Query 029884
Match_columns 186
No_of_seqs 182 out of 953
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 07:52:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029884.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029884hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ysj_A Tripartite motif-contai 99.0 7.9E-11 2.7E-15 78.7 2.6 36 150-185 17-52 (63)
2 2ecj_A Tripartite motif-contai 99.0 1.8E-10 6.2E-15 75.1 3.8 35 150-184 12-46 (58)
3 2egp_A Tripartite motif-contai 99.0 1.9E-10 6.5E-15 79.4 3.1 36 150-185 9-44 (79)
4 1t1h_A Gspef-atpub14, armadill 99.0 1.3E-10 4.5E-15 80.5 1.9 37 149-185 4-40 (78)
5 2ecy_A TNF receptor-associated 98.9 3.4E-10 1.2E-14 76.4 2.5 35 150-184 12-46 (66)
6 3ztg_A E3 ubiquitin-protein li 98.9 3.7E-10 1.3E-14 80.5 2.6 36 149-184 9-45 (92)
7 2ysl_A Tripartite motif-contai 98.9 4.1E-10 1.4E-14 76.7 2.7 36 150-185 17-52 (73)
8 2yur_A Retinoblastoma-binding 98.9 3.9E-10 1.3E-14 78.1 2.1 37 149-185 11-48 (74)
9 4ayc_A E3 ubiquitin-protein li 98.9 6.4E-10 2.2E-14 85.6 3.3 35 151-185 51-85 (138)
10 2csy_A Zinc finger protein 183 98.9 5.8E-10 2E-14 78.0 2.6 36 150-185 12-47 (81)
11 2d8t_A Dactylidin, ring finger 98.9 5.9E-10 2E-14 76.4 2.6 35 151-185 13-47 (71)
12 2ecw_A Tripartite motif-contai 98.9 7.9E-10 2.7E-14 76.5 2.9 35 150-184 16-50 (85)
13 2djb_A Polycomb group ring fin 98.9 9E-10 3.1E-14 75.6 2.6 35 150-184 12-47 (72)
14 2ct2_A Tripartite motif protei 98.8 1.3E-09 4.3E-14 76.4 2.9 36 149-184 11-50 (88)
15 2ecv_A Tripartite motif-contai 98.8 1.4E-09 4.8E-14 75.2 2.6 35 150-184 16-50 (85)
16 2kr4_A Ubiquitin conjugation f 98.8 1.2E-09 4E-14 78.5 2.2 36 149-184 10-45 (85)
17 3lrq_A E3 ubiquitin-protein li 98.8 1E-09 3.4E-14 80.4 1.1 35 151-185 20-55 (100)
18 3l11_A E3 ubiquitin-protein li 98.8 1.2E-09 4.1E-14 81.0 1.4 35 151-185 13-47 (115)
19 3ng2_A RNF4, snurf, ring finge 98.8 1E-09 3.5E-14 74.2 0.8 36 150-185 7-49 (71)
20 1g25_A CDK-activating kinase a 98.8 1.1E-09 3.8E-14 73.6 0.7 33 152-184 2-39 (65)
21 1bor_A Transcription factor PM 98.8 2.4E-09 8.1E-14 71.0 2.2 34 151-184 4-37 (56)
22 2ecn_A Ring finger protein 141 98.8 2.6E-09 9E-14 72.4 2.4 35 150-185 12-46 (70)
23 2ckl_A Polycomb group ring fin 98.8 8.3E-10 2.8E-14 81.2 -0.3 35 151-185 13-48 (108)
24 3fl2_A E3 ubiquitin-protein li 98.7 1.5E-09 5.3E-14 81.6 1.1 34 151-184 50-83 (124)
25 2ea6_A Ring finger protein 4; 98.7 1.6E-09 5.5E-14 72.5 1.0 36 150-185 12-54 (69)
26 2kre_A Ubiquitin conjugation f 98.7 3.1E-09 1E-13 78.9 2.4 37 149-185 25-61 (100)
27 2yu4_A E3 SUMO-protein ligase 98.7 3.4E-09 1.2E-13 77.1 2.3 36 150-185 4-40 (94)
28 1wgm_A Ubiquitin conjugation f 98.7 4.6E-09 1.6E-13 77.6 2.8 37 149-185 18-55 (98)
29 2y43_A E3 ubiquitin-protein li 98.7 2.4E-09 8.2E-14 77.5 1.2 34 152-185 21-55 (99)
30 1jm7_A BRCA1, breast cancer ty 98.7 2.3E-09 7.8E-14 78.4 0.9 34 152-185 20-53 (112)
31 3knv_A TNF receptor-associated 98.7 4.4E-09 1.5E-13 82.1 2.4 37 149-185 27-63 (141)
32 1jm7_B BARD1, BRCA1-associated 98.7 3.7E-09 1.3E-13 79.1 1.8 35 151-185 20-55 (117)
33 1iym_A EL5; ring-H2 finger, ub 98.7 6E-09 2E-13 67.4 2.5 35 151-185 3-41 (55)
34 2c2l_A CHIP, carboxy terminus 98.7 4.8E-09 1.6E-13 86.4 2.3 36 149-184 204-239 (281)
35 2xeu_A Ring finger protein 4; 98.7 2.5E-09 8.7E-14 70.6 0.3 34 152-185 2-42 (64)
36 3hct_A TNF receptor-associated 98.7 6.2E-09 2.1E-13 77.9 2.2 36 150-185 15-50 (118)
37 2ecm_A Ring finger and CHY zin 98.6 7.2E-09 2.5E-13 66.9 1.5 34 152-185 4-41 (55)
38 1z6u_A NP95-like ring finger p 98.6 5E-09 1.7E-13 82.5 0.7 35 151-185 76-110 (150)
39 1chc_A Equine herpes virus-1 r 98.6 9E-09 3.1E-13 69.2 1.5 35 151-185 3-38 (68)
40 1rmd_A RAG1; V(D)J recombinati 98.6 7.2E-09 2.5E-13 76.9 1.1 34 152-185 22-55 (116)
41 1e4u_A Transcriptional repress 98.6 2.4E-08 8.1E-13 71.2 3.7 36 149-184 7-46 (78)
42 2kiz_A E3 ubiquitin-protein li 98.6 1.5E-08 5.1E-13 68.5 2.5 36 150-185 11-49 (69)
43 1v87_A Deltex protein 2; ring- 98.6 1.3E-08 4.6E-13 74.9 2.0 34 151-184 23-74 (114)
44 2ckl_B Ubiquitin ligase protei 98.6 5.5E-09 1.9E-13 82.1 -0.1 35 151-185 52-87 (165)
45 2ect_A Ring finger protein 126 98.6 1.3E-08 4.6E-13 70.2 1.8 36 150-185 12-50 (78)
46 2l0b_A E3 ubiquitin-protein li 98.6 1.5E-08 5.2E-13 72.9 1.5 35 151-185 38-75 (91)
47 2ep4_A Ring finger protein 24; 98.6 2.5E-08 8.4E-13 68.3 2.5 36 150-185 12-50 (74)
48 4ic3_A E3 ubiquitin-protein li 98.5 3.1E-08 1.1E-12 68.9 1.3 33 152-184 23-56 (74)
49 1x4j_A Ring finger protein 38; 98.4 3.6E-08 1.2E-12 67.9 1.1 35 151-185 21-58 (75)
50 2f42_A STIP1 homology and U-bo 98.4 6.2E-08 2.1E-12 79.4 2.4 38 147-184 100-137 (179)
51 1wim_A KIAA0161 protein; ring 98.4 5.1E-08 1.8E-12 70.2 1.5 33 152-184 4-39 (94)
52 2ecl_A Ring-box protein 2; RNF 98.4 9.1E-08 3.1E-12 67.6 2.3 34 152-185 14-62 (81)
53 2ecg_A Baculoviral IAP repeat- 98.3 1.6E-07 5.4E-12 65.2 1.7 32 152-183 24-56 (75)
54 2y1n_A E3 ubiquitin-protein li 98.2 3.1E-07 1.1E-11 83.3 2.1 34 152-185 331-364 (389)
55 4ap4_A E3 ubiquitin ligase RNF 98.2 1.8E-07 6.3E-12 69.1 0.1 35 151-185 70-111 (133)
56 3htk_C E3 SUMO-protein ligase 98.2 4.5E-07 1.5E-11 78.8 2.3 35 151-185 179-214 (267)
57 2yho_A E3 ubiquitin-protein li 98.2 3.5E-07 1.2E-11 64.8 1.0 33 152-184 17-50 (79)
58 2vje_A E3 ubiquitin-protein li 98.1 3.1E-07 1.1E-11 62.5 -0.0 34 151-184 6-42 (64)
59 2ea5_A Cell growth regulator w 98.1 1.1E-06 3.8E-11 60.7 2.7 33 150-182 12-45 (68)
60 3dpl_R Ring-box protein 1; ubi 98.0 2E-06 6.7E-11 64.6 2.1 34 152-185 36-87 (106)
61 2vje_B MDM4 protein; proto-onc 98.0 7.3E-07 2.5E-11 60.4 -0.6 33 152-184 6-41 (63)
62 3t6p_A Baculoviral IAP repeat- 97.9 2.5E-06 8.6E-11 75.7 1.3 34 151-184 293-327 (345)
63 2bay_A PRE-mRNA splicing facto 97.9 1.8E-06 6.2E-11 58.7 -0.1 33 153-185 3-36 (61)
64 4a0k_B E3 ubiquitin-protein li 97.7 6.1E-06 2.1E-10 63.3 0.2 34 152-185 47-98 (117)
65 2jun_A Midline-1; B-BOX, TRIM, 97.3 8.3E-05 2.8E-09 53.6 2.4 33 152-184 2-38 (101)
66 4ap4_A E3 ubiquitin ligase RNF 97.1 0.00013 4.3E-09 53.6 0.9 21 165-185 26-46 (133)
67 2d8s_A Cellular modulator of i 97.0 0.00025 8.7E-09 50.5 2.3 35 151-185 13-54 (80)
68 3k1l_B Fancl; UBC, ring, RWD, 96.1 0.002 6.9E-08 58.3 2.3 34 152-185 307-348 (381)
69 2ct0_A Non-SMC element 1 homol 96.0 0.0038 1.3E-07 44.2 2.7 34 152-185 14-48 (74)
70 1vyx_A ORF K3, K3RING; zinc-bi 94.8 0.016 5.6E-07 38.9 2.7 36 150-185 3-43 (60)
71 3vk6_A E3 ubiquitin-protein li 94.1 0.012 4.2E-07 44.4 0.7 30 155-184 3-33 (101)
72 2jmo_A Parkin; IBR, E3 ligase, 88.6 0.088 3E-06 37.1 0.1 16 170-185 55-70 (80)
73 1wd2_A Ariadne-1 protein homol 86.2 0.2 6.7E-06 33.9 0.7 33 152-184 5-45 (60)
74 1joc_A EEA1, early endosomal a 84.2 0.79 2.7E-05 34.8 3.4 37 146-182 62-102 (125)
75 3nw0_A Non-structural maintena 81.1 0.69 2.4E-05 38.7 2.2 34 152-185 179-213 (238)
76 2yw8_A RUN and FYVE domain-con 77.6 1.3 4.4E-05 31.1 2.3 36 147-182 13-52 (82)
77 2ct7_A Ring finger protein 31; 77.2 0.41 1.4E-05 33.9 -0.4 29 155-183 27-61 (86)
78 1z2q_A LM5-1; membrane protein 76.3 1.3 4.5E-05 31.2 2.1 37 146-182 14-54 (84)
79 3t7l_A Zinc finger FYVE domain 76.2 1.3 4.4E-05 31.7 2.0 33 151-183 18-54 (90)
80 2cs3_A Protein C14ORF4, MY039 74.1 1.3 4.3E-05 32.6 1.5 34 151-184 13-50 (93)
81 1x4u_A Zinc finger, FYVE domai 71.9 2.4 8E-05 29.8 2.5 37 146-182 7-47 (84)
82 2o35_A Hypothetical protein DU 69.1 1.2 4E-05 33.7 0.4 12 174-185 42-53 (105)
83 3fyb_A Protein of unknown func 68.7 1.2 4.2E-05 33.5 0.4 12 174-185 41-52 (104)
84 3m62_A Ubiquitin conjugation f 67.9 2.3 8E-05 42.5 2.4 37 149-185 887-924 (968)
85 1zbd_B Rabphilin-3A; G protein 66.3 3.8 0.00013 31.6 2.8 31 151-181 53-88 (134)
86 1vfy_A Phosphatidylinositol-3- 63.8 3.9 0.00013 27.9 2.3 29 154-182 12-44 (73)
87 3zyq_A Hepatocyte growth facto 62.3 3.3 0.00011 34.0 1.9 32 152-183 163-198 (226)
88 1dvp_A HRS, hepatocyte growth 62.2 3.1 0.00011 33.7 1.7 31 152-182 160-194 (220)
89 1wfk_A Zinc finger, FYVE domai 60.9 5.3 0.00018 28.5 2.6 31 152-182 8-42 (88)
90 2zet_C Melanophilin; complex, 60.7 4.9 0.00017 31.7 2.6 30 151-180 66-100 (153)
91 2pv0_B DNA (cytosine-5)-methyl 60.3 4.8 0.00017 36.3 2.8 35 151-185 91-127 (386)
92 1y02_A CARP2, FYVE-ring finger 58.9 4.3 0.00015 30.9 1.9 32 151-182 17-52 (120)
93 3a1b_A DNA (cytosine-5)-methyl 58.7 4.5 0.00015 32.4 2.1 35 151-185 77-113 (159)
94 3mpx_A FYVE, rhogef and PH dom 53.5 2.8 9.5E-05 36.4 0.0 33 151-183 373-409 (434)
95 1z60_A TFIIH basal transcripti 46.9 11 0.00039 25.3 2.3 27 154-180 16-45 (59)
96 3ql9_A Transcriptional regulat 33.2 19 0.00066 27.6 1.9 33 150-182 54-86 (129)
97 3mjh_B Early endosome antigen 30.0 11 0.00038 22.8 0.1 12 153-164 5-16 (34)
98 1q9u_A Uncharacterized protein 29.6 34 0.0012 24.9 2.7 85 8-106 12-108 (130)
99 2lbm_A Transcriptional regulat 29.5 28 0.00096 27.1 2.3 32 150-181 60-91 (142)
100 2d8v_A Zinc finger FYVE domain 27.8 18 0.00063 25.2 0.8 32 151-183 6-38 (67)
101 3c5k_A HD6, histone deacetylas 25.8 32 0.0011 25.4 1.9 25 153-177 24-48 (109)
102 2l5u_A Chromodomain-helicase-D 25.8 45 0.0015 21.7 2.5 35 147-181 5-39 (61)
103 2ffw_A Midline-1; B-BOX, ring 23.8 45 0.0015 22.8 2.2 31 152-182 29-62 (78)
104 2lri_C Autoimmune regulator; Z 21.2 77 0.0026 21.1 3.0 30 152-181 11-40 (66)
105 1mm2_A MI2-beta; PHD, zinc fin 20.7 48 0.0017 21.6 1.8 31 151-181 7-37 (61)
106 2csz_A Synaptotagmin-like prot 20.6 43 0.0015 23.7 1.6 30 151-180 23-57 (76)
107 2uzg_A Ubiquitin carboxyl-term 20.3 42 0.0014 24.0 1.6 26 153-178 25-53 (97)
108 2l5q_A Uncharacterized protein 20.3 47 0.0016 26.1 2.0 26 85-110 73-100 (142)
No 1
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.03 E-value=7.9e-11 Score=78.72 Aligned_cols=36 Identities=31% Similarity=0.719 Sum_probs=32.7
Q ss_pred CCCcccccccccccCCCcccCCCCcccHHHHhcccC
Q 029884 150 LDRNDECGICMENCTKMVLPNCGHSLCVNCFHDWYP 185 (186)
Q Consensus 150 ~~~e~eC~IClE~~~~~Vl~~CGH~FC~~Cl~~W~~ 185 (186)
.+++.+|+||++...+|+.++|||.||..||.+|..
T Consensus 17 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~ 52 (63)
T 2ysj_A 17 LQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGE 52 (63)
T ss_dssp CCCCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHH
T ss_pred CccCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHH
Confidence 457789999999999999999999999999999963
No 2
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.02 E-value=1.8e-10 Score=75.12 Aligned_cols=35 Identities=31% Similarity=0.988 Sum_probs=31.8
Q ss_pred CCCcccccccccccCCCcccCCCCcccHHHHhccc
Q 029884 150 LDRNDECGICMENCTKMVLPNCGHSLCVNCFHDWY 184 (186)
Q Consensus 150 ~~~e~eC~IClE~~~~~Vl~~CGH~FC~~Cl~~W~ 184 (186)
..++..|+||++...++++++|||.||..|+.+|.
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~ 46 (58)
T 2ecj_A 12 LQVEASCSVCLEYLKEPVIIECGHNFCKACITRWW 46 (58)
T ss_dssp SCCCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHT
T ss_pred cccCCCCccCCcccCccEeCCCCCccCHHHHHHHH
Confidence 35678999999999999999999999999999994
No 3
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=98.98 E-value=1.9e-10 Score=79.36 Aligned_cols=36 Identities=33% Similarity=0.673 Sum_probs=32.8
Q ss_pred CCCcccccccccccCCCcccCCCCcccHHHHhcccC
Q 029884 150 LDRNDECGICMENCTKMVLPNCGHSLCVNCFHDWYP 185 (186)
Q Consensus 150 ~~~e~eC~IClE~~~~~Vl~~CGH~FC~~Cl~~W~~ 185 (186)
++++.+|+||++.+.+|+.++|||+||..|+.+|..
T Consensus 9 ~~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~ 44 (79)
T 2egp_A 9 VQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNK 44 (79)
T ss_dssp CCCCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCC
T ss_pred cccCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHH
Confidence 457889999999999999899999999999999975
No 4
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=98.97 E-value=1.3e-10 Score=80.48 Aligned_cols=37 Identities=16% Similarity=0.361 Sum_probs=33.7
Q ss_pred CCCCcccccccccccCCCcccCCCCcccHHHHhcccC
Q 029884 149 DLDRNDECGICMENCTKMVLPNCGHSLCVNCFHDWYP 185 (186)
Q Consensus 149 d~~~e~eC~IClE~~~~~Vl~~CGH~FC~~Cl~~W~~ 185 (186)
+..+++.|+||++.+.+||.++|||+||..||.+|..
T Consensus 4 ~~~~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~ 40 (78)
T 1t1h_A 4 EFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLD 40 (78)
T ss_dssp CCSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHT
T ss_pred CCcccCCCCCccccccCCEEcCCCCeecHHHHHHHHH
Confidence 4567899999999999999999999999999999974
No 5
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.92 E-value=3.4e-10 Score=76.38 Aligned_cols=35 Identities=20% Similarity=0.556 Sum_probs=32.2
Q ss_pred CCCcccccccccccCCCcccCCCCcccHHHHhccc
Q 029884 150 LDRNDECGICMENCTKMVLPNCGHSLCVNCFHDWY 184 (186)
Q Consensus 150 ~~~e~eC~IClE~~~~~Vl~~CGH~FC~~Cl~~W~ 184 (186)
.+++..|+||++...+++.++|||.||..|+.+|.
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~ 46 (66)
T 2ecy_A 12 VEDKYKCEKCHLVLCSPKQTECGHRFCESCMAALL 46 (66)
T ss_dssp CCCCEECTTTCCEESSCCCCSSSCCCCHHHHHHHH
T ss_pred CCcCCCCCCCChHhcCeeECCCCCHHHHHHHHHHH
Confidence 45678999999999999999999999999999996
No 6
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=98.92 E-value=3.7e-10 Score=80.46 Aligned_cols=36 Identities=28% Similarity=0.555 Sum_probs=32.5
Q ss_pred CCCCcccccccccccCCCcccC-CCCcccHHHHhccc
Q 029884 149 DLDRNDECGICMENCTKMVLPN-CGHSLCVNCFHDWY 184 (186)
Q Consensus 149 d~~~e~eC~IClE~~~~~Vl~~-CGH~FC~~Cl~~W~ 184 (186)
++.+++.|+||++.+.+||+++ |||+||..||.+|.
T Consensus 9 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~ 45 (92)
T 3ztg_A 9 PIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTAL 45 (92)
T ss_dssp CCCTTTEETTTTEECSSCEECTTTCCEECHHHHHHHH
T ss_pred cCCcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHH
Confidence 3467899999999999999888 99999999999985
No 7
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.92 E-value=4.1e-10 Score=76.73 Aligned_cols=36 Identities=31% Similarity=0.719 Sum_probs=32.6
Q ss_pred CCCcccccccccccCCCcccCCCCcccHHHHhcccC
Q 029884 150 LDRNDECGICMENCTKMVLPNCGHSLCVNCFHDWYP 185 (186)
Q Consensus 150 ~~~e~eC~IClE~~~~~Vl~~CGH~FC~~Cl~~W~~ 185 (186)
++++.+|+||++...+++.++|||.||..|+.+|..
T Consensus 17 ~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~ 52 (73)
T 2ysl_A 17 LQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGE 52 (73)
T ss_dssp CCCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCS
T ss_pred CccCCEeccCCcccCCeEEcCCCChhhHHHHHHHHH
Confidence 456789999999999999889999999999999974
No 8
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=98.90 E-value=3.9e-10 Score=78.12 Aligned_cols=37 Identities=27% Similarity=0.520 Sum_probs=32.7
Q ss_pred CCCCcccccccccccCCCcccC-CCCcccHHHHhcccC
Q 029884 149 DLDRNDECGICMENCTKMVLPN-CGHSLCVNCFHDWYP 185 (186)
Q Consensus 149 d~~~e~eC~IClE~~~~~Vl~~-CGH~FC~~Cl~~W~~ 185 (186)
+..++..|+||++.+.+||.++ |||+||..||.+|..
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~ 48 (74)
T 2yur_A 11 PIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALL 48 (74)
T ss_dssp CSCGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHH
T ss_pred cCCCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHH
Confidence 3456789999999999999888 999999999999963
No 9
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=98.89 E-value=6.4e-10 Score=85.57 Aligned_cols=35 Identities=34% Similarity=0.844 Sum_probs=31.8
Q ss_pred CCcccccccccccCCCcccCCCCcccHHHHhcccC
Q 029884 151 DRNDECGICMENCTKMVLPNCGHSLCVNCFHDWYP 185 (186)
Q Consensus 151 ~~e~eC~IClE~~~~~Vl~~CGH~FC~~Cl~~W~~ 185 (186)
+++..|+||++.+.+||+++|||+||..|+..|..
T Consensus 51 ~~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~ 85 (138)
T 4ayc_A 51 ENELQCIICSEYFIEAVTLNCAHSFCSYCINEWMK 85 (138)
T ss_dssp HHHSBCTTTCSBCSSEEEETTSCEEEHHHHHHHTT
T ss_pred cccCCCcccCcccCCceECCCCCCccHHHHHHHHH
Confidence 34678999999999999999999999999999975
No 10
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.89 E-value=5.8e-10 Score=78.05 Aligned_cols=36 Identities=22% Similarity=0.539 Sum_probs=32.3
Q ss_pred CCCcccccccccccCCCcccCCCCcccHHHHhcccC
Q 029884 150 LDRNDECGICMENCTKMVLPNCGHSLCVNCFHDWYP 185 (186)
Q Consensus 150 ~~~e~eC~IClE~~~~~Vl~~CGH~FC~~Cl~~W~~ 185 (186)
.+.+.+|+||++...+|++++|||.||..|+..|..
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~ 47 (81)
T 2csy_A 12 EEIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFR 47 (81)
T ss_dssp CCCCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHH
T ss_pred CCCCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHH
Confidence 346789999999999999999999999999999963
No 11
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.88 E-value=5.9e-10 Score=76.36 Aligned_cols=35 Identities=29% Similarity=0.604 Sum_probs=31.8
Q ss_pred CCcccccccccccCCCcccCCCCcccHHHHhcccC
Q 029884 151 DRNDECGICMENCTKMVLPNCGHSLCVNCFHDWYP 185 (186)
Q Consensus 151 ~~e~eC~IClE~~~~~Vl~~CGH~FC~~Cl~~W~~ 185 (186)
.++.+|+||++...+++.++|||.||..|+.+|..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~ 47 (71)
T 2d8t_A 13 LTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASW 47 (71)
T ss_dssp SSCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTT
T ss_pred CCCCCCccCCcccCCCEEccCCCHHHHHHHHHHHH
Confidence 45789999999999999889999999999999965
No 12
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.87 E-value=7.9e-10 Score=76.47 Aligned_cols=35 Identities=31% Similarity=0.717 Sum_probs=31.9
Q ss_pred CCCcccccccccccCCCcccCCCCcccHHHHhccc
Q 029884 150 LDRNDECGICMENCTKMVLPNCGHSLCVNCFHDWY 184 (186)
Q Consensus 150 ~~~e~eC~IClE~~~~~Vl~~CGH~FC~~Cl~~W~ 184 (186)
++++.+|+||++...++++++|||.||..|+.+|.
T Consensus 16 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~ 50 (85)
T 2ecw_A 16 IKEEVTCPICLELLKEPVSADCNHSFCRACITLNY 50 (85)
T ss_dssp CCTTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHH
T ss_pred CccCCCCcCCChhhCcceeCCCCCHHHHHHHHHHH
Confidence 45678999999999999999999999999999985
No 13
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.85 E-value=9e-10 Score=75.61 Aligned_cols=35 Identities=23% Similarity=0.528 Sum_probs=30.9
Q ss_pred CCCcccccccccccCCCccc-CCCCcccHHHHhccc
Q 029884 150 LDRNDECGICMENCTKMVLP-NCGHSLCVNCFHDWY 184 (186)
Q Consensus 150 ~~~e~eC~IClE~~~~~Vl~-~CGH~FC~~Cl~~W~ 184 (186)
++++..|+||++...+++.. +|||.||..||.+|.
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~ 47 (72)
T 2djb_A 12 LTPYILCSICKGYLIDATTITECLHTFCKSCIVRHF 47 (72)
T ss_dssp CCGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHH
T ss_pred cCCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHH
Confidence 45678999999999888764 999999999999996
No 14
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.83 E-value=1.3e-09 Score=76.42 Aligned_cols=36 Identities=39% Similarity=0.827 Sum_probs=31.8
Q ss_pred CCCCcccccccccccCC----CcccCCCCcccHHHHhccc
Q 029884 149 DLDRNDECGICMENCTK----MVLPNCGHSLCVNCFHDWY 184 (186)
Q Consensus 149 d~~~e~eC~IClE~~~~----~Vl~~CGH~FC~~Cl~~W~ 184 (186)
+.+++.+|+||++.+.+ +++++|||.||..|+.+|.
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~ 50 (88)
T 2ct2_A 11 ALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLL 50 (88)
T ss_dssp CCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHH
T ss_pred hccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHH
Confidence 34577899999999887 8888999999999999995
No 15
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.82 E-value=1.4e-09 Score=75.22 Aligned_cols=35 Identities=31% Similarity=0.707 Sum_probs=31.9
Q ss_pred CCCcccccccccccCCCcccCCCCcccHHHHhccc
Q 029884 150 LDRNDECGICMENCTKMVLPNCGHSLCVNCFHDWY 184 (186)
Q Consensus 150 ~~~e~eC~IClE~~~~~Vl~~CGH~FC~~Cl~~W~ 184 (186)
+.++.+|+||++...+++.++|||.||..|+..|.
T Consensus 16 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~ 50 (85)
T 2ecv_A 16 VKEEVTCPICLELLTQPLSLDCGHSFCQACLTANH 50 (85)
T ss_dssp CCCCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHH
T ss_pred ccCCCCCCCCCcccCCceeCCCCCHHHHHHHHHHH
Confidence 45678999999999999989999999999999985
No 16
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.81 E-value=1.2e-09 Score=78.50 Aligned_cols=36 Identities=11% Similarity=-0.101 Sum_probs=33.0
Q ss_pred CCCCcccccccccccCCCcccCCCCcccHHHHhccc
Q 029884 149 DLDRNDECGICMENCTKMVLPNCGHSLCVNCFHDWY 184 (186)
Q Consensus 149 d~~~e~eC~IClE~~~~~Vl~~CGH~FC~~Cl~~W~ 184 (186)
+..+++.|+||++++.+||++.|||+||..||..|.
T Consensus 10 ~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l 45 (85)
T 2kr4_A 10 DAPDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHL 45 (85)
T ss_dssp TCCTTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHH
T ss_pred cCchheECcccCchhcCCeECCCCCEECHHHHHHHH
Confidence 345789999999999999999999999999999995
No 17
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=98.79 E-value=1e-09 Score=80.37 Aligned_cols=35 Identities=31% Similarity=0.778 Sum_probs=31.9
Q ss_pred CCcccccccccccCCCcc-cCCCCcccHHHHhcccC
Q 029884 151 DRNDECGICMENCTKMVL-PNCGHSLCVNCFHDWYP 185 (186)
Q Consensus 151 ~~e~eC~IClE~~~~~Vl-~~CGH~FC~~Cl~~W~~ 185 (186)
+++..|+||++.+.+||. ++|||.||..||..|..
T Consensus 20 ~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~ 55 (100)
T 3lrq_A 20 AEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLT 55 (100)
T ss_dssp HHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHH
T ss_pred CCCCCCccCCccccCccccCCCCChhhHHHHHHHHH
Confidence 457899999999999998 99999999999999953
No 18
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.78 E-value=1.2e-09 Score=81.03 Aligned_cols=35 Identities=37% Similarity=0.738 Sum_probs=31.8
Q ss_pred CCcccccccccccCCCcccCCCCcccHHHHhcccC
Q 029884 151 DRNDECGICMENCTKMVLPNCGHSLCVNCFHDWYP 185 (186)
Q Consensus 151 ~~e~eC~IClE~~~~~Vl~~CGH~FC~~Cl~~W~~ 185 (186)
.+++.|+||++...+||.++|||+||..|+..|..
T Consensus 13 ~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~ 47 (115)
T 3l11_A 13 LSECQCGICMEILVEPVTLPCNHTLCKPCFQSTVE 47 (115)
T ss_dssp HHHHBCTTTCSBCSSCEECTTSCEECHHHHCCCCC
T ss_pred CCCCCCccCCcccCceeEcCCCCHHhHHHHHHHHh
Confidence 35689999999999999889999999999999974
No 19
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=98.78 E-value=1e-09 Score=74.21 Aligned_cols=36 Identities=31% Similarity=0.796 Sum_probs=31.0
Q ss_pred CCCcccccccccccCCC-------cccCCCCcccHHHHhcccC
Q 029884 150 LDRNDECGICMENCTKM-------VLPNCGHSLCVNCFHDWYP 185 (186)
Q Consensus 150 ~~~e~eC~IClE~~~~~-------Vl~~CGH~FC~~Cl~~W~~ 185 (186)
.+++.+|+||++...++ ++++|||.||..|+.+|..
T Consensus 7 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~ 49 (71)
T 3ng2_A 7 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK 49 (71)
T ss_dssp CTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHH
T ss_pred CCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHH
Confidence 45678999999987765 7889999999999999963
No 20
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.77 E-value=1.1e-09 Score=73.61 Aligned_cols=33 Identities=24% Similarity=0.715 Sum_probs=28.0
Q ss_pred Cccccccccc-ccCCC----cccCCCCcccHHHHhccc
Q 029884 152 RNDECGICME-NCTKM----VLPNCGHSLCVNCFHDWY 184 (186)
Q Consensus 152 ~e~eC~IClE-~~~~~----Vl~~CGH~FC~~Cl~~W~ 184 (186)
++..|+||++ ...++ ++++|||+||..|+.+|.
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~ 39 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLF 39 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHH
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHH
Confidence 4678999999 76666 467899999999999994
No 21
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.76 E-value=2.4e-09 Score=70.97 Aligned_cols=34 Identities=24% Similarity=0.399 Sum_probs=30.4
Q ss_pred CCcccccccccccCCCcccCCCCcccHHHHhccc
Q 029884 151 DRNDECGICMENCTKMVLPNCGHSLCVNCFHDWY 184 (186)
Q Consensus 151 ~~e~eC~IClE~~~~~Vl~~CGH~FC~~Cl~~W~ 184 (186)
.++..|+||++.+.+|++++|||+||..|+..|.
T Consensus 4 ~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~ 37 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCPKLLPCLHTLCSGCLEASG 37 (56)
T ss_dssp CCCSSCSSSCSSCBCCSCSTTSCCSBTTTCSSSS
T ss_pred ccCCCceEeCCccCCeEEcCCCCcccHHHHccCC
Confidence 4567999999999999999999999999998764
No 22
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.76 E-value=2.6e-09 Score=72.45 Aligned_cols=35 Identities=34% Similarity=0.967 Sum_probs=30.6
Q ss_pred CCCcccccccccccCCCcccCCCCcccHHHHhcccC
Q 029884 150 LDRNDECGICMENCTKMVLPNCGHSLCVNCFHDWYP 185 (186)
Q Consensus 150 ~~~e~eC~IClE~~~~~Vl~~CGH~FC~~Cl~~W~~ 185 (186)
..++.+|+||++...+ ++++|||.||..|+.+|..
T Consensus 12 ~~~~~~C~IC~~~~~~-~~~~CgH~fc~~Ci~~~~~ 46 (70)
T 2ecn_A 12 LTDEEECCICMDGRAD-LILPCAHSFCQKCIDKWSD 46 (70)
T ss_dssp CCCCCCCSSSCCSCCS-EEETTTEEECHHHHHHSSC
T ss_pred CCCCCCCeeCCcCccC-cccCCCCcccHHHHHHHHH
Confidence 3467899999999888 7788999999999999965
No 23
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=98.75 E-value=8.3e-10 Score=81.24 Aligned_cols=35 Identities=20% Similarity=0.478 Sum_probs=31.5
Q ss_pred CCcccccccccccCCCccc-CCCCcccHHHHhcccC
Q 029884 151 DRNDECGICMENCTKMVLP-NCGHSLCVNCFHDWYP 185 (186)
Q Consensus 151 ~~e~eC~IClE~~~~~Vl~-~CGH~FC~~Cl~~W~~ 185 (186)
.++..|+||++...+||.+ +|||+||..|+.+|..
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~ 48 (108)
T 2ckl_A 13 NPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLE 48 (108)
T ss_dssp GGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHT
T ss_pred CCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHH
Confidence 4688999999999999876 9999999999999964
No 24
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=98.75 E-value=1.5e-09 Score=81.58 Aligned_cols=34 Identities=21% Similarity=0.610 Sum_probs=31.2
Q ss_pred CCcccccccccccCCCcccCCCCcccHHHHhccc
Q 029884 151 DRNDECGICMENCTKMVLPNCGHSLCVNCFHDWY 184 (186)
Q Consensus 151 ~~e~eC~IClE~~~~~Vl~~CGH~FC~~Cl~~W~ 184 (186)
+++..|+||++.+.+||.++|||+||..||..|.
T Consensus 50 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~ 83 (124)
T 3fl2_A 50 EETFQCICCQELVFRPITTVCQHNVCKDCLDRSF 83 (124)
T ss_dssp HHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHH
T ss_pred ccCCCCCcCChHHcCcEEeeCCCcccHHHHHHHH
Confidence 3568999999999999999999999999999985
No 25
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.74 E-value=1.6e-09 Score=72.51 Aligned_cols=36 Identities=31% Similarity=0.796 Sum_probs=30.6
Q ss_pred CCCcccccccccccCCC-------cccCCCCcccHHHHhcccC
Q 029884 150 LDRNDECGICMENCTKM-------VLPNCGHSLCVNCFHDWYP 185 (186)
Q Consensus 150 ~~~e~eC~IClE~~~~~-------Vl~~CGH~FC~~Cl~~W~~ 185 (186)
..++.+|+||++...++ ++++|||.||..|+..|..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~ 54 (69)
T 2ea6_A 12 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK 54 (69)
T ss_dssp TTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHH
T ss_pred CCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHH
Confidence 35678999999987665 7889999999999999953
No 26
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.74 E-value=3.1e-09 Score=78.86 Aligned_cols=37 Identities=11% Similarity=-0.126 Sum_probs=33.6
Q ss_pred CCCCcccccccccccCCCcccCCCCcccHHHHhcccC
Q 029884 149 DLDRNDECGICMENCTKMVLPNCGHSLCVNCFHDWYP 185 (186)
Q Consensus 149 d~~~e~eC~IClE~~~~~Vl~~CGH~FC~~Cl~~W~~ 185 (186)
+..+++.|+||++++.+||++.|||+||..||..|..
T Consensus 25 ~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~ 61 (100)
T 2kre_A 25 DAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLL 61 (100)
T ss_dssp SCSTTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTT
T ss_pred cCcHhhCCcCccCcccCCeECCCCCEEchHHHHHHHH
Confidence 3457899999999999999999999999999999964
No 27
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.73 E-value=3.4e-09 Score=77.12 Aligned_cols=36 Identities=22% Similarity=0.245 Sum_probs=32.2
Q ss_pred CCCcccccccccccCCCccc-CCCCcccHHHHhcccC
Q 029884 150 LDRNDECGICMENCTKMVLP-NCGHSLCVNCFHDWYP 185 (186)
Q Consensus 150 ~~~e~eC~IClE~~~~~Vl~-~CGH~FC~~Cl~~W~~ 185 (186)
...++.||||++++.+||.+ .|||+||..||..|..
T Consensus 4 ~~~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~ 40 (94)
T 2yu4_A 4 GSSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIE 40 (94)
T ss_dssp CSSCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHH
T ss_pred CCcEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHH
Confidence 35689999999999999988 4999999999999963
No 28
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.72 E-value=4.6e-09 Score=77.62 Aligned_cols=37 Identities=8% Similarity=-0.178 Sum_probs=33.7
Q ss_pred CCCCcccccccccccCCCcccCCC-CcccHHHHhcccC
Q 029884 149 DLDRNDECGICMENCTKMVLPNCG-HSLCVNCFHDWYP 185 (186)
Q Consensus 149 d~~~e~eC~IClE~~~~~Vl~~CG-H~FC~~Cl~~W~~ 185 (186)
++.+++.|+||++++.+||++.|| |+||..||..|..
T Consensus 18 ~~p~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~ 55 (98)
T 1wgm_A 18 DACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLL 55 (98)
T ss_dssp SCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTT
T ss_pred cCcHhcCCcCccccccCCeECCCCCeEECHHHHHHHHH
Confidence 345789999999999999999999 9999999999974
No 29
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=98.72 E-value=2.4e-09 Score=77.47 Aligned_cols=34 Identities=26% Similarity=0.724 Sum_probs=30.3
Q ss_pred CcccccccccccCCCccc-CCCCcccHHHHhcccC
Q 029884 152 RNDECGICMENCTKMVLP-NCGHSLCVNCFHDWYP 185 (186)
Q Consensus 152 ~e~eC~IClE~~~~~Vl~-~CGH~FC~~Cl~~W~~ 185 (186)
++..|+||++...+|+.. +|||.||..|+..|..
T Consensus 21 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~ 55 (99)
T 2y43_A 21 DLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLS 55 (99)
T ss_dssp HHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHT
T ss_pred CCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHH
Confidence 468999999999988766 8999999999999964
No 30
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.71 E-value=2.3e-09 Score=78.36 Aligned_cols=34 Identities=29% Similarity=0.617 Sum_probs=31.0
Q ss_pred CcccccccccccCCCcccCCCCcccHHHHhcccC
Q 029884 152 RNDECGICMENCTKMVLPNCGHSLCVNCFHDWYP 185 (186)
Q Consensus 152 ~e~eC~IClE~~~~~Vl~~CGH~FC~~Cl~~W~~ 185 (186)
++.+|+||++...+|+.++|||.||..|+..|..
T Consensus 20 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~ 53 (112)
T 1jm7_A 20 KILECPICLELIKEPVSTKCDHIFCKFCMLKLLN 53 (112)
T ss_dssp HHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHH
T ss_pred CCCCCcccChhhcCeEECCCCCHHHHHHHHHHHH
Confidence 4679999999999999999999999999999964
No 31
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.70 E-value=4.4e-09 Score=82.11 Aligned_cols=37 Identities=22% Similarity=0.565 Sum_probs=33.6
Q ss_pred CCCCcccccccccccCCCcccCCCCcccHHHHhcccC
Q 029884 149 DLDRNDECGICMENCTKMVLPNCGHSLCVNCFHDWYP 185 (186)
Q Consensus 149 d~~~e~eC~IClE~~~~~Vl~~CGH~FC~~Cl~~W~~ 185 (186)
.+++++.|+||++...+||.++|||.||..||.+|..
T Consensus 27 ~l~~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~ 63 (141)
T 3knv_A 27 KLEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILS 63 (141)
T ss_dssp GCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGG
T ss_pred cCCcCcCCCCCChhhcCcEECCCCCccCHHHHHHHHh
Confidence 3567899999999999999999999999999999964
No 32
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.70 E-value=3.7e-09 Score=79.06 Aligned_cols=35 Identities=26% Similarity=0.557 Sum_probs=31.6
Q ss_pred CCcccccccccccCCCccc-CCCCcccHHHHhcccC
Q 029884 151 DRNDECGICMENCTKMVLP-NCGHSLCVNCFHDWYP 185 (186)
Q Consensus 151 ~~e~eC~IClE~~~~~Vl~-~CGH~FC~~Cl~~W~~ 185 (186)
.++..|+||++.+.+||.+ +|||+||..||..|..
T Consensus 20 ~~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~ 55 (117)
T 1jm7_B 20 EKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG 55 (117)
T ss_dssp HHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT
T ss_pred hhCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc
Confidence 3578999999999999988 9999999999999963
No 33
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=98.70 E-value=6e-09 Score=67.43 Aligned_cols=35 Identities=31% Similarity=0.873 Sum_probs=28.7
Q ss_pred CCcccccccccccCC---Cc-ccCCCCcccHHHHhcccC
Q 029884 151 DRNDECGICMENCTK---MV-LPNCGHSLCVNCFHDWYP 185 (186)
Q Consensus 151 ~~e~eC~IClE~~~~---~V-l~~CGH~FC~~Cl~~W~~ 185 (186)
+++.+|+||++.... ++ +++|||.||..|+.+|..
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~ 41 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLG 41 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTT
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHH
Confidence 467899999988665 44 446999999999999975
No 34
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.69 E-value=4.8e-09 Score=86.39 Aligned_cols=36 Identities=11% Similarity=0.027 Sum_probs=32.7
Q ss_pred CCCCcccccccccccCCCcccCCCCcccHHHHhccc
Q 029884 149 DLDRNDECGICMENCTKMVLPNCGHSLCVNCFHDWY 184 (186)
Q Consensus 149 d~~~e~eC~IClE~~~~~Vl~~CGH~FC~~Cl~~W~ 184 (186)
+...++.|+||++++.+||+++|||+||+.||..|.
T Consensus 204 ~~~~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~ 239 (281)
T 2c2l_A 204 DIPDYLCGKISFELMREPCITPSGITYDRKDIEEHL 239 (281)
T ss_dssp CCCSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHH
T ss_pred CCCcccCCcCcCCHhcCCeECCCCCEECHHHHHHHH
Confidence 345688999999999999999999999999999985
No 35
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=98.68 E-value=2.5e-09 Score=70.55 Aligned_cols=34 Identities=32% Similarity=0.838 Sum_probs=29.2
Q ss_pred CcccccccccccCCC-------cccCCCCcccHHHHhcccC
Q 029884 152 RNDECGICMENCTKM-------VLPNCGHSLCVNCFHDWYP 185 (186)
Q Consensus 152 ~e~eC~IClE~~~~~-------Vl~~CGH~FC~~Cl~~W~~ 185 (186)
++.+|+||++...++ ++++|||.||..|+.+|..
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~ 42 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK 42 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHH
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHH
Confidence 467999999987654 7889999999999999963
No 36
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.67 E-value=6.2e-09 Score=77.92 Aligned_cols=36 Identities=31% Similarity=0.695 Sum_probs=32.5
Q ss_pred CCCcccccccccccCCCcccCCCCcccHHHHhcccC
Q 029884 150 LDRNDECGICMENCTKMVLPNCGHSLCVNCFHDWYP 185 (186)
Q Consensus 150 ~~~e~eC~IClE~~~~~Vl~~CGH~FC~~Cl~~W~~ 185 (186)
+++++.|+||++...+||.++|||+||..||.+|..
T Consensus 15 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~ 50 (118)
T 3hct_A 15 LESKYECPICLMALREAVQTPCGHRFCKACIIKSIR 50 (118)
T ss_dssp CCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHH
T ss_pred CCCCCCCCcCChhhcCeEECCcCChhhHHHHHHHHh
Confidence 456789999999999999999999999999999963
No 37
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=98.63 E-value=7.2e-09 Score=66.88 Aligned_cols=34 Identities=26% Similarity=0.682 Sum_probs=28.9
Q ss_pred CcccccccccccCC----CcccCCCCcccHHHHhcccC
Q 029884 152 RNDECGICMENCTK----MVLPNCGHSLCVNCFHDWYP 185 (186)
Q Consensus 152 ~e~eC~IClE~~~~----~Vl~~CGH~FC~~Cl~~W~~ 185 (186)
.+.+|+||++...+ +++++|||.||..|+.+|..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~ 41 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLK 41 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHH
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHH
Confidence 56899999988644 67788999999999999963
No 38
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.63 E-value=5e-09 Score=82.47 Aligned_cols=35 Identities=23% Similarity=0.569 Sum_probs=31.8
Q ss_pred CCcccccccccccCCCcccCCCCcccHHHHhcccC
Q 029884 151 DRNDECGICMENCTKMVLPNCGHSLCVNCFHDWYP 185 (186)
Q Consensus 151 ~~e~eC~IClE~~~~~Vl~~CGH~FC~~Cl~~W~~ 185 (186)
.++..|+||++.+.+||.++|||+||..||..|..
T Consensus 76 ~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~ 110 (150)
T 1z6u_A 76 EQSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFK 110 (150)
T ss_dssp HHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHH
T ss_pred ccCCEeecCChhhcCCEEcCCCCchhHHHHHHHHH
Confidence 35689999999999999999999999999999963
No 39
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=98.61 E-value=9e-09 Score=69.25 Aligned_cols=35 Identities=26% Similarity=0.761 Sum_probs=29.8
Q ss_pred CCcccccccccccCCC-cccCCCCcccHHHHhcccC
Q 029884 151 DRNDECGICMENCTKM-VLPNCGHSLCVNCFHDWYP 185 (186)
Q Consensus 151 ~~e~eC~IClE~~~~~-Vl~~CGH~FC~~Cl~~W~~ 185 (186)
+.+.+|+||++...++ +.++|||.||..|+..|..
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~ 38 (68)
T 1chc_A 3 TVAERCPICLEDPSNYSMALPCLHAFCYVCITRWIR 38 (68)
T ss_dssp CCCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHH
T ss_pred CCCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHh
Confidence 3467999999998774 7788999999999999953
No 40
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.61 E-value=7.2e-09 Score=76.91 Aligned_cols=34 Identities=24% Similarity=0.511 Sum_probs=31.3
Q ss_pred CcccccccccccCCCcccCCCCcccHHHHhcccC
Q 029884 152 RNDECGICMENCTKMVLPNCGHSLCVNCFHDWYP 185 (186)
Q Consensus 152 ~e~eC~IClE~~~~~Vl~~CGH~FC~~Cl~~W~~ 185 (186)
++..|+||++...+||.++|||.||..|+.+|..
T Consensus 22 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~ 55 (116)
T 1rmd_A 22 KSISCQICEHILADPVETSCKHLFCRICILRCLK 55 (116)
T ss_dssp HHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHH
T ss_pred CCCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHh
Confidence 4689999999999999999999999999999963
No 41
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.61 E-value=2.4e-08 Score=71.17 Aligned_cols=36 Identities=28% Similarity=0.648 Sum_probs=28.2
Q ss_pred CCCCcccccccccccC--CCcccC--CCCcccHHHHhccc
Q 029884 149 DLDRNDECGICMENCT--KMVLPN--CGHSLCVNCFHDWY 184 (186)
Q Consensus 149 d~~~e~eC~IClE~~~--~~Vl~~--CGH~FC~~Cl~~W~ 184 (186)
+.+++.+|+||+|..+ ++++.+ |||+||..|+.++.
T Consensus 7 ~~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~ 46 (78)
T 1e4u_A 7 AKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIR 46 (78)
T ss_dssp CCCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHT
T ss_pred ccccCCcCCccCccCccccccccccCCCCCcCHHHHHHHH
Confidence 3467889999999763 444444 99999999999864
No 42
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=98.60 E-value=1.5e-08 Score=68.48 Aligned_cols=36 Identities=22% Similarity=0.548 Sum_probs=29.0
Q ss_pred CCCcccccccccccC---CCcccCCCCcccHHHHhcccC
Q 029884 150 LDRNDECGICMENCT---KMVLPNCGHSLCVNCFHDWYP 185 (186)
Q Consensus 150 ~~~e~eC~IClE~~~---~~Vl~~CGH~FC~~Cl~~W~~ 185 (186)
.+.+.+|+||++... .++.++|||.||..|+..|..
T Consensus 11 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~ 49 (69)
T 2kiz_A 11 EDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLI 49 (69)
T ss_dssp TTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHH
T ss_pred CCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHH
Confidence 345679999998653 456678999999999999963
No 43
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.59 E-value=1.3e-08 Score=74.93 Aligned_cols=34 Identities=29% Similarity=0.721 Sum_probs=28.5
Q ss_pred CCcccccccccccCCCc------------------ccCCCCcccHHHHhccc
Q 029884 151 DRNDECGICMENCTKMV------------------LPNCGHSLCVNCFHDWY 184 (186)
Q Consensus 151 ~~e~eC~IClE~~~~~V------------------l~~CGH~FC~~Cl~~W~ 184 (186)
..+.+|+||++.+..++ +++|||.||..||..|.
T Consensus 23 ~~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl 74 (114)
T 1v87_A 23 APEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMY 74 (114)
T ss_dssp CCSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHH
T ss_pred CCCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHH
Confidence 35679999999875543 68899999999999997
No 44
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.59 E-value=5.5e-09 Score=82.08 Aligned_cols=35 Identities=20% Similarity=0.557 Sum_probs=30.8
Q ss_pred CCcccccccccccCCCccc-CCCCcccHHHHhcccC
Q 029884 151 DRNDECGICMENCTKMVLP-NCGHSLCVNCFHDWYP 185 (186)
Q Consensus 151 ~~e~eC~IClE~~~~~Vl~-~CGH~FC~~Cl~~W~~ 185 (186)
.++..|+||++...+||.+ +|||.||..|+..|..
T Consensus 52 ~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~ 87 (165)
T 2ckl_B 52 HSELMCPICLDMLKNTMTTKECLHRFCADCIITALR 87 (165)
T ss_dssp HHHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHH
T ss_pred CCCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHH
Confidence 4567999999999998865 9999999999999963
No 45
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.58 E-value=1.3e-08 Score=70.23 Aligned_cols=36 Identities=22% Similarity=0.522 Sum_probs=29.1
Q ss_pred CCCcccccccccccCCC---cccCCCCcccHHHHhcccC
Q 029884 150 LDRNDECGICMENCTKM---VLPNCGHSLCVNCFHDWYP 185 (186)
Q Consensus 150 ~~~e~eC~IClE~~~~~---Vl~~CGH~FC~~Cl~~W~~ 185 (186)
...+.+|+||++.+..+ +.++|||.||..||.+|..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~ 50 (78)
T 2ect_A 12 VGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLE 50 (78)
T ss_dssp SSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHT
T ss_pred CCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHH
Confidence 35678999999886543 3457999999999999964
No 46
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=98.55 E-value=1.5e-08 Score=72.87 Aligned_cols=35 Identities=23% Similarity=0.496 Sum_probs=29.0
Q ss_pred CCcccccccccccCC---CcccCCCCcccHHHHhcccC
Q 029884 151 DRNDECGICMENCTK---MVLPNCGHSLCVNCFHDWYP 185 (186)
Q Consensus 151 ~~e~eC~IClE~~~~---~Vl~~CGH~FC~~Cl~~W~~ 185 (186)
+.+.+|+||++.+.. ++.++|||.||..||..|..
T Consensus 38 ~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~ 75 (91)
T 2l0b_A 38 GQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQ 75 (91)
T ss_dssp SSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHT
T ss_pred CCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHH
Confidence 456799999987655 55567999999999999975
No 47
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.55 E-value=2.5e-08 Score=68.25 Aligned_cols=36 Identities=22% Similarity=0.649 Sum_probs=28.8
Q ss_pred CCCcccccccccccCCCcc---cCCCCcccHHHHhcccC
Q 029884 150 LDRNDECGICMENCTKMVL---PNCGHSLCVNCFHDWYP 185 (186)
Q Consensus 150 ~~~e~eC~IClE~~~~~Vl---~~CGH~FC~~Cl~~W~~ 185 (186)
...+.+|+||++....+.. .+|||.||..|+.+|..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~ 50 (74)
T 2ep4_A 12 LNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLE 50 (74)
T ss_dssp CCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHH
T ss_pred CCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHH
Confidence 3567899999998765443 37999999999999963
No 48
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.47 E-value=3.1e-08 Score=68.91 Aligned_cols=33 Identities=30% Similarity=0.704 Sum_probs=30.2
Q ss_pred CcccccccccccCCCcccCCCCc-ccHHHHhccc
Q 029884 152 RNDECGICMENCTKMVLPNCGHS-LCVNCFHDWY 184 (186)
Q Consensus 152 ~e~eC~IClE~~~~~Vl~~CGH~-FC~~Cl~~W~ 184 (186)
++..|+||++...++|+.+|||. ||..|+..|.
T Consensus 23 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~ 56 (74)
T 4ic3_A 23 EEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAVD 56 (74)
T ss_dssp HHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTCS
T ss_pred cCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcCc
Confidence 46799999999999999999999 9999999883
No 49
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.45 E-value=3.6e-08 Score=67.86 Aligned_cols=35 Identities=20% Similarity=0.619 Sum_probs=28.6
Q ss_pred CCcccccccccccCCC---cccCCCCcccHHHHhcccC
Q 029884 151 DRNDECGICMENCTKM---VLPNCGHSLCVNCFHDWYP 185 (186)
Q Consensus 151 ~~e~eC~IClE~~~~~---Vl~~CGH~FC~~Cl~~W~~ 185 (186)
.++.+|+||++....+ +.++|||.||..|+..|..
T Consensus 21 ~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~ 58 (75)
T 1x4j_A 21 SEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLK 58 (75)
T ss_dssp SSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHH
T ss_pred CCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHH
Confidence 4567999999876554 5567999999999999963
No 50
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.43 E-value=6.2e-08 Score=79.38 Aligned_cols=38 Identities=8% Similarity=0.037 Sum_probs=34.3
Q ss_pred ccCCCCcccccccccccCCCcccCCCCcccHHHHhccc
Q 029884 147 DKDLDRNDECGICMENCTKMVLPNCGHSLCVNCFHDWY 184 (186)
Q Consensus 147 ~~d~~~e~eC~IClE~~~~~Vl~~CGH~FC~~Cl~~W~ 184 (186)
..+...++.||||++++.+||+++|||+||..||..|.
T Consensus 100 ~~~ip~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l 137 (179)
T 2f42_A 100 KREIPDYLCGKISFELMREPCITPSGITYDRKDIEEHL 137 (179)
T ss_dssp CCCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHH
T ss_pred ccCCcHhhcccCccccCCCCeECCCCCEECHHHHHHHH
Confidence 44456789999999999999999999999999999986
No 51
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.42 E-value=5.1e-08 Score=70.17 Aligned_cols=33 Identities=15% Similarity=0.620 Sum_probs=27.5
Q ss_pred CcccccccccccCCCcc---cCCCCcccHHHHhccc
Q 029884 152 RNDECGICMENCTKMVL---PNCGHSLCVNCFHDWY 184 (186)
Q Consensus 152 ~e~eC~IClE~~~~~Vl---~~CGH~FC~~Cl~~W~ 184 (186)
++++|+||++....++. ++|||.||..|+.+|.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~ 39 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYV 39 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHH
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHHHHHH
Confidence 57899999998776654 3799999999999864
No 52
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.40 E-value=9.1e-08 Score=67.60 Aligned_cols=34 Identities=29% Similarity=0.682 Sum_probs=27.0
Q ss_pred CcccccccccccCC---------------CcccCCCCcccHHHHhcccC
Q 029884 152 RNDECGICMENCTK---------------MVLPNCGHSLCVNCFHDWYP 185 (186)
Q Consensus 152 ~e~eC~IClE~~~~---------------~Vl~~CGH~FC~~Cl~~W~~ 185 (186)
++.+|+||++.+.. .++++|||.||..||.+|..
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~ 62 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVK 62 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTT
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHH
Confidence 45678888877643 25677999999999999975
No 53
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.31 E-value=1.6e-07 Score=65.24 Aligned_cols=32 Identities=31% Similarity=0.755 Sum_probs=28.7
Q ss_pred CcccccccccccCCCcccCCCCc-ccHHHHhcc
Q 029884 152 RNDECGICMENCTKMVLPNCGHS-LCVNCFHDW 183 (186)
Q Consensus 152 ~e~eC~IClE~~~~~Vl~~CGH~-FC~~Cl~~W 183 (186)
++.+|+||++...++|+++|||. ||..|+...
T Consensus 24 ~~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~~ 56 (75)
T 2ecg_A 24 EEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV 56 (75)
T ss_dssp HHHSCSSSCSSCCCBCCSSSCCCCBCHHHHHHC
T ss_pred CCCCCCcCCCCCCCEEEecCCCHHHHHHHhhCC
Confidence 46789999999999999999999 999999754
No 54
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.23 E-value=3.1e-07 Score=83.26 Aligned_cols=34 Identities=32% Similarity=0.872 Sum_probs=30.9
Q ss_pred CcccccccccccCCCcccCCCCcccHHHHhcccC
Q 029884 152 RNDECGICMENCTKMVLPNCGHSLCVNCFHDWYP 185 (186)
Q Consensus 152 ~e~eC~IClE~~~~~Vl~~CGH~FC~~Cl~~W~~ 185 (186)
...+|+||++...++++++|||.||..|+..|..
T Consensus 331 ~~~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~ 364 (389)
T 2y1n_A 331 TFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQE 364 (389)
T ss_dssp SSSBCTTTSSSBCCEEEETTCCEECHHHHHHHHH
T ss_pred CCCCCCccCcCCCCeEEeCCCChhhHHHHHHHHh
Confidence 3579999999999999999999999999999953
No 55
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.20 E-value=1.8e-07 Score=69.10 Aligned_cols=35 Identities=31% Similarity=0.841 Sum_probs=29.9
Q ss_pred CCcccccccccccCCC-------cccCCCCcccHHHHhcccC
Q 029884 151 DRNDECGICMENCTKM-------VLPNCGHSLCVNCFHDWYP 185 (186)
Q Consensus 151 ~~e~eC~IClE~~~~~-------Vl~~CGH~FC~~Cl~~W~~ 185 (186)
+++.+|+||++....+ +.++|||.||..|+..|..
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~ 111 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK 111 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHH
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHH
Confidence 4678999999987664 7889999999999999963
No 56
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.19 E-value=4.5e-07 Score=78.76 Aligned_cols=35 Identities=11% Similarity=0.297 Sum_probs=31.4
Q ss_pred CCcccccccccccCCCcc-cCCCCcccHHHHhcccC
Q 029884 151 DRNDECGICMENCTKMVL-PNCGHSLCVNCFHDWYP 185 (186)
Q Consensus 151 ~~e~eC~IClE~~~~~Vl-~~CGH~FC~~Cl~~W~~ 185 (186)
..++.||||++.+.+||. ..|||+||..||..|..
T Consensus 179 ~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~ 214 (267)
T 3htk_C 179 KIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQ 214 (267)
T ss_dssp BCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHST
T ss_pred ceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHH
Confidence 467899999999999997 49999999999999864
No 57
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.17 E-value=3.5e-07 Score=64.81 Aligned_cols=33 Identities=24% Similarity=0.564 Sum_probs=29.7
Q ss_pred CcccccccccccCCCcccCCCCc-ccHHHHhccc
Q 029884 152 RNDECGICMENCTKMVLPNCGHS-LCVNCFHDWY 184 (186)
Q Consensus 152 ~e~eC~IClE~~~~~Vl~~CGH~-FC~~Cl~~W~ 184 (186)
++.+|.||++...++|+.+|||. ||..|+..|.
T Consensus 17 ~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~ 50 (79)
T 2yho_A 17 EAMLCMVCCEEEINSTFCPCGHTVCCESCAAQLQ 50 (79)
T ss_dssp HHTBCTTTSSSBCCEEEETTCBCCBCHHHHTTCS
T ss_pred CCCEeEEeCcccCcEEEECCCCHHHHHHHHHhcC
Confidence 35689999999999999999999 9999998873
No 58
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.13 E-value=3.1e-07 Score=62.45 Aligned_cols=34 Identities=21% Similarity=0.469 Sum_probs=29.8
Q ss_pred CCcccccccccccCCCccc--CCCCc-ccHHHHhccc
Q 029884 151 DRNDECGICMENCTKMVLP--NCGHS-LCVNCFHDWY 184 (186)
Q Consensus 151 ~~e~eC~IClE~~~~~Vl~--~CGH~-FC~~Cl~~W~ 184 (186)
+++.+|.||++...++++. +|||. ||..|+..|.
T Consensus 6 ~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~ 42 (64)
T 2vje_A 6 NAIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLK 42 (64)
T ss_dssp GGGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHH
T ss_pred CCcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHH
Confidence 4567999999999988876 89999 8999999885
No 59
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.12 E-value=1.1e-06 Score=60.68 Aligned_cols=33 Identities=27% Similarity=0.720 Sum_probs=29.3
Q ss_pred CCCcccccccccccCCCcccCCCCc-ccHHHHhc
Q 029884 150 LDRNDECGICMENCTKMVLPNCGHS-LCVNCFHD 182 (186)
Q Consensus 150 ~~~e~eC~IClE~~~~~Vl~~CGH~-FC~~Cl~~ 182 (186)
.+++.+|.||++...++|+.+|||. ||..|+..
T Consensus 12 ~~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~ 45 (68)
T 2ea5_A 12 EENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKY 45 (68)
T ss_dssp CCCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHH
T ss_pred CCCCCCCCCcCcCCCCEEEECCCChhhhHHHHhc
Confidence 3457899999999999999999999 99999874
No 60
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=97.99 E-value=2e-06 Score=64.57 Aligned_cols=34 Identities=24% Similarity=0.717 Sum_probs=28.0
Q ss_pred CcccccccccccCCC------------------cccCCCCcccHHHHhcccC
Q 029884 152 RNDECGICMENCTKM------------------VLPNCGHSLCVNCFHDWYP 185 (186)
Q Consensus 152 ~e~eC~IClE~~~~~------------------Vl~~CGH~FC~~Cl~~W~~ 185 (186)
++..|+||++.+..+ ++++|||.|+..||..|..
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~ 87 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLK 87 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHT
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHH
Confidence 467899999876543 4578999999999999975
No 61
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=97.97 E-value=7.3e-07 Score=60.43 Aligned_cols=33 Identities=18% Similarity=0.412 Sum_probs=28.5
Q ss_pred CcccccccccccCCCccc--CCCCc-ccHHHHhccc
Q 029884 152 RNDECGICMENCTKMVLP--NCGHS-LCVNCFHDWY 184 (186)
Q Consensus 152 ~e~eC~IClE~~~~~Vl~--~CGH~-FC~~Cl~~W~ 184 (186)
.+.+|.||++...++++. +|||. ||..|...|.
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~ 41 (63)
T 2vje_B 6 LLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLK 41 (63)
T ss_dssp GGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHH
T ss_pred cCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHH
Confidence 467999999998887765 89998 9999999875
No 62
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=97.90 E-value=2.5e-06 Score=75.74 Aligned_cols=34 Identities=26% Similarity=0.745 Sum_probs=30.8
Q ss_pred CCcccccccccccCCCcccCCCCc-ccHHHHhccc
Q 029884 151 DRNDECGICMENCTKMVLPNCGHS-LCVNCFHDWY 184 (186)
Q Consensus 151 ~~e~eC~IClE~~~~~Vl~~CGH~-FC~~Cl~~W~ 184 (186)
+++..|+||++...++|+++|||. ||..|+..|.
T Consensus 293 ~~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~~ 327 (345)
T 3t6p_A 293 QEERTCKVCMDKEVSVVFIPCGHLVVCQECAPSLR 327 (345)
T ss_dssp HTTCBCTTTSSSBCCEEEETTCCEEECTTTGGGCS
T ss_pred cCCCCCCccCCcCCceEEcCCCChhHhHHHHhcCC
Confidence 356899999999999999999999 9999999883
No 63
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=97.87 E-value=1.8e-06 Score=58.73 Aligned_cols=33 Identities=12% Similarity=0.123 Sum_probs=29.9
Q ss_pred cccccccccccCCCccc-CCCCcccHHHHhcccC
Q 029884 153 NDECGICMENCTKMVLP-NCGHSLCVNCFHDWYP 185 (186)
Q Consensus 153 e~eC~IClE~~~~~Vl~-~CGH~FC~~Cl~~W~~ 185 (186)
.+.|+||.+++.+||+. .|||+||++||.+|..
T Consensus 3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~ 36 (61)
T 2bay_A 3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVK 36 (61)
T ss_dssp -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHH
T ss_pred eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHH
Confidence 47899999999999988 8999999999999964
No 64
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=97.68 E-value=6.1e-06 Score=63.27 Aligned_cols=34 Identities=24% Similarity=0.705 Sum_probs=1.0
Q ss_pred CcccccccccccCC------------------CcccCCCCcccHHHHhcccC
Q 029884 152 RNDECGICMENCTK------------------MVLPNCGHSLCVNCFHDWYP 185 (186)
Q Consensus 152 ~e~eC~IClE~~~~------------------~Vl~~CGH~FC~~Cl~~W~~ 185 (186)
.+..|+||++.+.. .+.++|||.|+..||..|..
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~ 98 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLK 98 (117)
T ss_dssp CC--------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHH
Confidence 45799999987653 23468999999999999975
No 65
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=97.34 E-value=8.3e-05 Score=53.60 Aligned_cols=33 Identities=21% Similarity=0.506 Sum_probs=27.6
Q ss_pred Ccccccccccc-cCCCcc--cCCCCcccHHHHhc-cc
Q 029884 152 RNDECGICMEN-CTKMVL--PNCGHSLCVNCFHD-WY 184 (186)
Q Consensus 152 ~e~eC~IClE~-~~~~Vl--~~CGH~FC~~Cl~~-W~ 184 (186)
++..|+||.+. ..++|. ..|||+||..|+.. |.
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~ 38 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHP 38 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSC
T ss_pred CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhc
Confidence 46789999975 677877 88999999999997 54
No 66
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=97.05 E-value=0.00013 Score=53.61 Aligned_cols=21 Identities=33% Similarity=0.855 Sum_probs=17.9
Q ss_pred CCcccCCCCcccHHHHhcccC
Q 029884 165 KMVLPNCGHSLCVNCFHDWYP 185 (186)
Q Consensus 165 ~~Vl~~CGH~FC~~Cl~~W~~ 185 (186)
.++.++|||+||..||.+|..
T Consensus 26 ~~~~~~CgH~fc~~Ci~~~~~ 46 (133)
T 4ap4_A 26 LIVSTECGHVFCSQCLRDSLK 46 (133)
T ss_dssp CEEEETTCCEEEHHHHHHHHT
T ss_pred CeEecCCCChhhHHHHHHHHH
Confidence 346788999999999999964
No 67
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.04 E-value=0.00025 Score=50.47 Aligned_cols=35 Identities=23% Similarity=0.624 Sum_probs=27.5
Q ss_pred CCccccccccccc--CCCcccCCC-----CcccHHHHhcccC
Q 029884 151 DRNDECGICMENC--TKMVLPNCG-----HSLCVNCFHDWYP 185 (186)
Q Consensus 151 ~~e~eC~IClE~~--~~~Vl~~CG-----H~FC~~Cl~~W~~ 185 (186)
.++..|.||++.. ..+++.+|+ |.|...||.+|..
T Consensus 13 ~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~ 54 (80)
T 2d8s_A 13 SSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIK 54 (80)
T ss_dssp TTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHH
T ss_pred CCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHh
Confidence 4567999999654 345667796 9999999999963
No 68
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=96.13 E-value=0.002 Score=58.26 Aligned_cols=34 Identities=18% Similarity=0.509 Sum_probs=26.6
Q ss_pred CcccccccccccCC-Cc-------ccCCCCcccHHHHhcccC
Q 029884 152 RNDECGICMENCTK-MV-------LPNCGHSLCVNCFHDWYP 185 (186)
Q Consensus 152 ~e~eC~IClE~~~~-~V-------l~~CGH~FC~~Cl~~W~~ 185 (186)
...+|+||++...+ .- .++|||.|...|+.+|..
T Consensus 307 ~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLr 348 (381)
T 3k1l_B 307 EELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFK 348 (381)
T ss_dssp SCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHH
T ss_pred CCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHH
Confidence 45699999987554 22 247999999999999963
No 69
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.99 E-value=0.0038 Score=44.17 Aligned_cols=34 Identities=18% Similarity=0.492 Sum_probs=27.6
Q ss_pred CcccccccccccCCC-cccCCCCcccHHHHhcccC
Q 029884 152 RNDECGICMENCTKM-VLPNCGHSLCVNCFHDWYP 185 (186)
Q Consensus 152 ~e~eC~IClE~~~~~-Vl~~CGH~FC~~Cl~~W~~ 185 (186)
...+|.||.+....- .-+.|+|.|-..||..|++
T Consensus 14 ~i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~ 48 (74)
T 2ct0_A 14 AVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQ 48 (74)
T ss_dssp SSCBCSSSCCBCSSSEECSSSCCEECHHHHHHHST
T ss_pred CCCcCcchhhHcccCCccCCCCchhhHHHHHHHHH
Confidence 457999999886543 3458999999999999975
No 70
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=94.84 E-value=0.016 Score=38.87 Aligned_cols=36 Identities=22% Similarity=0.542 Sum_probs=27.3
Q ss_pred CCCcccccccccccCCCcccCCC--C---cccHHHHhcccC
Q 029884 150 LDRNDECGICMENCTKMVLPNCG--H---SLCVNCFHDWYP 185 (186)
Q Consensus 150 ~~~e~eC~IClE~~~~~Vl~~CG--H---~FC~~Cl~~W~~ 185 (186)
.+++..|.||++....+.+.+|. | .|-..|+.+|..
T Consensus 3 ~~~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~ 43 (60)
T 1vyx_A 3 DEDVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLT 43 (60)
T ss_dssp TCSCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHH
T ss_pred CCCCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHH
Confidence 35677999999765555566654 4 899999999963
No 71
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=94.07 E-value=0.012 Score=44.39 Aligned_cols=30 Identities=20% Similarity=0.340 Sum_probs=22.6
Q ss_pred cccccccccCC-CcccCCCCcccHHHHhccc
Q 029884 155 ECGICMENCTK-MVLPNCGHSLCVNCFHDWY 184 (186)
Q Consensus 155 eC~IClE~~~~-~Vl~~CGH~FC~~Cl~~W~ 184 (186)
-|++|--+... .-+.+|+|+||..|+..|.
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~ 33 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHE 33 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEEEHHHHHHHH
T ss_pred ecCccCCCeEEEeeeccccccHHHHHHHHHH
Confidence 48888665443 3356699999999999885
No 72
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=88.62 E-value=0.088 Score=37.11 Aligned_cols=16 Identities=25% Similarity=0.866 Sum_probs=14.6
Q ss_pred CCCCcccHHHHhcccC
Q 029884 170 NCGHSLCVNCFHDWYP 185 (186)
Q Consensus 170 ~CGH~FC~~Cl~~W~~ 185 (186)
.|||.||..|-..|..
T Consensus 55 ~C~~~FC~~C~~~wH~ 70 (80)
T 2jmo_A 55 GCGFAFCRECKEAYHE 70 (80)
T ss_dssp CCSCCEETTTTEECCS
T ss_pred CCCCeeccccCccccC
Confidence 7999999999999963
No 73
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=86.16 E-value=0.2 Score=33.85 Aligned_cols=33 Identities=30% Similarity=0.721 Sum_probs=23.1
Q ss_pred CcccccccccccC------CCcccC--CCCcccHHHHhccc
Q 029884 152 RNDECGICMENCT------KMVLPN--CGHSLCVNCFHDWY 184 (186)
Q Consensus 152 ~e~eC~IClE~~~------~~Vl~~--CGH~FC~~Cl~~W~ 184 (186)
+...||-|.-+.. .+.-.+ |||.||+.|...|.
T Consensus 5 ~~k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~ 45 (60)
T 1wd2_A 5 NTKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWE 45 (60)
T ss_dssp CCCCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSG
T ss_pred cceECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCcc
Confidence 3457887764432 344455 99999999999885
No 74
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=84.17 E-value=0.79 Score=34.81 Aligned_cols=37 Identities=16% Similarity=0.427 Sum_probs=26.3
Q ss_pred CccCCCCcccccccccccCCC----cccCCCCcccHHHHhc
Q 029884 146 SDKDLDRNDECGICMENCTKM----VLPNCGHSLCVNCFHD 182 (186)
Q Consensus 146 ~~~d~~~e~eC~IClE~~~~~----Vl~~CGH~FC~~Cl~~ 182 (186)
..++......|.+|...++.. ---.||+.||..|...
T Consensus 62 ~W~~d~~~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~ 102 (125)
T 1joc_A 62 KWAEDNEVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAK 102 (125)
T ss_dssp CCCCGGGCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred ccccCCCCCCCcCcCCccccccccccCCCCCeEEChHHhCC
Confidence 444444556899998876632 2357999999999764
No 75
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=81.14 E-value=0.69 Score=38.67 Aligned_cols=34 Identities=18% Similarity=0.492 Sum_probs=27.5
Q ss_pred CcccccccccccCCC-cccCCCCcccHHHHhcccC
Q 029884 152 RNDECGICMENCTKM-VLPNCGHSLCVNCFHDWYP 185 (186)
Q Consensus 152 ~e~eC~IClE~~~~~-Vl~~CGH~FC~~Cl~~W~~ 185 (186)
.-.+|.||.++.... .-++|+|.|-..|+..|.+
T Consensus 179 ~i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~ 213 (238)
T 3nw0_A 179 AVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQ 213 (238)
T ss_dssp TCCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTT
T ss_pred CCCcCcchhhHHhCCcccCccChHHHHHHHHHHHH
Confidence 356899999986653 3567999999999999963
No 76
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=77.61 E-value=1.3 Score=31.07 Aligned_cols=36 Identities=25% Similarity=0.519 Sum_probs=25.1
Q ss_pred ccCCCCcccccccccccCCC----cccCCCCcccHHHHhc
Q 029884 147 DKDLDRNDECGICMENCTKM----VLPNCGHSLCVNCFHD 182 (186)
Q Consensus 147 ~~d~~~e~eC~IClE~~~~~----Vl~~CGH~FC~~Cl~~ 182 (186)
.++..+...|.+|...++.. ---.||+.||..|...
T Consensus 13 W~~d~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 52 (82)
T 2yw8_A 13 WLKDDEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSN 52 (82)
T ss_dssp --CCCCCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCE
T ss_pred cccCccCCcccCcCCcccCccccccCCCCCCEEChHHhCC
Confidence 44445567899998876532 2357999999999764
No 77
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=77.24 E-value=0.41 Score=33.87 Aligned_cols=29 Identities=28% Similarity=0.822 Sum_probs=20.2
Q ss_pred ccccccccc------CCCcccCCCCcccHHHHhcc
Q 029884 155 ECGICMENC------TKMVLPNCGHSLCVNCFHDW 183 (186)
Q Consensus 155 eC~IClE~~------~~~Vl~~CGH~FC~~Cl~~W 183 (186)
-||=|-... ..+.-+.|||.||..|-..|
T Consensus 27 wCP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~~w 61 (86)
T 2ct7_A 27 WCAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQW 61 (86)
T ss_dssp CCSSSCCCEECCCSCSCEECTTTCCEECSSSCSBC
T ss_pred ECcCCCchheecCCCCceEeCCCCCccccccCCch
Confidence 377665421 12334679999999999999
No 78
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=76.32 E-value=1.3 Score=31.16 Aligned_cols=37 Identities=27% Similarity=0.449 Sum_probs=26.6
Q ss_pred CccCCCCcccccccccccCCCc----ccCCCCcccHHHHhc
Q 029884 146 SDKDLDRNDECGICMENCTKMV----LPNCGHSLCVNCFHD 182 (186)
Q Consensus 146 ~~~d~~~e~eC~IClE~~~~~V----l~~CGH~FC~~Cl~~ 182 (186)
..++..+...|.+|...++... --.||+.||..|...
T Consensus 14 ~W~pd~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 54 (84)
T 1z2q_A 14 YWQEDEDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRH 54 (84)
T ss_dssp CCCCTTTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCC
T ss_pred ccccCCCCCCCcCcCCccccchhcccccCCCcEEChHHhCC
Confidence 3444456679999988765322 356999999999765
No 79
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=76.23 E-value=1.3 Score=31.73 Aligned_cols=33 Identities=21% Similarity=0.421 Sum_probs=24.2
Q ss_pred CCcccccccccccCC----CcccCCCCcccHHHHhcc
Q 029884 151 DRNDECGICMENCTK----MVLPNCGHSLCVNCFHDW 183 (186)
Q Consensus 151 ~~e~eC~IClE~~~~----~Vl~~CGH~FC~~Cl~~W 183 (186)
.+...|.+|...+.- ----+||+.||..|...+
T Consensus 18 ~~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~ 54 (90)
T 3t7l_A 18 SEAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRK 54 (90)
T ss_dssp GGCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred ccCCcCcCCCCcccchhhCccccCCCCEECCcccCCe
Confidence 345689999876652 224679999999997654
No 80
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=74.07 E-value=1.3 Score=32.60 Aligned_cols=34 Identities=24% Similarity=0.549 Sum_probs=25.8
Q ss_pred CCcccccccccccCCCcccCC----CCcccHHHHhccc
Q 029884 151 DRNDECGICMENCTKMVLPNC----GHSLCVNCFHDWY 184 (186)
Q Consensus 151 ~~e~eC~IClE~~~~~Vl~~C----GH~FC~~Cl~~W~ 184 (186)
.....|.+|.|-.++.-..+| +|.||..|-++..
T Consensus 13 ~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sI 50 (93)
T 2cs3_A 13 SGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESI 50 (93)
T ss_dssp CCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHH
T ss_pred CCeeEeecchhhhccCceeeCCCccCCeeeccccHHHH
Confidence 456799999987666444444 8999999988754
No 81
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=71.89 E-value=2.4 Score=29.76 Aligned_cols=37 Identities=22% Similarity=0.505 Sum_probs=26.0
Q ss_pred CccCCCCcccccccccccCCCc----ccCCCCcccHHHHhc
Q 029884 146 SDKDLDRNDECGICMENCTKMV----LPNCGHSLCVNCFHD 182 (186)
Q Consensus 146 ~~~d~~~e~eC~IClE~~~~~V----l~~CGH~FC~~Cl~~ 182 (186)
..++..+...|.+|...++... --.||..||..|...
T Consensus 7 ~W~pd~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 47 (84)
T 1x4u_A 7 GRYPTNNFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSF 47 (84)
T ss_dssp CSCSCCCCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCE
T ss_pred ccccCCCCCcCcCcCCccccchhhhhhcCCCcEEChhhcCC
Confidence 3444455678999987765322 356999999999754
No 82
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=69.13 E-value=1.2 Score=33.68 Aligned_cols=12 Identities=42% Similarity=1.450 Sum_probs=10.5
Q ss_pred cccHHHHhcccC
Q 029884 174 SLCVNCFHDWYP 185 (186)
Q Consensus 174 ~FC~~Cl~~W~~ 185 (186)
.||++|+.+|+.
T Consensus 42 GFCRNCLskWy~ 53 (105)
T 2o35_A 42 GFCRNCLSNWYR 53 (105)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 599999999973
No 83
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=68.66 E-value=1.2 Score=33.54 Aligned_cols=12 Identities=33% Similarity=1.132 Sum_probs=10.5
Q ss_pred cccHHHHhcccC
Q 029884 174 SLCVNCFHDWYP 185 (186)
Q Consensus 174 ~FC~~Cl~~W~~ 185 (186)
.||++|+.+|+.
T Consensus 41 GFCRNCLskWy~ 52 (104)
T 3fyb_A 41 DFCRNCLAKWLM 52 (104)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 599999999974
No 84
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=67.91 E-value=2.3 Score=42.55 Aligned_cols=37 Identities=5% Similarity=-0.087 Sum_probs=32.6
Q ss_pred CCCCcccccccccccCCCcccCCC-CcccHHHHhcccC
Q 029884 149 DLDRNDECGICMENCTKMVLPNCG-HSLCVNCFHDWYP 185 (186)
Q Consensus 149 d~~~e~eC~IClE~~~~~Vl~~CG-H~FC~~Cl~~W~~ 185 (186)
+.-+++.|||-.++..+||+++-| +++=+.+|++|..
T Consensus 887 ~iP~~F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl~ 924 (968)
T 3m62_A 887 DVPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLL 924 (968)
T ss_dssp CSCGGGBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHT
T ss_pred CCcHHhCCcchhhHHhCCeEcCCCCEEECHHHHHHHHh
Confidence 344789999999999999998887 6999999999964
No 85
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=66.32 E-value=3.8 Score=31.61 Aligned_cols=31 Identities=26% Similarity=0.637 Sum_probs=24.3
Q ss_pred CCcccccccccccC-----CCcccCCCCcccHHHHh
Q 029884 151 DRNDECGICMENCT-----KMVLPNCGHSLCVNCFH 181 (186)
Q Consensus 151 ~~e~eC~IClE~~~-----~~Vl~~CGH~FC~~Cl~ 181 (186)
..+..|.+|...+. ..+-..|.|.+|.+|=.
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~ 88 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGV 88 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEE
T ss_pred CCCccccccCCCcccccCCCCCCCCCCcccccccCC
Confidence 46789999998763 34567899999999954
No 86
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=63.81 E-value=3.9 Score=27.88 Aligned_cols=29 Identities=24% Similarity=0.612 Sum_probs=21.8
Q ss_pred ccccccccccCCC----cccCCCCcccHHHHhc
Q 029884 154 DECGICMENCTKM----VLPNCGHSLCVNCFHD 182 (186)
Q Consensus 154 ~eC~IClE~~~~~----Vl~~CGH~FC~~Cl~~ 182 (186)
..|.+|...++.. ---.||+.||..|...
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~ 44 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSSN 44 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSCE
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccccCC
Confidence 5899998776532 1356999999999754
No 87
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=62.28 E-value=3.3 Score=33.97 Aligned_cols=32 Identities=25% Similarity=0.621 Sum_probs=23.7
Q ss_pred CcccccccccccCCC----cccCCCCcccHHHHhcc
Q 029884 152 RNDECGICMENCTKM----VLPNCGHSLCVNCFHDW 183 (186)
Q Consensus 152 ~e~eC~IClE~~~~~----Vl~~CGH~FC~~Cl~~W 183 (186)
+...|.+|...++-. ---+||+.||..|-...
T Consensus 163 ~~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~ 198 (226)
T 3zyq_A 163 DAEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKY 198 (226)
T ss_dssp CCSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEE
T ss_pred cCCCCcCcCCCCCccccccccCCCcCEeChhhcCCc
Confidence 346999998776532 24679999999997643
No 88
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=62.21 E-value=3.1 Score=33.73 Aligned_cols=31 Identities=26% Similarity=0.534 Sum_probs=23.0
Q ss_pred CcccccccccccCCCc----ccCCCCcccHHHHhc
Q 029884 152 RNDECGICMENCTKMV----LPNCGHSLCVNCFHD 182 (186)
Q Consensus 152 ~e~eC~IClE~~~~~V----l~~CGH~FC~~Cl~~ 182 (186)
+...|.+|...++-.. --.||+.||..|...
T Consensus 160 ~~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~ 194 (220)
T 1dvp_A 160 DGRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAK 194 (220)
T ss_dssp CCSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCE
T ss_pred CCCccCCCCCccCCcccccccCCcCCEEChHHhCC
Confidence 3479999987765321 356999999999764
No 89
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=60.93 E-value=5.3 Score=28.45 Aligned_cols=31 Identities=26% Similarity=0.584 Sum_probs=23.0
Q ss_pred CcccccccccccCCCc----ccCCCCcccHHHHhc
Q 029884 152 RNDECGICMENCTKMV----LPNCGHSLCVNCFHD 182 (186)
Q Consensus 152 ~e~eC~IClE~~~~~V----l~~CGH~FC~~Cl~~ 182 (186)
+...|.+|...++... --.||+.||..|...
T Consensus 8 ~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 42 (88)
T 1wfk_A 8 MESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSF 42 (88)
T ss_dssp CCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCE
T ss_pred cCCCCcCcCCcccCccccccCCCCCCEEChhHcCC
Confidence 4458999987765322 356999999999764
No 90
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=60.72 E-value=4.9 Score=31.67 Aligned_cols=30 Identities=17% Similarity=0.537 Sum_probs=24.4
Q ss_pred CCccccccccccc-----CCCcccCCCCcccHHHH
Q 029884 151 DRNDECGICMENC-----TKMVLPNCGHSLCVNCF 180 (186)
Q Consensus 151 ~~e~eC~IClE~~-----~~~Vl~~CGH~FC~~Cl 180 (186)
.++..|.+|..++ ...+-..|.|.+|.+|=
T Consensus 66 ~~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~ 100 (153)
T 2zet_C 66 LNETHCARCLQPYRLLLNSRRQCLECSLFVCKSCS 100 (153)
T ss_dssp GGGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGE
T ss_pred CCCccchhhcCccccccCCCCcCCCCCchhhcccc
Confidence 4678999999874 34557889999999996
No 91
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=60.34 E-value=4.8 Score=36.35 Aligned_cols=35 Identities=20% Similarity=0.562 Sum_probs=26.4
Q ss_pred CCcccccccccccCCCccc--CCCCcccHHHHhcccC
Q 029884 151 DRNDECGICMENCTKMVLP--NCGHSLCVNCFHDWYP 185 (186)
Q Consensus 151 ~~e~eC~IClE~~~~~Vl~--~CGH~FC~~Cl~~W~~ 185 (186)
.-+..|.||-+-.+-..-. +|...||.+||.....
T Consensus 91 G~~~yCr~C~~Gg~l~~Cdn~~C~r~FC~~Ci~~n~g 127 (386)
T 2pv0_B 91 GYQSYCSICCSGETLLICGNPDCTRCYCFECVDSLVG 127 (386)
T ss_dssp SSBCSCTTTCCCSSCEECCSTTCCCEECHHHHHHHTC
T ss_pred CCcccceEcCCCCeEEEeCCCCCCcchHHHHHHHhcC
Confidence 3567999998765443334 7999999999987654
No 92
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=58.93 E-value=4.3 Score=30.87 Aligned_cols=32 Identities=16% Similarity=0.536 Sum_probs=22.1
Q ss_pred CCcccccccccccCCC----cccCCCCcccHHHHhc
Q 029884 151 DRNDECGICMENCTKM----VLPNCGHSLCVNCFHD 182 (186)
Q Consensus 151 ~~e~eC~IClE~~~~~----Vl~~CGH~FC~~Cl~~ 182 (186)
.....|..|...++.. ---+||..||.+|...
T Consensus 17 ~~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~ 52 (120)
T 1y02_A 17 GLEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQ 52 (120)
T ss_dssp ---CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC
T ss_pred cccCcccCcCCccccccccccCCCCCCeeCHHHhCC
Confidence 3456899998776532 2467999999999654
No 93
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=58.74 E-value=4.5 Score=32.43 Aligned_cols=35 Identities=23% Similarity=0.532 Sum_probs=25.5
Q ss_pred CCcccccccccccCCCcc--cCCCCcccHHHHhcccC
Q 029884 151 DRNDECGICMENCTKMVL--PNCGHSLCVNCFHDWYP 185 (186)
Q Consensus 151 ~~e~eC~IClE~~~~~Vl--~~CGH~FC~~Cl~~W~~ 185 (186)
.-+..|.||-+-..-..- ++|...||.+||.....
T Consensus 77 G~~~yC~wC~~Gg~l~~Cdn~~C~r~FC~~CI~~nvG 113 (159)
T 3a1b_A 77 GYQSYCTICCGGREVLMCGNNNCCRCFCVECVDLLVG 113 (159)
T ss_dssp SSBSSCTTTSCCSEEEECSSTTTCCEEEHHHHHHHTC
T ss_pred CCcceeeEecCCCeEEeeCCCCCCCchhHHHHHHhcC
Confidence 356799999875433322 36999999999987654
No 94
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=53.50 E-value=2.8 Score=36.43 Aligned_cols=33 Identities=21% Similarity=0.387 Sum_probs=0.0
Q ss_pred CCcccccccccccCC----CcccCCCCcccHHHHhcc
Q 029884 151 DRNDECGICMENCTK----MVLPNCGHSLCVNCFHDW 183 (186)
Q Consensus 151 ~~e~eC~IClE~~~~----~Vl~~CGH~FC~~Cl~~W 183 (186)
.....|.+|...++- ----+||+.||..|-...
T Consensus 373 ~~~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~ 409 (434)
T 3mpx_A 373 THVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNK 409 (434)
T ss_dssp -------------------------------------
T ss_pred ccCCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCe
Confidence 345689999876542 224679999999998653
No 95
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=46.87 E-value=11 Score=25.28 Aligned_cols=27 Identities=26% Similarity=0.547 Sum_probs=20.1
Q ss_pred ccccccccccCCC---cccCCCCcccHHHH
Q 029884 154 DECGICMENCTKM---VLPNCGHSLCVNCF 180 (186)
Q Consensus 154 ~eC~IClE~~~~~---Vl~~CGH~FC~~Cl 180 (186)
..|--|.....+. .-++|++.||..|=
T Consensus 16 ~~C~~C~~~~~~~~~y~C~~C~~~FC~dCD 45 (59)
T 1z60_A 16 RFCYGCQGELKDQHVYVCAVCQNVFCVDCD 45 (59)
T ss_dssp CEETTTTEECTTSEEECCTTTTCCBCHHHH
T ss_pred CcccccCcccCCCccEECCccCcCcccchh
Confidence 4588888665432 26899999999993
No 96
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=33.22 E-value=19 Score=27.62 Aligned_cols=33 Identities=18% Similarity=0.540 Sum_probs=24.6
Q ss_pred CCCcccccccccccCCCcccCCCCcccHHHHhc
Q 029884 150 LDRNDECGICMENCTKMVLPNCGHSLCVNCFHD 182 (186)
Q Consensus 150 ~~~e~eC~IClE~~~~~Vl~~CGH~FC~~Cl~~ 182 (186)
...+..|.||-+--.-..--.|-.+||.+|+..
T Consensus 54 Dg~~~~C~vC~dGG~LlcCd~Cpr~Fc~~Cl~~ 86 (129)
T 3ql9_A 54 DGMDEQCRWCAEGGNLICCDFCHNAFCKKCILR 86 (129)
T ss_dssp TSCBSSCTTTCCCSEEEECSSSSCEEEHHHHHH
T ss_pred CCCCCcCeecCCCCeeEecCCCchhhhHHHhCC
Confidence 346678999987644333457999999999973
No 97
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=30.01 E-value=11 Score=22.78 Aligned_cols=12 Identities=25% Similarity=0.459 Sum_probs=9.3
Q ss_pred cccccccccccC
Q 029884 153 NDECGICMENCT 164 (186)
Q Consensus 153 e~eC~IClE~~~ 164 (186)
-+.|||||....
T Consensus 5 GFiCP~C~~~l~ 16 (34)
T 3mjh_B 5 GFICPQCMKSLG 16 (34)
T ss_dssp EEECTTTCCEES
T ss_pred ccCCcHHHHHcC
Confidence 489999996544
No 98
>1q9u_A Uncharacterized protein APC35924; structural genomics, Zn-binding proteins, PSI, protein structure initiative; HET: CSW CME; 1.80A {Geobacillus stearothermophilus} SCOP: d.129.7.1
Probab=29.61 E-value=34 Score=24.89 Aligned_cols=85 Identities=12% Similarity=0.171 Sum_probs=49.7
Q ss_pred CcchHHHHHHHHHhhHHHH-----------HhhhhCCCCCCC-ceEEEeeccCCchhHHHHHHHHhhcCCCCCccccccc
Q 029884 8 KSSYRESLKALEADIQHAN-----------TLAAALPRDYGG-DFVQMRLSYSPFAPLVLFMIEWMDYSCTDTVPSYLGL 75 (186)
Q Consensus 8 ~~~~~~slk~leadiq~an-----------~la~~~pr~~~g-~~~qm~l~y~~~a~~~lfl~qw~d~~~~~~l~~~lgl 75 (186)
..||.|..+.||+-+...| ++.+. +.+= .-++.=..+||...-- -+..+ + -+|++==
T Consensus 12 ~~s~~e~~~~l~~al~~~Gf~v~~~~d~~~~~~~~---G~~~~~~~~il~~cnp~~a~~-----~l~~~--p-~~g~~lP 80 (130)
T 1q9u_A 12 STGMNETIERLEESLKQEGFGVLWQFSVTEKLQEK---GLDFSTPMVILEVCNPQEAAR-----VLNEN--L-LVGYFLP 80 (130)
T ss_dssp SSCHHHHHHHHHHHHHHTTCEEEEEEEHHHHHHHT---TCCCCSCEEEEEEECHHHHHH-----HHHHC--G-GGGGGCS
T ss_pred CCCHHHHHHHHHHHHHHCCCEEEEEECHHHHHHhc---CCCCCCCCEEEEEeCHHHHHH-----HHHhC--H-HHHhhcC
Confidence 4599999999998766444 33222 2211 2356667778765532 22222 2 2333333
Q ss_pred eeEEEEEEeeCCCccccchhhhhHHHHHhhh
Q 029884 76 LNILVYKVYVDGMPALSSKERKATLREFYAI 106 (186)
Q Consensus 76 ~~iliykvy~DGk~~~s~~~Rkati~efYa~ 106 (186)
+||+||+ .||++.++ +-+-..+.+-|+.
T Consensus 81 crv~v~e--~~g~~~v~-~~~p~~~~~~~~~ 108 (130)
T 1q9u_A 81 CKLVVYQ--ENGTTKIG-MPKPTMLVGMMND 108 (130)
T ss_dssp EEEEEEE--ETTEEEEE-EECHHHHHHTTTC
T ss_pred eEEEEEE--cCCEEEEE-EeCHHHHHHhcCC
Confidence 6999998 59988777 5555556555553
No 99
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=29.47 E-value=28 Score=27.08 Aligned_cols=32 Identities=19% Similarity=0.560 Sum_probs=25.2
Q ss_pred CCCcccccccccccCCCcccCCCCcccHHHHh
Q 029884 150 LDRNDECGICMENCTKMVLPNCGHSLCVNCFH 181 (186)
Q Consensus 150 ~~~e~eC~IClE~~~~~Vl~~CGH~FC~~Cl~ 181 (186)
...+..|.+|.+--.-..--.|--+||..|+.
T Consensus 60 Dg~~d~C~vC~~GG~LlcCD~Cpr~Fh~~Cl~ 91 (142)
T 2lbm_A 60 DGMDEQCRWCAEGGNLICCDFCHNAFCKKCIL 91 (142)
T ss_dssp TSCBCSCSSSCCCSSEEECSSSCCEEEHHHHH
T ss_pred CCCCCeecccCCCCcEEeCCCCCCeeeHhhcC
Confidence 35678999999765544445799999999997
No 100
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=27.82 E-value=18 Score=25.16 Aligned_cols=32 Identities=31% Similarity=0.673 Sum_probs=23.8
Q ss_pred CCcccccccccccCCCcccCC-CCcccHHHHhcc
Q 029884 151 DRNDECGICMENCTKMVLPNC-GHSLCVNCFHDW 183 (186)
Q Consensus 151 ~~e~eC~IClE~~~~~Vl~~C-GH~FC~~Cl~~W 183 (186)
++..-|.||.|-.+-. -..| |-.||..|.++-
T Consensus 6 ee~pWC~ICneDAtlr-C~gCdgDLYC~rC~rE~ 38 (67)
T 2d8v_A 6 SGLPWCCICNEDATLR-CAGCDGDLYCARCFREG 38 (67)
T ss_dssp CCCSSCTTTCSCCCEE-ETTTTSEEECSSHHHHH
T ss_pred cCCCeeEEeCCCCeEE-ecCCCCceehHHHHHHH
Confidence 3445899998874433 3668 999999999864
No 101
>3c5k_A HD6, histone deacetylase 6; HDAC6, zinc finger, actin-binding, chromatin regulator, cytoplasm, hydrolase, metal-binding, nucleus, phosphoprotein; 1.55A {Homo sapiens} PDB: 3gv4_A 3phd_A
Probab=25.80 E-value=32 Score=25.38 Aligned_cols=25 Identities=24% Similarity=0.454 Sum_probs=19.8
Q ss_pred cccccccccccCCCcccCCCCcccH
Q 029884 153 NDECGICMENCTKMVLPNCGHSLCV 177 (186)
Q Consensus 153 e~eC~IClE~~~~~Vl~~CGH~FC~ 177 (186)
+..|..|.......+-..|||.+|.
T Consensus 24 ~~~C~~C~~~~~~W~CL~CG~vgCg 48 (109)
T 3c5k_A 24 TQPCGDCGTIQENWVCLSCYQVYCG 48 (109)
T ss_dssp TCCCTTTCCCSSEEEETTTCCEEEC
T ss_pred CCcCccccCCCCeeeeeecCccccC
Confidence 4579999877666677779999984
No 102
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=25.80 E-value=45 Score=21.71 Aligned_cols=35 Identities=17% Similarity=0.536 Sum_probs=20.5
Q ss_pred ccCCCCcccccccccccCCCcccCCCCcccHHHHh
Q 029884 147 DKDLDRNDECGICMENCTKMVLPNCGHSLCVNCFH 181 (186)
Q Consensus 147 ~~d~~~e~eC~IClE~~~~~Vl~~CGH~FC~~Cl~ 181 (186)
..+..++..|.||.+...-..--.|.-.|-..|+.
T Consensus 5 ~~~~~~~~~C~vC~~~g~ll~CD~C~~~fH~~Cl~ 39 (61)
T 2l5u_A 5 SYETDHQDYCEVCQQGGEIILCDTCPRAYHMVCLD 39 (61)
T ss_dssp CCSSCCCSSCTTTSCCSSEEECSSSSCEEEHHHHC
T ss_pred cccCCCCCCCccCCCCCcEEECCCCChhhhhhccC
Confidence 33445667888887643222224566677777764
No 103
>2ffw_A Midline-1; B-BOX, ring finger, zinc-finger, ligase; NMR {Homo sapiens}
Probab=23.78 E-value=45 Score=22.77 Aligned_cols=31 Identities=23% Similarity=0.548 Sum_probs=23.4
Q ss_pred Cccccccccccc-CCCc--ccCCCCcccHHHHhc
Q 029884 152 RNDECGICMENC-TKMV--LPNCGHSLCVNCFHD 182 (186)
Q Consensus 152 ~e~eC~IClE~~-~~~V--l~~CGH~FC~~Cl~~ 182 (186)
.+..|..|.+.. .+.+ -..|.-+||..|++.
T Consensus 29 ~~v~C~~C~~~~~~~A~ksCl~C~~s~C~~hl~~ 62 (78)
T 2ffw_A 29 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKA 62 (78)
T ss_dssp CCCBCSSCCSSSCCBCCEEETTTTEEECHHHHHH
T ss_pred CCccCCcCCCCCCCCCeeEccCccchhhhhhhHh
Confidence 357899998644 3333 467999999999985
No 104
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=21.19 E-value=77 Score=21.13 Aligned_cols=30 Identities=17% Similarity=0.582 Sum_probs=21.7
Q ss_pred CcccccccccccCCCcccCCCCcccHHHHh
Q 029884 152 RNDECGICMENCTKMVLPNCGHSLCVNCFH 181 (186)
Q Consensus 152 ~e~eC~IClE~~~~~Vl~~CGH~FC~~Cl~ 181 (186)
....|.||.+.-.-..--.|...|...|+.
T Consensus 11 ~~~~C~vC~~~~~ll~Cd~C~~~~H~~Cl~ 40 (66)
T 2lri_C 11 PGARCGVCGDGTDVLRCTHCAAAFHWRCHF 40 (66)
T ss_dssp TTCCCTTTSCCTTCEECSSSCCEECHHHHC
T ss_pred CCCCcCCCCCCCeEEECCCCCCceecccCC
Confidence 456799998754433346789999999985
No 105
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=20.66 E-value=48 Score=21.55 Aligned_cols=31 Identities=16% Similarity=0.548 Sum_probs=16.7
Q ss_pred CCcccccccccccCCCcccCCCCcccHHHHh
Q 029884 151 DRNDECGICMENCTKMVLPNCGHSLCVNCFH 181 (186)
Q Consensus 151 ~~e~eC~IClE~~~~~Vl~~CGH~FC~~Cl~ 181 (186)
.++..|.||.+.-.-..--.|...|...|+.
T Consensus 7 ~~~~~C~vC~~~g~ll~Cd~C~~~fH~~Cl~ 37 (61)
T 1mm2_A 7 HHMEFCRVCKDGGELLCCDTCPSSYHIHCLN 37 (61)
T ss_dssp SSCSSCTTTCCCSSCBCCSSSCCCBCSSSSS
T ss_pred CCCCcCCCCCCCCCEEEcCCCCHHHcccccC
Confidence 3456788887543222234465566565554
No 106
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.64 E-value=43 Score=23.68 Aligned_cols=30 Identities=23% Similarity=0.617 Sum_probs=23.7
Q ss_pred CCccccccccccc-----CCCcccCCCCcccHHHH
Q 029884 151 DRNDECGICMENC-----TKMVLPNCGHSLCVNCF 180 (186)
Q Consensus 151 ~~e~eC~IClE~~-----~~~Vl~~CGH~FC~~Cl 180 (186)
..+..|..|.+.. +..+-..|.|..|.+|=
T Consensus 23 ~~~r~CarC~~~LG~l~~~g~~C~~Ck~rVC~~Cr 57 (76)
T 2csz_A 23 YSDRTCARCQESLGRLSPKTNTCRGCNHLVCRDCR 57 (76)
T ss_dssp CCCCBCSSSCCBCSSSCTTTSEETTTTEECCTTSE
T ss_pred CCccchhhhCccccccccCCCcCcccChhhccccc
Confidence 4677999999863 34556889999999995
No 107
>2uzg_A Ubiquitin carboxyl-terminal hydrolase 33; UBL conjugation pathway, DE-ubiquitination, alternative splicing, metal-binding, thiol protease; NMR {Homo sapiens} SCOP: g.44.1.5
Probab=20.34 E-value=42 Score=24.03 Aligned_cols=26 Identities=15% Similarity=0.272 Sum_probs=18.0
Q ss_pred cccccccccccCC-CcccC--CCCcccHH
Q 029884 153 NDECGICMENCTK-MVLPN--CGHSLCVN 178 (186)
Q Consensus 153 e~eC~IClE~~~~-~Vl~~--CGH~FC~~ 178 (186)
...|..|...... .+-.. |||.+|..
T Consensus 25 ~~~C~~C~~~~~~lw~CL~~~Cg~vgCgr 53 (97)
T 2uzg_A 25 LGTCQDCKVQGPNLWACLENRCSYVGCGE 53 (97)
T ss_dssp TTCCSSSCCCCSSCEEECCTTCCCEECCT
T ss_pred CCcCcCcCCCCCCceeeecccCCCcccCC
Confidence 4579999854433 44455 99999964
No 108
>2l5q_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Bacteroides vulgatus}
Probab=20.28 E-value=47 Score=26.13 Aligned_cols=26 Identities=23% Similarity=0.500 Sum_probs=20.9
Q ss_pred eCCCcc-cc-chhhhhHHHHHhhhhcch
Q 029884 85 VDGMPA-LS-SKERKATLREFYAIIYPS 110 (186)
Q Consensus 85 ~DGk~~-~s-~~~Rkati~efYa~I~ps 110 (186)
.+|+.+ ++ ....++.+++||+.|+|.
T Consensus 73 e~g~~~~i~~~Kas~~eL~~yf~eVLP~ 100 (142)
T 2l5q_A 73 ENGAVASINYKKASADELHAYFAEVLPN 100 (142)
T ss_dssp TTTCCCSSCTTTSCHHHHHHHHTTTCTT
T ss_pred hcCCccccccccCCHHHHHHHHHHhCCC
Confidence 457665 66 667788899999999998
Done!