BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029884
(186 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O64425|RMA1_ARATH E3 ubiquitin-protein ligase RMA1 OS=Arabidopsis thaliana GN=RMA1
PE=1 SV=1
Length = 249
Score = 37.7 bits (86), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 146 SDKDLDRNDECGICMENCTKMVLPNCGHSLCVNCFHDW 183
SD D N +C IC+++ + V+ CGH C C H W
Sbjct: 38 SDDTDDSNFDCNICLDSVQEPVVTLCGHLFCWPCIHKW 75
>sp|Q5ZM74|RN141_CHICK RING finger protein 141 OS=Gallus gallus GN=RNF141 PE=2 SV=1
Length = 230
Score = 37.4 bits (85), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 154 DECGICMENCTKMVLPNCGHSLCVNCFHDWYPR 186
DEC ICM+ ++LP C HS C C W R
Sbjct: 153 DECCICMDGRVDLILP-CAHSFCQKCIDKWSDR 184
>sp|Q32L15|RN141_BOVIN RING finger protein 141 OS=Bos taurus GN=RNF141 PE=2 SV=1
Length = 230
Score = 37.0 bits (84), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 148 KDLDRNDECGICMENCTKMVLPNCGHSLCVNCFHDWYPR 186
K L +EC ICM+ ++LP C HS C C W R
Sbjct: 147 KQLTDEEECCICMDGRADLILP-CAHSFCQKCIDKWSDR 184
>sp|Q5R7K8|RN141_PONAB RING finger protein 141 OS=Pongo abelii GN=RNF141 PE=2 SV=1
Length = 230
Score = 37.0 bits (84), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 148 KDLDRNDECGICMENCTKMVLPNCGHSLCVNCFHDWYPR 186
K L +EC ICM+ ++LP C HS C C W R
Sbjct: 147 KQLTDEEECCICMDGRADLILP-CAHSFCQKCIDKWSDR 184
>sp|Q8WVD5|RN141_HUMAN RING finger protein 141 OS=Homo sapiens GN=RNF141 PE=1 SV=1
Length = 230
Score = 37.0 bits (84), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 148 KDLDRNDECGICMENCTKMVLPNCGHSLCVNCFHDWYPR 186
K L +EC ICM+ ++LP C HS C C W R
Sbjct: 147 KQLTDEEECCICMDGRADLILP-CAHSFCQKCIDKWSDR 184
>sp|Q99MB7|RN141_MOUSE RING finger protein 141 OS=Mus musculus GN=Rnf141 PE=2 SV=2
Length = 230
Score = 37.0 bits (84), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 148 KDLDRNDECGICMENCTKMVLPNCGHSLCVNCFHDWYPR 186
K L +EC ICM+ ++LP C HS C C W R
Sbjct: 147 KQLTDEEECCICMDGRADLILP-CAHSFCQKCIDKWSDR 184
>sp|Q2XNS1|RN141_CANFA RING finger protein 141 OS=Canis familiaris GN=RNF141 PE=2 SV=1
Length = 231
Score = 37.0 bits (84), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 148 KDLDRNDECGICMENCTKMVLPNCGHSLCVNCFHDWYPR 186
K L +EC ICM+ ++LP C HS C C W R
Sbjct: 148 KQLTDEEECCICMDGRADLILP-CAHSFCQKCIDKWSDR 185
>sp|Q6IV57|RN141_RAT RING finger protein 141 OS=Rattus norvegicus GN=Rnf141 PE=2 SV=1
Length = 230
Score = 37.0 bits (84), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 148 KDLDRNDECGICMENCTKMVLPNCGHSLCVNCFHDWYPR 186
K L +EC ICM+ ++LP C HS C C W R
Sbjct: 147 KQLTDEEECCICMDGRADLILP-CAHSFCQKCIDKWSDR 184
>sp|Q6IV56|RN141_DANRE RING finger protein 141 OS=Danio rerio GN=rnf141 PE=2 SV=2
Length = 222
Score = 36.2 bits (82), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 37/100 (37%), Gaps = 14/100 (14%)
Query: 86 DGMPALSSKERKATLREFYAIIYPSLRQLESEFSE--LEDNSKRDQCSEISSRKRVEERR 143
DGM S R L +F + Q FS + S D C RV
Sbjct: 86 DGMVEAS---RIMNLYQFIQLYKDITSQAAEVFSSNVAAEGSSEDTCQASMWMGRV---- 138
Query: 144 KLSDKDLDRNDECGICMENCTKMVLPNCGHSLCVNCFHDW 183
K L +EC ICM+ ++LP C HS C C W
Sbjct: 139 ----KQLTDEEECCICMDGKADLILP-CAHSFCQKCIDKW 173
>sp|Q09463|RNF5_CAEEL RING finger protein 5 OS=Caenorhabditis elegans GN=rnf-5 PE=1 SV=1
Length = 235
Score = 36.2 bits (82), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 22/49 (44%)
Query: 135 SRKRVEERRKLSDKDLDRNDECGICMENCTKMVLPNCGHSLCVNCFHDW 183
++ EE S+KD EC IC++ V+ CGH C C W
Sbjct: 5 TKAPSEEPTSSSNKDESARFECNICLDAAKDAVVSLCGHLFCWPCLSQW 53
>sp|Q1MTQ0|BRL1_SCHPO E3 ubiquitin-protein ligase brl1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=brl1 PE=1 SV=1
Length = 692
Score = 36.2 bits (82), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 156 CGIC-MENCTKMVLPNCGHSLCVNCFHDWY 184
C +C N ++PNCGH+ C NC +Y
Sbjct: 639 CSVCNFSNWKSKLIPNCGHAFCSNCMEPFY 668
>sp|Q96GF1|RN185_HUMAN E3 ubiquitin-protein ligase RNF185 OS=Homo sapiens GN=RNF185 PE=1
SV=1
Length = 192
Score = 36.2 bits (82), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 151 DRNDECGICMENCTKMVLPNCGHSLCVNCFHDW 183
D EC IC++ V+ CGH C C H W
Sbjct: 34 DSTFECNICLDTAKDAVISLCGHLFCWPCLHQW 66
>sp|Q5ZIR9|RN185_CHICK E3 ubiquitin-protein ligase RNF185 OS=Gallus gallus GN=RNF185 PE=2
SV=1
Length = 194
Score = 35.8 bits (81), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 18/37 (48%)
Query: 147 DKDLDRNDECGICMENCTKMVLPNCGHSLCVNCFHDW 183
+ + D EC IC++ V+ CGH C C H W
Sbjct: 32 NTNQDNTFECNICLDTAKDAVISLCGHLFCWPCLHQW 68
>sp|Q568Y3|RN185_RAT E3 ubiquitin-protein ligase RNF185 OS=Rattus norvegicus GN=Rnf185
PE=2 SV=1
Length = 192
Score = 35.8 bits (81), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 151 DRNDECGICMENCTKMVLPNCGHSLCVNCFHDW 183
D EC IC++ V+ CGH C C H W
Sbjct: 34 DSTFECNICLDTAKDAVISLCGHLFCWPCLHQW 66
>sp|Q5RFK9|RN185_PONAB E3 ubiquitin-protein ligase RNF185 OS=Pongo abelii GN=RNF185 PE=2
SV=1
Length = 192
Score = 35.8 bits (81), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 151 DRNDECGICMENCTKMVLPNCGHSLCVNCFHDW 183
D EC IC++ V+ CGH C C H W
Sbjct: 34 DSTFECNICLDTAKDAVISLCGHLFCWPCLHQW 66
>sp|Q91YT2|RN185_MOUSE E3 ubiquitin-protein ligase RNF185 OS=Mus musculus GN=Rnf185 PE=2
SV=1
Length = 192
Score = 35.8 bits (81), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 151 DRNDECGICMENCTKMVLPNCGHSLCVNCFHDW 183
D EC IC++ V+ CGH C C H W
Sbjct: 34 DSTFECNICLDTAKDAVISLCGHLFCWPCLHQW 66
>sp|Q5M807|RNF5_RAT E3 ubiquitin-protein ligase RNF5 OS=Rattus norvegicus GN=Rnf5 PE=2
SV=1
Length = 180
Score = 35.4 bits (80), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 155 ECGICMENCTKMVLPNCGHSLCVNCFHDW 183
EC IC+E + V+ CGH C C H W
Sbjct: 26 ECNICLETAREAVVSVCGHLYCWPCLHQW 54
>sp|O35445|RNF5_MOUSE E3 ubiquitin-protein ligase RNF5 OS=Mus musculus GN=Rnf5 PE=1 SV=1
Length = 180
Score = 35.4 bits (80), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 155 ECGICMENCTKMVLPNCGHSLCVNCFHDW 183
EC IC+E + V+ CGH C C H W
Sbjct: 26 ECNICLETAREAVVSVCGHLYCWPCLHQW 54
>sp|Q99942|RNF5_HUMAN E3 ubiquitin-protein ligase RNF5 OS=Homo sapiens GN=RNF5 PE=1 SV=1
Length = 180
Score = 35.4 bits (80), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 155 ECGICMENCTKMVLPNCGHSLCVNCFHDW 183
EC IC+E + V+ CGH C C H W
Sbjct: 26 ECNICLETAREAVVSVCGHLYCWPCLHQW 54
>sp|Q8L9T5|ATL2_ARATH RING-H2 finger protein ATL2 OS=Arabidopsis thaliana GN=ATL2 PE=2
SV=2
Length = 304
Score = 35.4 bits (80), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 4/34 (11%)
Query: 155 ECGICM----ENCTKMVLPNCGHSLCVNCFHDWY 184
EC +C+ E+ T VLPNC H+ V+C W+
Sbjct: 118 ECAVCLSEFEESETGRVLPNCQHTFHVDCIDMWF 151
>sp|Q7ZX20|RNF8A_XENLA E3 ubiquitin-protein ligase RNF8-A OS=Xenopus laevis GN=rnf8-a PE=2
SV=1
Length = 540
Score = 35.4 bits (80), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 18/37 (48%)
Query: 150 LDRNDECGICMENCTKMVLPNCGHSLCVNCFHDWYPR 186
LD +C IC E+ + V NC HS C C W R
Sbjct: 376 LDNELQCIICSEHFIEAVTLNCAHSFCSYCIKSWKKR 412
>sp|Q6PC78|RN185_DANRE E3 ubiquitin-protein ligase RNF185 OS=Danio rerio GN=rnf185 PE=2
SV=1
Length = 194
Score = 35.0 bits (79), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 151 DRNDECGICMENCTKMVLPNCGHSLCVNCFHDW 183
D EC IC++ V+ CGH C C H W
Sbjct: 36 DSTFECNICLDTSKDAVISLCGHLFCWPCLHQW 68
>sp|Q5R4I2|RNF8_PONAB E3 ubiquitin-protein ligase RNF8 OS=Pongo abelii GN=RNF8 PE=2 SV=1
Length = 486
Score = 35.0 bits (79), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 11/86 (12%)
Query: 101 REFYAIIYPSLRQLESEFSELEDNSKRDQCSEISSRKRVEERRKLSDKDLDRNDECGICM 160
++F AII ++LE E E ++ ++K EE + L+ +C IC
Sbjct: 360 KDFEAIIQAKNKELEQTKEEKE---------KVQAQK--EEVLSHMNDVLENELQCIICS 408
Query: 161 ENCTKMVLPNCGHSLCVNCFHDWYPR 186
E + V NC HS C C ++W R
Sbjct: 409 EYFIEAVTLNCAHSFCSYCINEWMKR 434
>sp|Q6C2R8|RAD5_YARLI DNA repair protein RAD5 OS=Yarrowia lipolytica (strain CLIB 122 / E
150) GN=RAD5 PE=3 SV=1
Length = 1025
Score = 35.0 bits (79), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 155 ECGICMENCTKMVLPNCGHSLCVNCFHD 182
EC IC E+ TK+ + C H CV+C D
Sbjct: 781 ECPICAEDVTKLAISKCLHMGCVDCLAD 808
>sp|Q9FNI6|SM3L2_ARATH Putative SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin subfamily A member 3-like 2
OS=Arabidopsis thaliana GN=At5g22750 PE=2 SV=1
Length = 1029
Score = 35.0 bits (79), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 31/71 (43%), Gaps = 7/71 (9%)
Query: 110 SLRQLESEFSELEDNSKRDQCSEISSRKRVEERRKLSDKDLDRNDECGICMENCTKMVLP 169
S R L + S LE K D SE ++ VEE RK EC IC+E VL
Sbjct: 755 SKRFLSGKSSGLEREGK-DVPSEAFVQEVVEELRK------GEQGECPICLEALEDAVLT 807
Query: 170 NCGHSLCVNCF 180
C H LC C
Sbjct: 808 PCAHRLCRECL 818
>sp|Q6NRG0|RNF8B_XENLA E3 ubiquitin-protein ligase RNF8-B OS=Xenopus laevis GN=rnf8-b PE=2
SV=1
Length = 532
Score = 35.0 bits (79), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 18/37 (48%)
Query: 150 LDRNDECGICMENCTKMVLPNCGHSLCVNCFHDWYPR 186
LD +C IC E+ + V NC HS C C W R
Sbjct: 371 LDNELQCIICSEHFIEAVTLNCAHSFCSYCIKSWRKR 407
>sp|O76064|RNF8_HUMAN E3 ubiquitin-protein ligase RNF8 OS=Homo sapiens GN=RNF8 PE=1 SV=1
Length = 485
Score = 35.0 bits (79), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 38/88 (43%), Gaps = 15/88 (17%)
Query: 101 REFYAIIYPSLRQLESEFSELEDNSKRDQCSEISSRKRVEERRKLSDKD--LDRNDECGI 158
++F AII ++LE Q E + + ++ LS + L+ +C I
Sbjct: 359 KDFEAIIQAKNKELE-------------QTKEEKEKMQAQKEEVLSHMNDVLENELQCII 405
Query: 159 CMENCTKMVLPNCGHSLCVNCFHDWYPR 186
C E + V NC HS C C ++W R
Sbjct: 406 CSEYFIEAVTLNCAHSFCSYCINEWMKR 433
>sp|Q803C1|RNF8_DANRE E3 ubiquitin-protein ligase RNF8 OS=Danio rerio GN=rnf8 PE=2 SV=1
Length = 485
Score = 34.7 bits (78), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 155 ECGICMENCTKMVLPNCGHSLCVNCFHDWYPR 186
+C IC E + V NC HS C +C +W R
Sbjct: 391 QCSICSELFIEAVTLNCAHSFCQHCISEWRNR 422
>sp|Q9SJJ7|ATL57_ARATH RING-H2 finger protein ATL57 OS=Arabidopsis thaliana GN=ATL57 PE=2
SV=1
Length = 237
Score = 34.3 bits (77), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
Query: 152 RNDECGICM----ENCTKMVLPNCGHSLCVNCFHDW 183
RN++C IC+ E T V+P+CGH V+C W
Sbjct: 136 RNEDCVICLSDFEEGETVKVIPHCGHVFHVDCVDTW 171
>sp|Q6LFN2|ZNRF1_PLAF7 RING finger protein PFF0165c OS=Plasmodium falciparum (isolate 3D7)
GN=PFF0165c PE=2 SV=1
Length = 1103
Score = 34.3 bits (77), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 156 CGICMENCTKMVLPNCGHSLCVNC-FHDWYPR 186
C +CMEN ++ CGH C NC F++ R
Sbjct: 1050 CSVCMENFRNYIIIKCGHIYCNNCIFNNLKTR 1081
>sp|Q2HJ46|RNF8_BOVIN E3 ubiquitin-protein ligase RNF8 OS=Bos taurus GN=RNF8 PE=2 SV=1
Length = 487
Score = 34.3 bits (77), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 38/86 (44%), Gaps = 11/86 (12%)
Query: 101 REFYAIIYPSLRQLESEFSELEDNSKRDQCSEISSRKRVEERRKLSDKDLDRNDECGICM 160
+ F AII ++LE E E ++ ++K EE + L+ +C IC
Sbjct: 361 KNFEAIIQAKDKELEQTKEEKE---------KVQAQK--EEVLSHMNDVLENELQCIICS 409
Query: 161 ENCTKMVLPNCGHSLCVNCFHDWYPR 186
E + V NC HS C C ++W R
Sbjct: 410 EYFVEAVTLNCAHSFCSYCINEWMKR 435
>sp|Q3UWZ0|TRI75_MOUSE Tripartite motif-containing protein 75 OS=Mus musculus GN=Trim75
PE=2 SV=1
Length = 467
Score = 34.3 bits (77), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 21/35 (60%)
Query: 150 LDRNDECGICMENCTKMVLPNCGHSLCVNCFHDWY 184
L + +C IC+++ T V CGH+ C +C D++
Sbjct: 10 LQKETKCPICLDDLTDPVTVECGHNFCRSCIKDFW 44
>sp|O60683|PEX10_HUMAN Peroxisome biogenesis factor 10 OS=Homo sapiens GN=PEX10 PE=1 SV=1
Length = 326
Score = 33.9 bits (76), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 18/44 (40%)
Query: 140 EERRKLSDKDLDRNDECGICMENCTKMVLPNCGHSLCVNCFHDW 183
R L ++ + RN C +C+E CGH C C W
Sbjct: 257 HRRASLEERAVSRNPLCTLCLEERRHPTATPCGHLFCWECITAW 300
>sp|Q8HXW8|PEX10_MACFA Peroxisome biogenesis factor 10 OS=Macaca fascicularis GN=PEX10
PE=2 SV=1
Length = 326
Score = 33.5 bits (75), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 18/44 (40%)
Query: 140 EERRKLSDKDLDRNDECGICMENCTKMVLPNCGHSLCVNCFHDW 183
R L ++ + RN C +C+E CGH C C W
Sbjct: 257 HRRGSLEERAVSRNPLCTLCLEERRHPTATPCGHLFCWECITAW 300
>sp|Q8VC56|RNF8_MOUSE E3 ubiquitin-protein ligase RNF8 OS=Mus musculus GN=Rnf8 PE=1 SV=1
Length = 488
Score = 33.5 bits (75), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 124 NSKRDQCSEISSRKRVEERRKLSD-KDLDRND-ECGICMENCTKMVLPNCGHSLCVNCFH 181
N + +Q E + + ++ LS DL N+ +C IC E + V NC HS C C +
Sbjct: 372 NKELEQTKEEKDKVQAQKEEVLSHMNDLLENELQCIICSEYFIEAVTLNCAHSFCSFCIN 431
Query: 182 DWYPR 186
+W R
Sbjct: 432 EWMKR 436
>sp|Q9FKA7|ORTH1_ARATH E3 ubiquitin-protein ligase ORTHRUS 1 OS=Arabidopsis thaliana
GN=ORTH1 PE=1 SV=1
Length = 617
Score = 33.5 bits (75), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 22/98 (22%), Positives = 44/98 (44%), Gaps = 7/98 (7%)
Query: 88 MPALSSKERKATLREFYAIIYPSLRQLESE--FSELEDNSKRDQCSEISSRKRVEERRKL 145
+P+ + A +++ ++R ++++ +E E KR + V+E K
Sbjct: 64 VPSAAPGTGNARPESSGSVLVAAIRAIQADETLTEAEKAKKRQKLMSGGGDDGVDEEEK- 122
Query: 146 SDKDLDRNDECGICMENCTKMVLPNCGHSLCVNCFHDW 183
K L+ C IC++ + + CGH+ C+ CF W
Sbjct: 123 --KKLEIF--CSICIQLPERPITTPCGHNFCLKCFEKW 156
>sp|P98170|XIAP_HUMAN E3 ubiquitin-protein ligase XIAP OS=Homo sapiens GN=XIAP PE=1 SV=2
Length = 497
Score = 33.5 bits (75), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 9/76 (11%)
Query: 108 YPSLRQLESEFSELEDNSKRDQCSEISSRKRV---EERRKLSDKDLDRNDECGICMENCT 164
Y SL L ++ + +S +D+ S+ S +K + E+ R+L ++ L C ICM+
Sbjct: 404 YKSLEVLVADLVNAQKDSMQDESSQTSLQKEISTEEQLRRLQEEKL-----CKICMDRNI 458
Query: 165 KMVLPNCGHSL-CVNC 179
+V CGH + C C
Sbjct: 459 AIVFVPCGHLVTCKQC 474
>sp|Q94CT7|XB31_ORYSJ Probable E3 ubiquitin-protein ligase XBOS31 OS=Oryza sativa subsp.
japonica GN=XBOS31 PE=2 SV=1
Length = 446
Score = 33.1 bits (74), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 35/86 (40%), Gaps = 15/86 (17%)
Query: 106 IIYPSLRQLESEFSELEDNSKRDQCSEISSRKRVEERRKLSDKDLD------------RN 153
I++PS + ELE ++K + + R E+R L D++
Sbjct: 258 IVWPSPLKF---IGELEADAKALLEAALMEANREREKRILHGSDINIKGGDEEEESEDEE 314
Query: 154 DECGICMENCTKMVLPNCGHSLCVNC 179
+ C IC E M + CGH +C C
Sbjct: 315 EACNICFEQACSMEVKECGHQMCAAC 340
>sp|O10345|IAP4_NPVOP Putative apoptosis inhibitor 4 OS=Orgyia pseudotsugata multicapsid
polyhedrosis virus GN=IAP4 PE=4 SV=1
Length = 118
Score = 33.1 bits (74), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Query: 153 NDECGICMENCTKMVLPNCGH-SLCVNC 179
NDEC +CM +MV CGH +LCV C
Sbjct: 83 NDECIVCMSEPKRMVAAPCGHYTLCVTC 110
>sp|Q07457|BRE1_YEAST E3 ubiquitin-protein ligase BRE1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=BRE1 PE=1 SV=1
Length = 700
Score = 33.1 bits (74), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 156 CGICMENCTKMVLPNCGHSLCVNC 179
C +C +N M + CGH C NC
Sbjct: 648 CSLCSKNWKNMAIKTCGHVFCENC 671
>sp|B2RYR0|RN168_RAT E3 ubiquitin-protein ligase RNF168 OS=Rattus norvegicus GN=Rnf168
PE=2 SV=1
Length = 564
Score = 33.1 bits (74), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 155 ECGICMENCTKMVLPNCGHSLCVNCFH 181
+CGICME + V C H+LC CF
Sbjct: 15 QCGICMEILVEPVTLPCNHTLCNPCFQ 41
>sp|P93471|COP1_PEA E3 ubiquitin-protein ligase COP1 OS=Pisum sativum GN=COP1 PE=2 SV=1
Length = 672
Score = 33.1 bits (74), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 149 DLDRNDECGICMENCTKMVLPNCGHSLCVNCF 180
DLD++ C ICM+ L CGHS C C
Sbjct: 40 DLDKDFLCPICMQIIKDAFLTACGHSFCYMCI 71
>sp|Q4U4D2|OPN4_PODSI Melanopsin OS=Podarcis sicula GN=OPN4 PE=2 SV=2
Length = 475
Score = 33.1 bits (74), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 3/72 (4%)
Query: 42 QMRLSYSPFAPLVLFMIEWMDYSCTDTVPSYLGLLNILVYKVYVDGMPALSSKERKATLR 101
+ +L+ F +V+F++ W Y+C T+ ++ G L Y +PA+ +K
Sbjct: 235 EWKLAKIAFVAIVVFVLSWSPYACV-TLIAWAGYAKTL--NPYSKSVPAVIAKASAIYNP 291
Query: 102 EFYAIIYPSLRQ 113
YAII+P R+
Sbjct: 292 IIYAIIHPRYRR 303
>sp|Q8IYW5|RN168_HUMAN E3 ubiquitin-protein ligase RNF168 OS=Homo sapiens GN=RNF168 PE=1
SV=1
Length = 571
Score = 33.1 bits (74), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 155 ECGICMENCTKMVLPNCGHSLCVNCFH 181
+CGICME + V C H+LC CF
Sbjct: 15 QCGICMEILVEPVTLPCNHTLCKPCFQ 41
>sp|P22682|CBL_MOUSE E3 ubiquitin-protein ligase CBL OS=Mus musculus GN=Cbl PE=1 SV=3
Length = 913
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 156 CGICMENCTKMVLPNCGHSLCVNCFHDW 183
C IC EN + + CGH +C +C W
Sbjct: 379 CKICAENDKDVKIEPCGHLMCTSCLTSW 406
>sp|Q1XHU0|TRI39_PANTR E3 ubiquitin-protein ligase TRIM39 OS=Pan troglodytes GN=TRIM39
PE=3 SV=1
Length = 518
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 19/37 (51%)
Query: 148 KDLDRNDECGICMENCTKMVLPNCGHSLCVNCFHDWY 184
++L C +C+E + V+ CGH+ C C W+
Sbjct: 21 ENLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWW 57
>sp|Q9HCM9|TRI39_HUMAN E3 ubiquitin-protein ligase TRIM39 OS=Homo sapiens GN=TRIM39 PE=1
SV=2
Length = 518
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 19/37 (51%)
Query: 148 KDLDRNDECGICMENCTKMVLPNCGHSLCVNCFHDWY 184
++L C +C+E + V+ CGH+ C C W+
Sbjct: 21 ENLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWW 57
>sp|B1AUE5|PEX10_MOUSE Peroxisome biogenesis factor 10 OS=Mus musculus GN=Pex10 PE=2 SV=1
Length = 324
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 18/44 (40%)
Query: 140 EERRKLSDKDLDRNDECGICMENCTKMVLPNCGHSLCVNCFHDW 183
R L D+ + R C +C+E CGH C C +W
Sbjct: 255 HRRSSLEDRAVCRTPLCTLCLEERRHSTATPCGHLFCWECITEW 298
>sp|Q9UUF0|PEX10_SCHPO Peroxisome biogenesis factor 10 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=pas4 PE=3 SV=1
Length = 306
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
Query: 122 EDNSKRDQ--CSEISSRKRVEERRKLSDKDLDRNDECGICMENCTKMVLPNCGHSLCVNC 179
NS DQ S I+ + +E++ KL + N +C +CME CGH C +C
Sbjct: 221 HSNSYFDQHTISSITDERDLEDKNKLPFIP-EGNRKCSLCMEFIHCPAATECGHIFCWSC 279
Query: 180 FHDWYPR 186
+ W +
Sbjct: 280 INGWTSK 286
>sp|Q9ESN2|TRI39_MOUSE E3 ubiquitin-protein ligase TRIM39 OS=Mus musculus GN=Trim39 PE=2
SV=1
Length = 488
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 19/37 (51%)
Query: 148 KDLDRNDECGICMENCTKMVLPNCGHSLCVNCFHDWY 184
++L C +C+E + V+ CGH+ C C W+
Sbjct: 21 ENLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWW 57
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.135 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,127,707
Number of Sequences: 539616
Number of extensions: 2601388
Number of successful extensions: 9735
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 112
Number of HSP's that attempted gapping in prelim test: 9560
Number of HSP's gapped (non-prelim): 277
length of query: 186
length of database: 191,569,459
effective HSP length: 111
effective length of query: 75
effective length of database: 131,672,083
effective search space: 9875406225
effective search space used: 9875406225
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)