7.8 76 70-170 409-484 (694)
324 TIGR01486 HAD-SF-IIB-MPGP mann 31.1 1.3E+02 0.0028 24.8 5.4 46 123-170 22-67 (256)
325 PRK11867 2-oxoglutarate ferred 30.7 42 0.00091 29.0 2.5 21 110-131 18-38 (286)
326 KOG3414 Component of the U4/U6 30.6 1.3E+02 0.0028 23.5 4.8 55 100-160 23-77 (142)
327 PF12740 Chlorophyllase2: Chlo 30.6 1.6E+02 0.0034 25.4 5.9 36 100-140 16-51 (259)
328 PF00448 SRP54: SRP54-type pro 30.5 1.3E+02 0.0028 24.3 5.2 39 123-163 19-62 (196)
329 cd03056 GST_N_4 GST_N family, 30.4 1.1E+02 0.0023 19.4 4.0 57 106-168 3-60 (73)
330 cd05008 SIS_GlmS_GlmD_1 SIS (S 30.4 59 0.0013 23.4 3.0 33 119-151 59-91 (126)
331 cd05014 SIS_Kpsf KpsF-like pro 30.2 47 0.001 24.0 2.4 34 118-151 59-92 (128)
332 PF02677 DUF208: Uncharacteriz 30.2 96 0.0021 25.1 4.3 41 109-155 4-55 (176)
333 cd02430 PTH2 Peptidyl-tRNA hyd 29.6 2.1E+02 0.0045 21.4 5.8 43 124-168 39-84 (115)
334 PRK11033 zntA zinc/cadmium/mer 29.4 1E+02 0.0023 30.1 5.2 42 117-160 568-609 (741)
335 COG1941 FrhG Coenzyme F420-red 29.1 2.5E+02 0.0055 24.0 6.8 26 101-126 3-28 (247)
336 PRK15122 magnesium-transportin 28.8 1.1E+02 0.0023 30.9 5.2 35 121-155 554-588 (903)
337 COG3593 Predicted ATP-dependen 28.6 69 0.0015 30.7 3.7 49 119-169 411-460 (581)
338 PRK04322 peptidyl-tRNA hydrola 28.5 2.3E+02 0.005 21.0 5.9 43 124-168 37-82 (113)
339 PRK10517 magnesium-transportin 28.5 1.1E+02 0.0023 30.9 5.2 35 121-155 554-588 (902)
340 TIGR01524 ATPase-IIIB_Mg magne 28.3 1.1E+02 0.0024 30.6 5.2 35 121-155 519-553 (867)
341 TIGR01689 EcbF-BcbF capsule bi 27.9 1.8E+02 0.0038 22.1 5.3 39 120-160 27-80 (126)
342 PF01981 PTH2: Peptidyl-tRNA h 27.9 2E+02 0.0042 21.1 5.4 43 124-168 40-85 (116)
343 PF02114 Phosducin: Phosducin; 27.9 1.7E+02 0.0038 25.0 5.8 41 100-142 146-186 (265)
344 TIGR01616 nitro_assoc nitrogen 27.8 1.8E+02 0.0039 22.0 5.3 45 104-155 3-51 (126)
345 TIGR01544 HAD-SF-IE haloacid d 27.8 1.3E+02 0.0029 26.0 5.1 35 121-155 125-159 (277)
346 TIGR00035 asp_race aspartate r 27.7 1.2E+02 0.0027 24.7 4.8 43 118-164 60-103 (229)
347 PF01106 NifU: NifU-like domai 27.7 1.9E+02 0.0042 19.3 5.1 32 84-119 14-47 (68)
348 TIGR01672 AphA HAD superfamily 27.7 65 0.0014 27.1 3.1 86 77-164 63-165 (237)
349 TIGR02253 CTE7 HAD superfamily 27.6 1E+02 0.0022 24.4 4.1 36 120-155 97-132 (221)
350 PF01408 GFO_IDH_MocA: Oxidore 27.6 2.1E+02 0.0045 20.1 5.5 32 132-167 24-55 (120)
351 PRK10017 colanic acid biosynth 27.6 4.3E+02 0.0093 24.1 8.6 65 100-165 234-314 (426)
352 PF01380 SIS: SIS domain SIS d 27.6 1.4E+02 0.003 21.3 4.6 45 119-168 66-110 (131)
353 PRK00192 mannosyl-3-phosphogly 27.6 1.7E+02 0.0037 24.4 5.6 45 122-168 26-70 (273)
354 PRK08244 hypothetical protein; 27.5 61 0.0013 29.5 3.1 36 70-107 391-426 (493)
355 TIGR01511 ATPase-IB1_Cu copper 27.3 1.2E+02 0.0027 28.5 5.2 39 119-159 407-445 (562)
356 cd01467 vWA_BatA_type VWA BatA 27.2 2.3E+02 0.005 21.4 6.0 39 127-167 126-178 (180)
357 cd03421 SirA_like_N SirA_like_ 27.0 1.8E+02 0.0039 18.8 5.0 49 105-160 2-52 (67)
358 TIGR01489 DKMTPPase-SF 2,3-dik 26.8 1.2E+02 0.0027 22.9 4.4 35 121-155 76-110 (188)
359 cd03024 DsbA_FrnE DsbA family, 26.7 1.9E+02 0.0041 22.5 5.5 25 106-130 3-27 (201)
360 PF12687 DUF3801: Protein of u 26.7 1.3E+02 0.0029 24.7 4.7 37 131-169 31-67 (204)
361 TIGR02765 crypto_DASH cryptoch 26.6 1.2E+02 0.0026 27.3 4.8 37 119-155 60-96 (429)
362 PRK10513 sugar phosphate phosp 26.4 3E+02 0.0065 22.5 6.9 35 121-155 24-58 (270)
363 COG0821 gcpE 1-hydroxy-2-methy 25.5 3.3E+02 0.0071 24.6 7.1 60 101-166 21-81 (361)
364 cd08573 GDPD_GDE1 Glycerophosp 25.3 1.8E+02 0.0039 24.4 5.4 38 124-165 219-256 (258)
365 PF03960 ArsC: ArsC family; I 25.2 65 0.0014 23.3 2.4 56 109-173 3-62 (110)
366 TIGR01522 ATPase-IIA2_Ca golgi 24.6 1.4E+02 0.003 29.9 5.2 36 120-155 531-566 (884)
367 PRK13222 phosphoglycolate phos 24.2 1.4E+02 0.003 23.5 4.4 37 119-155 95-131 (226)
368 KOG0259 Tyrosine aminotransfer 24.1 1.4E+02 0.0031 27.5 4.7 34 129-166 196-239 (447)
369 TIGR01512 ATPase-IB2_Cd heavy 23.9 1.4E+02 0.003 27.9 4.9 37 119-155 364-401 (536)
370 PRK13600 putative ribosomal pr 23.8 1.2E+02 0.0026 21.5 3.4 53 122-177 18-74 (84)
371 cd03053 GST_N_Phi GST_N family 23.8 1.6E+02 0.0035 18.9 4.0 57 104-167 2-60 (76)
372 PF01297 TroA: Periplasmic sol 23.8 1.3E+02 0.0028 24.9 4.2 46 119-167 185-231 (256)
373 PF02244 Propep_M14: Carboxype 23.7 1.4E+02 0.003 19.7 3.6 30 135-166 36-65 (74)
374 PRK04247 hypothetical protein; 23.7 4.6E+02 0.01 22.3 8.4 78 85-166 158-236 (238)
375 PRK13601 putative L7Ae-like ri 23.5 1.1E+02 0.0024 21.5 3.2 49 124-175 15-67 (82)
376 PLN02640 glucose-6-phosphate 1 23.5 3.7E+02 0.0081 25.9 7.5 69 73-143 62-131 (573)
377 cd00859 HisRS_anticodon HisRS 23.5 2.2E+02 0.0047 18.4 6.6 47 118-166 13-60 (91)
378 cd01451 vWA_Magnesium_chelatas 23.4 1.9E+02 0.0042 22.3 5.0 44 123-168 122-169 (178)
379 cd00515 HAM1 NTPase/HAM1. Thi 23.3 99 0.0021 24.8 3.3 59 122-184 11-83 (183)
380 TIGR01670 YrbI-phosphatas 3-de 23.2 1.5E+02 0.0033 22.5 4.3 31 125-155 36-66 (154)
381 TIGR01525 ATPase-IB_hvy heavy 23.2 1.7E+02 0.0037 27.4 5.3 38 118-155 385-423 (556)
382 cd03049 GST_N_3 GST_N family, 23.1 1.8E+02 0.0039 18.7 4.1 55 106-168 3-59 (73)
383 TIGR01686 FkbH FkbH-like domai 23.1 3.1E+02 0.0066 23.6 6.6 35 119-153 33-67 (320)
384 TIGR01517 ATPase-IIB_Ca plasma 23.1 1.4E+02 0.003 30.1 4.9 35 121-155 583-617 (941)
385 TIGR00591 phr2 photolyase PhrI 22.9 1.6E+02 0.0035 26.7 5.0 37 119-155 77-113 (454)
386 cd01481 vWA_collagen_alpha3-VI 22.9 1.8E+02 0.0039 22.5 4.6 33 121-153 121-155 (165)
387 TIGR03143 AhpF_homolog putativ 22.6 1.9E+02 0.0042 27.0 5.5 43 99-143 365-407 (555)
388 PRK10826 2-deoxyglucose-6-phos 22.6 1.4E+02 0.003 23.8 4.0 36 120-155 95-130 (222)
389 PRK09628 oorB 2-oxoglutarate-a 22.5 68 0.0015 27.6 2.3 25 106-131 13-37 (277)
390 cd01460 vWA_midasin VWA_Midasi 22.1 92 0.002 26.8 3.0 37 126-164 187-242 (266)
391 TIGR03609 S_layer_CsaB polysac 22.1 4.7E+02 0.01 21.8 7.4 55 100-155 172-230 (298)
392 TIGR03333 salvage_mtnX 2-hydro 22.0 2.3E+02 0.005 22.6 5.3 36 120-155 73-108 (214)
393 PRK13288 pyrophosphatase PpaX; 22.0 1.7E+02 0.0037 23.1 4.5 37 119-155 84-120 (214)
394 cd01473 vWA_CTRP CTRP for CS 21.8 1.2E+02 0.0026 24.2 3.6 31 121-151 127-159 (192)
395 TIGR01523 ATPase-IID_K-Na pota 21.8 1.6E+02 0.0035 30.2 5.1 34 122-155 651-684 (1053)
396 cd05710 SIS_1 A subgroup of th 21.7 98 0.0021 22.6 2.8 32 118-149 59-90 (120)
397 PF12689 Acid_PPase: Acid Phos 21.6 1.7E+02 0.0038 23.3 4.4 37 121-159 49-86 (169)
398 PF10790 DUF2604: Protein of U 21.5 86 0.0019 21.6 2.1 29 67-95 27-55 (76)
399 PF01075 Glyco_transf_9: Glyco 21.5 2.5E+02 0.0055 22.5 5.5 45 99-144 104-148 (247)
400 TIGR01664 DNA-3'-Pase DNA 3'-p 21.4 2.2E+02 0.0049 22.1 4.9 39 120-160 45-95 (166)
401 PF02786 CPSase_L_D2: Carbamoy 21.4 96 0.0021 25.4 2.9 37 126-166 6-45 (211)
402 TIGR02949 anti_SigH_actin anti 21.0 91 0.002 21.8 2.4 23 110-132 37-59 (84)
403 PRK08674 bifunctional phosphog 20.9 2.8E+02 0.0061 24.1 5.9 47 101-155 79-125 (337)
404 COG0415 PhrB Deoxyribodipyrimi 20.8 1.9E+02 0.0042 26.9 5.0 37 119-155 54-90 (461)
405 PLN02382 probable sucrose-phos 20.8 2.4E+02 0.0052 25.6 5.6 46 118-165 30-77 (413)
406 PLN02770 haloacid dehalogenase 20.7 1.8E+02 0.0038 23.9 4.4 36 120-155 111-146 (248)
407 TIGR00067 glut_race glutamate 20.6 2.7E+02 0.0058 23.4 5.5 39 117-155 44-85 (251)
408 cd03058 GST_N_Tau GST_N family 20.5 1.6E+02 0.0035 19.0 3.4 55 106-167 3-57 (74)
409 TIGR01484 HAD-SF-IIB HAD-super 20.5 3.4E+02 0.0073 21.1 5.9 46 120-169 20-65 (204)
410 PF10589 NADH_4Fe-4S: NADH-ubi 20.4 21 0.00044 22.4 -1.0 22 110-131 17-38 (46)
411 TIGR01454 AHBA_synth_RP 3-amin 20.3 1.7E+02 0.0037 22.9 4.1 37 119-155 77-113 (205)
412 PRK14988 GMP/IMP nucleotidase; 20.2 1.8E+02 0.0039 23.6 4.3 36 120-155 96-131 (224)
413 TIGR01422 phosphonatase phosph 20.2 1.5E+02 0.0033 24.1 3.9 36 120-155 102-137 (253)
414 TIGR01261 hisB_Nterm histidino 20.0 1.8E+02 0.0038 22.6 4.0 42 120-163 32-89 (161)
No 1
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=2.6e-24 Score=170.26 Aligned_cols=106 Identities=21% Similarity=0.274 Sum_probs=101.2
Q ss_pred CCCCCCCCcCCeEEECCCCCEEecccccccCCCeEEEEEEcCCCCcchHHHHHHHHHHHHHhhhCCcEEEEEeCCCHHHH
Q 029880 68 FPANVGDLLGDFSIFTAAGEPVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKA 147 (186)
Q Consensus 68 ~~l~~G~~aPdf~L~d~~G~~vsLsdl~~~~~g~vvLvffr~~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~d~~e~~ 147 (186)
..+++|+.+|||+|++.+|+.|+|+|+. ++++||+||+..++|.|..|+..+++.+++|++.|+.|||||.|+++..
T Consensus 2 ~~l~~G~~aPdF~Lp~~~g~~v~Lsd~~---Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~a~V~GIS~Ds~~~~ 78 (157)
T COG1225 2 MMLKVGDKAPDFELPDQDGETVSLSDLR---GKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLGAVVLGISPDSPKSH 78 (157)
T ss_pred CcCCCCCcCCCeEeecCCCCEEehHHhc---CCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHH
Confidence 4689999999999999999999999996 4589999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCeeeeEEEEcCCCCcccceeece
Q 029880 148 QILAERVGNVFITQVLSLPLEVTPSLFKFHV 178 (186)
Q Consensus 148 ~~f~~~~~~~l~fpvL~Dp~~~~~~~f~~~~ 178 (186)
++|+++++ ++||+|+|+++.++++||+-.
T Consensus 79 ~~F~~k~~--L~f~LLSD~~~~v~~~ygv~~ 107 (157)
T COG1225 79 KKFAEKHG--LTFPLLSDEDGEVAEAYGVWG 107 (157)
T ss_pred HHHHHHhC--CCceeeECCcHHHHHHhCccc
Confidence 99999999 999999999999999999743
No 2
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=99.89 E-value=4.8e-23 Score=157.53 Aligned_cols=99 Identities=31% Similarity=0.451 Sum_probs=93.0
Q ss_pred CcCCeEEECCCCCEEecccccccCCCeEEEEEEcCCCCcchHHHHHHHHHHHHHhhhCCcEEEEEeCCCHHHHHHHHHHh
Q 029880 75 LLGDFSIFTAAGEPVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKAQILAERV 154 (186)
Q Consensus 75 ~aPdf~L~d~~G~~vsLsdl~~~~~g~vvLvffr~~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~d~~e~~~~f~~~~ 154 (186)
.+|+|++.|.+|+.++++++.+ ++++||+|||++|||+|++|++.|+++++++++.|+.+|+|+.++.+.+++|++++
T Consensus 1 ~~p~f~l~~~~g~~~~l~~~~~--~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~~~~~~~~~~~ 78 (149)
T cd02970 1 TAPDFELPDAGGETVTLSALLG--EGPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPESPEKLEAFDKGK 78 (149)
T ss_pred CCCCccccCCCCCEEchHHHhc--CCCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCHHHHHHHHHhc
Confidence 4799999999999999999863 46899999999999999999999999999999999999999999998888999999
Q ss_pred CCeeeeEEEEcCCCCcccceeec
Q 029880 155 GNVFITQVLSLPLEVTPSLFKFH 177 (186)
Q Consensus 155 ~~~l~fpvL~Dp~~~~~~~f~~~ 177 (186)
+ ++||+++|+++.+.+.||+.
T Consensus 79 ~--~~~p~~~D~~~~~~~~~g~~ 99 (149)
T cd02970 79 F--LPFPVYADPDRKLYRALGLV 99 (149)
T ss_pred C--CCCeEEECCchhHHHHcCce
Confidence 9 99999999999999999984
No 3
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=99.88 E-value=1.3e-22 Score=150.87 Aligned_cols=100 Identities=28% Similarity=0.455 Sum_probs=92.2
Q ss_pred CCCCcCCeEEECCCCCEEecccccccCCCeEEEEEEcCC-CCcchHHHHHHHHHHHHHhhhCCcEEEEEeCCCHHHHHHH
Q 029880 72 VGDLLGDFSIFTAAGEPVLFKDLWDQNEGVAVVALLRHF-GCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKAQIL 150 (186)
Q Consensus 72 ~G~~aPdf~L~d~~G~~vsLsdl~~~~~g~vvLvffr~~-wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~d~~e~~~~f 150 (186)
+|+++|+|+++|.+|+.++|+++ +|+.+|++||++ |||.|..+++.|++++++++++|+++|+|+.++.+.+++|
T Consensus 1 vG~~~P~f~l~~~~g~~~~l~~l----~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~ 76 (124)
T PF00578_consen 1 VGDKAPDFTLTDSDGKTVSLSDL----KGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDPEEIKQF 76 (124)
T ss_dssp TTSBGGCEEEETTTSEEEEGGGG----TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHHHHHHH
T ss_pred CcCCCCCcEeECCCCCEEEHHHH----CCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccccccchhhh
Confidence 69999999999999999999999 345555555666 9999999999999999999999999999999999999999
Q ss_pred HHHhCCeeeeEEEEcCCCCcccceeec
Q 029880 151 AERVGNVFITQVLSLPLEVTPSLFKFH 177 (186)
Q Consensus 151 ~~~~~~~l~fpvL~Dp~~~~~~~f~~~ 177 (186)
.++++ ++||+++|+++.+.+.|++.
T Consensus 77 ~~~~~--~~~~~~~D~~~~~~~~~~~~ 101 (124)
T PF00578_consen 77 LEEYG--LPFPVLSDPDGELAKAFGIE 101 (124)
T ss_dssp HHHHT--CSSEEEEETTSHHHHHTTCE
T ss_pred hhhhc--cccccccCcchHHHHHcCCc
Confidence 99999 99999999999999988775
No 4
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=99.88 E-value=2.5e-22 Score=154.42 Aligned_cols=104 Identities=22% Similarity=0.325 Sum_probs=95.1
Q ss_pred CCCCCCcCCeEEECCCCCEEecccccccCCCeEEEEEEcCCCCcchHHHHHHHHHHHHHhhhCCcEEEEEeCCCHHHHHH
Q 029880 70 ANVGDLLGDFSIFTAAGEPVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKAQI 149 (186)
Q Consensus 70 l~~G~~aPdf~L~d~~G~~vsLsdl~~~~~g~vvLvffr~~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~d~~e~~~~ 149 (186)
+++|+.+|+|.+.|.+|+.++|+++.+ ++++||+|||++||+.|..+++.|+++++++++.|+++|+|+.++.+.+++
T Consensus 1 ~~~G~~~p~~~l~~~~g~~v~l~~~~g--~k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~ 78 (149)
T cd03018 1 LEVGDKAPDFELPDQNGQEVRLSEFRG--RKPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVDSPFSLRA 78 (149)
T ss_pred CCCCCcCCCcEecCCCCCEEeHHHHcC--CCeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCCCHHHHHH
Confidence 468999999999999999999999952 146777777899999999999999999999999999999999999999999
Q ss_pred HHHHhCCeeeeEEEEcCC--CCcccceeec
Q 029880 150 LAERVGNVFITQVLSLPL--EVTPSLFKFH 177 (186)
Q Consensus 150 f~~~~~~~l~fpvL~Dp~--~~~~~~f~~~ 177 (186)
|+++++ ++||+++|++ +.+.+.|++.
T Consensus 79 ~~~~~~--~~~~~~~D~~~~~~~~~~~g~~ 106 (149)
T cd03018 79 WAEENG--LTFPLLSDFWPHGEVAKAYGVF 106 (149)
T ss_pred HHHhcC--CCceEecCCCchhHHHHHhCCc
Confidence 999999 9999999987 8888888876
No 5
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=99.86 E-value=1.1e-21 Score=150.84 Aligned_cols=101 Identities=26% Similarity=0.388 Sum_probs=92.7
Q ss_pred CCCCCcCCeEEEC--CCCCEEecccccccCCCeEEEEEEcCC-CCcchHHHHHHHHHHHHHhhhCCcEEEEEeCCCHHHH
Q 029880 71 NVGDLLGDFSIFT--AAGEPVLFKDLWDQNEGVAVVALLRHF-GCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKA 147 (186)
Q Consensus 71 ~~G~~aPdf~L~d--~~G~~vsLsdl~~~~~g~vvLvffr~~-wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~d~~e~~ 147 (186)
++|+.+|+|++++ .+|+.++|+++ +|+++|++||++ |||+|+.++|.|+++++++++.|+.+|+|+.++...+
T Consensus 1 k~G~~~P~~~~~~~~~~g~~~~l~~~----~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~ 76 (146)
T PF08534_consen 1 KVGDKAPDFSLKDLDLDGKPVSLSDF----KGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPV 76 (146)
T ss_dssp STTSB--CCEEEEEETTSEEEEGGGG----TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHH
T ss_pred CCCCCCCCeEEEeecCCCCEecHHHh----CCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHH
Confidence 5799999999966 99999999997 678899999999 9999999999999999999999999999999988779
Q ss_pred HHHHHHhCCeeeeEEEEcCCCCcccceeec
Q 029880 148 QILAERVGNVFITQVLSLPLEVTPSLFKFH 177 (186)
Q Consensus 148 ~~f~~~~~~~l~fpvL~Dp~~~~~~~f~~~ 177 (186)
++|+++++ ++||++.|+++.+.+.|++.
T Consensus 77 ~~~~~~~~--~~~~~~~D~~~~~~~~~~~~ 104 (146)
T PF08534_consen 77 REFLKKYG--INFPVLSDPDGALAKALGVT 104 (146)
T ss_dssp HHHHHHTT--TTSEEEEETTSHHHHHTTCE
T ss_pred HHHHHhhC--CCceEEechHHHHHHHhCCc
Confidence 99999999 99999999999999999866
No 6
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=99.86 E-value=2.5e-21 Score=150.63 Aligned_cols=104 Identities=24% Similarity=0.333 Sum_probs=94.8
Q ss_pred CCCCCCCCcCCeEEECCCCCEEecccccccCCCeEEEEEEcCC-CCcchHHHHHHHHHHHHHhhhCCcEEEEEeCCCHHH
Q 029880 68 FPANVGDLLGDFSIFTAAGEPVLFKDLWDQNEGVAVVALLRHF-GCPCCWELASALKESKARFDSAGVKLIAVGVGTPNK 146 (186)
Q Consensus 68 ~~l~~G~~aPdf~L~d~~G~~vsLsdl~~~~~g~vvLvffr~~-wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~d~~e~ 146 (186)
..+.+|+.+|+|++.|.+|+.++|+++ +|+++|++||++ |||.|..+++.|+++++++++.|+++|+|+.|+.+.
T Consensus 2 ~~~~~g~~~p~f~l~~~~G~~~~l~~~----~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d~~~~ 77 (154)
T PRK09437 2 NPLKAGDIAPKFSLPDQDGEQVSLTDF----QGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTDKPEK 77 (154)
T ss_pred CcCCCCCcCCCcEeeCCCCCEEeHHHh----CCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHH
Confidence 357889999999999999999999998 456677777765 899999999999999999999999999999999999
Q ss_pred HHHHHHHhCCeeeeEEEEcCCCCcccceeec
Q 029880 147 AQILAERVGNVFITQVLSLPLEVTPSLFKFH 177 (186)
Q Consensus 147 ~~~f~~~~~~~l~fpvL~Dp~~~~~~~f~~~ 177 (186)
+++|+++++ ++||+++|+++.+.+.||+.
T Consensus 78 ~~~~~~~~~--~~~~~l~D~~~~~~~~~gv~ 106 (154)
T PRK09437 78 LSRFAEKEL--LNFTLLSDEDHQVAEQFGVW 106 (154)
T ss_pred HHHHHHHhC--CCCeEEECCCchHHHHhCCC
Confidence 999999999 99999999999999888864
No 7
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=99.85 E-value=2.3e-21 Score=152.78 Aligned_cols=102 Identities=20% Similarity=0.263 Sum_probs=95.5
Q ss_pred CCCCcCCeEEECCC---CCEEecccccccCCCeEEEEEEcCCCCcchHHH-HHHHHHHHHHhhhCCc-EEEEEeCCCHHH
Q 029880 72 VGDLLGDFSIFTAA---GEPVLFKDLWDQNEGVAVVALLRHFGCPCCWEL-ASALKESKARFDSAGV-KLIAVGVGTPNK 146 (186)
Q Consensus 72 ~G~~aPdf~L~d~~---G~~vsLsdl~~~~~g~vvLvffr~~wCp~C~~e-l~~L~~l~~ef~~~Gv-~vVaIs~d~~e~ 146 (186)
+|+.+|+|+|.+.+ |+.++|+++.+ ++++||+|||+.|||.|..| ++.|++.+++|++.|+ .|++||.|+.+.
T Consensus 1 vG~~aPdF~l~~~~~~~g~~v~L~~~~~--gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~D~~~~ 78 (155)
T cd03013 1 VGDKLPNVTLFEYVPGPPNPVNLSELFK--GKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSVNDPFV 78 (155)
T ss_pred CCCcCCCeEeeeeccCCCceeeHHHHhC--CCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEECCCHHH
Confidence 59999999999986 99999999533 56999999999999999999 9999999999999999 699999999999
Q ss_pred HHHHHHHhCCee--eeEEEEcCCCCcccceeec
Q 029880 147 AQILAERVGNVF--ITQVLSLPLEVTPSLFKFH 177 (186)
Q Consensus 147 ~~~f~~~~~~~l--~fpvL~Dp~~~~~~~f~~~ 177 (186)
.++|+++++ + +||+|+|+++.+.+.||+-
T Consensus 79 ~~~~~~~~~--~~~~f~lLsD~~~~~~~~ygv~ 109 (155)
T cd03013 79 MKAWGKALG--AKDKIRFLADGNGEFTKALGLT 109 (155)
T ss_pred HHHHHHhhC--CCCcEEEEECCCHHHHHHcCCC
Confidence 999999999 8 8999999999999999985
No 8
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=99.84 E-value=8.5e-21 Score=150.89 Aligned_cols=103 Identities=15% Similarity=0.125 Sum_probs=93.1
Q ss_pred cCCCCCCCCcCCeEEECCCCCEEecccccccCCCeEEEEEEcCCC-CcchHHHHHHHHHHHHHhhhCCcEEEEEeCCCHH
Q 029880 67 EFPANVGDLLGDFSIFTAAGEPVLFKDLWDQNEGVAVVALLRHFG-CPCCWELASALKESKARFDSAGVKLIAVGVGTPN 145 (186)
Q Consensus 67 ~~~l~~G~~aPdf~L~d~~G~~vsLsdl~~~~~g~vvLvffr~~w-Cp~C~~el~~L~~l~~ef~~~Gv~vVaIs~d~~e 145 (186)
...+.+|+.+|+|++.|.+|+.++|+++ +|+++|++||++| ||+|..|++.|+++++++ .|++||+|+.|+++
T Consensus 15 ~~~~~~G~~~P~f~l~~~~g~~v~l~~~----~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~--~~~~vv~vs~D~~~ 88 (167)
T PRK00522 15 GSLPQVGDKAPDFTLVANDLSDVSLADF----AGKRKVLNIFPSIDTGVCATSVRKFNQEAAEL--DNTVVLCISADLPF 88 (167)
T ss_pred CCCCCCCCCCCCeEEEcCCCcEEehHHh----CCCEEEEEEEcCCCCCccHHHHHHHHHHHHHc--CCcEEEEEeCCCHH
Confidence 4467889999999999999999999998 5678888889998 999999999999999999 39999999999998
Q ss_pred HHHHHHHHhCCeee-eEEEEc-CCCCcccceeec
Q 029880 146 KAQILAERVGNVFI-TQVLSL-PLEVTPSLFKFH 177 (186)
Q Consensus 146 ~~~~f~~~~~~~l~-fpvL~D-p~~~~~~~f~~~ 177 (186)
.+++|+++++ ++ |++++| +++.+.+.||+.
T Consensus 89 ~~~~f~~~~~--~~~~~~lsD~~~~~~~~~~gv~ 120 (167)
T PRK00522 89 AQKRFCGAEG--LENVITLSDFRDHSFGKAYGVA 120 (167)
T ss_pred HHHHHHHhCC--CCCceEeecCCccHHHHHhCCe
Confidence 8999999999 87 799999 566888899875
No 9
>PTZ00256 glutathione peroxidase; Provisional
Probab=99.84 E-value=1e-20 Score=152.49 Aligned_cols=94 Identities=11% Similarity=0.115 Sum_probs=80.0
Q ss_pred CCCCcCCeEEECCCCCEEecccccccCCCeEEEEEEcCCCCcchHHHHHHHHHHHHHhhhCCcEEEEEeCC--------C
Q 029880 72 VGDLLGDFSIFTAAGEPVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVG--------T 143 (186)
Q Consensus 72 ~G~~aPdf~L~d~~G~~vsLsdl~~~~~g~vvLvffr~~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~d--------~ 143 (186)
.++.+|+|+++|.+|+.++|+++. ++++||+++|++|||+|+.|+|.|++++++|+++|+.||+|+.+ +
T Consensus 16 ~~~~~p~f~l~d~~G~~vsLs~~~---Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~~~~~~~~~~ 92 (183)
T PTZ00256 16 PTKSFFEFEAIDIDGQLVQLSKFK---GKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQGLEILAFPCNQFMEQEPWD 92 (183)
T ss_pred CCCcccceEeEcCCCCEEeHHHhC---CCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEecccccccCCCC
Confidence 367799999999999999999993 33466777799999999999999999999999999999999964 3
Q ss_pred HHHHHHHH-HHhCCeeeeEEEEc--CCCCc
Q 029880 144 PNKAQILA-ERVGNVFITQVLSL--PLEVT 170 (186)
Q Consensus 144 ~e~~~~f~-~~~~~~l~fpvL~D--p~~~~ 170 (186)
.+.+++|. ++++ ++||+++| .++..
T Consensus 93 ~~~~~~f~~~~~~--~~fpv~~d~d~~g~~ 120 (183)
T PTZ00256 93 EPEIKEYVQKKFN--VDFPLFQKIEVNGEN 120 (183)
T ss_pred HHHHHHHHHHhcC--CCCCCceEEecCCCC
Confidence 46788886 4789 99999966 55543
No 10
>PRK13190 putative peroxiredoxin; Provisional
Probab=99.84 E-value=9.8e-21 Score=155.16 Aligned_cols=104 Identities=18% Similarity=0.203 Sum_probs=90.0
Q ss_pred CCCCCCCcCCeEEECCCCCEEecccccccCCCeEEEEEEcCCCCcchHHHHHHHHHHHHHhhhCCcEEEEEeCCCHHHHH
Q 029880 69 PANVGDLLGDFSIFTAAGEPVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKAQ 148 (186)
Q Consensus 69 ~l~~G~~aPdf~L~d~~G~~vsLsdl~~~~~g~vvLvffr~~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~d~~e~~~ 148 (186)
++.+|+.+|+|++.+..| .++|+++. ++++||+|||++|||.|..|++.|++++++|+++|++||+||.|+.+..+
T Consensus 1 ~~~vG~~aP~F~~~~~~g-~v~l~d~~---gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D~~~~~~ 76 (202)
T PRK13190 1 PVKLGQKAPDFTVNTTKG-PIDLSKYK---GKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDSIYSHI 76 (202)
T ss_pred CCCCCCCCCCcEEecCCC-cEeHHHhC---CCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHH
Confidence 367899999999999888 79999983 34577778999999999999999999999999999999999999987655
Q ss_pred HHH----HHhCCeeeeEEEEcCCCCcccceee
Q 029880 149 ILA----ERVGNVFITQVLSLPLEVTPSLFKF 176 (186)
Q Consensus 149 ~f~----~~~~~~l~fpvL~Dp~~~~~~~f~~ 176 (186)
+|+ ++++..++||+++|+++.+.+.||+
T Consensus 77 ~w~~~~~~~~g~~~~fPll~D~~~~ia~~ygv 108 (202)
T PRK13190 77 AWLRDIEERFGIKIPFPVIADIDKELAREYNL 108 (202)
T ss_pred HHHHhHHHhcCCCceEEEEECCChHHHHHcCC
Confidence 554 4555226899999999999999997
No 11
>PRK13599 putative peroxiredoxin; Provisional
Probab=99.84 E-value=9.5e-21 Score=156.98 Aligned_cols=102 Identities=15% Similarity=0.098 Sum_probs=90.9
Q ss_pred CCCCCcCCeEEECCCCCEEecccccccCCCeEEEEEEcCCCCcchHHHHHHHHHHHHHhhhCCcEEEEEeCCCHHHHHHH
Q 029880 71 NVGDLLGDFSIFTAAGEPVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKAQIL 150 (186)
Q Consensus 71 ~~G~~aPdf~L~d~~G~~vsLsdl~~~~~g~vvLvffr~~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~d~~e~~~~f 150 (186)
.+|+.+|+|++.+.+|+.+.++++. ++++||++||+.|||.|..|++.|++++++|+++|++|||||.|+.+..++|
T Consensus 3 ~~Gd~aPdF~l~t~~G~~~~~~~~~---Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D~~~~~~~w 79 (215)
T PRK13599 3 LLGEKFPSMEVVTTQGVKRLPEDYA---GKWFVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVDQVFSHIKW 79 (215)
T ss_pred CCCCCCCCCEeECCCCcEecHHHHC---CCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHH
Confidence 6899999999999999988888884 4467899999999999999999999999999999999999999998776665
Q ss_pred HH---H---hCCeeeeEEEEcCCCCcccceeec
Q 029880 151 AE---R---VGNVFITQVLSLPLEVTPSLFKFH 177 (186)
Q Consensus 151 ~~---~---~~~~l~fpvL~Dp~~~~~~~f~~~ 177 (186)
.+ + .+ ++||+++|+++.+++.||+.
T Consensus 80 ~~~i~~~~~~~--i~fPil~D~~~~va~~yg~~ 110 (215)
T PRK13599 80 VEWIKDNTNIA--IPFPVIADDLGKVSNQLGMI 110 (215)
T ss_pred HHhHHHhcCCC--CceeEEECCCchHHHHcCCC
Confidence 44 2 36 89999999999999999973
No 12
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=99.84 E-value=8.2e-21 Score=144.39 Aligned_cols=100 Identities=24% Similarity=0.313 Sum_probs=91.2
Q ss_pred CCcCCeEEECCCCCEEecccccccCCCeEEEEEEc-CCCCcchHHHHHHHHHHHHHhhhCCcEEEEEeCCCHHHHHHHHH
Q 029880 74 DLLGDFSIFTAAGEPVLFKDLWDQNEGVAVVALLR-HFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKAQILAE 152 (186)
Q Consensus 74 ~~aPdf~L~d~~G~~vsLsdl~~~~~g~vvLvffr-~~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~d~~e~~~~f~~ 152 (186)
+.+|+|++.|.+|+.++++++ +|+++|++|| +.|||.|..+++.|+++++++++.|+++|+|+.++.+.+++|++
T Consensus 1 ~~~p~f~l~~~~g~~~~l~~~----~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~ 76 (140)
T cd03017 1 DKAPDFTLPDQDGETVSLSDL----RGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSVESHAKFAE 76 (140)
T ss_pred CCCCCccccCCCCCEEeHHHh----CCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHH
Confidence 478999999999999999999 4566666666 68999999999999999999999999999999999999999999
Q ss_pred HhCCeeeeEEEEcCCCCcccceeeceE
Q 029880 153 RVGNVFITQVLSLPLEVTPSLFKFHVT 179 (186)
Q Consensus 153 ~~~~~l~fpvL~Dp~~~~~~~f~~~~~ 179 (186)
+++ ++||+++|+++.+.+.||+..+
T Consensus 77 ~~~--~~~~~l~D~~~~~~~~~gv~~~ 101 (140)
T cd03017 77 KYG--LPFPLLSDPDGKLAKAYGVWGE 101 (140)
T ss_pred HhC--CCceEEECCccHHHHHhCCccc
Confidence 999 9999999999999999987654
No 13
>PTZ00056 glutathione peroxidase; Provisional
Probab=99.84 E-value=1.2e-20 Score=154.44 Aligned_cols=89 Identities=10% Similarity=0.186 Sum_probs=83.2
Q ss_pred CCCCCcCCeEEECCCCCEEecccccccCCCeEEEEEEcCCCCcchHHHHHHHHHHHHHhhhCCcEEEEEeC--------C
Q 029880 71 NVGDLLGDFSIFTAAGEPVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGV--------G 142 (186)
Q Consensus 71 ~~G~~aPdf~L~d~~G~~vsLsdl~~~~~g~vvLvffr~~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~--------d 142 (186)
..|..+|+|+++|.+|+.++|+++ +|+++|++||++|||+|+.|+|.|++++++++++|++||+|++ +
T Consensus 14 ~~~~~~pdf~l~d~~G~~vsL~~~----kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~~~~~~e~d 89 (199)
T PTZ00056 14 ELRKSIYDYTVKTLEGTTVPMSSL----KNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTSQFLNQEFP 89 (199)
T ss_pred hcCCCCCceEEECCCCCEEeHHHh----CCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEecchhccCCCCC
Confidence 557789999999999999999999 5789999999999999999999999999999999999999986 5
Q ss_pred CHHHHHHHHHHhCCeeeeEEEEc
Q 029880 143 TPNKAQILAERVGNVFITQVLSL 165 (186)
Q Consensus 143 ~~e~~~~f~~~~~~~l~fpvL~D 165 (186)
+.+.+++|+++++ ++||+++|
T Consensus 90 ~~e~~~~f~~~~~--~~fpvl~d 110 (199)
T PTZ00056 90 NTKDIRKFNDKNK--IKYNFFEP 110 (199)
T ss_pred CHHHHHHHHHHcC--CCceeeee
Confidence 6788999999999 99999986
No 14
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=99.84 E-value=1e-20 Score=153.04 Aligned_cols=102 Identities=17% Similarity=0.101 Sum_probs=88.5
Q ss_pred CCCCCcCCeEEEC-CCCC--EEecccccccCCCeEEEEEEcCCCCcchHHHHHHHHHHHHHhhhCCcEEEEEeCCCHHHH
Q 029880 71 NVGDLLGDFSIFT-AAGE--PVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKA 147 (186)
Q Consensus 71 ~~G~~aPdf~L~d-~~G~--~vsLsdl~~~~~g~vvLvffr~~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~d~~e~~ 147 (186)
.+|+.+|+|++.+ .+|+ .++++++. ++++||+||+++|||.|..|++.|++++++|++.|++||+||.|+.+..
T Consensus 3 ~~G~~aP~f~l~~~~~g~~~~~sl~d~~---Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D~~~~~ 79 (187)
T TIGR03137 3 LINTEIKPFKATAYHNGEFVEVTDEDVK---GKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTDTHFVH 79 (187)
T ss_pred ccCCcCCCcEeeeccCCceeEecHHHHC---CCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCCCHHHH
Confidence 5799999999998 5787 68888983 3355555555999999999999999999999999999999999999888
Q ss_pred HHHHHHh----CCeeeeEEEEcCCCCcccceeec
Q 029880 148 QILAERV----GNVFITQVLSLPLEVTPSLFKFH 177 (186)
Q Consensus 148 ~~f~~~~----~~~l~fpvL~Dp~~~~~~~f~~~ 177 (186)
++|++.. + ++||+++|+++.+.+.||+.
T Consensus 80 ~~~~~~~~~~~~--l~fpllsD~~~~~a~~~gv~ 111 (187)
T TIGR03137 80 KAWHDTSEAIGK--ITYPMLGDPTGVLTRNFGVL 111 (187)
T ss_pred HHHHhhhhhccC--cceeEEECCccHHHHHhCCc
Confidence 8887654 6 89999999999999999874
No 15
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=99.84 E-value=1e-20 Score=154.98 Aligned_cols=101 Identities=21% Similarity=0.264 Sum_probs=90.5
Q ss_pred CCCCcCCeEEECCCCCEEecccccccCCCeEEEEEEcCCCCcchHHHHHHHHHHHHHhhhCCcEEEEEeCCCHHHHHHHH
Q 029880 72 VGDLLGDFSIFTAAGEPVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKAQILA 151 (186)
Q Consensus 72 ~G~~aPdf~L~d~~G~~vsLsdl~~~~~g~vvLvffr~~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~d~~e~~~~f~ 151 (186)
+|+.+|+|++.+.+| .++|+++.+ ++++||++||+.|||.|..|++.|++++++|+++|++||+||.|+.+..++|.
T Consensus 1 vG~~aP~F~~~~~~g-~~~l~d~~g--~k~vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D~~~~~~~~~ 77 (203)
T cd03016 1 LGDTAPNFEADTTHG-PIKFHDYLG--DSWGILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVDSVESHIKWI 77 (203)
T ss_pred CcCCCCCeEEecCCC-cEeHHHHcC--CCEEEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHH
Confidence 589999999999988 589999852 24688889999999999999999999999999999999999999988777776
Q ss_pred HH------hCCeeeeEEEEcCCCCcccceeec
Q 029880 152 ER------VGNVFITQVLSLPLEVTPSLFKFH 177 (186)
Q Consensus 152 ~~------~~~~l~fpvL~Dp~~~~~~~f~~~ 177 (186)
+. .+ ++||+++|+++.+.+.||+.
T Consensus 78 ~~i~~~~~~~--~~fpil~D~~~~ia~~yg~~ 107 (203)
T cd03016 78 EDIEEYTGVE--IPFPIIADPDREVAKLLGMI 107 (203)
T ss_pred hhHHHhcCCC--CceeEEECchHHHHHHcCCc
Confidence 54 57 99999999999999999975
No 16
>PLN02412 probable glutathione peroxidase
Probab=99.83 E-value=1.8e-20 Score=149.20 Aligned_cols=96 Identities=15% Similarity=0.186 Sum_probs=83.0
Q ss_pred CCcCCeEEECCCCCEEecccccccCCCeEEEEEEcCCCCcchHHHHHHHHHHHHHhhhCCcEEEEEeCC--------CHH
Q 029880 74 DLLGDFSIFTAAGEPVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVG--------TPN 145 (186)
Q Consensus 74 ~~aPdf~L~d~~G~~vsLsdl~~~~~g~vvLvffr~~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~d--------~~e 145 (186)
+.+|+|+++|.+|+.++|+++ +|+++|++||++|||+|+.|++.|++++++|+++|+.||+|+.+ +.+
T Consensus 7 ~~~pdf~l~d~~G~~v~l~~~----~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~~~~~~~~~~~~ 82 (167)
T PLN02412 7 KSIYDFTVKDIGGNDVSLNQY----KGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQGFEILAFPCNQFLGQEPGSNE 82 (167)
T ss_pred CCCCceEEECCCCCEEeHHHh----CCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCCcEEEEecccccccCCCCCHH
Confidence 679999999999999999999 57999999999999999999999999999999999999999974 455
Q ss_pred HHHH-HHHHhCCeeeeEEEE--cCCC-Cccccee
Q 029880 146 KAQI-LAERVGNVFITQVLS--LPLE-VTPSLFK 175 (186)
Q Consensus 146 ~~~~-f~~~~~~~l~fpvL~--Dp~~-~~~~~f~ 175 (186)
.+++ |+++++ ++||+++ |+++ .....|+
T Consensus 83 ~~~~~~~~~~~--~~fpvl~~~d~~g~~~~~~~~ 114 (167)
T PLN02412 83 EIQQTVCTRFK--AEFPIFDKVDVNGKNTAPLYK 114 (167)
T ss_pred HHHHHHHHccC--CCCceEeEEeeCCCCCCHHHH
Confidence 5544 569999 9999998 4664 5555554
No 17
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=99.83 E-value=1.7e-20 Score=146.46 Aligned_cols=93 Identities=16% Similarity=0.259 Sum_probs=81.8
Q ss_pred cCCeEEECCCCCEEecccccccCCCeEEEEEEcCCCCcchHHHHHHHHHHHHHhhhCCcEEEEEeCC--------CHHHH
Q 029880 76 LGDFSIFTAAGEPVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVG--------TPNKA 147 (186)
Q Consensus 76 aPdf~L~d~~G~~vsLsdl~~~~~g~vvLvffr~~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~d--------~~e~~ 147 (186)
+|+|++.|.+|+.++|+++ +|++||++||++||| |+.|+|.|++++++++++|+.||+|+.+ +.+.+
T Consensus 2 ~~~f~l~d~~G~~v~l~~~----~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~ 76 (152)
T cd00340 2 IYDFSVKDIDGEPVSLSKY----KGKVLLIVNVASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPCNQFGGQEPGSNEEI 76 (152)
T ss_pred cceeEEECCCCCEEeHHHh----CCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCCCEEEEEeccCccccCCCCCHHHH
Confidence 6899999999999999999 578999999999999 9999999999999999999999999863 46789
Q ss_pred HHHHHH-hCCeeeeEEEEcC--CCC-ccccee
Q 029880 148 QILAER-VGNVFITQVLSLP--LEV-TPSLFK 175 (186)
Q Consensus 148 ~~f~~~-~~~~l~fpvL~Dp--~~~-~~~~f~ 175 (186)
++|+++ ++ ++||+++|. ++. ....|+
T Consensus 77 ~~f~~~~~~--~~fp~~~d~d~~~~~~~~~~~ 106 (152)
T cd00340 77 KEFCETNYG--VTFPMFAKIDVNGENAHPLYK 106 (152)
T ss_pred HHHHHHhcC--CCceeeeeEeccCCCCChHHH
Confidence 999987 89 999999874 333 444554
No 18
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=99.83 E-value=2.3e-20 Score=143.20 Aligned_cols=99 Identities=18% Similarity=0.206 Sum_probs=88.3
Q ss_pred CCCCCcCCeEEECCCCCEEecccccccCCCeEEEEEEcCCC-CcchHHHHHHHHHHHHHhhhCCcEEEEEeCCCHHHHHH
Q 029880 71 NVGDLLGDFSIFTAAGEPVLFKDLWDQNEGVAVVALLRHFG-CPCCWELASALKESKARFDSAGVKLIAVGVGTPNKAQI 149 (186)
Q Consensus 71 ~~G~~aPdf~L~d~~G~~vsLsdl~~~~~g~vvLvffr~~w-Cp~C~~el~~L~~l~~ef~~~Gv~vVaIs~d~~e~~~~ 149 (186)
++|+.+|+|++.|.+|+.++|+++ +|+.+|++||++| ||+|+.|++.|++++++++ |+.||+|+.|+.+.+++
T Consensus 1 ~~G~~aP~f~l~~~~g~~~~l~~~----~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~--~~~vi~Is~d~~~~~~~ 74 (143)
T cd03014 1 KVGDKAPDFTLVTSDLSEVSLADF----AGKVKVISVFPSIDTPVCATQTKRFNKEAAKLD--NTVVLTISADLPFAQKR 74 (143)
T ss_pred CCCCCCCCcEEECCCCcEEeHHHh----CCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcC--CCEEEEEECCCHHHHHH
Confidence 369999999999999999999998 4566677777776 7999999999999999983 89999999999999999
Q ss_pred HHHHhCCee-eeEEEEcCC-CCcccceeec
Q 029880 150 LAERVGNVF-ITQVLSLPL-EVTPSLFKFH 177 (186)
Q Consensus 150 f~~~~~~~l-~fpvL~Dp~-~~~~~~f~~~ 177 (186)
|.++++ + .||+++|++ +.+.+.||+.
T Consensus 75 ~~~~~~--~~~~~~l~D~~~~~~~~~~gv~ 102 (143)
T cd03014 75 WCGAEG--VDNVTTLSDFRDHSFGKAYGVL 102 (143)
T ss_pred HHHhcC--CCCceEeecCcccHHHHHhCCe
Confidence 999998 7 799999996 8888888874
No 19
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=99.83 E-value=6.2e-20 Score=154.21 Aligned_cols=91 Identities=15% Similarity=0.231 Sum_probs=83.1
Q ss_pred CCCCCCCcCCeEEECCCCCEEecccccccCCCeEEEEEEcCCCCcchHHHHHHHHHHHHHhhhCCcEEEEEeC-------
Q 029880 69 PANVGDLLGDFSIFTAAGEPVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGV------- 141 (186)
Q Consensus 69 ~l~~G~~aPdf~L~d~~G~~vsLsdl~~~~~g~vvLvffr~~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~------- 141 (186)
....|+.+|+|+++|.+|+.++|+++ +|+++|++||++|||+|+.|++.|++++++++++|++||+|+.
T Consensus 72 ~~~~g~~aPdF~l~d~~G~~vsLsd~----kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~d~~~~~e 147 (236)
T PLN02399 72 RAATEKSVHDFTVKDIDGKDVALSKF----KGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILAFPCNQFGGQE 147 (236)
T ss_pred chhcCCCCCceEEECCCCCEEeHHHh----CCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEEecccccccC
Confidence 34689999999999999999999999 5789999999999999999999999999999999999999996
Q ss_pred -CCHHHHHHHH-HHhCCeeeeEEEEc
Q 029880 142 -GTPNKAQILA-ERVGNVFITQVLSL 165 (186)
Q Consensus 142 -d~~e~~~~f~-~~~~~~l~fpvL~D 165 (186)
++.+++++|+ ++++ ++||++.|
T Consensus 148 ~~s~~ei~~f~~~~~g--~~fPvl~~ 171 (236)
T PLN02399 148 PGSNPEIKQFACTRFK--AEFPIFDK 171 (236)
T ss_pred CCCHHHHHHHHHHhcC--CCCccccc
Confidence 3567899997 6899 99999964
No 20
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=99.83 E-value=4.3e-20 Score=146.96 Aligned_cols=100 Identities=14% Similarity=0.089 Sum_probs=88.1
Q ss_pred CCCCcCCeEEECCCC----CEEecccccccCCCeEEEEEEc-CCCCcchHHHHHHHHHHHHHhhhCCcEEEEEeCCCHHH
Q 029880 72 VGDLLGDFSIFTAAG----EPVLFKDLWDQNEGVAVVALLR-HFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNK 146 (186)
Q Consensus 72 ~G~~aPdf~L~d~~G----~~vsLsdl~~~~~g~vvLvffr-~~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~d~~e~ 146 (186)
+|+.+|+|++++.+| +.++|+++. |+++|++|| ++|||.|..+++.|++++++|++.|++||+|+.|+.+.
T Consensus 1 vG~~aP~f~~~~~~g~~~~~~~~l~~~~----Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d~~~~ 76 (173)
T cd03015 1 VGKKAPDFKATAVVPNGEFKEISLSDYK----GKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTDSHFS 76 (173)
T ss_pred CCCcCCCCEeecccCCCCceEEehHHhC----CCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecCCHHH
Confidence 599999999999888 799999993 455555555 99999999999999999999999999999999998877
Q ss_pred HHHHHHH-------hCCeeeeEEEEcCCCCcccceeec
Q 029880 147 AQILAER-------VGNVFITQVLSLPLEVTPSLFKFH 177 (186)
Q Consensus 147 ~~~f~~~-------~~~~l~fpvL~Dp~~~~~~~f~~~ 177 (186)
.++|.+. .+ ++||+++|+++.+.+.||+.
T Consensus 77 ~~~~~~~~~~~~~~~~--~~f~~l~D~~~~~~~~~gv~ 112 (173)
T cd03015 77 HLAWRNTPRKEGGLGK--INFPLLADPKKKISRDYGVL 112 (173)
T ss_pred HHHHHHhhhhhCCccC--cceeEEECCchhHHHHhCCc
Confidence 7777765 46 89999999999999999975
No 21
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=99.82 E-value=5.7e-20 Score=156.44 Aligned_cols=107 Identities=16% Similarity=0.138 Sum_probs=93.4
Q ss_pred cCCCCCCCCcCCeEEEC-CCC--CEEecccccccCCCeEEEEEEcCCCCcchHHHHHHHHHHHHHhhhCCcEEEEEeCCC
Q 029880 67 EFPANVGDLLGDFSIFT-AAG--EPVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGT 143 (186)
Q Consensus 67 ~~~l~~G~~aPdf~L~d-~~G--~~vsLsdl~~~~~g~vvLvffr~~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~d~ 143 (186)
...+.+|+.+|+|++.+ .+| +.++|+++.+ ++++||+|||+.|||.|..|++.|++++++|+++|++||+||.|+
T Consensus 65 ~~~~~vGd~aPdF~l~~~~~g~~~~vsLsd~~k--gk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~Ds 142 (261)
T PTZ00137 65 VTSSLVGKLMPSFKGTALLNDDLVQFNSSDYFK--DSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVDS 142 (261)
T ss_pred cccccCCCCCCCCEeecccCCCceEEeHHHHcC--CCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCC
Confidence 34568999999999987 455 4699999853 458999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH-------hCCeeeeEEEEcCCCCcccceeec
Q 029880 144 PNKAQILAER-------VGNVFITQVLSLPLEVTPSLFKFH 177 (186)
Q Consensus 144 ~e~~~~f~~~-------~~~~l~fpvL~Dp~~~~~~~f~~~ 177 (186)
++..++|++. .+ ++||+++|+++.+++.||+-
T Consensus 143 ~~~h~aw~~~~~~~~g~~~--l~fPlLsD~~~~iakayGv~ 181 (261)
T PTZ00137 143 PFSHKAWKELDVRQGGVSP--LKFPLFSDISREVSKSFGLL 181 (261)
T ss_pred HHHHHHHHhhhhhhccccC--cceEEEEcCChHHHHHcCCC
Confidence 8777777653 56 89999999999999999973
No 22
>PRK13191 putative peroxiredoxin; Provisional
Probab=99.82 E-value=5.7e-20 Score=152.28 Aligned_cols=104 Identities=12% Similarity=0.117 Sum_probs=88.5
Q ss_pred CCCCCCCcCCeEEECCCCCEEeccc-ccccCCCeEEEEEEcCCCCcchHHHHHHHHHHHHHhhhCCcEEEEEeCCCHHHH
Q 029880 69 PANVGDLLGDFSIFTAAGEPVLFKD-LWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKA 147 (186)
Q Consensus 69 ~l~~G~~aPdf~L~d~~G~~vsLsd-l~~~~~g~vvLvffr~~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~d~~e~~ 147 (186)
.+.+|+.+|+|++.+.+|+ +.+.+ +. ++++||+|||+.|||.|..|++.|++++++|+++|++||+||.|+....
T Consensus 6 ~~~iG~~aPdF~l~~~~G~-~~l~~~~~---GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~Ds~~~h 81 (215)
T PRK13191 6 IPLIGEKFPEMEVITTHGK-IKLPDDYK---GRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVDSNISH 81 (215)
T ss_pred cccCCCcCCCCEeecCCCC-EEcHHHhC---CCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHH
Confidence 4679999999999999997 55645 52 4467888999999999999999999999999999999999999998876
Q ss_pred HHHHH---H-hCCeeeeEEEEcCCCCcccceee
Q 029880 148 QILAE---R-VGNVFITQVLSLPLEVTPSLFKF 176 (186)
Q Consensus 148 ~~f~~---~-~~~~l~fpvL~Dp~~~~~~~f~~ 176 (186)
++|.+ + .+..++||+++|+++.+.+.||+
T Consensus 82 ~aw~~~~~~~~~~~i~fPllsD~~~~ia~~ygv 114 (215)
T PRK13191 82 IEWVMWIEKNLKVEVPFPIIADPMGNVAKRLGM 114 (215)
T ss_pred HHHHhhHHHhcCCCCceEEEECCchHHHHHcCC
Confidence 66543 2 12228999999999999999997
No 23
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=99.81 E-value=7.9e-20 Score=138.74 Aligned_cols=100 Identities=20% Similarity=0.267 Sum_probs=88.9
Q ss_pred CcCCeEEECCCCCEEecccccccCCCeEEEEEEcCCCCcchHHHHHHHHHHHHHhhhCCcEEEEEeCCCHHHHHHHHHHh
Q 029880 75 LLGDFSIFTAAGEPVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKAQILAERV 154 (186)
Q Consensus 75 ~aPdf~L~d~~G~~vsLsdl~~~~~g~vvLvffr~~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~d~~e~~~~f~~~~ 154 (186)
.+|+|++.|.+|+.++|+++. +++++|+||++.||+.|..+++.|++++++|++.|+.+|+|+.++.+.+++|++++
T Consensus 1 ~~p~f~l~~~~g~~~~l~~~~---gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d~~~~~~~~~~~~ 77 (140)
T cd02971 1 KAPDFTLPATDGGEVSLSDFK---GKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVDSPFSHKAWAEKE 77 (140)
T ss_pred CCCCceeccCCCcEEehHHhC---CCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhcc
Confidence 479999999999999999993 33555555558999999999999999999999999999999999999999999999
Q ss_pred -CCeeeeEEEEcCCCCcccceeeceE
Q 029880 155 -GNVFITQVLSLPLEVTPSLFKFHVT 179 (186)
Q Consensus 155 -~~~l~fpvL~Dp~~~~~~~f~~~~~ 179 (186)
+ .+||+++|+++.+.+.||+..+
T Consensus 78 ~~--~~~~~l~D~~~~~~~~~g~~~~ 101 (140)
T cd02971 78 GG--LNFPLLSDPDGEFAKAYGVLIE 101 (140)
T ss_pred cC--CCceEEECCChHHHHHcCCccc
Confidence 8 9999999999999888887643
No 24
>PRK13189 peroxiredoxin; Provisional
Probab=99.81 E-value=9.5e-20 Score=151.57 Aligned_cols=106 Identities=14% Similarity=0.117 Sum_probs=91.1
Q ss_pred CCCCCCCcCCeEEECCCCCEEecccccccCCCeEEEEEEcCCCCcchHHHHHHHHHHHHHhhhCCcEEEEEeCCCHHHHH
Q 029880 69 PANVGDLLGDFSIFTAAGEPVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKAQ 148 (186)
Q Consensus 69 ~l~~G~~aPdf~L~d~~G~~vsLsdl~~~~~g~vvLvffr~~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~d~~e~~~ 148 (186)
.+.+|+.+|+|++.+.+|+ ++++++.+ ++++||+|||+.|||.|..|++.|++++++|+++|++||+||.|+....+
T Consensus 8 ~~~vG~~aPdF~~~~~~g~-~~l~d~~~--Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D~~~~h~ 84 (222)
T PRK13189 8 MPLIGDKFPEFEVKTTHGP-IKLPDDYK--GKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSIDQVFSHI 84 (222)
T ss_pred cccCCCcCCCcEeEcCCCC-EeeHHHhC--CCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHH
Confidence 4678999999999999985 77877542 44688899999999999999999999999999999999999999988776
Q ss_pred HHHHH----hCCeeeeEEEEcCCCCcccceeec
Q 029880 149 ILAER----VGNVFITQVLSLPLEVTPSLFKFH 177 (186)
Q Consensus 149 ~f~~~----~~~~l~fpvL~Dp~~~~~~~f~~~ 177 (186)
+|.+. .+..++||+++|+++.+.+.||+.
T Consensus 85 aw~~~~~~~~g~~i~fPllsD~~~~ia~~ygv~ 117 (222)
T PRK13189 85 KWVEWIKEKLGVEIEFPIIADDRGEIAKKLGMI 117 (222)
T ss_pred HHHHhHHHhcCcCcceeEEEcCccHHHHHhCCC
Confidence 66653 222389999999999999999975
No 25
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=99.80 E-value=2e-19 Score=146.28 Aligned_cols=102 Identities=12% Similarity=-0.005 Sum_probs=90.2
Q ss_pred CCCCCCcCCeEEECC---CCCEEecccccccCCCeEEEEEEcCCCCcchHHHHHHHHHHHHHhhhCCcEEEEEeCCCHHH
Q 029880 70 ANVGDLLGDFSIFTA---AGEPVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNK 146 (186)
Q Consensus 70 l~~G~~aPdf~L~d~---~G~~vsLsdl~~~~~g~vvLvffr~~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~d~~e~ 146 (186)
+.+|+++|+|+.... +.+.++|+|+. ++++||.||++.|||.|..|++.|++++++|++.|++||+||.|+...
T Consensus 2 ~~~~~~~p~f~~~~~~~g~~~~v~L~d~~---Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D~~~~ 78 (187)
T PRK10382 2 SLINTKIKPFKNQAFKNGEFIEVTEKDTE---GRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFT 78 (187)
T ss_pred CccCCcCCCcEEEEEeCCcceEEEHHHhC---CCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCCCHHH
Confidence 578999999998763 44677788984 446777777799999999999999999999999999999999999999
Q ss_pred HHHHHHHh----CCeeeeEEEEcCCCCcccceee
Q 029880 147 AQILAERV----GNVFITQVLSLPLEVTPSLFKF 176 (186)
Q Consensus 147 ~~~f~~~~----~~~l~fpvL~Dp~~~~~~~f~~ 176 (186)
.++|++.. + ++||+|+|+++.+.+.||+
T Consensus 79 ~~a~~~~~~~~~~--l~fpllsD~~~~ia~~ygv 110 (187)
T PRK10382 79 HKAWHSSSETIAK--IKYAMIGDPTGALTRNFDN 110 (187)
T ss_pred HHHHHHhhccccC--CceeEEEcCchHHHHHcCC
Confidence 99999764 6 8999999999999999997
No 26
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=99.80 E-value=1.7e-19 Score=140.72 Aligned_cols=83 Identities=17% Similarity=0.215 Sum_probs=76.8
Q ss_pred CCeEEECCCCCEEecccccccCCCeEEEEEEcCCCCcchHHHHHHHHHHHHHhhhCCcEEEEEeC--------CCHHHHH
Q 029880 77 GDFSIFTAAGEPVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGV--------GTPNKAQ 148 (186)
Q Consensus 77 Pdf~L~d~~G~~vsLsdl~~~~~g~vvLvffr~~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~--------d~~e~~~ 148 (186)
-+|++.|.+|++++|+++ +|+++|++||++|||+|..+++.|+++++++++.|+.||+|++ ++.+.++
T Consensus 3 ~~f~l~~~~G~~~~l~~~----~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~~~~~~~~~d~~~~~~ 78 (153)
T TIGR02540 3 YSFEVKDARGRTVSLEKY----RGKVSLVVNVASECGFTDQNYRALQELHRELGPSHFNVLAFPCNQFGESEPDSSKEIE 78 (153)
T ss_pred ccceeECCCCCEecHHHh----CCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCCeEEEEEeccccccCCCCCHHHHH
Confidence 479999999999999999 5788889999999999999999999999999999999999995 5678899
Q ss_pred HHHHH-hCCeeeeEEEEc
Q 029880 149 ILAER-VGNVFITQVLSL 165 (186)
Q Consensus 149 ~f~~~-~~~~l~fpvL~D 165 (186)
+|+++ ++ ++||+++|
T Consensus 79 ~f~~~~~~--~~fp~~~d 94 (153)
T TIGR02540 79 SFARRNYG--VTFPMFSK 94 (153)
T ss_pred HHHHHhcC--CCCCccce
Confidence 99986 89 99999987
No 27
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=99.80 E-value=5.7e-19 Score=138.83 Aligned_cols=107 Identities=20% Similarity=0.231 Sum_probs=97.4
Q ss_pred cCCCCCCCCcCCeEEECCCCCEEecccccccCCCeEEEEEEcCCCCcchHHHHHHHHHHHHHhhhCCcEEEEEeCCC-HH
Q 029880 67 EFPANVGDLLGDFSIFTAAGEPVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGT-PN 145 (186)
Q Consensus 67 ~~~l~~G~~aPdf~L~d~~G~~vsLsdl~~~~~g~vvLvffr~~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~d~-~e 145 (186)
...+.+|+.+|+|++.+.+|+.++++++ +|++++++||++||+.|+.+++.|+++++++.+.++++|+|+.|+ .+
T Consensus 32 ~~~~~~g~~~p~~~~~~~~g~~~~l~~~----~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~ 107 (173)
T PRK03147 32 KEKVQVGKEAPNFVLTDLEGKKIELKDL----KGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETEL 107 (173)
T ss_pred ccccCCCCCCCCcEeecCCCCEEeHHHc----CCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHH
Confidence 3568899999999999999999999998 567788888999999999999999999999999999999999986 46
Q ss_pred HHHHHHHHhCCeeeeEEEEcCCCCcccceeeceE
Q 029880 146 KAQILAERVGNVFITQVLSLPLEVTPSLFKFHVT 179 (186)
Q Consensus 146 ~~~~f~~~~~~~l~fpvL~Dp~~~~~~~f~~~~~ 179 (186)
.+++|.++++ ++||++.|+++.+.+.|++..+
T Consensus 108 ~~~~~~~~~~--~~~~~~~d~~~~~~~~~~v~~~ 139 (173)
T PRK03147 108 AVKNFVNRYG--LTFPVAIDKGRQVIDAYGVGPL 139 (173)
T ss_pred HHHHHHHHhC--CCceEEECCcchHHHHcCCCCc
Confidence 7899999999 9999999999999888887653
No 28
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=99.79 E-value=3.2e-19 Score=141.26 Aligned_cols=101 Identities=19% Similarity=0.310 Sum_probs=92.8
Q ss_pred CCCcCCeEEECCCCCEEecccccccCCCeEEEEEEcCCCCcchHHHHHHHHHHHHHhhhCCcEEEEEeCCC--------H
Q 029880 73 GDLLGDFSIFTAAGEPVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGT--------P 144 (186)
Q Consensus 73 G~~aPdf~L~d~~G~~vsLsdl~~~~~g~vvLvffr~~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~d~--------~ 144 (186)
|+.+|+|++.|.+|+.++|+++. +++++|++||++|||.|..+++.|++++++++++++.+|+|+.++ .
T Consensus 1 g~~~p~f~l~~~~g~~v~l~~~~---~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~~ 77 (171)
T cd02969 1 GSPAPDFSLPDTDGKTYSLADFA---DGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSP 77 (171)
T ss_pred CCcCCCccccCCCCCEEeHHHHh---CCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccCH
Confidence 68899999999999999999984 468899999999999999999999999999999999999999864 6
Q ss_pred HHHHHHHHHhCCeeeeEEEEcCCCCcccceeece
Q 029880 145 NKAQILAERVGNVFITQVLSLPLEVTPSLFKFHV 178 (186)
Q Consensus 145 e~~~~f~~~~~~~l~fpvL~Dp~~~~~~~f~~~~ 178 (186)
+.+++|+++++ ++||++.|+++.+.+.|++..
T Consensus 78 ~~~~~~~~~~~--~~~~~l~D~~~~~~~~~~v~~ 109 (171)
T cd02969 78 ENMKAKAKEHG--YPFPYLLDETQEVAKAYGAAC 109 (171)
T ss_pred HHHHHHHHHCC--CCceEEECCchHHHHHcCCCc
Confidence 78999999999 999999999998888888754
No 29
>KOG0855 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=6.8e-19 Score=140.03 Aligned_cols=121 Identities=17% Similarity=0.301 Sum_probs=105.3
Q ss_pred cccccccceeecccCCcCCCCCCCCcCCeEEECCCCCEEecccccccCCCeEEEEEEcCCCCcchHHHHHHHHHHHHHhh
Q 029880 51 NNAISRPRLLVRASATEFPANVGDLLGDFSIFTAAGEPVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFD 130 (186)
Q Consensus 51 ~~~~~~~~l~~~a~~~~~~l~~G~~aPdf~L~d~~G~~vsLsdl~~~~~g~vvLvffr~~wCp~C~~el~~L~~l~~ef~ 130 (186)
.++.+...-..+.+.....+.+|+.+|||+|+|.+|+.|+|.++.+ ++++|+++|++.-.|.|.+|...+++.|++|+
T Consensus 44 ~~~~~~~~~~s~~Ssds~~v~~Gd~iPD~tL~dedg~sisLkkit~--nk~vV~f~YP~asTPGCTkQaCgFRDnY~k~k 121 (211)
T KOG0855|consen 44 GSTLTHSSYISPVSSDSLKVNKGDAIPDFTLKDEDGKSISLKKITG--NKPVVLFFYPAASTPGCTKQACGFRDNYEKFK 121 (211)
T ss_pred cccccceeeeccccccceeeecCCcCCCcccccCCCCeeeeeeecC--CCcEEEEEeccCCCCCcccccccccccHHHHh
Confidence 3434444444555555667899999999999999999999999975 45899999999999999999999999999999
Q ss_pred hCCcEEEEEeCCCHHHHHHHHHHhCCeeeeEEEEcCCCCccccee
Q 029880 131 SAGVKLIAVGVGTPNKAQILAERVGNVFITQVLSLPLEVTPSLFK 175 (186)
Q Consensus 131 ~~Gv~vVaIs~d~~e~~~~f~~~~~~~l~fpvL~Dp~~~~~~~f~ 175 (186)
..|..|+|++.|+....++|+.+++ ++|.+|+||.+++...+|
T Consensus 122 ka~aeV~GlS~D~s~sqKaF~sKqn--lPYhLLSDpk~e~ik~lG 164 (211)
T KOG0855|consen 122 KAGAEVIGLSGDDSASQKAFASKQN--LPYHLLSDPKNEVIKDLG 164 (211)
T ss_pred hcCceEEeeccCchHHHHHhhhhcc--CCeeeecCcchhHHHHhC
Confidence 9999999999999999999999999 999999999987665444
No 30
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=99.77 E-value=6.3e-19 Score=133.10 Aligned_cols=88 Identities=16% Similarity=0.202 Sum_probs=80.0
Q ss_pred CCEEecccccccCCCeEEEEEEcCCCCcchHHHHHHHHHHHHHhhhCCcEEEEEeC------CCHHHHHHHHHHhCCeee
Q 029880 86 GEPVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGV------GTPNKAQILAERVGNVFI 159 (186)
Q Consensus 86 G~~vsLsdl~~~~~g~vvLvffr~~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~------d~~e~~~~f~~~~~~~l~ 159 (186)
|+.++|+++ +|+++|++||++|||+|+++++.|+++++++++.|+.+|+|+. ++.+.+++|+++++ ++
T Consensus 13 ~~~v~l~~~----~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~--~~ 86 (126)
T cd03012 13 DKPLSLAQL----RGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRYG--IT 86 (126)
T ss_pred CCccCHHHh----CCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHcC--CC
Confidence 678999998 5688999999999999999999999999999999999999986 35788999999999 99
Q ss_pred eEEEEcCCCCcccceeeceE
Q 029880 160 TQVLSLPLEVTPSLFKFHVT 179 (186)
Q Consensus 160 fpvL~Dp~~~~~~~f~~~~~ 179 (186)
||+++|+++.+.+.|++..+
T Consensus 87 ~p~~~D~~~~~~~~~~v~~~ 106 (126)
T cd03012 87 YPVANDNDYATWRAYGNQYW 106 (126)
T ss_pred CCEEECCchHHHHHhCCCcC
Confidence 99999999998888887544
No 31
>PRK15000 peroxidase; Provisional
Probab=99.76 E-value=3.4e-18 Score=140.17 Aligned_cols=105 Identities=14% Similarity=0.089 Sum_probs=82.7
Q ss_pred CCCCCcCCeEEECCC--CCE---EecccccccCCCeEEEEEEcCCCCcchHHHHHHHHHHHHHhhhCCcEEEEEeCCCHH
Q 029880 71 NVGDLLGDFSIFTAA--GEP---VLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPN 145 (186)
Q Consensus 71 ~~G~~aPdf~L~d~~--G~~---vsLsdl~~~~~g~vvLvffr~~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~d~~e 145 (186)
.+|+.+|+|++.+.. |+. ++|+++.+ ++++||.||++.|||.|..|++.|++++++|+++|++||+||.|+.+
T Consensus 3 ~vg~~aPdF~~~~~~~~g~~~~~~~l~~~~~--gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D~~~ 80 (200)
T PRK15000 3 LVTRQAPDFTAAAVLGSGEIVDKFNFKQHTN--GKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFDSEF 80 (200)
T ss_pred cCCCcCCCCEeecccCCCceeeeeeHHHHhC--CCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHH
Confidence 589999999999864 454 45555532 33455555545699999999999999999999999999999999988
Q ss_pred HHHHHHH----HhCC-eeeeEEEEcCCCCcccceeec
Q 029880 146 KAQILAE----RVGN-VFITQVLSLPLEVTPSLFKFH 177 (186)
Q Consensus 146 ~~~~f~~----~~~~-~l~fpvL~Dp~~~~~~~f~~~ 177 (186)
..++|.+ +.|. .++||+++|+++.+.+.||+-
T Consensus 81 ~~~~w~~~~~~~~g~~~i~fpllsD~~~~ia~~ygv~ 117 (200)
T PRK15000 81 VHNAWRNTPVDKGGIGPVKYAMVADVKREIQKAYGIE 117 (200)
T ss_pred HHHHHHhhHHHhCCccccCceEEECCCcHHHHHcCCc
Confidence 7666654 3441 269999999999999999874
No 32
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=99.76 E-value=4.1e-18 Score=138.04 Aligned_cols=104 Identities=17% Similarity=0.231 Sum_probs=86.4
Q ss_pred CCCCCCCCcCCeEEECCCCCEEecccccccCCCeEEEEEEcCCCCcchHHHHHHHHHHHHHhhhCCcEEEEEeCCCHHHH
Q 029880 68 FPANVGDLLGDFSIFTAAGEPVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKA 147 (186)
Q Consensus 68 ~~l~~G~~aPdf~L~d~~G~~vsLsdl~~~~~g~vvLvffr~~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~d~~e~~ 147 (186)
..+.+|+.+|+|+++|.+|+.+++++... +|+++|++||++|||+|++++|.+++++++ .|+++++|+.++.+.+
T Consensus 44 ~~~~vG~~aP~f~l~d~~G~~v~l~~~~~--~gk~vvl~F~atwCp~C~~~lp~l~~~~~~---~~~~vv~Is~~~~~~~ 118 (189)
T TIGR02661 44 HGPDVGDAAPIFNLPDFDGEPVRIGGSIA--PGRPTLLMFTAPSCPVCDKLFPIIKSIARA---EETDVVMISDGTPAEH 118 (189)
T ss_pred cCCCCCCcCCCcEecCCCCCEEeccchhc--CCCEEEEEEECCCChhHHHHHHHHHHHHHh---cCCcEEEEeCCCHHHH
Confidence 45789999999999999999999964211 567888899999999999999999998754 4788999999999999
Q ss_pred HHHHHHhCCeeeeEEEEcCCCCcccceeeceE
Q 029880 148 QILAERVGNVFITQVLSLPLEVTPSLFKFHVT 179 (186)
Q Consensus 148 ~~f~~~~~~~l~fpvL~Dp~~~~~~~f~~~~~ 179 (186)
++|+++++ ++|+.+. .++.+.+.|++..+
T Consensus 119 ~~~~~~~~--~~~~~~~-~~~~i~~~y~v~~~ 147 (189)
T TIGR02661 119 RRFLKDHE--LGGERYV-VSAEIGMAFQVGKI 147 (189)
T ss_pred HHHHHhcC--CCcceee-chhHHHHhccCCcc
Confidence 99999999 8887654 45666777776544
No 33
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=99.76 E-value=2.5e-18 Score=130.99 Aligned_cols=98 Identities=23% Similarity=0.339 Sum_probs=87.4
Q ss_pred CcCCeEEECCCCCEEecccccccCCCeEEEEEEcCCCCcc-hHHHHHHHHHHHHHhhhCC---cEEEEEeCC----CHHH
Q 029880 75 LLGDFSIFTAAGEPVLFKDLWDQNEGVAVVALLRHFGCPC-CWELASALKESKARFDSAG---VKLIAVGVG----TPNK 146 (186)
Q Consensus 75 ~aPdf~L~d~~G~~vsLsdl~~~~~g~vvLvffr~~wCp~-C~~el~~L~~l~~ef~~~G---v~vVaIs~d----~~e~ 146 (186)
.+|+|++.|.+|+.++++++ +|+++|++||++||+. |..+++.|+++++++.+.| +++|+|+.| +.+.
T Consensus 1 ~~p~f~l~~~~g~~~~l~~~----~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~~~d~~~~ 76 (142)
T cd02968 1 IGPDFTLTDQDGRPVTLSDL----KGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDPERDTPEV 76 (142)
T ss_pred CCCceEEEcCCCCEEchHHh----CCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECCCCCCHHH
Confidence 37999999999999999998 5688999999999997 9999999999999999875 999999985 3578
Q ss_pred HHHHHHHhCCeeeeEEEEcCC---CCcccceeece
Q 029880 147 AQILAERVGNVFITQVLSLPL---EVTPSLFKFHV 178 (186)
Q Consensus 147 ~~~f~~~~~~~l~fpvL~Dp~---~~~~~~f~~~~ 178 (186)
+++|+++++ .+|++|.|++ +.+.+.||+..
T Consensus 77 ~~~~~~~~~--~~~~~l~~~~~~~~~~~~~~g~~~ 109 (142)
T cd02968 77 LKAYAKAFG--PGWIGLTGTPEEIEALAKAFGVYY 109 (142)
T ss_pred HHHHHHHhC--CCcEEEECCHHHHHHHHHHhcEEE
Confidence 999999999 9999999985 67778888654
No 34
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=99.75 E-value=3e-18 Score=138.24 Aligned_cols=102 Identities=16% Similarity=0.140 Sum_probs=85.7
Q ss_pred CCCCCCCcCCeEEECCC--CCEEecccccccCCCeEEEEEEcCCCCcchHHHHHHHHHHHHHhhhCCcEEEEEeCCC-HH
Q 029880 69 PANVGDLLGDFSIFTAA--GEPVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGT-PN 145 (186)
Q Consensus 69 ~l~~G~~aPdf~L~d~~--G~~vsLsdl~~~~~g~vvLvffr~~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~d~-~e 145 (186)
...+|+.+|+|++.|.+ |+.++++++. +|+++|++||++|||+|++++|.|.+++ ++|+.||+|+.++ .+
T Consensus 38 ~~~~g~~~p~f~l~~~~g~g~~~~~~~~~---~gk~vvv~FwatwC~~C~~e~p~l~~l~----~~~~~vi~v~~~~~~~ 110 (185)
T PRK15412 38 SALIGKPVPKFRLESLENPGQFYQADVLT---QGKPVLLNVWATWCPTCRAEHQYLNQLS----AQGIRVVGMNYKDDRQ 110 (185)
T ss_pred hhhcCCCCCCcCCccCCCCCccccHHHhc---CCCEEEEEEECCCCHHHHHHHHHHHHHH----HcCCEEEEEECCCCHH
Confidence 35689999999999998 4777777664 5788999999999999999999998775 4689999999754 67
Q ss_pred HHHHHHHHhCCeeeeEE-EEcCCCCcccceeeceE
Q 029880 146 KAQILAERVGNVFITQV-LSLPLEVTPSLFKFHVT 179 (186)
Q Consensus 146 ~~~~f~~~~~~~l~fpv-L~Dp~~~~~~~f~~~~~ 179 (186)
.+++|.++++ ++||+ +.|+++.+...|++..+
T Consensus 111 ~~~~~~~~~~--~~~~~~~~D~~~~~~~~~gv~~~ 143 (185)
T PRK15412 111 KAISWLKELG--NPYALSLFDGDGMLGLDLGVYGA 143 (185)
T ss_pred HHHHHHHHcC--CCCceEEEcCCccHHHhcCCCcC
Confidence 7999999999 99985 88999888877776543
No 35
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=99.74 E-value=7.7e-18 Score=137.36 Aligned_cols=104 Identities=11% Similarity=0.074 Sum_probs=85.9
Q ss_pred CCCCCCcCCeEEEC----CCCCEEecccccccCCCeEEEEEEcCCCCcchHHHHHHHHHHHHHhhhCCcEEEEEeCCCHH
Q 029880 70 ANVGDLLGDFSIFT----AAGEPVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPN 145 (186)
Q Consensus 70 l~~G~~aPdf~L~d----~~G~~vsLsdl~~~~~g~vvLvffr~~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~d~~e 145 (186)
+.+|+.+|+|++.+ .+|++++|+++. +++++|+||.+.||+.|..|+..|++++++|+++|++||+||.|+.+
T Consensus 6 ~~~G~~aPdF~~~~~~~~~~~~~v~l~d~~---Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d~~~ 82 (199)
T PTZ00253 6 AKINHPAPSFEEVALMPNGSFKKISLSSYK---GKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMDSEY 82 (199)
T ss_pred cccCCcCCCCEeeccccCCCCcEEeHHHHC---CCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCCCHH
Confidence 57899999999665 567899999994 34566666667999999999999999999999999999999999887
Q ss_pred HHHHHHH--Hh--C-CeeeeEEEEcCCCCcccceee
Q 029880 146 KAQILAE--RV--G-NVFITQVLSLPLEVTPSLFKF 176 (186)
Q Consensus 146 ~~~~f~~--~~--~-~~l~fpvL~Dp~~~~~~~f~~ 176 (186)
...++.. +. + ..++||+++|+++.+.+.||+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~fpll~D~~~~ia~~ygv 118 (199)
T PTZ00253 83 AHLQWTLQERKKGGLGTMAIPMLADKTKSIARSYGV 118 (199)
T ss_pred HHHHHHhChHhhCCccccccceEECcHhHHHHHcCC
Confidence 6555532 21 1 128999999999999999997
No 36
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=99.73 E-value=1.3e-17 Score=133.02 Aligned_cols=101 Identities=17% Similarity=0.155 Sum_probs=84.1
Q ss_pred CCCCCCCcCCeEEECCCCC--EEecccccccCCCeEEEEEEcCCCCcchHHHHHHHHHHHHHhhhCCcEEEEEeCCC-HH
Q 029880 69 PANVGDLLGDFSIFTAAGE--PVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGT-PN 145 (186)
Q Consensus 69 ~l~~G~~aPdf~L~d~~G~--~vsLsdl~~~~~g~vvLvffr~~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~d~-~e 145 (186)
...+|+.+|+|+++|.+|+ .++++++. +|+++|++||++|||.|++++|.|+++++ +|+++|+|+.++ .+
T Consensus 33 ~~~vG~~ap~f~l~~~~G~~~~~~~~~~~---~gk~vll~F~a~wC~~C~~~~p~l~~l~~----~~~~vi~V~~~~~~~ 105 (173)
T TIGR00385 33 SALIGKPVPAFPLAALREPLQAYTPEAFI---QGKPVLLNVWASWCPPCRAEHPYLNELAK----DGLPIVGVDYKDQSQ 105 (173)
T ss_pred chhcCCCCCCccccccCCCCcccCHHHhc---CCCEEEEEEECCcCHHHHHHHHHHHHHHH----cCCEEEEEECCCChH
Confidence 3578999999999999997 45555664 57899999999999999999999987653 589999999864 56
Q ss_pred HHHHHHHHhCCeeeeE-EEEcCCCCcccceeece
Q 029880 146 KAQILAERVGNVFITQ-VLSLPLEVTPSLFKFHV 178 (186)
Q Consensus 146 ~~~~f~~~~~~~l~fp-vL~Dp~~~~~~~f~~~~ 178 (186)
..++|+++++ ++|| ++.|+++.+.+.|++..
T Consensus 106 ~~~~~~~~~~--~~f~~v~~D~~~~~~~~~~v~~ 137 (173)
T TIGR00385 106 NALKFLKELG--NPYQAILIDPNGKLGLDLGVYG 137 (173)
T ss_pred HHHHHHHHcC--CCCceEEECCCCchHHhcCCee
Confidence 6789999999 9997 67899998888887644
No 37
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=99.73 E-value=2.8e-17 Score=120.95 Aligned_cols=93 Identities=14% Similarity=0.224 Sum_probs=79.1
Q ss_pred CCeEEECCCCCEEecccccccCCCeEEEEEEcCCCCcchHHHHHHHHHHHHHhhhCCcEEEEEeCCCHHHHHHHHHHhCC
Q 029880 77 GDFSIFTAAGEPVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKAQILAERVGN 156 (186)
Q Consensus 77 Pdf~L~d~~G~~vsLsdl~~~~~g~vvLvffr~~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~d~~e~~~~f~~~~~~ 156 (186)
|+|++.|.+|+.++|+++. +|+++|++||++||+.|+.+++.|+++++++. .++.+++|+.++.+..++|+++++
T Consensus 1 p~f~l~~~~G~~~~l~~~~---~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~-~~~~vi~v~~~~~~~~~~~~~~~~- 75 (114)
T cd02967 1 PTFDLTTIDGAPVRIGGIS---PGRPTLLFFLSPTCPVCKKLLPVIRSIARAEA-DWLDVVLASDGEKAEHQRFLKKHG- 75 (114)
T ss_pred CCceeecCCCCEEEccccc---CCCeEEEEEECCCCcchHhHhHHHHHHHHHhc-CCcEEEEEeCCCHHHHHHHHHHhC-
Confidence 7899999999999999984 26888888999999999999999999988874 468899998778889999999999
Q ss_pred eee-eEEEEcCCCCcccceeec
Q 029880 157 VFI-TQVLSLPLEVTPSLFKFH 177 (186)
Q Consensus 157 ~l~-fpvL~Dp~~~~~~~f~~~ 177 (186)
+. ||++.|. .+.+.|++.
T Consensus 76 -~~~~p~~~~~--~~~~~~~~~ 94 (114)
T cd02967 76 -LEAFPYVLSA--ELGMAYQVS 94 (114)
T ss_pred -CCCCcEEecH--HHHhhcCCC
Confidence 84 8988753 355666654
No 38
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=99.72 E-value=1.8e-17 Score=124.70 Aligned_cols=96 Identities=18% Similarity=0.084 Sum_probs=82.6
Q ss_pred CCcCCeEEECCCC--CEEecccccccCCCeEEEEEEcCCCCcchHHHHHHHHHHHHHhhhCCcEEEEEeCC-CHHHHHHH
Q 029880 74 DLLGDFSIFTAAG--EPVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVG-TPNKAQIL 150 (186)
Q Consensus 74 ~~aPdf~L~d~~G--~~vsLsdl~~~~~g~vvLvffr~~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~d-~~e~~~~f 150 (186)
+.+|+|+++|.+| +.++++++ +|+++|+.||++|||.|+.+++.|+++.+++ +++||+|+.+ +.+.+++|
T Consensus 1 ~~~p~f~~~~~~g~~~~~~~~~~----~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~---~~~vv~v~~~~~~~~~~~~ 73 (127)
T cd03010 1 KPAPAFSLPALPGPDKTLTSADL----KGKPYLLNVWASWCAPCREEHPVLMALARQG---RVPIYGINYKDNPENALAW 73 (127)
T ss_pred CCCCCcccccccCCCccccHHHc----CCCEEEEEEEcCcCHHHHHHHHHHHHHHHhc---CcEEEEEECCCCHHHHHHH
Confidence 3689999999999 88999998 5678888889999999999999999987764 5999999974 57789999
Q ss_pred HHHhCCeeeeE-EEEcCCCCcccceeece
Q 029880 151 AERVGNVFITQ-VLSLPLEVTPSLFKFHV 178 (186)
Q Consensus 151 ~~~~~~~l~fp-vL~Dp~~~~~~~f~~~~ 178 (186)
+++++ ++|+ ++.|+++.+.+.|++..
T Consensus 74 ~~~~~--~~~~~~~~D~~~~~~~~~~v~~ 100 (127)
T cd03010 74 LARHG--NPYAAVGFDPDGRVGIDLGVYG 100 (127)
T ss_pred HHhcC--CCCceEEECCcchHHHhcCCCC
Confidence 99999 8885 67899988888777644
No 39
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=99.69 E-value=1.4e-16 Score=129.24 Aligned_cols=88 Identities=11% Similarity=0.120 Sum_probs=78.5
Q ss_pred CCcCCeEEECCCCCEEecccccccCCCeEEEEEEcCCCCcchHHHHHHHHHHHHHhhhCCcEEEEEeC--------CCHH
Q 029880 74 DLLGDFSIFTAAGEPVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGV--------GTPN 145 (186)
Q Consensus 74 ~~aPdf~L~d~~G~~vsLsdl~~~~~g~vvLvffr~~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~--------d~~e 145 (186)
+.+++|++.|.+|+.++|+++ +|+++||.|||+||++|. +++.|++++++|+++|+.||||++ ++.+
T Consensus 3 ~~~~~f~~~~~~G~~v~Ls~~----~GKvvLVvf~AS~C~~~~-q~~~L~~L~~~y~~~gl~Vlg~p~nqf~~qe~~~~~ 77 (183)
T PRK10606 3 DSILTTVVTTIDGEVTTLEKY----AGNVLLIVNVASKCGLTP-QYEQLENIQKAWADQGFVVLGFPCNQFLGQEPGSDE 77 (183)
T ss_pred CCccCcEeECCCCCEEeHHHh----CCCEEEEEEEeCCCCCcH-HHHHHHHHHHHHhhCCeEEEEeeccccccCCCCCHH
Confidence 357899999999999999999 578999999999999995 799999999999999999999987 4678
Q ss_pred HHHHHHH-HhCCeeeeEEE--EcCCC
Q 029880 146 KAQILAE-RVGNVFITQVL--SLPLE 168 (186)
Q Consensus 146 ~~~~f~~-~~~~~l~fpvL--~Dp~~ 168 (186)
.+++|++ +++ ++||++ .|.++
T Consensus 78 ei~~f~~~~~g--~~Fpv~~k~dvnG 101 (183)
T PRK10606 78 EIKTYCRTTWG--VTFPMFSKIEVNG 101 (183)
T ss_pred HHHHHHHHccC--CCceeEEEEccCC
Confidence 8999997 799 999999 55544
No 40
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=99.69 E-value=1.2e-16 Score=114.61 Aligned_cols=95 Identities=24% Similarity=0.397 Sum_probs=88.0
Q ss_pred CeEEECCCCCEEecccccccCCCeEEEEEEcCCCCcchHHHHHHHHHHHHHhhhCCcEEEEEeCCC--HHHHHHHHHHhC
Q 029880 78 DFSIFTAAGEPVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGT--PNKAQILAERVG 155 (186)
Q Consensus 78 df~L~d~~G~~vsLsdl~~~~~g~vvLvffr~~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~d~--~e~~~~f~~~~~ 155 (186)
+|++.+.+|+.+++.++ .++.+|++||++||+.|...++.|.++.+++.+.++.+++|+.+. .+.+++|.++++
T Consensus 1 ~~~~~~~~g~~~~~~~~----~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~ 76 (116)
T cd02966 1 DFSLPDLDGKPVSLSDL----KGKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYG 76 (116)
T ss_pred CccccCCCCCEeehHHc----CCCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcC
Confidence 57889999999999998 468899999999999999999999999999998899999999998 899999999999
Q ss_pred CeeeeEEEEcCCCCcccceeece
Q 029880 156 NVFITQVLSLPLEVTPSLFKFHV 178 (186)
Q Consensus 156 ~~l~fpvL~Dp~~~~~~~f~~~~ 178 (186)
++|+++.|++..+.+.|++..
T Consensus 77 --~~~~~~~~~~~~~~~~~~~~~ 97 (116)
T cd02966 77 --ITFPVLLDPDGELAKAYGVRG 97 (116)
T ss_pred --CCcceEEcCcchHHHhcCcCc
Confidence 999999999988999888854
No 41
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=99.65 E-value=5.5e-16 Score=115.44 Aligned_cols=92 Identities=20% Similarity=0.290 Sum_probs=81.6
Q ss_pred CCeEEECCCCCEEecccccccCCCeEEEEEEcCCCCcchHHHHHHHHHHHHHhhhCCcEEEEEeCC--CHHHHHHHHHHh
Q 029880 77 GDFSIFTAAGEPVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVG--TPNKAQILAERV 154 (186)
Q Consensus 77 Pdf~L~d~~G~~vsLsdl~~~~~g~vvLvffr~~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~d--~~e~~~~f~~~~ 154 (186)
|+|++.|.+|+.+++.++ +|+++|++||++||+.|+.+++.|++++++ +.+++|+.+ +.+.+++|++++
T Consensus 1 p~f~l~~~~g~~~~~~~~----~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~-----~~~i~i~~~~~~~~~~~~~~~~~ 71 (123)
T cd03011 1 PLFTATTLDGEQFDLESL----SGKPVLVYFWATWCPVCRFTSPTVNQLAAD-----YPVVSVALRSGDDGAVARFMQKK 71 (123)
T ss_pred CCceeecCCCCEeeHHHh----CCCEEEEEEECCcChhhhhhChHHHHHHhh-----CCEEEEEccCCCHHHHHHHHHHc
Confidence 789999999999999998 568888888999999999999999999876 567777765 478899999999
Q ss_pred CCeeeeEEEEcCCCCcccceeeceE
Q 029880 155 GNVFITQVLSLPLEVTPSLFKFHVT 179 (186)
Q Consensus 155 ~~~l~fpvL~Dp~~~~~~~f~~~~~ 179 (186)
+ ++||++.|+++.+.+.|++..+
T Consensus 72 ~--~~~~~~~d~~~~~~~~~~i~~~ 94 (123)
T cd03011 72 G--YGFPVINDPDGVISARWGVSVT 94 (123)
T ss_pred C--CCccEEECCCcHHHHhCCCCcc
Confidence 9 9999999999988888887664
No 42
>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=2.2e-15 Score=122.51 Aligned_cols=106 Identities=15% Similarity=0.160 Sum_probs=95.3
Q ss_pred CCCCCCCcCCeEEECC-CCC---EEecccccccCCCeEEEEEEcCCCCcchHHHHHHHHHHHHHhhhCCcEEEEEeCCCH
Q 029880 69 PANVGDLLGDFSIFTA-AGE---PVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTP 144 (186)
Q Consensus 69 ~l~~G~~aPdf~L~d~-~G~---~vsLsdl~~~~~g~vvLvffr~~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~d~~ 144 (186)
.+.+|+++|+|+.... .|+ +|+|+|+. ++++||+|+++...+.|-.|+.++++.|++|+++|++||+||.|+.
T Consensus 2 ~~lIg~~aP~F~~~a~~~~~~~~~i~l~d~~---gkw~VLff~P~DFTfVCpTEi~af~~~y~eF~~~g~eVigvS~Ds~ 78 (194)
T COG0450 2 MSLIGKKAPDFTANAVLGGEIFEEITLSDYY---GKWVVLFFYPADFTFVCPTEIIAFAKRYEEFQKRGVEVIGVSTDSV 78 (194)
T ss_pred ccccCCcCCCcEEEEEecCceeeEEechhhc---CcEEEEEeccCCCCccCcchHHHHHhhhHHHHHcCCEEEEEecCcH
Confidence 4678999999999988 775 99999986 5799999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH----hC-CeeeeEEEEcCCCCcccceeec
Q 029880 145 NKAQILAER----VG-NVFITQVLSLPLEVTPSLFKFH 177 (186)
Q Consensus 145 e~~~~f~~~----~~-~~l~fpvL~Dp~~~~~~~f~~~ 177 (186)
....+|.+. .+ ..++||+++|+++.+.+.||+-
T Consensus 79 fsH~aW~~~~~~~~gi~~i~~PmiaD~~~~vs~~ygvl 116 (194)
T COG0450 79 FSHKAWKATIREAGGIGKIKFPMIADPKGEIARAYGVL 116 (194)
T ss_pred HHHHHHHhcHHhcCCccceecceEEcCchhHHHHcCCc
Confidence 988888765 33 2279999999999999999874
No 43
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=99.61 E-value=1.8e-15 Score=139.46 Aligned_cols=101 Identities=15% Similarity=0.121 Sum_probs=87.3
Q ss_pred CCCCCCcCCeEEECCCCCEEecccccccCCCeEEEEEEcCCCCcchHHHHHHHHHHHHHhhhCCcEEEEEeCC------C
Q 029880 70 ANVGDLLGDFSIFTAAGEPVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVG------T 143 (186)
Q Consensus 70 l~~G~~aPdf~L~d~~G~~vsLsdl~~~~~g~vvLvffr~~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~d------~ 143 (186)
...++.+|+|++.|.+|+.+.++ +|++|||+||++||++|+.++|.|++++++++..|+.||+|+.+ +
T Consensus 32 ~~~~~~lP~f~l~D~dG~~v~ls------kGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~ 105 (521)
T PRK14018 32 ATVPHTLSTLKTADNRPASVYLK------KDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEKK 105 (521)
T ss_pred ccccCCCCCeEeecCCCceeecc------CCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEeccccccccc
Confidence 67778999999999999999986 35899999999999999999999999999999889999999863 2
Q ss_pred HHHHHHHHHHhCCee-eeEEEEcCCCCcccceeece
Q 029880 144 PNKAQILAERVGNVF-ITQVLSLPLEVTPSLFKFHV 178 (186)
Q Consensus 144 ~e~~~~f~~~~~~~l-~fpvL~Dp~~~~~~~f~~~~ 178 (186)
.+.+++|.+..+ + .||++.|.++.+.+.|++.+
T Consensus 106 ~~~~~~~~~~~~--y~~~pV~~D~~~~lak~fgV~g 139 (521)
T PRK14018 106 DGDFQKWYAGLD--YPKLPVLTDNGGTLAQSLNISV 139 (521)
T ss_pred HHHHHHHHHhCC--CcccceeccccHHHHHHcCCCC
Confidence 355777877777 6 58999999998888887654
No 44
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=99.60 E-value=7.4e-16 Score=120.94 Aligned_cols=85 Identities=14% Similarity=0.137 Sum_probs=68.4
Q ss_pred CEEecccccccCCCeEEEEEEcCCCCcchHHHHHHHHHHHHHhhhC-------CcEEEEEeCCCH-HHHHHHHHHhCCee
Q 029880 87 EPVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSA-------GVKLIAVGVGTP-NKAQILAERVGNVF 158 (186)
Q Consensus 87 ~~vsLsdl~~~~~g~vvLvffr~~wCp~C~~el~~L~~l~~ef~~~-------Gv~vVaIs~d~~-e~~~~f~~~~~~~l 158 (186)
+.++|+++ +|++++++|||+|||+|++++|.|.+++++++++ ++.||+|+.|.. +.+++|.++++ +
T Consensus 16 ~~~~ls~~----kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~--~ 89 (146)
T cd03008 16 EREIVARL----ENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMP--K 89 (146)
T ss_pred ccccHHHh----CCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCC--C
Confidence 46788888 6799999999999999999999999999988754 799999999964 56899999999 6
Q ss_pred eeEE---EEcCCCCcccceeec
Q 029880 159 ITQV---LSLPLEVTPSLFKFH 177 (186)
Q Consensus 159 ~fpv---L~Dp~~~~~~~f~~~ 177 (186)
.|+. ..+.++.+...|++.
T Consensus 90 ~~~~~p~~~~~~~~l~~~y~v~ 111 (146)
T cd03008 90 KWLFLPFEDEFRRELEAQFSVE 111 (146)
T ss_pred CceeecccchHHHHHHHHcCCC
Confidence 6533 333344666666654
No 45
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.58 E-value=3.4e-15 Score=147.49 Aligned_cols=105 Identities=12% Similarity=0.143 Sum_probs=91.6
Q ss_pred CCCCCCCcCCeEEEC--CCCCEEec-ccccccCCCeEEEEEEcCCCCcchHHHHHHHHHHHHHhhhCCcEEEEEeC---C
Q 029880 69 PANVGDLLGDFSIFT--AAGEPVLF-KDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGV---G 142 (186)
Q Consensus 69 ~l~~G~~aPdf~L~d--~~G~~vsL-sdl~~~~~g~vvLvffr~~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~---d 142 (186)
....|+.+|+|...+ .+|+++++ +++ +|+++|+.||++||++|+.++|.|++++++++++|+.||+|+. |
T Consensus 390 ~~~~g~~~p~f~~~~~~~~g~~~~l~~~l----kGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D 465 (1057)
T PLN02919 390 SKKTATKVPEFPPKLDWLNTAPLQFRRDL----KGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFD 465 (1057)
T ss_pred ccccCCcCCCCcccccccCCccccchhhc----CCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEeccccc
Confidence 356799999999876 78999998 577 6799999999999999999999999999999999999999974 2
Q ss_pred ---CHHHHHHHHHHhCCeeeeEEEEcCCCCcccceeeceE
Q 029880 143 ---TPNKAQILAERVGNVFITQVLSLPLEVTPSLFKFHVT 179 (186)
Q Consensus 143 ---~~e~~~~f~~~~~~~l~fpvL~Dp~~~~~~~f~~~~~ 179 (186)
+.+.+++|.++++ ++||++.|.++.+.+.|++..+
T Consensus 466 ~~~~~~~~~~~~~~~~--i~~pvv~D~~~~~~~~~~V~~i 503 (1057)
T PLN02919 466 NEKDLEAIRNAVLRYN--ISHPVVNDGDMYLWRELGVSSW 503 (1057)
T ss_pred ccccHHHHHHHHHHhC--CCccEEECCchHHHHhcCCCcc
Confidence 3467889999999 9999999999888888776543
No 46
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=99.56 E-value=2.1e-15 Score=114.13 Aligned_cols=71 Identities=15% Similarity=0.259 Sum_probs=60.0
Q ss_pred EECCCCCEEecccccccCCCeEEEEEEcCCCCcchHHHHHHHHHHHHHhhhC--CcEEEEEeCCCH-HHHHHHHHHhC
Q 029880 81 IFTAAGEPVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSA--GVKLIAVGVGTP-NKAQILAERVG 155 (186)
Q Consensus 81 L~d~~G~~vsLsdl~~~~~g~vvLvffr~~wCp~C~~el~~L~~l~~ef~~~--Gv~vVaIs~d~~-e~~~~f~~~~~ 155 (186)
|.|.+|+.++++++ +|+++|++||++||+.|+.+++.|++++++++++ ++.|++|+.|.. +..+++.++++
T Consensus 3 l~~~~G~~v~l~~~----~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~ 76 (131)
T cd03009 3 LLRNDGGKVPVSSL----EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMP 76 (131)
T ss_pred ccccCCCCccHHHh----CCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCC
Confidence 56889999999999 5789999999999999999999999999999876 799999999864 34555554443
No 47
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=99.50 E-value=2.4e-14 Score=108.94 Aligned_cols=89 Identities=17% Similarity=0.205 Sum_probs=68.2
Q ss_pred CC-CEEecccccccCCCeEEEEEEcCCCCcchHHHHHHHHHHHHHhhhC--CcEEEEEeCCC-HHHHHHHHHHhCCeeee
Q 029880 85 AG-EPVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSA--GVKLIAVGVGT-PNKAQILAERVGNVFIT 160 (186)
Q Consensus 85 ~G-~~vsLsdl~~~~~g~vvLvffr~~wCp~C~~el~~L~~l~~ef~~~--Gv~vVaIs~d~-~e~~~~f~~~~~~~l~f 160 (186)
+| ++++++++ +|+++|++||++||+.|+.+++.|+++++++++. ++.|++|+.+. .+.+++|.++++ .+..
T Consensus 5 ~~~~~v~l~~~----~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~-~~~~ 79 (132)
T cd02964 5 DGEGVVPVSAL----EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMP-PWLA 79 (132)
T ss_pred cCCccccHHHh----CCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCC-CeEe
Confidence 44 59999999 6799999999999999999999999999999875 89999999986 456888888874 1333
Q ss_pred EEEEcC--CCCcccceeece
Q 029880 161 QVLSLP--LEVTPSLFKFHV 178 (186)
Q Consensus 161 pvL~Dp--~~~~~~~f~~~~ 178 (186)
..+.|. .+.+.+.|++..
T Consensus 80 ~~~~d~~~~~~~~~~~~v~~ 99 (132)
T cd02964 80 VPFEDEELRELLEKQFKVEG 99 (132)
T ss_pred eccCcHHHHHHHHHHcCCCC
Confidence 333441 234555555544
No 48
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=99.49 E-value=4.7e-14 Score=114.61 Aligned_cols=102 Identities=11% Similarity=-0.015 Sum_probs=84.2
Q ss_pred CCCCCCCCcCCeEEECC-----CC-----CEEecccccccCCCeEEEEEEcCCCCcchHHHHHHHHHHHHHhhhCCcEE-
Q 029880 68 FPANVGDLLGDFSIFTA-----AG-----EPVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKL- 136 (186)
Q Consensus 68 ~~l~~G~~aPdf~L~d~-----~G-----~~vsLsdl~~~~~g~vvLvffr~~wCp~C~~el~~L~~l~~ef~~~Gv~v- 136 (186)
..+.+|+.+|.+++.|. +| +.++.+++ .|++.|++|||+||++|+.|.|.|.++ +++|+.+
T Consensus 21 ~~~~~~~~~p~v~~~~~ge~~~~~~~~~y~~~~~~~l----~GKV~lvn~~Aswc~~c~~e~P~l~~l----~~~~~~~~ 92 (184)
T TIGR01626 21 HNLQVEQSVPSVGVSEYGEIVLSGKDTVYQPWGSAEL----AGKVRVVHHIAGRTSAKEXNASLIDAI----KAAKFPPV 92 (184)
T ss_pred hhhhcCCcCCceEecCCceEEEcCCcccceeccHHHc----CCCEEEEEEEecCCChhhccchHHHHH----HHcCCCcc
Confidence 45788999999988764 44 45566677 689999999999999999999999998 6678888
Q ss_pred -----EEEeCCCH-----HHHHHHHHHhCCeeeeE---EEEcCCCCcccceeeceE
Q 029880 137 -----IAVGVGTP-----NKAQILAERVGNVFITQ---VLSLPLEVTPSLFKFHVT 179 (186)
Q Consensus 137 -----VaIs~d~~-----e~~~~f~~~~~~~l~fp---vL~Dp~~~~~~~f~~~~~ 179 (186)
++|+.++. ..++.|+++.+ ..|| ++.|+++.....|++...
T Consensus 93 ~y~~t~~IN~dd~~~~~~~fVk~fie~~~--~~~P~~~vllD~~g~v~~~~gv~~~ 146 (184)
T TIGR01626 93 KYQTTTIINADDAIVGTGMFVKSSAKKGK--KENPWSQVVLDDKGAVKNAWQLNSE 146 (184)
T ss_pred cccceEEEECccchhhHHHHHHHHHHHhc--ccCCcceEEECCcchHHHhcCCCCC
Confidence 99999863 33777888888 8888 999999988888887543
No 49
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=99.44 E-value=1.4e-13 Score=111.51 Aligned_cols=62 Identities=19% Similarity=0.344 Sum_probs=53.2
Q ss_pred CCCCCCcCCeEEECCCCCEEecccccccCCCeEEEEEEcCCCCcchHHHHHHHHHHHHHhhhCCcEEEEEeCCCH
Q 029880 70 ANVGDLLGDFSIFTAAGEPVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTP 144 (186)
Q Consensus 70 l~~G~~aPdf~L~d~~G~~vsLsdl~~~~~g~vvLvffr~~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~d~~ 144 (186)
+.+....|+|++. +|+.++++++ + |++||++|||+|++++|.|+++++++ |+.|++|+.|..
T Consensus 49 ~~~~~~~~~f~l~--dG~~v~lsd~----~----lV~FwaswCp~C~~e~P~L~~l~~~~---g~~Vi~Vs~D~~ 110 (181)
T PRK13728 49 RTEKPAPRWFRLS--NGRQVNLADW----K----VVLFMQGHCPYCHQFDPVLKQLAQQY---GFSVFPYTLDGQ 110 (181)
T ss_pred ccCCCCCCccCCC--CCCEeehhHc----e----EEEEECCCCHhHHHHHHHHHHHHHHc---CCEEEEEEeCCC
Confidence 3455677888885 9999999999 3 66799999999999999999999886 799999998743
No 50
>KOG0854 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=2e-12 Score=104.08 Aligned_cols=107 Identities=20% Similarity=0.219 Sum_probs=92.5
Q ss_pred CCCCCCCCcCCeEEECCCCCEEecccccccCCCeEEEEEEcCCCCcchHHHHHHHHHHHHHhhhCCcEEEEEeCCCHHH-
Q 029880 68 FPANVGDLLGDFSIFTAAGEPVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNK- 146 (186)
Q Consensus 68 ~~l~~G~~aPdf~L~d~~G~~vsLsdl~~~~~g~vvLvffr~~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~d~~e~- 146 (186)
..+.+|+.+|+|+..+..| .+.|.|+.+ ..+.||+-..+...|.|..|+.+++++.+||+.+||.+||.|+|+.+.
T Consensus 4 ~~l~lgd~~PNfea~Tt~g-~i~fhd~~g--dSW~vLFSHPaDFTPVCTTElgr~Akl~pEF~KRnvKlialS~d~vesH 80 (224)
T KOG0854|consen 4 PRLRLGDTVPNFEADTTVG-KIKFHDYLG--DSWGVLFSHPADFTPVCTTELGRFAKLAPEFDKRNVKLIALSVDDVESH 80 (224)
T ss_pred CcccccCcCCCcccccccc-ceehhhhcc--cceEEEecCcccCCcchhHHHHHHHhhChhhhhcCceEEEeehhhHHHH
Confidence 3578999999999977765 589999976 569999999999999999999999999999999999999999998765
Q ss_pred ------HHHHHHHhCCeeeeEEEEcCCCCcccceeec
Q 029880 147 ------AQILAERVGNVFITQVLSLPLEVTPSLFKFH 177 (186)
Q Consensus 147 ------~~~f~~~~~~~l~fpvL~Dp~~~~~~~f~~~ 177 (186)
++.|++..++.++||++.|+.+.++-+|++-
T Consensus 81 ~~Wi~DIks~~~~~~~~~~yPIIaD~~rela~~l~Ml 117 (224)
T KOG0854|consen 81 KDWIKDIKSYAKVKNHSVPYPIIADPNRELAFLLNML 117 (224)
T ss_pred HHHHHHHHHHHhccCCCCCCCeecCCchhhhhhhccc
Confidence 4555555555689999999999998888764
No 51
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=99.24 E-value=3.2e-11 Score=85.99 Aligned_cols=77 Identities=14% Similarity=0.192 Sum_probs=59.6
Q ss_pred CeEEEEEEcCCCCcchHHHHHHHHHHHHHhh-hCCcEEEEEeCCC-HHHHHHHHHHhCCeeeeEEEEcC---CCCcccce
Q 029880 100 GVAVVALLRHFGCPCCWELASALKESKARFD-SAGVKLIAVGVGT-PNKAQILAERVGNVFITQVLSLP---LEVTPSLF 174 (186)
Q Consensus 100 g~vvLvffr~~wCp~C~~el~~L~~l~~ef~-~~Gv~vVaIs~d~-~e~~~~f~~~~~~~l~fpvL~Dp---~~~~~~~f 174 (186)
|+++++.||++||+.|+++++.|.++++++. +.++++|+|+.|. .++.+++.++.+ .+++.+... ...+.+.|
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~ 78 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNN--FPWYNVPFDDDNNSELLKKY 78 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCT--TSSEEEETTTHHHHHHHHHT
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcC--CCceEEeeCcchHHHHHHHC
Confidence 5899999999999999999999999999998 8889999999997 467899999887 666665543 33444455
Q ss_pred eece
Q 029880 175 KFHV 178 (186)
Q Consensus 175 ~~~~ 178 (186)
++..
T Consensus 79 ~i~~ 82 (95)
T PF13905_consen 79 GING 82 (95)
T ss_dssp T-TS
T ss_pred CCCc
Confidence 5443
No 52
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=99.15 E-value=7.5e-11 Score=93.19 Aligned_cols=72 Identities=19% Similarity=0.265 Sum_probs=54.3
Q ss_pred CCCEEecccccccCCCeEEEEEEcCCCCcchHHHHHHHHHHHHHhhhCCcEEEEEeCCCHH-------------HHHHHH
Q 029880 85 AGEPVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPN-------------KAQILA 151 (186)
Q Consensus 85 ~G~~vsLsdl~~~~~g~vvLvffr~~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~d~~e-------------~~~~f~ 151 (186)
.|+.++++++ .|++||++|||+|++|+|.|+++++++ |+.|++|+.|+.. .+..+.
T Consensus 43 ~G~~~~l~~~--------~lvnFWAsWCppCr~e~P~L~~l~~~~---~~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~ 111 (153)
T TIGR02738 43 QGRHANQDDY--------ALVFFYQSTCPYCHQFAPVLKRFSQQF---GLPVYAFSLDGQGLTGFPDPLPATPEVMQTFF 111 (153)
T ss_pred cchhhhcCCC--------EEEEEECCCChhHHHHHHHHHHHHHHc---CCcEEEEEeCCCcccccccccCCchHHHHHHh
Confidence 4788887766 299999999999999999999999876 6899999988531 111221
Q ss_pred ---HHhCCeeeeEEEEcCCCC
Q 029880 152 ---ERVGNVFITQVLSLPLEV 169 (186)
Q Consensus 152 ---~~~~~~l~fpvL~Dp~~~ 169 (186)
.-.+ +|..++.|+++.
T Consensus 112 ~~~~v~~--iPTt~LID~~G~ 130 (153)
T TIGR02738 112 PNPRPVV--TPATFLVNVNTR 130 (153)
T ss_pred ccCCCCC--CCeEEEEeCCCC
Confidence 1235 688888998855
No 53
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.03 E-value=2.4e-10 Score=88.80 Aligned_cols=88 Identities=15% Similarity=0.131 Sum_probs=65.5
Q ss_pred EEECCCCCEEecccccccCCCeEEEEEEcCCCCcchHHHHHHHHHHHHHhhhCCcEEEEEeCCCHHHHHHHHHHhC-Cee
Q 029880 80 SIFTAAGEPVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKAQILAERVG-NVF 158 (186)
Q Consensus 80 ~L~d~~G~~vsLsdl~~~~~g~vvLvffr~~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~d~~e~~~~f~~~~~-~~l 158 (186)
+|++++++...+.+... .++++||+||+.||+.|+..++.|.++.+++.+ ++.++.|+.+..+ ...++++++ ..+
T Consensus 2 ~~~~~~~~~~~~~~a~~--~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~-~~~~v~v~vd~~~-~~~~~~~~~V~~i 77 (142)
T cd02950 2 SLEQLAASSTPPEVALS--NGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGD-QVNFVMLNVDNPK-WLPEIDRYRVDGI 77 (142)
T ss_pred ChHHHhhccCCHHHHHh--CCCEEEEEEECCcCHHHHHhHHHHHHHHHHhcc-CeeEEEEEcCCcc-cHHHHHHcCCCCC
Confidence 45677777788877654 578999999999999999999999999998865 3788999887642 234455555 115
Q ss_pred eeEEEEcCCCCcc
Q 029880 159 ITQVLSLPLEVTP 171 (186)
Q Consensus 159 ~fpvL~Dp~~~~~ 171 (186)
|.-++.|+++...
T Consensus 78 Pt~v~~~~~G~~v 90 (142)
T cd02950 78 PHFVFLDREGNEE 90 (142)
T ss_pred CEEEEECCCCCEE
Confidence 6667888766443
No 54
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.00 E-value=1.7e-09 Score=79.11 Aligned_cols=55 Identities=13% Similarity=0.045 Sum_probs=49.0
Q ss_pred CCeEEEEEEcCCCCcchHHHHHHHHHHHHHhhhCCcEEEEEeCCCHHHHHHHHHHhC
Q 029880 99 EGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKAQILAERVG 155 (186)
Q Consensus 99 ~g~vvLvffr~~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~d~~e~~~~f~~~~~ 155 (186)
+++++|+.||++||++|+..+|.|.++.+++ .++.++.|+.+..+....++++++
T Consensus 14 ~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~--~~v~~~~vd~d~~~~~~~l~~~~~ 68 (103)
T cd02985 14 KGRLVVLEFALKHSGPSVKIYPTMVKLSRTC--NDVVFLLVNGDENDSTMELCRREK 68 (103)
T ss_pred CCCEEEEEEECCCCHhHHHHhHHHHHHHHHC--CCCEEEEEECCCChHHHHHHHHcC
Confidence 4789999999999999999999999999998 578999999987766677888887
No 55
>KOG4498 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.95 E-value=1.2e-09 Score=88.48 Aligned_cols=102 Identities=31% Similarity=0.413 Sum_probs=90.0
Q ss_pred CCCCCCcCCeEEECCCCCEEecccccccCCCeEEEEEEcCCCCcchHHHHHHHHHHHHHhhhCCcEEEEEeCCCHHHHHH
Q 029880 70 ANVGDLLGDFSIFTAAGEPVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKAQI 149 (186)
Q Consensus 70 l~~G~~aPdf~L~d~~G~~vsLsdl~~~~~g~vvLvffr~~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~d~~e~~~~ 149 (186)
+.+|+...+ .+..|+.|.+.+||+ +++.+|.+.|+++|-.||++..+|.++.+-+++.|+.+|+|..+...+...
T Consensus 26 p~~~q~~a~---l~~rg~~vp~~~L~~--~~~avV~~vRrpgCvlCR~~aadLa~l~~~ld~~Gv~Li~vg~g~~~~~~~ 100 (197)
T KOG4498|consen 26 PMIGQLPAN---LDSRGESVPVTSLFK--ERSAVVAFVRRPGCVLCREEAADLASLKDLLDELGVVLIAVGPGSHVQFED 100 (197)
T ss_pred ccccccchh---hhhcCceeehHHhhh--cCCeEEEEeccCcEEEeHHHHHHHHHHHHHHHHhCCEEEEEeccceeecch
Confidence 344543333 688999999999998 679999999999999999999999999888999999999999999999999
Q ss_pred HHHHhCCeeeeEEEEcCCCCcccceeece
Q 029880 150 LAERVGNVFITQVLSLPLEVTPSLFKFHV 178 (186)
Q Consensus 150 f~~~~~~~l~fpvL~Dp~~~~~~~f~~~~ 178 (186)
|.++.. +.=.|+.|+++.++...++..
T Consensus 101 f~~q~~--f~gevylD~~~~~Y~~le~k~ 127 (197)
T KOG4498|consen 101 FWDQTY--FSGEVYLDPHRGFYKPLEFKR 127 (197)
T ss_pred hhcccC--cceeEEEcCccceechhhhhc
Confidence 999888 777999999999988777665
No 56
>COG2077 Tpx Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=98.92 E-value=7e-09 Score=81.55 Aligned_cols=105 Identities=15% Similarity=0.193 Sum_probs=91.3
Q ss_pred CcCCCCCCCCcCCeEEECCCCCEEecccccccCCCeEEEEEEcCCCCcchHHHHHHHHHHHHHhhhCCcEEEEEeCCCHH
Q 029880 66 TEFPANVGDLLGDFSIFTAAGEPVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPN 145 (186)
Q Consensus 66 ~~~~l~~G~~aPdf~L~d~~G~~vsLsdl~~~~~g~vvLvffr~~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~d~~e 145 (186)
....+++|+.+|+|++.+.+.+.++|+++. +++.||..|+.-..|.|..+...+++...++.+ +.|+.||.|-+=
T Consensus 14 ~g~~~~vGd~ap~ftl~~~dL~~v~l~~~~---gk~~vi~v~PSiDT~VC~~qvr~Fn~~aa~~~~--~~Vl~IS~DLPF 88 (158)
T COG2077 14 KGNEPQVGDKAPDFTLVGKDLNDVSLADFA---GKKKVISVFPSIDTPVCATQVRKFNEEAAKLGN--TVVLCISMDLPF 88 (158)
T ss_pred cCCCCccCCcCCceEEEcCcccceeccccC---CceEEEEEccCCCCchhhHHHHHHHHHHhccCC--cEEEEEeCCChh
Confidence 345689999999999999999999999995 568899999999999999999999998887654 889999999999
Q ss_pred HHHHHHHHhCCeee-eEEEEcC-CCCcccceeec
Q 029880 146 KAQILAERVGNVFI-TQVLSLP-LEVTPSLFKFH 177 (186)
Q Consensus 146 ~~~~f~~~~~~~l~-fpvL~Dp-~~~~~~~f~~~ 177 (186)
..++|+..+| +. -..|||- ++.+.+.||+.
T Consensus 89 Aq~RfC~aeG--i~nv~~lSd~r~~~Fge~yGv~ 120 (158)
T COG2077 89 AQKRFCGAEG--IENVITLSDFRDRAFGENYGVL 120 (158)
T ss_pred HHhhhhhhcC--cccceEhhhhhhhhhhHhhCEE
Confidence 9999999999 85 7788884 55566777764
No 57
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=98.92 E-value=1.2e-08 Score=81.72 Aligned_cols=87 Identities=22% Similarity=0.373 Sum_probs=72.7
Q ss_pred CCCCcCCeEEECCCCCEEecccccccCCCeEEEEEEcCCCCc-chHHHHHHHHHHHHHhhhC--CcEEEEEeCC----CH
Q 029880 72 VGDLLGDFSIFTAAGEPVLFKDLWDQNEGVAVVALLRHFGCP-CCWELASALKESKARFDSA--GVKLIAVGVG----TP 144 (186)
Q Consensus 72 ~G~~aPdf~L~d~~G~~vsLsdl~~~~~g~vvLvffr~~wCp-~C~~el~~L~~l~~ef~~~--Gv~vVaIs~d----~~ 144 (186)
.....|+|+|.|.+|+.++++++ +|+++|++|-.+.|| .|-..+..|+++.+++.+. .+++|.|+.| ++
T Consensus 28 ~~~~~~~f~L~d~~G~~~~~~~~----~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvDP~~DTp 103 (174)
T PF02630_consen 28 NPRIVPDFTLTDQDGKTVTLDDL----KGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVDPERDTP 103 (174)
T ss_dssp TSCSSST-EEEETTSSEEEGGGG----TTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESSTTTC-H
T ss_pred CCccCCCcEEEcCCCCEecHHHh----CCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeCCCCCCH
Confidence 45567899999999999999999 678989999999997 7999999999999998864 6899999987 36
Q ss_pred HHHHHHHHHhCCeeeeEEEE
Q 029880 145 NKAQILAERVGNVFITQVLS 164 (186)
Q Consensus 145 e~~~~f~~~~~~~l~fpvL~ 164 (186)
+.+++|++.++ ..|.-+.
T Consensus 104 ~~L~~Y~~~~~--~~~~~lt 121 (174)
T PF02630_consen 104 EVLKKYAKKFG--PDFIGLT 121 (174)
T ss_dssp HHHHHHHHCHT--TTCEEEE
T ss_pred HHHHHHHHhcC--CCcceeE
Confidence 88999999998 6666554
No 58
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=98.87 E-value=1.5e-09 Score=85.91 Aligned_cols=97 Identities=11% Similarity=0.157 Sum_probs=75.6
Q ss_pred eEEECCCCCEEecccccccCCCeEEEEEEcCCCCcchHHHHHHHHHHHHHhhhCC--cEEEEEeCCCH-HHHHHHHHHhC
Q 029880 79 FSIFTAAGEPVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAG--VKLIAVGVGTP-NKAQILAERVG 155 (186)
Q Consensus 79 f~L~d~~G~~vsLsdl~~~~~g~vvLvffr~~wCp~C~~el~~L~~l~~ef~~~G--v~vVaIs~d~~-e~~~~f~~~~~ 155 (186)
..|...+|..+..++.+ .|++|.+.|.+.|||+||...|.|.++|+++++.+ +.||-||.|.. +....|...++
T Consensus 15 ~~l~~~~~~~~~~~~~l---~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~ 91 (157)
T KOG2501|consen 15 NRLRKQDGTEVLASEAL---QGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHH 91 (157)
T ss_pred CeeeccCCccchHhHhh---CCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcC
Confidence 56788899999998655 67999999999999999999999999999998775 78999999975 55888888877
Q ss_pred Ceeee-EEEEcCCCCcccceeece
Q 029880 156 NVFIT-QVLSLPLEVTPSLFKFHV 178 (186)
Q Consensus 156 ~~l~f-pvL~Dp~~~~~~~f~~~~ 178 (186)
+++.+ |.-.|-.+.+...|.+..
T Consensus 92 ~~W~~iPf~d~~~~~l~~ky~v~~ 115 (157)
T KOG2501|consen 92 GDWLAIPFGDDLIQKLSEKYEVKG 115 (157)
T ss_pred CCeEEecCCCHHHHHHHHhcccCc
Confidence 33332 333334556666666654
No 59
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=98.86 E-value=2.2e-08 Score=74.97 Aligned_cols=80 Identities=18% Similarity=0.309 Sum_probs=70.1
Q ss_pred CeEEECCCCCEEecccccccCCCeEEEEEEcCCCCcchHHHHHHHHHHHHHhhhCCcEEEEEeCC--------CHHHHHH
Q 029880 78 DFSIFTAAGEPVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVG--------TPNKAQI 149 (186)
Q Consensus 78 df~L~d~~G~~vsLsdl~~~~~g~vvLvffr~~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~d--------~~e~~~~ 149 (186)
+|++.|.+|+.++|+++ +|+++||.--|+-|+.-. +...|++++++|.++|..|+|+-++ +.++++.
T Consensus 3 df~~~~~~G~~v~l~~y----~Gkv~LIVNvAs~Cg~t~-qy~~L~~L~~ky~~~gl~ILaFPcnqFg~QEp~~~~ei~~ 77 (108)
T PF00255_consen 3 DFSAKDIDGKPVSLSKY----KGKVLLIVNVASKCGYTK-QYKQLNELYEKYKDKGLEILAFPCNQFGNQEPGSNEEIKE 77 (108)
T ss_dssp GSEEEBTTSSEEEGGGG----TTSEEEEEEEESSSTTHH-HHHHHHHHHHHHGGGTEEEEEEEBSTTTTTTSSCHHHHHH
T ss_pred ceeeeCCCCCEECHHHc----CCCEEEEEecccccCCcc-ccHHHHHHHHHHhcCCeEEEeeehHHhccccCCCHHHHHH
Confidence 68999999999999999 577787777899999999 9999999999999999999998664 4577999
Q ss_pred HHHH-hCCeeeeEEEE
Q 029880 150 LAER-VGNVFITQVLS 164 (186)
Q Consensus 150 f~~~-~~~~l~fpvL~ 164 (186)
|+.. ++ ..|||..
T Consensus 78 ~~~~~~~--~~F~vf~ 91 (108)
T PF00255_consen 78 FCKEKFG--VTFPVFE 91 (108)
T ss_dssp HHCHCHT---SSEEBS
T ss_pred HHHhccC--CcccceE
Confidence 9976 78 9999974
No 60
>KOG0852 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=98.85 E-value=1.3e-08 Score=81.92 Aligned_cols=103 Identities=11% Similarity=-0.004 Sum_probs=82.4
Q ss_pred CCCCCcCCeEEE---CCCCCEEecccccccCCCeEEEEEEcCCCCcchHHHHHHHHHHHHHhhhCCcEEEEEeCCCHHHH
Q 029880 71 NVGDLLGDFSIF---TAAGEPVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKA 147 (186)
Q Consensus 71 ~~G~~aPdf~L~---d~~G~~vsLsdl~~~~~g~vvLvffr~~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~d~~e~~ 147 (186)
.+..++|+|.-. |-.-+.++|+|+. ++.+++.|+...+.-.|-.|+-++.+.+++|++.|.+||++|+|+....
T Consensus 5 ~~~~p~p~fk~~aVVdG~f~e~~L~dy~---gkyvvlfFyplDftfVcPteIiafSd~~~eF~~~n~eVig~S~DS~fsh 81 (196)
T KOG0852|consen 5 VVFKPAPDFKGTAVVDGEFKEIKLSDYK---GKYVVLFFYPLDFTFVCPTEIIAFSDRAPEFRKLNTEVLGISTDSVFSH 81 (196)
T ss_pred ccCCCCCCcceeEEEcCcceEEeehhhc---ccEEEEEecCCceeeECchhhhhhhhhHHHHHhcCCeEEEEeccchhhh
Confidence 445566777543 4455899999994 3455556666889999999999999999999999999999999999887
Q ss_pred HHHH----HHhC-CeeeeEEEEcCCCCcccceee
Q 029880 148 QILA----ERVG-NVFITQVLSLPLEVTPSLFKF 176 (186)
Q Consensus 148 ~~f~----~~~~-~~l~fpvL~Dp~~~~~~~f~~ 176 (186)
.+|. ++.| +++++|+|+|.+..+.+.||+
T Consensus 82 lAW~ntprk~gGlg~~~iPllsD~~~~IsrdyGv 115 (196)
T KOG0852|consen 82 LAWINTPRKQGGLGPLNIPLLSDLNHEISRDYGV 115 (196)
T ss_pred hhHhcCchhhCCcCccccceeeccchhhHHhcCc
Confidence 7775 3334 446799999999999999986
No 61
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=1.8e-08 Score=79.52 Aligned_cols=102 Identities=16% Similarity=0.259 Sum_probs=84.8
Q ss_pred cCCeEEECCCCCEEecccccccCCCeEEEEEEcCCCCcchHHHHHHHHHHHHHhhhCCcEEEEEeCC--------CHHHH
Q 029880 76 LGDFSIFTAAGEPVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVG--------TPNKA 147 (186)
Q Consensus 76 aPdf~L~d~~G~~vsLsdl~~~~~g~vvLvffr~~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~d--------~~e~~ 147 (186)
+=||++.|.+|++++|+++ +|++|||.--|+.|++-- |...|..+|++|+++|..|++.-++ +.+++
T Consensus 5 ~yd~~~~~~~G~~~~l~~~----~GkVlLIVNtASkCGfTp-QYegLe~Ly~ky~~~Gf~VLgFPcNQF~~QEPg~~eEI 79 (162)
T COG0386 5 IYDFSVKDIDGEPVSLSDY----KGKVLLIVNTASKCGFTP-QYEGLEALYKKYKDKGFEVLGFPCNQFGGQEPGSDEEI 79 (162)
T ss_pred cccceeeccCCCCccHHHh----CCcEEEEEEcccccCCcH-hHHHHHHHHHHHhhCCcEEEeccccccccCCCCCHHHH
Confidence 4589999999999999998 689999999999999987 8889999999999999999998764 57889
Q ss_pred HHHHH-HhCCeeeeEEEE--cCCC------------Ccc---cceeeceEEEeee
Q 029880 148 QILAE-RVGNVFITQVLS--LPLE------------VTP---SLFKFHVTYVKYV 184 (186)
Q Consensus 148 ~~f~~-~~~~~l~fpvL~--Dp~~------------~~~---~~f~~~~~~~~~~ 184 (186)
++|++ .+| ++|||+. |-++ ..+ ..=.|.|-|+||+
T Consensus 80 ~~fC~~~Yg--VtFp~f~Ki~VnG~~a~PLy~~L~~~~~g~~~~~~IkWNFtKFL 132 (162)
T COG0386 80 AKFCQLNYG--VTFPMFSKIDVNGKNAHPLYKYLKEQKPGKLGGKDIKWNFTKFL 132 (162)
T ss_pred HHHHHhccC--ceeeeeeEEeecCCCCCcHHHHHHhcCCCCccCCccceeeEEEE
Confidence 99985 779 9999985 3332 111 1245889999986
No 62
>COG0678 AHP1 Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=98.74 E-value=2.8e-08 Score=78.19 Aligned_cols=107 Identities=20% Similarity=0.140 Sum_probs=90.4
Q ss_pred CCCCCCcCCeEEECC------CC-CEEecccccccCCCeEEEEEEcCCCCcchHH-HHHHHHHHHHHhhhCCcE-EEEEe
Q 029880 70 ANVGDLLGDFSIFTA------AG-EPVLFKDLWDQNEGVAVVALLRHFGCPCCWE-LASALKESKARFDSAGVK-LIAVG 140 (186)
Q Consensus 70 l~~G~~aPdf~L~d~------~G-~~vsLsdl~~~~~g~vvLvffr~~wCp~C~~-el~~L~~l~~ef~~~Gv~-vVaIs 140 (186)
..+|+++|..++.+. +| ..++..++.+ ++++||.-.++...|.|.. ++|.+.+++++|+++||+ |+.|+
T Consensus 3 ~~vg~klP~vtf~tr~~~~~~~~~~~~ts~~lf~--gKkVvlf~lPGAFTPTCS~~hlPgY~~~~d~f~~kGVD~I~cVS 80 (165)
T COG0678 3 IMVGKKLPAVTFKTRVGDETADGWVDVTTDDLFK--GKKVVLFSLPGAFTPTCSSSHLPGYLELADEFKAKGVDEIYCVS 80 (165)
T ss_pred cccCCcCCceEeEEeeccccCCCcccccHHHhcC--CCEEEEEeCCCccCCCcccccCccHHHHHHHHHHcCCceEEEEE
Confidence 578999999998865 22 4566677764 6789999999999999998 999999999999999995 88899
Q ss_pred CCCHHHHHHHHHHhCCeeeeEEEEcCCCCcccceeece
Q 029880 141 VGTPNKAQILAERVGNVFITQVLSLPLEVTPSLFKFHV 178 (186)
Q Consensus 141 ~d~~e~~~~f~~~~~~~l~fpvL~Dp~~~~~~~f~~~~ 178 (186)
+++.-.+.+|++..+..=...++.|.++.+-+.+|+..
T Consensus 81 VND~FVm~AWak~~g~~~~I~fi~Dg~geFTk~~Gm~~ 118 (165)
T COG0678 81 VNDAFVMNAWAKSQGGEGNIKFIPDGNGEFTKAMGMLV 118 (165)
T ss_pred eCcHHHHHHHHHhcCCCccEEEecCCCchhhhhcCcee
Confidence 99999999999998833357899999999988887754
No 63
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=98.74 E-value=2.5e-08 Score=72.85 Aligned_cols=65 Identities=17% Similarity=0.163 Sum_probs=47.7
Q ss_pred CCeEEEEEEcCCCCcchHHHHHHHHHHHHHhhhCCcEEEEEeCCCHHHHHHHHHHhC-CeeeeEEEEcCC
Q 029880 99 EGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKAQILAERVG-NVFITQVLSLPL 167 (186)
Q Consensus 99 ~g~vvLvffr~~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~d~~e~~~~f~~~~~-~~l~fpvL~Dp~ 167 (186)
+|+++|+.||++||++|+..+|.|.++.+++. ++.++.|..++ .....+++++ ..+|.-++.+.+
T Consensus 17 ~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~--~~~~~~vd~~~--~~~~l~~~~~V~~~PT~~lf~~g 82 (100)
T cd02999 17 REDYTAVLFYASWCPFSASFRPHFNALSSMFP--QIRHLAIEESS--IKPSLLSRYGVVGFPTILLFNST 82 (100)
T ss_pred CCCEEEEEEECCCCHHHHhHhHHHHHHHHHhc--cCceEEEECCC--CCHHHHHhcCCeecCEEEEEcCC
Confidence 67999999999999999999999999999885 57888887662 1224445655 013444566654
No 64
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=98.74 E-value=3.1e-08 Score=72.21 Aligned_cols=50 Identities=14% Similarity=0.121 Sum_probs=42.8
Q ss_pred CCeEEEEEEcCCCCcchHHHHHHHHHHHHHhhhCCcEEEEEeCCCHHHHH
Q 029880 99 EGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKAQ 148 (186)
Q Consensus 99 ~g~vvLvffr~~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~d~~e~~~ 148 (186)
.++.+|+.||++||++|+..++.|.++++++.+.++.++.|+.+..+.++
T Consensus 16 ~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d~~~~~~ 65 (102)
T cd02948 16 NKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEADTIDTLK 65 (102)
T ss_pred cCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCCCHHHHH
Confidence 46788999999999999999999999999998777889999998554443
No 65
>KOG0541 consensus Alkyl hydroperoxide reductase/peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=6.9e-08 Score=76.39 Aligned_cols=109 Identities=19% Similarity=0.224 Sum_probs=91.1
Q ss_pred CcCCCCCCCCcCC--eEE-ECCC----CCEEecccccccCCCeEEEEEEcCCCCcc-hHHHHHHHHHHHHHhhhCCcE-E
Q 029880 66 TEFPANVGDLLGD--FSI-FTAA----GEPVLFKDLWDQNEGVAVVALLRHFGCPC-CWELASALKESKARFDSAGVK-L 136 (186)
Q Consensus 66 ~~~~l~~G~~aPd--f~L-~d~~----G~~vsLsdl~~~~~g~vvLvffr~~wCp~-C~~el~~L~~l~~ef~~~Gv~-v 136 (186)
...++.+|+.+|+ .++ .|.. |.++.++++.+ +++++|+=.++...|. |..++|.+.+..++|+++||+ |
T Consensus 5 ~~a~i~vGd~~p~~~is~~~~~~~~~~~~tv~~~~l~~--GKKvIifGvPgAFtPtCs~~HvPGyi~~a~elksKGVd~i 82 (171)
T KOG0541|consen 5 VMAPIAVGDTLPSGTISLFEDEPEQLQGNTVNVSSLFK--GKKVILFGVPGAFTPTCSSSHVPGYIEKADELKSKGVDEI 82 (171)
T ss_pred ccccccccCccccccchhhccCccccccceEEhHHhcC--CceEEEEcCCCccCCccccccCchHHHHHHHHHhcCCcEE
Confidence 4457889999999 553 3322 23899999985 5689999999999999 789999999999999999996 7
Q ss_pred EEEeCCCHHHHHHHHHHhCCee--eeEEEEcCCCCcccceeece
Q 029880 137 IAVGVGTPNKAQILAERVGNVF--ITQVLSLPLEVTPSLFKFHV 178 (186)
Q Consensus 137 VaIs~d~~e~~~~f~~~~~~~l--~fpvL~Dp~~~~~~~f~~~~ 178 (186)
|.|+.+++=.+++|++.++ . .--+++|+++.+.+.+++..
T Consensus 83 icvSVnDpFv~~aW~k~~g--~~~~V~f~aD~~g~ftk~lglel 124 (171)
T KOG0541|consen 83 ICVSVNDPFVMKAWAKSLG--ANDHVKFVADPAGEFTKSLGLEL 124 (171)
T ss_pred EEEecCcHHHHHHHHhhcC--ccceEEEEecCCCceeeecccee
Confidence 7789999999999999988 6 56789999999998887653
No 66
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=98.64 E-value=8e-08 Score=71.23 Aligned_cols=54 Identities=20% Similarity=0.345 Sum_probs=45.6
Q ss_pred CCeEEEEEEcCCCCcchHHHHHHHHHHHHHhhhCCcEEEEEeCCCHHHHHHHHHHhC
Q 029880 99 EGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKAQILAERVG 155 (186)
Q Consensus 99 ~g~vvLvffr~~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~d~~e~~~~f~~~~~ 155 (186)
+++++||.||+.||+.|+...|.+.++.+++++.++.+..|+.+.... .+++++
T Consensus 23 ~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~~---l~~~~~ 76 (111)
T cd02963 23 FKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHERR---LARKLG 76 (111)
T ss_pred CCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccccHH---HHHHcC
Confidence 468999999999999999999999999999988789999998886443 344555
No 67
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=98.63 E-value=9.1e-08 Score=68.13 Aligned_cols=65 Identities=20% Similarity=0.172 Sum_probs=48.6
Q ss_pred CCeEEEEEEcCCCCcchHHHHHHHHHHHHHhhhCCcEEEEEeCCCHHHHHHHHHHhC-CeeeeEEEEcCC
Q 029880 99 EGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKAQILAERVG-NVFITQVLSLPL 167 (186)
Q Consensus 99 ~g~vvLvffr~~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~d~~e~~~~f~~~~~-~~l~fpvL~Dp~ 167 (186)
+++.+|+.||+.||+.|+...+.|.++..++.+ ++.++.|+.+.... ++++++ ..+|.-++.+..
T Consensus 11 ~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~---l~~~~~i~~~Pt~~~~~~g 76 (96)
T cd02956 11 TQVPVVVDFWAPRSPPSKELLPLLERLAEEYQG-QFVLAKVNCDAQPQ---IAQQFGVQALPTVYLFAAG 76 (96)
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHHHHhCC-cEEEEEEeccCCHH---HHHHcCCCCCCEEEEEeCC
Confidence 367999999999999999999999999999865 47888898887543 344444 114555556633
No 68
>KOG1651 consensus Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=1.7e-07 Score=74.84 Aligned_cols=104 Identities=16% Similarity=0.189 Sum_probs=85.3
Q ss_pred CcCCeEEECCCCCEEecccccccCCCeEEEEEEcCCCCcchHHHHHHHHHHHHHhhhCCcEEEEEeCC--------CHHH
Q 029880 75 LLGDFSIFTAAGEPVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVG--------TPNK 146 (186)
Q Consensus 75 ~aPdf~L~d~~G~~vsLsdl~~~~~g~vvLvffr~~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~d--------~~e~ 146 (186)
.+=+|+..|.+|+.|+|+.+ +|+++|+.-=|+.|++-..+-.+|++++++|+++|..|+|.-++ ..++
T Consensus 13 siydf~~~d~~G~~v~l~~y----rGkV~LiVNVAS~Cg~T~~~Y~~l~~L~~ky~~~Gl~ILaFPCNQFg~QEp~~n~E 88 (171)
T KOG1651|consen 13 SIYDFSAKDLDGEYVSLSQY----RGKVVLIVNVASQCGLTESQYTELNELYEKYKDQGLEILAFPCNQFGNQEPGSNEE 88 (171)
T ss_pred ceeeeEEecCCCCCccHHHh----CCeEEEEEEcccccccchhcchhHHHHHHHHhhCCeEEEEeccccccCcCCCCcHH
Confidence 46689999999999999999 67888888889999999988899999999999999999998764 3567
Q ss_pred HHHHH-HHhCCeeeeEEEE--cCCCCccc-c-------------eeeceEEEeee
Q 029880 147 AQILA-ERVGNVFITQVLS--LPLEVTPS-L-------------FKFHVTYVKYV 184 (186)
Q Consensus 147 ~~~f~-~~~~~~l~fpvL~--Dp~~~~~~-~-------------f~~~~~~~~~~ 184 (186)
+..|+ .+++ ..|||+. |-++.-++ + -.|.|-|+||+
T Consensus 89 i~~f~~~r~~--~~f~if~KidVNG~~~~PlykfLK~~~~~~lg~~IkWNF~KFL 141 (171)
T KOG1651|consen 89 ILNFVKVRYG--AEFPIFQKIDVNGDNADPLYKFLKKVKGGPLGDDIKWNFTKFL 141 (171)
T ss_pred HHHHHHhccC--CCCccEeEEecCCCCCchHHHHHhhcCCCcccccceeeeEEEe
Confidence 77877 6778 8899984 44442111 1 17899999985
No 69
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=98.58 E-value=6.2e-08 Score=83.07 Aligned_cols=76 Identities=20% Similarity=0.305 Sum_probs=56.2
Q ss_pred CCCEEecccccccCCCeEEEEEEcCCCCcchHHHHHHHHHHHHHhhhCCcEEEEEeCCCHHH--------HHHHHHHhC-
Q 029880 85 AGEPVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNK--------AQILAERVG- 155 (186)
Q Consensus 85 ~G~~vsLsdl~~~~~g~vvLvffr~~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~d~~e~--------~~~f~~~~~- 155 (186)
.++...++++ .|+++|++||++||++|+.++|.|+++.+++ |+.|++|+.|.... -...++++|
T Consensus 155 ~~~~~~l~~l----~~k~~Lv~F~AswCp~C~~~~P~L~~la~~y---g~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV 227 (271)
T TIGR02740 155 KQKDRVMKDL----AKKSGLFFFFKSDCPYCHQQAPILQAFEDRY---GIEVLPVSVDGGPLPGFPNARPDAGQAQQLKI 227 (271)
T ss_pred HHHHHHHHHh----cCCeEEEEEECCCCccHHHHhHHHHHHHHHc---CcEEEEEeCCCCccccCCcccCCHHHHHHcCC
Confidence 3445777887 5688999999999999999999999998886 68999999985310 123345555
Q ss_pred CeeeeEEEEcCC
Q 029880 156 NVFITQVLSLPL 167 (186)
Q Consensus 156 ~~l~fpvL~Dp~ 167 (186)
..+|--+|.|++
T Consensus 228 ~~vPtl~Lv~~~ 239 (271)
T TIGR02740 228 RTVPAVFLADPD 239 (271)
T ss_pred CcCCeEEEEECC
Confidence 114566778874
No 70
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=98.57 E-value=2e-07 Score=68.62 Aligned_cols=45 Identities=16% Similarity=0.336 Sum_probs=41.2
Q ss_pred CCeEEEEEEcCCCCcchHHHHHHHHHHHHHhhhCCcEEEEEeCCC
Q 029880 99 EGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGT 143 (186)
Q Consensus 99 ~g~vvLvffr~~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~d~ 143 (186)
.++++|+.||+.||++|+...+.+.++..++++.++.+..|..+.
T Consensus 20 ~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~ 64 (109)
T cd02993 20 RNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADG 64 (109)
T ss_pred cCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCc
Confidence 357899999999999999999999999999998789999999886
No 71
>PF05988 DUF899: Bacterial protein of unknown function (DUF899); InterPro: IPR010296 This family consists of uncharacterised bacterial proteins of unknown function which are thioredoxin-like.
Probab=98.57 E-value=6.1e-07 Score=74.24 Aligned_cols=105 Identities=16% Similarity=0.174 Sum_probs=85.2
Q ss_pred cCCCCCCCCcCCeEEECCCCCEEecccccccCCCeEEEEEEc-----CCCCcchHHHHHHHHHHHHHhhhCCcEEEEEeC
Q 029880 67 EFPANVGDLLGDFSIFTAAGEPVLFKDLWDQNEGVAVVALLR-----HFGCPCCWELASALKESKARFDSAGVKLIAVGV 141 (186)
Q Consensus 67 ~~~l~~G~~aPdf~L~d~~G~~vsLsdl~~~~~g~vvLvffr-----~~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~ 141 (186)
...|..+..-.+..+...+|+ ++|.||.+. +...+|+.|. ..+|+.|...+..++....-+.++++.+++|+.
T Consensus 37 RR~LP~v~v~~~Y~F~g~~G~-v~L~dLF~G-r~qLivyhfM~~p~~~~~C~gCs~~~D~~~g~l~hL~~rd~tfa~vSr 114 (211)
T PF05988_consen 37 RRRLPMVEVDKDYVFDGPDGP-VSLADLFEG-RRQLIVYHFMFGPDWDEGCPGCSFWADHIDGALRHLHARDTTFAVVSR 114 (211)
T ss_pred HhhCCCccCCCCeEEeCCCCc-ccHHHHcCC-CceEEEEeeccCCCCCCCCCchhhhHhhhhhhHHHHHhCCceEEEEeC
Confidence 345556666667888888887 999999862 2345555554 569999999999998888999999999999999
Q ss_pred CCHHHHHHHHHHhCCeeeeEEEEcCCCCccccee
Q 029880 142 GTPNKAQILAERVGNVFITQVLSLPLEVTPSLFK 175 (186)
Q Consensus 142 d~~e~~~~f~~~~~~~l~fpvL~Dp~~~~~~~f~ 175 (186)
.+.+++..|+++.| +.||.+|.-+..+..-|+
T Consensus 115 aP~~~i~afk~rmG--W~~pw~Ss~gs~Fn~D~~ 146 (211)
T PF05988_consen 115 APLEKIEAFKRRMG--WTFPWYSSYGSDFNYDFG 146 (211)
T ss_pred CCHHHHHHHHHhcC--CCceEEEcCCCccccccc
Confidence 99999999999999 999999987665444443
No 72
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=98.52 E-value=4.4e-07 Score=65.81 Aligned_cols=71 Identities=20% Similarity=0.141 Sum_probs=52.4
Q ss_pred CCeEEEEEEcCCCCcchHHHHHHH---HHHHHHhhhCCcEEEEEeCCC-HHHHHHHHHHhC-CeeeeEEEEcC-CCCc
Q 029880 99 EGVAVVALLRHFGCPCCWELASAL---KESKARFDSAGVKLIAVGVGT-PNKAQILAERVG-NVFITQVLSLP-LEVT 170 (186)
Q Consensus 99 ~g~vvLvffr~~wCp~C~~el~~L---~~l~~ef~~~Gv~vVaIs~d~-~e~~~~f~~~~~-~~l~fpvL~Dp-~~~~ 170 (186)
.++.+||.||+.||++|+...+.+ .++.+.+++ ++.++.|+.+. .+....++++++ ..+|.-++.|+ ++..
T Consensus 10 ~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~~~~~~~g~~ 86 (104)
T cd02953 10 QGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKK-DVVLLRADWTKNDPEITALLKRFGVFGPPTYLFYGPGGEPE 86 (104)
T ss_pred cCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhC-CeEEEEEecCCCCHHHHHHHHHcCCCCCCEEEEECCCCCCC
Confidence 568899999999999999999887 567777765 89999998874 333567777776 11455566776 5543
No 73
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=98.50 E-value=3.8e-07 Score=68.37 Aligned_cols=68 Identities=19% Similarity=0.313 Sum_probs=48.8
Q ss_pred CC-eEEEEEEcCCCCcchHHHHHHHH---HHHHHhhhCCcEEEEEeCCCHH----------HHHHHHHHhC-CeeeeEEE
Q 029880 99 EG-VAVVALLRHFGCPCCWELASALK---ESKARFDSAGVKLIAVGVGTPN----------KAQILAERVG-NVFITQVL 163 (186)
Q Consensus 99 ~g-~vvLvffr~~wCp~C~~el~~L~---~l~~ef~~~Gv~vVaIs~d~~e----------~~~~f~~~~~-~~l~fpvL 163 (186)
++ +++|++||++||++|+...+.+. ++.+.++ .++.++.|+.+... ..++++.+++ ..+|.-++
T Consensus 12 ~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~-~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v~~~Pt~~~ 90 (125)
T cd02951 12 DGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIR-AHFVVVYINIDGDKEVTDFDGEALSEKELARKYRVRFTPTVIF 90 (125)
T ss_pred cCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHH-hheEEEEEEccCCceeeccCCCCccHHHHHHHcCCccccEEEE
Confidence 56 78999999999999999999885 4555555 47888889887531 1244555554 11567788
Q ss_pred EcCC
Q 029880 164 SLPL 167 (186)
Q Consensus 164 ~Dp~ 167 (186)
.|++
T Consensus 91 ~~~~ 94 (125)
T cd02951 91 LDPE 94 (125)
T ss_pred EcCC
Confidence 8987
No 74
>PF13911 AhpC-TSA_2: AhpC/TSA antioxidant enzyme
Probab=98.49 E-value=1.1e-07 Score=70.63 Aligned_cols=55 Identities=25% Similarity=0.423 Sum_probs=51.6
Q ss_pred HHHHHHHhhhCCcEEEEEeCCCHHHHHHHHHHhCCeeeeEEEEcCCCCcccceeece
Q 029880 122 LKESKARFDSAGVKLIAVGVGTPNKAQILAERVGNVFITQVLSLPLEVTPSLFKFHV 178 (186)
Q Consensus 122 L~~l~~ef~~~Gv~vVaIs~d~~e~~~~f~~~~~~~l~fpvL~Dp~~~~~~~f~~~~ 178 (186)
|.+..+++++.||.+|+|+.++.+.+++|++..+ ++|||++||++.+++.+|+..
T Consensus 2 L~~~~~~l~~~gv~lv~I~~g~~~~~~~f~~~~~--~p~~ly~D~~~~lY~~lg~~~ 56 (115)
T PF13911_consen 2 LSRRKPELEAAGVKLVVIGCGSPEGIEKFCELTG--FPFPLYVDPERKLYKALGLKR 56 (115)
T ss_pred hhHhHHHHHHcCCeEEEEEcCCHHHHHHHHhccC--CCCcEEEeCcHHHHHHhCCcc
Confidence 6778899999999999999999988999999999 999999999999999999875
No 75
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=98.46 E-value=5.1e-07 Score=65.64 Aligned_cols=54 Identities=19% Similarity=0.222 Sum_probs=41.7
Q ss_pred CCeEEEEEEcCCCCcchHHHHHHHHHHHHHhhhCC--cEEEEEeCCCHHHHHHHHHHhC
Q 029880 99 EGVAVVALLRHFGCPCCWELASALKESKARFDSAG--VKLIAVGVGTPNKAQILAERVG 155 (186)
Q Consensus 99 ~g~vvLvffr~~wCp~C~~el~~L~~l~~ef~~~G--v~vVaIs~d~~e~~~~f~~~~~ 155 (186)
++.++|+.||++||++|+...|.|.++..+++..| +.+..++.+... .++++++
T Consensus 14 ~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~---~~~~~~~ 69 (104)
T cd03000 14 KEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYS---SIASEFG 69 (104)
T ss_pred cCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCH---hHHhhcC
Confidence 34688999999999999999999999999997654 666777776533 3344555
No 76
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=98.44 E-value=8.2e-07 Score=64.02 Aligned_cols=53 Identities=23% Similarity=0.399 Sum_probs=44.2
Q ss_pred CCeEEEEEEcCCCCcchHHHHHHHHHHHHHhhhCCcEEEEEeCCCHHHHHHHHHHhC
Q 029880 99 EGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKAQILAERVG 155 (186)
Q Consensus 99 ~g~vvLvffr~~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~d~~e~~~~f~~~~~ 155 (186)
+++++++.||+.||+.|+...|.+.++.+++++. +.+..|+.+... .++++++
T Consensus 17 ~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~-~~~~~vd~~~~~---~~~~~~~ 69 (101)
T cd03003 17 SGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGV-IRIGAVNCGDDR---MLCRSQG 69 (101)
T ss_pred CCCeEEEEEECCCChHHHHhHHHHHHHHHHhcCc-eEEEEEeCCccH---HHHHHcC
Confidence 4578999999999999999999999999998754 888999998643 3455666
No 77
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=98.43 E-value=7.7e-07 Score=70.30 Aligned_cols=54 Identities=17% Similarity=0.285 Sum_probs=45.8
Q ss_pred CCeEEEEEEcCCCCcchHHHHHHHHHHHHHhhhCCcEEEEEeCCCHHHHHHHHHHhC
Q 029880 99 EGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKAQILAERVG 155 (186)
Q Consensus 99 ~g~vvLvffr~~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~d~~e~~~~f~~~~~ 155 (186)
+++++|+.||++||++|+...|.+.++.+++.+.++.++.|+.+.... .+++++
T Consensus 46 ~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~~---la~~~~ 99 (152)
T cd02962 46 KRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPN---VAEKFR 99 (152)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCHH---HHHHcC
Confidence 357899999999999999999999999999987789999999987543 344555
No 78
>PRK09381 trxA thioredoxin; Provisional
Probab=98.42 E-value=5.7e-07 Score=65.64 Aligned_cols=46 Identities=13% Similarity=0.189 Sum_probs=40.3
Q ss_pred CeEEEEEEcCCCCcchHHHHHHHHHHHHHhhhCCcEEEEEeCCCHHH
Q 029880 100 GVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNK 146 (186)
Q Consensus 100 g~vvLvffr~~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~d~~e~ 146 (186)
++.+|+.||+.|||.|+...|.|.++.+++.+ ++.++.|+.+....
T Consensus 21 ~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~-~~~~~~vd~~~~~~ 66 (109)
T PRK09381 21 DGAILVDFWAEWCGPCKMIAPILDEIADEYQG-KLTVAKLNIDQNPG 66 (109)
T ss_pred CCeEEEEEECCCCHHHHHHhHHHHHHHHHhCC-CcEEEEEECCCChh
Confidence 56789999999999999999999999999976 48999999987544
No 79
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=98.41 E-value=7.6e-07 Score=64.01 Aligned_cols=68 Identities=19% Similarity=0.262 Sum_probs=49.6
Q ss_pred CCeEEEEEEcCCCCcchHHHHHHHHHHHHHhhhCCcEEEEEeCCCHHHHHHHHHHhC-CeeeeEEEEcCCCCc
Q 029880 99 EGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKAQILAERVG-NVFITQVLSLPLEVT 170 (186)
Q Consensus 99 ~g~vvLvffr~~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~d~~e~~~~f~~~~~-~~l~fpvL~Dp~~~~ 170 (186)
.+++++++||+.||+.|+...+.+.++.+++.+ ++.++.|+.+....+ +++++ ..+|.-++.+.....
T Consensus 12 ~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~-~v~~~~id~d~~~~l---~~~~~v~~vPt~~i~~~g~~v 80 (97)
T cd02949 12 SDRLILVLYTSPTCGPCRTLKPILNKVIDEFDG-AVHFVEIDIDEDQEI---AEAAGIMGTPTVQFFKDKELV 80 (97)
T ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHHHHhCC-ceEEEEEECCCCHHH---HHHCCCeeccEEEEEECCeEE
Confidence 468999999999999999999999999988864 588888998765432 33443 115555566544333
No 80
>PRK10996 thioredoxin 2; Provisional
Probab=98.38 E-value=3.1e-07 Score=70.94 Aligned_cols=71 Identities=17% Similarity=0.243 Sum_probs=50.5
Q ss_pred ecccccccCCCeEEEEEEcCCCCcchHHHHHHHHHHHHHhhhCCcEEEEEeCCCHHHHHHHHHHhC-CeeeeEEEEcC
Q 029880 90 LFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKAQILAERVG-NVFITQVLSLP 166 (186)
Q Consensus 90 sLsdl~~~~~g~vvLvffr~~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~d~~e~~~~f~~~~~-~~l~fpvL~Dp 166 (186)
.+.++.+ .++.++++||+.||+.|+...+.|.++..++.+ ++.++.|+.+.... ++++++ ..+|.-++.+.
T Consensus 44 ~~~~~i~--~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~-~v~~~~vd~~~~~~---l~~~~~V~~~Ptlii~~~ 115 (139)
T PRK10996 44 TLDKLLQ--DDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSG-KVRFVKVNTEAERE---LSARFRIRSIPTIMIFKN 115 (139)
T ss_pred HHHHHHh--CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCC-CeEEEEEeCCCCHH---HHHhcCCCccCEEEEEEC
Confidence 4444543 468999999999999999999999999988765 58888898876544 344554 11444344443
No 81
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=98.38 E-value=1e-06 Score=62.90 Aligned_cols=44 Identities=18% Similarity=0.252 Sum_probs=38.5
Q ss_pred EEEEEEcCCCCcchHHHHHHHHHHHHHhhh--CCcEEEEEeCCCHH
Q 029880 102 AVVALLRHFGCPCCWELASALKESKARFDS--AGVKLIAVGVGTPN 145 (186)
Q Consensus 102 vvLvffr~~wCp~C~~el~~L~~l~~ef~~--~Gv~vVaIs~d~~e 145 (186)
.+++.||+.||+.|+...|.+.+++.++++ .++.++.|+.+...
T Consensus 18 ~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~ 63 (102)
T cd03005 18 NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHR 63 (102)
T ss_pred CEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCCh
Confidence 388889999999999999999999999976 46888999887654
No 82
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=98.37 E-value=2.3e-06 Score=70.71 Aligned_cols=83 Identities=24% Similarity=0.344 Sum_probs=69.0
Q ss_pred CeEEECCCCCEEecccccccCCCeEEEEEEcCCCCc-chHHHHHHHHHHHHHhh---hCCcEEEEEeCC----CHHHHHH
Q 029880 78 DFSIFTAAGEPVLFKDLWDQNEGVAVVALLRHFGCP-CCWELASALKESKARFD---SAGVKLIAVGVG----TPNKAQI 149 (186)
Q Consensus 78 df~L~d~~G~~vsLsdl~~~~~g~vvLvffr~~wCp-~C~~el~~L~~l~~ef~---~~Gv~vVaIs~d----~~e~~~~ 149 (186)
+|+|.|.+|+.+.+.++ +|++.|++|-.+.|| .|-..+..|.++.+++. ..++++|.|+.| +++.+++
T Consensus 49 ~f~l~d~~G~~~~~~~l----~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDtp~~lk~ 124 (207)
T COG1999 49 DFELTDQDGKPFTLKDL----KGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDTPEVLKK 124 (207)
T ss_pred ceeeecCCCCEeecccc----CCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCCCHHHHHH
Confidence 79999999999999999 578888888899999 69999999999999987 556788999887 4678999
Q ss_pred HHHHhCCeeeeEEEEc
Q 029880 150 LAERVGNVFITQVLSL 165 (186)
Q Consensus 150 f~~~~~~~l~fpvL~D 165 (186)
|.+ ++++-.|.-+..
T Consensus 125 Y~~-~~~~~~~~~ltg 139 (207)
T COG1999 125 YAE-LNFDPRWIGLTG 139 (207)
T ss_pred Hhc-ccCCCCeeeeeC
Confidence 999 332245655654
No 83
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=98.37 E-value=2.1e-06 Score=62.00 Aligned_cols=65 Identities=15% Similarity=0.120 Sum_probs=47.6
Q ss_pred CCeEEEEEEcCCCCcchHHHHHHHHHHHHHhhhCCcEEEEEeCCCHHHHHHHHHHhC-CeeeeEEEEcCC
Q 029880 99 EGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKAQILAERVG-NVFITQVLSLPL 167 (186)
Q Consensus 99 ~g~vvLvffr~~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~d~~e~~~~f~~~~~-~~l~fpvL~Dp~ 167 (186)
.++++|+.||+.||+.|+...|.+.++.+++.. ++.+..|+.+.... ++++++ ..+|--++.+.+
T Consensus 18 ~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~-~~~~~~vd~~~~~~---~~~~~~i~~~Pt~~~~~~g 83 (104)
T cd03004 18 RKEPWLVDFYAPWCGPCQALLPELRKAARALKG-KVKVGSVDCQKYES---LCQQANIRAYPTIRLYPGN 83 (104)
T ss_pred CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcC-CcEEEEEECCchHH---HHHHcCCCcccEEEEEcCC
Confidence 346889999999999999999999999999853 58889999887543 445555 013333445544
No 84
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=98.36 E-value=1.4e-06 Score=63.22 Aligned_cols=68 Identities=18% Similarity=0.212 Sum_probs=49.8
Q ss_pred CCeEEEEEEcCCCCcchHHHHHHHHHHHHHhhhCCcEEEEEeCCCHHHHHHHHHHhC-CeeeeEEEEcCCC
Q 029880 99 EGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKAQILAERVG-NVFITQVLSLPLE 168 (186)
Q Consensus 99 ~g~vvLvffr~~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~d~~e~~~~f~~~~~-~~l~fpvL~Dp~~ 168 (186)
.++.+|+.||+.||+.|+...+.+.++.+++.. .+.++.|+.+..+ ...++++++ ..+|.-++.++++
T Consensus 17 ~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~-~~~~~~v~~~~~~-~~~~~~~~~i~~~Pt~~~~~~~~ 85 (109)
T cd03002 17 TNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDG-LVQVAAVDCDEDK-NKPLCGKYGVQGFPTLKVFRPPK 85 (109)
T ss_pred CCCeEEEEEECCCCHHHHhhChHHHHHHHHhcC-CceEEEEecCccc-cHHHHHHcCCCcCCEEEEEeCCC
Confidence 457789999999999999999999999998864 5888999988632 234555665 1134445566665
No 85
>PTZ00051 thioredoxin; Provisional
Probab=98.35 E-value=1.6e-06 Score=61.80 Aligned_cols=52 Identities=17% Similarity=0.239 Sum_probs=41.6
Q ss_pred CCeEEEEEEcCCCCcchHHHHHHHHHHHHHhhhCCcEEEEEeCCCHHHHHHHHHHhC
Q 029880 99 EGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKAQILAERVG 155 (186)
Q Consensus 99 ~g~vvLvffr~~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~d~~e~~~~f~~~~~ 155 (186)
.++.++++||+.||+.|+...+.|.++..++. ++.++.|+.+... .++++++
T Consensus 17 ~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~--~~~~~~vd~~~~~---~~~~~~~ 68 (98)
T PTZ00051 17 QNELVIVDFYAEWCGPCKRIAPFYEECSKEYT--KMVFVKVDVDELS---EVAEKEN 68 (98)
T ss_pred cCCeEEEEEECCCCHHHHHHhHHHHHHHHHcC--CcEEEEEECcchH---HHHHHCC
Confidence 45889999999999999999999999988764 5888888887543 4455555
No 86
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=98.35 E-value=1.1e-06 Score=66.04 Aligned_cols=72 Identities=15% Similarity=0.189 Sum_probs=49.2
Q ss_pred CCeEEEEEEcCCCCcchHHHHHHHHHHHHHhhhCCcEEEEEeCCCH--HHHHHHHHHhCCeeeeEEEEcCCCCccc
Q 029880 99 EGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTP--NKAQILAERVGNVFITQVLSLPLEVTPS 172 (186)
Q Consensus 99 ~g~vvLvffr~~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~d~~--e~~~~f~~~~~~~l~fpvL~Dp~~~~~~ 172 (186)
+++.||+.|++.||++|+...+.+.+...... .+..++.|..+.. .....|.... +.+|.-++.|+++....
T Consensus 18 ~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~-~~~~fv~v~vd~~~~~~~~~~~~~g-~~vPt~~f~~~~Gk~~~ 91 (117)
T cd02959 18 SGKPLMLLIHKTWCGACKALKPKFAESKEISE-LSHNFVMVNLEDDEEPKDEEFSPDG-GYIPRILFLDPSGDVHP 91 (117)
T ss_pred cCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHh-hcCcEEEEEecCCCCchhhhcccCC-CccceEEEECCCCCCch
Confidence 46889999999999999999999998755443 3445666666543 2233343222 12788889998876654
No 87
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=98.32 E-value=1.6e-06 Score=61.53 Aligned_cols=52 Identities=10% Similarity=0.086 Sum_probs=41.1
Q ss_pred CeEEEEEEcCCCCcchHHHHHHHHHHHHHhhhCCcEEEEEeCCCHHHHHHHHHHhC
Q 029880 100 GVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKAQILAERVG 155 (186)
Q Consensus 100 g~vvLvffr~~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~d~~e~~~~f~~~~~ 155 (186)
++.++++||+.||+.|+...+.|.++.+++ ..++.++.|..+... .++++++
T Consensus 14 ~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~-~~~i~~~~vd~~~~~---~~~~~~~ 65 (97)
T cd02984 14 SKLLVLHFWAPWAEPCKQMNQVFEELAKEA-FPSVLFLSIEAEELP---EISEKFE 65 (97)
T ss_pred CCEEEEEEECCCCHHHHHHhHHHHHHHHHh-CCceEEEEEccccCH---HHHHhcC
Confidence 488999999999999999999999999887 457888888776433 3444555
No 88
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=98.31 E-value=1.6e-06 Score=65.50 Aligned_cols=53 Identities=13% Similarity=0.140 Sum_probs=42.8
Q ss_pred CCeEEEEEEcCCCCcchHHHHHHHHHHHHHhhhCCcEEEEEeCCCHHHHHHHHHHhC
Q 029880 99 EGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKAQILAERVG 155 (186)
Q Consensus 99 ~g~vvLvffr~~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~d~~e~~~~f~~~~~ 155 (186)
.++++|+.||++||++|+.-.|.|.++..++.+. +.++-|+.|.... .+++++
T Consensus 13 ~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~-v~f~kVDvD~~~~---la~~~~ 65 (114)
T cd02954 13 EEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNF-AVIYLVDIDEVPD---FNKMYE 65 (114)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHccCc-eEEEEEECCCCHH---HHHHcC
Confidence 3578999999999999999999999999988643 6788899987543 444555
No 89
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=98.30 E-value=1.8e-06 Score=61.71 Aligned_cols=68 Identities=13% Similarity=0.142 Sum_probs=48.7
Q ss_pred CCeEEEEEEcCCCCcchHHHHHHHHHHHHHhhh-CCcEEEEEeCCCHHHHHHHHHHhCCee-eeEE-EEcCCCC
Q 029880 99 EGVAVVALLRHFGCPCCWELASALKESKARFDS-AGVKLIAVGVGTPNKAQILAERVGNVF-ITQV-LSLPLEV 169 (186)
Q Consensus 99 ~g~vvLvffr~~wCp~C~~el~~L~~l~~ef~~-~Gv~vVaIs~d~~e~~~~f~~~~~~~l-~fpv-L~Dp~~~ 169 (186)
+++.+++.||+.||+.|+...+.+.++.+.+.+ .++.++.|..+.. ....++++++ + .+|. +..+++.
T Consensus 16 ~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-~~~~~~~~~~--i~~~Pt~~~~~~g~ 86 (104)
T cd02997 16 KEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKP-EHDALKEEYN--VKGFPTFKYFENGK 86 (104)
T ss_pred hCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCC-ccHHHHHhCC--CccccEEEEEeCCC
Confidence 456889999999999999999999999999875 3466777777652 2334556666 5 4553 3444554
No 90
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=98.30 E-value=2.1e-06 Score=61.63 Aligned_cols=53 Identities=25% Similarity=0.304 Sum_probs=42.9
Q ss_pred CCeEEEEEEcCCCCcchHHHHHHHHHHHHHhhhCCcEEEEEeCCCHHHHHHHHHHhC
Q 029880 99 EGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKAQILAERVG 155 (186)
Q Consensus 99 ~g~vvLvffr~~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~d~~e~~~~f~~~~~ 155 (186)
+++ +|+.||+.||++|+...|.+.++..+++..++.+..|+.++... ++++++
T Consensus 16 ~~~-~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~---~~~~~~ 68 (101)
T cd02994 16 EGE-WMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEPG---LSGRFF 68 (101)
T ss_pred CCC-EEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCHh---HHHHcC
Confidence 345 57999999999999999999999998877789999998876443 345555
No 91
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=98.28 E-value=2.3e-06 Score=61.00 Aligned_cols=67 Identities=21% Similarity=0.185 Sum_probs=48.3
Q ss_pred CeEEEEEEcCCCCcchHHHHHHHHHHHHHhhh-CCcEEEEEeCCCHHHHHHHHHHhC-CeeeeEEEEcCCC
Q 029880 100 GVAVVALLRHFGCPCCWELASALKESKARFDS-AGVKLIAVGVGTPNKAQILAERVG-NVFITQVLSLPLE 168 (186)
Q Consensus 100 g~vvLvffr~~wCp~C~~el~~L~~l~~ef~~-~Gv~vVaIs~d~~e~~~~f~~~~~-~~l~fpvL~Dp~~ 168 (186)
++.+++.||+.||+.|++..+.+.++..+++. .++.++.|+.+.. ...++++++ ..+|.-++.++++
T Consensus 18 ~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~--~~~~~~~~~i~~~P~~~~~~~~~ 86 (105)
T cd02998 18 KKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEA--NKDLAKKYGVSGFPTLKFFPKGS 86 (105)
T ss_pred CCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCc--chhhHHhCCCCCcCEEEEEeCCC
Confidence 46789999999999999999999999999873 4688888887772 234445554 1144445556554
No 92
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=98.26 E-value=2.3e-06 Score=63.72 Aligned_cols=52 Identities=17% Similarity=0.252 Sum_probs=47.2
Q ss_pred CCeEEEEEEcCCCCcchHHHHHHHHHHHHHhhhCCcEEEEEeCCCHHHHHHHHHHhC
Q 029880 99 EGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKAQILAERVG 155 (186)
Q Consensus 99 ~g~vvLvffr~~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~d~~e~~~~f~~~~~ 155 (186)
+++.+|+.|.++||++|+.-.|.+.++..++.+ +.++-|+.|. ...++++++
T Consensus 20 ~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~--v~Flkvdvde---~~~~~~~~~ 71 (106)
T KOG0907|consen 20 GDKLVVVDFYATWCGPCKAIAPKFEKLAEKYPD--VVFLKVDVDE---LEEVAKEFN 71 (106)
T ss_pred CCCeEEEEEECCCCcchhhhhhHHHHHHHHCCC--CEEEEEeccc---CHhHHHhcC
Confidence 458899999999999999999999999999987 8999999998 777888887
No 93
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=98.26 E-value=2.9e-06 Score=60.17 Aligned_cols=66 Identities=17% Similarity=0.133 Sum_probs=49.2
Q ss_pred CCeEEEEEEcCCCCcchHHHHHHHHHHHHHhhhCC-cEEEEEeCCCHHHHHHHHHHhCCeee-eE--EEEcCCCC
Q 029880 99 EGVAVVALLRHFGCPCCWELASALKESKARFDSAG-VKLIAVGVGTPNKAQILAERVGNVFI-TQ--VLSLPLEV 169 (186)
Q Consensus 99 ~g~vvLvffr~~wCp~C~~el~~L~~l~~ef~~~G-v~vVaIs~d~~e~~~~f~~~~~~~l~-fp--vL~Dp~~~ 169 (186)
+++++++.||++||+.|+...+.+.++...++..+ +.++.|..+.. ..++++++ +. +| ++.++++.
T Consensus 12 ~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~~~~~~--i~~~P~~~~~~~~~~ 81 (102)
T TIGR01126 12 SNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAE---KDLASRFG--VSGFPTIKFFPKGKK 81 (102)
T ss_pred cCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccch---HHHHHhCC--CCcCCEEEEecCCCc
Confidence 46889999999999999999999999999998764 77777776654 34445666 42 34 34666654
No 94
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=98.25 E-value=3.5e-06 Score=63.32 Aligned_cols=47 Identities=6% Similarity=0.045 Sum_probs=40.9
Q ss_pred CCeEEEEEEcCCCCcchHHHHHHHHHHHHHhhhCCcEEEEEeCCCHHH
Q 029880 99 EGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNK 146 (186)
Q Consensus 99 ~g~vvLvffr~~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~d~~e~ 146 (186)
+++.+|+.||++||++|+...|.+.++.+++++. +.++.|+.+....
T Consensus 28 ~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~-v~~~~Vd~d~~~~ 74 (113)
T cd03006 28 DAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQ-VLFVAINCWWPQG 74 (113)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCC-eEEEEEECCCChH
Confidence 4688999999999999999999999999999754 8889999886543
No 95
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=98.24 E-value=4.8e-06 Score=59.49 Aligned_cols=65 Identities=22% Similarity=0.142 Sum_probs=46.7
Q ss_pred CCeEEEEEEcCCCCcchHHHHHHHHHHHHHhhhCCcEEEEEeCCCHHHHHHHHHHhC-CeeeeEEEEcCC
Q 029880 99 EGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKAQILAERVG-NVFITQVLSLPL 167 (186)
Q Consensus 99 ~g~vvLvffr~~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~d~~e~~~~f~~~~~-~~l~fpvL~Dp~ 167 (186)
.++.+|+.||+.||+.|+...+.+.++..++.. .+.++.|+.+.... ++++++ ..+|.-++.+.+
T Consensus 17 ~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~-~~~~~~id~~~~~~---~~~~~~i~~~P~~~~~~~~ 82 (103)
T cd03001 17 SDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKG-IVKVGAVDADVHQS---LAQQYGVRGFPTIKVFGAG 82 (103)
T ss_pred CCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcC-CceEEEEECcchHH---HHHHCCCCccCEEEEECCC
Confidence 356788888999999999999999999988864 48888888876543 344555 013433455554
No 96
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=98.21 E-value=5.6e-06 Score=59.02 Aligned_cols=47 Identities=15% Similarity=0.207 Sum_probs=40.7
Q ss_pred CCeEEEEEEcCCCCcchHHHHHHHHHHHHHhhh-CCcEEEEEeCCCHH
Q 029880 99 EGVAVVALLRHFGCPCCWELASALKESKARFDS-AGVKLIAVGVGTPN 145 (186)
Q Consensus 99 ~g~vvLvffr~~wCp~C~~el~~L~~l~~ef~~-~Gv~vVaIs~d~~e 145 (186)
.++.++++||+.||+.|+...+.+.++.+++++ ..+.+..|+.+..+
T Consensus 17 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~ 64 (104)
T cd02995 17 SDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAND 64 (104)
T ss_pred CCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcchh
Confidence 357888999999999999999999999999877 56888888887654
No 97
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=98.20 E-value=6e-06 Score=61.60 Aligned_cols=55 Identities=18% Similarity=0.199 Sum_probs=42.3
Q ss_pred CeEEEEEEcCCCCcchHHHHHHHHHHHHHhhhC-C-cEEEEEeCCCHHHHHHHHHHhC
Q 029880 100 GVAVVALLRHFGCPCCWELASALKESKARFDSA-G-VKLIAVGVGTPNKAQILAERVG 155 (186)
Q Consensus 100 g~vvLvffr~~wCp~C~~el~~L~~l~~ef~~~-G-v~vVaIs~d~~e~~~~f~~~~~ 155 (186)
++.+++.||+.||++|+...+.+.++..++++. + +.+..|+.+.. ....++++++
T Consensus 19 ~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~-~~~~~~~~~~ 75 (114)
T cd02992 19 PSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADE-ENVALCRDFG 75 (114)
T ss_pred CCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccch-hhHHHHHhCC
Confidence 478999999999999999999999999998753 3 66766765432 2345666666
No 98
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=98.19 E-value=6.8e-06 Score=59.97 Aligned_cols=54 Identities=17% Similarity=0.119 Sum_probs=42.8
Q ss_pred CCeEEEEEEcCCCCcchHHHHHHHHHHHHHhhhC-----CcEEEEEeCCCHHHHHHHHHHhC
Q 029880 99 EGVAVVALLRHFGCPCCWELASALKESKARFDSA-----GVKLIAVGVGTPNKAQILAERVG 155 (186)
Q Consensus 99 ~g~vvLvffr~~wCp~C~~el~~L~~l~~ef~~~-----Gv~vVaIs~d~~e~~~~f~~~~~ 155 (186)
.++.+|++||+.||+.|+...|.+.++.+++++. .+.+..|+.+... ..+++++
T Consensus 17 ~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~---~l~~~~~ 75 (108)
T cd02996 17 SAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKES---DIADRYR 75 (108)
T ss_pred cCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCH---HHHHhCC
Confidence 4578999999999999999999999999887542 3777888888643 3456666
No 99
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=98.16 E-value=5.8e-06 Score=58.29 Aligned_cols=52 Identities=21% Similarity=0.334 Sum_probs=41.9
Q ss_pred CeEEEEEEcCCCCcchHHHHHHHHHHHHHhhhCCcEEEEEeCCCHHHHHHHHHHhC
Q 029880 100 GVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKAQILAERVG 155 (186)
Q Consensus 100 g~vvLvffr~~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~d~~e~~~~f~~~~~ 155 (186)
++.++++||+.||+.|+...+.|.++.+++. .++.++.|..+.... ++++++
T Consensus 14 ~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~-~~~~~~~vd~~~~~~---~~~~~~ 65 (101)
T TIGR01068 14 DKPVLVDFWAPWCGPCKMIAPILEELAKEYE-GKVKFVKLNVDENPD---IAAKYG 65 (101)
T ss_pred CCcEEEEEECCCCHHHHHhCHHHHHHHHHhc-CCeEEEEEECCCCHH---HHHHcC
Confidence 4688899999999999999999999998875 358999999886543 344555
No 100
>PHA02278 thioredoxin-like protein
Probab=98.12 E-value=6.3e-06 Score=60.88 Aligned_cols=56 Identities=11% Similarity=0.171 Sum_probs=41.3
Q ss_pred CCeEEEEEEcCCCCcchHHHHHHHHHHHHHhhhCCcEEEEEeCCCHH-HHHHHHHHhC
Q 029880 99 EGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPN-KAQILAERVG 155 (186)
Q Consensus 99 ~g~vvLvffr~~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~d~~e-~~~~f~~~~~ 155 (186)
.++.+|+.||+.||++|+...|.|.++.+++.. .+.++-|+.|..+ ...+.+++++
T Consensus 13 ~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~-~~~~~~vdvd~~~~d~~~l~~~~~ 69 (103)
T PHA02278 13 QKKDVIVMITQDNCGKCEILKSVIPMFQESGDI-KKPILTLNLDAEDVDREKAVKLFD 69 (103)
T ss_pred CCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcC-CceEEEEECCccccccHHHHHHCC
Confidence 468899999999999999999999999876432 3678888888531 1223455555
No 101
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=98.11 E-value=6.7e-06 Score=56.09 Aligned_cols=64 Identities=25% Similarity=0.232 Sum_probs=46.2
Q ss_pred CeEEEEEEcCCCCcchHHHHHHHHHHHHHhhhCCcEEEEEeCCCHHHHHHHHHHhC-CeeeeEEEEcCCC
Q 029880 100 GVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKAQILAERVG-NVFITQVLSLPLE 168 (186)
Q Consensus 100 g~vvLvffr~~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~d~~e~~~~f~~~~~-~~l~fpvL~Dp~~ 168 (186)
++.+|++|++.||+.|+...+.|.++..+ ..++.++.|+.+.... ++++++ ..+|.-++.+.++
T Consensus 10 ~~~~ll~~~~~~C~~C~~~~~~~~~~~~~--~~~~~~~~i~~~~~~~---~~~~~~v~~~P~~~~~~~g~ 74 (93)
T cd02947 10 AKPVVVDFWAPWCGPCKAIAPVLEELAEE--YPKVKFVKVDVDENPE---LAEEYGVRSIPTFLFFKNGK 74 (93)
T ss_pred CCcEEEEEECCCChhHHHhhHHHHHHHHH--CCCceEEEEECCCChh---HHHhcCcccccEEEEEECCE
Confidence 37788999999999999999999999877 6789999999887332 334444 0134434454444
No 102
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=98.11 E-value=8.2e-06 Score=57.81 Aligned_cols=52 Identities=21% Similarity=0.357 Sum_probs=44.8
Q ss_pred CeEEEEEEcCCCCcchHHHHHHHHHHHHHhhhCCcEEEEEeCCCHHHHHHHHHHhC
Q 029880 100 GVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKAQILAERVG 155 (186)
Q Consensus 100 g~vvLvffr~~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~d~~e~~~~f~~~~~ 155 (186)
++.+|+.|++.||+.|+...|.|.++.+++.+ ++.++-|+.+.. +.++++++
T Consensus 17 ~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~-~v~~~~vd~~~~---~~l~~~~~ 68 (103)
T PF00085_consen 17 DKPVVVYFYAPWCPPCKAFKPILEKLAKEYKD-NVKFAKVDCDEN---KELCKKYG 68 (103)
T ss_dssp SSEEEEEEESTTSHHHHHHHHHHHHHHHHTTT-TSEEEEEETTTS---HHHHHHTT
T ss_pred CCCEEEEEeCCCCCccccccceeccccccccc-ccccchhhhhcc---chhhhccC
Confidence 57888888899999999999999999999988 999999999855 44556666
No 103
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=98.10 E-value=1.2e-05 Score=59.47 Aligned_cols=50 Identities=26% Similarity=0.412 Sum_probs=41.8
Q ss_pred CeEEEEEEcCCCCcchHHHHHHHHHHHHHhhhCCcEEEEEeCCCHHHHHHHHHHhC
Q 029880 100 GVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKAQILAERVG 155 (186)
Q Consensus 100 g~vvLvffr~~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~d~~e~~~~f~~~~~ 155 (186)
++.+|+.||+.||+.|+...+.|.++.+++. ++.++-|+.+.. .++++++
T Consensus 24 ~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~--~v~f~~vd~~~~----~l~~~~~ 73 (113)
T cd02957 24 GTRVVVHFYEPGFPRCKILDSHLEELAAKYP--ETKFVKINAEKA----FLVNYLD 73 (113)
T ss_pred CCEEEEEEeCCCCCcHHHHHHHHHHHHHHCC--CcEEEEEEchhh----HHHHhcC
Confidence 3788899999999999999999999999885 578888887754 5667776
No 104
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=98.09 E-value=1.4e-05 Score=55.75 Aligned_cols=66 Identities=17% Similarity=0.130 Sum_probs=49.2
Q ss_pred CCeEEEEEEcCCCCcchHHHHHHHHHHHHHhh-hCCcEEEEEeCCCHHHHHHHHHHhC-CeeeeEEEEcCC
Q 029880 99 EGVAVVALLRHFGCPCCWELASALKESKARFD-SAGVKLIAVGVGTPNKAQILAERVG-NVFITQVLSLPL 167 (186)
Q Consensus 99 ~g~vvLvffr~~wCp~C~~el~~L~~l~~ef~-~~Gv~vVaIs~d~~e~~~~f~~~~~-~~l~fpvL~Dp~ 167 (186)
+++.+|+.||+.||+.|+...+.+.++...++ ..++.++.|+.+. ...++++++ ..+|--++.+++
T Consensus 14 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~---~~~~~~~~~i~~~Pt~~~~~~~ 81 (101)
T cd02961 14 DSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTA---NNDLCSEYGVRGYPTIKLFPNG 81 (101)
T ss_pred CCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccc---hHHHHHhCCCCCCCEEEEEcCC
Confidence 34589999999999999999999999998886 6678888888876 334455666 113434456666
No 105
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=98.09 E-value=1.1e-05 Score=60.91 Aligned_cols=53 Identities=11% Similarity=0.164 Sum_probs=43.8
Q ss_pred CCeEEEEEEcCCCCcchHHHHHHHHHHHHHhhhCCcEEEEEeCCCHHHHHHHHHHhC
Q 029880 99 EGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKAQILAERVG 155 (186)
Q Consensus 99 ~g~vvLvffr~~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~d~~e~~~~f~~~~~ 155 (186)
++++||+.|+++||++|+..-|.|.++.+++.+. +.+.-|..|... .++++++
T Consensus 13 ~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~-~~f~kVDVDev~---dva~~y~ 65 (114)
T cd02986 13 AEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKM-ASIYLVDVDKVP---VYTQYFD 65 (114)
T ss_pred CCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCc-eEEEEEeccccH---HHHHhcC
Confidence 4689999999999999999999999999998543 888888888644 4555666
No 106
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=98.09 E-value=6.3e-06 Score=62.66 Aligned_cols=67 Identities=16% Similarity=0.157 Sum_probs=48.5
Q ss_pred CCeEEEEEEcC-------CCCcchHHHHHHHHHHHHHhhhCCcEEEEEeCCCHH----HHHHHHHHhCCe--eeeEEEEc
Q 029880 99 EGVAVVALLRH-------FGCPCCWELASALKESKARFDSAGVKLIAVGVGTPN----KAQILAERVGNV--FITQVLSL 165 (186)
Q Consensus 99 ~g~vvLvffr~-------~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~d~~e----~~~~f~~~~~~~--l~fpvL~D 165 (186)
+|+.+++.|+| +|||+|+...|.|.++.+++. .++.++-|..|... ....++.+++.. +|.=++.+
T Consensus 20 ~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~-~~v~fv~Vdvd~~~~w~d~~~~~~~~~~I~~~iPT~~~~~ 98 (119)
T cd02952 20 EGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAP-EDCVFIYCDVGDRPYWRDPNNPFRTDPKLTTGVPTLLRWK 98 (119)
T ss_pred CCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCC-CCCEEEEEEcCCcccccCcchhhHhccCcccCCCEEEEEc
Confidence 35788888899 999999999999999999886 35899999998643 234555554411 54444444
Q ss_pred C
Q 029880 166 P 166 (186)
Q Consensus 166 p 166 (186)
.
T Consensus 99 ~ 99 (119)
T cd02952 99 T 99 (119)
T ss_pred C
Confidence 3
No 107
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=98.06 E-value=9.7e-06 Score=61.49 Aligned_cols=54 Identities=15% Similarity=0.311 Sum_probs=44.3
Q ss_pred CCeEEEEEEcCCCCcchHHHHHHHHHHHHHhhhCCcEEEEEeCCCH--------HHHHHHHHHhC
Q 029880 99 EGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTP--------NKAQILAERVG 155 (186)
Q Consensus 99 ~g~vvLvffr~~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~d~~--------e~~~~f~~~~~ 155 (186)
.+..++++|+++|||+|+.-.|.|.++.++ .++.+.-|+.+.. +.+.+|.++++
T Consensus 22 ~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~---~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~ 83 (122)
T TIGR01295 22 KKETATFFIGRKTCPYCRKFSGTLSGVVAQ---TKAPIYYIDSENNGSFEMSSLNDLTAFRSRFG 83 (122)
T ss_pred cCCcEEEEEECCCChhHHHHhHHHHHHHHh---cCCcEEEEECCCccCcCcccHHHHHHHHHHcC
Confidence 467889999999999999999999999887 4577888888732 25778888876
No 108
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.01 E-value=1.9e-05 Score=54.91 Aligned_cols=42 Identities=29% Similarity=0.434 Sum_probs=37.4
Q ss_pred CeEEEEEEcCCCCcchHHHHHHHHHHHHHhhhCCcEEEEEeCC
Q 029880 100 GVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVG 142 (186)
Q Consensus 100 g~vvLvffr~~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~d 142 (186)
++++++.||+.|||.|+..++.|.++.+++.. ++.++.|...
T Consensus 32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~i~~~ 73 (127)
T COG0526 32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGG-DVEVVAVNVD 73 (127)
T ss_pred CceEEEEEEcCcCHHHHhhchhHHHHHHHhcC-CcEEEEEECC
Confidence 56777777899999999999999999999887 7889999986
No 109
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=97.98 E-value=2.1e-05 Score=61.63 Aligned_cols=53 Identities=13% Similarity=0.073 Sum_probs=43.0
Q ss_pred CCeEEEEEEcCCCCcchHHHHHHHHHHHHHhhhCCcEEEEEeCCCHHHHHHHHHHhC
Q 029880 99 EGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKAQILAERVG 155 (186)
Q Consensus 99 ~g~vvLvffr~~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~d~~e~~~~f~~~~~ 155 (186)
+.++||+.|+++||++|+...|.|.++.+++.+. +.++-|+.|... .++++++
T Consensus 22 ~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~-~~~~kVDVDe~~---dla~~y~ 74 (142)
T PLN00410 22 EERLVVIRFGHDWDETCMQMDEVLASVAETIKNF-AVIYLVDITEVP---DFNTMYE 74 (142)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCc-eEEEEEECCCCH---HHHHHcC
Confidence 4578999999999999999999999999987544 677888888644 4555666
No 110
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.98 E-value=1.1e-05 Score=63.54 Aligned_cols=52 Identities=25% Similarity=0.263 Sum_probs=42.4
Q ss_pred CeEEEEEEcCCCCcchHHHHHHHHHHHHHhhhCCcEEEEEeCCCHHHHHHHHHHhC
Q 029880 100 GVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKAQILAERVG 155 (186)
Q Consensus 100 g~vvLvffr~~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~d~~e~~~~f~~~~~ 155 (186)
+..|||.|||.||++|+...|.|+++..++ ..-+++.-|+.|+.- +++++++
T Consensus 61 ~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~-~g~~k~~kvdtD~~~---ela~~Y~ 112 (150)
T KOG0910|consen 61 DVPVLVDFHAEWCGPCKMLGPILEELVSEY-AGKFKLYKVDTDEHP---ELAEDYE 112 (150)
T ss_pred CCCEEEEEecCcCccHhHhhHHHHHHHHhh-cCeEEEEEEcccccc---chHhhcc
Confidence 578899999999999999999999999999 344888888888643 2344666
No 111
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=97.97 E-value=5.4e-05 Score=64.48 Aligned_cols=69 Identities=20% Similarity=0.351 Sum_probs=55.9
Q ss_pred CCCCCCCCcCCeEEECCCCCEEecccccccCCCeEEEEEEcCCCCc-chHHHHHHHHHHHHHhhhC-CcE--EEEEeCCC
Q 029880 68 FPANVGDLLGDFSIFTAAGEPVLFKDLWDQNEGVAVVALLRHFGCP-CCWELASALKESKARFDSA-GVK--LIAVGVGT 143 (186)
Q Consensus 68 ~~l~~G~~aPdf~L~d~~G~~vsLsdl~~~~~g~vvLvffr~~wCp-~C~~el~~L~~l~~ef~~~-Gv~--vVaIs~d~ 143 (186)
....+| -.|+|.|.+|+.+.-.|| .|+.+|+.|=.++|| .|=+|+..|.+..+++++. |+. =|.|++|+
T Consensus 114 gk~~iG---GpF~L~d~~Gk~~te~df----~Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDP 186 (280)
T KOG2792|consen 114 GKPAIG---GPFSLVDHDGKRVTEKDF----LGKWSLIYFGFTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVDP 186 (280)
T ss_pred CCCccC---CceEEEecCCCeeccccc----ccceEEEEecccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeCc
Confidence 344555 469999999999999999 578888888899999 7999999999999999765 433 25666653
No 112
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=97.96 E-value=3.9e-05 Score=57.16 Aligned_cols=63 Identities=21% Similarity=0.204 Sum_probs=45.3
Q ss_pred CCeEEEEEEcCCCCcchHHHHHHHHHHHHHhhhCCcEEEEEeCCCHHHHHHHHHHhC-CeeeeEEEEcC
Q 029880 99 EGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKAQILAERVG-NVFITQVLSLP 166 (186)
Q Consensus 99 ~g~vvLvffr~~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~d~~e~~~~f~~~~~-~~l~fpvL~Dp 166 (186)
.+..++++|++.||++|+...+.|.++.+++ ..+.++-|+.+... +.+++++ ..+|.-++.+.
T Consensus 21 ~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~--~~i~~~~vd~d~~~---~l~~~~~v~~vPt~~i~~~ 84 (113)
T cd02975 21 NPVDLVVFSSKEGCQYCEVTKQLLEELSELS--DKLKLEIYDFDEDK---EKAEKYGVERVPTTIFLQD 84 (113)
T ss_pred CCeEEEEEeCCCCCCChHHHHHHHHHHHHhc--CceEEEEEeCCcCH---HHHHHcCCCcCCEEEEEeC
Confidence 3456888899999999999999999998775 45888888888643 4445555 11455555554
No 113
>COG4312 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.88 E-value=8e-05 Score=62.13 Aligned_cols=96 Identities=22% Similarity=0.281 Sum_probs=78.1
Q ss_pred CCeEEECCCCCEEecccccccCCCeEEEEEE-----cCCCCcchHHHHHHHHHHHHHhhhCCcEEEEEeCCCHHHHHHHH
Q 029880 77 GDFSIFTAAGEPVLFKDLWDQNEGVAVVALL-----RHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKAQILA 151 (186)
Q Consensus 77 Pdf~L~d~~G~~vsLsdl~~~~~g~vvLvff-----r~~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~d~~e~~~~f~ 151 (186)
-+..+.+.+| +.+|.||.+. +...+|+-| |...||.|.-.+..+.-...-++..+|.+++|+-.+.+.+..|.
T Consensus 53 K~Y~Fe~~~G-~~sLadLF~g-rsqLIvYhfmF~P~~~~~C~gCS~laD~~dGa~~HL~~~dv~lv~VsRAPl~~l~~~k 130 (247)
T COG4312 53 KDYVFETENG-KKSLADLFGG-RSQLIVYHFMFGPGWDHGCPGCSFLADHWDGAVAHLEHHDVTLVAVSRAPLEELVAYK 130 (247)
T ss_pred ceeEeecCCc-chhHHHHhCC-CceEEEEEEecCCCccCCCCchhhHHhhhhhhhhhHhhcCceEEEEecCcHHHHHHHH
Confidence 4556666666 7899999852 223444433 34589999999999999999999999999999999999999999
Q ss_pred HHhCCeeeeEEEEcCCCCcccceee
Q 029880 152 ERVGNVFITQVLSLPLEVTPSLFKF 176 (186)
Q Consensus 152 ~~~~~~l~fpvL~Dp~~~~~~~f~~ 176 (186)
++.| +.||.+++.+..+-.-|.+
T Consensus 131 ~rmG--W~f~w~Ss~~s~Fn~Df~v 153 (247)
T COG4312 131 RRMG--WQFPWVSSTDSDFNRDFQV 153 (247)
T ss_pred HhcC--CcceeEeccCccccccccc
Confidence 9999 9999999988877776643
No 114
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=97.88 E-value=5.2e-05 Score=55.14 Aligned_cols=72 Identities=24% Similarity=0.306 Sum_probs=47.8
Q ss_pred CCeEEEEEEcCCCCcchHHHHHHHHHHHH--HhhhCCcEEEEEeCCCHHH-----------------HHHHHHHhC-Cee
Q 029880 99 EGVAVVALLRHFGCPCCWELASALKESKA--RFDSAGVKLIAVGVGTPNK-----------------AQILAERVG-NVF 158 (186)
Q Consensus 99 ~g~vvLvffr~~wCp~C~~el~~L~~l~~--ef~~~Gv~vVaIs~d~~e~-----------------~~~f~~~~~-~~l 158 (186)
+|+.+|++|+..|||+|++..+.+.+..+ ..-..++.++.++.+.... ..++++.++ ...
T Consensus 4 ~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~gt 83 (112)
T PF13098_consen 4 NGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGVNGT 83 (112)
T ss_dssp TSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--SS
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCCCcc
Confidence 56788888899999999988888776433 2223368899999886542 245777777 113
Q ss_pred eeEEEEcCCCCc
Q 029880 159 ITQVLSLPLEVT 170 (186)
Q Consensus 159 ~fpvL~Dp~~~~ 170 (186)
|.-++.|.++..
T Consensus 84 Pt~~~~d~~G~~ 95 (112)
T PF13098_consen 84 PTIVFLDKDGKI 95 (112)
T ss_dssp SEEEECTTTSCE
T ss_pred CEEEEEcCCCCE
Confidence 556678877753
No 115
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=97.86 E-value=4.6e-05 Score=70.04 Aligned_cols=46 Identities=20% Similarity=0.312 Sum_probs=42.0
Q ss_pred CCeEEEEEEcCCCCcchHHHHHHHHHHHHHhhhCCcEEEEEeCCCH
Q 029880 99 EGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTP 144 (186)
Q Consensus 99 ~g~vvLvffr~~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~d~~ 144 (186)
.++++||.||+.||++|+...|.|.++.+++++.|+.++.|+.|..
T Consensus 370 ~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~ 415 (463)
T TIGR00424 370 RKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGD 415 (463)
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCC
Confidence 4688999999999999999999999999999888899999998864
No 116
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=97.82 E-value=5.7e-05 Score=56.29 Aligned_cols=66 Identities=20% Similarity=0.133 Sum_probs=46.7
Q ss_pred CeEEEEEEcCCCCcchHHHHHHHHHHHHHhhhCCcEEEEEeCCCHHHHHHHHHHhC-CeeeeEEEEcCCCCc
Q 029880 100 GVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKAQILAERVG-NVFITQVLSLPLEVT 170 (186)
Q Consensus 100 g~vvLvffr~~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~d~~e~~~~f~~~~~-~~l~fpvL~Dp~~~~ 170 (186)
+..+|+.||+.||+.|+...+.|.++.+++. ++.++-|+.+.... .+++++ ..+|--++......+
T Consensus 22 ~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~--~i~f~~Vd~~~~~~---l~~~~~v~~vPt~l~fk~G~~v 88 (113)
T cd02989 22 SERVVCHFYHPEFFRCKIMDKHLEILAKKHL--ETKFIKVNAEKAPF---LVEKLNIKVLPTVILFKNGKTV 88 (113)
T ss_pred CCcEEEEEECCCCccHHHHHHHHHHHHHHcC--CCEEEEEEcccCHH---HHHHCCCccCCEEEEEECCEEE
Confidence 4678889999999999999999999998874 58899999887543 334444 013433444433333
No 117
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=97.82 E-value=4.2e-05 Score=64.08 Aligned_cols=52 Identities=15% Similarity=0.171 Sum_probs=40.4
Q ss_pred CeEEEEEEcCCCCcchHHHHHHHHHHHHHhhhCCcEEEEEeCCCHHHHHHHHHHhC
Q 029880 100 GVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKAQILAERVG 155 (186)
Q Consensus 100 g~vvLvffr~~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~d~~e~~~~f~~~~~ 155 (186)
+..+++.||+.||++|+...|.+.++.+++++ .+.+..|..+.. ...+++++
T Consensus 52 ~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~-~v~~~~VD~~~~---~~l~~~~~ 103 (224)
T PTZ00443 52 TGPWFVKFYAPWCSHCRKMAPAWERLAKALKG-QVNVADLDATRA---LNLAKRFA 103 (224)
T ss_pred CCCEEEEEECCCChHHHHHHHHHHHHHHHcCC-CeEEEEecCccc---HHHHHHcC
Confidence 36778999999999999999999999999875 366666766643 34556666
No 118
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=97.76 E-value=4.7e-05 Score=64.17 Aligned_cols=104 Identities=13% Similarity=0.091 Sum_probs=76.8
Q ss_pred cCCCCCCCCcCCeEEECCCCCE-EecccccccCCCeEEEEEEcCCCCcchHHHHHHHHHHHHHhhhCCcEEEEEeCC---
Q 029880 67 EFPANVGDLLGDFSIFTAAGEP-VLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVG--- 142 (186)
Q Consensus 67 ~~~l~~G~~aPdf~L~d~~G~~-vsLsdl~~~~~g~vvLvffr~~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~d--- 142 (186)
.....+|..|||..+.+.+|+. .++.|+.+ ++..+|++|-.-.||+=+..+..++++..+|.+. ++++.|...
T Consensus 70 ~~~a~~G~~APns~vv~l~g~~~~~ildf~~--g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~-adFl~VYI~EAH 146 (237)
T PF00837_consen 70 FKEAKLGGPAPNSPVVTLDGQRSCRILDFAK--GNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDV-ADFLIVYIEEAH 146 (237)
T ss_pred ccceeCCCCCCCCceEeeCCCcceeHHHhcc--CCCCeEEEcccccchHHHHHHHHHHHHHHHhhhh-hheehhhHhhhC
Confidence 3446789999999999999999 99999975 6688889998889999999999999999999863 344444331
Q ss_pred ------------------CH-HH--HHHHHHHhCCeeeeEEEEcC-CCCccccee
Q 029880 143 ------------------TP-NK--AQILAERVGNVFITQVLSLP-LEVTPSLFK 175 (186)
Q Consensus 143 ------------------~~-e~--~~~f~~~~~~~l~fpvL~Dp-~~~~~~~f~ 175 (186)
+. |+ +.+...+.. ..+|++.|. ++.+...||
T Consensus 147 psDgW~~~~~~~~i~qh~sledR~~aA~~l~~~~--~~~pi~vD~mdN~~~~~Yg 199 (237)
T PF00837_consen 147 PSDGWAFGNNPYEIPQHRSLEDRLRAAKLLKEEF--PQCPIVVDTMDNNFNKAYG 199 (237)
T ss_pred cCCCccCCCCceeecCCCCHHHHHHHHHHHHhhC--CCCCEEEEccCCHHHHHhC
Confidence 11 22 233333444 578999996 555555554
No 119
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=97.74 E-value=0.00018 Score=44.42 Aligned_cols=50 Identities=30% Similarity=0.382 Sum_probs=40.4
Q ss_pred EEEEcCCCCcchHHHHHHHHHHHHHhhhCCcEEEEEeCCCHHHHHHHHHHhC
Q 029880 104 VALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKAQILAERVG 155 (186)
Q Consensus 104 Lvffr~~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~d~~e~~~~f~~~~~ 155 (186)
|++|++.||+.|.+..+.+.++ +....++.++.++.+.......+...++
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 50 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAEL--ALLNKGVKFEAVDVDEDPALEKELKRYG 50 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHH--HhhCCCcEEEEEEcCCChHHhhHHHhCC
Confidence 4678899999999999999998 6777899999999998766555433343
No 120
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=97.73 E-value=9.1e-05 Score=69.64 Aligned_cols=71 Identities=14% Similarity=0.076 Sum_probs=51.7
Q ss_pred CCeEEEEEEcCCCCcchHHHHHHH---HHHHHHhhhCCcEEEEEeCCC-HHHHHHHHHHhC-CeeeeEEEEcCCCCcc
Q 029880 99 EGVAVVALLRHFGCPCCWELASAL---KESKARFDSAGVKLIAVGVGT-PNKAQILAERVG-NVFITQVLSLPLEVTP 171 (186)
Q Consensus 99 ~g~vvLvffr~~wCp~C~~el~~L---~~l~~ef~~~Gv~vVaIs~d~-~e~~~~f~~~~~-~~l~fpvL~Dp~~~~~ 171 (186)
+|++|++.||+.||+.|+...+.. .++.++++ ++.++-|+.++ .++.++++++++ ..+|.-++.|+++...
T Consensus 473 ~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~--~~~~v~vDvt~~~~~~~~l~~~~~v~g~Pt~~~~~~~G~~i 548 (571)
T PRK00293 473 KGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALA--DTVLLQADVTANNAEDVALLKHYNVLGLPTILFFDAQGQEI 548 (571)
T ss_pred cCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhc--CCEEEEEECCCCChhhHHHHHHcCCCCCCEEEEECCCCCCc
Confidence 468899999999999999876654 45666664 58888888765 345667777776 2256777889887653
No 121
>PTZ00102 disulphide isomerase; Provisional
Probab=97.72 E-value=5.5e-05 Score=68.30 Aligned_cols=70 Identities=13% Similarity=0.089 Sum_probs=48.5
Q ss_pred CCeEEEEEEcCCCCcchHHHHHHHHHHHHHhhhCC-cEEEEEeCCCHHHHHHHHHHhCCeeeeEEEEcCCCCc
Q 029880 99 EGVAVVALLRHFGCPCCWELASALKESKARFDSAG-VKLIAVGVGTPNKAQILAERVGNVFITQVLSLPLEVT 170 (186)
Q Consensus 99 ~g~vvLvffr~~wCp~C~~el~~L~~l~~ef~~~G-v~vVaIs~d~~e~~~~f~~~~~~~l~fpvL~Dp~~~~ 170 (186)
.++.+|+.||+.||+.|+...|.+.++..++++.+ +.+..|+.+..+....-..-.+ +|--++.+.++..
T Consensus 374 ~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~~~~~~~~~v~~--~Pt~~~~~~~~~~ 444 (477)
T PTZ00102 374 SDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTANETPLEEFSWSA--FPTILFVKAGERT 444 (477)
T ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCCccchhcCCCcc--cCeEEEEECCCcc
Confidence 46889999999999999999999999999887654 6666677765433211111234 4544566665543
No 122
>PLN02309 5'-adenylylsulfate reductase
Probab=97.71 E-value=0.00011 Score=67.52 Aligned_cols=44 Identities=18% Similarity=0.348 Sum_probs=41.1
Q ss_pred CCeEEEEEEcCCCCcchHHHHHHHHHHHHHhhhCCcEEEEEeCC
Q 029880 99 EGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVG 142 (186)
Q Consensus 99 ~g~vvLvffr~~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~d 142 (186)
.++++||.|++.||++|+...+.+.++..++...++.++.|+.+
T Consensus 364 ~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d 407 (457)
T PLN02309 364 RKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRAD 407 (457)
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECC
Confidence 46889999999999999999999999999998889999999988
No 123
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.69 E-value=0.0001 Score=64.03 Aligned_cols=48 Identities=21% Similarity=0.266 Sum_probs=40.1
Q ss_pred CeEEEEEEcCCCCcchHHHHHHHHHHHHHhhhCCcEEEEEeCCCHHHHH
Q 029880 100 GVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKAQ 148 (186)
Q Consensus 100 g~vvLvffr~~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~d~~e~~~ 148 (186)
...|||.||+.||++|+..+|.|.++..+++.+ +.++-|++|....+.
T Consensus 43 ~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~-f~LakvN~D~~p~vA 90 (304)
T COG3118 43 EVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGK-FKLAKVNCDAEPMVA 90 (304)
T ss_pred CCCeEEEecCCCCchHHHHHHHHHHHHHHhCCc-eEEEEecCCcchhHH
Confidence 468999999999999999999999999988654 677778888755443
No 124
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=97.68 E-value=0.00013 Score=50.05 Aligned_cols=56 Identities=16% Similarity=0.283 Sum_probs=41.2
Q ss_pred EEEEEcCCCCcchHHHHHHHHHHHHHhhhCCcEEEEEeCCCHHHHHHHHHHhCCeee-eEEEE
Q 029880 103 VVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKAQILAERVGNVFI-TQVLS 164 (186)
Q Consensus 103 vLvffr~~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~d~~e~~~~f~~~~~~~l~-fpvL~ 164 (186)
.|..||+.||++|....+.|.++..++.. .+.++-|+.+.... .+++++ +. .|.+.
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~-~~~~~~vd~~~~~~---~~~~~~--v~~vPt~~ 58 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGD-AVEVEYINVMENPQ---KAMEYG--IMAVPAIV 58 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcC-ceEEEEEeCccCHH---HHHHcC--CccCCEEE
Confidence 47788999999999999999999988864 38888888865433 234555 43 44443
No 125
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=97.65 E-value=0.00037 Score=48.63 Aligned_cols=65 Identities=20% Similarity=0.242 Sum_probs=45.9
Q ss_pred CCeEEEEEEcCCCCcchHHHHHHHHH--HHHHhhhCCcEEEEEeCCCHHHHHHHHHHhCCeeeeEEEEcC
Q 029880 99 EGVAVVALLRHFGCPCCWELASALKE--SKARFDSAGVKLIAVGVGTPNKAQILAERVGNVFITQVLSLP 166 (186)
Q Consensus 99 ~g~vvLvffr~~wCp~C~~el~~L~~--l~~ef~~~Gv~vVaIs~d~~e~~~~f~~~~~~~l~fpvL~Dp 166 (186)
+++.|+|.|.+.||+.|+..-..+-. ...++-..++..|-|..++.+...++.. .+ +|.-++.||
T Consensus 16 ~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~~~~~~~~-~~--~P~~~~ldp 82 (82)
T PF13899_consen 16 EGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDEDPNAQFDR-QG--YPTFFFLDP 82 (82)
T ss_dssp HTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHHHHHHHHH-CS--SSEEEEEET
T ss_pred cCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCChhHHhCC-cc--CCEEEEeCC
Confidence 46788888899999999998877732 2333334778888888887765443333 67 777777775
No 126
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=97.63 E-value=0.00013 Score=64.98 Aligned_cols=54 Identities=22% Similarity=0.302 Sum_probs=45.2
Q ss_pred CCeEEEEEEcCCCCcchHHHHHHHHHHHHHhhhCC--cEEEEEeCCCHHHHHHHHHHhC
Q 029880 99 EGVAVVALLRHFGCPCCWELASALKESKARFDSAG--VKLIAVGVGTPNKAQILAERVG 155 (186)
Q Consensus 99 ~g~vvLvffr~~wCp~C~~el~~L~~l~~ef~~~G--v~vVaIs~d~~e~~~~f~~~~~ 155 (186)
++++++++||+.||+.|+...+.+.++.+.+++.+ +.++.|..+... +.+++++
T Consensus 17 ~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~---~l~~~~~ 72 (462)
T TIGR01130 17 SHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEK---DLAQKYG 72 (462)
T ss_pred cCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcH---HHHHhCC
Confidence 45788999999999999999999999999998776 888888887653 4556666
No 127
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=97.57 E-value=0.00023 Score=50.89 Aligned_cols=52 Identities=19% Similarity=0.205 Sum_probs=41.5
Q ss_pred CeEEEEEEcCCCCcchHHHHHHHHHHHHHhhhCCcEEEEEeCCCHHHHHHHHHHhC
Q 029880 100 GVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKAQILAERVG 155 (186)
Q Consensus 100 g~vvLvffr~~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~d~~e~~~~f~~~~~ 155 (186)
+..++++|++.||+.|....+.|.++.++++++ +.++-|+.+.- ..+++.++
T Consensus 12 ~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~-v~f~~vd~~~~---~~~~~~~~ 63 (103)
T cd02982 12 GKPLLVLFYNKDDSESEELRERFKEVAKKFKGK-LLFVVVDADDF---GRHLEYFG 63 (103)
T ss_pred CCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCe-EEEEEEchHhh---HHHHHHcC
Confidence 467788888999999999999999999999854 77777777663 33556666
No 128
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=97.52 E-value=0.00024 Score=54.03 Aligned_cols=54 Identities=13% Similarity=0.128 Sum_probs=40.4
Q ss_pred CCeEEEEEEcCCCCcc--hH--HHHHHHHHHHHH-hhhCCcEEEEEeCCCHHHHHHHHHHhC
Q 029880 99 EGVAVVALLRHFGCPC--CW--ELASALKESKAR-FDSAGVKLIAVGVGTPNKAQILAERVG 155 (186)
Q Consensus 99 ~g~vvLvffr~~wCp~--C~--~el~~L~~l~~e-f~~~Gv~vVaIs~d~~e~~~~f~~~~~ 155 (186)
...++|++||+.||++ |+ ...|.|.++..+ +++.++.++-|+.+... +.+++++
T Consensus 26 ~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~---~La~~~~ 84 (120)
T cd03065 26 YDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDA---KVAKKLG 84 (120)
T ss_pred CCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCH---HHHHHcC
Confidence 3579999999999998 99 556666666655 45678999999998653 3444555
No 129
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=97.49 E-value=0.0005 Score=52.49 Aligned_cols=71 Identities=17% Similarity=0.173 Sum_probs=45.9
Q ss_pred CCeEEEEEEcCCCCcchHHHHHH-HH--HHHHHhhhCCcEEEEEeCCCH-HHHHHH---HH----HhCCeeeeEEEEcCC
Q 029880 99 EGVAVVALLRHFGCPCCWELASA-LK--ESKARFDSAGVKLIAVGVGTP-NKAQIL---AE----RVGNVFITQVLSLPL 167 (186)
Q Consensus 99 ~g~vvLvffr~~wCp~C~~el~~-L~--~l~~ef~~~Gv~vVaIs~d~~-e~~~~f---~~----~~~~~l~fpvL~Dp~ 167 (186)
+++.|+++|.+.||+.|+..-.. +. ++.+.+ .+++.+|-|..+.. +..+.+ +. ..| +|+-++.|++
T Consensus 14 ~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l-~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G--~Pt~vfl~~~ 90 (124)
T cd02955 14 EDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAIL-NENFVPIKVDREERPDVDKIYMNAAQAMTGQGG--WPLNVFLTPD 90 (124)
T ss_pred cCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHH-hCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCC--CCEEEEECCC
Confidence 46788888999999999977652 22 333333 34666777776542 222223 22 236 8999999999
Q ss_pred CCccc
Q 029880 168 EVTPS 172 (186)
Q Consensus 168 ~~~~~ 172 (186)
+....
T Consensus 91 G~~~~ 95 (124)
T cd02955 91 LKPFF 95 (124)
T ss_pred CCEEe
Confidence 86544
No 130
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=97.49 E-value=0.00025 Score=53.37 Aligned_cols=53 Identities=28% Similarity=0.319 Sum_probs=41.9
Q ss_pred CCeEEEEEEcCCC--CcchHHHHHHHHHHHHHhhhCCcEEEEEeCCCHHHHHHHHHHhC
Q 029880 99 EGVAVVALLRHFG--CPCCWELASALKESKARFDSAGVKLIAVGVGTPNKAQILAERVG 155 (186)
Q Consensus 99 ~g~vvLvffr~~w--Cp~C~~el~~L~~l~~ef~~~Gv~vVaIs~d~~e~~~~f~~~~~ 155 (186)
.+..+|++|++.| ||.|+...|.|.++.+++.+. +.++-|+.++.. +.+++++
T Consensus 26 ~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~-v~f~kVdid~~~---~la~~f~ 80 (111)
T cd02965 26 AGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGR-FRAAVVGRADEQ---ALAARFG 80 (111)
T ss_pred CCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCc-EEEEEEECCCCH---HHHHHcC
Confidence 4567788888997 999999999999999998754 677788888755 4445555
No 131
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=97.43 E-value=0.00033 Score=56.33 Aligned_cols=49 Identities=22% Similarity=0.290 Sum_probs=40.9
Q ss_pred eEEEEEEcCCCCcchHHHHHHHHHHHHHhhhCCcEEEEEeCCCHHHHHHHHHHhC
Q 029880 101 VAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKAQILAERVG 155 (186)
Q Consensus 101 ~vvLvffr~~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~d~~e~~~~f~~~~~ 155 (186)
..|||.||+.||++|+...+.|.++..++. ++.++-|+.+.. ..+++++
T Consensus 84 ~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~--~vkF~kVd~d~~----~l~~~f~ 132 (175)
T cd02987 84 TTVVVHIYEPGIPGCAALNSSLLCLAAEYP--AVKFCKIRASAT----GASDEFD 132 (175)
T ss_pred cEEEEEEECCCCchHHHHHHHHHHHHHHCC--CeEEEEEeccch----hhHHhCC
Confidence 489999999999999999999999998874 588999988864 4455555
No 132
>PTZ00102 disulphide isomerase; Provisional
Probab=97.36 E-value=0.00049 Score=62.15 Aligned_cols=54 Identities=22% Similarity=0.261 Sum_probs=42.5
Q ss_pred CCeEEEEEEcCCCCcchHHHHHHHHHHHHHhhhCC--cEEEEEeCCCHHHHHHHHHHhC
Q 029880 99 EGVAVVALLRHFGCPCCWELASALKESKARFDSAG--VKLIAVGVGTPNKAQILAERVG 155 (186)
Q Consensus 99 ~g~vvLvffr~~wCp~C~~el~~L~~l~~ef~~~G--v~vVaIs~d~~e~~~~f~~~~~ 155 (186)
+++.+++.||+.||+.|++..|.+.++...+++.+ +.+.-|..+... ..+++++
T Consensus 48 ~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~---~l~~~~~ 103 (477)
T PTZ00102 48 ENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEM---ELAQEFG 103 (477)
T ss_pred cCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCH---HHHHhcC
Confidence 46789999999999999999999999998887654 667777766533 3455666
No 133
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=97.29 E-value=0.0011 Score=44.58 Aligned_cols=54 Identities=15% Similarity=0.196 Sum_probs=34.8
Q ss_pred EEEEcCCCCcchHHHHHHHHHHHHHhhhCCcEEEEEeCCCHHHHHHHH-HHh-CCeeeeEEEEc
Q 029880 104 VALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKAQILA-ERV-GNVFITQVLSL 165 (186)
Q Consensus 104 Lvffr~~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~d~~e~~~~f~-~~~-~~~l~fpvL~D 165 (186)
+..|++.|||+|++..+.|.+ .|+.+-.|+.+..+...++. +.. + ....|++..
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~-------~~~~~~~idi~~~~~~~~~~~~~~~~-~~~vP~i~~ 57 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDK-------LGAAYEWVDIEEDEGAADRVVSVNNG-NMTVPTVKF 57 (77)
T ss_pred EEEEECCCChhHHHHHHHHHH-------cCCceEEEeCcCCHhHHHHHHHHhCC-CceeCEEEE
Confidence 567889999999997776654 46666667776554444443 332 3 245677753
No 134
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=97.27 E-value=0.0017 Score=42.79 Aligned_cols=54 Identities=19% Similarity=0.266 Sum_probs=40.7
Q ss_pred EEEEcCCCCcchHHHHHHHHHHHHHhhhCCcEEEEEeCCCH-HHHHHHHHHhCCee-eeEEEEcC
Q 029880 104 VALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTP-NKAQILAERVGNVF-ITQVLSLP 166 (186)
Q Consensus 104 Lvffr~~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~d~~-e~~~~f~~~~~~~l-~fpvL~Dp 166 (186)
|.+|++.|||+|+...+.|. +.|+.+.-++.++. +..+++.+.++ . ..|++.+.
T Consensus 2 i~lf~~~~C~~C~~~~~~l~-------~~~i~~~~vdi~~~~~~~~~~~~~~~--~~~vP~~~~~ 57 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLT-------SKGIAFEEIDVEKDSAAREEVLKVLG--QRGVPVIVIG 57 (74)
T ss_pred EEEEcCCCChhHHHHHHHHH-------HCCCeEEEEeccCCHHHHHHHHHHhC--CCcccEEEEC
Confidence 56789999999998776654 36888888888754 44667777777 5 47888764
No 135
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=97.24 E-value=0.00091 Score=44.40 Aligned_cols=54 Identities=15% Similarity=0.233 Sum_probs=39.0
Q ss_pred EEEEcCCCCcchHHHHHHHHHHHHHhhhCCcEEEEEeCCCHHHHHHHHHHhCCee-eeEEEE
Q 029880 104 VALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKAQILAERVGNVF-ITQVLS 164 (186)
Q Consensus 104 Lvffr~~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~d~~e~~~~f~~~~~~~l-~fpvL~ 164 (186)
|..|++.|||+|.+-.+.|.++..+ ..++.+.-|..++.. +.+++++ + ..|.+.
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~l~~~--~~~i~~~~id~~~~~---~l~~~~~--i~~vPti~ 57 (67)
T cd02973 3 IEVFVSPTCPYCPDAVQAANRIAAL--NPNISAEMIDAAEFP---DLADEYG--VMSVPAIV 57 (67)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHh--CCceEEEEEEcccCH---hHHHHcC--CcccCEEE
Confidence 6778899999999999988888654 346888888877543 3455676 5 355554
No 136
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=97.11 E-value=0.0014 Score=45.28 Aligned_cols=41 Identities=15% Similarity=0.180 Sum_probs=30.3
Q ss_pred EEEcCCCCcchHHHHHHHHHHHHHhhhCCcEEEEEeCCCHHHHH
Q 029880 105 ALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKAQ 148 (186)
Q Consensus 105 vffr~~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~d~~e~~~ 148 (186)
+.|++.|||.|..-.+.+.++.+++. +.+-.+..++.+.+.
T Consensus 3 i~~~a~~C~~C~~~~~~~~~~~~e~~---~~~~~~~v~~~~~a~ 43 (76)
T TIGR00412 3 IQIYGTGCANCQMTEKNVKKAVEELG---IDAEFEKVTDMNEIL 43 (76)
T ss_pred EEEECCCCcCHHHHHHHHHHHHHHcC---CCeEEEEeCCHHHHH
Confidence 56779999999999999999998764 334445555555543
No 137
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=97.10 E-value=0.001 Score=59.24 Aligned_cols=47 Identities=19% Similarity=0.268 Sum_probs=40.9
Q ss_pred CCeEEEEEEcCCCCcchHHHHHHHHHHHHHhhhC--CcEEEEEeCCCHH
Q 029880 99 EGVAVVALLRHFGCPCCWELASALKESKARFDSA--GVKLIAVGVGTPN 145 (186)
Q Consensus 99 ~g~vvLvffr~~wCp~C~~el~~L~~l~~ef~~~--Gv~vVaIs~d~~e 145 (186)
.++.+|+.||+.||+.|....|.+.++.++++.. ++.++.|+.+..+
T Consensus 363 ~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n~ 411 (462)
T TIGR01130 363 ETKDVLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATAND 411 (462)
T ss_pred CCCeEEEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCCc
Confidence 4688899999999999999999999999999873 7888889887543
No 138
>PHA02125 thioredoxin-like protein
Probab=96.98 E-value=0.0027 Score=43.63 Aligned_cols=50 Identities=14% Similarity=0.136 Sum_probs=35.0
Q ss_pred EEEEcCCCCcchHHHHHHHHHHHHHhhhCCcEEEEEeCCCHHHHHHHHHHhCCee-eeEEEEc
Q 029880 104 VALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKAQILAERVGNVF-ITQVLSL 165 (186)
Q Consensus 104 Lvffr~~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~d~~e~~~~f~~~~~~~l-~fpvL~D 165 (186)
|+.|++.||++|+.-.+.|.++. +.++-|+.+.. .+.+++++ + .+|.+.+
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~-------~~~~~vd~~~~---~~l~~~~~--v~~~PT~~~ 52 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVE-------YTYVDVDTDEG---VELTAKHH--IRSLPTLVN 52 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHh-------heEEeeeCCCC---HHHHHHcC--CceeCeEEC
Confidence 67889999999999988886542 34555665542 35566777 5 4777774
No 139
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=96.88 E-value=0.00094 Score=61.79 Aligned_cols=63 Identities=16% Similarity=0.162 Sum_probs=49.0
Q ss_pred CCeEEEEEEcCCCCcchHHHHHHHHHHHHHhhhCCcEEEEEeCCCHHHHHHHHHHhCCeee-eEEEE
Q 029880 99 EGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKAQILAERVGNVFI-TQVLS 164 (186)
Q Consensus 99 ~g~vvLvffr~~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~d~~e~~~~f~~~~~~~l~-fpvL~ 164 (186)
+...++|-|.|.||+.|.+.+|++.+....+.+.|=.+...-+|..+. ..++.+++ ++ ||.|.
T Consensus 41 ~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~-~~~~~~y~--v~gyPTlk 104 (493)
T KOG0190|consen 41 GHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEE-SDLASKYE--VRGYPTLK 104 (493)
T ss_pred cCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchh-hhhHhhhc--CCCCCeEE
Confidence 457888999999999999999999999999999854443334444434 78888888 74 87774
No 140
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=96.86 E-value=0.0023 Score=52.29 Aligned_cols=42 Identities=26% Similarity=0.317 Sum_probs=36.6
Q ss_pred CeEEEEEEcCCCCcchHHHHHHHHHHHHHhhhCCcEEEEEeCCC
Q 029880 100 GVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGT 143 (186)
Q Consensus 100 g~vvLvffr~~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~d~ 143 (186)
+..|||.||+.||+.|+...+.|.++..++. ++.++-|..+.
T Consensus 102 ~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~--~vkFvkI~ad~ 143 (192)
T cd02988 102 DTWVVVHLYKDGIPLCRLLNQHLSELARKFP--DTKFVKIISTQ 143 (192)
T ss_pred CCEEEEEEECCCCchHHHHHHHHHHHHHHCC--CCEEEEEEhHH
Confidence 3588999999999999999999999999884 58888888764
No 141
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=96.83 E-value=0.0039 Score=51.25 Aligned_cols=52 Identities=13% Similarity=0.105 Sum_probs=36.6
Q ss_pred CCeEEEEEEcCCCCcchHHHHHHHHHHHHHhhhCCcEEEEEeCCCHHHHHHHHHHhC
Q 029880 99 EGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKAQILAERVG 155 (186)
Q Consensus 99 ~g~vvLvffr~~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~d~~e~~~~f~~~~~ 155 (186)
.++++|+.||+.|||+|..-.+.+.++..+. ..+.+.-|..+... +.+++++
T Consensus 132 ~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~--~~i~~~~vD~~~~~---~~~~~~~ 183 (215)
T TIGR02187 132 DEPVRIEVFVTPTCPYCPYAVLMAHKFALAN--DKILGEMIEANENP---DLAEKYG 183 (215)
T ss_pred CCCcEEEEEECCCCCCcHHHHHHHHHHHHhc--CceEEEEEeCCCCH---HHHHHhC
Confidence 4688888899999999998877777766542 34666667766533 3344566
No 142
>PTZ00062 glutaredoxin; Provisional
Probab=96.79 E-value=0.003 Score=52.26 Aligned_cols=40 Identities=13% Similarity=0.131 Sum_probs=34.8
Q ss_pred eEEEEEEcCCCCcchHHHHHHHHHHHHHhhhCCcEEEEEeCC
Q 029880 101 VAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVG 142 (186)
Q Consensus 101 ~vvLvffr~~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~d 142 (186)
..+|++||+.|||.|+...+.|.++.+++. ++.++-|..+
T Consensus 18 g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~--~~~F~~V~~d 57 (204)
T PTZ00062 18 GKLVLYVKSSKEPEYEQLMDVCNALVEDFP--SLEFYVVNLA 57 (204)
T ss_pred CcEEEEEeCCCCcchHHHHHHHHHHHHHCC--CcEEEEEccc
Confidence 567899999999999999999999999884 4888888766
No 143
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=96.75 E-value=0.0037 Score=44.77 Aligned_cols=52 Identities=15% Similarity=0.116 Sum_probs=40.9
Q ss_pred CCeEEEEEEcCCCCcchHHHHHHHHHHHHHhhhCCcEEEEEeCCCHHHHHHHHHHhC
Q 029880 99 EGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKAQILAERVG 155 (186)
Q Consensus 99 ~g~vvLvffr~~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~d~~e~~~~f~~~~~ 155 (186)
++|+-|.+|.+.||++|..-.+.+.++..++. ++.+..|..+.. .+.+++++
T Consensus 11 ~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~--~i~~~~vd~~~~---~e~a~~~~ 62 (89)
T cd03026 11 NGPINFETYVSLSCHNCPDVVQALNLMAVLNP--NIEHEMIDGALF---QDEVEERG 62 (89)
T ss_pred CCCEEEEEEECCCCCCcHHHHHHHHHHHHHCC--CceEEEEEhHhC---HHHHHHcC
Confidence 57999999999999999999888888876653 588888887653 34455777
No 144
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=96.62 E-value=0.0045 Score=50.88 Aligned_cols=52 Identities=25% Similarity=0.336 Sum_probs=34.3
Q ss_pred eEEEEEEcC---CCCcchHHHHHHHHHHHHHhhhCCcEEEEEeCCCHHHHHHHHHHhC
Q 029880 101 VAVVALLRH---FGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKAQILAERVG 155 (186)
Q Consensus 101 ~vvLvffr~---~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~d~~e~~~~f~~~~~ 155 (186)
.+.|+.|.+ .||++|+...|.|.++.+++. ++.+..|..|..+ ..+.+++++
T Consensus 20 ~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~--~~~i~~v~vd~~~-~~~l~~~~~ 74 (215)
T TIGR02187 20 PVEIVVFTDNDKEGCQYCKETEQLLEELSEVSP--KLKLEIYDFDTPE-DKEEAEKYG 74 (215)
T ss_pred CeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCC--CceEEEEecCCcc-cHHHHHHcC
Confidence 333444556 999999999999999988884 4555556665321 234445555
No 145
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.58 E-value=0.0031 Score=53.81 Aligned_cols=41 Identities=22% Similarity=0.378 Sum_probs=33.4
Q ss_pred CCeEEEEEEcCCCCcchHHHHHHHHHHHHHhhhCCcEEEEEeC
Q 029880 99 EGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGV 141 (186)
Q Consensus 99 ~g~vvLvffr~~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~ 141 (186)
+++.|+|.|.+.||++|.+..|.+..+..+| .|..++=|.+
T Consensus 20 g~k~v~Vdfta~wCGPCk~IaP~Fs~lankY--p~aVFlkVdV 60 (288)
T KOG0908|consen 20 GGKLVVVDFTASWCGPCKRIAPIFSDLANKY--PGAVFLKVDV 60 (288)
T ss_pred CceEEEEEEEecccchHHhhhhHHHHhhhhC--cccEEEEEeH
Confidence 5699999999999999999999999998887 3444444433
No 146
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=96.53 E-value=0.0026 Score=48.85 Aligned_cols=70 Identities=7% Similarity=-0.026 Sum_probs=42.5
Q ss_pred CCeEEEEEEcCCCCcchHHHHHHHHHHHHHhhhCCcEEEEEeCCC-HHHHHHHHHHhCCeeeeEEEEcCCCCc
Q 029880 99 EGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGT-PNKAQILAERVGNVFITQVLSLPLEVT 170 (186)
Q Consensus 99 ~g~vvLvffr~~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~d~-~e~~~~f~~~~~~~l~fpvL~Dp~~~~ 170 (186)
.++.-++.+-.+|||.|+..+|.|.++.+.-. ++.+=.|..|. .+.+.+|....+..+|-=++.|.++..
T Consensus 40 ~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p--~i~~~~i~rd~~~el~~~~lt~g~~~IP~~I~~d~~~~~ 110 (129)
T PF14595_consen 40 QKPYNILVITETWCGDCARNVPVLAKIAEANP--NIEVRIILRDENKELMDQYLTNGGRSIPTFIFLDKDGKE 110 (129)
T ss_dssp -S-EEEEEE--TT-HHHHHHHHHHHHHHHH-T--TEEEEEE-HHHHHHHTTTTTT-SS--SSEEEEE-TT--E
T ss_pred CCCcEEEEEECCCchhHHHHHHHHHHHHHhCC--CCeEEEEEecCChhHHHHHHhCCCeecCEEEEEcCCCCE
Confidence 35667777789999999999999999988643 67777777764 455667766444335666677776443
No 147
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=96.51 E-value=0.012 Score=38.66 Aligned_cols=56 Identities=21% Similarity=0.284 Sum_probs=36.9
Q ss_pred EEEEcCCCCcchHHHHHHHHHHHHHhhhCCcEEEEEeCCCH-HHHHHHHHHhCCeeeeEEEEcCC
Q 029880 104 VALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTP-NKAQILAERVGNVFITQVLSLPL 167 (186)
Q Consensus 104 Lvffr~~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~d~~-e~~~~f~~~~~~~l~fpvL~Dp~ 167 (186)
+..|...|||.|.+....|.+ .|+.+..+..+.. +..+.+.+..+ ...+|++.+.+
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~-------~~i~~~~~~i~~~~~~~~~~~~~~~-~~~vP~i~~~~ 58 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDE-------RGIPFEEVDVDEDPEALEELKKLNG-YRSVPVVVIGD 58 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHH-------CCCCeEEEeCCCCHHHHHHHHHHcC-CcccCEEEECC
Confidence 456778999999986555543 5777777777753 33444554433 14688888755
No 148
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=96.49 E-value=0.0048 Score=46.71 Aligned_cols=67 Identities=16% Similarity=0.062 Sum_probs=42.6
Q ss_pred cccccccCCCeEEEEEEcCCCCcchHHHHHHHHHHHHHhhhCC--cEEEEEeCCCH--HHHHHHHHHhCCeee---eEEE
Q 029880 91 FKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAG--VKLIAVGVGTP--NKAQILAERVGNVFI---TQVL 163 (186)
Q Consensus 91 Lsdl~~~~~g~vvLvffr~~wCp~C~~el~~L~~l~~ef~~~G--v~vVaIs~d~~--e~~~~f~~~~~~~l~---fpvL 163 (186)
+.+..+ +.+.+||-|.++| |.|.+ ++...++.+++..+. +.|.-|..++- .+-+.++++++ +. ||.|
T Consensus 11 F~~~v~--~~~~vlV~F~A~~-Pwc~k-~~~~~~LA~e~~~aa~~v~lakVd~~d~~~~~~~~L~~~y~--I~~~gyPTl 84 (116)
T cd03007 11 FYKVIP--KFKYSLVKFDTAY-PYGEK-HEAFTRLAESSASATDDLLVAEVGIKDYGEKLNMELGERYK--LDKESYPVI 84 (116)
T ss_pred HHHHHh--cCCcEEEEEeCCC-CCCCC-hHHHHHHHHHHHhhcCceEEEEEecccccchhhHHHHHHhC--CCcCCCCEE
Confidence 344444 4588999999955 44444 477777777775432 55555666541 13467899999 84 8855
No 149
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=96.23 E-value=0.016 Score=39.62 Aligned_cols=57 Identities=14% Similarity=0.221 Sum_probs=37.9
Q ss_pred EEEEcCCCCcchHHHHHHHHHHHHHhhhCCcEEEEEeCCC-HHHHHHH-HHHhCCee-eeEEEEc
Q 029880 104 VALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGT-PNKAQIL-AERVGNVF-ITQVLSL 165 (186)
Q Consensus 104 Lvffr~~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~d~-~e~~~~f-~~~~~~~l-~fpvL~D 165 (186)
|+.|.+.|||+|.+..+.|.++. +. ..+.++-|+.++ .+.++++ .+..+ . .+|.+.-
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~--i~-~~~~~~~v~~~~~~~~~~~~l~~~~g--~~~vP~v~i 60 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLN--VK-PAYEVVELDQLSNGSEIQDYLEEITG--QRTVPNIFI 60 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcC--CC-CCCEEEEeeCCCChHHHHHHHHHHhC--CCCCCeEEE
Confidence 45677999999999999998875 21 136777777664 3445554 44455 4 5676653
No 150
>smart00594 UAS UAS domain.
Probab=96.13 E-value=0.046 Score=40.97 Aligned_cols=69 Identities=12% Similarity=0.027 Sum_probs=47.2
Q ss_pred CCeEEEEEEcCCCCcchHHHHHHHHH--HHHHhhhCCcEEEEEeCCCHHHHHHHHHHhC-CeeeeEEEEcCCC
Q 029880 99 EGVAVVALLRHFGCPCCWELASALKE--SKARFDSAGVKLIAVGVGTPNKAQILAERVG-NVFITQVLSLPLE 168 (186)
Q Consensus 99 ~g~vvLvffr~~wCp~C~~el~~L~~--l~~ef~~~Gv~vVaIs~d~~e~~~~f~~~~~-~~l~fpvL~Dp~~ 168 (186)
+++.+++++.+.||+.|......+-. ...++-+.++.++.+..++.+. .++++.++ ..+|+-++.|+.+
T Consensus 26 ~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~~fv~~~~dv~~~eg-~~l~~~~~~~~~P~~~~l~~~~ 97 (122)
T smart00594 26 QRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRENFIFWQVDVDTSEG-QRVSQFYKLDSFPYVAIVDPRT 97 (122)
T ss_pred hcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHcCEEEEEecCCChhH-HHHHHhcCcCCCCEEEEEecCC
Confidence 46899999999999999998876422 2233334467677777776654 45666664 1267777788876
No 151
>PF13728 TraF: F plasmid transfer operon protein
Probab=96.03 E-value=0.013 Score=48.61 Aligned_cols=63 Identities=21% Similarity=0.324 Sum_probs=43.5
Q ss_pred eEEEEEEcCCCCcchHHHHHHHHHHHHHhhhCCcEEEEEeCCCH--------HHHHHHHHHhCCee---eeEEEEcCCC
Q 029880 101 VAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTP--------NKAQILAERVGNVF---ITQVLSLPLE 168 (186)
Q Consensus 101 ~vvLvffr~~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~d~~--------e~~~~f~~~~~~~l---~fpvL~Dp~~ 168 (186)
..=|+||....|++|..+.|-|..+.+++ |+.|++||.|.. ..-...++++| + |--+|.+++.
T Consensus 121 ~~gL~~F~~~~C~~C~~~~pil~~~~~~y---g~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~--v~~~Pal~Lv~~~~ 194 (215)
T PF13728_consen 121 KYGLFFFYRSDCPYCQQQAPILQQFADKY---GFSVIPVSLDGRPIPSFPNPRPDPGQAKRLG--VKVTPALFLVNPNT 194 (215)
T ss_pred CeEEEEEEcCCCchhHHHHHHHHHHHHHh---CCEEEEEecCCCCCcCCCCCCCCHHHHHHcC--CCcCCEEEEEECCC
Confidence 34455555669999999999999998876 899999999841 01233445666 4 3345566654
No 152
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=96.03 E-value=0.012 Score=45.37 Aligned_cols=70 Identities=10% Similarity=0.119 Sum_probs=42.1
Q ss_pred CCeEEEEEEcCCCCcchHHHHHHHHH--HHHHhhhCCcEEEEEeCCCHH-HHHHHHHHhCCeeeeEEEEcCCCCccc
Q 029880 99 EGVAVVALLRHFGCPCCWELASALKE--SKARFDSAGVKLIAVGVGTPN-KAQILAERVGNVFITQVLSLPLEVTPS 172 (186)
Q Consensus 99 ~g~vvLvffr~~wCp~C~~el~~L~~--l~~ef~~~Gv~vVaIs~d~~e-~~~~f~~~~~~~l~fpvL~Dp~~~~~~ 172 (186)
.++.|+++|.+.||++|+..-..+-+ -..++-++++.+|-+..+..+ ... ....+ +|.-++.|+++....
T Consensus 22 ~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~~Fv~V~l~~d~td~~~~--~~g~~--vPtivFld~~g~vi~ 94 (130)
T cd02960 22 SNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQEDFIMLNLVHETTDKNLS--PDGQY--VPRIMFVDPSLTVRA 94 (130)
T ss_pred CCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHhCeEEEEEEeccCCCCcC--ccCcc--cCeEEEECCCCCCcc
Confidence 45778888999999999988776532 223333344444444444221 111 12246 888899999875443
No 153
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=95.97 E-value=0.057 Score=39.62 Aligned_cols=69 Identities=9% Similarity=-0.010 Sum_probs=45.0
Q ss_pred CCeEEEEEEcCCCCcchHHHHHH-HH--HHHHHhhhCCcEEEEEeCCCHHHHHHHHHHhC-CeeeeEEEEcC-CCC
Q 029880 99 EGVAVVALLRHFGCPCCWELASA-LK--ESKARFDSAGVKLIAVGVGTPNKAQILAERVG-NVFITQVLSLP-LEV 169 (186)
Q Consensus 99 ~g~vvLvffr~~wCp~C~~el~~-L~--~l~~ef~~~Gv~vVaIs~d~~e~~~~f~~~~~-~~l~fpvL~Dp-~~~ 169 (186)
+++.+++++.+.||+.|...... |. ++.+.+. .+..++.+..++++ ..++++.++ ..+|+-++.|+ ++.
T Consensus 16 ~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~-~~~v~~~~d~~~~e-~~~~~~~~~~~~~P~~~~i~~~~g~ 89 (114)
T cd02958 16 EKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIR-ENFIFWQCDIDSSE-GQRFLQSYKVDKYPHIAIIDPRTGE 89 (114)
T ss_pred hCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHH-hCEEEEEecCCCcc-HHHHHHHhCccCCCeEEEEeCccCc
Confidence 46899999999999999987654 22 2333343 35666666666543 456666664 11567777888 554
No 154
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=95.84 E-value=0.024 Score=36.88 Aligned_cols=54 Identities=26% Similarity=0.399 Sum_probs=38.3
Q ss_pred EEEEcCCCCcchHHHHHHHHHHHHHhhhCCcEEEEEeCCCHHH-HHHHHHHhCCeeeeEEEEc
Q 029880 104 VALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNK-AQILAERVGNVFITQVLSL 165 (186)
Q Consensus 104 Lvffr~~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~d~~e~-~~~f~~~~~~~l~fpvL~D 165 (186)
|+.|...|||.|..-...| ++.|+..-.+..++.+. .+.+.+..| ...+|.+.-
T Consensus 1 V~vy~~~~C~~C~~~~~~L-------~~~~i~y~~~dv~~~~~~~~~l~~~~g-~~~~P~v~i 55 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFL-------DEKGIPYEEVDVDEDEEAREELKELSG-VRTVPQVFI 55 (60)
T ss_dssp EEEEESTTSHHHHHHHHHH-------HHTTBEEEEEEGGGSHHHHHHHHHHHS-SSSSSEEEE
T ss_pred cEEEEcCCCcCHHHHHHHH-------HHcCCeeeEcccccchhHHHHHHHHcC-CCccCEEEE
Confidence 4677889999999877655 67889999999988654 444445434 245777653
No 155
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=95.61 E-value=0.042 Score=37.97 Aligned_cols=56 Identities=20% Similarity=0.370 Sum_probs=39.9
Q ss_pred EEEEcCCCCcchHHHHHHHHHHHHHhhhCCcEEEEEeCCCHHHHHHHHHHhCCeeeeEEEEcCC
Q 029880 104 VALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKAQILAERVGNVFITQVLSLPL 167 (186)
Q Consensus 104 Lvffr~~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~d~~e~~~~f~~~~~~~l~fpvL~Dp~ 167 (186)
|+.|...|||+|.+--..|. +.|+.+..|..+..+....+.+..| ...+|++...+
T Consensus 10 V~ly~~~~Cp~C~~ak~~L~-------~~gi~y~~idi~~~~~~~~~~~~~g-~~~vP~i~i~g 65 (79)
T TIGR02190 10 VVVFTKPGCPFCAKAKATLK-------EKGYDFEEIPLGNDARGRSLRAVTG-ATTVPQVFIGG 65 (79)
T ss_pred EEEEECCCCHhHHHHHHHHH-------HcCCCcEEEECCCChHHHHHHHHHC-CCCcCeEEECC
Confidence 55677999999998877764 5678887888876655556666555 13688887544
No 156
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=95.59 E-value=0.035 Score=36.04 Aligned_cols=56 Identities=16% Similarity=0.251 Sum_probs=37.4
Q ss_pred EEEEcCCCCcchHHHHHHHHHHHHHhhhCCcEEEEEeCCCHHH-HHHHHHHhCCeeeeEEEEcCC
Q 029880 104 VALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNK-AQILAERVGNVFITQVLSLPL 167 (186)
Q Consensus 104 Lvffr~~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~d~~e~-~~~f~~~~~~~l~fpvL~Dp~ 167 (186)
|+.|...|||.|+.-...|.+. |+.+.-++.+..+. .+.+.+..+ .-.+|++...+
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~-------~i~~~~~di~~~~~~~~~l~~~~~-~~~~P~~~~~~ 58 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESL-------GIEFEEIDILEDGELREELKELSG-WPTVPQIFING 58 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHc-------CCcEEEEECCCCHHHHHHHHHHhC-CCCcCEEEECC
Confidence 4566789999999888776644 57777777776444 444555555 13678877644
No 157
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=95.52 E-value=0.038 Score=46.66 Aligned_cols=81 Identities=19% Similarity=0.221 Sum_probs=56.4
Q ss_pred CCcCCeEEECCCCCEEecccccccCCCeEEEEEEcCCCCcchHHHHHHHHHHHHHhhhCC---cEEEEEeCCCH-HHHH-
Q 029880 74 DLLGDFSIFTAAGEPVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAG---VKLIAVGVGTP-NKAQ- 148 (186)
Q Consensus 74 ~~aPdf~L~d~~G~~vsLsdl~~~~~g~vvLvffr~~wCp~C~~el~~L~~l~~ef~~~G---v~vVaIs~d~~-e~~~- 148 (186)
...|.+++-+. -...+. .|.|+||-+-..+|.+|..++..|..+..+|+..| |.+++|+.-+. .+++
T Consensus 8 ~~~p~W~i~~~----~pm~~~----~G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~~~~~s~~~~ 79 (238)
T PF04592_consen 8 KPPPPWKIGGQ----DPMLNS----LGHVTVVALLQASCYFCLLQASRLEDLREKLENEGLSNISFMVVNHQGEHSRLKY 79 (238)
T ss_pred CCCCCceECCc----hHhhhc----CCcEEeeeehhhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcCCCcchhHHH
Confidence 34566665332 223343 46788888888899999999999999999999887 57888887653 3332
Q ss_pred -HHHHHhCCeeeeEEEE
Q 029880 149 -ILAERVGNVFITQVLS 164 (186)
Q Consensus 149 -~f~~~~~~~l~fpvL~ 164 (186)
.+.++.. -.|||+-
T Consensus 80 ~~l~~r~~--~~ipVyq 94 (238)
T PF04592_consen 80 WELKRRVS--EHIPVYQ 94 (238)
T ss_pred HHHHHhCC--CCCceec
Confidence 3334444 5599996
No 158
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=95.48 E-value=0.062 Score=36.32 Aligned_cols=55 Identities=16% Similarity=0.265 Sum_probs=39.0
Q ss_pred EEEEcCCCCcchHHHHHHHHHHHHHhhhCCcEEEEEeCCCHHHHHHHHHHhCCee-eeEEEEcCC
Q 029880 104 VALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKAQILAERVGNVF-ITQVLSLPL 167 (186)
Q Consensus 104 Lvffr~~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~d~~e~~~~f~~~~~~~l-~fpvL~Dp~ 167 (186)
|.+|...+||.|++-...|. +.|+.+-.+..+......+...+.| . ..|++...+
T Consensus 1 v~ly~~~~Cp~C~~ak~~L~-------~~~i~~~~~di~~~~~~~~~~~~~g--~~~vP~v~~~g 56 (72)
T TIGR02194 1 ITVYSKNNCVQCKMTKKALE-------EHGIAFEEINIDEQPEAIDYVKAQG--FRQVPVIVADG 56 (72)
T ss_pred CEEEeCCCCHHHHHHHHHHH-------HCCCceEEEECCCCHHHHHHHHHcC--CcccCEEEECC
Confidence 35677899999998887775 4688888888876554444444556 4 678887644
No 159
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=95.41 E-value=0.051 Score=41.32 Aligned_cols=42 Identities=17% Similarity=0.326 Sum_probs=30.2
Q ss_pred CCCcchHHHHHHHHHHHHHhhhCCcEEEEEeCCCHHH----HHHHHH
Q 029880 110 FGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNK----AQILAE 152 (186)
Q Consensus 110 ~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~d~~e~----~~~f~~ 152 (186)
+|||.|+.-.|.+.+.... ...+..+|-|.+|+... .-.|+.
T Consensus 36 sWCPDC~~aep~v~~~f~~-~~~~~~lv~v~VG~r~~Wkdp~n~fR~ 81 (119)
T PF06110_consen 36 SWCPDCVAAEPVVEKAFKK-APENARLVYVEVGDRPEWKDPNNPFRT 81 (119)
T ss_dssp BSSHHHHHHHHHHHHHHHH--STTEEEEEEE---HHHHC-TTSHHHH
T ss_pred cccHHHHHHHHHHHHHHHh-CCCCceEEEEEcCCHHHhCCCCCCceE
Confidence 3999999999999998887 44588999999988654 234665
No 160
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.40 E-value=0.026 Score=50.28 Aligned_cols=60 Identities=22% Similarity=0.235 Sum_probs=42.4
Q ss_pred CeEEEEEEcCCCCcchHHHHHHHHHHHHHhhhCCcEEEEEeCCCHHHHHHHHHHhCCeee-eEEEEc
Q 029880 100 GVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKAQILAERVGNVFI-TQVLSL 165 (186)
Q Consensus 100 g~vvLvffr~~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~d~~e~~~~f~~~~~~~l~-fpvL~D 165 (186)
+...++.|++.||+.|.+..+.+.++...+++ -+.+..|..+. .+..+++++ +. ||.+.-
T Consensus 47 ~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~-~~~~~~vd~~~---~~~~~~~y~--i~gfPtl~~ 107 (383)
T KOG0191|consen 47 DSPWLVEFYAPWCGHCKKLAPTYKKLAKALKG-KVKIGAVDCDE---HKDLCEKYG--IQGFPTLKV 107 (383)
T ss_pred CCceEEEEECCCCcchhhhchHHHHHHHHhcC-ceEEEEeCchh---hHHHHHhcC--CccCcEEEE
Confidence 46777888899999999999999999888877 34444444444 444555665 53 566653
No 161
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=95.33 E-value=0.035 Score=47.33 Aligned_cols=39 Identities=18% Similarity=0.181 Sum_probs=31.7
Q ss_pred EEEEEEcCCCCcchHHHHHHHHHHHHHhhhCCcEEEEEeCCC
Q 029880 102 AVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGT 143 (186)
Q Consensus 102 vvLvffr~~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~d~ 143 (186)
.-|+||....||+|..+.|-|+.+.++ .|+.|++||.|.
T Consensus 145 ~GL~fFy~s~Cp~C~~~aPil~~fa~~---yg~~v~~VS~DG 183 (248)
T PRK13703 145 YGLMFFYRGQDPIDGQLAQVINDFRDT---YGLSVIPVSVDG 183 (248)
T ss_pred ceEEEEECCCCchhHHHHHHHHHHHHH---hCCeEEEEecCC
Confidence 334445558899999999999999875 589999999974
No 162
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=95.08 E-value=0.11 Score=36.24 Aligned_cols=60 Identities=15% Similarity=0.202 Sum_probs=39.2
Q ss_pred EEEEcCCCCcchHHHHHHHHHHHHHhhhCCcEEEEEeCCCH-HHHHHHHHHhCCe-eeeEEEEc
Q 029880 104 VALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTP-NKAQILAERVGNV-FITQVLSL 165 (186)
Q Consensus 104 Lvffr~~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~d~~-e~~~~f~~~~~~~-l~fpvL~D 165 (186)
|..|...|||+|.+-...|.++..++ .|+.+.-|+.+.. ....++.+..+.. ..+|.+.-
T Consensus 3 v~iy~~~~C~~C~~a~~~L~~l~~~~--~~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~ifi 64 (85)
T PRK11200 3 VVIFGRPGCPYCVRAKELAEKLSEER--DDFDYRYVDIHAEGISKADLEKTVGKPVETVPQIFV 64 (85)
T ss_pred EEEEeCCCChhHHHHHHHHHhhcccc--cCCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEEE
Confidence 56778999999999999999988654 5777777777642 2233344434410 24666653
No 163
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=95.03 E-value=0.05 Score=46.56 Aligned_cols=62 Identities=15% Similarity=0.150 Sum_probs=42.7
Q ss_pred eEEEEEEcCCCCcchHHHHHHHHHHHHHhhhCCcEEEEEeCCCH---H-----HHHHHHHHhCCeeee---EEEEcCC
Q 029880 101 VAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTP---N-----KAQILAERVGNVFIT---QVLSLPL 167 (186)
Q Consensus 101 ~vvLvffr~~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~d~~---e-----~~~~f~~~~~~~l~f---pvL~Dp~ 167 (186)
..-|+||....||+|....|.|+.+.++ .|+.|++||.|.. + .-...++++| +.+ -+|.++.
T Consensus 151 ~~gL~fFy~~~C~~C~~~apil~~fa~~---ygi~v~~VS~DG~~~p~fp~~~~d~gqa~~l~--v~~~Pal~Lv~~~ 223 (256)
T TIGR02739 151 SYGLFFFYRGKSPISQKMAPVIQAFAKE---YGISVIPISVDGTLIPGLPNSRSDSGQAQHLG--VKYFPALYLVNPK 223 (256)
T ss_pred ceeEEEEECCCCchhHHHHHHHHHHHHH---hCCeEEEEecCCCCCCCCCCccCChHHHHhcC--CccCceEEEEECC
Confidence 3444555558899999999999998875 4899999999853 1 1133456667 543 4456665
No 164
>PRK10329 glutaredoxin-like protein; Provisional
Probab=94.82 E-value=0.13 Score=36.04 Aligned_cols=56 Identities=16% Similarity=0.196 Sum_probs=38.8
Q ss_pred EEEEcCCCCcchHHHHHHHHHHHHHhhhCCcEEEEEeCCCHHHHHHHHHHhCCeeeeEEEEcCC
Q 029880 104 VALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKAQILAERVGNVFITQVLSLPL 167 (186)
Q Consensus 104 Lvffr~~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~d~~e~~~~f~~~~~~~l~fpvL~Dp~ 167 (186)
|..|-..|||+|..--..| +++|+.+--|..+..+.+.+.....| .-..|++...+
T Consensus 3 v~lYt~~~Cp~C~~ak~~L-------~~~gI~~~~idi~~~~~~~~~~~~~g-~~~vPvv~i~~ 58 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAM-------ESRGFDFEMINVDRVPEAAETLRAQG-FRQLPVVIAGD 58 (81)
T ss_pred EEEEeCCCCHhHHHHHHHH-------HHCCCceEEEECCCCHHHHHHHHHcC-CCCcCEEEECC
Confidence 4567789999999866555 56899988888886555444444445 13678887655
No 165
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=94.74 E-value=0.17 Score=33.83 Aligned_cols=57 Identities=19% Similarity=0.317 Sum_probs=38.9
Q ss_pred EEEEcCCCCcchHHHHHHHHHHHHHhhhCCcEEEEEeCCC-HHHHHHHHHHhCCeeeeEEEEcCC
Q 029880 104 VALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGT-PNKAQILAERVGNVFITQVLSLPL 167 (186)
Q Consensus 104 Lvffr~~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~d~-~e~~~~f~~~~~~~l~fpvL~Dp~ 167 (186)
|..|...|||.|.+-...|+ +.|+.+-.+..+. .+..+++.+..+....+|.+.-.+
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~-------~~~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~i~g 59 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLD-------KKGVDYEEIDVDGDPALREEMINRSGGRRTVPQIFIGD 59 (75)
T ss_pred EEEEeCCCChHHHHHHHHHH-------HCCCcEEEEECCCCHHHHHHHHHHhCCCCccCEEEECC
Confidence 46778899999998776665 4677777777765 455566666666222678776544
No 166
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=94.42 E-value=0.052 Score=50.43 Aligned_cols=34 Identities=24% Similarity=0.351 Sum_probs=30.7
Q ss_pred CCeEEEEEEcCCCCcchHHHHHHHHHHHHHhhhC
Q 029880 99 EGVAVVALLRHFGCPCCWELASALKESKARFDSA 132 (186)
Q Consensus 99 ~g~vvLvffr~~wCp~C~~el~~L~~l~~ef~~~ 132 (186)
.++=|||-|.+.||+.|.+..|.+.++.+.+++.
T Consensus 383 e~KdVLvEfyAPWCgHCk~laP~~eeLAe~~~~~ 416 (493)
T KOG0190|consen 383 EGKDVLVEFYAPWCGHCKALAPIYEELAEKYKDD 416 (493)
T ss_pred cccceEEEEcCcccchhhhhhhHHHHHHHHhcCC
Confidence 4577888888999999999999999999999886
No 167
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=94.35 E-value=0.11 Score=35.18 Aligned_cols=58 Identities=19% Similarity=0.174 Sum_probs=36.2
Q ss_pred EEEEcCCCCcchHHHHHHHHHHHHHhhhCCcEEEEEeCCCH-HHHHHHH-HHhCCeeeeEEEEcCC
Q 029880 104 VALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTP-NKAQILA-ERVGNVFITQVLSLPL 167 (186)
Q Consensus 104 Lvffr~~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~d~~-e~~~~f~-~~~~~~l~fpvL~Dp~ 167 (186)
|++|-..|||.|..--..|.++.- .+.++=|..+.. +.++... +..| ...+|.+...+
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~-----~~~~~~v~~~~~~~~~~~~~~~~~g-~~~~P~v~~~g 61 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGV-----KPAVVELDQHEDGSEIQDYLQELTG-QRTVPNVFIGG 61 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCC-----CcEEEEEeCCCChHHHHHHHHHHhC-CCCCCeEEECC
Confidence 456668999999998888877643 345666665543 4444433 4445 12677776543
No 168
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.34 E-value=0.12 Score=39.47 Aligned_cols=45 Identities=22% Similarity=0.335 Sum_probs=34.6
Q ss_pred CCCcchHHHHHHHHHHHHHhhhCCcEEEEEeCCCHHH----HHHHHHHhC
Q 029880 110 FGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNK----AQILAERVG 155 (186)
Q Consensus 110 ~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~d~~e~----~~~f~~~~~ 155 (186)
+|||.|..-.|-+.+..+ -...++.+|-|.+|+.+. .-.|+.+.+
T Consensus 43 SWCPdCV~AEPvi~~alk-~ap~~~~~v~v~VG~rp~Wk~p~n~FR~d~~ 91 (128)
T KOG3425|consen 43 SWCPDCVAAEPVINEALK-HAPEDVHFVHVYVGNRPYWKDPANPFRKDPG 91 (128)
T ss_pred cCCchHHHhhHHHHHHHH-hCCCceEEEEEEecCCCcccCCCCccccCCC
Confidence 499999999999998877 346789999999998654 334555444
No 169
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=94.16 E-value=0.086 Score=39.53 Aligned_cols=32 Identities=19% Similarity=0.337 Sum_probs=27.5
Q ss_pred CCeEEEEEEcCCCCcchHHHHHHHHHHHHHhh
Q 029880 99 EGVAVVALLRHFGCPCCWELASALKESKARFD 130 (186)
Q Consensus 99 ~g~vvLvffr~~wCp~C~~el~~L~~l~~ef~ 130 (186)
.+++.|+.|...+||+|+...+.+.++..++.
T Consensus 4 ~a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~ 35 (154)
T cd03023 4 NGDVTIVEFFDYNCGYCKKLAPELEKLLKEDP 35 (154)
T ss_pred CCCEEEEEEECCCChhHHHhhHHHHHHHHHCC
Confidence 46888999999999999999999988876653
No 170
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=93.93 E-value=0.28 Score=32.98 Aligned_cols=56 Identities=20% Similarity=0.445 Sum_probs=36.9
Q ss_pred EEEEcCCCCcchHHHHHHHHHHHHHhhhCCcEEEEEeCCC-HHHHHHHHHHhCCeeeeEEEEcCC
Q 029880 104 VALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGT-PNKAQILAERVGNVFITQVLSLPL 167 (186)
Q Consensus 104 Lvffr~~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~d~-~e~~~~f~~~~~~~l~fpvL~Dp~ 167 (186)
|..|-..|||.|++-...|. +.|+.+..+..+. ++...++.+..+ ...+|++...+
T Consensus 3 v~ly~~~~C~~C~ka~~~L~-------~~gi~~~~~di~~~~~~~~el~~~~g-~~~vP~v~i~~ 59 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLR-------EKGLPYVEINIDIFPERKAELEERTG-SSVVPQIFFNE 59 (73)
T ss_pred EEEEecCCChhHHHHHHHHH-------HCCCceEEEECCCCHHHHHHHHHHhC-CCCcCEEEECC
Confidence 34566799999998776665 4788888888875 344445555544 13567775444
No 171
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=93.71 E-value=0.24 Score=33.16 Aligned_cols=56 Identities=21% Similarity=0.392 Sum_probs=36.4
Q ss_pred EEEEcCCCCcchHHHHHHHHHHHHHhhhCCcEEEEEeCCCHHHHHHHHHHhCCeeeeEEEEcCC
Q 029880 104 VALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKAQILAERVGNVFITQVLSLPL 167 (186)
Q Consensus 104 Lvffr~~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~d~~e~~~~f~~~~~~~l~fpvL~Dp~ 167 (186)
|+.|-..|||+|.+-...|. +.|+.+.-+..+.....+.+.+..| ...+|++.-.+
T Consensus 3 v~lys~~~Cp~C~~ak~~L~-------~~~i~~~~~~v~~~~~~~~~~~~~g-~~~vP~ifi~g 58 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQ-------ENGISYEEIPLGKDITGRSLRAVTG-AMTVPQVFIDG 58 (72)
T ss_pred EEEEECCCCHHHHHHHHHHH-------HcCCCcEEEECCCChhHHHHHHHhC-CCCcCeEEECC
Confidence 45566899999998866665 4677777777765554445544444 13678775433
No 172
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=93.71 E-value=0.26 Score=37.44 Aligned_cols=43 Identities=23% Similarity=0.455 Sum_probs=35.0
Q ss_pred CCeEEEEEEcCCCCcchHHHHHHHHHHHHHh-hhCCcEEEEEeC
Q 029880 99 EGVAVVALLRHFGCPCCWELASALKESKARF-DSAGVKLIAVGV 141 (186)
Q Consensus 99 ~g~vvLvffr~~wCp~C~~el~~L~~l~~ef-~~~Gv~vVaIs~ 141 (186)
..+++|+.|....||+|++..+.+.++.+++ +...+.++-...
T Consensus 11 ~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~ 54 (162)
T PF13462_consen 11 DAPITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPV 54 (162)
T ss_dssp TTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEES
T ss_pred CCCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEc
Confidence 5688999999999999999999999999887 444577777655
No 173
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=93.63 E-value=0.26 Score=34.45 Aligned_cols=58 Identities=21% Similarity=0.341 Sum_probs=38.8
Q ss_pred EEEEcCCCCcchHHHHHHHHHHHHHhhhCCcEEEEEeCCC--HHHHHHHHHHhCCeeeeEEEEcCCC
Q 029880 104 VALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGT--PNKAQILAERVGNVFITQVLSLPLE 168 (186)
Q Consensus 104 Lvffr~~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~d~--~e~~~~f~~~~~~~l~fpvL~Dp~~ 168 (186)
+..|--.|||+|.+--..|. ++|+...-|..+. .+..++++++..+-.+.|++...+.
T Consensus 3 v~iyt~~~CPyC~~ak~~L~-------~~g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i~~~ 62 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLD-------RKGVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFIGGK 62 (80)
T ss_pred EEEEECCCCchHHHHHHHHH-------HcCCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEECCE
Confidence 34555778999998766555 6777666655554 4477788777632356888876654
No 174
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=93.58 E-value=0.27 Score=34.87 Aligned_cols=57 Identities=12% Similarity=0.103 Sum_probs=34.2
Q ss_pred eEEEEEEcC----CCCcchHHHHHHHHHHHHHhhhCCcEEEEEeCCCHHHHHHHHHH-hCCeeeeEEEEc
Q 029880 101 VAVVALLRH----FGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKAQILAER-VGNVFITQVLSL 165 (186)
Q Consensus 101 ~vvLvffr~----~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~d~~e~~~~f~~~-~~~~l~fpvL~D 165 (186)
..|++|--+ .|||+|.+-...|.+ .|+.+-.|..+....+++...+ .| .-++|.+.-
T Consensus 8 ~~vvvf~k~~~~~~~Cp~C~~ak~~L~~-------~~i~y~~idv~~~~~~~~~l~~~~g-~~tvP~vfi 69 (90)
T cd03028 8 NPVVLFMKGTPEEPRCGFSRKVVQILNQ-------LGVDFGTFDILEDEEVRQGLKEYSN-WPTFPQLYV 69 (90)
T ss_pred CCEEEEEcCCCCCCCCcHHHHHHHHHHH-------cCCCeEEEEcCCCHHHHHHHHHHhC-CCCCCEEEE
Confidence 444455433 699999987655554 4566666666555555555444 34 236777754
No 175
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=93.39 E-value=0.36 Score=34.89 Aligned_cols=58 Identities=19% Similarity=0.092 Sum_probs=35.5
Q ss_pred eEEEEEEcC----CCCcchHHHHHHHHHHHHHhhhCCcEEEEEeCCCHHHHHHHH-HHhCCeeeeEEEEcC
Q 029880 101 VAVVALLRH----FGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKAQILA-ERVGNVFITQVLSLP 166 (186)
Q Consensus 101 ~vvLvffr~----~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~d~~e~~~~f~-~~~~~~l~fpvL~Dp 166 (186)
..|++|-.+ +|||+|.+--..|. +.|+....+..++...+++.. +..| .-++|.+...
T Consensus 12 ~~Vvvf~kg~~~~~~Cp~C~~ak~lL~-------~~~i~~~~~di~~~~~~~~~l~~~tg-~~tvP~vfi~ 74 (97)
T TIGR00365 12 NPVVLYMKGTPQFPQCGFSARAVQILK-------ACGVPFAYVNVLEDPEIRQGIKEYSN-WPTIPQLYVK 74 (97)
T ss_pred CCEEEEEccCCCCCCCchHHHHHHHHH-------HcCCCEEEEECCCCHHHHHHHHHHhC-CCCCCEEEEC
Confidence 445555554 79999997765554 456777777776545555444 4444 1357777543
No 176
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=92.91 E-value=0.043 Score=51.67 Aligned_cols=60 Identities=17% Similarity=0.204 Sum_probs=46.5
Q ss_pred eEEEEEEcCCCCcchHHHHHHHHHHHHHhhhC-C-cEEEEEeCCCHHHHHHHHHHhCCeee-eEEE
Q 029880 101 VAVVALLRHFGCPCCWELASALKESKARFDSA-G-VKLIAVGVGTPNKAQILAERVGNVFI-TQVL 163 (186)
Q Consensus 101 ~vvLvffr~~wCp~C~~el~~L~~l~~ef~~~-G-v~vVaIs~d~~e~~~~f~~~~~~~l~-fpvL 163 (186)
+.-+|-|.++||+.|+...|.+.++.+.++.= + +.|-+|++-+ +...+.+++++ ++ ||+|
T Consensus 58 ~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~-~~N~~lCRef~--V~~~Ptl 120 (606)
T KOG1731|consen 58 KAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCAD-EENVKLCREFS--VSGYPTL 120 (606)
T ss_pred hhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccc-hhhhhhHhhcC--CCCCcee
Confidence 56788889999999999999999998877643 2 4555666654 45567889999 86 7887
No 177
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=92.79 E-value=0.32 Score=33.04 Aligned_cols=56 Identities=20% Similarity=0.306 Sum_probs=36.4
Q ss_pred EEEEcCCCCcchHHHHHHHHHHHHHhhhCCcEEEEEeCCC-HHHHHHHHHHhCCeeeeEEEEcCC
Q 029880 104 VALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGT-PNKAQILAERVGNVFITQVLSLPL 167 (186)
Q Consensus 104 Lvffr~~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~d~-~e~~~~f~~~~~~~l~fpvL~Dp~ 167 (186)
|..|...|||.|.+-...|.+ .|+.+--+..+. ++..+++.+..| -..+|++.-.+
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~-------~~i~~~~~di~~~~~~~~~~~~~~g-~~~vP~i~i~g 57 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSS-------KGVTFTEIRVDGDPALRDEMMQRSG-RRTVPQIFIGD 57 (79)
T ss_pred CEEEecCCChhHHHHHHHHHH-------cCCCcEEEEecCCHHHHHHHHHHhC-CCCcCEEEECC
Confidence 456789999999988777764 566655556654 344556666554 24577776443
No 178
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=92.57 E-value=0.18 Score=44.90 Aligned_cols=42 Identities=17% Similarity=0.162 Sum_probs=35.9
Q ss_pred eEEEEEEcCCCCcchHHHHHHHHHHHHHhhh-CCcEEEEEeCC
Q 029880 101 VAVVALLRHFGCPCCWELASALKESKARFDS-AGVKLIAVGVG 142 (186)
Q Consensus 101 ~vvLvffr~~wCp~C~~el~~L~~l~~ef~~-~Gv~vVaIs~d 142 (186)
...++.|.+.||+.|+..++.+.++...++. .++.+..+..+
T Consensus 163 ~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~ 205 (383)
T KOG0191|consen 163 ADWLVEFYAPWCGHCKKLAPEWEKLAKLLKSKENVELGKIDAT 205 (383)
T ss_pred cceEEEEeccccHHhhhcChHHHHHHHHhccCcceEEEeeccc
Confidence 5566677899999999999999999999984 77888888877
No 179
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=92.38 E-value=0.21 Score=47.22 Aligned_cols=83 Identities=16% Similarity=0.129 Sum_probs=58.1
Q ss_pred ecccccccCCCeEEEEEEcCCCCcchHHHHHHH-HHHHHHhhhCCcEEEEEeCC-CHHHHHHHHHHhC-CeeeeEEEEcC
Q 029880 90 LFKDLWDQNEGVAVVALLRHFGCPCCWELASAL-KESKARFDSAGVKLIAVGVG-TPNKAQILAERVG-NVFITQVLSLP 166 (186)
Q Consensus 90 sLsdl~~~~~g~vvLvffr~~wCp~C~~el~~L-~~l~~ef~~~Gv~vVaIs~d-~~e~~~~f~~~~~-~~l~fpvL~Dp 166 (186)
.|.+.+.+.+++.|+++|.|.||-.|++.-+.. .+....++-.|+.++=+... +..+.+++.++++ +.+|.-++.|+
T Consensus 464 ~L~~~la~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~~vlLqaDvT~~~p~~~~lLk~~~~~G~P~~~ff~~ 543 (569)
T COG4232 464 ELDQALAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQDVVLLQADVTANDPAITALLKRLGVFGVPTYLFFGP 543 (569)
T ss_pred HHHHHHHhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcCCeEEEEeeecCCCHHHHHHHHHcCCCCCCEEEEECC
Confidence 344444433445999999999999999876644 36677778888877776654 3556777777775 44788888997
Q ss_pred CCCccc
Q 029880 167 LEVTPS 172 (186)
Q Consensus 167 ~~~~~~ 172 (186)
++.-+.
T Consensus 544 ~g~e~~ 549 (569)
T COG4232 544 QGSEPE 549 (569)
T ss_pred CCCcCc
Confidence 764443
No 180
>PRK10638 glutaredoxin 3; Provisional
Probab=92.31 E-value=0.5 Score=32.68 Aligned_cols=55 Identities=20% Similarity=0.371 Sum_probs=36.8
Q ss_pred EEEEcCCCCcchHHHHHHHHHHHHHhhhCCcEEEEEeCCCHH-HHHHHHHHhCCeeeeEEEEcC
Q 029880 104 VALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPN-KAQILAERVGNVFITQVLSLP 166 (186)
Q Consensus 104 Lvffr~~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~d~~e-~~~~f~~~~~~~l~fpvL~Dp 166 (186)
|..|-..|||+|++-...|. ++|+....+..+... ....+.+..| --.+|++...
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~-------~~gi~y~~~dv~~~~~~~~~l~~~~g-~~~vP~i~~~ 59 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLN-------SKGVSFQEIPIDGDAAKREEMIKRSG-RTTVPQIFID 59 (83)
T ss_pred EEEEECCCChhHHHHHHHHH-------HcCCCcEEEECCCCHHHHHHHHHHhC-CCCcCEEEEC
Confidence 45666899999998776665 456777777776543 4455666666 1257888543
No 181
>PF09695 YtfJ_HI0045: Bacterial protein of unknown function (YtfJ_HI0045); InterPro: IPR006513 These are sequences from gammaproteobacteria that are related to the Escherichia coli protein, YtfJ.
Probab=92.11 E-value=1.5 Score=35.06 Aligned_cols=107 Identities=12% Similarity=0.112 Sum_probs=66.9
Q ss_pred CCCCCCcCCeEEEC-----CCCCEEeccccccc-CCCeEEEEEEcCCCCcchHHHHHHHHHHHH-H-hhhCCcEEEEE-e
Q 029880 70 ANVGDLLGDFSIFT-----AAGEPVLFKDLWDQ-NEGVAVVALLRHFGCPCCWELASALKESKA-R-FDSAGVKLIAV-G 140 (186)
Q Consensus 70 l~~G~~aPdf~L~d-----~~G~~vsLsdl~~~-~~g~vvLvffr~~wCp~C~~el~~L~~l~~-e-f~~~Gv~vVaI-s 140 (186)
+..|+++|.+.+.| ++|..++...+-.. -.|++.||++-| +-+.-.+....|.+..+ . |....++..+| +
T Consensus 1 ~~~~~~~p~V~v~d~Gel~l~~~~~~y~~W~s~~l~GKVrviq~iA-Gr~sake~N~~l~~aik~a~f~~d~yqtttIiN 79 (160)
T PF09695_consen 1 ITLGQPVPPVTVADKGELILNGDKISYQPWNSAQLPGKVRVIQHIA-GRSSAKEMNAPLIEAIKAAKFPHDKYQTTTIIN 79 (160)
T ss_pred CcCCCcCCceEecCCceEEEcCCcccccccCccccCCCEEEEEEec-cCCchhHhhHHHHHHHHHcCCCccceeEEEEEe
Confidence 35788999998876 35556655443110 047888888754 44555555555555433 2 56666776665 4
Q ss_pred CCC-----HHHHHHHHHHhCCeeeeE-EEEcCCCCcccceeec
Q 029880 141 VGT-----PNKAQILAERVGNVFITQ-VLSLPLEVTPSLFKFH 177 (186)
Q Consensus 141 ~d~-----~e~~~~f~~~~~~~l~fp-vL~Dp~~~~~~~f~~~ 177 (186)
.|+ --.++..+++..-.+++. ++.|.++.....+++.
T Consensus 80 ~dDAi~gt~~fVrss~e~~kk~~p~s~~vlD~~G~~~~aW~L~ 122 (160)
T PF09695_consen 80 LDDAIWGTGGFVRSSAEDSKKEFPWSQFVLDSNGVVRKAWQLQ 122 (160)
T ss_pred cccccccchHHHHHHHHHhhhhCCCcEEEEcCCCceeccccCC
Confidence 443 234676665554225665 7899999999988875
No 182
>PHA03050 glutaredoxin; Provisional
Probab=91.66 E-value=0.6 Score=34.57 Aligned_cols=61 Identities=13% Similarity=0.225 Sum_probs=31.1
Q ss_pred EEEEcCCCCcchHHHHHHHHHHHHHhhhCCcEEEEEeCC-CHHHHHHH-HHHhCCeeeeEEEEcCC
Q 029880 104 VALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVG-TPNKAQIL-AERVGNVFITQVLSLPL 167 (186)
Q Consensus 104 Lvffr~~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~d-~~e~~~~f-~~~~~~~l~fpvL~Dp~ 167 (186)
|+.|..+|||+|.+-...|.+..-+ ...+.++-|.-. +..++++. .+..| .-+.|.+...+
T Consensus 15 V~vys~~~CPyC~~ak~~L~~~~i~--~~~~~~i~i~~~~~~~~~~~~l~~~tG-~~tVP~IfI~g 77 (108)
T PHA03050 15 VTIFVKFTCPFCRNALDILNKFSFK--RGAYEIVDIKEFKPENELRDYFEQITG-GRTVPRIFFGK 77 (108)
T ss_pred EEEEECCCChHHHHHHHHHHHcCCC--cCCcEEEECCCCCCCHHHHHHHHHHcC-CCCcCEEEECC
Confidence 4456699999998877666544211 112334444321 22334444 44444 23567665433
No 183
>PF07976 Phe_hydrox_dim: Phenol hydroxylase, C-terminal dimerisation domain ; InterPro: IPR012941 Phenol hydroxylase is a homodimer which hydroxylates phenol to catechol, or similar products. The enzyme is comprised of three domains. The first two domains form the active site. The third domain, this domain, is involved in forming the dimerisation interface. The domain adopts a thioredoxin-like fold [].; PDB: 2DKH_A 2DKI_A 1PN0_A 1FOH_D.
Probab=91.62 E-value=0.13 Score=41.06 Aligned_cols=110 Identities=14% Similarity=0.122 Sum_probs=65.7
Q ss_pred CcCCCCCCCCcCCeEEEC-CCCCEEecccccccCCCeEEEEEEcCCCCcchHHHHHHHHHHHH-------HhhhCC----
Q 029880 66 TEFPANVGDLLGDFSIFT-AAGEPVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKA-------RFDSAG---- 133 (186)
Q Consensus 66 ~~~~l~~G~~aPdf~L~d-~~G~~vsLsdl~~~~~g~vvLvffr~~wCp~C~~el~~L~~l~~-------ef~~~G---- 133 (186)
....+.+|..+|+..+.. .||+++.|.+.....++.-|++|--..-.+.+...+..|.+... .|...+
T Consensus 26 ~a~~l~~G~Rlp~~~v~r~aD~~p~~l~~~l~sdGrfri~vFagd~~~~~~~~~l~~l~~~L~~~~s~~~r~~~~~~~~~ 105 (169)
T PF07976_consen 26 LAGGLRPGRRLPSAKVVRHADGNPVHLQDDLPSDGRFRILVFAGDISLPEQLSRLSALADYLESPSSFLSRFTPKDRDPD 105 (169)
T ss_dssp GBTTS-TTCB----EEEETTTTEEEEGGGG--SSS-EEEEEEEETTTTCHCCCHHHHHHHHHHSTTSHHHHHSBTTS-TT
T ss_pred cccCcCCccccCCceEEEEcCCCChhHhhhcccCCCEEEEEEeCCCccchhHHHHHHHHHHHHhcchHHHhcCCCCCCCC
Confidence 345789999999999865 79999999987764445677777666666776666666666443 443332
Q ss_pred --cEEEEEeCCCH---------HHHHHHHHHhCCeee-eEEEEcC------CCCcccceeec
Q 029880 134 --VKLIAVGVGTP---------NKAQILAERVGNVFI-TQVLSLP------LEVTPSLFKFH 177 (186)
Q Consensus 134 --v~vVaIs~d~~---------e~~~~f~~~~~~~l~-fpvL~Dp------~~~~~~~f~~~ 177 (186)
++++.|..... +..+.+.++++ +. +.|++|. .+..++.|||.
T Consensus 106 s~~~~~~I~~~~~~~~e~~dlP~~~~p~~~~~~--~~~~~vy~Dd~~~~~~~g~~y~~~Gid 165 (169)
T PF07976_consen 106 SVFDVLLIHSSPRDEVELFDLPEIFRPFDGKRG--WDYWKVYVDDESYHSGHGDAYEKYGID 165 (169)
T ss_dssp SSEEEEEEESS-CCCS-GGGS-CCCS-EETTTT--C--SSEEE-S-SSSSTT--HHHHCTBB
T ss_pred CeeEEEEEecCCCCceeHHHCcHhhCcccCCCC--ccceeEEecCcccccCcccHHHhhCCC
Confidence 88999987642 23556666677 64 4788885 36777777765
No 184
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=90.74 E-value=0.38 Score=34.90 Aligned_cols=52 Identities=12% Similarity=0.135 Sum_probs=29.3
Q ss_pred EEcCCCCcchHHHHHHHHHHHHHhhhCCcEEEEEeCCCHHH----HHHHHHHhCCeeeeEEEEc
Q 029880 106 LLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNK----AQILAERVGNVFITQVLSL 165 (186)
Q Consensus 106 ffr~~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~d~~e~----~~~f~~~~~~~l~fpvL~D 165 (186)
.|-.+|||+|.+--..|. +.|+..-.|..+..+. .+.+.+..| --++|.+.-
T Consensus 12 vysk~~Cp~C~~ak~~L~-------~~~i~~~~vdid~~~~~~~~~~~l~~~tg-~~tvP~Vfi 67 (99)
T TIGR02189 12 IFSRSSCCMCHVVKRLLL-------TLGVNPAVHEIDKEPAGKDIENALSRLGC-SPAVPAVFV 67 (99)
T ss_pred EEECCCCHHHHHHHHHHH-------HcCCCCEEEEcCCCccHHHHHHHHHHhcC-CCCcCeEEE
Confidence 344799999997766544 4466555666654322 233334344 125677653
No 185
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=90.70 E-value=0.81 Score=32.08 Aligned_cols=60 Identities=15% Similarity=0.217 Sum_probs=36.5
Q ss_pred EEEEcCCCCcchHHHHHHHHHHHHHhhhCCcEEEEEeCCC-HHHHHHHHHHhCCe-eeeEEEEc
Q 029880 104 VALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGT-PNKAQILAERVGNV-FITQVLSL 165 (186)
Q Consensus 104 Lvffr~~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~d~-~e~~~~f~~~~~~~-l~fpvL~D 165 (186)
|+.|-..|||+|.+-...|.++..+. .++.+.-|+.+. ......+.+..+.. ...|++.-
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~--~~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~ifi 63 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIER--ADFEFRYIDIHAEGISKADLEKTVGKPVETVPQIFV 63 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCccc--CCCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEEE
Confidence 56677889999999888887765433 245666666653 22233455555510 25677653
No 186
>PRK10824 glutaredoxin-4; Provisional
Probab=90.39 E-value=0.77 Score=34.62 Aligned_cols=54 Identities=11% Similarity=0.136 Sum_probs=32.3
Q ss_pred eEEEEEEcC----CCCcchHHHHHHHHHHHHHhhhCCcEEEEEeCCCHHHHHHHH-HHhCCee-eeEEE
Q 029880 101 VAVVALLRH----FGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKAQILA-ERVGNVF-ITQVL 163 (186)
Q Consensus 101 ~vvLvffr~----~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~d~~e~~~~f~-~~~~~~l-~fpvL 163 (186)
..|++|--+ .|||+|.+-..-|.++ |+..-.|..+....++... +..| + ++|-+
T Consensus 15 ~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~-------~i~~~~idi~~d~~~~~~l~~~sg--~~TVPQI 74 (115)
T PRK10824 15 NPILLYMKGSPKLPSCGFSAQAVQALSAC-------GERFAYVDILQNPDIRAELPKYAN--WPTFPQL 74 (115)
T ss_pred CCEEEEECCCCCCCCCchHHHHHHHHHHc-------CCCceEEEecCCHHHHHHHHHHhC--CCCCCeE
Confidence 556666666 5999999887766654 4544445555444444444 4445 4 45554
No 187
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=89.33 E-value=0.75 Score=40.69 Aligned_cols=32 Identities=19% Similarity=0.180 Sum_probs=28.2
Q ss_pred eEEEEEEcCCCCcchHHHHHHHHHHHHHhhhC
Q 029880 101 VAVVALLRHFGCPCCWELASALKESKARFDSA 132 (186)
Q Consensus 101 ~vvLvffr~~wCp~C~~el~~L~~l~~ef~~~ 132 (186)
-+|++.|.|.||++.+...|-+.+....++++
T Consensus 14 elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e 45 (375)
T KOG0912|consen 14 ELVFVNFYADWCRFSQMLKPIFEEAAAKFKQE 45 (375)
T ss_pred eEEeeeeehhhchHHHHHhHHHHHHHHHHHHh
Confidence 68899999999999999999999988777644
No 188
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=89.03 E-value=0.81 Score=35.34 Aligned_cols=38 Identities=24% Similarity=0.527 Sum_probs=30.7
Q ss_pred CCeEEEEEEcCCCCcchHHHHHHHHHHHHHhhhCCcEEE
Q 029880 99 EGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLI 137 (186)
Q Consensus 99 ~g~vvLvffr~~wCp~C~~el~~L~~l~~ef~~~Gv~vV 137 (186)
.+++.|+.|....||+|...-+.+.++..++ ..++.+.
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~-~~~v~~~ 51 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKL-PKDVKFE 51 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhC-CCCceEE
Confidence 3578888888999999999999999988887 3355554
No 189
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=88.90 E-value=0.64 Score=32.25 Aligned_cols=56 Identities=25% Similarity=0.351 Sum_probs=42.2
Q ss_pred EEEEcCCCCcchHHHHHHHHHHHHHhhhCCcEEEEEeCCCHHHHHHHHHHhCCeeeeEEEEcCC
Q 029880 104 VALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKAQILAERVGNVFITQVLSLPL 167 (186)
Q Consensus 104 Lvffr~~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~d~~e~~~~f~~~~~~~l~fpvL~Dp~ 167 (186)
|++|-..+|+.|..-...|.++. .+.++.+..|+.++.+. +.++++ ..-||+.-.+
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~---~~~~~~l~~vDI~~d~~---l~~~Y~--~~IPVl~~~~ 57 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVA---AEFPFELEEVDIDEDPE---LFEKYG--YRIPVLHIDG 57 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCC---TTSTCEEEEEETTTTHH---HHHHSC--TSTSEEEETT
T ss_pred EEEEcCCCCChHHHHHHHHHHHH---hhcCceEEEEECCCCHH---HHHHhc--CCCCEEEEcC
Confidence 67888999999998777776643 34568899999886555 667999 8888887554
No 190
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=88.21 E-value=0.45 Score=36.36 Aligned_cols=60 Identities=10% Similarity=0.086 Sum_probs=37.9
Q ss_pred EEEEcCCCCcchHHHHHHHHHHHHHhhhCCcEEEEEeCC----CHHHHHHHHHHhCCeeeeEEEEcCCCCccc
Q 029880 104 VALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVG----TPNKAQILAERVGNVFITQVLSLPLEVTPS 172 (186)
Q Consensus 104 Lvffr~~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~d----~~e~~~~f~~~~~~~l~fpvL~Dp~~~~~~ 172 (186)
|.+|...+|+.|++-... ++++|+.+..|... +.+.++++.+..+ ..+.-+....+...+
T Consensus 2 i~iY~~~~C~~C~ka~~~-------L~~~gi~~~~idi~~~~~~~~eL~~~l~~~~--~g~~~lin~~~~~~k 65 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAW-------LEEHDIPFTERNIFSSPLTIDEIKQILRMTE--DGTDEIISTRSKVFQ 65 (131)
T ss_pred EEEEeCCCChHHHHHHHH-------HHHcCCCcEEeeccCChhhHHHHHHHHHHhc--CCHHHHHhcCcHHHH
Confidence 557789999999986644 44567766666543 2456888888775 444344444444333
No 191
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=87.74 E-value=1.1 Score=33.26 Aligned_cols=63 Identities=10% Similarity=0.070 Sum_probs=43.9
Q ss_pred EEEcCCCCcchHHHHHHHHHHHHHhhhCCcEEEEEeCCC----HHHHHHHHHHhCCeeeeEEEEcCCCCcccceee
Q 029880 105 ALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGT----PNKAQILAERVGNVFITQVLSLPLEVTPSLFKF 176 (186)
Q Consensus 105 vffr~~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~d~----~e~~~~f~~~~~~~l~fpvL~Dp~~~~~~~f~~ 176 (186)
.+|...+|+.|++-...|.+ +|+.+..|.... .+++.++.+..| ..+.-+....+...+..+.
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~-------~~i~~~~idi~~~~~~~~el~~l~~~~~--~~~~~lin~~~~~~k~l~~ 68 (117)
T TIGR01617 2 KVYGSPNCTTCKKARRWLEA-------NGIEYQFIDIGEDGPTREELLDILSLLE--DGIDPLLNTRGQSYRALNT 68 (117)
T ss_pred EEEeCCCCHHHHHHHHHHHH-------cCCceEEEecCCChhhHHHHHHHHHHcC--CCHHHheeCCCcchhhCCc
Confidence 46778999999988766654 677766666542 456888888888 6666566666666655543
No 192
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=87.44 E-value=1.2 Score=35.84 Aligned_cols=26 Identities=35% Similarity=0.649 Sum_probs=22.4
Q ss_pred CCeEEEEEEcCCCCcchHHHHHHHHH
Q 029880 99 EGVAVVALLRHFGCPCCWELASALKE 124 (186)
Q Consensus 99 ~g~vvLvffr~~wCp~C~~el~~L~~ 124 (186)
.++..|+.|....||+|++..+.+.+
T Consensus 76 ~~~~~i~~f~D~~Cp~C~~~~~~l~~ 101 (197)
T cd03020 76 NGKRVVYVFTDPDCPYCRKLEKELKP 101 (197)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHhh
Confidence 35778888889999999999998877
No 193
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=87.26 E-value=1.3 Score=37.12 Aligned_cols=37 Identities=16% Similarity=0.453 Sum_probs=28.4
Q ss_pred CCeEEEEEEcCCCCcchHHHHHHHHHHHHHhhhCCcEEEEE
Q 029880 99 EGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAV 139 (186)
Q Consensus 99 ~g~vvLvffr~~wCp~C~~el~~L~~l~~ef~~~Gv~vVaI 139 (186)
+++..|+.|.-..||+|++..+.+.++. +.|+.|..+
T Consensus 106 ~~k~~I~vFtDp~CpyCkkl~~~l~~~~----~~~v~v~~~ 142 (232)
T PRK10877 106 QEKHVITVFTDITCGYCHKLHEQMKDYN----ALGITVRYL 142 (232)
T ss_pred CCCEEEEEEECCCChHHHHHHHHHHHHh----cCCeEEEEE
Confidence 4677888888999999999988877653 357776543
No 194
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=87.19 E-value=1.4 Score=35.59 Aligned_cols=40 Identities=23% Similarity=0.351 Sum_probs=36.7
Q ss_pred HHHHHHHHHHhhhCCcEEEEEeCCCHHHHHHHHHHhCCeeee
Q 029880 119 ASALKESKARFDSAGVKLIAVGVGTPNKAQILAERVGNVFIT 160 (186)
Q Consensus 119 l~~L~~l~~ef~~~Gv~vVaIs~d~~e~~~~f~~~~~~~l~f 160 (186)
.|++.+...+++++|+.++.+|-++..+++.++++++ ++|
T Consensus 48 tpe~~~W~~e~k~~gi~v~vvSNn~e~RV~~~~~~l~--v~f 87 (175)
T COG2179 48 TPELRAWLAELKEAGIKVVVVSNNKESRVARAAEKLG--VPF 87 (175)
T ss_pred CHHHHHHHHHHHhcCCEEEEEeCCCHHHHHhhhhhcC--Cce
Confidence 4788999999999999999999999999999999999 766
No 195
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=87.18 E-value=0.74 Score=34.11 Aligned_cols=63 Identities=8% Similarity=0.029 Sum_probs=41.3
Q ss_pred EEEEcCCCCcchHHHHHHHHHHHHHhhhCCcEEEEEeCC----CHHHHHHHHHHhCCeeeeEEEEcCCCCccccee
Q 029880 104 VALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVG----TPNKAQILAERVGNVFITQVLSLPLEVTPSLFK 175 (186)
Q Consensus 104 Lvffr~~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~d----~~e~~~~f~~~~~~~l~fpvL~Dp~~~~~~~f~ 175 (186)
+.+|...+|+.|++-...|. ++|+.+..|... +.++++++.+..+ ..+.-+....+...+..+
T Consensus 2 i~iY~~~~C~~c~ka~~~L~-------~~gi~~~~idi~~~~~~~~el~~~~~~~~--~~~~~l~n~~~~~~k~l~ 68 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLE-------EHQIPFEERNLFKQPLTKEELKEILSLTE--NGVEDIISTRSKAFKNLN 68 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHH-------HCCCceEEEecCCCcchHHHHHHHHHHhc--CCHHHHHhcCcHHHHHcC
Confidence 45677899999998765554 467766666653 2467888888886 555545555554444433
No 196
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=85.68 E-value=3.8 Score=27.83 Aligned_cols=41 Identities=29% Similarity=0.562 Sum_probs=28.1
Q ss_pred cCCCCcchHHHHHHHHHHHHHhhhCCcEEEEEeCCCHHHHHHHHHHhC
Q 029880 108 RHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKAQILAERVG 155 (186)
Q Consensus 108 r~~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~d~~e~~~~f~~~~~ 155 (186)
.+.+||.|..-...+.++..++ |+.+-.+...+.+.+ .++|
T Consensus 6 ~~~~C~~C~~~~~~~~~~~~~~---~i~~ei~~~~~~~~~----~~yg 46 (76)
T PF13192_consen 6 FSPGCPYCPELVQLLKEAAEEL---GIEVEIIDIEDFEEI----EKYG 46 (76)
T ss_dssp ECSSCTTHHHHHHHHHHHHHHT---TEEEEEEETTTHHHH----HHTT
T ss_pred eCCCCCCcHHHHHHHHHHHHhc---CCeEEEEEccCHHHH----HHcC
Confidence 4788999998887777777665 466655555444444 5676
No 197
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=85.64 E-value=1 Score=33.26 Aligned_cols=59 Identities=14% Similarity=0.174 Sum_probs=38.0
Q ss_pred EEEcCCCCcchHHHHHHHHHHHHHhhhCCcEEEEEeCC----CHHHHHHHHHHhCCeeeeEEEEcCCCCccc
Q 029880 105 ALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVG----TPNKAQILAERVGNVFITQVLSLPLEVTPS 172 (186)
Q Consensus 105 vffr~~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~d----~~e~~~~f~~~~~~~l~fpvL~Dp~~~~~~ 172 (186)
..|...+|+.|++-...|. ++|+.+.-|... +.++++++.++.+ .++.-+....+...+
T Consensus 2 ~iY~~~~C~~c~ka~~~L~-------~~~i~~~~idi~~~~~~~~el~~~~~~~~--~~~~~l~~~~~~~~~ 64 (111)
T cd03036 2 KFYEYPKCSTCRKAKKWLD-------EHGVDYTAIDIVEEPPSKEELKKWLEKSG--LPLKKFFNTSGKSYR 64 (111)
T ss_pred EEEECCCCHHHHHHHHHHH-------HcCCceEEecccCCcccHHHHHHHHHHcC--CCHHHHHhcCCchHH
Confidence 4677899999998876555 456666665543 3466888888877 654444334443333
No 198
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=85.26 E-value=1 Score=32.63 Aligned_cols=59 Identities=12% Similarity=0.107 Sum_probs=36.8
Q ss_pred EEEcCCCCcchHHHHHHHHHHHHHhhhCCcEEEEEeCC----CHHHHHHHHHHhCCeeeeEEEEcCCCCccc
Q 029880 105 ALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVG----TPNKAQILAERVGNVFITQVLSLPLEVTPS 172 (186)
Q Consensus 105 vffr~~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~d----~~e~~~~f~~~~~~~l~fpvL~Dp~~~~~~ 172 (186)
.+|...+|+.|++-...|. ++|+.+..|... +.++++++..+.+ ..+.-+....+...+
T Consensus 2 ~iY~~~~C~~c~ka~~~L~-------~~~i~~~~idi~~~~~~~~~l~~~~~~~~--~~~~~li~~~~~~~~ 64 (105)
T cd02977 2 TIYGNPNCSTSRKALAWLE-------EHGIEYEFIDYLKEPPTKEELKELLAKLG--LGVEDLFNTRGTPYR 64 (105)
T ss_pred EEEECCCCHHHHHHHHHHH-------HcCCCcEEEeeccCCCCHHHHHHHHHhcC--CCHHHHHhcCCchHH
Confidence 5677899999998775555 456655555543 3566777777776 544444444444333
No 199
>PTZ00062 glutaredoxin; Provisional
Probab=85.06 E-value=3 Score=34.50 Aligned_cols=55 Identities=13% Similarity=0.080 Sum_probs=34.8
Q ss_pred eEEEEEEcC----CCCcchHHHHHHHHHHHHHhhhCCcEEEEEeCCCHHHHHHHH-HHhCCee-eeEEEE
Q 029880 101 VAVVALLRH----FGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKAQILA-ERVGNVF-ITQVLS 164 (186)
Q Consensus 101 ~vvLvffr~----~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~d~~e~~~~f~-~~~~~~l-~fpvL~ 164 (186)
..|++|-.+ .+||+|++-...|+ +.|+....+..+..+.+++.. +..| + ++|.+.
T Consensus 113 ~~Vvvf~Kg~~~~p~C~~C~~~k~~L~-------~~~i~y~~~DI~~d~~~~~~l~~~sg--~~TvPqVf 173 (204)
T PTZ00062 113 HKILLFMKGSKTFPFCRFSNAVVNMLN-------SSGVKYETYNIFEDPDLREELKVYSN--WPTYPQLY 173 (204)
T ss_pred CCEEEEEccCCCCCCChhHHHHHHHHH-------HcCCCEEEEEcCCCHHHHHHHHHHhC--CCCCCeEE
Confidence 455566554 69999998766555 457777777776656655554 4445 4 466654
No 200
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=84.53 E-value=1.7 Score=29.28 Aligned_cols=35 Identities=20% Similarity=0.401 Sum_probs=25.9
Q ss_pred EEEEcCCCCcchHHHHHHHHHHHHHhhhCCcEEEEE
Q 029880 104 VALLRHFGCPCCWELASALKESKARFDSAGVKLIAV 139 (186)
Q Consensus 104 Lvffr~~wCp~C~~el~~L~~l~~ef~~~Gv~vVaI 139 (186)
|..|....||.|....+.+.++.. ....++.++-+
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~-~~~~~~~~~~~ 35 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLY-ADDGGVRVVYR 35 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHh-hcCCcEEEEEe
Confidence 456789999999999999999873 33445655543
No 201
>TIGR03759 conj_TIGR03759 integrating conjugative element protein, PFL_4693 family. Members of this protein family, such as model protein PFL_4693 from Pseudomonas fluorescens Pf-5, belong to extended genomic regions that appear to be spread by conjugative transfer. Most members have a predicted N-terminal signal sequence. The function is unknown.
Probab=83.98 E-value=3.8 Score=33.88 Aligned_cols=52 Identities=23% Similarity=0.325 Sum_probs=40.0
Q ss_pred CeEEEEEEcCCCCcchHHHHHHHHHHHHHhhhCCcEEEEEe-CCCHHHHHHHHHHhCCeee
Q 029880 100 GVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVG-VGTPNKAQILAERVGNVFI 159 (186)
Q Consensus 100 g~vvLvffr~~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs-~d~~e~~~~f~~~~~~~l~ 159 (186)
+..+.+|.. ..|+.|...+..+.. ....++|..|+ .++++.++.|+.+++ |+
T Consensus 109 ~~rlalFvk-d~C~~C~~~~~~l~a-----~~~~~Diylvgs~~dD~~Ir~WA~~~~--Id 161 (200)
T TIGR03759 109 GGRLALFVK-DDCVACDARVQRLLA-----DNAPLDLYLVGSQGDDERIRQWANRHQ--ID 161 (200)
T ss_pred CCeEEEEeC-CCChHHHHHHHHHhc-----CCCceeEEEecCCCCHHHHHHHHHHcC--CC
Confidence 355666665 899999999888854 35567777777 457889999999999 65
No 202
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=82.79 E-value=5.7 Score=29.64 Aligned_cols=66 Identities=9% Similarity=0.064 Sum_probs=38.6
Q ss_pred CCeEEEEEEcCC----CCcchHHHHHHHHHHHHHhhhCCcEEEEEeCCCHHHHHHHHHHhC-CeeeeEEEEcCC
Q 029880 99 EGVAVVALLRHF----GCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKAQILAERVG-NVFITQVLSLPL 167 (186)
Q Consensus 99 ~g~vvLvffr~~----wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~d~~e~~~~f~~~~~-~~l~fpvL~Dp~ 167 (186)
++|.++|.+... ||.+|+.-+. ++..-++-+.++-+++.+..+.|. .+.+..++ ..+|+-++.++.
T Consensus 16 e~K~llVylhs~~~~~~~~fc~~~l~--~~~v~~~ln~~fv~w~~dv~~~eg-~~la~~l~~~~~P~~~~l~~~ 86 (116)
T cd02991 16 ELRFLLVYLHGDDHQDTDEFCRNTLC--APEVIEYINTRMLFWACSVAKPEG-YRVSQALRERTYPFLAMIMLK 86 (116)
T ss_pred hCCEEEEEEeCCCCccHHHHHHHHcC--CHHHHHHHHcCEEEEEEecCChHH-HHHHHHhCCCCCCEEEEEEec
Confidence 568888888888 8888865552 111122224567777777777664 44555554 115555556543
No 203
>PRK12559 transcriptional regulator Spx; Provisional
Probab=82.79 E-value=1.4 Score=33.70 Aligned_cols=61 Identities=11% Similarity=0.074 Sum_probs=38.0
Q ss_pred EEEEcCCCCcchHHHHHHHHHHHHHhhhCCcEEEEEeCC----CHHHHHHHHHHhCCeeeeEEEEcCCCCcccc
Q 029880 104 VALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVG----TPNKAQILAERVGNVFITQVLSLPLEVTPSL 173 (186)
Q Consensus 104 Lvffr~~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~d----~~e~~~~f~~~~~~~l~fpvL~Dp~~~~~~~ 173 (186)
|.+|-..+|+.|++....| +++|+.+..+... +.++++.+.+..+ ..+.-+....+...+.
T Consensus 2 i~iY~~~~C~~crkA~~~L-------~~~gi~~~~~di~~~~~s~~el~~~l~~~~--~g~~~lin~~~~~~k~ 66 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWL-------EENQIDYTEKNIVSNSMTVDELKSILRLTE--EGATEIISTRSKTFQD 66 (131)
T ss_pred EEEEeCCCChHHHHHHHHH-------HHcCCCeEEEEeeCCcCCHHHHHHHHHHcC--CCHHHHHhcCcHHHHh
Confidence 4577789999999966444 4567666665543 3567888888865 4433343444443333
No 204
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=80.99 E-value=3.4 Score=27.29 Aligned_cols=56 Identities=20% Similarity=0.098 Sum_probs=33.7
Q ss_pred EEEcCCCCcchHHHHHHHHHHHHHhhhCCcEEEEEeCCCHHHHHHHHHHhCCeeeeEEEEcCCC
Q 029880 105 ALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKAQILAERVGNVFITQVLSLPLE 168 (186)
Q Consensus 105 vffr~~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~d~~e~~~~f~~~~~~~l~fpvL~Dp~~ 168 (186)
..|...|||+|++-.-.|.+.. ..++++-|+..+. ..+|.+.++ .-..|+|.|.++
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~g-----l~~e~~~v~~~~~--~~~~~~~np-~~~vP~L~~~~g 57 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLAG-----ITVELREVELKNK--PAEMLAASP-KGTVPVLVLGNG 57 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHcC-----CCcEEEEeCCCCC--CHHHHHHCC-CCCCCEEEECCC
Confidence 3566789999998776665442 2345565555432 235555544 125799987644
No 205
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=80.67 E-value=2.4 Score=32.46 Aligned_cols=60 Identities=7% Similarity=0.123 Sum_probs=39.4
Q ss_pred EEEEcCCCCcchHHHHHHHHHHHHHhhhCCcEEEEEeCC----CHHHHHHHHHHhCCeeeeEEEEcCCCCccc
Q 029880 104 VALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVG----TPNKAQILAERVGNVFITQVLSLPLEVTPS 172 (186)
Q Consensus 104 Lvffr~~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~d----~~e~~~~f~~~~~~~l~fpvL~Dp~~~~~~ 172 (186)
+..|-..+|+.|++-. +.++++|+.+..|... +.++++.+.+..+ ..+.-+....+...+
T Consensus 2 i~iY~~~~C~~crkA~-------~~L~~~~i~~~~~d~~~~~~s~~eL~~~l~~~~--~~~~~lin~~~~~~k 65 (132)
T PRK13344 2 IKIYTISSCTSCKKAK-------TWLNAHQLSYKEQNLGKEPLTKEEILAILTKTE--NGIESIVSSKNRYAK 65 (132)
T ss_pred EEEEeCCCCHHHHHHH-------HHHHHcCCCeEEEECCCCCCCHHHHHHHHHHhC--CCHHHhhccCcHHHH
Confidence 4466789999999855 4455667776666653 3567888888877 555444444444444
No 206
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=80.44 E-value=3.8 Score=34.67 Aligned_cols=29 Identities=14% Similarity=0.320 Sum_probs=24.0
Q ss_pred CCeEEEEEEcCCCCcchHHHHHHHHHHHH
Q 029880 99 EGVAVVALLRHFGCPCCWELASALKESKA 127 (186)
Q Consensus 99 ~g~vvLvffr~~wCp~C~~el~~L~~l~~ 127 (186)
+++.+|+.|.-..||+|++...++.++.+
T Consensus 116 ~ak~~I~vFtDp~CpyC~kl~~~l~~~~~ 144 (251)
T PRK11657 116 DAPRIVYVFADPNCPYCKQFWQQARPWVD 144 (251)
T ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHhh
Confidence 45778888889999999999988877654
No 207
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=80.39 E-value=5 Score=29.37 Aligned_cols=45 Identities=16% Similarity=0.163 Sum_probs=29.0
Q ss_pred EEEEcCCCCcchHHHHHHHHHHHHHhhhCCcEEEEEeCC----CHHHHHHHHHHhC
Q 029880 104 VALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVG----TPNKAQILAERVG 155 (186)
Q Consensus 104 Lvffr~~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~d----~~e~~~~f~~~~~ 155 (186)
|.+|...+|+.|++....|. ++|+.+-.+... +.++++.+.++.|
T Consensus 1 i~iy~~~~C~~crka~~~L~-------~~~i~~~~~di~~~p~s~~eL~~~l~~~g 49 (105)
T cd03035 1 ITLYGIKNCDTVKKARKWLE-------ARGVAYTFHDYRKDGLDAATLERWLAKVG 49 (105)
T ss_pred CEEEeCCCCHHHHHHHHHHH-------HcCCCeEEEecccCCCCHHHHHHHHHHhC
Confidence 35678999999998775555 445555444432 3456666666655
No 208
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=78.25 E-value=8.2 Score=30.01 Aligned_cols=41 Identities=15% Similarity=0.433 Sum_probs=32.9
Q ss_pred EEEEcCCCCcchHHHHHHHHHHHHHhhhCCcEEEEEeCCCH
Q 029880 104 VALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTP 144 (186)
Q Consensus 104 Lvffr~~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~d~~ 144 (186)
|.+|.-.-||+|..-.+.|.++..++.+-.+....+.....
T Consensus 2 i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~~i~~~p~~l~~~ 42 (193)
T PF01323_consen 2 IEFFFDFICPWCYLASPRLRKLRAEYPDVEIEWRPFPLRPD 42 (193)
T ss_dssp EEEEEBTTBHHHHHHHHHHHHHHHHHTTCEEEEEEESSSTH
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhcCCcEEEeccccccc
Confidence 67788999999999999999999998555566666665544
No 209
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=77.74 E-value=5.2 Score=32.05 Aligned_cols=70 Identities=11% Similarity=0.126 Sum_probs=32.6
Q ss_pred CCeEEEEEEcCCCCcchHHHHH-HHHH-HHHHhhhCCcEEEEEeCCCHHHHHH-H---H----HHhCCeeeeEEEEcCCC
Q 029880 99 EGVAVVALLRHFGCPCCWELAS-ALKE-SKARFDSAGVKLIAVGVGTPNKAQI-L---A----ERVGNVFITQVLSLPLE 168 (186)
Q Consensus 99 ~g~vvLvffr~~wCp~C~~el~-~L~~-l~~ef~~~Gv~vVaIs~d~~e~~~~-f---~----~~~~~~l~fpvL~Dp~~ 168 (186)
.++.|++.+-..||..|..-.. .+.+ -..++-+++..-|=|..+....+.. | + ...| +|..++.+|++
T Consensus 36 e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~FI~VkvDree~Pdid~~y~~~~~~~~~~gG--wPl~vfltPdg 113 (163)
T PF03190_consen 36 ENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRNFIPVKVDREERPDIDKIYMNAVQAMSGSGG--WPLTVFLTPDG 113 (163)
T ss_dssp HT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH-EEEEEETTT-HHHHHHHHHHHHHHHS-----SSEEEEE-TTS
T ss_pred cCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCCEEEEEeccccCccHHHHHHHHHHHhcCCCC--CCceEEECCCC
Confidence 3578888888999999996554 2221 1112222233333345554322222 2 1 2345 99999999988
Q ss_pred Cc
Q 029880 169 VT 170 (186)
Q Consensus 169 ~~ 170 (186)
..
T Consensus 114 ~p 115 (163)
T PF03190_consen 114 KP 115 (163)
T ss_dssp -E
T ss_pred Ce
Confidence 53
No 210
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=75.38 E-value=19 Score=24.12 Aligned_cols=55 Identities=22% Similarity=0.249 Sum_probs=32.0
Q ss_pred EEEcCCCCcchHHHHHHHHHHHHHhhhCCcEEEEEeCCCHH-HHHHHHHHhCCeeeeEEEEcCC
Q 029880 105 ALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPN-KAQILAERVGNVFITQVLSLPL 167 (186)
Q Consensus 105 vffr~~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~d~~e-~~~~f~~~~~~~l~fpvL~Dp~ 167 (186)
..|...+||+|++-.-.|.+ +|+.+-.+..+..+ ...+|.+.++ .-..|+|.|.+
T Consensus 3 ~Ly~~~~sp~~~kv~~~L~~-------~gi~y~~~~v~~~~~~~~~~~~~~p-~~~vP~l~~~~ 58 (77)
T cd03041 3 ELYEFEGSPFCRLVREVLTE-------LELDVILYPCPKGSPKRDKFLEKGG-KVQVPYLVDPN 58 (77)
T ss_pred eEecCCCCchHHHHHHHHHH-------cCCcEEEEECCCChHHHHHHHHhCC-CCcccEEEeCC
Confidence 45667899999976655554 45433333333322 3345655544 13689998753
No 211
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=75.13 E-value=8.7 Score=31.53 Aligned_cols=48 Identities=21% Similarity=0.313 Sum_probs=36.9
Q ss_pred ECCCCCEEecccccccCCCeEEEEEEcCCCCcchHHHHHHHHHHHHHhhhCC
Q 029880 82 FTAAGEPVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAG 133 (186)
Q Consensus 82 ~d~~G~~vsLsdl~~~~~g~vvLvffr~~wCp~C~~el~~L~~l~~ef~~~G 133 (186)
...+|+.+-+.+. .+++.++.|.-.-||+|.+..+.|.+.+-...+..
T Consensus 70 ~~~~~~~~~~G~~----~~~v~v~~f~d~~Cp~C~~~~~~l~~~~i~~~~~~ 117 (244)
T COG1651 70 LTPDGKDVVLGNP----YAPVTVVEFFDYTCPYCKEAFPELKKKYIDDGKVR 117 (244)
T ss_pred ecCCCCcccccCC----CCCceEEEEecCcCccHHHHHHHHHHHhhhcCCCc
Confidence 3566777777776 35889999999999999999999998665554443
No 212
>TIGR03765 ICE_PFL_4695 integrating conjugative element protein, PFL_4695 family. This model describes a protein family exemplified by PFL_4695 of Pseudomonas fluorescens Pf-5. Full-length proteins in this family show some architectural variety, but this model represents a conserved domain. Most or all member proteins belong to laterally transferred chromosomal islands called integrative conjugative elements, or ICE.
Probab=74.91 E-value=14 Score=27.59 Aligned_cols=51 Identities=29% Similarity=0.283 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHhhhCCcEEEEEeCCCHHHHH-----------------HHHHHhCCee-eeEEEEcCCCC
Q 029880 117 ELASALKESKARFDSAGVKLIAVGVGTPNKAQ-----------------ILAERVGNVF-ITQVLSLPLEV 169 (186)
Q Consensus 117 ~el~~L~~l~~ef~~~Gv~vVaIs~d~~e~~~-----------------~f~~~~~~~l-~fpvL~Dp~~~ 169 (186)
.-..-|++..+++++.+..-+.|++++.+.++ .++++++ + .||+|...++.
T Consensus 35 ~S~~WL~~~~~~L~~l~AvGlVVnV~t~~~l~~Lr~lapgl~l~P~sgddLa~rL~--l~hYPvLit~tgi 103 (105)
T TIGR03765 35 ASRQWLQQNAAALKSLGAVGLVVNVETAAALQRLRALAPGLPLLPVSGDDLAERLG--LRHYPVLITATGI 103 (105)
T ss_pred HHHHHHHHHHHHHHHCCCeEEEEecCCHHHHHHHHHHcCCCcccCCCHHHHHHHhC--CCcccEEEecCcc
Confidence 34456788888999999888889999876533 4667777 7 48999887763
No 213
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=73.26 E-value=6.7 Score=24.30 Aligned_cols=57 Identities=21% Similarity=0.136 Sum_probs=32.2
Q ss_pred EEcCCCCcchHHHHHHHHHHHHHhhhCCcEEEEEeCCCHHHHHHHHHHhCCeeeeEEEEcCCCC
Q 029880 106 LLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKAQILAERVGNVFITQVLSLPLEV 169 (186)
Q Consensus 106 ffr~~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~d~~e~~~~f~~~~~~~l~fpvL~Dp~~~ 169 (186)
+|...+||.|++-...|... +..++++-+..+..... ++.+..+ --..|++.+.+..
T Consensus 3 ly~~~~~~~~~~~~~~l~~~-----~i~~~~~~~~~~~~~~~-~~~~~~~-~~~~P~l~~~~~~ 59 (71)
T cd00570 3 LYYFPGSPRSLRVRLALEEK-----GLPYELVPVDLGEGEQE-EFLALNP-LGKVPVLEDGGLV 59 (71)
T ss_pred EEeCCCCccHHHHHHHHHHc-----CCCcEEEEeCCCCCCCH-HHHhcCC-CCCCCEEEECCEE
Confidence 45567899999766655544 22345555555433222 3444444 1257899887543
No 214
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=72.24 E-value=26 Score=26.17 Aligned_cols=76 Identities=14% Similarity=0.098 Sum_probs=56.6
Q ss_pred CCeEEEEEEcCCCCcchHHHHHHHHHHHHHhhhCCcEEEEEeCCC---------HHHHHHHHHHhCCeee---e-EEEEc
Q 029880 99 EGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGT---------PNKAQILAERVGNVFI---T-QVLSL 165 (186)
Q Consensus 99 ~g~vvLvffr~~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~d~---------~e~~~~f~~~~~~~l~---f-pvL~D 165 (186)
+..+||||-....=+.=..++..|.+....+.++.+.++.|..+. ...+....++++ ++ | -+|.+
T Consensus 9 ~~R~lvv~aps~~d~~~~~q~~~L~~~~~~l~eRdi~v~~i~~~~~~~~~~~~~~~~~~~lr~~l~--~~~~~f~~vLiG 86 (118)
T PF13778_consen 9 KNRLLVVFAPSADDPRYQQQLEELQNNRCGLDERDIVVIVITGDGARSPGKPLSPEDIQALRKRLR--IPPGGFTVVLIG 86 (118)
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHhhhhccccCceEEEEEeCCccccccCcCCHHHHHHHHHHhC--CCCCceEEEEEe
Confidence 457888888888888899999999999999999999988885543 234566666666 32 3 46788
Q ss_pred CCCCcccceee
Q 029880 166 PLEVTPSLFKF 176 (186)
Q Consensus 166 p~~~~~~~f~~ 176 (186)
.||.....+.-
T Consensus 87 KDG~vK~r~~~ 97 (118)
T PF13778_consen 87 KDGGVKLRWPE 97 (118)
T ss_pred CCCcEEEecCC
Confidence 88866555443
No 215
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=70.60 E-value=1.8 Score=38.41 Aligned_cols=36 Identities=14% Similarity=0.173 Sum_probs=29.9
Q ss_pred eEEEEEEcCCCCcchHHHHHHHHHHHHHhhhCCcEE
Q 029880 101 VAVVALLRHFGCPCCWELASALKESKARFDSAGVKL 136 (186)
Q Consensus 101 ~vvLvffr~~wCp~C~~el~~L~~l~~ef~~~Gv~v 136 (186)
...++.|.+.||..|.+.-|-..+.--++++-|..|
T Consensus 44 diW~VdFYAPWC~HCKkLePiWdeVG~elkdig~Pi 79 (468)
T KOG4277|consen 44 DIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPI 79 (468)
T ss_pred CeEEEEeechhhhhcccccchhHHhCcchhhcCCce
Confidence 678899999999999999998888877777766543
No 216
>PF11072 DUF2859: Protein of unknown function (DUF2859); InterPro: IPR021300 This model describes a protein family exemplified by PFL_4695 of Pseudomonas fluorescens Pf-5. Full-length proteins in this family show some architectural variety, but this model represents a conserved domain. Most or all member proteins belong to laterally transferred chromosomal islands called integrative conjugative elements, or ICE.
Probab=69.93 E-value=18 Score=28.40 Aligned_cols=51 Identities=24% Similarity=0.172 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHhhhCCcEEEEEeCCCHHHHH-----------------HHHHHhCCee-eeEEEEcCCC
Q 029880 116 WELASALKESKARFDSAGVKLIAVGVGTPNKAQ-----------------ILAERVGNVF-ITQVLSLPLE 168 (186)
Q Consensus 116 ~~el~~L~~l~~ef~~~Gv~vVaIs~d~~e~~~-----------------~f~~~~~~~l-~fpvL~Dp~~ 168 (186)
..-..-|++..+++++.|..=++|++++.+.++ .++++++ + .||+|...++
T Consensus 72 ~~S~~WL~~~~~~L~~l~AvGlVVNV~t~~~L~~Lr~lapgl~l~P~sgddLA~rL~--l~HYPvLIt~~g 140 (142)
T PF11072_consen 72 PLSRQWLQQNAEELKQLGAVGLVVNVATEAALQRLRQLAPGLPLLPVSGDDLARRLG--LSHYPVLITATG 140 (142)
T ss_pred HHHHHHHHHHHHHHHHCCCeEEEEecCCHHHHHHHHHHcCCCeecCCCHHHHHHHhC--CCcccEEeecCC
Confidence 344556788888899999888899999876543 4567777 6 5888887665
No 217
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=67.79 E-value=6.4 Score=31.94 Aligned_cols=36 Identities=22% Similarity=0.516 Sum_probs=24.3
Q ss_pred eEEEEEEcCCCCcchHHHHHHH---HHHHHHhhhCCcEEE
Q 029880 101 VAVVALLRHFGCPCCWELASAL---KESKARFDSAGVKLI 137 (186)
Q Consensus 101 ~vvLvffr~~wCp~C~~el~~L---~~l~~ef~~~Gv~vV 137 (186)
+.-|+.|....||.|...-+.| ..+.+.+ ..|+.++
T Consensus 38 ~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~-~~~v~~~ 76 (207)
T PRK10954 38 EPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKL-PEGTKMT 76 (207)
T ss_pred CCeEEEEeCCCCccHHHhcccccchHHHHHhC-CCCCeEE
Confidence 4446777799999999988765 4555555 3455544
No 218
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=66.87 E-value=13 Score=33.81 Aligned_cols=41 Identities=15% Similarity=0.250 Sum_probs=28.2
Q ss_pred EEEEcCCCCcchHHHHHHHHHHHHHhhhCCcEEEEEeCCCHHHHHHHH
Q 029880 104 VALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKAQILA 151 (186)
Q Consensus 104 Lvffr~~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~d~~e~~~~f~ 151 (186)
|+.|-.+|||+|.+--..|. +.|+..-.|..+..+...++.
T Consensus 4 V~vys~~~Cp~C~~aK~~L~-------~~gi~~~~idi~~~~~~~~~~ 44 (410)
T PRK12759 4 VRIYTKTNCPFCDLAKSWFG-------ANDIPFTQISLDDDVKRAEFY 44 (410)
T ss_pred EEEEeCCCCHHHHHHHHHHH-------HCCCCeEEEECCCChhHHHHH
Confidence 55667999999987665554 568887777777555444443
No 219
>TIGR00995 3a0901s06TIC22 chloroplast protein import component, Tic22 family. Two families of proteins are involved in the chloroplast envelope import appartus.They are the three proteins of the outer membrane (TOC) and four proteins in the inner membrane (TIC). This family is specific for the Tic22 protein.
Probab=66.79 E-value=21 Score=30.90 Aligned_cols=79 Identities=20% Similarity=0.122 Sum_probs=51.2
Q ss_pred CCCcCCeEEECCCCCEEecccccccCCCeEEEEEEcCCCCcchHHH-HHH-HHHH---HHHhhhCCcEEEEEeCCCHHHH
Q 029880 73 GDLLGDFSIFTAAGEPVLFKDLWDQNEGVAVVALLRHFGCPCCWEL-ASA-LKES---KARFDSAGVKLIAVGVGTPNKA 147 (186)
Q Consensus 73 G~~aPdf~L~d~~G~~vsLsdl~~~~~g~vvLvffr~~wCp~C~~e-l~~-L~~l---~~ef~~~Gv~vVaIs~d~~e~~ 147 (186)
=+..|-|++.|.+|+.+-.++-- +++..-+|+ ++.+ +.+ |.++ .+++ +.+++|+.|+.|..-++
T Consensus 79 L~~VPVFtItn~~G~pvl~s~~~---~~~~~gvf~-------s~qedA~afL~~lk~~~p~l-~~~~kV~pvsL~~vYkl 147 (270)
T TIGR00995 79 LAGTSVFTVSNAQNEFVLASDND---GEKSIGLLC-------FRQEDAEAFLAQLRKRKPEV-GSQAKVVPITLDQVYKL 147 (270)
T ss_pred hcCCceEEEEcCCCCeEEEECCC---CCceEEEEE-------CCHHHHHHHHHHHHhhCccc-cCCceEEEEEHHHHHHH
Confidence 34689999999999999887652 345444433 1333 222 2233 3333 35799999998876655
Q ss_pred HHHHHHhCCeeeeEEEEcCCC
Q 029880 148 QILAERVGNVFITQVLSLPLE 168 (186)
Q Consensus 148 ~~f~~~~~~~l~fpvL~Dp~~ 168 (186)
+ ..+ +.|.++.|+.+
T Consensus 148 ~----~e~--l~F~fiP~~~q 162 (270)
T TIGR00995 148 K----VEG--IGFRFLPDPAQ 162 (270)
T ss_pred h----hcC--ccEEEeCCHHH
Confidence 3 456 88888887654
No 220
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=66.61 E-value=18 Score=23.54 Aligned_cols=51 Identities=12% Similarity=0.080 Sum_probs=27.4
Q ss_pred EcCCCCcchHHHHHHHHHHHHHhhhCCcE--EEEEeCCCHHHHHHHHHHhCCeeeeEEEEcCCC
Q 029880 107 LRHFGCPCCWELASALKESKARFDSAGVK--LIAVGVGTPNKAQILAERVGNVFITQVLSLPLE 168 (186)
Q Consensus 107 fr~~wCp~C~~el~~L~~l~~ef~~~Gv~--vVaIs~d~~e~~~~f~~~~~~~l~fpvL~Dp~~ 168 (186)
|...+||+|++-.-.|. .+|+. .+.+..+.... ..+..+ .-..|+|.|.++
T Consensus 4 y~~~~~p~~~rvr~~L~-------~~gl~~~~~~~~~~~~~~---~~~~~~-~~~vP~L~~~~~ 56 (71)
T cd03037 4 YIYEHCPFCVKARMIAG-------LKNIPVEQIILQNDDEAT---PIRMIG-AKQVPILEKDDG 56 (71)
T ss_pred EecCCCcHhHHHHHHHH-------HcCCCeEEEECCCCchHH---HHHhcC-CCccCEEEeCCC
Confidence 44678999996655554 34554 44444333221 223333 125789987633
No 221
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=66.25 E-value=17 Score=29.94 Aligned_cols=53 Identities=9% Similarity=-0.021 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHhhhCCcEEEEEeCCCHHHHHHHHHHhCCeeeeE--EEEcCCCCc
Q 029880 116 WELASALKESKARFDSAGVKLIAVGVGTPNKAQILAERVGNVFITQ--VLSLPLEVT 170 (186)
Q Consensus 116 ~~el~~L~~l~~ef~~~Gv~vVaIs~d~~e~~~~f~~~~~~~l~fp--vL~Dp~~~~ 170 (186)
....+.+.++.+++.++|+.+|.++.-+...++++.++++ ..-| ++++....+
T Consensus 20 ~~~~~~~~~~i~~~~~~gi~fv~aTGR~~~~~~~~~~~~~--~~~p~~~I~~NGa~I 74 (249)
T TIGR01485 20 NQALLRLNALLEDHRGEDSLLVYSTGRSPHSYKELQKQKP--LLTPDIWVTSVGSEI 74 (249)
T ss_pred hHHHHHHHHHHHHhhccCceEEEEcCCCHHHHHHHHhcCC--CCCCCEEEEcCCceE
Confidence 4567889999999999999888888888999999998888 7667 777555444
No 222
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=65.89 E-value=7.8 Score=32.67 Aligned_cols=50 Identities=8% Similarity=0.068 Sum_probs=37.4
Q ss_pred CCeEEEEEEcCCCCcchHHHHHHHHHHHHHhhhCCcEEEEEeCCCHHHHHHH
Q 029880 99 EGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKAQIL 150 (186)
Q Consensus 99 ~g~vvLvffr~~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~d~~e~~~~f 150 (186)
+++.+++.||+.||..|..-..-+..+.+.+ .+++++-+..+.-..+-..
T Consensus 16 ~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~--~~~~~~k~~a~~~~eis~~ 65 (227)
T KOG0911|consen 16 KGKLLVLHFWAIWAVVQKQMDQVFDHLAEYF--KNAQFLKLEAEEFPEISNL 65 (227)
T ss_pred ccchhhhhhhhhhhhhhhhHHHHHHHHHHhh--hhheeeeehhhhhhHHHHH
Confidence 4688899999999999998887777777777 6677777666654443333
No 223
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=65.78 E-value=15 Score=23.66 Aligned_cols=58 Identities=17% Similarity=0.123 Sum_probs=33.3
Q ss_pred EEEcCCCCcchHHHHHHHHHHHHHhhhCCcEEEEEeCCCH-HHHHHHHHHhCCeeeeEEEEcCCC
Q 029880 105 ALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTP-NKAQILAERVGNVFITQVLSLPLE 168 (186)
Q Consensus 105 vffr~~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~d~~-e~~~~f~~~~~~~l~fpvL~Dp~~ 168 (186)
..|...+||+|++-.-.|.+. +..++++-|+.... ....+|.+..+ .-..|+|.+.++
T Consensus 2 ~Ly~~~~s~~~~~~~~~L~~~-----~l~~~~~~v~~~~~~~~~~~~~~~~p-~~~vP~l~~~~~ 60 (74)
T cd03051 2 KLYDSPTAPNPRRVRIFLAEK-----GIDVPLVTVDLAAGEQRSPEFLAKNP-AGTVPVLELDDG 60 (74)
T ss_pred EEEeCCCCcchHHHHHHHHHc-----CCCceEEEeecccCccCCHHHHhhCC-CCCCCEEEeCCC
Confidence 356678999999887776654 22344555554322 22334555554 125799975443
No 224
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=65.05 E-value=12 Score=32.11 Aligned_cols=33 Identities=30% Similarity=0.490 Sum_probs=27.6
Q ss_pred CCeEEEEEEcCCCCcchHHHHHHHHHHHHHhhh
Q 029880 99 EGVAVVALLRHFGCPCCWELASALKESKARFDS 131 (186)
Q Consensus 99 ~g~vvLvffr~~wCp~C~~el~~L~~l~~ef~~ 131 (186)
+|++.|+|.=+-|||+|..+-=.|-....+|-.
T Consensus 57 ~Gk~~v~~igw~gCP~~A~~sW~L~~ALsrfGn 89 (249)
T PF06053_consen 57 NGKPEVIFIGWEGCPYCAAESWALYIALSRFGN 89 (249)
T ss_pred CCeeEEEEEecccCccchhhHHHHHHHHHhcCC
Confidence 689999999999999999988777776666543
No 225
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=64.55 E-value=21 Score=28.14 Aligned_cols=49 Identities=18% Similarity=0.344 Sum_probs=35.6
Q ss_pred eEEEEEEcCCCCcchHHHHHHHHHHHHHhhhCCcEEEEEeCCCHHHHHHHHHHhCCeeeeE
Q 029880 101 VAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKAQILAERVGNVFITQ 161 (186)
Q Consensus 101 ~vvLvffr~~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~d~~e~~~~f~~~~~~~l~fp 161 (186)
..=+++|....|+.|.+.+..| +.+|+.|=.+..++-+.+++ ++| +++.
T Consensus 25 ~~~~~vyksPnCGCC~~w~~~m-------k~~Gf~Vk~~~~~d~~alK~---~~g--Ip~e 73 (149)
T COG3019 25 ATEMVVYKSPNCGCCDEWAQHM-------KANGFEVKVVETDDFLALKR---RLG--IPYE 73 (149)
T ss_pred eeeEEEEeCCCCccHHHHHHHH-------HhCCcEEEEeecCcHHHHHH---hcC--CChh
Confidence 4557788899999999988655 46788888888887666553 356 5543
No 226
>cd02979 PHOX_C FAD-dependent Phenol hydoxylase (PHOX) family, C-terminal TRX-fold domain; composed of proteins similar to PHOX from the aerobic topsoil yeast Trichosporon cutaneum. PHOX is a flavoprotein monooxygenase that catalyzes the hydroxylation of phenol and simple phenol derivatives in the ortho position with the consumption of NADPH and oxygen. This is the first step in the biodegradation and detoxification of phenolic compounds. PHOX contains three domains. The substrate and FAD/NAD(P) binding sites are contained in the first two domains, which adopt a complicated folding pattern. The third or C-terminal domain contains a TRX fold and is involved in dimerization. The functional unit of PHOX is a dimer, although active tetramers of the recombinant enzyme can be isolated when overproduced in bacteria.
Probab=62.92 E-value=17 Score=28.82 Aligned_cols=103 Identities=7% Similarity=0.063 Sum_probs=58.7
Q ss_pred CCCcCCeEEEC-CCCCEEecccccccCCCeEEEEEEcCCCCcchHHHHHHHHHHHHH-------hh------hCCcEEEE
Q 029880 73 GDLLGDFSIFT-AAGEPVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKAR-------FD------SAGVKLIA 138 (186)
Q Consensus 73 G~~aPdf~L~d-~~G~~vsLsdl~~~~~g~vvLvffr~~wCp~C~~el~~L~~l~~e-------f~------~~Gv~vVa 138 (186)
|..+|++.+.. .+|+++.|.+.....++.-+++|--..-++..+..+..|.+.... +. +.=+.++.
T Consensus 1 G~R~~~a~V~r~aD~~p~~L~~~~~adGrfrI~vFagd~~~~~~~~~l~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (167)
T cd02979 1 GRRFPSAPVVRQADALPVHLGHRLPADGRFRIYVFAGDIAPAQQKSRLTQLCDALDSPDSFPLRYTPRGADPDSVFDVVT 80 (167)
T ss_pred CCcCCCceEEEecCCCCHhHhhhccCCCCEEEEEEcCCCCchhHHHHHHHHHHHHcCCcchHhhcCCCCCCCCCcEEEEE
Confidence 66788888775 689999998876543334455554333444555555444443311 10 11256777
Q ss_pred EeCCCHH---------HHHHHHHHhCCeeee-EEEEcCC------CCcccceeec
Q 029880 139 VGVGTPN---------KAQILAERVGNVFIT-QVLSLPL------EVTPSLFKFH 177 (186)
Q Consensus 139 Is~d~~e---------~~~~f~~~~~~~l~f-pvL~Dp~------~~~~~~f~~~ 177 (186)
|...... ..+.+.++++ +.| -++.|.+ +..++.||+.
T Consensus 81 I~~~~~~~~e~~dlP~~~~p~~~~~~--~~~~~v~~d~~~~~~~~~~~~~~~gv~ 133 (167)
T cd02979 81 IHAAPRREIELLDLPAVLRPFGEKKG--WDYEKIYADDDSYHEGHGDAYEKYGID 133 (167)
T ss_pred EecCCccccchhhCcHhhcCCCCccc--cceeeEEecCccccCCcccHHHhhCCC
Confidence 7766432 2233334445 554 4667754 6788888886
No 227
>PF05176 ATP-synt_10: ATP10 protein; InterPro: IPR007849 This entry represents the ATPase assembly factor ATP10 found in mitochondria, which is essential for the assembly of the mitochondrial F1-F0 complex. A yeast nuclear gene (ATP10) encodes a product that is essential for the assembly of a functional mitochondrial ATPase complex. Mutations in ATP10 induce a loss of rutamycin sensitivity in the mitochondrial ATPase, but do not affect the respiratory enzymes. ATP10 has an Mr of 30,293 and its primary structure is not related to any known subunit of the yeast or mammalian mitochondrial ATPase complexes. ATP10 is associated with the mitochondrial membrane. It is suggested that the ATP10 product is not a subunit of the ATPase complex but rather a protein required for the assembly of the F0 sector of the complex [].; GO: 0033615 mitochondrial proton-transporting ATP synthase complex assembly, 0005743 mitochondrial inner membrane
Probab=61.19 E-value=15 Score=31.35 Aligned_cols=72 Identities=19% Similarity=0.165 Sum_probs=43.0
Q ss_pred CCCCCCCCcCCeEEECCCCCEEecccccccCCCeEEEEEEcCCCCcchHHHHHHHHH-HHHHhh-hC--CcEEEEEeCCC
Q 029880 68 FPANVGDLLGDFSIFTAAGEPVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKE-SKARFD-SA--GVKLIAVGVGT 143 (186)
Q Consensus 68 ~~l~~G~~aPdf~L~d~~G~~vsLsdl~~~~~g~vvLvffr~~wCp~C~~el~~L~~-l~~ef~-~~--Gv~vVaIs~d~ 143 (186)
....-.-..|+|...+++|+.+++.+.++ ++..||..|...|= ..++..+.. ...+|. .. .+++|-|+..+
T Consensus 93 ~~~~kAlyFP~l~g~tL~g~~~~~~~~l~--gkvSlV~l~s~~~g---e~~~~sw~~p~~~~~~~~~~~~~q~v~In~~e 167 (252)
T PF05176_consen 93 FKADKALYFPNLQGKTLAGNKVDTTDLLR--GKVSLVCLFSSAWG---EEMVDSWTSPFLEDFLQEPYGRVQIVEINLIE 167 (252)
T ss_pred CcHHhCCcCCCCccccCCCCCcccccccC--CceEEEEEeehHHH---HHHHHHHhhHHHHHHhhCCCCceEEEEEecch
Confidence 33344456899999999999999999884 44444433333332 222222222 333343 23 68999999876
Q ss_pred H
Q 029880 144 P 144 (186)
Q Consensus 144 ~ 144 (186)
.
T Consensus 168 ~ 168 (252)
T PF05176_consen 168 N 168 (252)
T ss_pred H
Confidence 3
No 228
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=60.26 E-value=40 Score=27.81 Aligned_cols=53 Identities=17% Similarity=0.182 Sum_probs=42.7
Q ss_pred HHHHHHHHHHhhhCCcEEEEEeCCCHHHHHHHHHHhCCeeeeEEEEcCCCCcccc
Q 029880 119 ASALKESKARFDSAGVKLIAVGVGTPNKAQILAERVGNVFITQVLSLPLEVTPSL 173 (186)
Q Consensus 119 l~~L~~l~~ef~~~Gv~vVaIs~d~~e~~~~f~~~~~~~l~fpvL~Dp~~~~~~~ 173 (186)
-+...+...+++++|+.++.++......++.+.++.+ +..++++...+.+...
T Consensus 22 ~~~~~~al~~~~~~g~~v~iaTGR~~~~~~~~~~~l~--~~~~~I~~NGa~i~~~ 74 (264)
T COG0561 22 SPETKEALARLREKGVKVVLATGRPLPDVLSILEELG--LDGPLITFNGALIYNG 74 (264)
T ss_pred CHHHHHHHHHHHHCCCEEEEECCCChHHHHHHHHHcC--CCccEEEeCCeEEecC
Confidence 3456666678899999999999989999999999999 8878887766655544
No 229
>PF04278 Tic22: Tic22-like family; InterPro: IPR007378 Chloroplast function requires the import of nuclear encoded proteins from the cytoplasm across the chloroplast double membrane. This is accompished by two protein complexes, the Toc complex located at the outer membrane and the Tic complex loacted at the inner membrane []. The Toc complex recognises specific proteins by a cleavable N-terminal sequence and is primarily responsible for translocation through the outer membrane, while the Tic complex translocates the protein through the inner membrane. This entry represents Tic22, a core member of the Tic complex. It is believed to act as a link between both protein complexes, contacting the translocated protein in the intermembrane space after transport through the Toc complex, and directing it to the Tic complex [].; PDB: 4EV1_A.
Probab=59.72 E-value=22 Score=30.61 Aligned_cols=85 Identities=21% Similarity=0.236 Sum_probs=42.9
Q ss_pred CCcCCeEEECCCCCEEecccccccCCCeEEEEEEcCCCCcchHHHHHHHHHH-HHHhh--hCCcEEEEEeCCCHHHHH-H
Q 029880 74 DLLGDFSIFTAAGEPVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKES-KARFD--SAGVKLIAVGVGTPNKAQ-I 149 (186)
Q Consensus 74 ~~aPdf~L~d~~G~~vsLsdl~~~~~g~vvLvffr~~wCp~C~~el~~L~~l-~~ef~--~~Gv~vVaIs~d~~e~~~-~ 149 (186)
+.+|-|++.|.+|+.+-.++--+ +++.+..+| .+..++..+-+- ..+-. ..+++|+.|+.+..-++. +
T Consensus 73 ~~VPVF~itn~~G~p~l~~~~~~--~~~~v~~~F------~s~~dA~~~L~~lk~~~p~~~~~~kV~pvsL~~vY~l~~~ 144 (274)
T PF04278_consen 73 AGVPVFTITNSQGEPVLVSGPDQ--GGKSVGLFF------FSQQDAEAFLAQLKKSNPELASGAKVVPVSLGKVYQLAQE 144 (274)
T ss_dssp TTSEEEEEE-TT--B-----TTS----SEEEEEE------S-HHHHHHHHHHHHH-SSHHHTT-EEEEEEHHHHHHHHHH
T ss_pred cCceEEEEECCCCCEEEeccCCC--CCceEEEEE------ecHHHHHHHHHHHhhhCccccCceEEEEecHHHHHHHHHH
Confidence 35899999999999987766521 145554554 366666555433 32211 578999999998765542 2
Q ss_pred HH-HHhCCeeeeEEEEcCCC
Q 029880 150 LA-ERVGNVFITQVLSLPLE 168 (186)
Q Consensus 150 f~-~~~~~~l~fpvL~Dp~~ 168 (186)
.. +..+ +.|.++.|+.+
T Consensus 145 ~~~k~~~--~~F~~vP~~~q 162 (274)
T PF04278_consen 145 NKKKPEG--LQFRFVPDPKQ 162 (274)
T ss_dssp TTT-TT---EEEEEE--HHH
T ss_pred hhcCCcC--ceEEEcCCHHH
Confidence 21 3445 88999988653
No 230
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=58.97 E-value=15 Score=23.88 Aligned_cols=54 Identities=19% Similarity=0.072 Sum_probs=29.4
Q ss_pred EEcCCCCcchHHHHHHHHHHHHHhhhCCcEEEEEeCCCHHHHHHHHHHhCCee-eeEEEEcCCC
Q 029880 106 LLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKAQILAERVGNVF-ITQVLSLPLE 168 (186)
Q Consensus 106 ffr~~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~d~~e~~~~f~~~~~~~l-~fpvL~Dp~~ 168 (186)
.|...+||.|++-.-.|. .+|+.+--+..+......+|.+..+ . ..|++-|.+.
T Consensus 3 ly~~~~~~~~~~v~~~l~-------~~gi~~~~~~v~~~~~~~~~~~~~p--~~~vP~l~~~~~ 57 (73)
T cd03059 3 LYSGPDDVYSHRVRIVLA-------EKGVSVEIIDVDPDNPPEDLAELNP--YGTVPTLVDRDL 57 (73)
T ss_pred EEECCCChhHHHHHHHHH-------HcCCccEEEEcCCCCCCHHHHhhCC--CCCCCEEEECCE
Confidence 456778999998876654 3454433333332222234444443 2 4688877553
No 231
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=58.58 E-value=21 Score=24.93 Aligned_cols=39 Identities=26% Similarity=0.342 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHhhhCCcEEEEEeCCCHHHHHHHHHHhC
Q 029880 117 ELASALKESKARFDSAGVKLIAVGVGTPNKAQILAERVG 155 (186)
Q Consensus 117 ~el~~L~~l~~ef~~~Gv~vVaIs~d~~e~~~~f~~~~~ 155 (186)
...+.+.++.+++++.|+.++.++.+..+.++.+.+..+
T Consensus 24 ~~~~~~~~~l~~l~~~g~~i~ivS~~~~~~~~~~~~~~~ 62 (139)
T cd01427 24 ELYPGVKEALKELKEKGIKLALATNKSRREVLELLEELG 62 (139)
T ss_pred CcCcCHHHHHHHHHHCCCeEEEEeCchHHHHHHHHHHcC
Confidence 344567777888888999999999999999999999888
No 232
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=58.55 E-value=32 Score=27.48 Aligned_cols=49 Identities=14% Similarity=0.163 Sum_probs=39.1
Q ss_pred HHHHHHHhhhCCcEEEEEeCCCHHHHHHHHHHhCCeee-eEEEEcCCCCccc
Q 029880 122 LKESKARFDSAGVKLIAVGVGTPNKAQILAERVGNVFI-TQVLSLPLEVTPS 172 (186)
Q Consensus 122 L~~l~~ef~~~Gv~vVaIs~d~~e~~~~f~~~~~~~l~-fpvL~Dp~~~~~~ 172 (186)
..+...+++++|+.++.++......++.+.+..+ +. .|+++.....+..
T Consensus 21 ~~~~l~~l~~~gi~~~i~TgR~~~~~~~~~~~l~--~~~~~~I~~NGa~i~~ 70 (221)
T TIGR02463 21 AAPWLTRLQEAGIPVILCTSKTAAEVEYLQKALG--LTGDPYIAENGAAIHL 70 (221)
T ss_pred HHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcC--CCCCcEEEeCCcEEEc
Confidence 3456666788999999999999999999999999 76 6788776665543
No 233
>PF00875 DNA_photolyase: DNA photolyase from Prosite.; InterPro: IPR006050 DNA photolyases are enzymes that bind to DNA containing pyrimidine dimers: on absorption of visible light, they catalyse dimer splitting into the constituent monomers, a process called photoreactivation []. This is a DNA repair mechanism, repairing mismatched pyrimidine dimers induced by exposure to ultra-violet light []. The precise mechanisms involved in substrate binding, conversion of light energy to the mechanical energy needed to rupture the cyclobutane ring, and subsequent release of the product are uncertain []. Analysis of DNA lyases has revealed the presence of an intrinsic chromophore, all monomers containing a reduced FAD moiety, and, in addition, either a reduced pterin or 8-hydroxy-5-diazaflavin as a second chromophore [, ]. Either chromophore may act as the primary photon acceptor, peak absorptions occurring in the blue region of the spectrum and in the UV-B region, at a wavelength around 290nm []. This domain binds a light harvesting cofactor.; GO: 0003913 DNA photolyase activity, 0006281 DNA repair; PDB: 3UMV_A 2J07_A 1IQU_A 2J09_A 2J08_A 1IQR_A 1DNP_A 3FY4_B 2VTB_A 2J4D_B ....
Probab=57.73 E-value=27 Score=26.94 Aligned_cols=40 Identities=15% Similarity=0.216 Sum_probs=32.8
Q ss_pred HHHHHHHHHHhhhCCcEEEEEeCCCHHHHHHHHHHhCCeeee
Q 029880 119 ASALKESKARFDSAGVKLIAVGVGTPNKAQILAERVGNVFIT 160 (186)
Q Consensus 119 l~~L~~l~~ef~~~Gv~vVaIs~d~~e~~~~f~~~~~~~l~f 160 (186)
...|.++..++++.|+.++.+..+..+.+.+++++++ +.-
T Consensus 52 ~~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~--~~~ 91 (165)
T PF00875_consen 52 LESLADLQESLRKLGIPLLVLRGDPEEVLPELAKEYG--ATA 91 (165)
T ss_dssp HHHHHHHHHHHHHTTS-EEEEESSHHHHHHHHHHHHT--ESE
T ss_pred HHHHHHHHHHHHhcCcceEEEecchHHHHHHHHHhcC--cCe
Confidence 4477888899999999999998888888889999888 553
No 234
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=56.57 E-value=21 Score=26.37 Aligned_cols=37 Identities=24% Similarity=0.488 Sum_probs=30.8
Q ss_pred HHHHHHHHhhhCCcEEEEEeCCCHHHHHHHHHHhCCeee
Q 029880 121 ALKESKARFDSAGVKLIAVGVGTPNKAQILAERVGNVFI 159 (186)
Q Consensus 121 ~L~~l~~ef~~~Gv~vVaIs~d~~e~~~~f~~~~~~~l~ 159 (186)
.+.++..+++++|+.++.++..+.+.+....++++ +.
T Consensus 81 ~~~~~L~~l~~~~~~~~i~Sn~~~~~~~~~l~~~~--~~ 117 (176)
T PF13419_consen 81 GVRELLERLKAKGIPLVIVSNGSRERIERVLERLG--LD 117 (176)
T ss_dssp THHHHHHHHHHTTSEEEEEESSEHHHHHHHHHHTT--HG
T ss_pred hhhhhhhhcccccceeEEeecCCcccccccccccc--cc
Confidence 44556677788999999999999988988999999 65
No 235
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=56.28 E-value=46 Score=26.62 Aligned_cols=49 Identities=16% Similarity=0.070 Sum_probs=36.5
Q ss_pred HHHHHHHHHhhhCCcEEEEEeCCCHHHHHHHHHHhCCeeeeEEEEcCCCCc
Q 029880 120 SALKESKARFDSAGVKLIAVGVGTPNKAQILAERVGNVFITQVLSLPLEVT 170 (186)
Q Consensus 120 ~~L~~l~~ef~~~Gv~vVaIs~d~~e~~~~f~~~~~~~l~fpvL~Dp~~~~ 170 (186)
+...+...+++++|+.++..+.-+...++.+.+..+ ++-++++.....+
T Consensus 23 ~~~~~al~~l~~~G~~~~iaTGR~~~~~~~~~~~l~--~~~~~i~~nGa~i 71 (230)
T PRK01158 23 LKAVEAIRKAEKLGIPVILATGNVLCFARAAAKLIG--TSGPVIAENGGVI 71 (230)
T ss_pred HHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHhC--CCCcEEEecCeEE
Confidence 345566677888999988888778888888889999 7767776554433
No 236
>COG3769 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=55.70 E-value=24 Score=30.14 Aligned_cols=67 Identities=13% Similarity=0.087 Sum_probs=50.7
Q ss_pred cCCeEEECCCCCEEe-cccccccCCCeEEEEEEcCCCCcchHHHHHHHHHHHHHhhhCCcEEEEEeCCCHHHHHHHHHHh
Q 029880 76 LGDFSIFTAAGEPVL-FKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKAQILAERV 154 (186)
Q Consensus 76 aPdf~L~d~~G~~vs-Lsdl~~~~~g~vvLvffr~~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~d~~e~~~~f~~~~ 154 (186)
.|-+-+.|.||..+. -.+. + +. ...+.++++.|+.||..++-+..++..+.+..
T Consensus 6 ~~~lIFtDlD~TLl~~~ye~-~----pA--------------------~pv~~el~d~G~~Vi~~SSKT~aE~~~l~~~l 60 (274)
T COG3769 6 MPLLIFTDLDGTLLPHSYEW-Q----PA--------------------APVLLELKDAGVPVILCSSKTRAEMLYLQKSL 60 (274)
T ss_pred cceEEEEcccCcccCCCCCC-C----cc--------------------chHHHHHHHcCCeEEEeccchHHHHHHHHHhc
Confidence 455667788888877 2222 1 11 23467788999999999999999999999999
Q ss_pred CCeee-eEEEEcCCCC
Q 029880 155 GNVFI-TQVLSLPLEV 169 (186)
Q Consensus 155 ~~~l~-fpvL~Dp~~~ 169 (186)
+ ++ .|+++...+.
T Consensus 61 ~--v~~~p~iaEnG~a 74 (274)
T COG3769 61 G--VQGLPLIAENGAA 74 (274)
T ss_pred C--CCCCceeecCCce
Confidence 9 87 8888876654
No 237
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=55.31 E-value=20 Score=27.97 Aligned_cols=38 Identities=21% Similarity=0.360 Sum_probs=33.2
Q ss_pred HHHHHHHHHHhhhCCcEEEEEeCCCHHHHHHHHHHhCCee
Q 029880 119 ASALKESKARFDSAGVKLIAVGVGTPNKAQILAERVGNVF 158 (186)
Q Consensus 119 l~~L~~l~~ef~~~Gv~vVaIs~d~~e~~~~f~~~~~~~l 158 (186)
.+...+..+++++.|+.+..++.|+...+...+++.| +
T Consensus 129 ~~~~~~~l~~L~~~Gi~~~i~TGD~~~~a~~~~~~lg--i 166 (215)
T PF00702_consen 129 RPGAKEALQELKEAGIKVAILTGDNESTASAIAKQLG--I 166 (215)
T ss_dssp HTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHTT--S
T ss_pred hhhhhhhhhhhhccCcceeeeeccccccccccccccc--c
Confidence 4456777788889999999999999999999999999 7
No 238
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=55.30 E-value=35 Score=24.95 Aligned_cols=39 Identities=18% Similarity=0.271 Sum_probs=30.4
Q ss_pred HHHHHHHHHhhhCCcEEEEEeCCC--------HHHHHHHHHHhCCeeee
Q 029880 120 SALKESKARFDSAGVKLIAVGVGT--------PNKAQILAERVGNVFIT 160 (186)
Q Consensus 120 ~~L~~l~~ef~~~Gv~vVaIs~d~--------~e~~~~f~~~~~~~l~f 160 (186)
+...+....++++|+.++.++... .+.++++.+.++ +.|
T Consensus 28 ~~v~~~l~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~~l~~~~--l~~ 74 (132)
T TIGR01662 28 PEVPDALAELKEAGYKVVIVTNQSGIGRGKFSSGRVARRLEELG--VPI 74 (132)
T ss_pred CCHHHHHHHHHHCCCEEEEEECCccccccHHHHHHHHHHHHHCC--CCE
Confidence 556667778888899999888877 667888888888 553
No 239
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=54.81 E-value=15 Score=28.64 Aligned_cols=32 Identities=16% Similarity=0.445 Sum_probs=25.8
Q ss_pred EEEEcCCCCcchHHHHHHHHHHHHHhhhCCcEE
Q 029880 104 VALLRHFGCPCCWELASALKESKARFDSAGVKL 136 (186)
Q Consensus 104 Lvffr~~wCp~C~~el~~L~~l~~ef~~~Gv~v 136 (186)
|.+|.-..||.|..-.+.|.++..++. .++.|
T Consensus 3 i~~~~D~~cp~c~~~~~~l~~l~~~~~-~~~~v 34 (193)
T cd03025 3 LYYFIDPLCGWCYGFEPLLEKLKEEYG-GGIEV 34 (193)
T ss_pred EEEEECCCCchhhCchHHHHHHHHHhC-CCceE
Confidence 567889999999999999999998883 34443
No 240
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=54.31 E-value=52 Score=27.00 Aligned_cols=47 Identities=15% Similarity=0.217 Sum_probs=35.7
Q ss_pred HHHHHHHhhhCCcEEEEEeCCCHHHHHHHHHHhCCeeeeEEEEcCCCCc
Q 029880 122 LKESKARFDSAGVKLIAVGVGTPNKAQILAERVGNVFITQVLSLPLEVT 170 (186)
Q Consensus 122 L~~l~~ef~~~Gv~vVaIs~d~~e~~~~f~~~~~~~l~fpvL~Dp~~~~ 170 (186)
-.+...+++++|+.++.++..+...++.+.++.+ +..++++.....+
T Consensus 21 ~~~~i~~l~~~G~~~~iaTGR~~~~~~~~~~~~~--~~~~~I~~NGa~i 67 (256)
T TIGR00099 21 TKEALAKLREKGIKVVLATGRPYKEVKNILKELG--LDTPFITANGAAV 67 (256)
T ss_pred HHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcC--CCCCEEEcCCcEE
Confidence 3455667788999999988888888999999999 7766665544433
No 241
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=53.80 E-value=31 Score=27.62 Aligned_cols=79 Identities=15% Similarity=0.114 Sum_probs=52.1
Q ss_pred CCCcCCeEEECCCCCEEeccc--ccccCCC-eEEEEEEcCCCCcchHHHH-HHHHHHHHHhhhCCc--EEEEEeCC----
Q 029880 73 GDLLGDFSIFTAAGEPVLFKD--LWDQNEG-VAVVALLRHFGCPCCWELA-SALKESKARFDSAGV--KLIAVGVG---- 142 (186)
Q Consensus 73 G~~aPdf~L~d~~G~~vsLsd--l~~~~~g-~vvLvffr~~wCp~C~~el-~~L~~l~~ef~~~Gv--~vVaIs~d---- 142 (186)
.--.|++.++|.. .+++.. +.+ .| +.+|+.+=.+-+++=..++ +++.+..+++++.+. .|+.||-+
T Consensus 15 ~l~~P~l~V~si~--~I~~~~~~Lk~--~Gik~li~DkDNTL~~~~~~~i~~~~~~~~~~l~~~~~~~~v~IvSNsaGs~ 90 (168)
T PF09419_consen 15 SLLLPHLYVPSIR--DIDFEANHLKK--KGIKALIFDKDNTLTPPYEDEIPPEYAEWLNELKKQFGKDRVLIVSNSAGSS 90 (168)
T ss_pred cccCCCEEcCChh--hCCcchhhhhh--cCceEEEEcCCCCCCCCCcCcCCHHHHHHHHHHHHHCCCCeEEEEECCCCcc
Confidence 3346777777764 345555 643 34 7888888777665544443 567777777777665 47777765
Q ss_pred ---CHHHHHHHHHHhC
Q 029880 143 ---TPNKAQILAERVG 155 (186)
Q Consensus 143 ---~~e~~~~f~~~~~ 155 (186)
+.++++.+.+.+|
T Consensus 91 ~d~~~~~a~~~~~~lg 106 (168)
T PF09419_consen 91 DDPDGERAEALEKALG 106 (168)
T ss_pred cCccHHHHHHHHHhhC
Confidence 3567888889988
No 242
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=52.76 E-value=35 Score=31.94 Aligned_cols=51 Identities=14% Similarity=0.152 Sum_probs=36.0
Q ss_pred CeEEEEEEcCCCCcchHHHHHHHHHHHHHhhhCCcEEEEEeCCCHHHHHHHHHHhC
Q 029880 100 GVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKAQILAERVG 155 (186)
Q Consensus 100 g~vvLvffr~~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~d~~e~~~~f~~~~~ 155 (186)
+++-|-.|-..+||.|-.-...++++..+.. ++..-.|..... .+++++++
T Consensus 476 ~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~--~i~~~~i~~~~~---~~~~~~~~ 526 (555)
T TIGR03143 476 KPVNIKIGVSLSCTLCPDVVLAAQRIASLNP--NVEAEMIDVSHF---PDLKDEYG 526 (555)
T ss_pred CCeEEEEEECCCCCCcHHHHHHHHHHHHhCC--CceEEEEECccc---HHHHHhCC
Confidence 5777878889999999987777777665533 676666665543 35555777
No 243
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=51.95 E-value=64 Score=25.61 Aligned_cols=44 Identities=20% Similarity=0.197 Sum_probs=33.1
Q ss_pred HHHHHHHhhhCCcEEEEEeCCCHHHHHHHHHHhCCeeeeEEEEcCC
Q 029880 122 LKESKARFDSAGVKLIAVGVGTPNKAQILAERVGNVFITQVLSLPL 167 (186)
Q Consensus 122 L~~l~~ef~~~Gv~vVaIs~d~~e~~~~f~~~~~~~l~fpvL~Dp~ 167 (186)
..+...+++++|+.++..+.-+...++.++++++ ++-++++...
T Consensus 20 ~~~al~~l~~~Gi~~~~aTGR~~~~~~~~~~~l~--~~~~~i~~nG 63 (225)
T TIGR01482 20 ALEAIRKAESVGIPVVLVTGNSVQFARALAKLIG--TPDPVIAENG 63 (225)
T ss_pred HHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHhC--CCCeEEEecC
Confidence 3445566788999988888888888888999998 7666665433
No 244
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=51.59 E-value=53 Score=25.86 Aligned_cols=48 Identities=13% Similarity=0.131 Sum_probs=35.9
Q ss_pred HHHHHHHHhhhCCcEEEEEeCCCHHHHHHHHHHhCCeeeeEEEEcCCCCc
Q 029880 121 ALKESKARFDSAGVKLIAVGVGTPNKAQILAERVGNVFITQVLSLPLEVT 170 (186)
Q Consensus 121 ~L~~l~~ef~~~Gv~vVaIs~d~~e~~~~f~~~~~~~l~fpvL~Dp~~~~ 170 (186)
...+...+++++|+.++..+.-....++.+.++.+ +..++++.....+
T Consensus 19 ~~~~al~~l~~~g~~~~i~TGR~~~~~~~~~~~~~--~~~~~I~~nGa~i 66 (254)
T PF08282_consen 19 ETIEALKELQEKGIKLVIATGRSYSSIKRLLKELG--IDDYFICSNGALI 66 (254)
T ss_dssp HHHHHHHHHHHTTCEEEEECSSTHHHHHHHHHHTT--HCSEEEEGGGTEE
T ss_pred HHHHHHHhhcccceEEEEEccCccccccccccccc--chhhhccccccee
Confidence 44455556777999888888888889999999999 8877776544443
No 245
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=50.71 E-value=29 Score=28.52 Aligned_cols=40 Identities=25% Similarity=0.327 Sum_probs=34.7
Q ss_pred HHHHHHHHHHhhhCCcEEEEEeCCCHHHHHHHHHHhCCeeee
Q 029880 119 ASALKESKARFDSAGVKLIAVGVGTPNKAQILAERVGNVFIT 160 (186)
Q Consensus 119 l~~L~~l~~ef~~~Gv~vVaIs~d~~e~~~~f~~~~~~~l~f 160 (186)
.|...++...++++|.+++.||.+...-++.+++++| +.+
T Consensus 79 ~~ga~elv~~lk~~G~~v~iiSgg~~~lv~~ia~~lg--~d~ 118 (212)
T COG0560 79 TPGAEELVAALKAAGAKVVIISGGFTFLVEPIAERLG--IDY 118 (212)
T ss_pred CccHHHHHHHHHHCCCEEEEEcCChHHHHHHHHHHhC--Cch
Confidence 4566677788899999999999999999999999999 654
No 246
>PRK06184 hypothetical protein; Provisional
Probab=50.55 E-value=30 Score=31.69 Aligned_cols=36 Identities=28% Similarity=0.378 Sum_probs=27.1
Q ss_pred CCCCCCCcCCeEEECCCCCEEecccccccCCCeEEEE
Q 029880 69 PANVGDLLGDFSIFTAAGEPVLFKDLWDQNEGVAVVA 105 (186)
Q Consensus 69 ~l~~G~~aPdf~L~d~~G~~vsLsdl~~~~~g~vvLv 105 (186)
.+.+|..+|+..+.+.+|+.+++.|+... .+.++|.
T Consensus 385 ~~~~G~r~p~~~~~~~~~~~~~l~d~~~~-~~~~ll~ 420 (502)
T PRK06184 385 GLRAGDRAPDAPLLGAAGQPTRLFDLFRG-PHWTLLA 420 (502)
T ss_pred CCCCcCCCCCchhccCCCceeeHHHhhCC-CcEEEEE
Confidence 35789999999998778889999888741 2345554
No 247
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=50.46 E-value=32 Score=23.73 Aligned_cols=55 Identities=13% Similarity=0.124 Sum_probs=30.5
Q ss_pred EEEEcCCCCcchHHHHHHHHHHHHHhhhCCcEEEEEeCCCHHHHHHHHHHhCCeeeeEEEEcC
Q 029880 104 VALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKAQILAERVGNVFITQVLSLP 166 (186)
Q Consensus 104 Lvffr~~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~d~~e~~~~f~~~~~~~l~fpvL~Dp 166 (186)
+..|....||+|++-.-.|.+. +..++++-|..... -..|.+.++ .-..|+|.+.
T Consensus 19 ~~Ly~~~~sp~~~kv~~~L~~~-----gl~~~~~~v~~~~~--~~~~~~~np-~~~vPvL~~~ 73 (89)
T cd03055 19 IRLYSMRFCPYAQRARLVLAAK-----NIPHEVININLKDK--PDWFLEKNP-QGKVPALEID 73 (89)
T ss_pred EEEEeCCCCchHHHHHHHHHHc-----CCCCeEEEeCCCCC--cHHHHhhCC-CCCcCEEEEC
Confidence 3444567799999776555543 22244555554332 133554444 1257999876
No 248
>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain. ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=50.26 E-value=75 Score=21.27 Aligned_cols=49 Identities=16% Similarity=0.029 Sum_probs=35.3
Q ss_pred HHHHHHHHHHhhhCCcEEEEE-eCCCHHHHHHHHHHhCCeeeeEEEEcCCCC
Q 029880 119 ASALKESKARFDSAGVKLIAV-GVGTPNKAQILAERVGNVFITQVLSLPLEV 169 (186)
Q Consensus 119 l~~L~~l~~ef~~~Gv~vVaI-s~d~~e~~~~f~~~~~~~l~fpvL~Dp~~~ 169 (186)
.....++..+++..|+.+..- ...+.....+++++.| ++|-++.+.+..
T Consensus 14 ~~~a~~~~~~Lr~~g~~v~~d~~~~~~~~~~~~a~~~g--~~~~iiig~~e~ 63 (91)
T cd00860 14 LDYAKEVAKKLSDAGIRVEVDLRNEKLGKKIREAQLQK--IPYILVVGDKEV 63 (91)
T ss_pred HHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHcC--CCEEEEECcchh
Confidence 344556778888899987663 3345566777889999 999888876543
No 249
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=50.24 E-value=57 Score=28.71 Aligned_cols=43 Identities=12% Similarity=0.168 Sum_probs=36.6
Q ss_pred HHHHHHHHHhhhCCcEEEEEeCCCHHHHHHHHHHhCCeee--eEEEE
Q 029880 120 SALKESKARFDSAGVKLIAVGVGTPNKAQILAERVGNVFI--TQVLS 164 (186)
Q Consensus 120 ~~L~~l~~ef~~~Gv~vVaIs~d~~e~~~~f~~~~~~~l~--fpvL~ 164 (186)
|...+..++++++|+.+..++.+..+.+....++.| +. |.++.
T Consensus 149 PgV~EaL~~LkekGikLaIaTS~~Re~v~~~L~~lG--Ld~YFdvII 193 (301)
T TIGR01684 149 PRIYDSLTELKKRGCILVLWSYGDRDHVVESMRKVK--LDRYFDIII 193 (301)
T ss_pred HHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHcC--CCcccCEEE
Confidence 677888999999999999999999999989999999 65 55544
No 250
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=49.27 E-value=17 Score=26.70 Aligned_cols=55 Identities=18% Similarity=0.209 Sum_probs=33.4
Q ss_pred EEEcCCCCcchHHHHHHHHHHHHHhhhCCcEEEEEeC--C--CHHHHHHHHHHhCCeeeeEEEEcCCC
Q 029880 105 ALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGV--G--TPNKAQILAERVGNVFITQVLSLPLE 168 (186)
Q Consensus 105 vffr~~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~--d--~~e~~~~f~~~~~~~l~fpvL~Dp~~ 168 (186)
.+|-...|..|++.+..|. ++|+.+..+.. + +.+++..+.+..| ....-+....+
T Consensus 2 ~iy~~~~C~t~rkA~~~L~-------~~~i~~~~~di~~~~~t~~el~~~l~~~~--~~~~~lin~~~ 60 (112)
T cd03034 2 TIYHNPRCSKSRNALALLE-------EAGIEPEIVEYLKTPPTAAELRELLAKLG--ISPRDLLRTKE 60 (112)
T ss_pred EEEECCCCHHHHHHHHHHH-------HCCCCeEEEecccCCcCHHHHHHHHHHcC--CCHHHHHhcCC
Confidence 4666889999998765444 55665555553 2 3566777777776 44433333333
No 251
>PF12017 Tnp_P_element: Transposase protein; InterPro: IPR021896 Protein in this family are transposases found in insects. This region is about 230 amino acids in length and is found associated with PF05485 from PFAM.
Probab=49.12 E-value=55 Score=27.71 Aligned_cols=37 Identities=19% Similarity=0.258 Sum_probs=30.4
Q ss_pred HHHHHHHHHHhhhCCcEEEEEeCCCHHHHHHHHHHhC
Q 029880 119 ASALKESKARFDSAGVKLIAVGVGTPNKAQILAERVG 155 (186)
Q Consensus 119 l~~L~~l~~ef~~~Gv~vVaIs~d~~e~~~~f~~~~~ 155 (186)
...|.++..++.+.|+.||||.+|-.........++|
T Consensus 195 ~~~l~~iI~~l~~~g~~VvAivsD~g~~N~~~w~~Lg 231 (236)
T PF12017_consen 195 ADILKNIIEKLHEIGYNVVAIVSDMGSNNISLWRELG 231 (236)
T ss_pred HHHHHHHHHHHHHCCCEEEEEECCCCcchHHHHHHcC
Confidence 5566788889999999999999997766666667777
No 252
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=48.42 E-value=76 Score=26.30 Aligned_cols=47 Identities=9% Similarity=-0.044 Sum_probs=34.8
Q ss_pred HHHHHHHhhhCCcEEEEEeCCCHHHHHHHHHHhCCeeeeEEEEcCCCCc
Q 029880 122 LKESKARFDSAGVKLIAVGVGTPNKAQILAERVGNVFITQVLSLPLEVT 170 (186)
Q Consensus 122 L~~l~~ef~~~Gv~vVaIs~d~~e~~~~f~~~~~~~l~fpvL~Dp~~~~ 170 (186)
-.+...+++++|+.|+..+.-....++.+.++.+ +..++++.....+
T Consensus 24 ~~~ai~~l~~~G~~~~iaTGR~~~~~~~~~~~l~--~~~~~I~~NGa~I 70 (272)
T PRK15126 24 TLSTLARLRERDITLTFATGRHVLEMQHILGALS--LDAYLITGNGTRV 70 (272)
T ss_pred HHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHcC--CCCcEEecCCcEE
Confidence 3455566788999888888778888999999999 7766665444333
No 253
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=47.37 E-value=21 Score=25.69 Aligned_cols=53 Identities=19% Similarity=0.130 Sum_probs=32.7
Q ss_pred CCCcchHHHHHHHHHHHHHhhhCCcEEEEEeCCCHHHHHHHHHHhCCee-eeEEEEcCCCCcc
Q 029880 110 FGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKAQILAERVGNVF-ITQVLSLPLEVTP 171 (186)
Q Consensus 110 ~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~d~~e~~~~f~~~~~~~l-~fpvL~Dp~~~~~ 171 (186)
.+||+|++-.-.|.+. +..++++-|..++.. ..|.+-+. . ..|+|.|.+..+.
T Consensus 20 g~cpf~~rvrl~L~eK-----gi~ye~~~vd~~~~p--~~~~~~nP--~g~vPvL~~~~~~i~ 73 (91)
T cd03061 20 GNCPFCQRLFMVLWLK-----GVVFNVTTVDMKRKP--EDLKDLAP--GTQPPFLLYNGEVKT 73 (91)
T ss_pred CCChhHHHHHHHHHHC-----CCceEEEEeCCCCCC--HHHHHhCC--CCCCCEEEECCEEec
Confidence 5899999988777654 222445666655422 33555554 3 4789998665443
No 254
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=47.20 E-value=53 Score=24.12 Aligned_cols=44 Identities=14% Similarity=0.263 Sum_probs=30.9
Q ss_pred EEEcCCCCcchHHHHHHHHHHHHHhhhCCcEEEEEeC--C--CHHHHHHHHHHhC
Q 029880 105 ALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGV--G--TPNKAQILAERVG 155 (186)
Q Consensus 105 vffr~~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~--d--~~e~~~~f~~~~~ 155 (186)
.+|-...|..|++....|. ++|+.+..+.. + +.++++.+.+..|
T Consensus 2 ~iy~~~~C~t~rkA~~~L~-------~~~i~~~~~di~~~p~t~~el~~~l~~~g 49 (114)
T TIGR00014 2 TIYHNPRCSKSRNTLALLE-------DKGIEPEVVKYLKNPPTKSELEAIFAKLG 49 (114)
T ss_pred EEEECCCCHHHHHHHHHHH-------HCCCCeEEEeccCCCcCHHHHHHHHHHcC
Confidence 4677889999998775555 45666555553 2 3567888888877
No 255
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=46.83 E-value=69 Score=26.25 Aligned_cols=48 Identities=19% Similarity=0.039 Sum_probs=35.4
Q ss_pred HHHHHHHhhhCCcEEEEEeCCCHHHHHHHHHHhCCeeeeEEEEcCCCCcc
Q 029880 122 LKESKARFDSAGVKLIAVGVGTPNKAQILAERVGNVFITQVLSLPLEVTP 171 (186)
Q Consensus 122 L~~l~~ef~~~Gv~vVaIs~d~~e~~~~f~~~~~~~l~fpvL~Dp~~~~~ 171 (186)
-.+...+++++|+.|+..+.-....+..+.++.+ +..|+++.....+.
T Consensus 25 ~~~ai~~~~~~G~~~~iaTGR~~~~~~~~~~~l~--~~~~~I~~NGa~i~ 72 (272)
T PRK10530 25 SLEALARAREAGYKVIIVTGRHHVAIHPFYQALA--LDTPAICCNGTYLY 72 (272)
T ss_pred HHHHHHHHHHCCCEEEEEcCCChHHHHHHHHhcC--CCCCEEEcCCcEEE
Confidence 3456667888999888777777778888999999 77677765554443
No 256
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=46.72 E-value=65 Score=28.39 Aligned_cols=47 Identities=9% Similarity=0.121 Sum_probs=37.9
Q ss_pred HHHHHHhhhCCcEEEEEeCCCHHHHHHHHHHhCCeeeeEEEEcCCCCcc
Q 029880 123 KESKARFDSAGVKLIAVGVGTPNKAQILAERVGNVFITQVLSLPLEVTP 171 (186)
Q Consensus 123 ~~l~~ef~~~Gv~vVaIs~d~~e~~~~f~~~~~~~l~fpvL~Dp~~~~~ 171 (186)
.+...+++++|+.||..+.-+..++..++++.+ +..|+++.....+.
T Consensus 24 ~~aL~~Lk~~GI~vVlaTGRt~~ev~~l~~~Lg--l~~p~I~eNGA~I~ 70 (302)
T PRK12702 24 RQALAALERRSIPLVLYSLRTRAQLEHLCRQLR--LEHPFICEDGSAIY 70 (302)
T ss_pred HHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhC--CCCeEEEeCCcEEE
Confidence 445667788999999999999999999999999 88788876555443
No 257
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=46.18 E-value=27 Score=26.85 Aligned_cols=36 Identities=22% Similarity=0.316 Sum_probs=30.7
Q ss_pred HHHHHHhhhCCcEEEEEeCCCHHHHHHHHHHhCCeeee
Q 029880 123 KESKARFDSAGVKLIAVGVGTPNKAQILAERVGNVFIT 160 (186)
Q Consensus 123 ~~l~~ef~~~Gv~vVaIs~d~~e~~~~f~~~~~~~l~f 160 (186)
.++..++++.|+.++.||.+....++.+++..+ ++.
T Consensus 95 ~e~i~~~~~~~~~v~IvS~~~~~~i~~~~~~~~--i~~ 130 (192)
T PF12710_consen 95 MELIRELKDNGIKVVIVSGSPDEIIEPIAERLG--IDD 130 (192)
T ss_dssp HHHHHHHHHTTSEEEEEEEEEHHHHHHHHHHTT--SSE
T ss_pred HHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcC--CCc
Confidence 366677788999999999998889999999999 653
No 258
>cd01453 vWA_transcription_factor_IIH_type Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme. Orthologues of these genes are found in all completed eukaryotic genomes and all these proteins contain a VWA domain. The p44 subunit of TFIIH functions as a DNA helicase in RNA polymerase II transcription initiation and DNA repair, and its transcriptional activity is dependent on its C-terminal Zn-binding domains. The function of the vWA domain is unclear, but may be involved in complex assembly. The MIDAS motif is not conserved in this sub-group.
Probab=46.03 E-value=1e+02 Score=24.43 Aligned_cols=43 Identities=7% Similarity=0.135 Sum_probs=31.7
Q ss_pred HHHHHHhhhCCcEEEEEeCCC-HHHHHHHHHHhCCeeeeEEEEcCC
Q 029880 123 KESKARFDSAGVKLIAVGVGT-PNKAQILAERVGNVFITQVLSLPL 167 (186)
Q Consensus 123 ~~l~~ef~~~Gv~vVaIs~d~-~e~~~~f~~~~~~~l~fpvL~Dp~ 167 (186)
.++.+++++.|++|..|+.++ .+.+++.++..| =.|-...|++
T Consensus 126 ~~~~~~l~~~~I~v~~IgiG~~~~~L~~ia~~tg--G~~~~~~~~~ 169 (183)
T cd01453 126 YETIDKLKKENIRVSVIGLSAEMHICKEICKATN--GTYKVILDET 169 (183)
T ss_pred HHHHHHHHHcCcEEEEEEechHHHHHHHHHHHhC--CeeEeeCCHH
Confidence 455677888899987777775 456999999988 6665556654
No 259
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=45.90 E-value=85 Score=24.50 Aligned_cols=38 Identities=24% Similarity=0.220 Sum_probs=22.9
Q ss_pred CCcchHHHHHHHHHHHHHhhhCCcEEEEEeCCCHH-HHHHHHHHhC
Q 029880 111 GCPCCWELASALKESKARFDSAGVKLIAVGVGTPN-KAQILAERVG 155 (186)
Q Consensus 111 wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~d~~e-~~~~f~~~~~ 155 (186)
+||.|.+--..| ++.||.+.-+..+... ..+++.+..+
T Consensus 15 t~~~C~~ak~iL-------~~~~V~~~e~DVs~~~~~~~EL~~~~g 53 (147)
T cd03031 15 TFEDCNNVRAIL-------ESFRVKFDERDVSMDSGFREELRELLG 53 (147)
T ss_pred cChhHHHHHHHH-------HHCCCcEEEEECCCCHHHHHHHHHHhC
Confidence 999997655444 4557777777776433 3444444444
No 260
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=45.87 E-value=15 Score=31.16 Aligned_cols=45 Identities=13% Similarity=0.211 Sum_probs=38.1
Q ss_pred CCeEEEEEEcCCCCcchHHHHHHHHHHHHHhhhCCcEEEEEeCCC
Q 029880 99 EGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGT 143 (186)
Q Consensus 99 ~g~vvLvffr~~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~d~ 143 (186)
+....||-|.+.|-|-|+...|-+.++..+|...+..+=-|..|-
T Consensus 143 k~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiGr 187 (265)
T KOG0914|consen 143 KRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIGR 187 (265)
T ss_pred CceEEEEEEEeecChhhcccccccHHHHHHhCCCCCcccceeecc
Confidence 458889999999999999999999999999988877665555553
No 261
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=45.71 E-value=1.1e+02 Score=28.40 Aligned_cols=64 Identities=27% Similarity=0.429 Sum_probs=37.0
Q ss_pred CCCCCCcCCeEEECCCCCEEecccccccCCCeEEEEEEcCCCCcchHHHHHHHHHHHHHhhhCCcEEEEEeCC
Q 029880 70 ANVGDLLGDFSIFTAAGEPVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVG 142 (186)
Q Consensus 70 l~~G~~aPdf~L~d~~G~~vsLsdl~~~~~g~vvLvffr~~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~d 142 (186)
..+|+.+|+..+.+.+|....+.++.+ .+.++|.+ ++.. ...+. .+....++..|..+|.+...
T Consensus 411 ~~~G~~~p~~~~~~~~~~~~~~d~~~~--~~~~ll~~----~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~ 474 (538)
T PRK06183 411 SPVGTLFPQPRVELGGGDRGLLDDVLG--PGFAVLGW----GCDP-LAGLS--DEQRARWRALGARFVQVVPA 474 (538)
T ss_pred CCcccCcCCCeeEcCCCCcccchhccC--CceEEEEe----cCCc-hhcCC--HHHHHHHHHcCCeEEEEecc
Confidence 468999999999877766656666753 34555543 2221 11111 11223356678888877543
No 262
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=45.24 E-value=22 Score=26.73 Aligned_cols=63 Identities=10% Similarity=0.155 Sum_probs=41.9
Q ss_pred EEEEcCCCCcchHHHHHHHHHHHHHhhhCCcEEEEE--eCC--CHHHHHHHHHHhCCeeeeEEEEcCCCCccccee
Q 029880 104 VALLRHFGCPCCWELASALKESKARFDSAGVKLIAV--GVG--TPNKAQILAERVGNVFITQVLSLPLEVTPSLFK 175 (186)
Q Consensus 104 Lvffr~~wCp~C~~el~~L~~l~~ef~~~Gv~vVaI--s~d--~~e~~~~f~~~~~~~l~fpvL~Dp~~~~~~~f~ 175 (186)
|.+|....|.-|+.-... ++++|+..-.| ..+ +.+.++++.+..| ..+.-+....+.+.+..+
T Consensus 3 itiy~~p~C~t~rka~~~-------L~~~gi~~~~~~y~~~~~s~~eL~~~l~~~g--~~~~~li~t~~~~~r~L~ 69 (117)
T COG1393 3 ITIYGNPNCSTCRKALAW-------LEEHGIEYTFIDYLKTPPSREELKKILSKLG--DGVEELINTRGTTYRELN 69 (117)
T ss_pred EEEEeCCCChHHHHHHHH-------HHHcCCCcEEEEeecCCCCHHHHHHHHHHcC--ccHHHHHHhccchHHHcC
Confidence 567888899999877654 45667655444 333 4577888888888 666656555555555544
No 263
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=45.19 E-value=89 Score=23.01 Aligned_cols=46 Identities=24% Similarity=0.372 Sum_probs=25.5
Q ss_pred eEEEEEEcCCCCcchHHHHHHHHHHHHHhhhCCcEEEEEeCCC---HHHHHHHHHHh
Q 029880 101 VAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGT---PNKAQILAERV 154 (186)
Q Consensus 101 ~vvLvffr~~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~d~---~e~~~~f~~~~ 154 (186)
..||+|- .+|||+|.. +..| .. +.|+....|-.|. ..+++++..+.
T Consensus 14 ~~VVifS-Ks~C~~c~~-~k~l---l~---~~~v~~~vvELD~~~~g~eiq~~l~~~ 62 (104)
T KOG1752|consen 14 NPVVIFS-KSSCPYCHR-AKEL---LS---DLGVNPKVVELDEDEDGSEIQKALKKL 62 (104)
T ss_pred CCEEEEE-CCcCchHHH-HHHH---HH---hCCCCCEEEEccCCCCcHHHHHHHHHh
Confidence 4555555 499999998 3332 22 2555544444443 33566655544
No 264
>PF05116 S6PP: Sucrose-6F-phosphate phosphohydrolase; InterPro: IPR006380 This family of sequences represent sucrose phosphate phosphohydrolase (SPP) from plants and cyanobacteria []. SPP is a member of the Class IIB subfamily of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. SPP catalyzes the final step in the biosynthesis of sucrose, a critically important molecule for plants. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.; PDB: 1TJ5_A 2B1Q_A 1TJ4_A 1S2O_A 1U2T_A 2D2V_A 1TJ3_A 1U2S_A 2B1R_A 3GYG_B ....
Probab=45.15 E-value=1.3e+02 Score=25.02 Aligned_cols=67 Identities=9% Similarity=-0.113 Sum_probs=44.3
Q ss_pred EEEEcCCCCcchHHHHHHHHHHHHHhhhCCcEEEEEeCCCHHHHHHHHHHhCCeeeeE--EEEcCCCCccc
Q 029880 104 VALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKAQILAERVGNVFITQ--VLSLPLEVTPS 172 (186)
Q Consensus 104 Lvffr~~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~d~~e~~~~f~~~~~~~l~fp--vL~Dp~~~~~~ 172 (186)
+..+=+|....+...+..|.++.......++.++.++.-+.+.+++..++.+ ++.| +++|-...+..
T Consensus 6 ~sDlD~Tl~~~~~~~~~~l~~~l~~~~~~~~~~v~~TGRs~~~~~~~~~~~~--l~~Pd~~I~svGt~I~~ 74 (247)
T PF05116_consen 6 ASDLDGTLIDGDDEALARLEELLEQQARPEILFVYVTGRSLESVLRLLREYN--LPQPDYIITSVGTEIYY 74 (247)
T ss_dssp EEETBTTTBHCHHHHHHHHHHHHHHHHCCGEEEEEE-SS-HHHHHHHHHHCT---EE-SEEEETTTTEEEE
T ss_pred EEECCCCCcCCCHHHHHHHHHHHHHhhCCCceEEEECCCCHHHHHHHHHhCC--CCCCCEEEecCCeEEEE
Confidence 3333344446677777888887774556678888888888999999999999 7766 67776655443
No 265
>KOG1615 consensus Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=45.06 E-value=53 Score=27.54 Aligned_cols=49 Identities=16% Similarity=0.215 Sum_probs=39.1
Q ss_pred HHHHHHHHHhhhCCcEEEEEeCCCHHHHHHHHHHhCCeeee------EEEEcCCCCc
Q 029880 120 SALKESKARFDSAGVKLIAVGVGTPNKAQILAERVGNVFIT------QVLSLPLEVT 170 (186)
Q Consensus 120 ~~L~~l~~ef~~~Gv~vVaIs~d~~e~~~~f~~~~~~~l~f------pvL~Dp~~~~ 170 (186)
|.+.++...++++|++|..||.+=...+.-.++++| +++ -++.|.++..
T Consensus 91 ~Gi~eLv~~L~~~~~~v~liSGGF~~~i~~Va~~Lg--i~~~n~yAN~l~fd~~Gk~ 145 (227)
T KOG1615|consen 91 PGIRELVSRLHARGTQVYLISGGFRQLIEPVAEQLG--IPKSNIYANELLFDKDGKY 145 (227)
T ss_pred CCHHHHHHHHHHcCCeEEEEcCChHHHHHHHHHHhC--CcHhhhhhheeeeccCCcc
Confidence 456777888999999999999998888877788999 777 5566666643
No 266
>PHA03398 viral phosphatase superfamily protein; Provisional
Probab=44.84 E-value=74 Score=28.04 Aligned_cols=44 Identities=9% Similarity=0.104 Sum_probs=36.4
Q ss_pred HHHHHHHHHHhhhCCcEEEEEeCCCHHHHHHHHHHhCCeee--eEEEE
Q 029880 119 ASALKESKARFDSAGVKLIAVGVGTPNKAQILAERVGNVFI--TQVLS 164 (186)
Q Consensus 119 l~~L~~l~~ef~~~Gv~vVaIs~d~~e~~~~f~~~~~~~l~--fpvL~ 164 (186)
.|...+...+++++|+.+..++.+..+.+....+..| +. |.++.
T Consensus 150 dp~V~EtL~eLkekGikLaIvTNg~Re~v~~~Le~lg--L~~yFDvII 195 (303)
T PHA03398 150 DPFVYDSLDELKERGCVLVLWSYGNREHVVHSLKETK--LEGYFDIII 195 (303)
T ss_pred ChhHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHcC--CCccccEEE
Confidence 3677888899999999999999998888999999999 64 55444
No 267
>PRK05778 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Validated
Probab=44.56 E-value=18 Score=31.60 Aligned_cols=24 Identities=17% Similarity=0.288 Sum_probs=14.6
Q ss_pred cCCCCcchHHHHHHHHHHHHHhhhC
Q 029880 108 RHFGCPCCWELASALKESKARFDSA 132 (186)
Q Consensus 108 r~~wCp~C~~el~~L~~l~~ef~~~ 132 (186)
.++|||.|-.-. -++.+...+++.
T Consensus 17 ~~~~CpGCg~~~-i~~~i~~al~~l 40 (301)
T PRK05778 17 PTTWCPGCGNFG-ILNAIIQALAEL 40 (301)
T ss_pred CCCCCCCCCChH-HHHHHHHHHHHh
Confidence 578999997544 444444444443
No 268
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=43.20 E-value=28 Score=22.57 Aligned_cols=56 Identities=14% Similarity=-0.009 Sum_probs=32.8
Q ss_pred EEcCCCCcchHHHHHHHHHHHHHhhhCCcEEEEEeCCCHH-HHHHHHHHhCCee-eeEEEEcCCC
Q 029880 106 LLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPN-KAQILAERVGNVF-ITQVLSLPLE 168 (186)
Q Consensus 106 ffr~~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~d~~e-~~~~f~~~~~~~l-~fpvL~Dp~~ 168 (186)
.|...+||.|++-.-.|.+. +..++++-|.....+ ...+|.+.+. . ..|+|.|.+.
T Consensus 3 Ly~~~~~~~~~~v~~~l~~~-----gi~~e~~~i~~~~~~~~~~~~~~~~p--~~~vP~l~~~~~ 60 (74)
T cd03045 3 LYYLPGSPPCRAVLLTAKAL-----GLELNLKEVNLMKGEHLKPEFLKLNP--QHTVPTLVDNGF 60 (74)
T ss_pred EEeCCCCCcHHHHHHHHHHc-----CCCCEEEEecCccCCcCCHHHHhhCc--CCCCCEEEECCE
Confidence 56678999999666555543 223455555543322 2345655554 3 5789987643
No 269
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=43.11 E-value=48 Score=25.14 Aligned_cols=36 Identities=19% Similarity=0.284 Sum_probs=30.9
Q ss_pred HHHHHHHHHhhhCCcEEEEEeCCCHHHHHHHHHHhC
Q 029880 120 SALKESKARFDSAGVKLIAVGVGTPNKAQILAERVG 155 (186)
Q Consensus 120 ~~L~~l~~ef~~~Gv~vVaIs~d~~e~~~~f~~~~~ 155 (186)
+.+.++.+.+++.|+.++.||.+....++.++++++
T Consensus 76 ~g~~~~l~~l~~~g~~~~ivS~~~~~~i~~~~~~~g 111 (177)
T TIGR01488 76 PGARELISWLKERGIDTVIVSGGFDFFVEPVAEKLG 111 (177)
T ss_pred cCHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcC
Confidence 456777788889999999999998888999999888
No 270
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=43.03 E-value=41 Score=32.23 Aligned_cols=110 Identities=15% Similarity=0.041 Sum_probs=65.0
Q ss_pred CCCCCCCCcCCeEEEC-CCCCEEecccccccCCCeEEEEEEcCCCCcchHHHHHHHHHHHH--------HhhhCC-----
Q 029880 68 FPANVGDLLGDFSIFT-AAGEPVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKA--------RFDSAG----- 133 (186)
Q Consensus 68 ~~l~~G~~aPdf~L~d-~~G~~vsLsdl~~~~~g~vvLvffr~~wCp~C~~el~~L~~l~~--------ef~~~G----- 133 (186)
..+.+|..+|+..+.. .+|+++.|.+.....++..+|+|--..-.+.....+..+.+... .|...+
T Consensus 461 ~~~~~G~r~~~~~v~~~~d~~~~~l~~~~~~~g~~~l~~f~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~ 540 (634)
T PRK08294 461 TGFPIGKRFHSAPVIRLADAKPVHLGHAATADGRWRIYAFADAADPAGPGSALDALCEFLAESPDSPLRRFTPSGADIDA 540 (634)
T ss_pred cCCCCceeCCCCceeeccCCCchhHhhhcccCCCEEEEEEcCCCCcchhHHHHHHHHHHHhhCccchHhhcCCCCCCCCc
Confidence 4588999999998886 57888888765532234555555433444566666665555441 122222
Q ss_pred -cEEEEEeCCCH---------HHHHHHHHHhCCee-ee-EEEEcC--CCCcccceeeceE
Q 029880 134 -VKLIAVGVGTP---------NKAQILAERVGNVF-IT-QVLSLP--LEVTPSLFKFHVT 179 (186)
Q Consensus 134 -v~vVaIs~d~~---------e~~~~f~~~~~~~l-~f-pvL~Dp--~~~~~~~f~~~~~ 179 (186)
+.++.|..... +..+.+...++ + .| -++.|. ....+..|||+..
T Consensus 541 ~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~gi~~~ 598 (634)
T PRK08294 541 VIDVRAIFQQPHRELDLEDVPALLLPRKGRFG--LTDYEKVFCADLSGADIFDLRGIDRD 598 (634)
T ss_pred EEEEEEEecCCCCccchhhCcHhhCCcccccC--ccchhheecCCCchhhHHHhhCCCCC
Confidence 56777766532 23444555656 5 44 355652 2457788887654
No 271
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=42.76 E-value=67 Score=25.07 Aligned_cols=36 Identities=14% Similarity=0.179 Sum_probs=29.0
Q ss_pred HHHHHHHHHhhhCCcEEEEEeCCCHHHHHHHHHHhC
Q 029880 120 SALKESKARFDSAGVKLIAVGVGTPNKAQILAERVG 155 (186)
Q Consensus 120 ~~L~~l~~ef~~~Gv~vVaIs~d~~e~~~~f~~~~~ 155 (186)
+...+..+.++++|..++.|+.+....++.+++.++
T Consensus 90 ~~~~~~l~~l~~~g~~v~ivS~s~~~~v~~~~~~lg 125 (202)
T TIGR01490 90 PEARDLIRWHKAEGHTIVLVSASLTILVKPLARILG 125 (202)
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHcC
Confidence 344555566788999999999888888999999988
No 272
>PF04800 ETC_C1_NDUFA4: ETC complex I subunit conserved region; InterPro: IPR006885 This entry represents prokaryotic NADH-ubiquinone oxidoreductase subunits (1.6.5.3 from EC, 1.6.99.3 from EC) from complex I of the electron transport chain initially identified in Neurospora crassa as a 21 kDa protein [].; GO: 0016651 oxidoreductase activity, acting on NADH or NADPH, 0022900 electron transport chain, 0005743 mitochondrial inner membrane; PDB: 2JYA_A 2LJU_A.
Probab=42.45 E-value=35 Score=25.21 Aligned_cols=38 Identities=18% Similarity=0.177 Sum_probs=22.5
Q ss_pred EEEeCCCHHHHHHHHHHhCCeeeeEEEEcCCC-Ccccceee
Q 029880 137 IAVGVGTPNKAQILAERVGNVFITQVLSLPLE-VTPSLFKF 176 (186)
Q Consensus 137 VaIs~d~~e~~~~f~~~~~~~l~fpvL~Dp~~-~~~~~f~~ 176 (186)
|.+.-++.|.+.+||+++| +.|.|.....+ ..+..|+=
T Consensus 51 v~l~F~skE~Ai~yaer~G--~~Y~V~~p~~r~~~~ksY~d 89 (101)
T PF04800_consen 51 VRLKFDSKEDAIAYAERNG--WDYEVEEPKKRKRRPKSYAD 89 (101)
T ss_dssp CEEEESSHHHHHHHHHHCT---EEEEE-STT----------
T ss_pred eEeeeCCHHHHHHHHHHcC--CeEEEeCCCCCcCCcccHHH
Confidence 4566788999999999999 99988865543 23334443
No 273
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=41.66 E-value=87 Score=25.64 Aligned_cols=47 Identities=13% Similarity=0.169 Sum_probs=36.0
Q ss_pred HHHHHHHHhhhCCcEEEEEeCCCHHHHHHHHHHhCCeeeeEEEEcCCCC
Q 029880 121 ALKESKARFDSAGVKLIAVGVGTPNKAQILAERVGNVFITQVLSLPLEV 169 (186)
Q Consensus 121 ~L~~l~~ef~~~Gv~vVaIs~d~~e~~~~f~~~~~~~l~fpvL~Dp~~~ 169 (186)
.-.+..++++++|+.++.++.-+...+..+.++.+ +.-++++-..+.
T Consensus 19 ~~~~ai~~l~~~G~~~vi~TgR~~~~~~~~~~~lg--~~~~~I~~NGa~ 65 (225)
T TIGR02461 19 PAREALEELKDLGFPIVFVSSKTRAEQEYYREELG--VEPPFIVENGGA 65 (225)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcC--CCCcEEEcCCcE
Confidence 34556667888999999998888888999999999 765676644443
No 274
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=41.53 E-value=82 Score=23.27 Aligned_cols=45 Identities=13% Similarity=0.180 Sum_probs=28.3
Q ss_pred EEEEcCCCCcchHHHHHHHHHHHHHhhhCCcEEEEEeC--C--CHHHHHHHHHHhC
Q 029880 104 VALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGV--G--TPNKAQILAERVG 155 (186)
Q Consensus 104 Lvffr~~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~--d--~~e~~~~f~~~~~ 155 (186)
|.+|-...|..|++-...|. ++|+.+-.+.. + +.++++.+.++.|
T Consensus 2 i~iy~~p~C~~crkA~~~L~-------~~gi~~~~~d~~~~p~s~~eL~~~l~~~g 50 (113)
T cd03033 2 IIFYEKPGCANNARQKALLE-------AAGHEVEVRDLLTEPWTAETLRPFFGDLP 50 (113)
T ss_pred EEEEECCCCHHHHHHHHHHH-------HcCCCcEEeehhcCCCCHHHHHHHHHHcC
Confidence 35677889999997665444 45555444443 2 3456777776655
No 275
>cd01821 Rhamnogalacturan_acetylesterase_like Rhamnogalacturan_acetylesterase_like subgroup of SGNH-hydrolases. Rhamnogalacturan acetylesterase removes acetyl esters from rhamnogalacturonan substrates, and renders them susceptible to degradation by rhamnogalacturonases. Rhamnogalacturonans are highly branched regions in pectic polysaccharides, consisting of repeating -(1,2)-L-Rha-(1,4)-D-GalUA disaccharide units, with many rhamnose residues substituted by neutral oligosaccharides such as arabinans, galactans and arabinogalactans. Extracellular enzymes participating in the degradation of plant cell wall polymers, such as Rhamnogalacturonan acetylesterase, would typically be found in saprophytic and plant pathogenic fungi and bacteria.
Probab=40.25 E-value=1.7e+02 Score=22.76 Aligned_cols=58 Identities=19% Similarity=0.019 Sum_probs=39.2
Q ss_pred eEEEEEEcCCCCcch---------HHHHHHHHHHHHHhhhCCcEEEEEeCCC-----------------HHHHHHHHHHh
Q 029880 101 VAVVALLRHFGCPCC---------WELASALKESKARFDSAGVKLIAVGVGT-----------------PNKAQILAERV 154 (186)
Q Consensus 101 ~vvLvffr~~wCp~C---------~~el~~L~~l~~ef~~~Gv~vVaIs~d~-----------------~e~~~~f~~~~ 154 (186)
+-+|+...++.=..+ .+....|.++.+.+++.|..+|.+++-. .+.+++.++++
T Consensus 66 pdlVii~~G~ND~~~~~~~~~~~~~~~~~nl~~ii~~~~~~~~~~il~tp~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 145 (198)
T cd01821 66 GDYVLIQFGHNDQKPKDPEYTEPYTTYKEYLRRYIAEARAKGATPILVTPVTRRTFDEGGKVEDTLGDYPAAMRELAAEE 145 (198)
T ss_pred CCEEEEECCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHCCCeEEEECCccccccCCCCcccccchhHHHHHHHHHHHh
Confidence 445555556543333 3456677788888899999988886432 24578899999
Q ss_pred CCeeee
Q 029880 155 GNVFIT 160 (186)
Q Consensus 155 ~~~l~f 160 (186)
+ ++|
T Consensus 146 ~--~~~ 149 (198)
T cd01821 146 G--VPL 149 (198)
T ss_pred C--CCE
Confidence 9 765
No 276
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=40.18 E-value=1.5e+02 Score=21.94 Aligned_cols=55 Identities=13% Similarity=0.120 Sum_probs=37.7
Q ss_pred CeEEEEEEcCCCCcchHHHHHHHHHHHHHhhhCCcEEEEEeCCC-HHHHHHHHHHhC
Q 029880 100 GVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGT-PNKAQILAERVG 155 (186)
Q Consensus 100 g~vvLvffr~~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~d~-~e~~~~f~~~~~ 155 (186)
.+.+++|=-.+.||.-..-...+.+.+++..+. +.+.-+..-. .+--.+.++++|
T Consensus 19 ~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~-~~~y~l~v~~~R~vSn~IAe~~~ 74 (105)
T PF11009_consen 19 EKPVLIFKHSTRCPISAMALREFEKFWEESPDE-IPVYYLDVIEYRPVSNAIAEDFG 74 (105)
T ss_dssp -SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT-----EEEEEGGGGHHHHHHHHHHHT
T ss_pred cCcEEEEEeCCCChhhHHHHHHHHHHhhcCCcc-ceEEEEEEEeCchhHHHHHHHhC
Confidence 467777777999999999999999999887765 7776666544 455666778888
No 277
>PF08821 CGGC: CGGC domain; InterPro: IPR014925 Proteins in this entry are a quite highly conserved sequence of CGGC in its central region. The region has many conserved cysteines and histidines suggestive of a zinc binding function.
Probab=40.10 E-value=85 Score=23.20 Aligned_cols=62 Identities=21% Similarity=0.345 Sum_probs=40.3
Q ss_pred CEEecccccccCCCeEEEEEEcCCCCcchHHHHHHHHHHHHHhhhCCcEEEEEeCC----C-------HHHHHHHHHHh-
Q 029880 87 EPVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVG----T-------PNKAQILAERV- 154 (186)
Q Consensus 87 ~~vsLsdl~~~~~g~vvLvffr~~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~d----~-------~e~~~~f~~~~- 154 (186)
+.-.|+++-+ ...-++-|+.-.+|| -..+....+++.+.|+++|.+++= + .+.+++..++.
T Consensus 26 r~g~F~~y~~--~~~elvgf~~CgGCp-----g~~~~~~~~~l~~~~~d~IHlssC~~~~~~~~~CP~~~~~~~~I~~~~ 98 (107)
T PF08821_consen 26 RKGAFARYDD--EDVELVGFFTCGGCP-----GRKLVRRIKKLKKNGADVIHLSSCMVKGNPHGPCPHIDEIKKIIEEKF 98 (107)
T ss_pred ccCccccCCC--CCeEEEEEeeCCCCC-----hhHHHHHHHHHHHCCCCEEEEcCCEecCCCCCCCCCHHHHHHHHHHHh
Confidence 4445666621 124556666677788 667777778888999999988762 1 35666666555
Q ss_pred C
Q 029880 155 G 155 (186)
Q Consensus 155 ~ 155 (186)
|
T Consensus 99 g 99 (107)
T PF08821_consen 99 G 99 (107)
T ss_pred C
Confidence 7
No 278
>PRK10976 putative hydrolase; Provisional
Probab=40.10 E-value=92 Score=25.60 Aligned_cols=45 Identities=7% Similarity=0.078 Sum_probs=33.7
Q ss_pred HHHHHHHhhhCCcEEEEEeCCCHHHHHHHHHHhCCeeeeEEEEcCCC
Q 029880 122 LKESKARFDSAGVKLIAVGVGTPNKAQILAERVGNVFITQVLSLPLE 168 (186)
Q Consensus 122 L~~l~~ef~~~Gv~vVaIs~d~~e~~~~f~~~~~~~l~fpvL~Dp~~ 168 (186)
-.+...+++++|+.++..+.-....++.+.++.+ +..++++....
T Consensus 24 ~~~ai~~l~~~G~~~~iaTGR~~~~~~~~~~~l~--~~~~~I~~NGa 68 (266)
T PRK10976 24 AKETLKLLTARGIHFVFATGRHHVDVGQIRDNLE--IKSYMITSNGA 68 (266)
T ss_pred HHHHHHHHHHCCCEEEEEcCCChHHHHHHHHhcC--CCCeEEEcCCc
Confidence 3455666788999988888778888888999998 77666654333
No 279
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=39.69 E-value=1.4e+02 Score=21.67 Aligned_cols=34 Identities=21% Similarity=0.283 Sum_probs=24.9
Q ss_pred HHHHHHHHHhhhCCcEEEEEeCCCHHHHHHHHHHhC
Q 029880 120 SALKESKARFDSAGVKLIAVGVGTPNKAQILAERVG 155 (186)
Q Consensus 120 ~~L~~l~~ef~~~Gv~vVaIs~d~~e~~~~f~~~~~ 155 (186)
+++.+..+..+++|+.+|+|..+. .+.+++++++
T Consensus 57 ~e~i~~~~~a~~~g~~iI~IT~~~--~l~~~~~~~~ 90 (119)
T cd05017 57 EETLSAVEQAKERGAKIVAITSGG--KLLEMAREHG 90 (119)
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCc--hHHHHHHHcC
Confidence 455555566678899999999655 3777887776
No 280
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=39.43 E-value=69 Score=25.42 Aligned_cols=38 Identities=21% Similarity=0.293 Sum_probs=30.1
Q ss_pred HHHHHHHHHhhhCCcEEEEEeCCCHHHHHHHHHHhCCeee
Q 029880 120 SALKESKARFDSAGVKLIAVGVGTPNKAQILAERVGNVFI 159 (186)
Q Consensus 120 ~~L~~l~~ef~~~Gv~vVaIs~d~~e~~~~f~~~~~~~l~ 159 (186)
+...++...++++|+.+..|+....+.++...+.++ +.
T Consensus 90 ~G~~~~L~~L~~~g~~~~ivT~~~~~~~~~~l~~~~--l~ 127 (220)
T TIGR03351 90 PGAEEAFRSLRSSGIKVALTTGFDRDTAERLLEKLG--WT 127 (220)
T ss_pred CCHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHhh--hh
Confidence 445667778888899988888888888888888888 54
No 281
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=39.10 E-value=68 Score=24.79 Aligned_cols=36 Identities=22% Similarity=0.202 Sum_probs=30.2
Q ss_pred HHHHHHHHHhhhCCcEEEEEeCCCHHHHHHHHHHhC
Q 029880 120 SALKESKARFDSAGVKLIAVGVGTPNKAQILAERVG 155 (186)
Q Consensus 120 ~~L~~l~~ef~~~Gv~vVaIs~d~~e~~~~f~~~~~ 155 (186)
+...++...++++|+.++.||.+....++...+.+|
T Consensus 83 ~g~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g 118 (201)
T TIGR01491 83 DYAEELVRWLKEKGLKTAIVSGGIMCLAKKVAEKLN 118 (201)
T ss_pred ccHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHhC
Confidence 445666777888999999999998888888888888
No 282
>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial. Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by TIGR02472.
Probab=38.87 E-value=1.1e+02 Score=24.77 Aligned_cols=49 Identities=6% Similarity=-0.076 Sum_probs=36.1
Q ss_pred HHHHHHHHHHhhhCCcEEEEEeCCCHHHHHHHHHHhCCeeeeE--EEEcCCCCc
Q 029880 119 ASALKESKARFDSAGVKLIAVGVGTPNKAQILAERVGNVFITQ--VLSLPLEVT 170 (186)
Q Consensus 119 l~~L~~l~~ef~~~Gv~vVaIs~d~~e~~~~f~~~~~~~l~fp--vL~Dp~~~~ 170 (186)
+..+.++.+ .+++|+.++.++.-+...++.+.++.+ +..| ++.+....+
T Consensus 17 ~~~~~~~~~-~~~~gi~~viaTGR~~~~v~~~~~~l~--l~~~~~~I~~nGa~i 67 (236)
T TIGR02471 17 LASFVELLR-GSGDAVGFGIATGRSVESAKSRYAKLN--LPSPDVLIARVGTEI 67 (236)
T ss_pred HHHHHHHHH-hcCCCceEEEEeCCCHHHHHHHHHhCC--CCCCCEEEECCCceE
Confidence 344455555 488899999888889999999999998 6555 666655543
No 283
>PRK10026 arsenate reductase; Provisional
Probab=38.53 E-value=43 Score=26.04 Aligned_cols=45 Identities=11% Similarity=0.248 Sum_probs=31.7
Q ss_pred EEEEcCCCCcchHHHHHHHHHHHHHhhhCCcEEEEEeC--C--CHHHHHHHHHHhC
Q 029880 104 VALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGV--G--TPNKAQILAERVG 155 (186)
Q Consensus 104 Lvffr~~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~--d--~~e~~~~f~~~~~ 155 (186)
+.+|....|.-|++.+.-|.+ +|+.+..+.. + +.++++.+.++.|
T Consensus 4 i~iY~~p~Cst~RKA~~wL~~-------~gi~~~~~d~~~~ppt~~eL~~~l~~~g 52 (141)
T PRK10026 4 ITIYHNPACGTSRNTLEMIRN-------SGTEPTIIHYLETPPTRDELVKLIADMG 52 (141)
T ss_pred EEEEeCCCCHHHHHHHHHHHH-------CCCCcEEEeeeCCCcCHHHHHHHHHhCC
Confidence 567889999999998866654 4555555443 3 3567888888777
No 284
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=38.51 E-value=1.1e+02 Score=19.90 Aligned_cols=52 Identities=17% Similarity=0.310 Sum_probs=28.9
Q ss_pred EEEcCCCCcchHHHHHHHHHHHHHhhhCCcEEEEEeCCCHHHHHHHHHHhCCeeeeEEEEcC
Q 029880 105 ALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKAQILAERVGNVFITQVLSLP 166 (186)
Q Consensus 105 vffr~~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~d~~e~~~~f~~~~~~~l~fpvL~Dp 166 (186)
..|-..+||+|++-.-.|. .+|+.+-.+..+.... ..+ +..+ .-..|+|.|.
T Consensus 3 ~Ly~~~~~p~c~kv~~~L~-------~~gi~y~~~~~~~~~~-~~~-~~~~-~~~vP~l~~~ 54 (77)
T cd03040 3 TLYQYKTCPFCCKVRAFLD-------YHGIPYEVVEVNPVSR-KEI-KWSS-YKKVPILRVE 54 (77)
T ss_pred EEEEcCCCHHHHHHHHHHH-------HCCCceEEEECCchhH-HHH-HHhC-CCccCEEEEC
Confidence 3455688999998875554 4555544444443221 122 2232 1357888865
No 285
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=38.45 E-value=94 Score=24.72 Aligned_cols=43 Identities=21% Similarity=0.142 Sum_probs=32.8
Q ss_pred HHHHHHHHhhhCCcEEEEEeCCCHHHHHHHHHHhCCeeeeEEEEc
Q 029880 121 ALKESKARFDSAGVKLIAVGVGTPNKAQILAERVGNVFITQVLSL 165 (186)
Q Consensus 121 ~L~~l~~ef~~~Gv~vVaIs~d~~e~~~~f~~~~~~~l~fpvL~D 165 (186)
...+...+++++|+.++..+.-....++.+.+..+ +.-++++.
T Consensus 22 ~~~~~i~~l~~~g~~~~~~TGR~~~~~~~~~~~l~--~~~~~i~~ 64 (215)
T TIGR01487 22 RAIEAIRKAEKKGIPVSLVTGNTVPFARALAVLIG--TSGPVVAE 64 (215)
T ss_pred HHHHHHHHHHHCCCEEEEEcCCcchhHHHHHHHhC--CCCcEEEc
Confidence 44556677788999888888778888899999998 76555553
No 286
>PRK14010 potassium-transporting ATPase subunit B; Provisional
Probab=37.95 E-value=63 Score=31.47 Aligned_cols=37 Identities=16% Similarity=0.183 Sum_probs=31.7
Q ss_pred HHHHHHHHhhhCCcEEEEEeCCCHHHHHHHHHHhCCeee
Q 029880 121 ALKESKARFDSAGVKLIAVGVGTPNKAQILAERVGNVFI 159 (186)
Q Consensus 121 ~L~~l~~ef~~~Gv~vVaIs~d~~e~~~~f~~~~~~~l~ 159 (186)
+..+..+++++.|++++.|+-|+...++..+++.| +.
T Consensus 445 ~a~e~I~~Lr~~GI~vvMiTGDn~~TA~aIA~elG--I~ 481 (673)
T PRK14010 445 GLVERFRELREMGIETVMCTGDNELTAATIAKEAG--VD 481 (673)
T ss_pred HHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcC--Cc
Confidence 45566677889999999999999999999999999 64
No 287
>PLN02954 phosphoserine phosphatase
Probab=37.92 E-value=65 Score=25.65 Aligned_cols=38 Identities=16% Similarity=0.201 Sum_probs=32.3
Q ss_pred HHHHHHHHHhhhCCcEEEEEeCCCHHHHHHHHHHhCCeee
Q 029880 120 SALKESKARFDSAGVKLIAVGVGTPNKAQILAERVGNVFI 159 (186)
Q Consensus 120 ~~L~~l~~ef~~~Gv~vVaIs~d~~e~~~~f~~~~~~~l~ 159 (186)
|.+.++.+.++++|+.+..|+.+....+....+.+| ++
T Consensus 87 pg~~e~l~~l~~~g~~~~IvS~~~~~~i~~~l~~~g--i~ 124 (224)
T PLN02954 87 PGIPELVKKLRARGTDVYLVSGGFRQMIAPVAAILG--IP 124 (224)
T ss_pred ccHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHhC--CC
Confidence 566777778888999999999999888999999999 65
No 288
>PRK01122 potassium-transporting ATPase subunit B; Provisional
Probab=37.67 E-value=62 Score=31.60 Aligned_cols=36 Identities=25% Similarity=0.396 Sum_probs=31.3
Q ss_pred HHHHHHHHHhhhCCcEEEEEeCCCHHHHHHHHHHhC
Q 029880 120 SALKESKARFDSAGVKLIAVGVGTPNKAQILAERVG 155 (186)
Q Consensus 120 ~~L~~l~~ef~~~Gv~vVaIs~d~~e~~~~f~~~~~ 155 (186)
+...+..+++++.|++++.|+-|++..++..+++.|
T Consensus 448 ~~~~eai~~Lr~~GI~vvMiTGDn~~TA~aIA~elG 483 (679)
T PRK01122 448 PGIKERFAELRKMGIKTVMITGDNPLTAAAIAAEAG 483 (679)
T ss_pred hhHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcC
Confidence 455667778889999999999999999999999999
No 289
>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=37.42 E-value=50 Score=29.70 Aligned_cols=44 Identities=14% Similarity=0.154 Sum_probs=36.7
Q ss_pred chHHHHHHHHHHHHHhhhCCcEEEEEeCCCHHHHHHHHHHhCCeee
Q 029880 114 CCWELASALKESKARFDSAGVKLIAVGVGTPNKAQILAERVGNVFI 159 (186)
Q Consensus 114 ~C~~el~~L~~l~~ef~~~Gv~vVaIs~d~~e~~~~f~~~~~~~l~ 159 (186)
.|..-...+.+......+.+.+|++|..-+.+.+++|+++++ ++
T Consensus 13 g~g~ia~~f~~al~~~p~s~~~Ivava~~s~~~A~~fAq~~~--~~ 56 (351)
T KOG2741|consen 13 GAGRIARDFVRALHTLPESNHQIVAVADPSLERAKEFAQRHN--IP 56 (351)
T ss_pred ehhHHHHHHHHHhccCcccCcEEEEEecccHHHHHHHHHhcC--CC
Confidence 566677777777666777899999999999999999999999 63
No 290
>cd00858 GlyRS_anticodon GlyRS Glycyl-anticodon binding domain. GlyRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=37.23 E-value=1.6e+02 Score=21.43 Aligned_cols=52 Identities=13% Similarity=0.050 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHhhhCCcEEEE-EeCCCHHHHHHHHHHhCCeeeeEEEEcCCCCccc
Q 029880 118 LASALKESKARFDSAGVKLIA-VGVGTPNKAQILAERVGNVFITQVLSLPLEVTPS 172 (186)
Q Consensus 118 el~~L~~l~~ef~~~Gv~vVa-Is~d~~e~~~~f~~~~~~~l~fpvL~Dp~~~~~~ 172 (186)
......++..+++++|+.+.. .. ......-+++++.| ++|-++..++..-..
T Consensus 40 ~~~~a~~la~~LR~~gi~v~~d~~-~sl~kqlk~A~k~g--~~~~iiiG~~e~~~~ 92 (121)
T cd00858 40 LVEIAKEISEELRELGFSVKYDDS-GSIGRRYARQDEIG--TPFCVTVDFDTLEDG 92 (121)
T ss_pred HHHHHHHHHHHHHHCCCEEEEeCC-CCHHHHHHHhHhcC--CCEEEEECcCchhCC
Confidence 344555678888999988766 45 66677777889999 999999886654333
No 291
>cd01026 TOPRIM_OLD TOPRIM_OLD: topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain of the type found in bacterial and archaeal nucleases of the OLD (overcome lysogenization defect) family. The bacteriophage P2 OLD protein, which has DNase as well as RNase activity, consists of an N-terminal ABC-type ATPase domain and a C-terminal Toprim domain; the nuclease activity of OLD is stimulated by ATP, though the ATPase activity is not DNA-dependent. Functional details on OLD are scant and further experimentation is required to define the relationship between the ATPase and Toprim nuclease domains. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). The conserved glutamate may act as a general acid in strand cleavage by nucleases. The DXD motif may co-ordinate Mg2+, a cofactor required for full catalytic function.
Probab=37.15 E-value=1.5e+02 Score=20.82 Aligned_cols=42 Identities=24% Similarity=0.221 Sum_probs=34.1
Q ss_pred HhhhCCcEEEEEeCCCHHHHHHHHHHhCCeeeeEEEEcCCCCcc
Q 029880 128 RFDSAGVKLIAVGVGTPNKAQILAERVGNVFITQVLSLPLEVTP 171 (186)
Q Consensus 128 ef~~~Gv~vVaIs~d~~e~~~~f~~~~~~~l~fpvL~Dp~~~~~ 171 (186)
.+...|+.||.++..+......+...++ +++-++.|-|....
T Consensus 28 ~~~~~~i~ii~~gG~~~~~~~~ll~~~~--i~~~vi~D~D~~~~ 69 (97)
T cd01026 28 DLDEAGISIIPVGGKNFKPFIKLLNALG--IPVAVLTDLDAKRN 69 (97)
T ss_pred CHHHCCEEEEEeCCcchHHHHHHHHHcC--CCEEEEEeCCCCCC
Confidence 3677899999998776666777888899 99999999887654
No 292
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=37.07 E-value=1.3e+02 Score=20.30 Aligned_cols=51 Identities=14% Similarity=0.106 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHhhhCCcEEEEEeC-CCHHHHHHHHHHhCCeeeeEEEEcCCCC
Q 029880 117 ELASALKESKARFDSAGVKLIAVGV-GTPNKAQILAERVGNVFITQVLSLPLEV 169 (186)
Q Consensus 117 ~el~~L~~l~~ef~~~Gv~vVaIs~-d~~e~~~~f~~~~~~~l~fpvL~Dp~~~ 169 (186)
.......++..+++..|+.+..-.. ......-+++++.| ++|-++...+..
T Consensus 15 ~~~~~a~~la~~Lr~~g~~v~~d~~~~~l~k~i~~a~~~g--~~~~iiiG~~e~ 66 (94)
T cd00861 15 VQQELAEKLYAELQAAGVDVLLDDRNERPGVKFADADLIG--IPYRIVVGKKSA 66 (94)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEECCCCCcccchhHHHhcC--CCEEEEECCchh
Confidence 4445566778888899998865332 24455666788999 999888876543
No 293
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=37.03 E-value=27 Score=23.14 Aligned_cols=55 Identities=20% Similarity=0.070 Sum_probs=32.0
Q ss_pred EcCCCCcchHHHHHHHHHHHHHhhhCCcEEEEEeCCCHHHHHHHHHHhCCeeeeEEEEcCCCC
Q 029880 107 LRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKAQILAERVGNVFITQVLSLPLEV 169 (186)
Q Consensus 107 fr~~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~d~~e~~~~f~~~~~~~l~fpvL~Dp~~~ 169 (186)
|...+||+|++-.-.|... +-.++++-|..+.. -..|.+..+ .-..|+|.|.+..
T Consensus 2 y~~~~Sp~~~kv~~~l~~~-----~i~~~~~~v~~~~~--~~~~~~~~p-~~~vPvL~~~g~~ 56 (75)
T PF13417_consen 2 YGFPGSPYSQKVRLALEEK-----GIPYELVPVDPEEK--RPEFLKLNP-KGKVPVLVDDGEV 56 (75)
T ss_dssp EEETTSHHHHHHHHHHHHH-----TEEEEEEEEBTTST--SHHHHHHST-TSBSSEEEETTEE
T ss_pred CCcCCChHHHHHHHHHHHc-----CCeEEEeccCcccc--hhHHHhhcc-cccceEEEECCEE
Confidence 4568999999877665533 22345666665543 333444443 1367888866443
No 294
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=36.95 E-value=8.7 Score=32.73 Aligned_cols=35 Identities=23% Similarity=0.284 Sum_probs=27.4
Q ss_pred EEEEEEcCCCCcchHHHHHHHHHHHHHhhhCCcEE
Q 029880 102 AVVALLRHFGCPCCWELASALKESKARFDSAGVKL 136 (186)
Q Consensus 102 vvLvffr~~wCp~C~~el~~L~~l~~ef~~~Gv~v 136 (186)
--++.|.+.|||.|..-.+.+..+..-=.+.||++
T Consensus 41 ewmi~~~ap~~psc~~~~~~~~~~a~~s~dL~v~v 75 (248)
T KOG0913|consen 41 EWMIEFGAPWCPSCSDLIPHLENFATVSLDLGVKV 75 (248)
T ss_pred HHHHHhcCCCCccccchHHHHhccCCccCCCceeE
Confidence 34556679999999999999998876666677665
No 295
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=36.53 E-value=94 Score=23.94 Aligned_cols=62 Identities=15% Similarity=0.148 Sum_probs=42.6
Q ss_pred EecccccccCCCeEEEEEEcCC--CCcchHHHHHHHHHHHHHhhhCCcEEEEEeCCCHHHHHHHHHHhC
Q 029880 89 VLFKDLWDQNEGVAVVALLRHF--GCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKAQILAERVG 155 (186)
Q Consensus 89 vsLsdl~~~~~g~vvLvffr~~--wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~d~~e~~~~f~~~~~ 155 (186)
-++.++.. .+...++|+.+. -+|-+..-.--|.++.++|.+..+.++-|+.|.... .+.++|
T Consensus 25 ~~~~~~~~--~~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~~~~---LA~~fg 88 (132)
T PRK11509 25 SRLDDWLT--QAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSEA---IGDRFG 88 (132)
T ss_pred ccHHHHHh--CCCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCCCHH---HHHHcC
Confidence 45667764 446777888765 566677777777888888855558899999887544 344555
No 296
>PF08235 LNS2: LNS2 (Lipin/Ned1/Smp2); InterPro: IPR013209 This domain is found in Saccharomyces cerevisiae (Baker's yeast) protein SMP2, proteins with an N-terminal lipin domain (IPR007651 from INTERPRO) and phosphatidylinositol transfer proteins []. SMP2 is involved in plasmid maintenance and respiration []. Lipin proteins are involved in adipose tissue development and insulin resistance [].
Probab=36.45 E-value=95 Score=24.65 Aligned_cols=51 Identities=14% Similarity=0.154 Sum_probs=39.3
Q ss_pred HHHHHHHHHhhhCCcEEEEEeCCCH---HHHHHHHHHh-----CCeeee-EEEEcCCCCccc
Q 029880 120 SALKESKARFDSAGVKLIAVGVGTP---NKAQILAERV-----GNVFIT-QVLSLPLEVTPS 172 (186)
Q Consensus 120 ~~L~~l~~ef~~~Gv~vVaIs~d~~---e~~~~f~~~~-----~~~l~f-pvL~Dp~~~~~~ 172 (186)
+...+++..+.++|..++=++.-.. ...+.|.+.+ + +|- |++.-|++.+..
T Consensus 30 ~g~~~l~~~i~~~GY~ilYlTaRp~~qa~~Tr~~L~~~~q~~~~--lP~Gpv~~sP~~l~~a 89 (157)
T PF08235_consen 30 PGAAELYRKIADNGYKILYLTARPIGQANRTRSWLAQHQQQGHN--LPDGPVLLSPDSLFSA 89 (157)
T ss_pred hcHHHHHHHHHHCCeEEEEECcCcHHHHHHHHHHHHHHHhCCcc--CCCCCEEECCcchhhh
Confidence 5677888999999999999998774 3477888777 6 654 888888765543
No 297
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=36.21 E-value=80 Score=25.88 Aligned_cols=54 Identities=9% Similarity=-0.049 Sum_probs=32.3
Q ss_pred eEEEEEEcCCCCcchHHHHHHHHHHHHHhhhCCcEEEEEeCCCHHH--HHHHHHHhC
Q 029880 101 VAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNK--AQILAERVG 155 (186)
Q Consensus 101 ~vvLvffr~~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~d~~e~--~~~f~~~~~ 155 (186)
..+++..|++-.-.- ...|...++.++++++|+.+..++..+.+. ..+..++.|
T Consensus 9 ~~~~~D~dG~l~~~~-~~~pga~e~L~~L~~~G~~~~ivTN~~~~~~~~~~~L~~~g 64 (242)
T TIGR01459 9 DVFLLDLWGVIIDGN-HTYPGAVQNLNKIIAQGKPVYFVSNSPRNIFSLHKTLKSLG 64 (242)
T ss_pred CEEEEecccccccCC-ccCccHHHHHHHHHHCCCEEEEEeCCCCChHHHHHHHHHCC
Confidence 455555555433221 235667777778888888888887655332 235567777
No 298
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=36.12 E-value=1e+02 Score=28.74 Aligned_cols=67 Identities=15% Similarity=0.112 Sum_probs=48.8
Q ss_pred CCCCCcCCeEEECCCCCEEecccccccCCCeEEEEEEcCCCCcchHHHHHHHHHHHHHhhhCCcEEEEEeCC
Q 029880 71 NVGDLLGDFSIFTAAGEPVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVG 142 (186)
Q Consensus 71 ~~G~~aPdf~L~d~~G~~vsLsdl~~~~~g~vvLvffr~~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~d 142 (186)
..++.+-.+.+.=.+|+.|+|.+|. |..-+|..-++. -.+.+-+...+.+..++.+.||-||-|..+
T Consensus 271 ~Ree~L~rL~v~l~~~~~v~l~~LR----g~~RvvIvAG~~-e~v~~al~~ae~~r~~L~~r~VlvVPv~~~ 337 (453)
T PLN03098 271 TRDETLSRLPVRLSTNRIVELVQLR----DITRPVILAGTK-ESVTLAMQKAERYRTELLKRGVLLIPVVWG 337 (453)
T ss_pred HhhhhhccceEeccCCCEEeHHHhc----CcceEEEEECCH-HHHHHHHHHhHHHHHHHHHcCcEEEEEecC
Confidence 4445566666655568899999994 333333332433 788888889999999999999999999876
No 299
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=35.80 E-value=63 Score=25.63 Aligned_cols=36 Identities=17% Similarity=0.249 Sum_probs=29.6
Q ss_pred HHHHHHHHHhhhCCcEEEEEeCCCHHHHHHHHHHhC
Q 029880 120 SALKESKARFDSAGVKLIAVGVGTPNKAQILAERVG 155 (186)
Q Consensus 120 ~~L~~l~~ef~~~Gv~vVaIs~d~~e~~~~f~~~~~ 155 (186)
+...++.+.++++|+.+..||.+....+..+.+..+
T Consensus 88 ~g~~~~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~~ 123 (219)
T TIGR00338 88 EGAEELVKTLKEKGYKVAVISGGFDLFAEHVKDKLG 123 (219)
T ss_pred CCHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcC
Confidence 345556677788999999999998888888999888
No 300
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=34.90 E-value=1.5e+02 Score=22.90 Aligned_cols=50 Identities=12% Similarity=0.125 Sum_probs=36.7
Q ss_pred HHHHHHHHHhhhCCcEEEEEeCCCHHHH---HHHHHH-----hCCeee-eEEEEcCCCCcc
Q 029880 120 SALKESKARFDSAGVKLIAVGVGTPNKA---QILAER-----VGNVFI-TQVLSLPLEVTP 171 (186)
Q Consensus 120 ~~L~~l~~ef~~~Gv~vVaIs~d~~e~~---~~f~~~-----~~~~l~-fpvL~Dp~~~~~ 171 (186)
+...+++.+++++|+.++-++.-....+ ++|.++ ++ ++ -|++.-+++...
T Consensus 30 ~~~~~a~~~l~~~G~~ivy~TGRp~~~~~~t~~~l~~~~~~~~~--lp~g~li~~~g~~~~ 88 (157)
T smart00775 30 PGVAKLYRDIQNNGYKILYLTARPIGQADRTRSYLSQIKQDGHN--LPHGPVLLSPDRLFA 88 (157)
T ss_pred HHHHHHHHHHHHcCCeEEEEcCCcHHHHHHHHHHHHHhhhcccc--CCCceEEEcCCcchh
Confidence 6777888889999999888888776554 578877 45 55 478877665543
No 301
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=34.79 E-value=72 Score=24.90 Aligned_cols=36 Identities=17% Similarity=0.337 Sum_probs=30.2
Q ss_pred HHHHHHHHHhhhCCcEEEEEeCCCHHHHHHHHHHhC
Q 029880 120 SALKESKARFDSAGVKLIAVGVGTPNKAQILAERVG 155 (186)
Q Consensus 120 ~~L~~l~~ef~~~Gv~vVaIs~d~~e~~~~f~~~~~ 155 (186)
+...++..+++++|+.+..++.++.+.++...++.|
T Consensus 95 ~~~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l~~~g 130 (198)
T TIGR01428 95 PDVPAGLRALKERGYRLAILSNGSPAMLKSLVKHAG 130 (198)
T ss_pred CCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHCC
Confidence 566677778888999999999998888888888888
No 302
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=34.75 E-value=51 Score=23.62 Aligned_cols=33 Identities=12% Similarity=0.331 Sum_probs=22.7
Q ss_pred cCCCCcchHHHHHHHHHHHHHhhhCCcEEEEEeCCC
Q 029880 108 RHFGCPCCWELASALKESKARFDSAGVKLIAVGVGT 143 (186)
Q Consensus 108 r~~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~d~ 143 (186)
.-.+||.|..++..+.+... ...+.++.+..+.
T Consensus 3 YDg~C~lC~~~~~~l~~~d~---~~~l~~~~~~~~~ 35 (114)
T PF04134_consen 3 YDGDCPLCRREVRFLRRRDR---GGRLRFVDIQSEP 35 (114)
T ss_pred ECCCCHhHHHHHHHHHhcCC---CCCEEEEECCChh
Confidence 46799999999988887711 2446666664333
No 303
>PF03129 HGTP_anticodon: Anticodon binding domain; InterPro: IPR004154 tRNA synthetases, or tRNA ligases are involved in protein synthesis. This domain is found in histidyl, glycyl, threonyl and prolyl tRNA synthetases [] it is probably the anticodon binding domain [].; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding; PDB: 1KOG_B 1EVL_D 1EVK_B 1QF6_A 1FYF_B 2I4O_A 2I4M_A 2I4N_A 2I4L_A 1HC7_D ....
Probab=34.62 E-value=1.4e+02 Score=20.26 Aligned_cols=48 Identities=15% Similarity=0.131 Sum_probs=34.8
Q ss_pred HHHHHHHHHHhhhCCcEEEEEe-CCCHHHHHHHHHHhCCeeeeEEEEcCCC
Q 029880 119 ASALKESKARFDSAGVKLIAVG-VGTPNKAQILAERVGNVFITQVLSLPLE 168 (186)
Q Consensus 119 l~~L~~l~~ef~~~Gv~vVaIs-~d~~e~~~~f~~~~~~~l~fpvL~Dp~~ 168 (186)
...-.++...+++.|+.+..-. ..+....-+.++..| ++|-++..++.
T Consensus 15 ~~~a~~l~~~L~~~gi~v~~d~~~~~~~k~~~~a~~~g--~p~~iiiG~~e 63 (94)
T PF03129_consen 15 IEYAQELANKLRKAGIRVELDDSDKSLGKQIKYADKLG--IPFIIIIGEKE 63 (94)
T ss_dssp HHHHHHHHHHHHHTTSEEEEESSSSTHHHHHHHHHHTT--ESEEEEEEHHH
T ss_pred HHHHHHHHHHHHHCCCEEEEECCCCchhHHHHHHhhcC--CeEEEEECchh
Confidence 3444567888999998776664 334566677788999 99998887543
No 304
>cd00738 HGTP_anticodon HGTP anticodon binding domain, as found at the C-terminus of histidyl, glycyl, threonyl and prolyl tRNA synthetases, which are classified as a group of class II aminoacyl-tRNA synthetases (aaRS). In aaRSs, the anticodon binding domain is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only. This domain is also found in the accessory subunit of mitochondrial polymerase gamma (Pol gamma b).
Probab=34.21 E-value=1.4e+02 Score=19.89 Aligned_cols=50 Identities=14% Similarity=-0.008 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHhhhCCcEEEEEeC-CCHHHHHHHHHHhCCeeeeEEEEcCCC
Q 029880 117 ELASALKESKARFDSAGVKLIAVGV-GTPNKAQILAERVGNVFITQVLSLPLE 168 (186)
Q Consensus 117 ~el~~L~~l~~ef~~~Gv~vVaIs~-d~~e~~~~f~~~~~~~l~fpvL~Dp~~ 168 (186)
.......++..+++..|+.+..... .......+++++.| ++|-++.+++.
T Consensus 15 ~~~~~a~~~~~~Lr~~g~~v~~~~~~~~~~k~~~~a~~~g--~~~~iiig~~e 65 (94)
T cd00738 15 EAREYAQKLLNALLANGIRVLYDDRERKIGKKFREADLRG--VPFAVVVGEDE 65 (94)
T ss_pred HHHHHHHHHHHHHHHCCCEEEecCCCcCHhHHHHHHHhCC--CCEEEEECCCh
Confidence 3444555677888999987765433 34566677788899 99988887644
No 305
>PRK10200 putative racemase; Provisional
Probab=33.64 E-value=82 Score=26.13 Aligned_cols=44 Identities=20% Similarity=0.259 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHhhhCCcEEEEEeCCCHHHH-HHHHHHhCCeeeeEEEE
Q 029880 117 ELASALKESKARFDSAGVKLIAVGVGTPNKA-QILAERVGNVFITQVLS 164 (186)
Q Consensus 117 ~el~~L~~l~~ef~~~Gv~vVaIs~d~~e~~-~~f~~~~~~~l~fpvL~ 164 (186)
.-.+.|.+..+.+++.|+++|+|-+++.... ....++.+ .|++.
T Consensus 59 ~~~~~l~~~~~~L~~~g~~~iviaCNTah~~~~~l~~~~~----iPii~ 103 (230)
T PRK10200 59 KTGDILAEAALGLQRAGAEGIVLCTNTMHKVADAIESRCS----LPFLH 103 (230)
T ss_pred hHHHHHHHHHHHHHHcCCCEEEECCchHHHHHHHHHHhCC----CCEee
Confidence 3567888889999999999999999997653 44444444 56665
No 306
>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase. This model describes the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast.
Probab=33.26 E-value=80 Score=30.98 Aligned_cols=37 Identities=30% Similarity=0.233 Sum_probs=31.6
Q ss_pred HHHHHHHhhhCCcEEEEEeCCCHHHHHHHHHHhCCeeee
Q 029880 122 LKESKARFDSAGVKLIAVGVGTPNKAQILAERVGNVFIT 160 (186)
Q Consensus 122 L~~l~~ef~~~Gv~vVaIs~d~~e~~~~f~~~~~~~l~f 160 (186)
..+..+++++.|++++.|+.|+...++..+++.| +.-
T Consensus 447 a~~aI~~l~~aGI~v~miTGD~~~tA~~IA~~lG--I~~ 483 (755)
T TIGR01647 447 TKETIERARHLGVEVKMVTGDHLAIAKETARRLG--LGT 483 (755)
T ss_pred HHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcC--CCC
Confidence 3455667889999999999999999999999999 643
No 307
>PRK10853 putative reductase; Provisional
Probab=33.15 E-value=1.1e+02 Score=22.84 Aligned_cols=45 Identities=16% Similarity=0.148 Sum_probs=30.9
Q ss_pred EEEEcCCCCcchHHHHHHHHHHHHHhhhCCcEEEEEeCC----CHHHHHHHHHHhC
Q 029880 104 VALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVG----TPNKAQILAERVG 155 (186)
Q Consensus 104 Lvffr~~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~d----~~e~~~~f~~~~~ 155 (186)
+.+|....|.-|++.+.-|. ++|+.+..+..- +.++++.+.++.|
T Consensus 2 i~iy~~~~C~t~rkA~~~L~-------~~~i~~~~~d~~k~p~s~~eL~~~l~~~g 50 (118)
T PRK10853 2 VTLYGIKNCDTIKKARRWLE-------AQGIDYRFHDYRVDGLDSELLQGFIDELG 50 (118)
T ss_pred EEEEcCCCCHHHHHHHHHHH-------HcCCCcEEeehccCCcCHHHHHHHHHHcC
Confidence 45777889999998776555 446666555532 3566777777776
No 308
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=32.81 E-value=1.4e+02 Score=24.92 Aligned_cols=49 Identities=16% Similarity=0.127 Sum_probs=36.7
Q ss_pred HHHHHHHHhhhCCcEEEEEeCCCHHHHHHHHHHhCCeee-eEEEEcCCCCcc
Q 029880 121 ALKESKARFDSAGVKLIAVGVGTPNKAQILAERVGNVFI-TQVLSLPLEVTP 171 (186)
Q Consensus 121 ~L~~l~~ef~~~Gv~vVaIs~d~~e~~~~f~~~~~~~l~-fpvL~Dp~~~~~ 171 (186)
.-.+...+++++|+.++..+.-....++.++++.+ +. -|+++.....+.
T Consensus 28 ~~~~ai~~l~~~Gi~~viaTGR~~~~i~~~~~~l~--~~~~~~I~~NGa~I~ 77 (271)
T PRK03669 28 PAAPWLTRLREAQVPVILCSSKTAAEMLPLQQTLG--LQGLPLIAENGAVIQ 77 (271)
T ss_pred HHHHHHHHHHHcCCeEEEEcCCCHHHHHHHHHHhC--CCCCcEEEeCCCEEE
Confidence 34455677888999999888888889999999999 64 467765555443
No 309
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=32.60 E-value=1.3e+02 Score=23.39 Aligned_cols=36 Identities=25% Similarity=0.431 Sum_probs=26.0
Q ss_pred HHHHHHHHHhhhCCcEEEEEeCCC-HHHHHHHHHHhC
Q 029880 120 SALKESKARFDSAGVKLIAVGVGT-PNKAQILAERVG 155 (186)
Q Consensus 120 ~~L~~l~~ef~~~Gv~vVaIs~d~-~e~~~~f~~~~~ 155 (186)
+.+.+..+++++.|+.++.++..+ ...++.+.+..+
T Consensus 46 pgv~e~L~~Lk~~g~~l~I~Sn~~~~~~~~~~~~~~g 82 (170)
T TIGR01668 46 PALRDWIEELKAAGRKLLIVSNNAGEQRAKAVEKALG 82 (170)
T ss_pred hhHHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHHcC
Confidence 556667777888888888888776 455666666777
No 310
>cd01450 vWFA_subfamily_ECM Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=32.55 E-value=1.5e+02 Score=21.60 Aligned_cols=42 Identities=26% Similarity=0.319 Sum_probs=27.7
Q ss_pred CCCCcchHHHHHHHHHHHHHhhhCCcEEEEEeCC--CHHHHHHHHHH
Q 029880 109 HFGCPCCWELASALKESKARFDSAGVKLIAVGVG--TPNKAQILAER 153 (186)
Q Consensus 109 ~~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~d--~~e~~~~f~~~ 153 (186)
..+.+.... ...+..+++++.|+.++.|+.+ +.+.+.+++..
T Consensus 111 TDG~~~~~~---~~~~~~~~~~~~~v~v~~i~~g~~~~~~l~~la~~ 154 (161)
T cd01450 111 TDGRSDDGG---DPKEAAAKLKDEGIKVFVVGVGPADEEELREIASC 154 (161)
T ss_pred CCCCCCCCc---chHHHHHHHHHCCCEEEEEeccccCHHHHHHHhCC
Confidence 444444432 4566677777889999988887 45566666654
No 311
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=32.47 E-value=80 Score=20.93 Aligned_cols=58 Identities=9% Similarity=-0.078 Sum_probs=32.9
Q ss_pred EEEcCCCCcchHHHHHHHHHHHHHhhhCCcEEEEEeCCCHH-HHHHHHHHhCCeeeeEEEEcCCC
Q 029880 105 ALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPN-KAQILAERVGNVFITQVLSLPLE 168 (186)
Q Consensus 105 vffr~~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~d~~e-~~~~f~~~~~~~l~fpvL~Dp~~ 168 (186)
.+|+...|+.|++-.-.|.+. +..++++.|.....+ ....|.+-+. .-..|+|.|.+.
T Consensus 2 ~ly~~~~s~~s~rv~~~L~e~-----gl~~e~~~v~~~~~~~~~~~~~~inP-~g~vP~L~~~g~ 60 (73)
T cd03052 2 VLYHWTQSFSSQKVRLVIAEK-----GLRCEEYDVSLPLSEHNEPWFMRLNP-TGEVPVLIHGDN 60 (73)
T ss_pred EEecCCCCccHHHHHHHHHHc-----CCCCEEEEecCCcCccCCHHHHHhCc-CCCCCEEEECCE
Confidence 456778899997766444433 223456666554332 2334665554 125789988543
No 312
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=32.45 E-value=77 Score=24.82 Aligned_cols=36 Identities=19% Similarity=0.234 Sum_probs=28.2
Q ss_pred HHHHHHHHHhhhCCcEEEEEeCCCHHHHHHHHHHhC
Q 029880 120 SALKESKARFDSAGVKLIAVGVGTPNKAQILAERVG 155 (186)
Q Consensus 120 ~~L~~l~~ef~~~Gv~vVaIs~d~~e~~~~f~~~~~ 155 (186)
+...++...++++|+.+..++.+..+.++.+.++.+
T Consensus 88 ~g~~~~L~~l~~~g~~~~i~S~~~~~~~~~~l~~~~ 123 (213)
T TIGR01449 88 PGVEATLGALRAKGLRLGLVTNKPTPLARPLLELLG 123 (213)
T ss_pred CCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcC
Confidence 345566677778899988888888888888888888
No 313
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=32.39 E-value=96 Score=28.64 Aligned_cols=51 Identities=14% Similarity=0.089 Sum_probs=33.3
Q ss_pred CeEEEEEEcCCCCcchHHHHHHHHHHHHHhhhCCcEEEEEeCCCHHHHHHHHHHhC
Q 029880 100 GVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKAQILAERVG 155 (186)
Q Consensus 100 g~vvLvffr~~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~d~~e~~~~f~~~~~ 155 (186)
+++-|-.|-..+||+|..-...++++.-+ ..+|..-.|.. ....+++++++
T Consensus 116 ~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~--~~~i~~~~id~---~~~~~~~~~~~ 166 (517)
T PRK15317 116 GDFHFETYVSLSCHNCPDVVQALNLMAVL--NPNITHTMIDG---ALFQDEVEARN 166 (517)
T ss_pred CCeEEEEEEcCCCCCcHHHHHHHHHHHHh--CCCceEEEEEc---hhCHhHHHhcC
Confidence 57878888899999999888777776553 22565555533 22334444555
No 314
>PF04244 DPRP: Deoxyribodipyrimidine photo-lyase-related protein; InterPro: IPR007357 This family appears to be related to DNA photolyases.; PDB: 3ZXS_A.
Probab=32.34 E-value=1.8e+02 Score=24.18 Aligned_cols=49 Identities=10% Similarity=0.137 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHhhhCCcEEEEEeCCC-------HHHHHHHHHHhCCeeeeEEEEcCCC
Q 029880 118 LASALKESKARFDSAGVKLIAVGVGT-------PNKAQILAERVGNVFITQVLSLPLE 168 (186)
Q Consensus 118 el~~L~~l~~ef~~~Gv~vVaIs~d~-------~e~~~~f~~~~~~~l~fpvL~Dp~~ 168 (186)
...++....++++++|..|.-|..++ .+.+.++.++++ +.--.+.+|..
T Consensus 47 ~~saMRhfa~~L~~~G~~V~Y~~~~~~~~~~s~~~~L~~~~~~~~--~~~~~~~~P~d 102 (224)
T PF04244_consen 47 FFSAMRHFADELRAKGFRVHYIELDDPENTQSFEDALARALKQHG--IDRLHVMEPGD 102 (224)
T ss_dssp HHHHHHHHHHHHHHTT--EEEE-TT-TT--SSHHHHHHHHHHHH------EEEE--S-
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeCCCccccccHHHHHHHHHHHcC--CCEEEEECCCC
Confidence 34566677888999999999998884 346777888888 76666667653
No 315
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=32.27 E-value=1.2e+02 Score=24.14 Aligned_cols=44 Identities=18% Similarity=0.112 Sum_probs=30.2
Q ss_pred HHHHHHhhhCCcEEEEEeCCCHHHHHHHHHHhCCeeeeEEEEcCCC
Q 029880 123 KESKARFDSAGVKLIAVGVGTPNKAQILAERVGNVFITQVLSLPLE 168 (186)
Q Consensus 123 ~~l~~ef~~~Gv~vVaIs~d~~e~~~~f~~~~~~~l~fpvL~Dp~~ 168 (186)
+++.+.+++.|+.|+.|+..+.+.+.++.+... =..-++.-+.+
T Consensus 2 ~~~~~~y~~~gy~v~~~S~~~~~g~~~l~~~l~--~k~~vl~G~SG 45 (161)
T PF03193_consen 2 EELLEQYEKLGYPVFFISAKTGEGIEELKELLK--GKTSVLLGQSG 45 (161)
T ss_dssp HHHHHHHHHTTSEEEE-BTTTTTTHHHHHHHHT--TSEEEEECSTT
T ss_pred HHHHHHHHHcCCcEEEEeCCCCcCHHHHHHHhc--CCEEEEECCCC
Confidence 456778899999999999987666666655555 24556666655
No 316
>PRK11869 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=32.23 E-value=55 Score=28.34 Aligned_cols=22 Identities=23% Similarity=0.390 Sum_probs=13.4
Q ss_pred EcCCCCcchHHH--HHHHHHHHHH
Q 029880 107 LRHFGCPCCWEL--ASALKESKAR 128 (186)
Q Consensus 107 fr~~wCp~C~~e--l~~L~~l~~e 128 (186)
+.+.|||.|-.- +..+.+...+
T Consensus 6 ~~~~~CpGCg~~~i~~~~~~a~~~ 29 (280)
T PRK11869 6 YDIAWCPGCGNFGIRNALMKALSE 29 (280)
T ss_pred CCCCCCcCCCCHHHHHHHHHHHHH
Confidence 468899999643 3344444443
No 317
>PF07905 PucR: Purine catabolism regulatory protein-like family; InterPro: IPR012914 This domain is found in the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR, O32138 from SWISSPROT). PucR is thought to be a transcriptional regulator of genes involved in the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression []. The other members of this family are also putative regulatory proteins.
Probab=32.00 E-value=2.1e+02 Score=21.08 Aligned_cols=43 Identities=21% Similarity=0.428 Sum_probs=33.7
Q ss_pred HHHHHHHHhhhCCcEEEEEeCC-----CHHHHHHHHHHhCCeeeeEEEEcCC
Q 029880 121 ALKESKARFDSAGVKLIAVGVG-----TPNKAQILAERVGNVFITQVLSLPL 167 (186)
Q Consensus 121 ~L~~l~~ef~~~Gv~vVaIs~d-----~~e~~~~f~~~~~~~l~fpvL~Dp~ 167 (186)
.+.++..++.++|+.=++|..+ =++.+.+++++++ ||++.=|.
T Consensus 60 ~~~~~i~~L~~~~~agL~i~~~~~~~~iP~~~i~~A~~~~----lPli~ip~ 107 (123)
T PF07905_consen 60 ELREFIRELAEKGAAGLGIKTGRYLDEIPEEIIELADELG----LPLIEIPW 107 (123)
T ss_pred HHHHHHHHHHHCCCeEEEEeccCccccCCHHHHHHHHHcC----CCEEEeCC
Confidence 5677778888899988888776 3678999999999 77775444
No 318
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=31.90 E-value=1.3e+02 Score=22.15 Aligned_cols=39 Identities=13% Similarity=0.144 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHhhhCCcEEEEEeCC-CHHHHHHHHHHhC
Q 029880 117 ELASALKESKARFDSAGVKLIAVGVG-TPNKAQILAERVG 155 (186)
Q Consensus 117 ~el~~L~~l~~ef~~~Gv~vVaIs~d-~~e~~~~f~~~~~ 155 (186)
.-.+.+.++.++++++|+.+..+|.. ..+.+....+..+
T Consensus 29 ~~~~gv~e~L~~Lk~~g~~l~i~Sn~~~~~~~~~~l~~~~ 68 (128)
T TIGR01681 29 VTIKEIRDKLQTLKKNGFLLALASYNDDPHVAYELLKIFE 68 (128)
T ss_pred HHHHHHHHHHHHHHHCCeEEEEEeCCCCHHHHHHHHHhcc
Confidence 45678888999999999999999888 5665655555544
No 319
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=31.72 E-value=1.1e+02 Score=21.80 Aligned_cols=30 Identities=17% Similarity=0.123 Sum_probs=22.5
Q ss_pred HHHHHHHHHhhhCCcEEEEEeCCCHHHHHH
Q 029880 120 SALKESKARFDSAGVKLIAVGVGTPNKAQI 149 (186)
Q Consensus 120 ~~L~~l~~ef~~~Gv~vVaIs~d~~e~~~~ 149 (186)
+.+.++.+..+.+|+.+|+|+.+....+.+
T Consensus 74 ~~~~~~~~~a~~~g~~iv~iT~~~~~~l~~ 103 (139)
T cd05013 74 KETVEAAEIAKERGAKVIAITDSANSPLAK 103 (139)
T ss_pred HHHHHHHHHHHHcCCeEEEEcCCCCChhHH
Confidence 456666677888999999999987655554
No 320
>TIGR01497 kdpB K+-transporting ATPase, B subunit. One sequence is apparently mis-annotated in the primary literature, but properly annotated by TIGR.
Probab=31.55 E-value=92 Score=30.40 Aligned_cols=37 Identities=24% Similarity=0.290 Sum_probs=31.1
Q ss_pred HHHHHHHHhhhCCcEEEEEeCCCHHHHHHHHHHhCCeee
Q 029880 121 ALKESKARFDSAGVKLIAVGVGTPNKAQILAERVGNVFI 159 (186)
Q Consensus 121 ~L~~l~~ef~~~Gv~vVaIs~d~~e~~~~f~~~~~~~l~ 159 (186)
...+..+++++.|++++.|+.|+...++..+++.| +.
T Consensus 450 ~a~eaI~~l~~~Gi~v~miTGD~~~ta~~iA~~lG--I~ 486 (675)
T TIGR01497 450 GIKERFAQLRKMGIKTIMITGDNRLTAAAIAAEAG--VD 486 (675)
T ss_pred HHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcC--CC
Confidence 45556677888999999999999999999999999 64
No 321
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=31.41 E-value=52 Score=29.25 Aligned_cols=32 Identities=19% Similarity=0.231 Sum_probs=26.3
Q ss_pred CcEEEEEeCCCHHHHHHHHHHhCCeeeeEEEEcCCC
Q 029880 133 GVKLIAVGVGTPNKAQILAERVGNVFITQVLSLPLE 168 (186)
Q Consensus 133 Gv~vVaIs~d~~e~~~~f~~~~~~~l~fpvL~Dp~~ 168 (186)
+++++||..-+.++++++++++| ++ .+.|-+.
T Consensus 27 ~~eLvaV~d~~~erA~~~A~~~g--i~--~y~~~ee 58 (343)
T TIGR01761 27 RFELAGILAQGSERSRALAHRLG--VP--LYCEVEE 58 (343)
T ss_pred CcEEEEEEcCCHHHHHHHHHHhC--CC--ccCCHHH
Confidence 79999999999999999999999 54 4555443
No 322
>COG5561 Predicted metal-binding protein [Function unknown]
Probab=31.20 E-value=35 Score=24.91 Aligned_cols=30 Identities=30% Similarity=0.533 Sum_probs=22.6
Q ss_pred CCCcchHHHHHHHHHHHHHhhhCCcEEEEEe
Q 029880 110 FGCPCCWELASALKESKARFDSAGVKLIAVG 140 (186)
Q Consensus 110 ~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs 140 (186)
.+||.|+.=..+.++-...|++- ++||++.
T Consensus 5 ~gCPG~v~CfKA~ne~~g~Fe~y-v~viaf~ 34 (101)
T COG5561 5 YGCPGEVRCFKAANEGEGKFEEY-VRVIAFI 34 (101)
T ss_pred cCCCchHHHHHHHhccccccccc-EEEEEEE
Confidence 47888888888888777777665 7777764
No 323
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=31.10 E-value=2.3e+02 Score=27.88 Aligned_cols=76 Identities=7% Similarity=-0.006 Sum_probs=50.6
Q ss_pred CCCCCCcCCeEEECCCCCEEecccccccCCCeEEEEEEcCCCCcchHHHHHHHHHHHHHhhhCCcEEEEEeCCCHHHHHH
Q 029880 70 ANVGDLLGDFSIFTAAGEPVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKAQI 149 (186)
Q Consensus 70 l~~G~~aPdf~L~d~~G~~vsLsdl~~~~~g~vvLvffr~~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~d~~e~~~~ 149 (186)
+.-+.....+-+.|.||..+.-.... .+.-.+...+++++|+.++..+.-....+..
T Consensus 409 ~~~~~~~~KLIfsDLDGTLLd~d~~i-----------------------~~~t~eAL~~L~ekGI~~VIATGRs~~~i~~ 465 (694)
T PRK14502 409 LPSSGQFKKIVYTDLDGTLLNPLTYS-----------------------YSTALDALRLLKDKELPLVFCSAKTMGEQDL 465 (694)
T ss_pred CCCcCceeeEEEEECcCCCcCCCCcc-----------------------CHHHHHHHHHHHHcCCeEEEEeCCCHHHHHH
Confidence 34455566666777777666532210 1123455667788999999888888888999
Q ss_pred HHHHhCCeeeeEEEEcCCCCc
Q 029880 150 LAERVGNVFITQVLSLPLEVT 170 (186)
Q Consensus 150 f~~~~~~~l~fpvL~Dp~~~~ 170 (186)
++++.+ +..++++.....+
T Consensus 466 l~~~Lg--l~~~~I~eNGA~I 484 (694)
T PRK14502 466 YRNELG--IKDPFITENGGAI 484 (694)
T ss_pred HHHHcC--CCCeEEEcCCCEE
Confidence 999999 7666776554433
No 324
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=31.05 E-value=1.3e+02 Score=24.76 Aligned_cols=46 Identities=17% Similarity=0.234 Sum_probs=34.5
Q ss_pred HHHHHHhhhCCcEEEEEeCCCHHHHHHHHHHhCCeeeeEEEEcCCCCc
Q 029880 123 KESKARFDSAGVKLIAVGVGTPNKAQILAERVGNVFITQVLSLPLEVT 170 (186)
Q Consensus 123 ~~l~~ef~~~Gv~vVaIs~d~~e~~~~f~~~~~~~l~fpvL~Dp~~~~ 170 (186)
.+...+++++|+.++.++.-+...+..+.++.+ +.-++++.....+
T Consensus 22 ~~~i~~l~~~g~~~~~~TgR~~~~~~~~~~~~~--~~~~~I~~NGa~i 67 (256)
T TIGR01486 22 KEVLERLQELGIPVIPCTSKTAAEVEYLRKELG--LEDPFIVENGGAI 67 (256)
T ss_pred HHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcC--CCCcEEEcCCeEE
Confidence 455566778899999988888888999999999 6556665544433
No 325
>PRK11867 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed
Probab=30.68 E-value=42 Score=29.02 Aligned_cols=21 Identities=19% Similarity=0.314 Sum_probs=14.4
Q ss_pred CCCcchHHHHHHHHHHHHHhhh
Q 029880 110 FGCPCCWELASALKESKARFDS 131 (186)
Q Consensus 110 ~wCp~C~~el~~L~~l~~ef~~ 131 (186)
.|||.|-... -|+.+.+.+.+
T Consensus 18 ~~CpGCg~~~-il~~l~~al~~ 38 (286)
T PRK11867 18 RWCPGCGDGS-ILAALQRALAE 38 (286)
T ss_pred CcCCCCCCHH-HHHHHHHHHHH
Confidence 3999998666 66666666644
No 326
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=30.65 E-value=1.3e+02 Score=23.50 Aligned_cols=55 Identities=11% Similarity=0.108 Sum_probs=39.1
Q ss_pred CeEEEEEEcCCCCcchHHHHHHHHHHHHHhhhCCcEEEEEeCCCHHHHHHHHHHhCCeeee
Q 029880 100 GVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKAQILAERVGNVFIT 160 (186)
Q Consensus 100 g~vvLvffr~~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~d~~e~~~~f~~~~~~~l~f 160 (186)
.++||+-|=..|-|.|...=..|.+...+...- +.|..+.. +++..|.+-++ +..
T Consensus 23 ~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnf-a~Iylvdi---deV~~~~~~~~--l~~ 77 (142)
T KOG3414|consen 23 ERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNF-AVIYLVDI---DEVPDFVKMYE--LYD 77 (142)
T ss_pred ceEEEEEecCCCCchHhhHHHHHHHHHHHHhhc-eEEEEEec---chhhhhhhhhc--ccC
Confidence 489999999999999999888888887776542 22333333 36667777777 544
No 327
>PF12740 Chlorophyllase2: Chlorophyllase enzyme; InterPro: IPR010821 This family consists of several chlorophyllase proteins (3.1.1.14 from EC). Chlorophyllase (Chlase) is the first enzyme involved in chlorophyll degradation and catalyses the hydrolysis of the ester bond to yield chlorophyllide and phytol [, , ].; GO: 0047746 chlorophyllase activity, 0015996 chlorophyll catabolic process
Probab=30.63 E-value=1.6e+02 Score=25.35 Aligned_cols=36 Identities=22% Similarity=0.264 Sum_probs=27.9
Q ss_pred CeEEEEEEcCCCCcchHHHHHHHHHHHHHhhhCCcEEEEEe
Q 029880 100 GVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVG 140 (186)
Q Consensus 100 g~vvLvffr~~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs 140 (186)
.-.||+|+.++.|.... +..+.+.+.+.|+.||+..
T Consensus 16 ~yPVv~f~~G~~~~~s~-----Ys~ll~hvAShGyIVV~~d 51 (259)
T PF12740_consen 16 TYPVVLFLHGFLLINSW-----YSQLLEHVASHGYIVVAPD 51 (259)
T ss_pred CcCEEEEeCCcCCCHHH-----HHHHHHHHHhCceEEEEec
Confidence 35677887777755544 7788888899999999987
No 328
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=30.48 E-value=1.3e+02 Score=24.27 Aligned_cols=39 Identities=23% Similarity=0.238 Sum_probs=24.5
Q ss_pred HHHHHHhhhCCcEEEEEeCCC-----HHHHHHHHHHhCCeeeeEEE
Q 029880 123 KESKARFDSAGVKLIAVGVGT-----PNKAQILAERVGNVFITQVL 163 (186)
Q Consensus 123 ~~l~~ef~~~Gv~vVaIs~d~-----~e~~~~f~~~~~~~l~fpvL 163 (186)
.++...+..+|..|..|+.|+ .++++.|++..+ +++-..
T Consensus 19 aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~--vp~~~~ 62 (196)
T PF00448_consen 19 AKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILG--VPFYVA 62 (196)
T ss_dssp HHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHT--EEEEES
T ss_pred HHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhc--cccchh
Confidence 344444444476777777774 478999999999 765443
No 329
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=30.37 E-value=1.1e+02 Score=19.44 Aligned_cols=57 Identities=12% Similarity=-0.005 Sum_probs=31.7
Q ss_pred EEcCCCCcchHHHHHHHHHHHHHhhhCCcEEEEEeCCCHH-HHHHHHHHhCCeeeeEEEEcCCC
Q 029880 106 LLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPN-KAQILAERVGNVFITQVLSLPLE 168 (186)
Q Consensus 106 ffr~~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~d~~e-~~~~f~~~~~~~l~fpvL~Dp~~ 168 (186)
.|...+||.|++-.-.|.+. +..++++-|.....+ ....|.+... .-..|+|.|.+.
T Consensus 3 Ly~~~~~~~~~~v~~~l~~~-----~~~~~~~~i~~~~~~~~~~~~~~~~p-~~~vP~l~~~~~ 60 (73)
T cd03056 3 LYGFPLSGNCYKVRLLLALL-----GIPYEWVEVDILKGETRTPEFLALNP-NGEVPVLELDGR 60 (73)
T ss_pred EEeCCCCccHHHHHHHHHHc-----CCCcEEEEecCCCcccCCHHHHHhCC-CCCCCEEEECCE
Confidence 45567899999766555543 223455555543322 2344555443 125789987643
No 330
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=30.35 E-value=59 Score=23.43 Aligned_cols=33 Identities=12% Similarity=-0.018 Sum_probs=25.1
Q ss_pred HHHHHHHHHHhhhCCcEEEEEeCCCHHHHHHHH
Q 029880 119 ASALKESKARFDSAGVKLIAVGVGTPNKAQILA 151 (186)
Q Consensus 119 l~~L~~l~~ef~~~Gv~vVaIs~d~~e~~~~f~ 151 (186)
.+++.+..+..+++|+.+|+|.......+.+++
T Consensus 59 t~e~~~~~~~a~~~g~~vi~iT~~~~s~la~~a 91 (126)
T cd05008 59 TADTLAALRLAKEKGAKTVAITNVVGSTLAREA 91 (126)
T ss_pred CHHHHHHHHHHHHcCCeEEEEECCCCChHHHhC
Confidence 456777778888899999999988766555543
No 331
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=30.17 E-value=47 Score=24.01 Aligned_cols=34 Identities=15% Similarity=0.156 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHhhhCCcEEEEEeCCCHHHHHHHH
Q 029880 118 LASALKESKARFDSAGVKLIAVGVGTPNKAQILA 151 (186)
Q Consensus 118 el~~L~~l~~ef~~~Gv~vVaIs~d~~e~~~~f~ 151 (186)
+.+++.+..+..+++|+.+|+|..+....+.+++
T Consensus 59 ~t~~~~~~~~~a~~~g~~vi~iT~~~~s~la~~a 92 (128)
T cd05014 59 ETDELLNLLPHLKRRGAPIIAITGNPNSTLAKLS 92 (128)
T ss_pred CCHHHHHHHHHHHHCCCeEEEEeCCCCCchhhhC
Confidence 4456666677778899999999998776666543
No 332
>PF02677 DUF208: Uncharacterized BCR, COG1636; InterPro: IPR003828 This entry describes proteins of unknown function.
Probab=30.16 E-value=96 Score=25.15 Aligned_cols=41 Identities=22% Similarity=0.450 Sum_probs=24.9
Q ss_pred CCCCcchHHHHHHHHHHHHHhhhCCcEEEEEeCCC---H--------HHHHHHHHHhC
Q 029880 109 HFGCPCCWELASALKESKARFDSAGVKLIAVGVGT---P--------NKAQILAERVG 155 (186)
Q Consensus 109 ~~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~d~---~--------e~~~~f~~~~~ 155 (186)
|..|.+|.... .+.+++.|+++.+.-.++ + +.+++++++.+
T Consensus 4 H~CCaPCs~~~------~~~L~~~g~~vt~~fyNPNIhP~~Ey~~R~~~~~~~~~~~~ 55 (176)
T PF02677_consen 4 HICCAPCSTYP------LERLREEGFDVTGYFYNPNIHPYEEYERRLEELKRFAEKLG 55 (176)
T ss_pred eecCccccHHH------HHHHHHCCCCeEEEEeCCCCCcHHHHHHHHHHHHHHHHHcC
Confidence 66788886553 334455577666655442 1 34677777777
No 333
>cd02430 PTH2 Peptidyl-tRNA hydrolase, type 2 (PTH2). Peptidyl-tRNA hydrolase (PTH) activity releases tRNA from the premature translation termination product peptidyl-tRNA, therefore allowing the tRNA and peptide to be reused in protein synthesis. PTH2 is present in archaea and eukaryotes.
Probab=29.57 E-value=2.1e+02 Score=21.35 Aligned_cols=43 Identities=19% Similarity=0.200 Sum_probs=32.5
Q ss_pred HHHHHhhhCCcEEEEEeCCCHHHHHH---HHHHhCCeeeeEEEEcCCC
Q 029880 124 ESKARFDSAGVKLIAVGVGTPNKAQI---LAERVGNVFITQVLSLPLE 168 (186)
Q Consensus 124 ~l~~ef~~~Gv~vVaIs~d~~e~~~~---f~~~~~~~l~fpvL~Dp~~ 168 (186)
+...++...|...|++..++.+++.+ -++..| +++-++.|...
T Consensus 39 ~~~~~W~~~G~~KiVl~~~~~~el~~l~~~a~~~~--l~~~~v~DAG~ 84 (115)
T cd02430 39 ELLRAWEREGQKKIVLKVNSEEELLELKKKAKSLG--LPTSLIQDAGR 84 (115)
T ss_pred HHHHHHHhcCCcEEEEecCCHHHHHHHHHHHHHcC--CCeEEEEeCCC
Confidence 45667889998889888888766444 456678 99999998654
No 334
>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional
Probab=29.44 E-value=1e+02 Score=30.12 Aligned_cols=42 Identities=17% Similarity=0.289 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHhhhCCcEEEEEeCCCHHHHHHHHHHhCCeeee
Q 029880 117 ELASALKESKARFDSAGVKLIAVGVGTPNKAQILAERVGNVFIT 160 (186)
Q Consensus 117 ~el~~L~~l~~ef~~~Gv~vVaIs~d~~e~~~~f~~~~~~~l~f 160 (186)
..-+...+..+++++.|++++.++.|+...++.++++.| +.+
T Consensus 568 ~~r~~a~~~i~~L~~~gi~~~llTGd~~~~a~~ia~~lg--i~~ 609 (741)
T PRK11033 568 TLRADARQAISELKALGIKGVMLTGDNPRAAAAIAGELG--IDF 609 (741)
T ss_pred CCchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcC--CCe
Confidence 334566667778889999999999999999999999999 653
No 335
>COG1941 FrhG Coenzyme F420-reducing hydrogenase, gamma subunit [Energy production and conversion]
Probab=29.15 E-value=2.5e+02 Score=24.02 Aligned_cols=26 Identities=27% Similarity=0.251 Sum_probs=21.8
Q ss_pred eEEEEEEcCCCCcchHHHHHHHHHHH
Q 029880 101 VAVVALLRHFGCPCCWELASALKESK 126 (186)
Q Consensus 101 ~vvLvffr~~wCp~C~~el~~L~~l~ 126 (186)
++-|-++|-++|..|...+..|.+..
T Consensus 3 ~ikva~~~L~gC~GC~~slldl~E~L 28 (247)
T COG1941 3 KIKVATVWLTGCSGCHMSLLDLYEKL 28 (247)
T ss_pred ceEEEEEEeccccchHHHHHhHHHHH
Confidence 45588999999999999988887754
No 336
>PRK15122 magnesium-transporting ATPase; Provisional
Probab=28.76 E-value=1.1e+02 Score=30.89 Aligned_cols=35 Identities=17% Similarity=0.233 Sum_probs=31.0
Q ss_pred HHHHHHHHhhhCCcEEEEEeCCCHHHHHHHHHHhC
Q 029880 121 ALKESKARFDSAGVKLIAVGVGTPNKAQILAERVG 155 (186)
Q Consensus 121 ~L~~l~~ef~~~Gv~vVaIs~d~~e~~~~f~~~~~ 155 (186)
+..+..++++++|++++.|+.|+...++..+++.|
T Consensus 554 ~a~~aI~~l~~aGI~v~miTGD~~~tA~aIA~~lG 588 (903)
T PRK15122 554 SAAPAIAALRENGVAVKVLTGDNPIVTAKICREVG 588 (903)
T ss_pred HHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcC
Confidence 44556677889999999999999999999999999
No 337
>COG3593 Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair]
Probab=28.65 E-value=69 Score=30.74 Aligned_cols=49 Identities=16% Similarity=0.171 Sum_probs=38.1
Q ss_pred HHHHHHH-HHHhhhCCcEEEEEeCCCHHHHHHHHHHhCCeeeeEEEEcCCCC
Q 029880 119 ASALKES-KARFDSAGVKLIAVGVGTPNKAQILAERVGNVFITQVLSLPLEV 169 (186)
Q Consensus 119 l~~L~~l-~~ef~~~Gv~vVaIs~d~~e~~~~f~~~~~~~l~fpvL~Dp~~~ 169 (186)
++.|.+. .-.++..|+.||.++...-....+|.+.++ +.+-++.|-|..
T Consensus 411 l~~la~~~~~~L~~~gi~VI~~~gs~~k~f~kf~~~~g--I~~~vitD~D~~ 460 (581)
T COG3593 411 LPELARQCGIDLEKEGIIVIEFAGSGLKPFIKFAEAMG--IRVHVITDGDEA 460 (581)
T ss_pred HHHHHHHhccccccCcEEEEeecccCcHHHHHHhhccC--ceEEEEecCCcc
Confidence 3444433 345789999999998888766555999999 999999998764
No 338
>PRK04322 peptidyl-tRNA hydrolase; Provisional
Probab=28.51 E-value=2.3e+02 Score=21.05 Aligned_cols=43 Identities=21% Similarity=0.179 Sum_probs=32.7
Q ss_pred HHHHHhhhCCcEEEEEeCCCHHHHHH---HHHHhCCeeeeEEEEcCCC
Q 029880 124 ESKARFDSAGVKLIAVGVGTPNKAQI---LAERVGNVFITQVLSLPLE 168 (186)
Q Consensus 124 ~l~~ef~~~Gv~vVaIs~d~~e~~~~---f~~~~~~~l~fpvL~Dp~~ 168 (186)
+.+.+++..|...|++..++.+++.+ -+++.| +++-++.|..+
T Consensus 37 ~~~~~W~~~G~~Kvvlkv~~~~el~~l~~~a~~~~--l~~~~v~DAG~ 82 (113)
T PRK04322 37 EWLEEWLNEGQKKVVLKVNSEEELLELKEKAERLG--LPTALIRDAGL 82 (113)
T ss_pred HHHHHHHHCCCcEEEEeCCCHHHHHHHHHHHHHcC--CCEEEEEeCCC
Confidence 45567888999999999988766444 456678 99999998544
No 339
>PRK10517 magnesium-transporting ATPase MgtA; Provisional
Probab=28.49 E-value=1.1e+02 Score=30.90 Aligned_cols=35 Identities=14% Similarity=0.165 Sum_probs=31.1
Q ss_pred HHHHHHHHhhhCCcEEEEEeCCCHHHHHHHHHHhC
Q 029880 121 ALKESKARFDSAGVKLIAVGVGTPNKAQILAERVG 155 (186)
Q Consensus 121 ~L~~l~~ef~~~Gv~vVaIs~d~~e~~~~f~~~~~ 155 (186)
+..+..+++++.|++++.|+.|+...++..+++.|
T Consensus 554 ~a~~aI~~l~~aGI~v~miTGD~~~tA~~IA~~lG 588 (902)
T PRK10517 554 TTAPALKALKASGVTVKILTGDSELVAAKVCHEVG 588 (902)
T ss_pred hHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcC
Confidence 44556677889999999999999999999999999
No 340
>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase. The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis.
Probab=28.29 E-value=1.1e+02 Score=30.61 Aligned_cols=35 Identities=17% Similarity=0.206 Sum_probs=30.9
Q ss_pred HHHHHHHHhhhCCcEEEEEeCCCHHHHHHHHHHhC
Q 029880 121 ALKESKARFDSAGVKLIAVGVGTPNKAQILAERVG 155 (186)
Q Consensus 121 ~L~~l~~ef~~~Gv~vVaIs~d~~e~~~~f~~~~~ 155 (186)
+..+..+++++.|++++.|+.|+...++..+++.|
T Consensus 519 ~~~~aI~~l~~aGI~vvmiTGD~~~tA~aIA~~lG 553 (867)
T TIGR01524 519 STKEAIAALFKNGINVKVLTGDNEIVTARICQEVG 553 (867)
T ss_pred hHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcC
Confidence 44556677889999999999999999999999999
No 341
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=27.93 E-value=1.8e+02 Score=22.07 Aligned_cols=39 Identities=8% Similarity=0.079 Sum_probs=28.4
Q ss_pred HHHHHHHHHhhhCCcEEEEEeCCCH---H------------HHHHHHHHhCCeeee
Q 029880 120 SALKESKARFDSAGVKLIAVGVGTP---N------------KAQILAERVGNVFIT 160 (186)
Q Consensus 120 ~~L~~l~~ef~~~Gv~vVaIs~d~~---e------------~~~~f~~~~~~~l~f 160 (186)
+...+...+++++|+.|+.++.-.. + ...+|.++++ ++|
T Consensus 27 ~~~ie~L~~l~~~G~~IiiaTGR~~~~~~~n~~~i~~~~~~~t~~wL~k~~--ipY 80 (126)
T TIGR01689 27 LAVIEKLRHYKALGFEIVISSSRNMRTYEGNVGKINIHTLPIIILWLNQHN--VPY 80 (126)
T ss_pred HHHHHHHHHHHHCCCEEEEECCCCchhhhccccccchhhHHHHHHHHHHcC--CCC
Confidence 3444556666788999888886542 2 5678999999 988
No 342
>PF01981 PTH2: Peptidyl-tRNA hydrolase PTH2; InterPro: IPR002833 Peptidyl-tRNA hydrolases are enzymes that release tRNAs from peptidyl-tRNA during translation.; GO: 0004045 aminoacyl-tRNA hydrolase activity; PDB: 1RLK_A 1XTY_C 2ZV3_I 2D3K_A 1WN2_A 1Q7S_A 3ERJ_B 1RZW_A.
Probab=27.91 E-value=2e+02 Score=21.14 Aligned_cols=43 Identities=16% Similarity=0.157 Sum_probs=31.2
Q ss_pred HHHHHhhhCCcEEEEEeCCCHHH---HHHHHHHhCCeeeeEEEEcCCC
Q 029880 124 ESKARFDSAGVKLIAVGVGTPNK---AQILAERVGNVFITQVLSLPLE 168 (186)
Q Consensus 124 ~l~~ef~~~Gv~vVaIs~d~~e~---~~~f~~~~~~~l~fpvL~Dp~~ 168 (186)
+.+.++...|..-|++..++.++ +.+-++..| +++.++.|...
T Consensus 40 ~~~~~W~~~g~~Kivlkv~~e~~L~~l~~~a~~~g--l~~~~i~Dag~ 85 (116)
T PF01981_consen 40 EWLREWENNGQKKIVLKVPSEEELLELAKKAKEAG--LPHYLIRDAGR 85 (116)
T ss_dssp HHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTT---SEEEEEETSS
T ss_pred HHHHHHhcCCCceEEEEeCCHHHHHHHHHHHHHCC--CCEEEEEECCC
Confidence 44566778898888888877665 455567788 99999999754
No 343
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=27.85 E-value=1.7e+02 Score=24.97 Aligned_cols=41 Identities=22% Similarity=0.332 Sum_probs=31.0
Q ss_pred CeEEEEEEcCCCCcchHHHHHHHHHHHHHhhhCCcEEEEEeCC
Q 029880 100 GVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVG 142 (186)
Q Consensus 100 g~vvLvffr~~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~d 142 (186)
+..|||+|....++.|..--..|..+..+|.. +.++-|...
T Consensus 146 ~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp~--vKFvkI~a~ 186 (265)
T PF02114_consen 146 STWVVVHIYEPGFPRCEIMNSCLECLARKYPE--VKFVKIRAS 186 (265)
T ss_dssp T-EEEEEEE-TTSCCHHHHHHHHHHHHHH-TT--SEEEEEEEC
T ss_pred CcEEEEEEEeCCCchHHHHHHHHHHHHHhCCc--eEEEEEehh
Confidence 47889999999999999999999998887754 666666554
No 344
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=27.85 E-value=1.8e+02 Score=21.96 Aligned_cols=45 Identities=13% Similarity=0.173 Sum_probs=27.9
Q ss_pred EEEEcCCCCcchHHHHHHHHHHHHHhhhCCcEEEEEeC--C--CHHHHHHHHHHhC
Q 029880 104 VALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGV--G--TPNKAQILAERVG 155 (186)
Q Consensus 104 Lvffr~~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~--d--~~e~~~~f~~~~~ 155 (186)
+.+|....|.-|++...-|. ++|+.+-.+.. + +.++++.|.++.|
T Consensus 3 i~iY~~p~Cst~RKA~~~L~-------~~gi~~~~~d~~~~p~t~~eL~~~l~~~g 51 (126)
T TIGR01616 3 IIFYEKPGCANNARQKAALK-------ASGHDVEVQDILKEPWHADTLRPYFGNKP 51 (126)
T ss_pred EEEEeCCCCHHHHHHHHHHH-------HCCCCcEEEeccCCCcCHHHHHHHHHHcC
Confidence 45677889999998775554 44555555443 2 3455666666554
No 345
>TIGR01544 HAD-SF-IE haloacid dehalogenase superfamily, subfamily IE hydrolase, TIGR01544. This group of sequences was found during searches for members of the haloacid dehalogenase (HAD) superfamily. All of the conserved catalytic motifs are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches (IA, TIGR01493, TIGR01509, TIGR01549; IB, TIGR01488; IC, TIGR01494; ID, TIGR01658; IF TIGR01545) of that subfamily as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.
Probab=27.78 E-value=1.3e+02 Score=26.01 Aligned_cols=35 Identities=9% Similarity=0.194 Sum_probs=30.1
Q ss_pred HHHHHHHHhhhCCcEEEEEeCCCHHHHHHHHHHhC
Q 029880 121 ALKESKARFDSAGVKLIAVGVGTPNKAQILAERVG 155 (186)
Q Consensus 121 ~L~~l~~ef~~~Gv~vVaIs~d~~e~~~~f~~~~~ 155 (186)
.+.++.+.+++.|+.++.+|.+-...+....++.+
T Consensus 125 G~~efl~~L~~~GIpv~IvS~G~~~~Ie~vL~~lg 159 (277)
T TIGR01544 125 GYENFFDKLQQHSIPVFIFSAGIGNVLEEVLRQAG 159 (277)
T ss_pred CHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHHcC
Confidence 34456788899999999999999999999999888
No 346
>TIGR00035 asp_race aspartate racemase.
Probab=27.73 E-value=1.2e+02 Score=24.74 Aligned_cols=43 Identities=21% Similarity=0.382 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHhhhCCcEEEEEeCCCHHH-HHHHHHHhCCeeeeEEEE
Q 029880 118 LASALKESKARFDSAGVKLIAVGVGTPNK-AQILAERVGNVFITQVLS 164 (186)
Q Consensus 118 el~~L~~l~~ef~~~Gv~vVaIs~d~~e~-~~~f~~~~~~~l~fpvL~ 164 (186)
-.+.+.+..+.+++.|+++|+|.+++... +.+..+..+ .|++.
T Consensus 60 ~~~~l~~~~~~L~~~g~d~iviaCNTah~~~~~l~~~~~----iPii~ 103 (229)
T TIGR00035 60 PRPILIDIAVKLENAGADFIIMPCNTAHKFAEDIQKAIG----IPLIS 103 (229)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECCccHHHHHHHHHHhCC----CCEec
Confidence 55677888888999999999999998765 455555555 45553
No 347
>PF01106 NifU: NifU-like domain; InterPro: IPR001075 Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron. These functions depend on the various FeS cluster prosthetic groups, the most common being [2Fe-2S] and [4Fe-4S] []. FeS cluster assembly is a complex process involving the mobilisation of Fe and S atoms from storage sources, their assembly into [Fe-S] form, their transport to specific cellular locations, and their transfer to recipient apoproteins. So far, three FeS assembly machineries have been identified, which are capable of synthesising all types of [Fe-S] clusters: ISC (iron-sulphur cluster), SUF (sulphur assimilation), and NIF (nitrogen fixation) systems. The ISC system is conserved in eubacteria and eukaryotes (mitochondria), and has broad specificity, targeting general FeS proteins [, ]. It is encoded by the isc operon (iscRSUA-hscBA-fdx-iscX). IscS is a cysteine desulphurase, which obtains S from cysteine (converting it to alanine) and serves as a S donor for FeS cluster assembly. IscU and IscA act as scaffolds to accept S and Fe atoms, assembling clusters and transfering them to recipient apoproteins. HscA is a molecular chaperone and HscB is a co-chaperone. Fdx is a [2Fe-2S]-type ferredoxin. IscR is a transcription factor that regulates expression of the isc operon. IscX (also known as YfhJ) appears to interact with IscS and may function as an Fe donor during cluster assembly []. The SUF system is an alternative pathway to the ISC system that operates under iron starvation and oxidative stress. It is found in eubacteria, archaea and eukaryotes (plastids). The SUF system is encoded by the suf operon (sufABCDSE), and the six encoded proteins are arranged into two complexes (SufSE and SufBCD) and one protein (SufA). SufS is a pyridoxal-phosphate (PLP) protein displaying cysteine desulphurase activity. SufE acts as a scaffold protein that accepts S from SufS and donates it to SufA []. SufC is an ATPase with an unorthodox ATP-binding cassette (ABC)-like component. No specific functions have been assigned to SufB and SufD. SufA is homologous to IscA [], acting as a scaffold protein in which Fe and S atoms are assembled into [FeS] cluster forms, which can then easily be transferred to apoproteins targets. In the NIF system, NifS and NifU are required for the formation of metalloclusters of nitrogenase in Azotobacter vinelandii, and other organisms, as well as in the maturation of other FeS proteins. Nitrogenase catalyses the fixation of nitrogen. It contains a complex cluster, the FeMo cofactor, which contains molybdenum, Fe and S. NifS is a cysteine desulphurase. NifU binds one Fe atom at its N-terminal, assembling an FeS cluster that is transferred to nitrogenase apoproteins []. Nif proteins involved in the formation of FeS clusters can also be found in organisms that do not fix nitrogen []. This entry represents the C-terminal of NifU and homologous proteins. NifU contains two domains: an N-terminal (IPR002871 from INTERPRO) and a C-terminal domain []. These domains exist either together or on different polypeptides, both domains being found in organisms that do not fix nitrogen (e.g. yeast), so they have a broader significance in the cell than nitrogen fixation. ; GO: 0005506 iron ion binding, 0051536 iron-sulfur cluster binding, 0016226 iron-sulfur cluster assembly; PDB: 2JNV_A 2Z51_A 1TH5_A 1VEH_A 1XHJ_A.
Probab=27.71 E-value=1.9e+02 Score=19.31 Aligned_cols=32 Identities=25% Similarity=0.226 Sum_probs=20.0
Q ss_pred CCCCEEecccccccCCCeEEEEEEcCC--CCcchHHHH
Q 029880 84 AAGEPVLFKDLWDQNEGVAVVALLRHF--GCPCCWELA 119 (186)
Q Consensus 84 ~~G~~vsLsdl~~~~~g~vvLvffr~~--wCp~C~~el 119 (186)
.+|..+.|-++. +..|.+-|-+. +||....-+
T Consensus 14 ~dGGdv~lv~v~----~~~V~V~l~GaC~gC~~s~~Tl 47 (68)
T PF01106_consen 14 SDGGDVELVDVD----DGVVYVRLTGACSGCPSSDMTL 47 (68)
T ss_dssp HTTEEEEEEEEE----TTEEEEEEESSCCSSCCHHHHH
T ss_pred hcCCcEEEEEec----CCEEEEEEEeCCCCCCCHHHHH
Confidence 478889999984 34666666443 444444444
No 348
>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672. Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.
Probab=27.67 E-value=65 Score=27.07 Aligned_cols=86 Identities=10% Similarity=-0.044 Sum_probs=52.5
Q ss_pred CCeEEECCCCCEEecccccccCCCeEE------E----EEEcCCCCcchHHH-HHH--HHHHHHHhhhCCcEEEEEeCC-
Q 029880 77 GDFSIFTAAGEPVLFKDLWDQNEGVAV------V----ALLRHFGCPCCWEL-ASA--LKESKARFDSAGVKLIAVGVG- 142 (186)
Q Consensus 77 Pdf~L~d~~G~~vsLsdl~~~~~g~vv------L----vffr~~wCp~C~~e-l~~--L~~l~~ef~~~Gv~vVaIs~d- 142 (186)
|---+.|.||..++-+.... .|... - --||..|+-.|..+ .+. ..++.+.++++|+.+..|+.-
T Consensus 63 p~aViFDlDgTLlDSs~~~~--~G~~~~s~~~~~~l~g~~~w~~~~~~~~~~s~p~~~a~elL~~l~~~G~~i~iVTnr~ 140 (237)
T TIGR01672 63 PIAVSFDIDDTVLFSSPGFW--RGKKTFSPGSEDYLKNQVFWEKVNNGWDEFSIPKEVARQLIDMHQRRGDAIFFVTGRT 140 (237)
T ss_pred CeEEEEeCCCccccCcHHHh--CCcccCCHHHhhhhcChHHHHHHHHhcccCCcchhHHHHHHHHHHHCCCEEEEEeCCC
Confidence 54567799998888777421 11110 0 02455555554322 233 667788889999999999876
Q ss_pred ---CHHHHHHHHHHhCCeeeeEEEE
Q 029880 143 ---TPNKAQILAERVGNVFITQVLS 164 (186)
Q Consensus 143 ---~~e~~~~f~~~~~~~l~fpvL~ 164 (186)
....++...+.+|++-.|+++.
T Consensus 141 ~~k~~~~a~~ll~~lGi~~~f~~i~ 165 (237)
T TIGR01672 141 PGKTDTVSKTLAKNFHIPAMNPVIF 165 (237)
T ss_pred CCcCHHHHHHHHHHhCCchheeEEE
Confidence 3445777888888322356654
No 349
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=27.62 E-value=1e+02 Score=24.38 Aligned_cols=36 Identities=22% Similarity=0.352 Sum_probs=26.6
Q ss_pred HHHHHHHHHhhhCCcEEEEEeCCCHHHHHHHHHHhC
Q 029880 120 SALKESKARFDSAGVKLIAVGVGTPNKAQILAERVG 155 (186)
Q Consensus 120 ~~L~~l~~ef~~~Gv~vVaIs~d~~e~~~~f~~~~~ 155 (186)
|.+.++..+++++|+.+..++.+....+....++.+
T Consensus 97 ~g~~~~L~~L~~~g~~~~i~Tn~~~~~~~~~l~~~~ 132 (221)
T TIGR02253 97 PGVRDTLMELRESGYRLGIITDGLPVKQWEKLERLG 132 (221)
T ss_pred CCHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHhCC
Confidence 355566677778888888888887777777777777
No 350
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=27.61 E-value=2.1e+02 Score=20.13 Aligned_cols=32 Identities=25% Similarity=0.322 Sum_probs=25.4
Q ss_pred CCcEEEEEeCCCHHHHHHHHHHhCCeeeeEEEEcCC
Q 029880 132 AGVKLIAVGVGTPNKAQILAERVGNVFITQVLSLPL 167 (186)
Q Consensus 132 ~Gv~vVaIs~d~~e~~~~f~~~~~~~l~fpvL~Dp~ 167 (186)
.++++++|...+.+..++++++++ ++ .+.|.+
T Consensus 24 ~~~~v~~v~d~~~~~~~~~~~~~~--~~--~~~~~~ 55 (120)
T PF01408_consen 24 PDFEVVAVCDPDPERAEAFAEKYG--IP--VYTDLE 55 (120)
T ss_dssp TTEEEEEEECSSHHHHHHHHHHTT--SE--EESSHH
T ss_pred CCcEEEEEEeCCHHHHHHHHHHhc--cc--chhHHH
Confidence 467999998889999999999999 54 665543
No 351
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=27.60 E-value=4.3e+02 Score=24.14 Aligned_cols=65 Identities=20% Similarity=0.092 Sum_probs=41.5
Q ss_pred CeEEEEEEcCCCCcc-------hHHHHHHHHHHHHHhhhCCcEEEEEeCC---------CHHHHHHHHHHhCCeeeeEEE
Q 029880 100 GVAVVALLRHFGCPC-------CWELASALKESKARFDSAGVKLIAVGVG---------TPNKAQILAERVGNVFITQVL 163 (186)
Q Consensus 100 g~vvLvffr~~wCp~-------C~~el~~L~~l~~ef~~~Gv~vVaIs~d---------~~e~~~~f~~~~~~~l~fpvL 163 (186)
+++|-+.++ .|.++ ...+...+.++.+.+.++|.+|+.++.- +....++..+..+..-.+-++
T Consensus 234 ~~~Vgisvr-~~~~~~~~~~~~~~~Y~~~la~~i~~Li~~g~~Vv~lp~~~~~~~~~~dD~~~~~~l~~~~~~~~~~~vi 312 (426)
T PRK10017 234 QKTVAITLR-ELAPFDKRLGTTQQAYEKAFAGVVNRIIDEGYQVIALSTCTGIDSYNKDDRMVALNLRQHVSDPARYHVV 312 (426)
T ss_pred CCEEEEEec-ccccccccccccHHHHHHHHHHHHHHHHHCCCeEEEEecccCccCCCCchHHHHHHHHHhcccccceeEe
Confidence 466666665 56643 5667788888888888889999988852 233356666665411234455
Q ss_pred Ec
Q 029880 164 SL 165 (186)
Q Consensus 164 ~D 165 (186)
.|
T Consensus 313 ~~ 314 (426)
T PRK10017 313 MD 314 (426)
T ss_pred cC
Confidence 44
No 352
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=27.58 E-value=1.4e+02 Score=21.28 Aligned_cols=45 Identities=13% Similarity=0.059 Sum_probs=31.6
Q ss_pred HHHHHHHHHHhhhCCcEEEEEeCCCHHHHHHHHHHhCCeeeeEEEEcCCC
Q 029880 119 ASALKESKARFDSAGVKLIAVGVGTPNKAQILAERVGNVFITQVLSLPLE 168 (186)
Q Consensus 119 l~~L~~l~~ef~~~Gv~vVaIs~d~~e~~~~f~~~~~~~l~fpvL~Dp~~ 168 (186)
..++.+..+..+++|+.+|+|.......+.+++ . +.+.+-.+++.
T Consensus 66 ~~~~~~~~~~ak~~g~~vi~iT~~~~~~l~~~a---d--~~l~~~~~~~~ 110 (131)
T PF01380_consen 66 TRELIELLRFAKERGAPVILITSNSESPLARLA---D--IVLYIPTGEES 110 (131)
T ss_dssp THHHHHHHHHHHHTTSEEEEEESSTTSHHHHHS---S--EEEEEESSCGS
T ss_pred chhhhhhhHHHHhcCCeEEEEeCCCCCchhhhC---C--EEEEecCCCcc
Confidence 355566666778899999999987766665554 4 66777666554
No 353
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=27.55 E-value=1.7e+02 Score=24.36 Aligned_cols=45 Identities=13% Similarity=0.214 Sum_probs=33.8
Q ss_pred HHHHHHHhhhCCcEEEEEeCCCHHHHHHHHHHhCCeeeeEEEEcCCC
Q 029880 122 LKESKARFDSAGVKLIAVGVGTPNKAQILAERVGNVFITQVLSLPLE 168 (186)
Q Consensus 122 L~~l~~ef~~~Gv~vVaIs~d~~e~~~~f~~~~~~~l~fpvL~Dp~~ 168 (186)
..+...+++++|+.++.++.-....+..+.++.+ +.-++++....
T Consensus 26 ~~~ai~~l~~~Gi~~~iaTgR~~~~~~~~~~~l~--l~~~~i~~nGa 70 (273)
T PRK00192 26 AKPALKALKEKGIPVIPCTSKTAAEVEVLRKELG--LEDPFIVENGA 70 (273)
T ss_pred HHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcC--CCCCEEEEcCc
Confidence 4455667788999999888888888999999998 65455554443
No 354
>PRK08244 hypothetical protein; Provisional
Probab=27.48 E-value=61 Score=29.52 Aligned_cols=36 Identities=19% Similarity=0.259 Sum_probs=27.8
Q ss_pred CCCCCCcCCeEEECCCCCEEecccccccCCCeEEEEEE
Q 029880 70 ANVGDLLGDFSIFTAAGEPVLFKDLWDQNEGVAVVALL 107 (186)
Q Consensus 70 l~~G~~aPdf~L~d~~G~~vsLsdl~~~~~g~vvLvff 107 (186)
..+|..+|+..+...+|..++|.|+.+ ++..+|+.|
T Consensus 391 ~~~G~r~p~~~~~~~~~~~~~l~~~~~--~~~~~ll~~ 426 (493)
T PRK08244 391 PLNGKRLPDLELTLSDGESERLYSLLH--KGTFLLLSF 426 (493)
T ss_pred CCCCCCCCCcceecCCCCceeHHHhhc--CCeEEEEEe
Confidence 468999999999877888889999875 444555555
No 355
>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase. One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.
Probab=27.31 E-value=1.2e+02 Score=28.49 Aligned_cols=39 Identities=15% Similarity=0.239 Sum_probs=33.2
Q ss_pred HHHHHHHHHHhhhCCcEEEEEeCCCHHHHHHHHHHhCCeee
Q 029880 119 ASALKESKARFDSAGVKLIAVGVGTPNKAQILAERVGNVFI 159 (186)
Q Consensus 119 l~~L~~l~~ef~~~Gv~vVaIs~d~~e~~~~f~~~~~~~l~ 159 (186)
-|...+..+++++.|++++.++.++...++..++++| ++
T Consensus 407 ~~~a~e~i~~Lk~~Gi~v~ilSgd~~~~a~~ia~~lg--i~ 445 (562)
T TIGR01511 407 RPEAKEVIQALKRRGIEPVMLTGDNRKTAKAVAKELG--IN 445 (562)
T ss_pred cHHHHHHHHHHHHcCCeEEEEcCCCHHHHHHHHHHcC--Cc
Confidence 4566677788889999999999888999999999999 65
No 356
>cd01467 vWA_BatA_type VWA BatA type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses. In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=27.16 E-value=2.3e+02 Score=21.44 Aligned_cols=39 Identities=18% Similarity=0.221 Sum_probs=27.9
Q ss_pred HHhhhCCcEEEEEeCCC--------------HHHHHHHHHHhCCeeeeEEEEcCC
Q 029880 127 ARFDSAGVKLIAVGVGT--------------PNKAQILAERVGNVFITQVLSLPL 167 (186)
Q Consensus 127 ~ef~~~Gv~vVaIs~d~--------------~e~~~~f~~~~~~~l~fpvL~Dp~ 167 (186)
+..++.|+.|.+|..++ .+.+++.++..+ -.|-...|++
T Consensus 126 ~~~~~~gi~i~~i~ig~~~~~~~~~~~~~~~~~~l~~la~~tg--G~~~~~~~~~ 178 (180)
T cd01467 126 ELAKNKGVRIYTIGVGKSGSGPKPDGSTILDEDSLVEIADKTG--GRIFRALDGF 178 (180)
T ss_pred HHHHHCCCEEEEEEecCCCCCcCCCCcccCCHHHHHHHHHhcC--CEEEEecCcc
Confidence 34457788877777664 356889999988 7776677765
No 357
>cd03421 SirA_like_N SirA_like_N, a protein of unknown function with an N-terminal SirA-like domain. The SirA, YedF, YeeD protein family is present in bacteria as well as archaea. SirA (also known as UvrY, and YhhP) belongs to a family of a two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=27.03 E-value=1.8e+02 Score=18.81 Aligned_cols=49 Identities=16% Similarity=0.195 Sum_probs=26.8
Q ss_pred EEEcCCCCcchHHHHHHHHHHHHHhhhCCcEEEEEeCCC--HHHHHHHHHHhCCeeee
Q 029880 105 ALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGT--PNKAQILAERVGNVFIT 160 (186)
Q Consensus 105 vffr~~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~d~--~e~~~~f~~~~~~~l~f 160 (186)
+..|+.-||.-...+. .++ +... |-.+..+..+. .+.+..|+++.| +.+
T Consensus 2 lD~rG~~CP~P~l~~k--~al--~~~~-g~~l~v~~d~~~s~~~i~~~~~~~G--~~~ 52 (67)
T cd03421 2 IDARGLACPQPVIKTK--KAL--ELEA-GGEIEVLVDNEVAKENVSRFAESRG--YEV 52 (67)
T ss_pred cccCCCCCCHHHHHHH--HHH--hcCC-CCEEEEEEcChhHHHHHHHHHHHcC--CEE
Confidence 3457788887433221 122 3333 32333333333 367999999999 666
No 358
>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.
Probab=26.83 E-value=1.2e+02 Score=22.92 Aligned_cols=35 Identities=23% Similarity=0.304 Sum_probs=28.4
Q ss_pred HHHHHHHHhhhCCcEEEEEeCCCHHHHHHHHHHhC
Q 029880 121 ALKESKARFDSAGVKLIAVGVGTPNKAQILAERVG 155 (186)
Q Consensus 121 ~L~~l~~ef~~~Gv~vVaIs~d~~e~~~~f~~~~~ 155 (186)
.+.++.+.+++.|+.+..+|.+....++...+.++
T Consensus 76 g~~~ll~~l~~~g~~~~i~S~~~~~~~~~~l~~~~ 110 (188)
T TIGR01489 76 GFKEFIAFIKEHGIDFIVISDGNDFFIDPVLEGIG 110 (188)
T ss_pred cHHHHHHHHHHcCCcEEEEeCCcHHHHHHHHHHcC
Confidence 35556677788899999999988888888888887
No 359
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=26.73 E-value=1.9e+02 Score=22.48 Aligned_cols=25 Identities=20% Similarity=0.465 Sum_probs=22.3
Q ss_pred EEcCCCCcchHHHHHHHHHHHHHhh
Q 029880 106 LLRHFGCPCCWELASALKESKARFD 130 (186)
Q Consensus 106 ffr~~wCp~C~~el~~L~~l~~ef~ 130 (186)
+|.-+-||+|..-...|.++.+++.
T Consensus 3 ~~~D~~cP~cyl~~~~l~~~~~~~~ 27 (201)
T cd03024 3 IWSDVVCPWCYIGKRRLEKALAELG 27 (201)
T ss_pred EEecCcCccHHHHHHHHHHHHHhCC
Confidence 5678899999999999999998885
No 360
>PF12687 DUF3801: Protein of unknown function (DUF3801); InterPro: IPR024234 This functionally uncharacterised protein family is found in bacteria. Proteins found in this family are typically between 158 and 187 amino acids in length and include the PcfB protein.
Probab=26.68 E-value=1.3e+02 Score=24.67 Aligned_cols=37 Identities=16% Similarity=0.022 Sum_probs=31.2
Q ss_pred hCCcEEEEEeCCCHHHHHHHHHHhCCeeeeEEEEcCCCC
Q 029880 131 SAGVKLIAVGVGTPNKAQILAERVGNVFITQVLSLPLEV 169 (186)
Q Consensus 131 ~~Gv~vVaIs~d~~e~~~~f~~~~~~~l~fpvL~Dp~~~ 169 (186)
..++.+|-|..++.......+.++| +.|-++-|.+..
T Consensus 31 g~~l~~i~i~~~~lk~F~k~AkKyG--V~yav~kdk~~~ 67 (204)
T PF12687_consen 31 GKGLKNIEITDEDLKEFKKEAKKYG--VDYAVKKDKSTG 67 (204)
T ss_pred CCCceEEecCHhhHHHHHHHHHHcC--CceEEeeccCCC
Confidence 4467888888888888999999999 999999987654
No 361
>TIGR02765 crypto_DASH cryptochrome, DASH family. Photolyases and cryptochromes are related flavoproteins. Photolyases harness the energy of blue light to repair DNA damage by removing pyrimidine dimers. Cryptochromes do not repair DNA and are presumed to act instead in some other (possibly unknown) process such as entraining circadian rhythms. This model describes the cryptochrome DASH subfamily, one of at least five major subfamilies, which is found in plants, animals, marine bacteria, etc. Members of this family bind both folate and FAD. They may show weak photolyase activity in vitro but have not been shown to affect DNA repair in vivo. Rather, DASH family cryptochromes have been shown to bind RNA (Vibrio cholerae VC1814), or DNA, and seem likely to act in light-responsive regulatory processes.
Probab=26.60 E-value=1.2e+02 Score=27.31 Aligned_cols=37 Identities=16% Similarity=0.252 Sum_probs=28.3
Q ss_pred HHHHHHHHHHhhhCCcEEEEEeCCCHHHHHHHHHHhC
Q 029880 119 ASALKESKARFDSAGVKLIAVGVGTPNKAQILAERVG 155 (186)
Q Consensus 119 l~~L~~l~~ef~~~Gv~vVaIs~d~~e~~~~f~~~~~ 155 (186)
+..|.++.+++++.|+.++....+..+.+.+++++++
T Consensus 60 ~esL~~L~~~L~~~g~~L~v~~G~~~~vl~~L~~~~~ 96 (429)
T TIGR02765 60 LESLKDLRTSLRKLGSDLLVRSGKPEDVLPELIKELG 96 (429)
T ss_pred HHHHHHHHHHHHHcCCCeEEEeCCHHHHHHHHHHHhC
Confidence 3577888888888898888876666666777777776
No 362
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=26.44 E-value=3e+02 Score=22.47 Aligned_cols=35 Identities=14% Similarity=0.120 Sum_probs=27.6
Q ss_pred HHHHHHHHhhhCCcEEEEEeCCCHHHHHHHHHHhC
Q 029880 121 ALKESKARFDSAGVKLIAVGVGTPNKAQILAERVG 155 (186)
Q Consensus 121 ~L~~l~~ef~~~Gv~vVaIs~d~~e~~~~f~~~~~ 155 (186)
.-.+...+++++|+.|+..+.-....++.+.++.+
T Consensus 24 ~~~~ai~~l~~~G~~~~iaTGR~~~~~~~~~~~l~ 58 (270)
T PRK10513 24 AVKQAIAAARAKGVNVVLTTGRPYAGVHRYLKELH 58 (270)
T ss_pred HHHHHHHHHHHCCCEEEEecCCChHHHHHHHHHhC
Confidence 34456677888999888777777888888999888
No 363
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=25.54 E-value=3.3e+02 Score=24.62 Aligned_cols=60 Identities=15% Similarity=0.123 Sum_probs=38.5
Q ss_pred eEEEEEEcCCCCcchHHHHHHHHHHHHHhhhCCcEEEEEeCCCHHHHHHHHH-HhCCeeeeEEEEcC
Q 029880 101 VAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKAQILAE-RVGNVFITQVLSLP 166 (186)
Q Consensus 101 ~vvLvffr~~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~d~~e~~~~f~~-~~~~~l~fpvL~Dp 166 (186)
|+++--.+.+-...-..-+.. ..+++..|.++|=|++.+.+.+.++.+ +.. ++.|++.|-
T Consensus 21 PI~VQSMTnT~T~Dv~aTv~Q----I~~L~~aG~dIVRvtv~~~e~A~A~~~Ik~~--~~vPLVaDi 81 (361)
T COG0821 21 PIVVQSMTNTDTADVEATVAQ----IKALERAGCDIVRVTVPDMEAAEALKEIKQR--LNVPLVADI 81 (361)
T ss_pred ceEEEeccCCCcccHHHHHHH----HHHHHHcCCCEEEEecCCHHHHHHHHHHHHh--CCCCEEEEe
Confidence 666666655555433333322 345677999999999999887666653 333 468888874
No 364
>cd08573 GDPD_GDE1 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE1 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE1 (also known as MIR16, membrane interacting protein of RGS16) and their metazoan homologs. GDE1 is widely expressed in mammalian tissues, including the heart, brain, liver, and kidney. It shows sequence homology to bacterial glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), which catalyzes the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. GDE1 has been characterized as GPI-GDE (EC 3.1.4.44) that selectively hydrolyzes extracellular glycerophosphoinositol (GPI) to generate glycerol phosphate and inositol. It functions as an integral membrane-bound glycoprotein interacting with regulator of G protein signaling protein RGS16, and is modulated by G
Probab=25.29 E-value=1.8e+02 Score=24.35 Aligned_cols=38 Identities=21% Similarity=0.319 Sum_probs=26.6
Q ss_pred HHHHHhhhCCcEEEEEeCCCHHHHHHHHHHhCCeeeeEEEEc
Q 029880 124 ESKARFDSAGVKLIAVGVGTPNKAQILAERVGNVFITQVLSL 165 (186)
Q Consensus 124 ~l~~ef~~~Gv~vVaIs~d~~e~~~~f~~~~~~~l~fpvL~D 165 (186)
++.+++++.|+.|.+=.+++++.++.+.+..| +. ++.|
T Consensus 219 ~~v~~~~~~G~~v~vWTVn~~~~~~~l~~~~G--Vd--iiTD 256 (258)
T cd08573 219 AYVRYWRARGIRVIAWTVNTPTEKQYFAKTLN--VP--YITD 256 (258)
T ss_pred HHHHHHHHCCCEEEEEecCCHHHHHHHHHHhC--CC--eecC
Confidence 34556677788888878888777777776577 65 5655
No 365
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=25.19 E-value=65 Score=23.25 Aligned_cols=56 Identities=13% Similarity=0.131 Sum_probs=34.4
Q ss_pred CCCCcchHHHHHHHHHHHHHhhhCCcEEEEEeCCC----HHHHHHHHHHhCCeeeeEEEEcCCCCcccc
Q 029880 109 HFGCPCCWELASALKESKARFDSAGVKLIAVGVGT----PNKAQILAERVGNVFITQVLSLPLEVTPSL 173 (186)
Q Consensus 109 ~~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~d~----~e~~~~f~~~~~~~l~fpvL~Dp~~~~~~~ 173 (186)
...|.-|++.+.. ++++|+.+..|..-. .+++.++.+..| ..+.-|.+..+...+.
T Consensus 3 ~~~C~t~rka~~~-------L~~~gi~~~~~d~~k~p~s~~el~~~l~~~~--~~~~~lin~~~~~~k~ 62 (110)
T PF03960_consen 3 NPNCSTCRKALKW-------LEENGIEYEFIDYKKEPLSREELRELLSKLG--NGPDDLINTRSKTYKE 62 (110)
T ss_dssp -TT-HHHHHHHHH-------HHHTT--EEEEETTTS---HHHHHHHHHHHT--SSGGGGB-TTSHHHHH
T ss_pred CCCCHHHHHHHHH-------HHHcCCCeEeehhhhCCCCHHHHHHHHHHhc--ccHHHHhcCccchHhh
Confidence 4578888876644 456788888887753 467889999888 6665555555544433
No 366
>TIGR01522 ATPase-IIA2_Ca golgi membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1 the former of which is modelled by TIGR01116.
Probab=24.56 E-value=1.4e+02 Score=29.90 Aligned_cols=36 Identities=25% Similarity=0.438 Sum_probs=31.4
Q ss_pred HHHHHHHHHhhhCCcEEEEEeCCCHHHHHHHHHHhC
Q 029880 120 SALKESKARFDSAGVKLIAVGVGTPNKAQILAERVG 155 (186)
Q Consensus 120 ~~L~~l~~ef~~~Gv~vVaIs~d~~e~~~~f~~~~~ 155 (186)
+...+..++++++|++++.|+.|+.+.++..+++.|
T Consensus 531 ~~~~~~i~~l~~~Gi~v~miTGD~~~tA~~ia~~~G 566 (884)
T TIGR01522 531 PGVKEAVTTLITGGVRIIMITGDSQETAVSIARRLG 566 (884)
T ss_pred hHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcC
Confidence 345566677889999999999999999999999999
No 367
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=24.17 E-value=1.4e+02 Score=23.50 Aligned_cols=37 Identities=27% Similarity=0.265 Sum_probs=29.2
Q ss_pred HHHHHHHHHHhhhCCcEEEEEeCCCHHHHHHHHHHhC
Q 029880 119 ASALKESKARFDSAGVKLIAVGVGTPNKAQILAERVG 155 (186)
Q Consensus 119 l~~L~~l~~ef~~~Gv~vVaIs~d~~e~~~~f~~~~~ 155 (186)
.+.+.++...+++.|+.++.++.+..+.++...++++
T Consensus 95 ~~g~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l~~~~ 131 (226)
T PRK13222 95 YPGVKETLAALKAAGYPLAVVTNKPTPFVAPLLEALG 131 (226)
T ss_pred CCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcC
Confidence 3556666777778899998889888788888888887
No 368
>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]
Probab=24.10 E-value=1.4e+02 Score=27.50 Aligned_cols=34 Identities=21% Similarity=0.347 Sum_probs=24.6
Q ss_pred hhhCCcEEEEEeCCCH----------HHHHHHHHHhCCeeeeEEEEcC
Q 029880 129 FDSAGVKLIAVGVGTP----------NKAQILAERVGNVFITQVLSLP 166 (186)
Q Consensus 129 f~~~Gv~vVaIs~d~~----------e~~~~f~~~~~~~l~fpvL~Dp 166 (186)
.+++-+.+|.|+++++ +++.+++++++ ++|++|+
T Consensus 196 ~DENT~AivviNP~NPcGnVys~~HL~kiae~A~klg----i~vIaDE 239 (447)
T KOG0259|consen 196 ADENTVAIVVINPNNPCGNVYSEDHLKKIAETAKKLG----IMVIADE 239 (447)
T ss_pred hccCeeEEEEeCCCCCCcccccHHHHHHHHHHHHHhC----CeEEehh
Confidence 3455577888888764 35677788888 7888885
No 369
>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase. .
Probab=23.94 E-value=1.4e+02 Score=27.87 Aligned_cols=37 Identities=19% Similarity=0.293 Sum_probs=32.6
Q ss_pred HHHHHHHHHHhhhCCc-EEEEEeCCCHHHHHHHHHHhC
Q 029880 119 ASALKESKARFDSAGV-KLIAVGVGTPNKAQILAERVG 155 (186)
Q Consensus 119 l~~L~~l~~ef~~~Gv-~vVaIs~d~~e~~~~f~~~~~ 155 (186)
-+...+..++++++|+ ++..++.++...++..+++.|
T Consensus 364 ~~~~~e~i~~L~~~Gi~~v~vvTgd~~~~a~~i~~~lg 401 (536)
T TIGR01512 364 RPDAAEAIAELKALGIEKVVMLTGDRRAVAERVARELG 401 (536)
T ss_pred hHHHHHHHHHHHHcCCCcEEEEcCCCHHHHHHHHHHcC
Confidence 4667777888899999 999999999999999999999
No 370
>PRK13600 putative ribosomal protein L7Ae-like; Provisional
Probab=23.82 E-value=1.2e+02 Score=21.50 Aligned_cols=53 Identities=8% Similarity=0.025 Sum_probs=35.9
Q ss_pred HHHHHHHhhhCCcEEEEEeCCCH----HHHHHHHHHhCCeeeeEEEEcCCCCcccceeec
Q 029880 122 LKESKARFDSAGVKLIAVGVGTP----NKAQILAERVGNVFITQVLSLPLEVTPSLFKFH 177 (186)
Q Consensus 122 L~~l~~ef~~~Gv~vVaIs~d~~----e~~~~f~~~~~~~l~fpvL~Dp~~~~~~~f~~~ 177 (186)
.++..+.++...+.+|.|..|.. +.+...+++++ ++| ++.|....+.+.+|++
T Consensus 18 ~kqt~Kai~kg~~~~v~iA~Da~~~vv~~l~~lceek~--Ip~-v~V~s~~~LGkAcgi~ 74 (84)
T PRK13600 18 LKETLKALKKDQVTSLIIAEDVEVYLMTRVLSQINQKN--IPV-SFFKSKHALGKHVGIN 74 (84)
T ss_pred HHHHHHHHhcCCceEEEEeCCCCHHHHHHHHHHHHHcC--CCE-EEECCHHHHHHHhCCC
Confidence 45556667666667777766643 34788899999 777 5556666666666665
No 371
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=23.82 E-value=1.6e+02 Score=18.91 Aligned_cols=57 Identities=18% Similarity=0.146 Sum_probs=32.7
Q ss_pred EEEEcCCCCcchHHHHHHHHHHHHHhhhCCcEEEEEeCCCHH-HHHHHHHHhCCee-eeEEEEcCC
Q 029880 104 VALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPN-KAQILAERVGNVF-ITQVLSLPL 167 (186)
Q Consensus 104 Lvffr~~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~d~~e-~~~~f~~~~~~~l-~fpvL~Dp~ 167 (186)
+.+|....||.|++-.-.|.+.. ..+.++.|.....+ .-..|.+.+. . ..|+|.|.+
T Consensus 2 ~~Ly~~~~s~~s~~v~~~l~~~~-----i~~~~~~~~~~~~~~~~~~~~~~~P--~~~vP~l~~~g 60 (76)
T cd03053 2 LKLYGAAMSTCVRRVLLCLEEKG-----VDYELVPVDLTKGEHKSPEHLARNP--FGQIPALEDGD 60 (76)
T ss_pred eEEEeCCCChhHHHHHHHHHHcC-----CCcEEEEeCccccccCCHHHHhhCC--CCCCCEEEECC
Confidence 45666778999988776665532 22455555543222 2234555544 3 478888754
No 372
>PF01297 TroA: Periplasmic solute binding protein family; InterPro: IPR006127 This is a family of ABC transporter metal-binding lipoproteins. An example is the periplasmic zinc-binding protein TroA P96116 from SWISSPROT that interacts with an ATP-binding cassette transport system in Treponema pallidum and plays a role in the transport of zinc across the cytoplasmic membrane. Related proteins are found in both Gram-positive and Gram-negative bacteria. ; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2PS9_A 2PS0_A 2OSV_A 2OGW_A 2PS3_A 2PRS_B 3MFQ_C 3GI1_B 2OV3_A 1PQ4_A ....
Probab=23.79 E-value=1.3e+02 Score=24.86 Aligned_cols=46 Identities=26% Similarity=0.189 Sum_probs=31.2
Q ss_pred HHHHHHHHHHhhhCCcEEEEEeCCCHH-HHHHHHHHhCCeeeeEEEEcCC
Q 029880 119 ASALKESKARFDSAGVKLIAVGVGTPN-KAQILAERVGNVFITQVLSLPL 167 (186)
Q Consensus 119 l~~L~~l~~ef~~~Gv~vVaIs~d~~e-~~~~f~~~~~~~l~fpvL~Dp~ 167 (186)
...|.++.+.+++.|+.+|........ .++..+++.| ++. +..|+-
T Consensus 185 ~~~l~~l~~~ik~~~v~~i~~e~~~~~~~~~~la~~~g--~~v-v~ld~l 231 (256)
T PF01297_consen 185 PKDLAELIKLIKENKVKCIFTEPQFSSKLAEALAKETG--VKV-VYLDPL 231 (256)
T ss_dssp HHHHHHHHHHHHHTT-SEEEEETTS-THHHHHHHHCCT---EE-EESSTT
T ss_pred HHHHHHHHHHhhhcCCcEEEecCCCChHHHHHHHHHcC--CcE-EEeCCC
Confidence 446666777788899998888877654 4777778888 666 556654
No 373
>PF02244 Propep_M14: Carboxypeptidase activation peptide; InterPro: IPR003146 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. The peptidases are synthesised as inactive molecules, zymogens, with propeptides that must be removed by proteolytic cleavage to activate the enzyme. Structural studies of carboxypeptidases A and B reveal the propeptide to exist as a globular domain, followed by an extended alpha-helix; this shields the catalytic site, without specifically binding to it, while the substrate-binding site is blocked by making specific contacts [, ]. Members of this propeptide family are found in the metallocarboxypeptidases: A1, A2 [], A3, A4, A5, A6, U, insect gut carboxypeptidase and B [], and and are associated with peptidases belonging to MEROPS peptidase family M14A. Carboxypeptidases are found in abundance in pancreatic secretions. The pro-segment moiety (activation peptide) accounts for up to a quarter of the total length of the peptidase.; GO: 0004180 carboxypeptidase activity, 0006508 proteolysis; PDB: 3D68_C 3D67_B 3D66_A 1PBA_A 3GLJ_A 1NSA_A 1KWM_A 2BOA_B 1PYT_A 1JQG_A ....
Probab=23.70 E-value=1.4e+02 Score=19.67 Aligned_cols=30 Identities=17% Similarity=0.021 Sum_probs=23.7
Q ss_pred EEEEEeCCCHHHHHHHHHHhCCeeeeEEEEcC
Q 029880 135 KLIAVGVGTPNKAQILAERVGNVFITQVLSLP 166 (186)
Q Consensus 135 ~vVaIs~d~~e~~~~f~~~~~~~l~fpvL~Dp 166 (186)
.=|.|.+...+....+.++.+ +.|.++.|.
T Consensus 36 ~dv~V~p~~~~~f~~~L~~~~--i~~~v~i~d 65 (74)
T PF02244_consen 36 VDVMVPPEKLEEFEELLKEHG--IEYEVLIED 65 (74)
T ss_dssp EEEEEEGGGHHHHHHHHHHTT---EEEEEES-
T ss_pred EEEEECHHHHHHHHHHHHHCC--CcEEEEeHH
Confidence 346677888889999999999 999998874
No 374
>PRK04247 hypothetical protein; Provisional
Probab=23.66 E-value=4.6e+02 Score=22.29 Aligned_cols=78 Identities=18% Similarity=0.109 Sum_probs=52.5
Q ss_pred CCCEEecccccccCCCeEEEEEEcCC-CCcchHHHHHHHHHHHHHhhhCCcEEEEEeCCCHHHHHHHHHHhCCeeeeEEE
Q 029880 85 AGEPVLFKDLWDQNEGVAVVALLRHF-GCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKAQILAERVGNVFITQVL 163 (186)
Q Consensus 85 ~G~~vsLsdl~~~~~g~vvLvffr~~-wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~d~~e~~~~f~~~~~~~l~fpvL 163 (186)
.+..+++-..- ..|..|+|-+-.. .-..-..|+-.+.+.+.+-..+.|..|.|..+=.++++.++++.| +.|-.|
T Consensus 158 ~~G~IDila~D--~~G~lViVEvKrr~~~~~~V~Ql~rY~~~~~~~~~~~VRGilvAp~i~~~A~~ll~~~G--le~~~l 233 (238)
T PRK04247 158 PAGIIDILGRD--KDGNLVVLELKRRRAGLSAVSQLKRYVEALRELHGDKVRGILVAPSITDRARRLLEKEG--LEFVKL 233 (238)
T ss_pred CCCceeEEEEC--CCCCEEEEEEEEccCChhHHHHHHHHHHHHHhhcCCCcEEEEECCcCCHHHHHHHHHcC--CeEEEe
Confidence 34466664442 2456777776554 345555666666555544444678889999998999999999999 999666
Q ss_pred EcC
Q 029880 164 SLP 166 (186)
Q Consensus 164 ~Dp 166 (186)
.-+
T Consensus 234 ~p~ 236 (238)
T PRK04247 234 EPP 236 (238)
T ss_pred cCC
Confidence 543
No 375
>PRK13601 putative L7Ae-like ribosomal protein; Provisional
Probab=23.51 E-value=1.1e+02 Score=21.51 Aligned_cols=49 Identities=10% Similarity=0.070 Sum_probs=28.1
Q ss_pred HHHHHhhhCCcEEEEEeCCCHH----HHHHHHHHhCCeeeeEEEEcCCCCccccee
Q 029880 124 ESKARFDSAGVKLIAVGVGTPN----KAQILAERVGNVFITQVLSLPLEVTPSLFK 175 (186)
Q Consensus 124 ~l~~ef~~~Gv~vVaIs~d~~e----~~~~f~~~~~~~l~fpvL~Dp~~~~~~~f~ 175 (186)
+..+.++...+.+|.|..|..+ .+..+++.++ +|+ +.......+...-|
T Consensus 15 ~vlkaIk~gkakLViiA~Da~~~~~k~i~~~c~~~~--Vpv-~~~~t~~eLG~A~G 67 (82)
T PRK13601 15 QTLKAITNCNVLQVYIAKDAEEHVTKKIKELCEEKS--IKI-VYIDTMKELGVMCG 67 (82)
T ss_pred HHHHHHHcCCeeEEEEeCCCCHHHHHHHHHHHHhCC--CCE-EEeCCHHHHHHHHC
Confidence 3445556666777777777543 3556678888 777 33333333433333
No 376
>PLN02640 glucose-6-phosphate 1-dehydrogenase
Probab=23.46 E-value=3.7e+02 Score=25.86 Aligned_cols=69 Identities=10% Similarity=-0.016 Sum_probs=47.5
Q ss_pred CCCcCCeEEECCCCCEEecccccccCCCeEEEEEEcCCCCcchHHHHHHHHHHHHH-hhhCCcEEEEEeCCC
Q 029880 73 GDLLGDFSIFTAAGEPVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKAR-FDSAGVKLIAVGVGT 143 (186)
Q Consensus 73 G~~aPdf~L~d~~G~~vsLsdl~~~~~g~vvLvffr~~wCp~C~~el~~L~~l~~e-f~~~Gv~vVaIs~d~ 143 (186)
|.++-.++|+|-++..-.-..+. .+.+..||.|=|+|=-.-++.+|+|-.++.. .-..++.|||++..+
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~iVIFGATGDLA~RKL~PALy~L~~~g~Lp~~~~IIG~aR~~ 131 (573)
T PLN02640 62 GHPLNAVSLQDGENHLTEEHAEK--GESTLSITVVGASGDLAKKKIFPALFALFYEDWLPENFTVFGYARTK 131 (573)
T ss_pred CCcccceecccccccccHhhccC--CCCCeEEEEeCCccHhhhhhHHHHHHHHHHcCCCCCCCEEEEEECCC
Confidence 55555556654332222212222 2458899999999999999999999999854 445689999999864
No 377
>cd00859 HisRS_anticodon HisRS Histidyl-anticodon binding domain. HisRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=23.45 E-value=2.2e+02 Score=18.45 Aligned_cols=47 Identities=23% Similarity=0.092 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHhhhCCcEEEEEeCC-CHHHHHHHHHHhCCeeeeEEEEcC
Q 029880 118 LASALKESKARFDSAGVKLIAVGVG-TPNKAQILAERVGNVFITQVLSLP 166 (186)
Q Consensus 118 el~~L~~l~~ef~~~Gv~vVaIs~d-~~e~~~~f~~~~~~~l~fpvL~Dp 166 (186)
......++..+++..|+.+.....+ ......+++++.| +++-++.+.
T Consensus 13 ~~~~a~~i~~~Lr~~g~~v~~~~~~~~~~~~~~~a~~~~--~~~~i~i~~ 60 (91)
T cd00859 13 ALSEALELAEQLRDAGIKAEIDYGGRKLKKQFKYADRSG--ARFAVILGE 60 (91)
T ss_pred HHHHHHHHHHHHHHCCCEEEEecCCCCHHHHHHHHHHcC--CCEEEEEcH
Confidence 3445566778899999977664443 5566777888999 888777763
No 378
>cd01451 vWA_Magnesium_chelatase Magnesium chelatase: Mg-chelatase catalyses the insertion of Mg into protoporphyrin IX (Proto). In chlorophyll biosynthesis, insertion of Mg2+ into protoporphyrin IX is catalysed by magnesium chelatase in an ATP-dependent reaction. Magnesium chelatase is a three sub-unit (BchI, BchD and BchH) enzyme with a novel arrangement of domains: the C-terminal helical domain is located behind the nucleotide binding site. The BchD domain contains a AAA domain at its N-terminus and a VWA domain at its C-terminus. The VWA domain has been speculated to be involved in mediating protein-protein interactions.
Probab=23.42 E-value=1.9e+02 Score=22.29 Aligned_cols=44 Identities=14% Similarity=0.088 Sum_probs=32.4
Q ss_pred HHHHHHhhhCCcEEEEEeCCC----HHHHHHHHHHhCCeeeeEEEEcCCC
Q 029880 123 KESKARFDSAGVKLIAVGVGT----PNKAQILAERVGNVFITQVLSLPLE 168 (186)
Q Consensus 123 ~~l~~ef~~~Gv~vVaIs~d~----~e~~~~f~~~~~~~l~fpvL~Dp~~ 168 (186)
.++..++++.|+.+++|+.+. .+.+++.++..| =.|-.+.|.+.
T Consensus 122 ~~~~~~l~~~gi~v~~I~~~~~~~~~~~l~~iA~~tg--G~~~~~~d~~~ 169 (178)
T cd01451 122 LAAARKLRARGISALVIDTEGRPVRRGLAKDLARALG--GQYVRLPDLSA 169 (178)
T ss_pred HHHHHHHHhcCCcEEEEeCCCCccCccHHHHHHHHcC--CeEEEcCcCCH
Confidence 455667788999999888764 356889999888 66666666553
No 379
>cd00515 HAM1 NTPase/HAM1. This family consists of the HAM1 protein and pyrophosphate-releasing xanthosine/ inosine triphosphatase. HAM1 protects the cell against mutagenesis by the base analog 6-N-hydroxylaminopurine (HAP) in E. Coli and S. cerevisiae. A Ham1-related protein from Methanococcus jannaschii is a novel NTPase that has been shown to hydrolyze nonstandard nucleotides such as XTP to XMP and ITP to IMP, but not the standard nucleotides, in the presence of Mg or Mn ions. The enzyme exists as a homodimer. The HAM1 protein may be acting as an NTPase by hydrolyzing the HAP triphosphate.
Probab=23.30 E-value=99 Score=24.84 Aligned_cols=59 Identities=25% Similarity=0.310 Sum_probs=36.7
Q ss_pred HHHHHHHhhhCCcEEEEEe--CCCH------H-----HHHHHHHHhCCeeeeEEEEcCCCCccc-ceeeceEEEeee
Q 029880 122 LKESKARFDSAGVKLIAVG--VGTP------N-----KAQILAERVGNVFITQVLSLPLEVTPS-LFKFHVTYVKYV 184 (186)
Q Consensus 122 L~~l~~ef~~~Gv~vVaIs--~d~~------e-----~~~~f~~~~~~~l~fpvL~Dp~~~~~~-~f~~~~~~~~~~ 184 (186)
++++..-|...|+.|+.+. .+-+ + +++..++..+ .|+++|..+...+ +=|+.+.|.|++
T Consensus 11 ~~E~~~il~~~~i~v~~~~~~~~~~E~~~s~~enA~~KA~~a~~~~~----~pviadDsGL~i~aL~g~PG~ys~r~ 83 (183)
T cd00515 11 LKEFKEILAPFGIEVVSLKDIIDIEETGSTFEENALLKARAAAEALG----LPVLADDSGLCVDALNGFPGVYSARF 83 (183)
T ss_pred HHHHHHHHhhcCcEEEEcCcCCCCCCCCCCHHHHHHHHHHHHHHHHC----CCEEEeccEEEEeccCCCCchhhhhh
Confidence 4444444555678887777 4311 1 3455556666 6899998875444 557777777764
No 380
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=23.19 E-value=1.5e+02 Score=22.54 Aligned_cols=31 Identities=6% Similarity=0.045 Sum_probs=26.4
Q ss_pred HHHHhhhCCcEEEEEeCCCHHHHHHHHHHhC
Q 029880 125 SKARFDSAGVKLIAVGVGTPNKAQILAERVG 155 (186)
Q Consensus 125 l~~ef~~~Gv~vVaIs~d~~e~~~~f~~~~~ 155 (186)
..++++++|+.+..++......++.+.++++
T Consensus 36 ~i~~Lk~~G~~i~IvTn~~~~~~~~~l~~~g 66 (154)
T TIGR01670 36 GIRCALKSGIEVAIITGRKAKLVEDRCKTLG 66 (154)
T ss_pred HHHHHHHCCCEEEEEECCCCHHHHHHHHHcC
Confidence 4566778999999999998888888899998
No 381
>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase. This alignment encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512.
Probab=23.15 E-value=1.7e+02 Score=27.37 Aligned_cols=38 Identities=29% Similarity=0.423 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHhhhCC-cEEEEEeCCCHHHHHHHHHHhC
Q 029880 118 LASALKESKARFDSAG-VKLIAVGVGTPNKAQILAERVG 155 (186)
Q Consensus 118 el~~L~~l~~ef~~~G-v~vVaIs~d~~e~~~~f~~~~~ 155 (186)
--+...+..++++++| +++..++.++.+.++..+++.|
T Consensus 385 ~~~g~~e~l~~L~~~g~i~v~ivTgd~~~~a~~i~~~lg 423 (556)
T TIGR01525 385 LRPEAKEAIAALKRAGGIKLVMLTGDNRSAAEAVAAELG 423 (556)
T ss_pred chHhHHHHHHHHHHcCCCeEEEEeCCCHHHHHHHHHHhC
Confidence 4456677778888999 9999999999999999999999
No 382
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=23.13 E-value=1.8e+02 Score=18.65 Aligned_cols=55 Identities=22% Similarity=0.139 Sum_probs=28.9
Q ss_pred EEcCCCCcchHHHHHHHHHHHHHhhhCC--cEEEEEeCCCHHHHHHHHHHhCCeeeeEEEEcCCC
Q 029880 106 LLRHFGCPCCWELASALKESKARFDSAG--VKLIAVGVGTPNKAQILAERVGNVFITQVLSLPLE 168 (186)
Q Consensus 106 ffr~~wCp~C~~el~~L~~l~~ef~~~G--v~vVaIs~d~~e~~~~f~~~~~~~l~fpvL~Dp~~ 168 (186)
+|....||+|++-.-.|... +.| ++++.+... .....|.+..+ .-..|+|.++++
T Consensus 3 Ly~~~~s~~~~~~~~~l~~~-----~~~i~~~~~~~~~~--~~~~~~~~~~p-~~~vP~l~~~~g 59 (73)
T cd03049 3 LLYSPTSPYVRKVRVAAHET-----GLGDDVELVLVNPW--SDDESLLAVNP-LGKIPALVLDDG 59 (73)
T ss_pred EecCCCCcHHHHHHHHHHHh-----CCCCCcEEEEcCcc--cCChHHHHhCC-CCCCCEEEECCC
Confidence 45677899999766555541 133 344444432 22223444433 124788875443
No 383
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=23.11 E-value=3.1e+02 Score=23.62 Aligned_cols=35 Identities=20% Similarity=0.253 Sum_probs=30.4
Q ss_pred HHHHHHHHHHhhhCCcEEEEEeCCCHHHHHHHHHH
Q 029880 119 ASALKESKARFDSAGVKLIAVGVGTPNKAQILAER 153 (186)
Q Consensus 119 l~~L~~l~~ef~~~Gv~vVaIs~d~~e~~~~f~~~ 153 (186)
.+.+++...+++++|+.+..+|..+.+.+.+..++
T Consensus 33 ~~~~~e~L~~L~~~Gi~lai~S~n~~~~a~~~l~~ 67 (320)
T TIGR01686 33 HKTLQEKIKTLKKQGFLLALASKNDEDDAKKVFER 67 (320)
T ss_pred HHHHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHh
Confidence 57888999999999999888888888888888877
No 384
>TIGR01517 ATPase-IIB_Ca plasma-membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump. A separate analysis divides Type IIA into sub-types (SERCA and PMR1), which are modelled by the corresponding TIGR01116 and TIGR01522. This model is well separated from the two others.
Probab=23.07 E-value=1.4e+02 Score=30.07 Aligned_cols=35 Identities=20% Similarity=0.324 Sum_probs=30.6
Q ss_pred HHHHHHHHhhhCCcEEEEEeCCCHHHHHHHHHHhC
Q 029880 121 ALKESKARFDSAGVKLIAVGVGTPNKAQILAERVG 155 (186)
Q Consensus 121 ~L~~l~~ef~~~Gv~vVaIs~d~~e~~~~f~~~~~ 155 (186)
+..+..++++++|++++.|+.|..+.+...+++.|
T Consensus 583 ~~~~aI~~l~~aGI~v~miTGD~~~tA~~iA~~~G 617 (941)
T TIGR01517 583 GVREAVQECQRAGITVRMVTGDNIDTAKAIARNCG 617 (941)
T ss_pred hHHHHHHHHHHCCCEEEEECCCChHHHHHHHHHcC
Confidence 44456677889999999999999999999999999
No 385
>TIGR00591 phr2 photolyase PhrII. All proteins in this family for which functions are known are DNA-photolyases used for the direct repair of UV irradiation induced DNA damage. Some repair 6-4 photoproducts while others repair cyclobutane pyrimidine dimers. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=22.92 E-value=1.6e+02 Score=26.73 Aligned_cols=37 Identities=5% Similarity=-0.016 Sum_probs=31.3
Q ss_pred HHHHHHHHHHhhhCCcEEEEEeCCCHHHHHHHHHHhC
Q 029880 119 ASALKESKARFDSAGVKLIAVGVGTPNKAQILAERVG 155 (186)
Q Consensus 119 l~~L~~l~~ef~~~Gv~vVaIs~d~~e~~~~f~~~~~ 155 (186)
+..|.++..++++.|+.++....+..+.+.+++++++
T Consensus 77 ~esL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~ 113 (454)
T TIGR00591 77 LGGLDEVANECERLIIPFHLLDGPPKELLPYFVDLHA 113 (454)
T ss_pred HHHHHHHHHHHHHcCCceEEeecChHHHHHHHHHHcC
Confidence 3478888899999999999887777788888888888
No 386
>cd01481 vWA_collagen_alpha3-VI-like VWA_collagen alpha 3(VI) like: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=22.88 E-value=1.8e+02 Score=22.51 Aligned_cols=33 Identities=18% Similarity=0.253 Sum_probs=23.7
Q ss_pred HHHHHHHHhhhCCcEEEEEeCCC--HHHHHHHHHH
Q 029880 121 ALKESKARFDSAGVKLIAVGVGT--PNKAQILAER 153 (186)
Q Consensus 121 ~L~~l~~ef~~~Gv~vVaIs~d~--~e~~~~f~~~ 153 (186)
.+.+...++++.||.+++|+.+. .+++..++..
T Consensus 121 ~~~~~a~~lr~~gv~i~~vG~~~~~~~eL~~ias~ 155 (165)
T cd01481 121 DVERPAVALKRAGIVPFAIGARNADLAELQQIAFD 155 (165)
T ss_pred hHHHHHHHHHHCCcEEEEEeCCcCCHHHHHHHhCC
Confidence 35566778889999999999883 4556665543
No 387
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=22.65 E-value=1.9e+02 Score=27.01 Aligned_cols=43 Identities=23% Similarity=0.118 Sum_probs=27.4
Q ss_pred CCeEEEEEEcCCCCcchHHHHHHHHHHHHHhhhCCcEEEEEeCCC
Q 029880 99 EGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGT 143 (186)
Q Consensus 99 ~g~vvLvffr~~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~d~ 143 (186)
.+++.|++|....|..|.+...-|.++. ++.++ +.+..+..++
T Consensus 365 ~~~v~l~~~~~~~~~~~~e~~~~l~e~~-~~s~~-i~~~~~~~~~ 407 (555)
T TIGR03143 365 ENPVTLLLFLDGSNEKSAELQSFLGEFA-SLSEK-LNSEAVNRGE 407 (555)
T ss_pred CCCEEEEEEECCCchhhHHHHHHHHHHH-hcCCc-EEEEEecccc
Confidence 5688999999989988866655555544 33332 5555555444
No 388
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=22.57 E-value=1.4e+02 Score=23.83 Aligned_cols=36 Identities=11% Similarity=0.139 Sum_probs=28.0
Q ss_pred HHHHHHHHHhhhCCcEEEEEeCCCHHHHHHHHHHhC
Q 029880 120 SALKESKARFDSAGVKLIAVGVGTPNKAQILAERVG 155 (186)
Q Consensus 120 ~~L~~l~~ef~~~Gv~vVaIs~d~~e~~~~f~~~~~ 155 (186)
|.+.++...++++|+.+..+|.+....++.+.++.+
T Consensus 95 ~g~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l~~~~ 130 (222)
T PRK10826 95 PGVREALALCKAQGLKIGLASASPLHMLEAVLTMFD 130 (222)
T ss_pred CCHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHhCc
Confidence 345566677788899988888888888888888777
No 389
>PRK09628 oorB 2-oxoglutarate-acceptor oxidoreductase subunit OorB; Reviewed
Probab=22.55 E-value=68 Score=27.64 Aligned_cols=25 Identities=20% Similarity=0.190 Sum_probs=14.2
Q ss_pred EEcCCCCcchHHHHHHHHHHHHHhhh
Q 029880 106 LLRHFGCPCCWELASALKESKARFDS 131 (186)
Q Consensus 106 ffr~~wCp~C~~el~~L~~l~~ef~~ 131 (186)
.+.+.|||.|-.. -.++.+...+++
T Consensus 13 ~~~~~~CpGCg~~-i~~~~v~~al~e 37 (277)
T PRK09628 13 KMPTLWCWGCGDG-VILKSIIRAIDK 37 (277)
T ss_pred CCCCCcCCCCCCc-hHHHHHHHHHHH
Confidence 4568899999632 233444444443
No 390
>cd01460 vWA_midasin VWA_Midasin: Midasin is a member of the AAA ATPase family. The proteins of this family are unified by their common archetectural organization that is based upon a conserved ATPase domain. The AAA domain of midasin contains six tandem AAA protomers. The AAA domains in midasin is followed by a D/E rich domain that is following by a VWA domain. The members of this subgroup have a conserved MIDAS motif. The function of this domain is not exactly known although it has been speculated to play a crucial role in midasin function.
Probab=22.15 E-value=92 Score=26.77 Aligned_cols=37 Identities=11% Similarity=0.095 Sum_probs=25.3
Q ss_pred HHHhhhCCcEEEEEeCCCH------------------H-HHHHHHHHhCCeeeeEEEE
Q 029880 126 KARFDSAGVKLIAVGVGTP------------------N-KAQILAERVGNVFITQVLS 164 (186)
Q Consensus 126 ~~ef~~~Gv~vVaIs~d~~------------------e-~~~~f~~~~~~~l~fpvL~ 164 (186)
..+++++|+.++.|..|++ . .+..|.+.++ ++|-++.
T Consensus 187 ~r~a~e~~i~l~~I~ld~~~~~~SI~d~~~~~~~~~~~~~l~~Yl~~fp--fpYy~~~ 242 (266)
T cd01460 187 LREAREQNVFVVFIIIDNPDNKQSILDIKVVSFKNDKSGVITPYLDEFP--FPYYVIV 242 (266)
T ss_pred HHHHHHcCCeEEEEEEcCCCCCCCcccccccccCCCCccHHHHHHhcCC--CCeEEEe
Confidence 5566777888777776654 1 5667778777 7776554
No 391
>TIGR03609 S_layer_CsaB polysaccharide pyruvyl transferase CsaB. The CsaB protein (cell surface anchoring B) of Bacillus anthracis adds a pyruvoyl group to peptidoglycan-associated polysaccharide. This addition is required for proteins with an S-layer homology domain (pfam00395) to bind. Within the larger group of proteins described by Pfam model pfam04230, this model represents a distinct clade that nearly exactly follows the phylogenetic distribution of the S-layer homology domain (pfam00395).
Probab=22.13 E-value=4.7e+02 Score=21.84 Aligned_cols=55 Identities=15% Similarity=0.004 Sum_probs=34.1
Q ss_pred CeEEEEEEcCCCCcchHHHHHHHHHHHHHhhhC-CcEEEEEeCC---CHHHHHHHHHHhC
Q 029880 100 GVAVVALLRHFGCPCCWELASALKESKARFDSA-GVKLIAVGVG---TPNKAQILAERVG 155 (186)
Q Consensus 100 g~vvLvffr~~wCp~C~~el~~L~~l~~ef~~~-Gv~vVaIs~d---~~e~~~~f~~~~~ 155 (186)
++.+.+.++ .|...-..+...+.+..+++.++ |.+|+.|... +.+..++..++..
T Consensus 172 ~~~i~i~~r-~~~~~~~~~~~~l~~~l~~l~~~~g~~v~~i~~~~~~D~~~~~~l~~~~~ 230 (298)
T TIGR03609 172 EPVIVVSLR-PWPLLDVSRLLRLLRALDRLQRDTGAFVLFLPFQQPQDLPLARALRDQLL 230 (298)
T ss_pred CCeEEEEEC-CCCcCCHHHHHHHHHHHHHHHHhhCCeEEEEeCCcchhHHHHHHHHHhcC
Confidence 466666654 46555566677788777777554 8888887753 3334455555543
No 392
>TIGR03333 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase. Members of this family are the methionine salvage enzyme MnxX, a member of the HAD-superfamily hydrolases, subfamily IB (see TIGR01488). Members are found in Bacillus subtilis and related species, paired with MtnW (TIGR03332). In most species that recycle methionine from methylthioadenosine, the single protein MtnC replaces the MtnW/MtnX pair. In B. subtilis, mtnX was first known as ykrX.
Probab=22.04 E-value=2.3e+02 Score=22.61 Aligned_cols=36 Identities=17% Similarity=0.158 Sum_probs=29.0
Q ss_pred HHHHHHHHHhhhCCcEEEEEeCCCHHHHHHHHHHhC
Q 029880 120 SALKESKARFDSAGVKLIAVGVGTPNKAQILAERVG 155 (186)
Q Consensus 120 ~~L~~l~~ef~~~Gv~vVaIs~d~~e~~~~f~~~~~ 155 (186)
|.+.++.+.+++.|+.+..||.+....++.+.+.++
T Consensus 73 pg~~e~l~~l~~~g~~~~IvS~~~~~~i~~il~~~~ 108 (214)
T TIGR03333 73 EGFREFVAFINEHGIPFYVISGGMDFFVYPLLEGIV 108 (214)
T ss_pred ccHHHHHHHHHHCCCeEEEECCCcHHHHHHHHHhhC
Confidence 456667777889999999999998888888777764
No 393
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=22.02 E-value=1.7e+02 Score=23.05 Aligned_cols=37 Identities=16% Similarity=0.153 Sum_probs=30.0
Q ss_pred HHHHHHHHHHhhhCCcEEEEEeCCCHHHHHHHHHHhC
Q 029880 119 ASALKESKARFDSAGVKLIAVGVGTPNKAQILAERVG 155 (186)
Q Consensus 119 l~~L~~l~~ef~~~Gv~vVaIs~d~~e~~~~f~~~~~ 155 (186)
.|...++...++++|+.+..++....+.+....+..|
T Consensus 84 ~~g~~~~l~~L~~~g~~~~i~S~~~~~~~~~~l~~~g 120 (214)
T PRK13288 84 YETVYETLKTLKKQGYKLGIVTTKMRDTVEMGLKLTG 120 (214)
T ss_pred CcCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcC
Confidence 3566677788888899988888888888888888888
No 394
>cd01473 vWA_CTRP CTRP for CS protein-TRAP-related protein: Adhesion of Plasmodium to host cells is an important phenomenon in parasite invasion and in malaria associated pathology.CTRP encodes a protein containing a putative signal sequence followed by a long extracellular region of 1990 amino acids, a transmembrane domain, and a short cytoplasmic segment. The extracellular region of CTRP contains two separated adhesive domains. The first domain contains six 210-amino acid-long homologous VWA domain repeats. The second domain contains seven repeats of 87-60 amino acids in length, which share similarities with the thrombospondin type 1 domain found in a variety of adhesive molecules. Finally, CTRP also contains consensus motifs found in the superfamily of haematopoietin receptors. The VWA domains in these proteins likely mediate protein-protein interactions.
Probab=21.82 E-value=1.2e+02 Score=24.16 Aligned_cols=31 Identities=39% Similarity=0.648 Sum_probs=21.8
Q ss_pred HHHHHHHHhhhCCcEEEEEeCCCH--HHHHHHH
Q 029880 121 ALKESKARFDSAGVKLIAVGVGTP--NKAQILA 151 (186)
Q Consensus 121 ~L~~l~~ef~~~Gv~vVaIs~d~~--e~~~~f~ 151 (186)
.+.+..++++++||.+.+|+.+.. ++++..+
T Consensus 127 ~~~~~a~~lk~~gV~i~~vGiG~~~~~el~~ia 159 (192)
T cd01473 127 ELQDISLLYKEENVKLLVVGVGAASENKLKLLA 159 (192)
T ss_pred hHHHHHHHHHHCCCEEEEEEeccccHHHHHHhc
Confidence 355666788999999988888864 3444444
No 395
>TIGR01523 ATPase-IID_K-Na potassium and/or sodium efflux P-type ATPase, fungal-type. The Leishmania sequence (GP|3192903), which falls between trusted and noise in this model, may very well turn out to be an active potassium pump.
Probab=21.79 E-value=1.6e+02 Score=30.17 Aligned_cols=34 Identities=21% Similarity=0.342 Sum_probs=30.3
Q ss_pred HHHHHHHhhhCCcEEEEEeCCCHHHHHHHHHHhC
Q 029880 122 LKESKARFDSAGVKLIAVGVGTPNKAQILAERVG 155 (186)
Q Consensus 122 L~~l~~ef~~~Gv~vVaIs~d~~e~~~~f~~~~~ 155 (186)
..+..++++++|++++.|+.|..+.+...+++.|
T Consensus 651 v~~aI~~l~~aGIkv~MiTGD~~~tA~~iA~~~G 684 (1053)
T TIGR01523 651 SAGAVEKCHQAGINVHMLTGDFPETAKAIAQEVG 684 (1053)
T ss_pred HHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHcC
Confidence 4456677889999999999999999999999999
No 396
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=21.66 E-value=98 Score=22.56 Aligned_cols=32 Identities=6% Similarity=-0.031 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHhhhCCcEEEEEeCCCHHHHHH
Q 029880 118 LASALKESKARFDSAGVKLIAVGVGTPNKAQI 149 (186)
Q Consensus 118 el~~L~~l~~ef~~~Gv~vVaIs~d~~e~~~~ 149 (186)
+.+++.+..+..+++|+.+|+|.......+.+
T Consensus 59 ~t~~~~~~~~~a~~~g~~vi~iT~~~~s~la~ 90 (120)
T cd05710 59 NTKETVAAAKFAKEKGATVIGLTDDEDSPLAK 90 (120)
T ss_pred CChHHHHHHHHHHHcCCeEEEEECCCCCcHHH
Confidence 35566777777788899999999876655554
No 397
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=21.64 E-value=1.7e+02 Score=23.27 Aligned_cols=37 Identities=22% Similarity=0.231 Sum_probs=25.1
Q ss_pred HHHHHHHHhhhCCcEEEEEeC-CCHHHHHHHHHHhCCeee
Q 029880 121 ALKESKARFDSAGVKLIAVGV-GTPNKAQILAERVGNVFI 159 (186)
Q Consensus 121 ~L~~l~~ef~~~Gv~vVaIs~-d~~e~~~~f~~~~~~~l~ 159 (186)
...++..+++..|+.+.+-|. +.++-+++..+.++ +.
T Consensus 49 dv~~iL~~L~~~gv~lavASRt~~P~~A~~~L~~l~--i~ 86 (169)
T PF12689_consen 49 DVPEILQELKERGVKLAVASRTDEPDWARELLKLLE--ID 86 (169)
T ss_dssp THHHHHHHHHHCT--EEEEE--S-HHHHHHHHHHTT---C
T ss_pred CHHHHHHHHHHCCCEEEEEECCCChHHHHHHHHhcC--CC
Confidence 345566677779999988885 56888999999998 65
No 398
>PF10790 DUF2604: Protein of Unknown function (DUF2604); InterPro: IPR019726 This entry represents bacterial proteins with undetermined function.
Probab=21.54 E-value=86 Score=21.56 Aligned_cols=29 Identities=17% Similarity=0.218 Sum_probs=23.4
Q ss_pred cCCCCCCCCcCCeEEECCCCCEEeccccc
Q 029880 67 EFPANVGDLLGDFSIFTAAGEPVLFKDLW 95 (186)
Q Consensus 67 ~~~l~~G~~aPdf~L~d~~G~~vsLsdl~ 95 (186)
...-.+|+++-+..|+|..|+.++++.-.
T Consensus 27 e~sgNvgQP~ENWElkDe~G~vlD~~kKv 55 (76)
T PF10790_consen 27 EQSGNVGQPPENWELKDESGQVLDVNKKV 55 (76)
T ss_pred hhccccCCCcccceeeccCCcEeeccchh
Confidence 34456799999999999999999886543
No 399
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=21.52 E-value=2.5e+02 Score=22.48 Aligned_cols=45 Identities=13% Similarity=0.014 Sum_probs=28.1
Q ss_pred CCeEEEEEEcCCCCcchHHHHHHHHHHHHHhhhCCcEEEEEeCCCH
Q 029880 99 EGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTP 144 (186)
Q Consensus 99 ~g~vvLvffr~~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~d~~ 144 (186)
+++.++++.-+.| +..+--...+.++.+.+.+.|+.|+.++....
T Consensus 104 ~~~~i~i~~~a~~-~~k~wp~e~~~~l~~~l~~~~~~vvl~g~~~~ 148 (247)
T PF01075_consen 104 DKPYIGINPGASW-PSKRWPAEKWAELIERLKERGYRVVLLGGPEE 148 (247)
T ss_dssp TSSEEEEE---SS-GGGS--HHHHHHHHHHHCCCT-EEEE--SSHH
T ss_pred cCCeEEEeecCCC-ccccCCHHHHHHHHHHHHhhCceEEEEccchH
Confidence 4466666655555 77777778899999999999988777666654
No 400
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=21.39 E-value=2.2e+02 Score=22.09 Aligned_cols=39 Identities=15% Similarity=0.252 Sum_probs=29.4
Q ss_pred HHHHHHHHHhhhCCcEEEEEeCCCH------------HHHHHHHHHhCCeeee
Q 029880 120 SALKESKARFDSAGVKLIAVGVGTP------------NKAQILAERVGNVFIT 160 (186)
Q Consensus 120 ~~L~~l~~ef~~~Gv~vVaIs~d~~------------e~~~~f~~~~~~~l~f 160 (186)
+...+...+++++|+.+..++.... +.+..+.+.+| +.+
T Consensus 45 pgv~e~L~~Lk~~G~~l~I~TN~~~~~~~~~~~~~~~~~i~~~l~~~g--l~~ 95 (166)
T TIGR01664 45 PEIPAKLQELDDEGYKIVIFTNQSGIGRGKLSAESFKNKIEAFLEKLK--VPI 95 (166)
T ss_pred CCHHHHHHHHHHCCCEEEEEeCCcccccCcccHHHHHHHHHHHHHHcC--CCE
Confidence 4567777888899999999987654 24677788888 654
No 401
>PF02786 CPSase_L_D2: Carbamoyl-phosphate synthase L chain, ATP binding domain; InterPro: IPR005479 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the ATP-binding domain found in the large subunit of carbamoyl phosphate synthase, as well as in related proteins.; GO: 0003824 catalytic activity, 0005524 ATP binding, 0008152 metabolic process; PDB: 3U9S_A 3U9T_A 2C00_B 2VQD_A 1W96_B 1W93_A 1M6V_C 1CS0_C 1C30_E 1C3O_G ....
Probab=21.36 E-value=96 Score=25.44 Aligned_cols=37 Identities=24% Similarity=0.251 Sum_probs=26.0
Q ss_pred HHHhhhCCcEEE-EEeC--CCHHHHHHHHHHhCCeeeeEEEEcC
Q 029880 126 KARFDSAGVKLI-AVGV--GTPNKAQILAERVGNVFITQVLSLP 166 (186)
Q Consensus 126 ~~ef~~~Gv~vV-aIs~--d~~e~~~~f~~~~~~~l~fpvL~Dp 166 (186)
.+..++.|+.++ +... ++.+.+.+++++.| ||++.=+
T Consensus 6 ~~~~~~~gvp~~pg~~~~~~~~eea~~~a~~iG----yPVliKa 45 (211)
T PF02786_consen 6 RKLAKKLGVPVPPGSTVPISSVEEALEFAEEIG----YPVLIKA 45 (211)
T ss_dssp HHHHHHTT-BBSSBESSSBSSHHHHHHHHHHH-----SSEEEEE
T ss_pred HHHHHHCCCCcCCCCCCCCCCHHHHHHHHHhcC----CceEEee
Confidence 445677888877 4444 68999999999999 8888643
No 402
>TIGR02949 anti_SigH_actin anti-sigma factor, TIGR02949 family. This group of anti-sigma factors are associated in an apparent operon with a family of sigma-70 family sigma factors (TIGR02947). They and appear by homology, tree building, bidirectional best hits and one-to-a-genome distribution, to represent a conserved family. This family is restricted to the Actinobacteria.
Probab=21.03 E-value=91 Score=21.76 Aligned_cols=23 Identities=22% Similarity=0.326 Sum_probs=17.3
Q ss_pred CCCcchHHHHHHHHHHHHHhhhC
Q 029880 110 FGCPCCWELASALKESKARFDSA 132 (186)
Q Consensus 110 ~wCp~C~~el~~L~~l~~ef~~~ 132 (186)
..||.|+.++..+..+...++..
T Consensus 37 ~~C~~C~~e~~~~~~~~~~L~~~ 59 (84)
T TIGR02949 37 EACPECLEEYGLEQAVKKLLKRC 59 (84)
T ss_pred HhCHHHHHHHHHHHHHHHHHHHh
Confidence 37999999997766666666544
No 403
>PRK08674 bifunctional phosphoglucose/phosphomannose isomerase; Validated
Probab=20.91 E-value=2.8e+02 Score=24.07 Aligned_cols=47 Identities=21% Similarity=0.227 Sum_probs=31.6
Q ss_pred eEEEEEEcCCCCcchHHHHHHHHHHHHHhhhCCcEEEEEeCCCHHHHHHHHHHhC
Q 029880 101 VAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKAQILAERVG 155 (186)
Q Consensus 101 ~vvLvffr~~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~d~~e~~~~f~~~~~ 155 (186)
..+++.+-.++ +.+++.+..+..+++|+.+|+|+.+. .+.++++..+
T Consensus 79 ~dlvI~iS~SG------~T~e~~~a~~~a~~~ga~vIaIT~~~--~L~~~a~~~~ 125 (337)
T PRK08674 79 KTLVIAVSYSG------NTEETLSAVEQALKRGAKIIAITSGG--KLKEMAKEHG 125 (337)
T ss_pred CcEEEEEcCCC------CCHHHHHHHHHHHHCCCeEEEECCCc--hHHHHHHhcC
Confidence 44555544443 33455566666778899999999755 3888888877
No 404
>COG0415 PhrB Deoxyribodipyrimidine photolyase [DNA replication, recombination, and repair]
Probab=20.77 E-value=1.9e+02 Score=26.95 Aligned_cols=37 Identities=14% Similarity=0.193 Sum_probs=32.7
Q ss_pred HHHHHHHHHHhhhCCcEEEEEeCCCHHHHHHHHHHhC
Q 029880 119 ASALKESKARFDSAGVKLIAVGVGTPNKAQILAERVG 155 (186)
Q Consensus 119 l~~L~~l~~ef~~~Gv~vVaIs~d~~e~~~~f~~~~~ 155 (186)
...|+++.+.+++.|+.++....++.+.+.+++++.+
T Consensus 54 ~~sL~~L~~~L~~~gi~L~v~~~~~~~~l~~~~~~~~ 90 (461)
T COG0415 54 LQSLQALQQSLAELGIPLLVREGDPEQVLPELAKQLA 90 (461)
T ss_pred HHHHHHHHHHHHHcCCceEEEeCCHHHHHHHHHHHhC
Confidence 3458999999999999999999998888999998887
No 405
>PLN02382 probable sucrose-phosphatase
Probab=20.76 E-value=2.4e+02 Score=25.57 Aligned_cols=46 Identities=9% Similarity=-0.066 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHhhhCCcEEEEEeCCCHHHHHHHHHHhCCeeeeE--EEEc
Q 029880 118 LASALKESKARFDSAGVKLIAVGVGTPNKAQILAERVGNVFITQ--VLSL 165 (186)
Q Consensus 118 el~~L~~l~~ef~~~Gv~vVaIs~d~~e~~~~f~~~~~~~l~fp--vL~D 165 (186)
....+..+..++..+|+.+|..+.-..+.+++++++++ +..| ++++
T Consensus 30 s~~~~~~l~~~~~~~gi~fv~aTGR~~~~~~~l~~~~~--l~~p~~~I~~ 77 (413)
T PLN02382 30 SLLRFNALWEAEYRHDSLLVFSTGRSPTLYKELRKEKP--LLTPDITIMS 77 (413)
T ss_pred hHHHHHHHHHHhhcCCeeEEEEcCCCHHHHHHHHHhCC--CCCCCEEEEc
Confidence 34567777677888999998777778899999999998 7777 5555
No 406
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=20.70 E-value=1.8e+02 Score=23.94 Aligned_cols=36 Identities=22% Similarity=0.326 Sum_probs=29.1
Q ss_pred HHHHHHHHHhhhCCcEEEEEeCCCHHHHHHHHHHhC
Q 029880 120 SALKESKARFDSAGVKLIAVGVGTPNKAQILAERVG 155 (186)
Q Consensus 120 ~~L~~l~~ef~~~Gv~vVaIs~d~~e~~~~f~~~~~ 155 (186)
|.+.++.+.++++|+.+..++....+.++...+.++
T Consensus 111 pgv~e~L~~L~~~g~~l~I~Tn~~~~~~~~~l~~~g 146 (248)
T PLN02770 111 NGLYKLKKWIEDRGLKRAAVTNAPRENAELMISLLG 146 (248)
T ss_pred ccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHcC
Confidence 345566677788899999888888888888888888
No 407
>TIGR00067 glut_race glutamate racemase. The most closely related proteins differing in function are aspartate racemases.
Probab=20.57 E-value=2.7e+02 Score=23.38 Aligned_cols=39 Identities=15% Similarity=0.141 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHhh-hCCcEEEEEeCCCHHH--HHHHHHHhC
Q 029880 117 ELASALKESKARFD-SAGVKLIAVGVGTPNK--AQILAERVG 155 (186)
Q Consensus 117 ~el~~L~~l~~ef~-~~Gv~vVaIs~d~~e~--~~~f~~~~~ 155 (186)
+..+.+.+..+.++ +.|+++|+|.+++... ..+.+++.+
T Consensus 44 ~i~~~~~~~~~~L~~~~g~d~ivIaCNTA~a~~~~~l~~~~~ 85 (251)
T TIGR00067 44 FILEYVLELLTFLKERHNIKLLVVACNTASALALEDLQRNFD 85 (251)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEeCchHHHHHHHHHHHHCC
Confidence 33445556778888 9999999999999763 555666655
No 408
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=20.54 E-value=1.6e+02 Score=19.00 Aligned_cols=55 Identities=20% Similarity=0.159 Sum_probs=29.9
Q ss_pred EEcCCCCcchHHHHHHHHHHHHHhhhCCcEEEEEeCCCHHHHHHHHHHhCCeeeeEEEEcCC
Q 029880 106 LLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKAQILAERVGNVFITQVLSLPL 167 (186)
Q Consensus 106 ffr~~wCp~C~~el~~L~~l~~ef~~~Gv~vVaIs~d~~e~~~~f~~~~~~~l~fpvL~Dp~ 167 (186)
+|....||+|++-.-.|.+.. ..++++.++.. ..-..|.+.+...-..|+|.|.+
T Consensus 3 Ly~~~~sp~~~~v~~~l~~~g-----l~~~~~~~~~~--~~~~~~~~~~p~~~~vP~l~~~~ 57 (74)
T cd03058 3 LLGAWASPFVLRVRIALALKG-----VPYEYVEEDLG--NKSELLLASNPVHKKIPVLLHNG 57 (74)
T ss_pred EEECCCCchHHHHHHHHHHcC-----CCCEEEEeCcc--cCCHHHHHhCCCCCCCCEEEECC
Confidence 455678999998776666542 22445544433 22223444333002578888754
No 409
>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.
Probab=20.48 E-value=3.4e+02 Score=21.10 Aligned_cols=46 Identities=17% Similarity=0.185 Sum_probs=31.7
Q ss_pred HHHHHHHHHhhhCCcEEEEEeCCCHHHHHHHHHHhCCeeeeEEEEcCCCC
Q 029880 120 SALKESKARFDSAGVKLIAVGVGTPNKAQILAERVGNVFITQVLSLPLEV 169 (186)
Q Consensus 120 ~~L~~l~~ef~~~Gv~vVaIs~d~~e~~~~f~~~~~~~l~fpvL~Dp~~~ 169 (186)
+.+.+...++.++|+.++.++..+...++.+.+..+ .+++++....
T Consensus 20 ~~~~~~l~~l~~~g~~~~i~TGR~~~~~~~~~~~~~----~~~i~~nGa~ 65 (204)
T TIGR01484 20 PETIEALERLREAGVKVVLVTGRSLAEIKELLKQLP----LPLIAENGAL 65 (204)
T ss_pred HHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHhCC----CCEEECCCcE
Confidence 566677777888898787777778888887776543 4455554443
No 410
>PF10589 NADH_4Fe-4S: NADH-ubiquinone oxidoreductase-F iron-sulfur binding region; InterPro: IPR019575 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This entry describes the F subunit of complexes that resemble NADH-quinone oxidoreductases. The electron acceptor is a quinone, ubiquinone, in mitochondria and most bacteria, including Escherichia coli, where the recommended gene symbol is nuoF. This family does not have any members in chloroplast or cyanobacteria, where the quinone may be plastoquinone and NADH may be replaced by NADPH, nor in Methanosarcina, where NADH is replaced by F420H2. This entry represents the iron-sulphur binding domain of the F subunit.; GO: 0055114 oxidation-reduction process; PDB: 3IAS_S 2FUG_A 3I9V_A 3M9S_1 3IAM_A 2YBB_1.
Probab=20.43 E-value=21 Score=22.35 Aligned_cols=22 Identities=23% Similarity=0.235 Sum_probs=16.9
Q ss_pred CCCcchHHHHHHHHHHHHHhhh
Q 029880 110 FGCPCCWELASALKESKARFDS 131 (186)
Q Consensus 110 ~wCp~C~~el~~L~~l~~ef~~ 131 (186)
-.|.+|+.=.+.|.++.+++.+
T Consensus 17 GkC~PCR~Gt~~l~~~l~~i~~ 38 (46)
T PF10589_consen 17 GKCTPCREGTRQLAEILEKIVR 38 (46)
T ss_dssp S--HHHHCCCCHHHHHHHHHTB
T ss_pred CCCCCcHhHHHHHHHHHHHHHc
Confidence 4799999999999999888743
No 411
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=20.27 E-value=1.7e+02 Score=22.91 Aligned_cols=37 Identities=22% Similarity=0.210 Sum_probs=26.5
Q ss_pred HHHHHHHHHHhhhCCcEEEEEeCCCHHHHHHHHHHhC
Q 029880 119 ASALKESKARFDSAGVKLIAVGVGTPNKAQILAERVG 155 (186)
Q Consensus 119 l~~L~~l~~ef~~~Gv~vVaIs~d~~e~~~~f~~~~~ 155 (186)
.+...++.++++++|+.++.++.+....++...+..+
T Consensus 77 ~~g~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l~~~~ 113 (205)
T TIGR01454 77 FPGVPELLAELRADGVGTAIATGKSGPRARSLLEALG 113 (205)
T ss_pred CCCHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHcC
Confidence 3455666677777888888777777777777777777
No 412
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=20.21 E-value=1.8e+02 Score=23.57 Aligned_cols=36 Identities=14% Similarity=0.199 Sum_probs=28.7
Q ss_pred HHHHHHHHHhhhCCcEEEEEeCCCHHHHHHHHHHhC
Q 029880 120 SALKESKARFDSAGVKLIAVGVGTPNKAQILAERVG 155 (186)
Q Consensus 120 ~~L~~l~~ef~~~Gv~vVaIs~d~~e~~~~f~~~~~ 155 (186)
+.+.++...++++|+.+..++.+..+.++...+..+
T Consensus 96 ~g~~e~L~~Lk~~g~~~~i~Tn~~~~~~~~~l~~~~ 131 (224)
T PRK14988 96 EDTVPFLEALKASGKRRILLTNAHPHNLAVKLEHTG 131 (224)
T ss_pred CCHHHHHHHHHhCCCeEEEEeCcCHHHHHHHHHHCC
Confidence 556677788889999988888888877777777777
No 413
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=20.19 E-value=1.5e+02 Score=24.12 Aligned_cols=36 Identities=17% Similarity=0.158 Sum_probs=27.4
Q ss_pred HHHHHHHHHhhhCCcEEEEEeCCCHHHHHHHHHHhC
Q 029880 120 SALKESKARFDSAGVKLIAVGVGTPNKAQILAERVG 155 (186)
Q Consensus 120 ~~L~~l~~ef~~~Gv~vVaIs~d~~e~~~~f~~~~~ 155 (186)
|...++.+.++++|+.+..++....+.++...++++
T Consensus 102 pg~~e~L~~L~~~g~~l~IvT~~~~~~~~~~l~~~g 137 (253)
T TIGR01422 102 PGVIEVIAYLRARGIKIGSTTGYTREMMDVVAPEAA 137 (253)
T ss_pred CCHHHHHHHHHHCCCeEEEECCCcHHHHHHHHHHHH
Confidence 345566677788899888888888887887777776
No 414
>TIGR01261 hisB_Nterm histidinol-phosphatase. This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.
Probab=20.01 E-value=1.8e+02 Score=22.65 Aligned_cols=42 Identities=21% Similarity=0.246 Sum_probs=31.1
Q ss_pred HHHHHHHHHhhhCCcEEEEEeCCC---------------HHHHHHHHHHhCCeeeeE-EE
Q 029880 120 SALKESKARFDSAGVKLIAVGVGT---------------PNKAQILAERVGNVFITQ-VL 163 (186)
Q Consensus 120 ~~L~~l~~ef~~~Gv~vVaIs~d~---------------~e~~~~f~~~~~~~l~fp-vL 163 (186)
+...+...+++++|+.++.++..+ ...+.++.+.+| +.|. ++
T Consensus 32 pgv~e~L~~L~~~g~~l~IvSN~~g~~~~~~~~~~~~~~~~~~~~~l~~~g--l~fd~ii 89 (161)
T TIGR01261 32 KGVIPALLKLKKAGYKFVMVTNQDGLGTPSFPQADFDGPHNLMLQIFRSQG--IIFDDVL 89 (161)
T ss_pred CCHHHHHHHHHHCCCeEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHHCC--CceeEEE
Confidence 456777788889999999888752 235677888889 7773 44
Done!