Query 029884
Match_columns 186
No_of_seqs 182 out of 953
Neff 4.6
Searched_HMMs 46136
Date Fri Mar 29 05:10:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029884.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029884hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1039 Predicted E3 ubiquitin 99.7 1.3E-17 2.9E-22 150.3 0.6 160 19-184 2-200 (344)
2 KOG0823 Predicted E3 ubiquitin 99.1 4E-11 8.6E-16 103.3 1.2 34 151-184 45-78 (230)
3 KOG1002 Nucleotide excision re 99.0 3.1E-11 6.7E-16 114.6 0.1 87 83-183 480-566 (791)
4 PF15227 zf-C3HC4_4: zinc fing 99.0 1.5E-10 3.2E-15 75.3 1.4 30 156-185 1-30 (42)
5 PF13923 zf-C3HC4_2: Zinc fing 98.8 1.7E-09 3.8E-14 68.3 0.6 30 156-185 1-31 (39)
6 KOG0317 Predicted E3 ubiquitin 98.6 1.1E-08 2.4E-13 90.8 2.2 35 151-185 237-271 (293)
7 PHA02926 zinc finger-like prot 98.6 1.1E-08 2.5E-13 88.4 1.5 35 151-185 168-211 (242)
8 PF00097 zf-C3HC4: Zinc finger 98.5 3.5E-08 7.7E-13 62.2 1.0 30 156-185 1-31 (41)
9 PHA02929 N1R/p28-like protein; 98.4 9.5E-08 2.1E-12 82.9 2.3 35 151-185 172-214 (238)
10 smart00504 Ubox Modified RING 98.4 1E-07 2.3E-12 64.5 1.5 33 153-185 1-33 (63)
11 smart00184 RING Ring finger. E 98.4 1.2E-07 2.5E-12 56.5 1.1 30 156-185 1-30 (39)
12 PF13639 zf-RING_2: Ring finge 98.3 6E-08 1.3E-12 62.4 -0.7 32 154-185 1-35 (44)
13 PF13445 zf-RING_UBOX: RING-ty 98.3 1.3E-07 2.9E-12 62.1 0.8 29 156-185 1-33 (43)
14 COG5574 PEX10 RING-finger-cont 98.3 2.7E-07 5.9E-12 81.2 1.6 43 142-185 205-248 (271)
15 KOG2164 Predicted E3 ubiquitin 98.3 3.2E-07 6.8E-12 86.7 1.9 31 153-183 186-216 (513)
16 KOG0320 Predicted E3 ubiquitin 98.3 3.6E-07 7.9E-12 76.7 1.7 33 151-183 129-163 (187)
17 PF13920 zf-C3HC4_3: Zinc fing 98.2 4.2E-07 9.1E-12 60.1 0.8 33 152-184 1-34 (50)
18 cd00162 RING RING-finger (Real 98.2 5.2E-07 1.1E-11 55.5 0.8 31 155-185 1-32 (45)
19 PF14634 zf-RING_5: zinc-RING 98.1 1.2E-06 2.7E-11 56.7 1.4 30 155-184 1-33 (44)
20 PF04564 U-box: U-box domain; 97.9 3.3E-06 7.2E-11 60.2 0.9 35 152-186 3-37 (73)
21 PF12678 zf-rbx1: RING-H2 zinc 97.5 3.3E-05 7.1E-10 55.3 1.1 33 153-185 19-64 (73)
22 PF14835 zf-RING_6: zf-RING of 97.5 3.7E-05 8.1E-10 55.0 1.1 33 152-184 6-39 (65)
23 KOG1001 Helicase-like transcri 97.4 5.1E-05 1.1E-09 74.3 0.5 95 85-183 388-483 (674)
24 COG5152 Uncharacterized conser 97.4 7E-05 1.5E-09 64.6 1.2 31 152-182 195-225 (259)
25 KOG4159 Predicted E3 ubiquitin 97.1 0.00023 5E-09 66.0 1.7 33 150-182 81-113 (398)
26 KOG0978 E3 ubiquitin ligase in 96.7 0.00037 8.1E-09 68.6 -0.6 32 152-183 642-673 (698)
27 PF12861 zf-Apc11: Anaphase-pr 96.6 0.00084 1.8E-08 50.4 1.2 34 152-185 20-66 (85)
28 KOG0802 E3 ubiquitin ligase [P 96.5 0.0012 2.6E-08 62.7 1.9 35 152-186 290-329 (543)
29 PHA03096 p28-like protein; Pro 96.5 0.00076 1.6E-08 60.1 0.4 32 154-185 179-218 (284)
30 COG5243 HRD1 HRD ubiquitin lig 96.1 0.0026 5.7E-08 59.3 1.6 36 151-186 285-333 (491)
31 PF11789 zf-Nse: Zinc-finger o 96.1 0.003 6.4E-08 43.7 1.5 33 152-184 10-43 (57)
32 KOG1813 Predicted E3 ubiquitin 96.0 0.0027 5.9E-08 57.2 1.3 30 154-183 242-271 (313)
33 KOG4628 Predicted E3 ubiquitin 95.7 0.0043 9.4E-08 56.9 1.2 32 154-185 230-264 (348)
34 KOG1814 Predicted E3 ubiquitin 95.5 0.0038 8.3E-08 58.5 0.2 34 151-184 182-218 (445)
35 COG5540 RING-finger-containing 95.4 0.0048 1E-07 56.2 0.5 31 154-184 324-357 (374)
36 KOG2879 Predicted E3 ubiquitin 95.0 0.016 3.4E-07 52.0 2.5 33 150-182 236-269 (298)
37 KOG0311 Predicted E3 ubiquitin 94.9 0.0029 6.2E-08 58.3 -2.5 33 150-182 40-73 (381)
38 KOG1785 Tyrosine kinase negati 94.5 0.014 3E-07 55.1 0.7 31 154-184 370-400 (563)
39 KOG4692 Predicted E3 ubiquitin 94.4 0.029 6.2E-07 52.3 2.5 40 144-183 411-452 (489)
40 KOG4172 Predicted E3 ubiquitin 94.2 0.012 2.6E-07 41.5 -0.2 29 153-181 7-36 (62)
41 KOG1812 Predicted E3 ubiquitin 93.8 0.065 1.4E-06 49.4 3.8 34 151-184 144-181 (384)
42 PF11793 FANCL_C: FANCL C-term 93.6 0.024 5.1E-07 40.4 0.4 33 153-185 2-42 (70)
43 KOG1815 Predicted E3 ubiquitin 92.9 0.055 1.2E-06 50.3 1.8 35 151-185 68-103 (444)
44 PF05883 Baculo_RING: Baculovi 92.1 0.038 8.2E-07 44.7 -0.3 32 152-183 25-65 (134)
45 PF10367 Vps39_2: Vacuolar sor 88.9 0.31 6.8E-06 35.4 2.1 36 146-181 71-108 (109)
46 smart00647 IBR In Between Ring 87.9 0.15 3.2E-06 34.0 -0.2 18 168-185 43-60 (64)
47 KOG3039 Uncharacterized conser 86.7 0.34 7.3E-06 43.4 1.4 34 152-185 220-257 (303)
48 KOG0828 Predicted E3 ubiquitin 86.6 0.24 5.3E-06 47.9 0.5 35 150-184 568-619 (636)
49 KOG2034 Vacuolar sorting prote 85.7 0.58 1.3E-05 47.8 2.6 34 149-182 813-848 (911)
50 KOG0804 Cytoplasmic Zn-finger 85.2 0.46 9.9E-06 45.4 1.5 33 152-184 174-210 (493)
51 KOG3039 Uncharacterized conser 83.7 0.55 1.2E-05 42.1 1.3 33 151-183 41-73 (303)
52 KOG4275 Predicted E3 ubiquitin 82.2 0.33 7.2E-06 44.3 -0.6 28 153-180 300-328 (350)
53 COG5222 Uncharacterized conser 81.6 0.66 1.4E-05 42.7 1.0 30 153-182 274-304 (427)
54 smart00744 RINGv The RING-vari 81.6 0.56 1.2E-05 31.2 0.4 31 155-185 1-38 (49)
55 KOG0826 Predicted E3 ubiquitin 80.8 0.79 1.7E-05 42.3 1.3 33 152-184 299-332 (357)
56 PF01485 IBR: IBR domain; Int 80.6 0.46 9.9E-06 31.5 -0.3 18 168-185 43-60 (64)
57 KOG0825 PHD Zn-finger protein 79.9 0.4 8.6E-06 48.8 -1.0 32 153-184 123-157 (1134)
58 PF04641 Rtf2: Rtf2 RING-finge 79.4 1.4 2.9E-05 38.4 2.2 34 150-183 110-147 (260)
59 KOG3002 Zn finger protein [Gen 76.7 1.2 2.6E-05 40.1 1.1 29 152-181 47-77 (299)
60 PF10571 UPF0547: Uncharacteri 75.5 1.8 4E-05 25.6 1.3 21 155-175 2-24 (26)
61 PF13798 PCYCGC: Protein of un 75.3 0.49 1.1E-05 39.3 -1.6 83 16-99 32-115 (158)
62 KOG1812 Predicted E3 ubiquitin 75.3 0.98 2.1E-05 41.8 0.2 33 152-185 305-343 (384)
63 PF06844 DUF1244: Protein of u 74.3 1.2 2.5E-05 32.4 0.3 12 174-185 11-22 (68)
64 PF14447 Prok-RING_4: Prokaryo 74.0 1.4 2.9E-05 30.8 0.6 32 152-183 6-37 (55)
65 KOG3799 Rab3 effector RIM1 and 72.5 2.5 5.3E-05 34.9 1.8 32 148-183 60-91 (169)
66 COG5236 Uncharacterized conser 71.2 1.9 4.2E-05 40.5 1.1 32 151-182 59-90 (493)
67 KOG0298 DEAD box-containing he 71.1 2.1 4.4E-05 45.6 1.3 34 152-185 1152-1186(1394)
68 KOG4265 Predicted E3 ubiquitin 70.9 2 4.3E-05 39.8 1.1 32 151-182 288-320 (349)
69 KOG1493 Anaphase-promoting com 67.3 1 2.2E-05 33.8 -1.3 32 153-184 20-64 (84)
70 COG5194 APC11 Component of SCF 65.4 2.1 4.6E-05 32.3 0.1 19 167-185 50-68 (88)
71 KOG1815 Predicted E3 ubiquitin 65.3 2.9 6.3E-05 39.0 1.0 34 151-184 224-265 (444)
72 PF01363 FYVE: FYVE zinc finge 65.2 2.3 4.9E-05 29.2 0.2 33 151-183 7-43 (69)
73 KOG1814 Predicted E3 ubiquitin 64.6 3.3 7.3E-05 39.3 1.2 31 151-181 366-402 (445)
74 smart00064 FYVE Protein presen 64.2 6.3 0.00014 26.9 2.3 32 152-183 9-44 (68)
75 KOG1734 Predicted RING-contain 61.8 3.4 7.4E-05 37.5 0.7 34 151-184 222-265 (328)
76 PF02318 FYVE_2: FYVE-type zin 61.7 4.9 0.00011 30.9 1.5 37 145-181 46-87 (118)
77 COG3492 Uncharacterized protei 58.6 2.9 6.2E-05 32.3 -0.3 12 174-185 42-53 (104)
78 KOG0825 PHD Zn-finger protein 58.6 4.6 9.9E-05 41.5 1.1 34 152-185 95-135 (1134)
79 PF14570 zf-RING_4: RING/Ubox 58.3 7.8 0.00017 26.2 1.8 28 156-183 1-32 (48)
80 cd00065 FYVE FYVE domain; Zinc 56.9 7.9 0.00017 25.3 1.7 30 154-183 3-36 (57)
81 TIGR03738 PRTRC_C PRTRC system 56.7 12 0.00027 27.0 2.7 36 73-112 3-40 (66)
82 KOG3268 Predicted E3 ubiquitin 52.1 6.7 0.00014 33.9 0.9 33 153-185 165-204 (234)
83 KOG1952 Transcription factor N 51.7 6.3 0.00014 40.5 0.8 35 151-185 189-227 (950)
84 COG4647 AcxC Acetone carboxyla 49.9 6.1 0.00013 32.5 0.3 22 157-178 61-82 (165)
85 KOG1571 Predicted E3 ubiquitin 48.9 7.4 0.00016 36.2 0.7 25 152-176 304-328 (355)
86 KOG2114 Vacuolar assembly/sort 46.5 9.6 0.00021 39.3 1.1 28 154-181 841-869 (933)
87 COG5219 Uncharacterized conser 46.5 4.7 0.0001 42.4 -1.0 35 151-185 1467-1508(1525)
88 KOG2932 E3 ubiquitin ligase in 45.6 8.2 0.00018 35.8 0.5 36 146-181 82-119 (389)
89 KOG3579 Predicted E3 ubiquitin 45.1 5.6 0.00012 36.5 -0.7 33 152-184 267-303 (352)
90 PF11809 DUF3330: Domain of un 42.7 6 0.00013 28.8 -0.7 35 152-186 10-50 (70)
91 PF07975 C1_4: TFIIH C1-like d 41.9 14 0.0003 25.3 1.0 12 168-179 24-35 (51)
92 KOG0241 Kinesin-like protein [ 41.6 22 0.00048 37.8 2.8 35 10-47 653-694 (1714)
93 smart00290 ZnF_UBP Ubiquitin C 40.5 15 0.00033 23.4 1.1 24 155-178 1-24 (50)
94 KOG1356 Putative transcription 38.8 11 0.00024 38.7 0.3 33 152-184 228-262 (889)
95 KOG2930 SCF ubiquitin ligase, 35.2 13 0.00027 29.4 -0.0 18 168-185 78-95 (114)
96 COG5574 PEX10 RING-finger-cont 34.0 25 0.00054 31.7 1.6 38 148-185 90-132 (271)
97 PF05290 Baculo_IE-1: Baculovi 33.9 19 0.00041 29.5 0.8 31 152-182 79-113 (140)
98 PF08882 Acetone_carb_G: Aceto 31.9 19 0.00041 28.5 0.5 19 158-177 17-35 (112)
99 PF14454 Prok_Ub: Prokaryotic 29.1 65 0.0014 23.0 2.8 35 74-112 5-41 (65)
100 KOG3970 Predicted E3 ubiquitin 26.1 33 0.00071 30.7 1.0 31 154-184 51-83 (299)
101 PF13248 zf-ribbon_3: zinc-rib 24.9 37 0.00081 19.5 0.8 8 154-161 3-10 (26)
102 TIGR00622 ssl1 transcription f 23.5 62 0.0013 25.5 2.0 13 168-180 84-96 (112)
103 KOG2565 Predicted hydrolases o 23.1 33 0.00072 32.8 0.5 38 75-114 138-178 (469)
104 PF08977 BOFC_N: Bypass of For 22.4 56 0.0012 22.5 1.4 30 77-106 2-32 (51)
105 PHA00626 hypothetical protein 21.3 51 0.0011 23.3 1.0 24 154-177 12-35 (59)
106 KOG0006 E3 ubiquitin-protein l 21.0 45 0.00097 31.3 0.9 32 152-183 220-253 (446)
107 PF08403 AA_permease_N: Amino 20.8 59 0.0013 23.8 1.4 14 107-120 39-52 (74)
108 PF02148 zf-UBP: Zn-finger in 20.4 35 0.00076 23.2 0.1 23 156-178 1-24 (63)
109 KOG0006 E3 ubiquitin-protein l 20.0 86 0.0019 29.5 2.5 53 132-184 299-355 (446)
No 1
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=1.3e-17 Score=150.28 Aligned_cols=160 Identities=23% Similarity=0.344 Sum_probs=120.8
Q ss_pred HHhhHHHHHhhhhCCCCCCCceEEEeeccCCc-hhHHHHHHHHhhcCCCCCccccccceeEEEEEEe-eCCCccccchhh
Q 029884 19 EADIQHANTLAAALPRDYGGDFVQMRLSYSPF-APLVLFMIEWMDYSCTDTVPSYLGLLNILVYKVY-VDGMPALSSKER 96 (186)
Q Consensus 19 eadiq~an~la~~~pr~~~g~~~qm~l~y~~~-a~~~lfl~qw~d~~~~~~l~~~lgl~~iliykvy-~DGk~~~s~~~R 96 (186)
+.+++++ |++..+||++.+.--+||+++++. .++..++++|+|+. .|+ .|+.++++|..+ .|+..+++.++|
T Consensus 2 d~~~~~~-tic~~~~~g~c~~g~~cr~~h~~~~~~~~~~~~~~~s~~----~~~-~~~~~~~~~~~~~~~~s~~~s~~~~ 75 (344)
T KOG1039|consen 2 DLSLSQE-TICKYYQKGNCKFGDLCRLSHSLPDEEFATLLTPTTSSA----AAS-TGLSQSLIWANAVADASATMSVSSR 75 (344)
T ss_pred ccccccc-hhhhhcccccccccceeeeeccCchhhcccccccccccc----ccc-cccchhhcccchhhccccccchhcc
Confidence 4678889 999999999999999999999999 99999999999998 776 899999999999 899999999988
Q ss_pred --hhHHHHHhhhhcch---------HHHHhhhhhhhhhc----------cccccchhhhhhhhHHHhhhCCccCC-----
Q 029884 97 --KATLREFYAIIYPS---------LRQLESEFSELEDN----------SKRDQCSEISSRKRVEERRKLSDKDL----- 150 (186)
Q Consensus 97 --kati~efYa~I~ps---------LqqL~~~v~dle~~----------~q~~~~l~~~~kk~~e~~~~l~~~d~----- 150 (186)
+..+++++++.+|+ +-+.+.+..++... .+...+...++.+.........+.+.
T Consensus 76 ~~~~~~~~s~~~~~~s~~~~~~~~~~~~~~~g~~~~~~~~~~~~~c~l~~~~pi~~~~~~~~~~~~~~~~~~~~~e~~~a 155 (344)
T KOG1039|consen 76 PVLTAIRASSSISEPSSTQENPYSNHGQCRFGNGDVTLNGNNPESCGLGTQHPICKRQYKNSMKRGSSCALSSAMERSFA 155 (344)
T ss_pred cchhhhhhhhccccccccccCccccccccccCCcccccccccccccccccccchhHHHHhhhhcccccccchHhhhhccC
Confidence 78899999999998 44444444333222 12222222222211111112223333
Q ss_pred ---CCcccccccccccCCCc--------ccCCCCcccHHHHhccc
Q 029884 151 ---DRNDECGICMENCTKMV--------LPNCGHSLCVNCFHDWY 184 (186)
Q Consensus 151 ---~~e~eC~IClE~~~~~V--------l~~CGH~FC~~Cl~~W~ 184 (186)
..+.+||||||.....+ +|||.|.||.+||..|+
T Consensus 156 ~~~s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr 200 (344)
T KOG1039|consen 156 LQKSSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWR 200 (344)
T ss_pred cCccccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhh
Confidence 34889999999866554 59999999999999998
No 2
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=4e-11 Score=103.30 Aligned_cols=34 Identities=29% Similarity=0.818 Sum_probs=32.3
Q ss_pred CCcccccccccccCCCcccCCCCcccHHHHhccc
Q 029884 151 DRNDECGICMENCTKMVLPNCGHSLCVNCFHDWY 184 (186)
Q Consensus 151 ~~e~eC~IClE~~~~~Vl~~CGH~FC~~Cl~~W~ 184 (186)
...++|+||+|..++||++.|||.|||.||.+|.
T Consensus 45 ~~~FdCNICLd~akdPVvTlCGHLFCWpClyqWl 78 (230)
T KOG0823|consen 45 GGFFDCNICLDLAKDPVVTLCGHLFCWPCLYQWL 78 (230)
T ss_pred CCceeeeeeccccCCCEEeecccceehHHHHHHH
Confidence 4679999999999999999999999999999995
No 3
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=99.05 E-value=3.1e-11 Score=114.59 Aligned_cols=87 Identities=17% Similarity=0.413 Sum_probs=75.3
Q ss_pred EeeCCCccccchhhhhHHHHHhhhhcchHHHHhhhhhhhhhccccccchhhhhhhhHHHhhhCCccCCCCcccccccccc
Q 029884 83 VYVDGMPALSSKERKATLREFYAIIYPSLRQLESEFSELEDNSKRDQCSEISSRKRVEERRKLSDKDLDRNDECGICMEN 162 (186)
Q Consensus 83 vy~DGk~~~s~~~Rkati~efYa~I~psLqqL~~~v~dle~~~q~~~~l~~~~kk~~e~~~~l~~~d~~~e~eC~IClE~ 162 (186)
+|.|.|+.+.+|--.+++.++||+||.+|.||+|.+| |+.+..|++..+ + ..+..++.+|++|.|+
T Consensus 480 LY~dSkrkfntyieeGvvlNNYAnIF~LitRmRQ~aD--------HP~LVl~S~~~n-----~-~~enk~~~~C~lc~d~ 545 (791)
T KOG1002|consen 480 LYKDSKRKFNTYIEEGVVLNNYANIFTLITRMRQAAD--------HPDLVLYSANAN-----L-PDENKGEVECGLCHDP 545 (791)
T ss_pred HHHhhHHhhhhHHhhhhhhhhHHHHHHHHHHHHHhcc--------CcceeeehhhcC-----C-CccccCceeecccCCh
Confidence 5789999999999999999999999999999999988 999998874421 1 2223467899999999
Q ss_pred cCCCcccCCCCcccHHHHhcc
Q 029884 163 CTKMVLPNCGHSLCVNCFHDW 183 (186)
Q Consensus 163 ~~~~Vl~~CGH~FC~~Cl~~W 183 (186)
..+++.+.|-|.||.-|+.++
T Consensus 546 aed~i~s~ChH~FCrlCi~ey 566 (791)
T KOG1002|consen 546 AEDYIESSCHHKFCRLCIKEY 566 (791)
T ss_pred hhhhHhhhhhHHHHHHHHHHH
Confidence 999999999999999999776
No 4
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=98.98 E-value=1.5e-10 Score=75.30 Aligned_cols=30 Identities=33% Similarity=0.872 Sum_probs=26.3
Q ss_pred ccccccccCCCcccCCCCcccHHHHhcccC
Q 029884 156 CGICMENCTKMVLPNCGHSLCVNCFHDWYP 185 (186)
Q Consensus 156 C~IClE~~~~~Vl~~CGH~FC~~Cl~~W~~ 185 (186)
|+||++++++||.++|||+||..||..|..
T Consensus 1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~ 30 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHSFCRSCLERLWK 30 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSEEEHHHHHHHHC
T ss_pred CCccchhhCCccccCCcCHHHHHHHHHHHH
Confidence 899999999999999999999999998754
No 5
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.76 E-value=1.7e-09 Score=68.34 Aligned_cols=30 Identities=33% Similarity=0.983 Sum_probs=26.5
Q ss_pred ccccccccCCC-cccCCCCcccHHHHhcccC
Q 029884 156 CGICMENCTKM-VLPNCGHSLCVNCFHDWYP 185 (186)
Q Consensus 156 C~IClE~~~~~-Vl~~CGH~FC~~Cl~~W~~ 185 (186)
|+||++...++ ++++|||+||.+|+.+|..
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~ 31 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCKECIEKYLE 31 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEHHHHHHHHH
T ss_pred CCCCCCcccCcCEECCCCCchhHHHHHHHHH
Confidence 89999998888 6899999999999999964
No 6
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=1.1e-08 Score=90.82 Aligned_cols=35 Identities=29% Similarity=0.915 Sum_probs=32.4
Q ss_pred CCcccccccccccCCCcccCCCCcccHHHHhcccC
Q 029884 151 DRNDECGICMENCTKMVLPNCGHSLCVNCFHDWYP 185 (186)
Q Consensus 151 ~~e~eC~IClE~~~~~Vl~~CGH~FC~~Cl~~W~~ 185 (186)
+....|.||+|...+|..++|||.|||+||..|..
T Consensus 237 ~a~~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~ 271 (293)
T KOG0317|consen 237 EATRKCSLCLENRSNPSATPCGHIFCWSCILEWCS 271 (293)
T ss_pred CCCCceEEEecCCCCCCcCcCcchHHHHHHHHHHc
Confidence 56789999999999999999999999999999964
No 7
>PHA02926 zinc finger-like protein; Provisional
Probab=98.62 E-value=1.1e-08 Score=88.38 Aligned_cols=35 Identities=34% Similarity=0.899 Sum_probs=29.6
Q ss_pred CCcccccccccccC---------CCcccCCCCcccHHHHhcccC
Q 029884 151 DRNDECGICMENCT---------KMVLPNCGHSLCVNCFHDWYP 185 (186)
Q Consensus 151 ~~e~eC~IClE~~~---------~~Vl~~CGH~FC~~Cl~~W~~ 185 (186)
..+.+||||||... .+++++|+|+||..||.+|+.
T Consensus 168 SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~ 211 (242)
T PHA02926 168 SKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHR 211 (242)
T ss_pred cCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHH
Confidence 45789999998732 367999999999999999975
No 8
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.50 E-value=3.5e-08 Score=62.20 Aligned_cols=30 Identities=43% Similarity=1.116 Sum_probs=27.6
Q ss_pred ccccccccCCCc-ccCCCCcccHHHHhcccC
Q 029884 156 CGICMENCTKMV-LPNCGHSLCVNCFHDWYP 185 (186)
Q Consensus 156 C~IClE~~~~~V-l~~CGH~FC~~Cl~~W~~ 185 (186)
|+||++....++ +++|||.||..|+.+|..
T Consensus 1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~ 31 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLE 31 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEEEHHHHHHHHH
T ss_pred CCcCCccccCCCEEecCCCcchHHHHHHHHH
Confidence 899999999888 899999999999999864
No 9
>PHA02929 N1R/p28-like protein; Provisional
Probab=98.43 E-value=9.5e-08 Score=82.92 Aligned_cols=35 Identities=37% Similarity=1.019 Sum_probs=29.0
Q ss_pred CCcccccccccccCC--------CcccCCCCcccHHHHhcccC
Q 029884 151 DRNDECGICMENCTK--------MVLPNCGHSLCVNCFHDWYP 185 (186)
Q Consensus 151 ~~e~eC~IClE~~~~--------~Vl~~CGH~FC~~Cl~~W~~ 185 (186)
..+.+|+||+|...+ +++++|||.||..||.+|..
T Consensus 172 ~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~ 214 (238)
T PHA02929 172 SKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKK 214 (238)
T ss_pred CCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHh
Confidence 456899999997433 36789999999999999975
No 10
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.41 E-value=1e-07 Score=64.45 Aligned_cols=33 Identities=18% Similarity=0.315 Sum_probs=30.3
Q ss_pred cccccccccccCCCcccCCCCcccHHHHhcccC
Q 029884 153 NDECGICMENCTKMVLPNCGHSLCVNCFHDWYP 185 (186)
Q Consensus 153 e~eC~IClE~~~~~Vl~~CGH~FC~~Cl~~W~~ 185 (186)
++.|+||.++..+||+..|||+||.+||.+|..
T Consensus 1 ~~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~ 33 (63)
T smart00504 1 EFLCPISLEVMKDPVILPSGQTYERRAIEKWLL 33 (63)
T ss_pred CcCCcCCCCcCCCCEECCCCCEEeHHHHHHHHH
Confidence 467999999999999999999999999999864
No 11
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.38 E-value=1.2e-07 Score=56.51 Aligned_cols=30 Identities=37% Similarity=1.072 Sum_probs=27.3
Q ss_pred ccccccccCCCcccCCCCcccHHHHhcccC
Q 029884 156 CGICMENCTKMVLPNCGHSLCVNCFHDWYP 185 (186)
Q Consensus 156 C~IClE~~~~~Vl~~CGH~FC~~Cl~~W~~ 185 (186)
|+||++....++.++|||.||..|+..|..
T Consensus 1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~ 30 (39)
T smart00184 1 CPICLEELKDPVVLPCGHTFCRSCIRKWLK 30 (39)
T ss_pred CCcCccCCCCcEEecCCChHHHHHHHHHHH
Confidence 899999988888899999999999999863
No 12
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=98.35 E-value=6e-08 Score=62.44 Aligned_cols=32 Identities=41% Similarity=0.990 Sum_probs=26.1
Q ss_pred cccccccccc---CCCcccCCCCcccHHHHhcccC
Q 029884 154 DECGICMENC---TKMVLPNCGHSLCVNCFHDWYP 185 (186)
Q Consensus 154 ~eC~IClE~~---~~~Vl~~CGH~FC~~Cl~~W~~ 185 (186)
.+|+||++.. ..++..+|||.||.+|+..|..
T Consensus 1 d~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~ 35 (44)
T PF13639_consen 1 DECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLK 35 (44)
T ss_dssp -CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHH
T ss_pred CCCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHH
Confidence 3799999875 3566677999999999999964
No 13
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.34 E-value=1.3e-07 Score=62.14 Aligned_cols=29 Identities=31% Similarity=0.865 Sum_probs=18.5
Q ss_pred ccccccccCC----CcccCCCCcccHHHHhcccC
Q 029884 156 CGICMENCTK----MVLPNCGHSLCVNCFHDWYP 185 (186)
Q Consensus 156 C~IClE~~~~----~Vl~~CGH~FC~~Cl~~W~~ 185 (186)
|+||.| +.. |++++|||+||.+|+.++.+
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~ 33 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSK 33 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHH
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHh
Confidence 899999 554 67666999999999998753
No 14
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.28 E-value=2.7e-07 Score=81.24 Aligned_cols=43 Identities=23% Similarity=0.543 Sum_probs=36.6
Q ss_pred hhhCCccCCCCcccccccccccCCCcccCCCCcccHHHHhc-ccC
Q 029884 142 RRKLSDKDLDRNDECGICMENCTKMVLPNCGHSLCVNCFHD-WYP 185 (186)
Q Consensus 142 ~~~l~~~d~~~e~eC~IClE~~~~~Vl~~CGH~FC~~Cl~~-W~~ 185 (186)
+..++-+. +.+..|.||+|....|+-+.|||.|||.||.. |-+
T Consensus 205 kn~~pfip-~~d~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~ 248 (271)
T COG5574 205 KNGLPFIP-LADYKCFLCLEEPEVPSCTPCGHLFCLSCLLISWTK 248 (271)
T ss_pred cccCCccc-ccccceeeeecccCCcccccccchhhHHHHHHHHHh
Confidence 33455555 78999999999999999999999999999998 854
No 15
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.27 E-value=3.2e-07 Score=86.73 Aligned_cols=31 Identities=35% Similarity=0.843 Sum_probs=29.3
Q ss_pred cccccccccccCCCcccCCCCcccHHHHhcc
Q 029884 153 NDECGICMENCTKMVLPNCGHSLCVNCFHDW 183 (186)
Q Consensus 153 e~eC~IClE~~~~~Vl~~CGH~FC~~Cl~~W 183 (186)
+..||||++....|+.++|||.||++||-++
T Consensus 186 ~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy 216 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPVRTNCGHIFCGPCILQY 216 (513)
T ss_pred CCcCCcccCCCCcccccccCceeeHHHHHHH
Confidence 7899999999999999999999999999875
No 16
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.25 E-value=3.6e-07 Score=76.68 Aligned_cols=33 Identities=30% Similarity=0.862 Sum_probs=27.3
Q ss_pred CCcccccccccccCC--CcccCCCCcccHHHHhcc
Q 029884 151 DRNDECGICMENCTK--MVLPNCGHSLCVNCFHDW 183 (186)
Q Consensus 151 ~~e~eC~IClE~~~~--~Vl~~CGH~FC~~Cl~~W 183 (186)
+..+.|||||+...+ +|.++|||.||..||++-
T Consensus 129 ~~~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~a 163 (187)
T KOG0320|consen 129 EGTYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDA 163 (187)
T ss_pred ccccCCCceecchhhccccccccchhHHHHHHHHH
Confidence 455899999988654 567999999999999864
No 17
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.20 E-value=4.2e-07 Score=60.06 Aligned_cols=33 Identities=39% Similarity=0.902 Sum_probs=28.8
Q ss_pred CcccccccccccCCCcccCCCCc-ccHHHHhccc
Q 029884 152 RNDECGICMENCTKMVLPNCGHS-LCVNCFHDWY 184 (186)
Q Consensus 152 ~e~eC~IClE~~~~~Vl~~CGH~-FC~~Cl~~W~ 184 (186)
++..|.||++...++++.+|||. ||..|+.+|.
T Consensus 1 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~ 34 (50)
T PF13920_consen 1 EDEECPICFENPRDVVLLPCGHLCFCEECAERLL 34 (50)
T ss_dssp -HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHH
T ss_pred CcCCCccCCccCCceEEeCCCChHHHHHHhHHhc
Confidence 36799999999999999999999 9999999984
No 18
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.17 E-value=5.2e-07 Score=55.53 Aligned_cols=31 Identities=42% Similarity=1.125 Sum_probs=25.4
Q ss_pred cccccccccCC-CcccCCCCcccHHHHhcccC
Q 029884 155 ECGICMENCTK-MVLPNCGHSLCVNCFHDWYP 185 (186)
Q Consensus 155 eC~IClE~~~~-~Vl~~CGH~FC~~Cl~~W~~ 185 (186)
+|+||++.... .++++|||.||..|+..|..
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~ 32 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLK 32 (45)
T ss_pred CCCcCchhhhCceEecCCCChhcHHHHHHHHH
Confidence 59999988744 44566999999999999864
No 19
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.10 E-value=1.2e-06 Score=56.73 Aligned_cols=30 Identities=33% Similarity=0.920 Sum_probs=25.6
Q ss_pred ccccccccc---CCCcccCCCCcccHHHHhccc
Q 029884 155 ECGICMENC---TKMVLPNCGHSLCVNCFHDWY 184 (186)
Q Consensus 155 eC~IClE~~---~~~Vl~~CGH~FC~~Cl~~W~ 184 (186)
+|+||.+.. ..+++++|||.||.+|+..+.
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~ 33 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLK 33 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhc
Confidence 599999876 357789999999999998764
No 20
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=97.92 E-value=3.3e-06 Score=60.19 Aligned_cols=35 Identities=20% Similarity=0.294 Sum_probs=30.4
Q ss_pred CcccccccccccCCCcccCCCCcccHHHHhcccCC
Q 029884 152 RNDECGICMENCTKMVLPNCGHSLCVNCFHDWYPR 186 (186)
Q Consensus 152 ~e~eC~IClE~~~~~Vl~~CGH~FC~~Cl~~W~~r 186 (186)
+++.|+|+.+++.+||++++||+|+..||.+|..+
T Consensus 3 ~~f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~ 37 (73)
T PF04564_consen 3 DEFLCPITGELMRDPVILPSGHTYERSAIERWLEQ 37 (73)
T ss_dssp GGGB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCT
T ss_pred cccCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHc
Confidence 47899999999999999999999999999999753
No 21
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=97.53 E-value=3.3e-05 Score=55.34 Aligned_cols=33 Identities=33% Similarity=0.887 Sum_probs=25.7
Q ss_pred cccccccccccC-------------CCcccCCCCcccHHHHhcccC
Q 029884 153 NDECGICMENCT-------------KMVLPNCGHSLCVNCFHDWYP 185 (186)
Q Consensus 153 e~eC~IClE~~~-------------~~Vl~~CGH~FC~~Cl~~W~~ 185 (186)
+..|+||++... ..+++.|||.|...||.+|..
T Consensus 19 ~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~ 64 (73)
T PF12678_consen 19 DDNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLK 64 (73)
T ss_dssp CSBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHT
T ss_pred CCcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHh
Confidence 445999998762 234567999999999999975
No 22
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=97.49 E-value=3.7e-05 Score=55.03 Aligned_cols=33 Identities=30% Similarity=0.714 Sum_probs=19.2
Q ss_pred CcccccccccccCCCc-ccCCCCcccHHHHhccc
Q 029884 152 RNDECGICMENCTKMV-LPNCGHSLCVNCFHDWY 184 (186)
Q Consensus 152 ~e~eC~IClE~~~~~V-l~~CGH~FC~~Cl~~W~ 184 (186)
+-..|++|.+....|| +.+|.|+||+.|+.+-.
T Consensus 6 ~lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~ 39 (65)
T PF14835_consen 6 ELLRCSICFDILKEPVCLGGCEHIFCSSCIRDCI 39 (65)
T ss_dssp HTTS-SSS-S--SS-B---SSS--B-TTTGGGGT
T ss_pred HhcCCcHHHHHhcCCceeccCccHHHHHHhHHhc
Confidence 3468999999999887 69999999999998753
No 23
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=97.36 E-value=5.1e-05 Score=74.29 Aligned_cols=95 Identities=19% Similarity=0.313 Sum_probs=61.2
Q ss_pred eCCCccccchhhhhHHHHHhhhhcchHHHHhhhhhhhh-hccccccchhhhhhhhHHHhhhCCccCCCCccccccccccc
Q 029884 85 VDGMPALSSKERKATLREFYAIIYPSLRQLESEFSELE-DNSKRDQCSEISSRKRVEERRKLSDKDLDRNDECGICMENC 163 (186)
Q Consensus 85 ~DGk~~~s~~~Rkati~efYa~I~psLqqL~~~v~dle-~~~q~~~~l~~~~kk~~e~~~~l~~~d~~~e~eC~IClE~~ 163 (186)
.+++.+++.+-..+++...|+.|+-.|+||++..++.. ...+ ..+.+-.+.......+....+. ....|+||++ .
T Consensus 388 ~~~~~~~~~~~~~~~~~~~Y~~~l~~lLrlrq~c~h~~lv~~~-~~~~~~~~~~~~~~~~~i~~l~--~~~~c~ic~~-~ 463 (674)
T KOG1001|consen 388 ANSRNQFSNYANEGTVSSTYAFFLKNLLRLRQACDHSLLVMYE-MDSLGDSGSAAALIIRLIVDLS--VSHWCHICCD-L 463 (674)
T ss_pred hhhhhHHHHHhhhchhhhhHHHHHHHHHHHHHHccchHhhhhh-hhccccccccchHHHHHHHHHh--hccccccccc-c
Confidence 56777788888889999999999999999998876521 1111 0111100000000011111111 1189999999 7
Q ss_pred CCCcccCCCCcccHHHHhcc
Q 029884 164 TKMVLPNCGHSLCVNCFHDW 183 (186)
Q Consensus 164 ~~~Vl~~CGH~FC~~Cl~~W 183 (186)
..++.+.|||.||.+|+.+-
T Consensus 464 ~~~~it~c~h~~c~~c~~~~ 483 (674)
T KOG1001|consen 464 DSFFITRCGHDFCVECLKKS 483 (674)
T ss_pred ccceeecccchHHHHHHHhc
Confidence 77888999999999999864
No 24
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=97.35 E-value=7e-05 Score=64.60 Aligned_cols=31 Identities=35% Similarity=0.761 Sum_probs=27.8
Q ss_pred CcccccccccccCCCcccCCCCcccHHHHhc
Q 029884 152 RNDECGICMENCTKMVLPNCGHSLCVNCFHD 182 (186)
Q Consensus 152 ~e~eC~IClE~~~~~Vl~~CGH~FC~~Cl~~ 182 (186)
--+.|+||-+.+..||+++|||.||..|...
T Consensus 195 IPF~C~iCKkdy~spvvt~CGH~FC~~Cai~ 225 (259)
T COG5152 195 IPFLCGICKKDYESPVVTECGHSFCSLCAIR 225 (259)
T ss_pred CceeehhchhhccchhhhhcchhHHHHHHHH
Confidence 3479999999999999999999999999764
No 25
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.08 E-value=0.00023 Score=66.02 Aligned_cols=33 Identities=30% Similarity=0.800 Sum_probs=30.1
Q ss_pred CCCcccccccccccCCCcccCCCCcccHHHHhc
Q 029884 150 LDRNDECGICMENCTKMVLPNCGHSLCVNCFHD 182 (186)
Q Consensus 150 ~~~e~eC~IClE~~~~~Vl~~CGH~FC~~Cl~~ 182 (186)
+..+++|.||++...+||.++|||+||..||..
T Consensus 81 ~~sef~c~vc~~~l~~pv~tpcghs~c~~Cl~r 113 (398)
T KOG4159|consen 81 IRSEFECCVCSRALYPPVVTPCGHSFCLECLDR 113 (398)
T ss_pred ccchhhhhhhHhhcCCCccccccccccHHHHHH
Confidence 367899999999999999999999999999764
No 26
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=96.65 E-value=0.00037 Score=68.56 Aligned_cols=32 Identities=25% Similarity=0.749 Sum_probs=28.7
Q ss_pred CcccccccccccCCCcccCCCCcccHHHHhcc
Q 029884 152 RNDECGICMENCTKMVLPNCGHSLCVNCFHDW 183 (186)
Q Consensus 152 ~e~eC~IClE~~~~~Vl~~CGH~FC~~Cl~~W 183 (186)
+-..||.|-.-+.+.|+++|||.||-.|++..
T Consensus 642 ~~LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r 673 (698)
T KOG0978|consen 642 ELLKCSVCNTRWKDAVITKCGHVFCEECVQTR 673 (698)
T ss_pred hceeCCCccCchhhHHHHhcchHHHHHHHHHH
Confidence 45689999988999999999999999999864
No 27
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=96.62 E-value=0.00084 Score=50.38 Aligned_cols=34 Identities=29% Similarity=0.839 Sum_probs=25.7
Q ss_pred CcccccccccccC-------------CCcccCCCCcccHHHHhcccC
Q 029884 152 RNDECGICMENCT-------------KMVLPNCGHSLCVNCFHDWYP 185 (186)
Q Consensus 152 ~e~eC~IClE~~~-------------~~Vl~~CGH~FC~~Cl~~W~~ 185 (186)
++..||||...+. +.|.-.|+|.|...||.+|.+
T Consensus 20 ~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~ 66 (85)
T PF12861_consen 20 NDDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLS 66 (85)
T ss_pred CCCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHc
Confidence 4677888765433 345668999999999999975
No 28
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.52 E-value=0.0012 Score=62.72 Aligned_cols=35 Identities=29% Similarity=0.758 Sum_probs=28.8
Q ss_pred CcccccccccccCC-----CcccCCCCcccHHHHhcccCC
Q 029884 152 RNDECGICMENCTK-----MVLPNCGHSLCVNCFHDWYPR 186 (186)
Q Consensus 152 ~e~eC~IClE~~~~-----~Vl~~CGH~FC~~Cl~~W~~r 186 (186)
.+..|.||+|.... +-...|||.||..|++.|..|
T Consensus 290 ~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er 329 (543)
T KOG0802|consen 290 SDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFER 329 (543)
T ss_pred cCCeeeeechhhccccccccceeecccchHHHHHHHHHHH
Confidence 47799999987554 455669999999999999764
No 29
>PHA03096 p28-like protein; Provisional
Probab=96.51 E-value=0.00076 Score=60.09 Aligned_cols=32 Identities=31% Similarity=0.740 Sum_probs=27.2
Q ss_pred ccccccccccC--------CCcccCCCCcccHHHHhcccC
Q 029884 154 DECGICMENCT--------KMVLPNCGHSLCVNCFHDWYP 185 (186)
Q Consensus 154 ~eC~IClE~~~--------~~Vl~~CGH~FC~~Cl~~W~~ 185 (186)
.+|+||||... ..++++|.|.||..|+..|++
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~ 218 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMT 218 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHH
Confidence 78999998632 356899999999999999975
No 30
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=96.10 E-value=0.0026 Score=59.29 Aligned_cols=36 Identities=31% Similarity=0.825 Sum_probs=27.7
Q ss_pred CCcccccccccc-cCC------------CcccCCCCcccHHHHhcccCC
Q 029884 151 DRNDECGICMEN-CTK------------MVLPNCGHSLCVNCFHDWYPR 186 (186)
Q Consensus 151 ~~e~eC~IClE~-~~~------------~Vl~~CGH~FC~~Cl~~W~~r 186 (186)
..+..|.||||. +.. |--.+|||.+-..|++.|..|
T Consensus 285 n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ER 333 (491)
T COG5243 285 NSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLER 333 (491)
T ss_pred CCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHh
Confidence 456799999965 332 234569999999999999765
No 31
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=96.10 E-value=0.003 Score=43.69 Aligned_cols=33 Identities=18% Similarity=0.396 Sum_probs=24.6
Q ss_pred CcccccccccccCCCcc-cCCCCcccHHHHhccc
Q 029884 152 RNDECGICMENCTKMVL-PNCGHSLCVNCFHDWY 184 (186)
Q Consensus 152 ~e~eC~IClE~~~~~Vl-~~CGH~FC~~Cl~~W~ 184 (186)
....|||.+..+.+||. ..|||+|..+.|.+|.
T Consensus 10 ~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i 43 (57)
T PF11789_consen 10 ISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYI 43 (57)
T ss_dssp --SB-TTTSSB-SSEEEESSS--EEEHHHHHHHC
T ss_pred eccCCCCcCChhhCCcCcCCCCCeecHHHHHHHH
Confidence 46799999999999986 4899999999999987
No 32
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.02 E-value=0.0027 Score=57.24 Aligned_cols=30 Identities=30% Similarity=0.608 Sum_probs=27.0
Q ss_pred ccccccccccCCCcccCCCCcccHHHHhcc
Q 029884 154 DECGICMENCTKMVLPNCGHSLCVNCFHDW 183 (186)
Q Consensus 154 ~eC~IClE~~~~~Vl~~CGH~FC~~Cl~~W 183 (186)
+-|.||-+.+..||+++|||.||..|-..-
T Consensus 242 f~c~icr~~f~~pVvt~c~h~fc~~ca~~~ 271 (313)
T KOG1813|consen 242 FKCFICRKYFYRPVVTKCGHYFCEVCALKP 271 (313)
T ss_pred ccccccccccccchhhcCCceeehhhhccc
Confidence 569999999999999999999999997643
No 33
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.69 E-value=0.0043 Score=56.88 Aligned_cols=32 Identities=38% Similarity=1.000 Sum_probs=26.7
Q ss_pred ccccccccccCC---CcccCCCCcccHHHHhcccC
Q 029884 154 DECGICMENCTK---MVLPNCGHSLCVNCFHDWYP 185 (186)
Q Consensus 154 ~eC~IClE~~~~---~Vl~~CGH~FC~~Cl~~W~~ 185 (186)
+.|.||+|-+.+ ....+|+|.|-..||..|..
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~ 264 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLT 264 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHh
Confidence 499999987653 44577999999999999975
No 34
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.51 E-value=0.0038 Score=58.47 Aligned_cols=34 Identities=26% Similarity=0.789 Sum_probs=28.5
Q ss_pred CCcccccccccccCC---CcccCCCCcccHHHHhccc
Q 029884 151 DRNDECGICMENCTK---MVLPNCGHSLCVNCFHDWY 184 (186)
Q Consensus 151 ~~e~eC~IClE~~~~---~Vl~~CGH~FC~~Cl~~W~ 184 (186)
..-+.|.||++.... .+.++|+|.||.+|+.+++
T Consensus 182 ~slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~ 218 (445)
T KOG1814|consen 182 NSLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYF 218 (445)
T ss_pred hhcccceeeehhhcCcceeeecccchHHHHHHHHHHH
Confidence 356899999988665 5578899999999999875
No 35
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.42 E-value=0.0048 Score=56.20 Aligned_cols=31 Identities=39% Similarity=0.927 Sum_probs=26.0
Q ss_pred ccccccccccCC---CcccCCCCcccHHHHhccc
Q 029884 154 DECGICMENCTK---MVLPNCGHSLCVNCFHDWY 184 (186)
Q Consensus 154 ~eC~IClE~~~~---~Vl~~CGH~FC~~Cl~~W~ 184 (186)
.+|.|||+.+.+ .+.++|.|.|-..|+.+|.
T Consensus 324 veCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~ 357 (374)
T COG5540 324 VECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWL 357 (374)
T ss_pred ceEEEEhhhhcccceEEEeccCceechhHHHHHH
Confidence 699999987543 4457799999999999995
No 36
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.02 E-value=0.016 Score=52.04 Aligned_cols=33 Identities=30% Similarity=0.624 Sum_probs=26.5
Q ss_pred CCCcccccccccccCCCcc-cCCCCcccHHHHhc
Q 029884 150 LDRNDECGICMENCTKMVL-PNCGHSLCVNCFHD 182 (186)
Q Consensus 150 ~~~e~eC~IClE~~~~~Vl-~~CGH~FC~~Cl~~ 182 (186)
...+.+|++|-+..+.|-. ..|||.+|-.|+..
T Consensus 236 ~t~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~t 269 (298)
T KOG2879|consen 236 GTSDTECPVCGEPPTIPHVIGKCGHIYCYYCIAT 269 (298)
T ss_pred ccCCceeeccCCCCCCCeeeccccceeehhhhhh
Confidence 3567899999988776554 44999999999974
No 37
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.92 E-value=0.0029 Score=58.32 Aligned_cols=33 Identities=30% Similarity=0.715 Sum_probs=27.1
Q ss_pred CCCcccccccccccCC-CcccCCCCcccHHHHhc
Q 029884 150 LDRNDECGICMENCTK-MVLPNCGHSLCVNCFHD 182 (186)
Q Consensus 150 ~~~e~eC~IClE~~~~-~Vl~~CGH~FC~~Cl~~ 182 (186)
+..++.|+||+++.+. ...+.|+|-||..||-.
T Consensus 40 ~~~~v~c~icl~llk~tmttkeClhrfc~~ci~~ 73 (381)
T KOG0311|consen 40 FDIQVICPICLSLLKKTMTTKECLHRFCFDCIWK 73 (381)
T ss_pred hhhhhccHHHHHHHHhhcccHHHHHHHHHHHHHH
Confidence 3468999999998654 55678999999999964
No 38
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=94.48 E-value=0.014 Score=55.14 Aligned_cols=31 Identities=39% Similarity=1.015 Sum_probs=28.4
Q ss_pred ccccccccccCCCcccCCCCcccHHHHhccc
Q 029884 154 DECGICMENCTKMVLPNCGHSLCVNCFHDWY 184 (186)
Q Consensus 154 ~eC~IClE~~~~~Vl~~CGH~FC~~Cl~~W~ 184 (186)
..|-||-|..+++-+-+|||.+|..|+..|-
T Consensus 370 eLCKICaendKdvkIEPCGHLlCt~CLa~WQ 400 (563)
T KOG1785|consen 370 ELCKICAENDKDVKIEPCGHLLCTSCLAAWQ 400 (563)
T ss_pred HHHHHhhccCCCcccccccchHHHHHHHhhc
Confidence 3899999999988888899999999999995
No 39
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.35 E-value=0.029 Score=52.31 Aligned_cols=40 Identities=28% Similarity=0.654 Sum_probs=32.1
Q ss_pred hCCccCC--CCcccccccccccCCCcccCCCCcccHHHHhcc
Q 029884 144 KLSDKDL--DRNDECGICMENCTKMVLPNCGHSLCVNCFHDW 183 (186)
Q Consensus 144 ~l~~~d~--~~e~eC~IClE~~~~~Vl~~CGH~FC~~Cl~~W 183 (186)
...+++. .++..|+||.--....|..+|||--|..||.+.
T Consensus 411 ~~~~~~lp~sEd~lCpICyA~pi~Avf~PC~H~SC~~CI~qH 452 (489)
T KOG4692|consen 411 ESFNKDLPDSEDNLCPICYAGPINAVFAPCSHRSCYGCITQH 452 (489)
T ss_pred HhhcCCCCCcccccCcceecccchhhccCCCCchHHHHHHHH
Confidence 3445554 356799999988777888899999999999875
No 40
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.22 E-value=0.012 Score=41.49 Aligned_cols=29 Identities=45% Similarity=0.925 Sum_probs=25.3
Q ss_pred cccccccccccCCCcccCCCCc-ccHHHHh
Q 029884 153 NDECGICMENCTKMVLPNCGHS-LCVNCFH 181 (186)
Q Consensus 153 e~eC~IClE~~~~~Vl~~CGH~-FC~~Cl~ 181 (186)
+.||.||+|...+.|+-.|||. +|..|-.
T Consensus 7 ~dECTICye~pvdsVlYtCGHMCmCy~Cg~ 36 (62)
T KOG4172|consen 7 SDECTICYEHPVDSVLYTCGHMCMCYACGL 36 (62)
T ss_pred ccceeeeccCcchHHHHHcchHHhHHHHHH
Confidence 4799999999999999999996 7888854
No 41
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.82 E-value=0.065 Score=49.45 Aligned_cols=34 Identities=32% Similarity=0.882 Sum_probs=25.0
Q ss_pred CCcccccccc-cccCC---CcccCCCCcccHHHHhccc
Q 029884 151 DRNDECGICM-ENCTK---MVLPNCGHSLCVNCFHDWY 184 (186)
Q Consensus 151 ~~e~eC~ICl-E~~~~---~Vl~~CGH~FC~~Cl~~W~ 184 (186)
....+|+||+ +.... ..+..|||.||..|..++.
T Consensus 144 ~~~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~i 181 (384)
T KOG1812|consen 144 LPKEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHI 181 (384)
T ss_pred cccccCccCccccccHhhhHHHhcccchhhhHHhHHHh
Confidence 3567999999 44221 2257799999999998764
No 42
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=93.63 E-value=0.024 Score=40.42 Aligned_cols=33 Identities=33% Similarity=0.939 Sum_probs=15.2
Q ss_pred cccccccccccC------CCcc--cCCCCcccHHHHhcccC
Q 029884 153 NDECGICMENCT------KMVL--PNCGHSLCVNCFHDWYP 185 (186)
Q Consensus 153 e~eC~IClE~~~------~~Vl--~~CGH~FC~~Cl~~W~~ 185 (186)
+.+|+||++... ..+- ++|++.|-..||.+|+.
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~ 42 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFL 42 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHH
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHH
Confidence 578999997533 1333 47999999999999963
No 43
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.88 E-value=0.055 Score=50.32 Aligned_cols=35 Identities=29% Similarity=0.862 Sum_probs=29.6
Q ss_pred CCcccccccccccCC-CcccCCCCcccHHHHhcccC
Q 029884 151 DRNDECGICMENCTK-MVLPNCGHSLCVNCFHDWYP 185 (186)
Q Consensus 151 ~~e~eC~IClE~~~~-~Vl~~CGH~FC~~Cl~~W~~ 185 (186)
....+|+||.+.... .+...|||.||..|...+.+
T Consensus 68 ~~~~~c~ic~~~~~~~~~~~~c~H~~c~~cw~~yl~ 103 (444)
T KOG1815|consen 68 KGDVQCGICVESYDGEIIGLGCGHPFCPPCWTGYLG 103 (444)
T ss_pred CccccCCcccCCCcchhhhcCCCcHHHHHHHHHHhh
Confidence 456899999998874 77889999999999987654
No 44
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=92.14 E-value=0.038 Score=44.71 Aligned_cols=32 Identities=28% Similarity=0.740 Sum_probs=24.5
Q ss_pred CcccccccccccC---CCcccCCC------CcccHHHHhcc
Q 029884 152 RNDECGICMENCT---KMVLPNCG------HSLCVNCFHDW 183 (186)
Q Consensus 152 ~e~eC~IClE~~~---~~Vl~~CG------H~FC~~Cl~~W 183 (186)
...||.||++... .+|...|| |.||..|+..|
T Consensus 25 ~~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw 65 (134)
T PF05883_consen 25 CTVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRW 65 (134)
T ss_pred cCeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHH
Confidence 3789999997532 44445566 78999999999
No 45
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=88.87 E-value=0.31 Score=35.42 Aligned_cols=36 Identities=19% Similarity=0.543 Sum_probs=26.8
Q ss_pred CccCCCCcccccccccccC--CCcccCCCCcccHHHHh
Q 029884 146 SDKDLDRNDECGICMENCT--KMVLPNCGHSLCVNCFH 181 (186)
Q Consensus 146 ~~~d~~~e~eC~IClE~~~--~~Vl~~CGH~FC~~Cl~ 181 (186)
..+.+.++..|++|-.... ..+.-+|||.|...|+.
T Consensus 71 ~~v~i~~~~~C~vC~k~l~~~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 71 RSVVITESTKCSVCGKPLGNSVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred ceEEECCCCCccCcCCcCCCceEEEeCCCeEEeccccc
Confidence 4445567888999987643 34456799999999985
No 46
>smart00647 IBR In Between Ring fingers. the domains occurs between pairs og RING fingers
Probab=87.89 E-value=0.15 Score=34.01 Aligned_cols=18 Identities=39% Similarity=1.089 Sum_probs=15.4
Q ss_pred ccCCCCcccHHHHhcccC
Q 029884 168 LPNCGHSLCVNCFHDWYP 185 (186)
Q Consensus 168 l~~CGH~FC~~Cl~~W~~ 185 (186)
-+.|||.||+.|...|..
T Consensus 43 C~~C~~~fC~~C~~~~H~ 60 (64)
T smart00647 43 CPKCGFSFCFRCKVPWHS 60 (64)
T ss_pred CCCCCCeECCCCCCcCCC
Confidence 357999999999999964
No 47
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.67 E-value=0.34 Score=43.36 Aligned_cols=34 Identities=21% Similarity=0.399 Sum_probs=27.8
Q ss_pred CcccccccccccCC----CcccCCCCcccHHHHhcccC
Q 029884 152 RNDECGICMENCTK----MVLPNCGHSLCVNCFHDWYP 185 (186)
Q Consensus 152 ~e~eC~IClE~~~~----~Vl~~CGH~FC~~Cl~~W~~ 185 (186)
..+.||||.+..++ .|+.+|||+||.+|.+....
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir 257 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIR 257 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhcc
Confidence 56899999987543 56889999999999987653
No 48
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=86.58 E-value=0.24 Score=47.93 Aligned_cols=35 Identities=29% Similarity=0.791 Sum_probs=27.0
Q ss_pred CCCcccccccccccC-----------------CCcccCCCCcccHHHHhccc
Q 029884 150 LDRNDECGICMENCT-----------------KMVLPNCGHSLCVNCFHDWY 184 (186)
Q Consensus 150 ~~~e~eC~IClE~~~-----------------~~Vl~~CGH~FC~~Cl~~W~ 184 (186)
.++...|.|||.... .-.+++|.|.|-..|+.+|.
T Consensus 568 ~~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WM 619 (636)
T KOG0828|consen 568 VRRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWM 619 (636)
T ss_pred hhccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHH
Confidence 457789999995321 13367899999999999995
No 49
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.65 E-value=0.58 Score=47.76 Aligned_cols=34 Identities=24% Similarity=0.564 Sum_probs=26.6
Q ss_pred CCCCcccccccccc--cCCCcccCCCCcccHHHHhc
Q 029884 149 DLDRNDECGICMEN--CTKMVLPNCGHSLCVNCFHD 182 (186)
Q Consensus 149 d~~~e~eC~IClE~--~~~~Vl~~CGH~FC~~Cl~~ 182 (186)
-.+...+|.+|..+ ..+.++-+|||.|-+.|+.+
T Consensus 813 v~ep~d~C~~C~~~ll~~pF~vf~CgH~FH~~Cl~~ 848 (911)
T KOG2034|consen 813 VLEPQDSCDHCGRPLLIKPFYVFPCGHCFHRDCLIR 848 (911)
T ss_pred EecCccchHHhcchhhcCcceeeeccchHHHHHHHH
Confidence 34688999999876 33445667999999999975
No 50
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=85.18 E-value=0.46 Score=45.38 Aligned_cols=33 Identities=24% Similarity=0.766 Sum_probs=25.8
Q ss_pred CcccccccccccC----CCcccCCCCcccHHHHhccc
Q 029884 152 RNDECGICMENCT----KMVLPNCGHSLCVNCFHDWY 184 (186)
Q Consensus 152 ~e~eC~IClE~~~----~~Vl~~CGH~FC~~Cl~~W~ 184 (186)
+--.||+|+|-.- ..+...|.|+|--.|+..|-
T Consensus 174 ELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~ 210 (493)
T KOG0804|consen 174 ELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWW 210 (493)
T ss_pred cCCCcchhHhhcCccccceeeeecccccchHHHhhcc
Confidence 4459999997532 23567899999999999983
No 51
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.66 E-value=0.55 Score=42.05 Aligned_cols=33 Identities=15% Similarity=0.345 Sum_probs=29.1
Q ss_pred CCcccccccccccCCCcccCCCCcccHHHHhcc
Q 029884 151 DRNDECGICMENCTKMVLPNCGHSLCVNCFHDW 183 (186)
Q Consensus 151 ~~e~eC~IClE~~~~~Vl~~CGH~FC~~Cl~~W 183 (186)
..=.-|..|+.++.+||.++=||.||.+||-++
T Consensus 41 K~FdcCsLtLqPc~dPvit~~GylfdrEaILe~ 73 (303)
T KOG3039|consen 41 KPFDCCSLTLQPCRDPVITPDGYLFDREAILEY 73 (303)
T ss_pred CCcceeeeecccccCCccCCCCeeeeHHHHHHH
Confidence 344589999999999999999999999999875
No 52
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=82.19 E-value=0.33 Score=44.27 Aligned_cols=28 Identities=36% Similarity=0.853 Sum_probs=23.5
Q ss_pred cccccccccccCCCcccCCCCc-ccHHHH
Q 029884 153 NDECGICMENCTKMVLPNCGHS-LCVNCF 180 (186)
Q Consensus 153 e~eC~IClE~~~~~Vl~~CGH~-FC~~Cl 180 (186)
+..|.|||+...+=|+..|||. -|.+|=
T Consensus 300 ~~LC~ICmDaP~DCvfLeCGHmVtCt~CG 328 (350)
T KOG4275|consen 300 RRLCAICMDAPRDCVFLECGHMVTCTKCG 328 (350)
T ss_pred HHHHHHHhcCCcceEEeecCcEEeehhhc
Confidence 6799999999999999999995 365553
No 53
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=81.63 E-value=0.66 Score=42.71 Aligned_cols=30 Identities=23% Similarity=0.641 Sum_probs=25.1
Q ss_pred cccccccccccCCCccc-CCCCcccHHHHhc
Q 029884 153 NDECGICMENCTKMVLP-NCGHSLCVNCFHD 182 (186)
Q Consensus 153 e~eC~IClE~~~~~Vl~-~CGH~FC~~Cl~~ 182 (186)
...|+.|.-+...++-+ -|||.||.+||..
T Consensus 274 ~LkCplc~~Llrnp~kT~cC~~~fc~eci~~ 304 (427)
T COG5222 274 SLKCPLCHCLLRNPMKTPCCGHTFCDECIGT 304 (427)
T ss_pred cccCcchhhhhhCcccCccccchHHHHHHhh
Confidence 37899999987777754 6899999999973
No 54
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=81.57 E-value=0.56 Score=31.23 Aligned_cols=31 Identities=19% Similarity=0.638 Sum_probs=23.5
Q ss_pred ccccccc--ccCCCcccCCC-----CcccHHHHhcccC
Q 029884 155 ECGICME--NCTKMVLPNCG-----HSLCVNCFHDWYP 185 (186)
Q Consensus 155 eC~IClE--~~~~~Vl~~CG-----H~FC~~Cl~~W~~ 185 (186)
.|-||++ ....+...+|. |.+-.+|+.+|..
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~ 38 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWIN 38 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHH
Confidence 3889997 33445566785 8999999999973
No 55
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=80.80 E-value=0.79 Score=42.27 Aligned_cols=33 Identities=21% Similarity=0.633 Sum_probs=26.8
Q ss_pred Ccccccccccc-cCCCcccCCCCcccHHHHhccc
Q 029884 152 RNDECGICMEN-CTKMVLPNCGHSLCVNCFHDWY 184 (186)
Q Consensus 152 ~e~eC~IClE~-~~~~Vl~~CGH~FC~~Cl~~W~ 184 (186)
....|++|+.. -++.|+.--|-+||+.|+-.+.
T Consensus 299 ~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv 332 (357)
T KOG0826|consen 299 DREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYV 332 (357)
T ss_pred ccccChhHHhccCCCceEEecceEEeHHHHHHHH
Confidence 56799999965 5667777789999999997753
No 56
>PF01485 IBR: IBR domain; InterPro: IPR002867 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a cysteine-rich (C6HC) zinc finger domain that is present in Triad1, and which is conserved in other proteins encoded by various eukaryotes. The C6HC consensus pattern is: C-x(4)-C-x(14-30)-C-x(1-4)-C-x(4)-C-x(2)-C-x(4)-H-x(4)-C The C6HC zinc finger motif is the fourth family member of the zinc-binding RING, LIM, and LAP/PHD fingers. Strikingly, in most of the proteins the C6HC domain is flanked by two RING finger structures IPR001841 from INTERPRO. The novel C6HC motif has been called DRIL (double RING finger linked). The strong conservation of the larger tripartite TRIAD (twoRING fingers and DRIL) structure indicates that the three subdomains are functionally linked and identifies a novel class of proteins []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CT7_A 1WD2_A 2JMO_A 1WIM_A.
Probab=80.55 E-value=0.46 Score=31.48 Aligned_cols=18 Identities=33% Similarity=1.052 Sum_probs=15.4
Q ss_pred ccCCCCcccHHHHhcccC
Q 029884 168 LPNCGHSLCVNCFHDWYP 185 (186)
Q Consensus 168 l~~CGH~FC~~Cl~~W~~ 185 (186)
=+.||+.||+.|-..|..
T Consensus 43 C~~C~~~fC~~C~~~~H~ 60 (64)
T PF01485_consen 43 CPSCGTEFCFKCGEPWHE 60 (64)
T ss_dssp TTSCCSEECSSSTSESCT
T ss_pred CCCCCCcCccccCcccCC
Confidence 466999999999999864
No 57
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=79.93 E-value=0.4 Score=48.80 Aligned_cols=32 Identities=22% Similarity=0.823 Sum_probs=19.4
Q ss_pred cccccccccccCCCc---ccCCCCcccHHHHhccc
Q 029884 153 NDECGICMENCTKMV---LPNCGHSLCVNCFHDWY 184 (186)
Q Consensus 153 e~eC~IClE~~~~~V---l~~CGH~FC~~Cl~~W~ 184 (186)
...|+||+-.+.+.. -..|+|.||..|+..|.
T Consensus 123 ~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWs 157 (1134)
T KOG0825|consen 123 ENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWS 157 (1134)
T ss_pred hhhhhHHHHHHHHHhhccccccccccHHHHhhhhh
Confidence 456777765444321 23477777777777774
No 58
>PF04641 Rtf2: Rtf2 RING-finger
Probab=79.43 E-value=1.4 Score=38.37 Aligned_cols=34 Identities=12% Similarity=0.245 Sum_probs=26.5
Q ss_pred CCCcccccccccccC----CCcccCCCCcccHHHHhcc
Q 029884 150 LDRNDECGICMENCT----KMVLPNCGHSLCVNCFHDW 183 (186)
Q Consensus 150 ~~~e~eC~IClE~~~----~~Vl~~CGH~FC~~Cl~~W 183 (186)
....+.|||....++ .+.+-+|||+|+..++.+-
T Consensus 110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~ 147 (260)
T PF04641_consen 110 SEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKEL 147 (260)
T ss_pred CCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhh
Confidence 356789999986544 2457789999999999864
No 59
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=76.72 E-value=1.2 Score=40.14 Aligned_cols=29 Identities=24% Similarity=0.675 Sum_probs=24.6
Q ss_pred CcccccccccccCCCcccCC--CCcccHHHHh
Q 029884 152 RNDECGICMENCTKMVLPNC--GHSLCVNCFH 181 (186)
Q Consensus 152 ~e~eC~IClE~~~~~Vl~~C--GH~FC~~Cl~ 181 (186)
+=.+||||.+....|+ -+| ||.-|.+|-.
T Consensus 47 ~lleCPvC~~~l~~Pi-~QC~nGHlaCssC~~ 77 (299)
T KOG3002|consen 47 DLLDCPVCFNPLSPPI-FQCDNGHLACSSCRT 77 (299)
T ss_pred hhccCchhhccCcccc-eecCCCcEehhhhhh
Confidence 3469999999999996 458 9999999974
No 60
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=75.55 E-value=1.8 Score=25.58 Aligned_cols=21 Identities=24% Similarity=0.637 Sum_probs=14.6
Q ss_pred cccccccccC--CCcccCCCCcc
Q 029884 155 ECGICMENCT--KMVLPNCGHSL 175 (186)
Q Consensus 155 eC~IClE~~~--~~Vl~~CGH~F 175 (186)
.||-|-.... ...-|.|||.|
T Consensus 2 ~CP~C~~~V~~~~~~Cp~CG~~F 24 (26)
T PF10571_consen 2 TCPECGAEVPESAKFCPHCGYDF 24 (26)
T ss_pred cCCCCcCCchhhcCcCCCCCCCC
Confidence 5888875432 34468899998
No 61
>PF13798 PCYCGC: Protein of unknown function with PCYCGC motif
Probab=75.29 E-value=0.49 Score=39.29 Aligned_cols=83 Identities=16% Similarity=0.189 Sum_probs=65.5
Q ss_pred HHHHHhhHHHHHhhhhCCCCCCCceEEEeeccCCchhHHHHHHHHhhcCCCCC-ccccccceeEEEEEEeeCCCccccch
Q 029884 16 KALEADIQHANTLAAALPRDYGGDFVQMRLSYSPFAPLVLFMIEWMDYSCTDT-VPSYLGLLNILVYKVYVDGMPALSSK 94 (186)
Q Consensus 16 k~leadiq~an~la~~~pr~~~g~~~qm~l~y~~~a~~~lfl~qw~d~~~~~~-l~~~lgl~~iliykvy~DGk~~~s~~ 94 (186)
+...+|||.+-.-+..+|--....-=+|+..|.-++. --=+++|+.|-|++- =+|.=..++=.|.++-.||..+|..|
T Consensus 32 ~~~~gDi~E~Tas~~~lP~fl~~~~~~i~~~Y~~A~~-~~~~L~~iPCYCGCges~gH~Sn~~Cfi~e~~~dG~Vvwd~H 110 (158)
T PF13798_consen 32 HHANGDIQETTASADVLPSFLDSASPEIQEAYQMAAK-HPELLEYIPCYCGCGESAGHKSNLDCFIDEIKEDGSVVWDDH 110 (158)
T ss_pred hccchhHHHHhcCcccccHHHHcCCHHHHHHHHHHHH-hHHHHHcCCcccCCCCCCCCccccccceeeccCCCceeeccc
Confidence 4567788888877888887777777788888876554 345789999988854 37777788899999999999999998
Q ss_pred hhhhH
Q 029884 95 ERKAT 99 (186)
Q Consensus 95 ~Rkat 99 (186)
+-+=-
T Consensus 111 g~~C~ 115 (158)
T PF13798_consen 111 GTRCG 115 (158)
T ss_pred ccccH
Confidence 86543
No 62
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=75.29 E-value=0.98 Score=41.77 Aligned_cols=33 Identities=33% Similarity=0.732 Sum_probs=24.2
Q ss_pred Cccccccccccc------CCCcccCCCCcccHHHHhcccC
Q 029884 152 RNDECGICMENC------TKMVLPNCGHSLCVNCFHDWYP 185 (186)
Q Consensus 152 ~e~eC~IClE~~------~~~Vl~~CGH~FC~~Cl~~W~~ 185 (186)
.-..|++|.-.. ....-. |||-||+.|..+|..
T Consensus 305 ~wr~CpkC~~~ie~~~GCnhm~Cr-C~~~fcy~C~~~~~~ 343 (384)
T KOG1812|consen 305 RWRQCPKCKFMIELSEGCNHMTCR-CGHQFCYMCGGDWKT 343 (384)
T ss_pred hcCcCcccceeeeecCCcceEEee-ccccchhhcCcchhh
Confidence 456899997442 234445 999999999999864
No 63
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=74.30 E-value=1.2 Score=32.37 Aligned_cols=12 Identities=42% Similarity=1.403 Sum_probs=8.5
Q ss_pred cccHHHHhcccC
Q 029884 174 SLCVNCFHDWYP 185 (186)
Q Consensus 174 ~FC~~Cl~~W~~ 185 (186)
.||++|+.+|+.
T Consensus 11 gFCRNCLskWy~ 22 (68)
T PF06844_consen 11 GFCRNCLSKWYR 22 (68)
T ss_dssp S--HHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 499999999973
No 64
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=73.95 E-value=1.4 Score=30.80 Aligned_cols=32 Identities=34% Similarity=0.633 Sum_probs=24.9
Q ss_pred CcccccccccccCCCcccCCCCcccHHHHhcc
Q 029884 152 RNDECGICMENCTKMVLPNCGHSLCVNCFHDW 183 (186)
Q Consensus 152 ~e~eC~IClE~~~~~Vl~~CGH~FC~~Cl~~W 183 (186)
.+..|-.|....++.++.+|||..|..|.--+
T Consensus 6 ~~~~~~~~~~~~~~~~~~pCgH~I~~~~f~~~ 37 (55)
T PF14447_consen 6 PEQPCVFCGFVGTKGTVLPCGHLICDNCFPGE 37 (55)
T ss_pred cceeEEEccccccccccccccceeeccccChh
Confidence 35577788888777777889999999997643
No 65
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.47 E-value=2.5 Score=34.95 Aligned_cols=32 Identities=28% Similarity=0.798 Sum_probs=20.3
Q ss_pred cCCCCcccccccccccCCCcccCCCCcccHHHHhcc
Q 029884 148 KDLDRNDECGICMENCTKMVLPNCGHSLCVNCFHDW 183 (186)
Q Consensus 148 ~d~~~e~eC~IClE~~~~~Vl~~CGH~FC~~Cl~~W 183 (186)
+..+.+..|+||+...- .-.|||. |..|-..+
T Consensus 60 aGv~ddatC~IC~KTKF---ADG~GH~-C~YCq~r~ 91 (169)
T KOG3799|consen 60 AGVGDDATCGICHKTKF---ADGCGHN-CSYCQTRF 91 (169)
T ss_pred cccCcCcchhhhhhccc---ccccCcc-cchhhhhH
Confidence 44567889999986532 2348885 55554443
No 66
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=71.22 E-value=1.9 Score=40.48 Aligned_cols=32 Identities=31% Similarity=0.686 Sum_probs=26.7
Q ss_pred CCcccccccccccCCCcccCCCCcccHHHHhc
Q 029884 151 DRNDECGICMENCTKMVLPNCGHSLCVNCFHD 182 (186)
Q Consensus 151 ~~e~eC~IClE~~~~~Vl~~CGH~FC~~Cl~~ 182 (186)
+++..|-||-+-.+-..+++|||-+|.-|--.
T Consensus 59 Een~~C~ICA~~~TYs~~~PC~H~~CH~Ca~R 90 (493)
T COG5236 59 EENMNCQICAGSTTYSARYPCGHQICHACAVR 90 (493)
T ss_pred cccceeEEecCCceEEEeccCCchHHHHHHHH
Confidence 45679999999888777788999999999643
No 67
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=71.10 E-value=2.1 Score=45.60 Aligned_cols=34 Identities=26% Similarity=0.662 Sum_probs=27.9
Q ss_pred CcccccccccccC-CCcccCCCCcccHHHHhcccC
Q 029884 152 RNDECGICMENCT-KMVLPNCGHSLCVNCFHDWYP 185 (186)
Q Consensus 152 ~e~eC~IClE~~~-~~Vl~~CGH~FC~~Cl~~W~~ 185 (186)
+...|.||.+... ......|||.+|..|..-|..
T Consensus 1152 ~~~~c~ic~dil~~~~~I~~cgh~~c~~c~~~~l~ 1186 (1394)
T KOG0298|consen 1152 GHFVCEICLDILRNQGGIAGCGHEPCCRCDELWLY 1186 (1394)
T ss_pred cccchHHHHHHHHhcCCeeeechhHhhhHHHHHHH
Confidence 5669999999855 555677999999999998853
No 68
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=70.89 E-value=2 Score=39.78 Aligned_cols=32 Identities=31% Similarity=0.791 Sum_probs=26.5
Q ss_pred CCcccccccccccCCCcccCCCCc-ccHHHHhc
Q 029884 151 DRNDECGICMENCTKMVLPNCGHS-LCVNCFHD 182 (186)
Q Consensus 151 ~~e~eC~IClE~~~~~Vl~~CGH~-FC~~Cl~~ 182 (186)
++..+|=|||.-..+.++.+|-|. .|..|-..
T Consensus 288 ~~gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~ 320 (349)
T KOG4265|consen 288 ESGKECVICLSESRDTVVLPCRHLCLCSGCAKS 320 (349)
T ss_pred cCCCeeEEEecCCcceEEecchhhehhHhHHHH
Confidence 445799999988888888889996 89998764
No 69
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=67.29 E-value=1 Score=33.76 Aligned_cols=32 Identities=28% Similarity=0.796 Sum_probs=23.4
Q ss_pred cccccccccccC-------------CCcccCCCCcccHHHHhccc
Q 029884 153 NDECGICMENCT-------------KMVLPNCGHSLCVNCFHDWY 184 (186)
Q Consensus 153 e~eC~IClE~~~-------------~~Vl~~CGH~FC~~Cl~~W~ 184 (186)
++.||||.-.+. +-|.-.|.|.|-.-||.+|.
T Consensus 20 ~e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl 64 (84)
T KOG1493|consen 20 DETCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWL 64 (84)
T ss_pred CCccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHh
Confidence 448888864433 23456699999999999996
No 70
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=65.44 E-value=2.1 Score=32.28 Aligned_cols=19 Identities=26% Similarity=0.709 Sum_probs=16.0
Q ss_pred cccCCCCcccHHHHhcccC
Q 029884 167 VLPNCGHSLCVNCFHDWYP 185 (186)
Q Consensus 167 Vl~~CGH~FC~~Cl~~W~~ 185 (186)
+--.|.|.|-.-||.+|..
T Consensus 50 ~wG~CnHaFH~HCI~rWL~ 68 (88)
T COG5194 50 VWGVCNHAFHDHCIYRWLD 68 (88)
T ss_pred EEEecchHHHHHHHHHHHh
Confidence 3456999999999999964
No 71
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=65.27 E-value=2.9 Score=39.01 Aligned_cols=34 Identities=26% Similarity=0.604 Sum_probs=23.2
Q ss_pred CCcccccccccccCC------Ccc--cCCCCcccHHHHhccc
Q 029884 151 DRNDECGICMENCTK------MVL--PNCGHSLCVNCFHDWY 184 (186)
Q Consensus 151 ~~e~eC~IClE~~~~------~Vl--~~CGH~FC~~Cl~~W~ 184 (186)
.+..+||.|.-+..+ ... .+|.|.|||.|+..|.
T Consensus 224 ~ntk~CP~c~~~iek~~gc~~~~~~~~~c~~~FCw~Cl~~~~ 265 (444)
T KOG1815|consen 224 ANTKECPKCKVPIEKDGGCNHMTCKSASCKHEFCWVCLASLS 265 (444)
T ss_pred ccCccCCCcccchhccCCccccccccCCcCCeeceeeecccc
Confidence 345569999854221 222 2499999999987774
No 72
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=65.23 E-value=2.3 Score=29.19 Aligned_cols=33 Identities=24% Similarity=0.630 Sum_probs=17.2
Q ss_pred CCcccccccccccCCC----cccCCCCcccHHHHhcc
Q 029884 151 DRNDECGICMENCTKM----VLPNCGHSLCVNCFHDW 183 (186)
Q Consensus 151 ~~e~eC~IClE~~~~~----Vl~~CGH~FC~~Cl~~W 183 (186)
.+...|.+|...+.-. ---.||+.||.+|....
T Consensus 7 ~~~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~~ 43 (69)
T PF01363_consen 7 SEASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQR 43 (69)
T ss_dssp GG-SB-TTT--B-BSSS-EEE-TTT--EEECCCS-EE
T ss_pred CCCCcCcCcCCcCCCceeeEccCCCCCEECCchhCCE
Confidence 4567899999776432 24569999999998653
No 73
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=64.58 E-value=3.3 Score=39.29 Aligned_cols=31 Identities=29% Similarity=0.719 Sum_probs=24.5
Q ss_pred CCcccccccccc------cCCCcccCCCCcccHHHHh
Q 029884 151 DRNDECGICMEN------CTKMVLPNCGHSLCVNCFH 181 (186)
Q Consensus 151 ~~e~eC~IClE~------~~~~Vl~~CGH~FC~~Cl~ 181 (186)
.+...||-|.-. .++++-+.|||.|||-|-.
T Consensus 366 ~N~krCP~C~v~IEr~eGCnKM~C~~c~~~fc~~c~~ 402 (445)
T KOG1814|consen 366 SNSKRCPKCKVVIERSEGCNKMHCTKCGTYFCWICAE 402 (445)
T ss_pred hcCCCCCcccceeecCCCccceeeccccccceeehhh
Confidence 356789999743 5578889999999999954
No 74
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=61.77 E-value=3.4 Score=37.54 Aligned_cols=34 Identities=18% Similarity=0.551 Sum_probs=24.7
Q ss_pred CCcccccccccccC----------CCcccCCCCcccHHHHhccc
Q 029884 151 DRNDECGICMENCT----------KMVLPNCGHSLCVNCFHDWY 184 (186)
Q Consensus 151 ~~e~eC~IClE~~~----------~~Vl~~CGH~FC~~Cl~~W~ 184 (186)
.++..|.||-.-.. +.-...|+|+|--.||+.|.
T Consensus 222 l~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWc 265 (328)
T KOG1734|consen 222 LSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWC 265 (328)
T ss_pred CCcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhhe
Confidence 35678999964321 22246699999999999995
No 76
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=61.72 E-value=4.9 Score=30.92 Aligned_cols=37 Identities=22% Similarity=0.469 Sum_probs=24.3
Q ss_pred CCccCCCCccccccccccc-----CCCcccCCCCcccHHHHh
Q 029884 145 LSDKDLDRNDECGICMENC-----TKMVLPNCGHSLCVNCFH 181 (186)
Q Consensus 145 l~~~d~~~e~eC~IClE~~-----~~~Vl~~CGH~FC~~Cl~ 181 (186)
.+......+..|.+|...+ ...+-..|+|.+|.+|-.
T Consensus 46 ~~~~~~~~~~~C~~C~~~fg~l~~~~~~C~~C~~~VC~~C~~ 87 (118)
T PF02318_consen 46 LGNSQKYGERHCARCGKPFGFLFNRGRVCVDCKHRVCKKCGV 87 (118)
T ss_dssp CSCSTTHCCSB-TTTS-BCSCTSTTCEEETTTTEEEETTSEE
T ss_pred cccccccCCcchhhhCCcccccCCCCCcCCcCCccccCccCC
Confidence 3443334678999998753 245568899999999853
No 77
>COG3492 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=58.59 E-value=2.9 Score=32.32 Aligned_cols=12 Identities=42% Similarity=1.450 Sum_probs=10.5
Q ss_pred cccHHHHhcccC
Q 029884 174 SLCVNCFHDWYP 185 (186)
Q Consensus 174 ~FC~~Cl~~W~~ 185 (186)
.||++|+.+|+.
T Consensus 42 gFCRNCLs~Wy~ 53 (104)
T COG3492 42 GFCRNCLSNWYR 53 (104)
T ss_pred HHHHHHHHHHHH
Confidence 599999999974
No 78
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=58.59 E-value=4.6 Score=41.51 Aligned_cols=34 Identities=15% Similarity=0.376 Sum_probs=22.6
Q ss_pred CcccccccccccCC-------CcccCCCCcccHHHHhcccC
Q 029884 152 RNDECGICMENCTK-------MVLPNCGHSLCVNCFHDWYP 185 (186)
Q Consensus 152 ~e~eC~IClE~~~~-------~Vl~~CGH~FC~~Cl~~W~~ 185 (186)
....|.||.--..+ -.+.+|+|.||..||..|+.
T Consensus 95 ~s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~D 135 (1134)
T KOG0825|consen 95 ESDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCND 135 (1134)
T ss_pred cccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHH
Confidence 44566666532222 12457999999999999964
No 79
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=58.34 E-value=7.8 Score=26.21 Aligned_cols=28 Identities=36% Similarity=0.899 Sum_probs=13.3
Q ss_pred cccccccc--CCCcc--cCCCCcccHHHHhcc
Q 029884 156 CGICMENC--TKMVL--PNCGHSLCVNCFHDW 183 (186)
Q Consensus 156 C~IClE~~--~~~Vl--~~CGH~FC~~Cl~~W 183 (186)
|++|.|.. ++.-+ =.||+..|..|+.+-
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i 32 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDI 32 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHH
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHH
Confidence 78998764 22222 348999999998763
No 80
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=56.91 E-value=7.9 Score=25.32 Aligned_cols=30 Identities=27% Similarity=0.604 Sum_probs=21.0
Q ss_pred ccccccccccC----CCcccCCCCcccHHHHhcc
Q 029884 154 DECGICMENCT----KMVLPNCGHSLCVNCFHDW 183 (186)
Q Consensus 154 ~eC~IClE~~~----~~Vl~~CGH~FC~~Cl~~W 183 (186)
..|.+|...+. ..--..||+.||.+|....
T Consensus 3 ~~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~~ 36 (57)
T cd00065 3 SSCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNR 36 (57)
T ss_pred CcCcccCccccCCccccccCcCcCCcChHHcCCe
Confidence 46888865433 2335679999999998754
No 81
>TIGR03738 PRTRC_C PRTRC system protein C. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein C.
Probab=56.66 E-value=12 Score=26.98 Aligned_cols=36 Identities=33% Similarity=0.634 Sum_probs=27.3
Q ss_pred ccceeEEEEEE--eeCCCccccchhhhhHHHHHhhhhcchHH
Q 029884 73 LGLLNILVYKV--YVDGMPALSSKERKATLREFYAIIYPSLR 112 (186)
Q Consensus 73 lgl~~iliykv--y~DGk~~~s~~~Rkati~efYa~I~psLq 112 (186)
-+|-|+.+|+- ..|=.+.||.- .+++||+..+|-|.
T Consensus 3 ~~l~RvF~~~gi~L~DP~p~~spe----~V~dfYs~~YPeLt 40 (66)
T TIGR03738 3 TTLSRVFTYNGVRLADPSPAMSPE----QVRDFYSAQYPELL 40 (66)
T ss_pred eeEEEEEEECCeEcCCCCCCCCHH----HHHHHHhccCchhe
Confidence 46788999973 34666677743 49999999999976
No 82
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=52.07 E-value=6.7 Score=33.87 Aligned_cols=33 Identities=27% Similarity=0.674 Sum_probs=24.2
Q ss_pred cccccccccccC-----CCc--ccCCCCcccHHHHhcccC
Q 029884 153 NDECGICMENCT-----KMV--LPNCGHSLCVNCFHDWYP 185 (186)
Q Consensus 153 e~eC~IClE~~~-----~~V--l~~CGH~FC~~Cl~~W~~ 185 (186)
...||||....- +.+ -.+||..|-.-|+.+|.+
T Consensus 165 ~~~cgicyayqldGTipDqtCdN~qCgkpFHqiCL~dWLR 204 (234)
T KOG3268|consen 165 LGACGICYAYQLDGTIPDQTCDNIQCGKPFHQICLTDWLR 204 (234)
T ss_pred hhcccceeeeecCCccccccccccccCCcHHHHHHHHHHH
Confidence 347999975432 333 246999999999999974
No 83
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=51.72 E-value=6.3 Score=40.54 Aligned_cols=35 Identities=34% Similarity=0.735 Sum_probs=27.5
Q ss_pred CCcccccccccccC--CCc--ccCCCCcccHHHHhcccC
Q 029884 151 DRNDECGICMENCT--KMV--LPNCGHSLCVNCFHDWYP 185 (186)
Q Consensus 151 ~~e~eC~IClE~~~--~~V--l~~CGH~FC~~Cl~~W~~ 185 (186)
.+..+|-||.|... .+| -.+|=|+|-..||++|-+
T Consensus 189 ~~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WAr 227 (950)
T KOG1952|consen 189 NRKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWAR 227 (950)
T ss_pred cCceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHH
Confidence 46789999998643 444 356999999999999953
No 84
>COG4647 AcxC Acetone carboxylase, gamma subunit [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=49.92 E-value=6.1 Score=32.49 Aligned_cols=22 Identities=27% Similarity=0.484 Sum_probs=17.3
Q ss_pred cccccccCCCcccCCCCcccHH
Q 029884 157 GICMENCTKMVLPNCGHSLCVN 178 (186)
Q Consensus 157 ~IClE~~~~~Vl~~CGH~FC~~ 178 (186)
-||......++--.|||+||-.
T Consensus 61 fi~qs~~~rv~rcecghsf~d~ 82 (165)
T COG4647 61 FICQSAQKRVIRCECGHSFGDY 82 (165)
T ss_pred EEEecccccEEEEeccccccCh
Confidence 5788777777667899999953
No 85
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=48.89 E-value=7.4 Score=36.19 Aligned_cols=25 Identities=32% Similarity=0.852 Sum_probs=21.5
Q ss_pred CcccccccccccCCCcccCCCCccc
Q 029884 152 RNDECGICMENCTKMVLPNCGHSLC 176 (186)
Q Consensus 152 ~e~eC~IClE~~~~~Vl~~CGH~FC 176 (186)
-...|-||.+.+...+..+|||.=|
T Consensus 304 ~p~lcVVcl~e~~~~~fvpcGh~cc 328 (355)
T KOG1571|consen 304 QPDLCVVCLDEPKSAVFVPCGHVCC 328 (355)
T ss_pred CCCceEEecCCccceeeecCCcEEE
Confidence 3468999999988888888999966
No 86
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.55 E-value=9.6 Score=39.25 Aligned_cols=28 Identities=29% Similarity=0.617 Sum_probs=22.4
Q ss_pred ccccccccc-cCCCcccCCCCcccHHHHh
Q 029884 154 DECGICMEN-CTKMVLPNCGHSLCVNCFH 181 (186)
Q Consensus 154 ~eC~IClE~-~~~~Vl~~CGH~FC~~Cl~ 181 (186)
..|.+|--. --+.|--.|||+|-..|+.
T Consensus 841 skCs~C~~~LdlP~VhF~CgHsyHqhC~e 869 (933)
T KOG2114|consen 841 SKCSACEGTLDLPFVHFLCGHSYHQHCLE 869 (933)
T ss_pred eeecccCCccccceeeeecccHHHHHhhc
Confidence 489999744 4456667899999999987
No 87
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=46.52 E-value=4.7 Score=42.35 Aligned_cols=35 Identities=20% Similarity=0.675 Sum_probs=25.7
Q ss_pred CCcccccccccccC-------CCcccCCCCcccHHHHhcccC
Q 029884 151 DRNDECGICMENCT-------KMVLPNCGHSLCVNCFHDWYP 185 (186)
Q Consensus 151 ~~e~eC~IClE~~~-------~~Vl~~CGH~FC~~Cl~~W~~ 185 (186)
..-+||+||..+.. ..--+.|.|.|-..|+..|.+
T Consensus 1467 sG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~ 1508 (1525)
T COG5219 1467 SGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFA 1508 (1525)
T ss_pred CCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHH
Confidence 35679999985422 122466999999999999964
No 88
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=45.57 E-value=8.2 Score=35.81 Aligned_cols=36 Identities=22% Similarity=0.466 Sum_probs=22.3
Q ss_pred CccCCCC-cccccccccccC-CCcccCCCCcccHHHHh
Q 029884 146 SDKDLDR-NDECGICMENCT-KMVLPNCGHSLCVNCFH 181 (186)
Q Consensus 146 ~~~d~~~-e~eC~IClE~~~-~~Vl~~CGH~FC~~Cl~ 181 (186)
.+.++.. -.-|.-|--... -.-+..|.|+||.+|-+
T Consensus 82 gek~l~p~VHfCd~Cd~PI~IYGRmIPCkHvFCl~CAr 119 (389)
T KOG2932|consen 82 GEKQLGPRVHFCDRCDFPIAIYGRMIPCKHVFCLECAR 119 (389)
T ss_pred cccccCcceEeecccCCcceeeecccccchhhhhhhhh
Confidence 3444433 457888854322 12245699999999975
No 89
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=45.10 E-value=5.6 Score=36.45 Aligned_cols=33 Identities=21% Similarity=0.553 Sum_probs=25.2
Q ss_pred CcccccccccccCCCcccCC----CCcccHHHHhccc
Q 029884 152 RNDECGICMENCTKMVLPNC----GHSLCVNCFHDWY 184 (186)
Q Consensus 152 ~e~eC~IClE~~~~~Vl~~C----GH~FC~~Cl~~W~ 184 (186)
...-|.+|.|-.++.-..+| .|.||..|-++..
T Consensus 267 apLcCTLC~ERLEDTHFVQCPSVp~HKFCFPCSResI 303 (352)
T KOG3579|consen 267 APLCCTLCHERLEDTHFVQCPSVPSHKFCFPCSRESI 303 (352)
T ss_pred CceeehhhhhhhccCceeecCCCcccceecccCHHHH
Confidence 34789999998776555555 8999999977643
No 90
>PF11809 DUF3330: Domain of unknown function (DUF3330); InterPro: IPR021767 This family of proteins are functionally uncharacterised. This family is only found in bacteria.
Probab=42.65 E-value=6 Score=28.83 Aligned_cols=35 Identities=20% Similarity=0.695 Sum_probs=23.8
Q ss_pred Ccccccccc-cccCCCcccCCC----Cccc-HHHHhcccCC
Q 029884 152 RNDECGICM-ENCTKMVLPNCG----HSLC-VNCFHDWYPR 186 (186)
Q Consensus 152 ~e~eC~ICl-E~~~~~Vl~~CG----H~FC-~~Cl~~W~~r 186 (186)
....|.+|+ |+..+...+.-| +-|| .+|+..|..|
T Consensus 10 ~~~sC~vC~KEIPl~~a~t~E~~eYV~hFCGLeCY~~w~a~ 50 (70)
T PF11809_consen 10 KTTSCCVCCKEIPLDAAFTPEAAEYVEHFCGLECYQRWQAR 50 (70)
T ss_pred ccchHHHHhhhCChhhccCcchHHHHHHHhhHHHHHHHHHH
Confidence 346899998 666655555544 3466 5899999754
No 91
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=41.87 E-value=14 Score=25.29 Aligned_cols=12 Identities=33% Similarity=1.348 Sum_probs=7.2
Q ss_pred ccCCCCcccHHH
Q 029884 168 LPNCGHSLCVNC 179 (186)
Q Consensus 168 l~~CGH~FC~~C 179 (186)
-+.|++.||..|
T Consensus 24 C~~C~~~FC~dC 35 (51)
T PF07975_consen 24 CPKCKNHFCIDC 35 (51)
T ss_dssp -TTTT--B-HHH
T ss_pred CCCCCCccccCc
Confidence 478999999998
No 92
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=41.57 E-value=22 Score=37.80 Aligned_cols=35 Identities=34% Similarity=0.451 Sum_probs=25.6
Q ss_pred chHHHHHHHHHhhHHHHHh-------hhhCCCCCCCceEEEeecc
Q 029884 10 SYRESLKALEADIQHANTL-------AAALPRDYGGDFVQMRLSY 47 (186)
Q Consensus 10 ~~~~slk~leadiq~an~l-------a~~~pr~~~g~~~qm~l~y 47 (186)
-|+.||+.|-+||-|||+| |.+.-.- .-||..|--
T Consensus 653 mf~~SL~rLr~~iv~AN~LVrEAN~laeEm~Kk---T~y~VTLQI 694 (1714)
T KOG0241|consen 653 MFRQSLARLREQIVKANTLVREANFLAEEMSKK---TDYQVTLQI 694 (1714)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---cceeEEEEc
Confidence 6999999999999999998 4444433 445555543
No 93
>smart00290 ZnF_UBP Ubiquitin Carboxyl-terminal Hydrolase-like zinc finger.
Probab=40.53 E-value=15 Score=23.45 Aligned_cols=24 Identities=21% Similarity=0.498 Sum_probs=17.0
Q ss_pred cccccccccCCCcccCCCCcccHH
Q 029884 155 ECGICMENCTKMVLPNCGHSLCVN 178 (186)
Q Consensus 155 eC~IClE~~~~~Vl~~CGH~FC~~ 178 (186)
.|..|.....-.+-+.|||++|..
T Consensus 1 ~C~~C~~~~~l~~CL~C~~~~c~~ 24 (50)
T smart00290 1 RCSVCGTIENLWLCLTCGQVGCGR 24 (50)
T ss_pred CcccCCCcCCeEEecCCCCcccCC
Confidence 377787655555667799999954
No 94
>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription]
Probab=38.81 E-value=11 Score=38.70 Aligned_cols=33 Identities=27% Similarity=0.966 Sum_probs=26.7
Q ss_pred Ccccccccccc-c-CCCcccCCCCcccHHHHhccc
Q 029884 152 RNDECGICMEN-C-TKMVLPNCGHSLCVNCFHDWY 184 (186)
Q Consensus 152 ~e~eC~IClE~-~-~~~Vl~~CGH~FC~~Cl~~W~ 184 (186)
....|..|... + ..-+-+.|||.+|..|++.|.
T Consensus 228 ~~~mC~~C~~tlfn~hw~C~~C~~~~Cl~C~r~~~ 262 (889)
T KOG1356|consen 228 IREMCDRCETTLFNIHWRCPRCGFGVCLDCYRKWY 262 (889)
T ss_pred cchhhhhhcccccceeEEccccCCeeeecchhhcc
Confidence 34689999743 3 467789999999999999995
No 95
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=35.22 E-value=13 Score=29.43 Aligned_cols=18 Identities=22% Similarity=0.779 Sum_probs=15.5
Q ss_pred ccCCCCcccHHHHhcccC
Q 029884 168 LPNCGHSLCVNCFHDWYP 185 (186)
Q Consensus 168 l~~CGH~FC~~Cl~~W~~ 185 (186)
=-.|.|+|-.-||.+|.+
T Consensus 78 WG~CNHaFH~hCisrWlk 95 (114)
T KOG2930|consen 78 WGVCNHAFHFHCISRWLK 95 (114)
T ss_pred eeecchHHHHHHHHHHHh
Confidence 356999999999999964
No 96
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=34.04 E-value=25 Score=31.69 Aligned_cols=38 Identities=24% Similarity=0.461 Sum_probs=30.2
Q ss_pred cCCCCccccccccc-----ccCCCcccCCCCcccHHHHhcccC
Q 029884 148 KDLDRNDECGICME-----NCTKMVLPNCGHSLCVNCFHDWYP 185 (186)
Q Consensus 148 ~d~~~e~eC~IClE-----~~~~~Vl~~CGH~FC~~Cl~~W~~ 185 (186)
.+...++.++++.. -....++..|||.||+.|...|..
T Consensus 90 S~~~~~~~ls~~~s~e~~~~~e~~~~y~~~~~f~i~~~~i~~~ 132 (271)
T COG5574 90 SRFNREETLSIEYSRETNIDKEGEVLYPCGIFFCIGCDYIWSI 132 (271)
T ss_pred cccccccccccccCcccccccccceeeecccccchhhhHHHHH
Confidence 44567889999986 355678888999999999988853
No 97
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=33.90 E-value=19 Score=29.49 Aligned_cols=31 Identities=39% Similarity=0.921 Sum_probs=22.8
Q ss_pred CcccccccccccCCCc--ccC--CCCcccHHHHhc
Q 029884 152 RNDECGICMENCTKMV--LPN--CGHSLCVNCFHD 182 (186)
Q Consensus 152 ~e~eC~IClE~~~~~V--l~~--CGH~FC~~Cl~~ 182 (186)
.-.+|+||.|...+.- -|+ ||-+.|--|+..
T Consensus 79 ~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~ 113 (140)
T PF05290_consen 79 KLYECNICKETSAEERFLKPNECCGYSICNACYAN 113 (140)
T ss_pred CceeccCcccccchhhcCCcccccchHHHHHHHHH
Confidence 3469999999855422 233 899999999875
No 98
>PF08882 Acetone_carb_G: Acetone carboxylase gamma subunit; InterPro: IPR014979 Acetone carboxylase is the key enzyme of bacterial acetone metabolism, catalysing the condensation of acetone and CO2 to form acetoacetate [] according to the following reaction: CH3COCH3 + CO2 + ATP = CH3COCH2COO- + AMP + 2P(i) + H+ It has the subunit composition: (alpha(2)beta(2)gamma(2) multimers of 85kDa, 78kDa, and 20kDa subunits). It is expressed to high levels (17 to 25% of soluble protein) in cells grown with acetone as the carbon source but are not present at detectable levels in cells grown with other carbon sources []. Acetone carboxylase may enable Helicobacter pylori to survive off acetone in the stomach of humans and other mammals where it is the etiological agent of peptic ulcer disease []. This entry represents the family of gamma subunit-related acetone carboxylase proteins.
Probab=31.88 E-value=19 Score=28.49 Aligned_cols=19 Identities=37% Similarity=0.735 Sum_probs=12.6
Q ss_pred ccccccCCCcccCCCCcccH
Q 029884 158 ICMENCTKMVLPNCGHSLCV 177 (186)
Q Consensus 158 IClE~~~~~Vl~~CGH~FC~ 177 (186)
||.... +.|.-.|||.||-
T Consensus 17 i~~~~~-k~vkc~CGh~f~d 35 (112)
T PF08882_consen 17 IVQKKD-KVVKCDCGHEFCD 35 (112)
T ss_pred EEEecC-ceeeccCCCeecC
Confidence 444333 3566689999995
No 99
>PF14454 Prok_Ub: Prokaryotic Ubiquitin
Probab=29.09 E-value=65 Score=23.03 Aligned_cols=35 Identities=37% Similarity=0.656 Sum_probs=24.1
Q ss_pred cceeEEEEEE--eeCCCccccchhhhhHHHHHhhhhcchHH
Q 029884 74 GLLNILVYKV--YVDGMPALSSKERKATLREFYAIIYPSLR 112 (186)
Q Consensus 74 gl~~iliykv--y~DGk~~~s~~~Rkati~efYa~I~psLq 112 (186)
+|-|+.+|.- ..|=.+.||.- -+++||+..+|.|.
T Consensus 5 ~L~R~F~~~g~~L~DP~p~~spe----~V~~~ya~~YPeL~ 41 (65)
T PF14454_consen 5 TLTRVFRYNGITLPDPNPSLSPE----EVRDFYAAQYPELT 41 (65)
T ss_pred EEEEEEEECCEECCCCCCCCCHH----HHHHHHhhhChhhh
Confidence 5677887742 22444456633 39999999999987
No 100
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=26.14 E-value=33 Score=30.74 Aligned_cols=31 Identities=16% Similarity=0.409 Sum_probs=22.4
Q ss_pred ccccccccc--cCCCcccCCCCcccHHHHhccc
Q 029884 154 DECGICMEN--CTKMVLPNCGHSLCVNCFHDWY 184 (186)
Q Consensus 154 ~eC~IClE~--~~~~Vl~~CGH~FC~~Cl~~W~ 184 (186)
-.|..|--. .-+.+-..|-|.|-|+|+..|-
T Consensus 51 pNC~LC~t~La~gdt~RLvCyhlfHW~Clnera 83 (299)
T KOG3970|consen 51 PNCRLCNTPLASGDTTRLVCYHLFHWKCLNERA 83 (299)
T ss_pred CCCceeCCccccCcceeehhhhhHHHHHhhHHH
Confidence 456666543 2345567799999999999884
No 101
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=24.86 E-value=37 Score=19.50 Aligned_cols=8 Identities=25% Similarity=0.343 Sum_probs=4.2
Q ss_pred cccccccc
Q 029884 154 DECGICME 161 (186)
Q Consensus 154 ~eC~IClE 161 (186)
..|+-|-.
T Consensus 3 ~~Cp~Cg~ 10 (26)
T PF13248_consen 3 MFCPNCGA 10 (26)
T ss_pred CCCcccCC
Confidence 34666654
No 102
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=23.48 E-value=62 Score=25.50 Aligned_cols=13 Identities=31% Similarity=0.853 Sum_probs=10.2
Q ss_pred ccCCCCcccHHHH
Q 029884 168 LPNCGHSLCVNCF 180 (186)
Q Consensus 168 l~~CGH~FC~~Cl 180 (186)
-+.|++.||.+|=
T Consensus 84 C~~C~~~FC~dCD 96 (112)
T TIGR00622 84 CAVCKNVFCVDCD 96 (112)
T ss_pred CCCCCCccccccc
Confidence 4778899998883
No 103
>KOG2565 consensus Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=23.08 E-value=33 Score=32.83 Aligned_cols=38 Identities=24% Similarity=0.303 Sum_probs=26.5
Q ss_pred ceeEEEEEEeeCCCc---cccchhhhhHHHHHhhhhcchHHHH
Q 029884 75 LLNILVYKVYVDGMP---ALSSKERKATLREFYAIIYPSLRQL 114 (186)
Q Consensus 75 l~~iliykvy~DGk~---~~s~~~Rkati~efYa~I~psLqqL 114 (186)
++|+.++.+ .-|+. .+=-||=-+|++|||..| |.|.+-
T Consensus 138 Flhvk~p~~-k~~k~v~PlLl~HGwPGsv~EFykfI-PlLT~p 178 (469)
T KOG2565|consen 138 FLHVKPPQK-KKKKKVKPLLLLHGWPGSVREFYKFI-PLLTDP 178 (469)
T ss_pred EEEecCCcc-ccCCcccceEEecCCCchHHHHHhhh-hhhcCc
Confidence 355555533 23333 344688899999999999 998866
No 104
>PF08977 BOFC_N: Bypass of Forespore C, N terminal; InterPro: IPR015071 The N-terminal domain of, bypass of forespore C, is composed of a four-stranded beta-sheet covered by an alpha-helix. The beta-sheet has a beta2-beta1-beta4-beta3 topology, where strands beta1 and beta2 and strands beta3 and beta4 are connected by beta-turns, whereas strands beta2 and beta3 are joined by an alpha-helix that runs across one face of the beta-sheet. This domain is similar to the third immunoglobulin G-binding domain of protein G from Streptococcus, the latter belonging to a large and diverse group of cell surface-associated proteins that bind to immunoglobulins. It has been hypothesised that this domain may be a mediator of protein-protein interactions involved in proteolytic events at the cell surface []. ; PDB: 2BW2_A.
Probab=22.37 E-value=56 Score=22.48 Aligned_cols=30 Identities=23% Similarity=0.501 Sum_probs=19.1
Q ss_pred eEEEEEEeeCCCcccc-chhhhhHHHHHhhh
Q 029884 77 NILVYKVYVDGMPALS-SKERKATLREFYAI 106 (186)
Q Consensus 77 ~iliykvy~DGk~~~s-~~~Rkati~efYa~ 106 (186)
.|++-++|.||.+... ..++-.|+.+|.+-
T Consensus 2 ~V~Ler~YlDGevseE~~~Eti~s~ed~w~~ 32 (51)
T PF08977_consen 2 TVILERVYLDGEVSEEIKEETIWSMEDFWAK 32 (51)
T ss_dssp EEEEEEE-SSS-EEEEEEEEEEEEHHHHHHH
T ss_pred EEEEEEEEecCceeEEEEEeeeccHHHHHHh
Confidence 5788999999998654 34555666666543
No 105
>PHA00626 hypothetical protein
Probab=21.27 E-value=51 Score=23.33 Aligned_cols=24 Identities=13% Similarity=0.027 Sum_probs=17.2
Q ss_pred ccccccccccCCCcccCCCCcccH
Q 029884 154 DECGICMENCTKMVLPNCGHSLCV 177 (186)
Q Consensus 154 ~eC~IClE~~~~~Vl~~CGH~FC~ 177 (186)
..|+||-.....-+-+.|||.|=.
T Consensus 12 vrcg~cr~~snrYkCkdCGY~ft~ 35 (59)
T PHA00626 12 AKEKTMRGWSDDYVCCDCGYNDSK 35 (59)
T ss_pred eeeceecccCcceEcCCCCCeech
Confidence 367777776667777889988743
No 106
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=20.95 E-value=45 Score=31.32 Aligned_cols=32 Identities=28% Similarity=0.765 Sum_probs=27.4
Q ss_pred CcccccccccccCCCcccCCC--CcccHHHHhcc
Q 029884 152 RNDECGICMENCTKMVLPNCG--HSLCVNCFHDW 183 (186)
Q Consensus 152 ~e~eC~IClE~~~~~Vl~~CG--H~FC~~Cl~~W 183 (186)
+..+|-.|-+....+...+|. |+-|..|++.+
T Consensus 220 ~ni~C~~Ctdv~~~vlvf~Cns~HvtC~dCFr~y 253 (446)
T KOG0006|consen 220 RNITCITCTDVRSPVLVFQCNSRHVTCLDCFRLY 253 (446)
T ss_pred ccceeEEecCCccceEEEecCCceeehHHhhhhH
Confidence 456899999988887778898 99999999865
No 107
>PF08403 AA_permease_N: Amino acid permease N-terminal; InterPro: IPR013612 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. These proteins appear to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found to the N terminus of the amino acid permease domain (IPR004841 from INTERPRO) in metazoan Na-K-Cl cotransporters.
Probab=20.83 E-value=59 Score=23.79 Aligned_cols=14 Identities=36% Similarity=0.555 Sum_probs=11.2
Q ss_pred hcchHHHHhhhhhh
Q 029884 107 IYPSLRQLESEFSE 120 (186)
Q Consensus 107 I~psLqqL~~~v~d 120 (186)
.-|||++||..+.+
T Consensus 39 ~RPSL~~Lh~~~~~ 52 (74)
T PF08403_consen 39 SRPSLDELHSQLEK 52 (74)
T ss_pred CCCCHHHHHHHhhc
Confidence 56999999976664
No 108
>PF02148 zf-UBP: Zn-finger in ubiquitin-hydrolases and other protein; InterPro: IPR001607 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents UBP-type zinc finger domains, which display some similarity with the Zn-binding domain of the insulinase family. The UBP-type zinc finger domain is found only in a small subfamily of ubiquitin C-terminal hydrolases (deubiquitinases or UBP) [, ], All members of this subfamily are isopeptidase-T, which are known to cleave isopeptide bonds between ubiquitin moieties. Some of the proteins containing an UBP zinc finger include: Homo sapiens (Human) deubiquitinating enzyme 13 (UBPD) Human deubiquitinating enzyme 5 (UBP5) Dictyostelium discoideum (Slime mold) deubiquitinating enzyme A (UBPA) Saccharomyces cerevisiae (Baker's yeast) deubiquitinating enzyme 8 (UBP8) Yeast deubiquitinating enzyme 14 (UBP14) More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3GV4_A 3PHD_B 3C5K_A 2UZG_A 3IHP_B 2G43_B 2G45_D 2I50_A 3MHH_A 3MHS_A ....
Probab=20.40 E-value=35 Score=23.24 Aligned_cols=23 Identities=22% Similarity=0.561 Sum_probs=13.5
Q ss_pred ccccccc-cCCCcccCCCCcccHH
Q 029884 156 CGICMEN-CTKMVLPNCGHSLCVN 178 (186)
Q Consensus 156 C~IClE~-~~~~Vl~~CGH~FC~~ 178 (186)
|..|... ....+-+.|||.+|..
T Consensus 1 C~~C~~~~~~lw~CL~Cg~~~C~~ 24 (63)
T PF02148_consen 1 CSVCGSTNSNLWLCLTCGYVGCGR 24 (63)
T ss_dssp -SSSHTCSSSEEEETTTS-EEETT
T ss_pred CCCCCCcCCceEEeCCCCcccccC
Confidence 5566654 3334456799999984
No 109
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=20.01 E-value=86 Score=29.50 Aligned_cols=53 Identities=23% Similarity=0.341 Sum_probs=28.8
Q ss_pred hhhhhhhHHHhhhCCccCCCCcccccccc--cccC-CCcccC-CCCcccHHHHhccc
Q 029884 132 EISSRKRVEERRKLSDKDLDRNDECGICM--ENCT-KMVLPN-CGHSLCVNCFHDWY 184 (186)
Q Consensus 132 ~~~~kk~~e~~~~l~~~d~~~e~eC~ICl--E~~~-~~Vl~~-CGH~FC~~Cl~~W~ 184 (186)
.+|.+..+|+-.....--+-..--||.=+ |+.. ++.-.+ ||-+||++|.+.+.
T Consensus 299 ~rYQr~atEe~vlq~gGVlCP~pgCG~gll~EPD~rkvtC~~gCgf~FCR~C~e~yh 355 (446)
T KOG0006|consen 299 NRYQRYATEECVLQMGGVLCPRPGCGAGLLPEPDQRKVTCEGGCGFAFCRECKEAYH 355 (446)
T ss_pred HHHHHhhhhhheeecCCEecCCCCCCcccccCCCCCcccCCCCchhHhHHHHHhhhc
Confidence 46666666643322222223344555443 3322 222334 99999999998764
Done!