BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029884
(186 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4AYC|B Chain B, Rnf8 Ring Domain Structure
Length = 138
Score = 33.9 bits (76), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 19/37 (51%)
Query: 150 LDRNDECGICMENCTKMVLPNCGHSLCVNCFHDWYPR 186
L+ +C IC E + V NC HS C C ++W R
Sbjct: 50 LENELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKR 86
>pdb|4EPO|C Chain C, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|G Chain G, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|H Chain H, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|K Chain K, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|L Chain L, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 33.9 bits (76), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 38/88 (43%), Gaps = 15/88 (17%)
Query: 101 REFYAIIYPSLRQLESEFSELEDNSKRDQCSEISSRKRVEERRKLSDKD--LDRNDECGI 158
++F AII ++LE Q E + + ++ LS + L+ +C I
Sbjct: 23 KDFEAIIQAKNKELE-------------QTKEEKEKMQAQKEEVLSHMNDVLENELQCII 69
Query: 159 CMENCTKMVLPNCGHSLCVNCFHDWYPR 186
C E + V NC HS C C ++W R
Sbjct: 70 CSEYFIEAVTLNCAHSFCSYCINEWMKR 97
>pdb|4AYC|A Chain A, Rnf8 Ring Domain Structure
Length = 138
Score = 33.5 bits (75), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 19/37 (51%)
Query: 150 LDRNDECGICMENCTKMVLPNCGHSLCVNCFHDWYPR 186
L+ +C IC E + V NC HS C C ++W R
Sbjct: 50 LENELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKR 86
>pdb|2ECN|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 141
Length = 70
Score = 33.1 bits (74), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 148 KDLDRNDECGICMENCTKMVLPNCGHSLCVNCFHDWYPR 186
K L +EC ICM+ ++LP C HS C C W R
Sbjct: 10 KQLTDEEECCICMDGRADLILP-CAHSFCQKCIDKWSDR 47
>pdb|1FBV|A Chain A, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 388
Score = 31.6 bits (70), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 156 CGICMENCTKMVLPNCGHSLCVNCFHDW 183
C IC EN + + CGH +C +C W
Sbjct: 335 CKICAENDKDVKIEPCGHLMCTSCLTSW 362
>pdb|4A4C|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 391
Score = 31.6 bits (70), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 156 CGICMENCTKMVLPNCGHSLCVNCFHDW 183
C IC EN + + CGH +C +C W
Sbjct: 337 CKICAENDKDVKIEPCGHLMCTSCLTSW 364
>pdb|2Y1M|A Chain A, Structure Of Native C-Cbl
pdb|2Y1M|B Chain B, Structure Of Native C-Cbl
pdb|2Y1M|C Chain C, Structure Of Native C-Cbl
pdb|2Y1M|D Chain D, Structure Of Native C-Cbl
pdb|2Y1M|E Chain E, Structure Of Native C-Cbl
pdb|2Y1M|F Chain F, Structure Of Native C-Cbl
pdb|2Y1N|A Chain A, Structure Of C-Cbl-Zap-70 Peptide Complex
pdb|2Y1N|C Chain C, Structure Of C-Cbl-Zap-70 Peptide Complex
Length = 389
Score = 31.6 bits (70), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 156 CGICMENCTKMVLPNCGHSLCVNCFHDW 183
C IC EN + + CGH +C +C W
Sbjct: 335 CKICAENDKDVKIEPCGHLMCTSCLTSW 362
>pdb|4A4B|A Chain A, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
Length = 391
Score = 31.6 bits (70), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 156 CGICMENCTKMVLPNCGHSLCVNCFHDW 183
C IC EN + + CGH +C +C W
Sbjct: 337 CKICAENDKDVKIEPCGHLMCTSCLTSW 364
>pdb|3VGO|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|B Chain B, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|C Chain C, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
Length = 394
Score = 31.2 bits (69), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 156 CGICMENCTKMVLPNCGHSLCVNCFHDW 183
C IC EN + + CGH +C +C W
Sbjct: 341 CKICAENDKDVKIEPCGHLMCTSCLTAW 368
>pdb|3L11|A Chain A, Crystal Structure Of The Ring Domain Of Rnf168
Length = 115
Score = 30.8 bits (68), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 155 ECGICMENCTKMVLPNCGHSLCVNCFHD 182
+CGICME + V C H+LC CF
Sbjct: 17 QCGICMEILVEPVTLPCNHTLCKPCFQS 44
>pdb|2YNM|D Chain D, Structure Of The Adpxalf3-stabilized Transition State Of
The Nitrogenase-like Dark-operative Protochlorophyllide
Oxidoreductase Complex From Prochlorococcus Marinus With
Its Substrate Protochlorophyllide A
Length = 530
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 44/114 (38%), Gaps = 15/114 (13%)
Query: 34 RDYGGDFVQMRLSY-----SPFAPLVLFMIEWMDYSCTDTVPSYL--GL-LNILVYKVYV 85
RD GGD ++ + F P L + E P L G+ LNI + +
Sbjct: 63 RDLGGDTAELVKGHIFEAVERFKPEALLVGESCTAELIQDQPGSLAKGMGLNIPIVSLE- 121
Query: 86 DGMPALSSKERKATLREFYAIIYPSLRQLESEFSELEDNSKRDQCSEISSRKRV 139
+PA S KE FY +I R L E SE N+ + E R RV
Sbjct: 122 --LPAYSKKENWGASETFYQLI----RGLLKEISEDSSNNAKQSWQEEGRRPRV 169
>pdb|3CE2|A Chain A, Crystal Structure Of Putative Peptidase From Chlamydophila
Abortus
Length = 618
Score = 28.9 bits (63), Expect = 1.6, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Query: 73 LGLLNILVYKVYVDGMPALSSKERKATLREFYAIIYPSLRQLESEF 118
L L + Y VY P SKE+K T +E +IY SL L +E+
Sbjct: 306 LNLKDFHFYDVYA---PLSQSKEKKYTFQEAVDLIYTSLSPLGTEY 348
>pdb|2ECJ|A Chain A, Solution Structure Of The Ring Domain Of The Human
Tripartite Motif-Containing Protein 39
Length = 58
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 19/37 (51%)
Query: 148 KDLDRNDECGICMENCTKMVLPNCGHSLCVNCFHDWY 184
++L C +C+E + V+ CGH+ C C W+
Sbjct: 10 ENLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWW 46
>pdb|2K4D|A Chain A, E2-C-Cbl Recognition Is Necessary But Not Sufficient For
Ubiquitination Activity
Length = 83
Score = 28.5 bits (62), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 156 CGICMENCTKMVLPNCGHSLCVNCFHDW 183
C IC EN + + CGH +C +C W
Sbjct: 27 CKICAENDKDVKIEPCGHLMCTSCLTSW 54
>pdb|2B7J|A Chain A, Crystal Structure Of Yeast Sco1 With Copper Bound
pdb|2B7J|B Chain B, Crystal Structure Of Yeast Sco1 With Copper Bound
pdb|2B7J|C Chain C, Crystal Structure Of Yeast Sco1 With Copper Bound
pdb|2B7J|D Chain D, Crystal Structure Of Yeast Sco1 With Copper Bound
pdb|2B7K|A Chain A, Crystal Structure Of Yeast Sco1
pdb|2B7K|B Chain B, Crystal Structure Of Yeast Sco1
pdb|2B7K|C Chain C, Crystal Structure Of Yeast Sco1
pdb|2B7K|D Chain D, Crystal Structure Of Yeast Sco1
Length = 200
Score = 28.5 bits (62), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 45/101 (44%), Gaps = 16/101 (15%)
Query: 36 YGGDFVQMRLSYSPFAPLVLFMIEWMDYS-CTDTVPS---YLGL-LNILVYKVYVDGMPA 90
YG +F + L L F I + +S C D P LGL LN L K + P
Sbjct: 30 YGNEFTEKNL-------LGKFSIIYFGFSNCPDICPDELDKLGLWLNTLSSKYGITLQPL 82
Query: 91 L----SSKERKATLREFYAIIYPSLRQLESEFSELEDNSKR 127
+++ A L+E+ + +PS+ L F E+++ K+
Sbjct: 83 FITCDPARDSPAVLKEYLSDFHPSILGLTGTFDEVKNACKK 123
>pdb|4A49|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
Length = 84
Score = 28.1 bits (61), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 156 CGICMENCTKMVLPNCGHSLCVNCFHDW 183
C IC EN + + CGH +C +C W
Sbjct: 30 CKICAENDKDVKIEPCGHLMCTSCLTSW 57
>pdb|2LDR|A Chain A, Solution Structure Of Helix-Ring Domain Of Cbl-B In The
Tyr363 Phosphorylated Form
Length = 82
Score = 26.9 bits (58), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 156 CGICMENCTKMVLPNCGHSLCVNCFHDW 183
C IC EN + + CGH +C +C W
Sbjct: 29 CKICAENDKDVKIEPCGHLMCTSCLTAW 56
>pdb|2Y43|A Chain A, Rad18 Ubiquitin Ligase Ring Domain Structure
pdb|2Y43|B Chain B, Rad18 Ubiquitin Ligase Ring Domain Structure
Length = 99
Score = 26.9 bits (58), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 148 KDLDRNDECGICMENCT-KMVLPNCGHSLCVNCFHDW 183
K +D CGIC E M++P C H+ C C +
Sbjct: 17 KTIDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKF 53
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,312,015
Number of Sequences: 62578
Number of extensions: 194916
Number of successful extensions: 597
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 571
Number of HSP's gapped (non-prelim): 31
length of query: 186
length of database: 14,973,337
effective HSP length: 93
effective length of query: 93
effective length of database: 9,153,583
effective search space: 851283219
effective search space used: 851283219
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)