Query 029885
Match_columns 186
No_of_seqs 173 out of 1658
Neff 9.3
Searched_HMMs 46136
Date Fri Mar 29 05:11:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029885.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029885hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1030 Predicted Ca2+-depende 100.0 5.1E-31 1.1E-35 186.6 14.2 162 25-186 3-165 (168)
2 cd04038 C2_ArfGAP C2 domain pr 100.0 1.8E-27 3.9E-32 169.4 18.8 144 28-172 2-145 (145)
3 cd04016 C2_Tollip C2 domain pr 99.9 5.1E-24 1.1E-28 147.1 14.7 102 27-128 1-104 (121)
4 cd08682 C2_Rab11-FIP_classI C2 99.9 2E-23 4.4E-28 145.7 13.0 100 30-129 1-109 (126)
5 cd08375 C2_Intersectin C2 doma 99.9 2.8E-22 6E-27 141.6 15.7 123 24-180 11-135 (136)
6 cd04042 C2A_MCTP_PRT C2 domain 99.9 2.5E-22 5.3E-27 139.2 14.8 102 29-130 1-104 (121)
7 cd08376 C2B_MCTP_PRT C2 domain 99.9 6E-22 1.3E-26 136.2 14.6 100 29-128 1-102 (116)
8 cd08681 C2_fungal_Inn1p-like C 99.9 2.9E-22 6.2E-27 138.2 12.5 100 28-128 1-103 (118)
9 cd08678 C2_C21orf25-like C2 do 99.9 1E-21 2.3E-26 137.0 14.9 121 30-184 1-123 (126)
10 cd08391 C2A_C2C_Synaptotagmin_ 99.9 5.5E-22 1.2E-26 137.2 13.3 113 28-180 1-121 (121)
11 cd04022 C2A_MCTP_PRT_plant C2 99.9 5.4E-22 1.2E-26 138.7 12.9 100 29-128 1-107 (127)
12 cd08379 C2D_MCTP_PRT_plant C2 99.9 7.1E-22 1.5E-26 137.3 12.6 100 30-129 2-111 (126)
13 cd08401 C2A_RasA2_RasA3 C2 dom 99.9 1.7E-21 3.8E-26 134.9 14.2 99 30-128 2-103 (121)
14 cd08677 C2A_Synaptotagmin-13 C 99.9 7.3E-22 1.6E-26 134.8 10.4 100 25-126 11-117 (118)
15 cd04044 C2A_Tricalbin-like C2 99.9 2.9E-21 6.2E-26 134.2 13.0 95 27-121 1-99 (124)
16 cd04019 C2C_MCTP_PRT_plant C2 99.9 6.8E-21 1.5E-25 136.5 14.7 101 30-130 2-109 (150)
17 cd04036 C2_cPLA2 C2 domain pre 99.9 4.8E-21 1E-25 132.4 13.4 94 30-124 2-100 (119)
18 cd04024 C2A_Synaptotagmin-like 99.9 6.6E-21 1.4E-25 133.1 14.1 101 28-128 1-108 (128)
19 cd08377 C2C_MCTP_PRT C2 domain 99.9 1.1E-20 2.4E-25 130.4 14.6 99 28-128 1-100 (119)
20 cd04025 C2B_RasA1_RasA4 C2 dom 99.9 8.7E-21 1.9E-25 131.8 13.9 102 29-130 1-104 (123)
21 cd08395 C2C_Munc13 C2 domain t 99.9 5.6E-21 1.2E-25 131.7 12.7 102 29-130 1-113 (120)
22 cd04033 C2_NEDD4_NEDD4L C2 dom 99.9 1E-20 2.3E-25 133.0 13.2 91 29-119 1-99 (133)
23 cd08400 C2_Ras_p21A1 C2 domain 99.9 5E-20 1.1E-24 128.5 15.2 100 27-129 3-104 (126)
24 cd04015 C2_plant_PLD C2 domain 99.9 4.6E-20 9.9E-25 133.4 15.4 102 27-129 6-139 (158)
25 cd08381 C2B_PI3K_class_II C2 d 99.9 1E-20 2.2E-25 131.2 11.5 101 27-127 12-121 (122)
26 cd04028 C2B_RIM1alpha C2 domai 99.9 1.7E-20 3.7E-25 133.3 12.5 104 27-130 28-139 (146)
27 cd04032 C2_Perforin C2 domain 99.9 1.7E-20 3.7E-25 130.5 12.1 109 10-118 10-120 (127)
28 cd04046 C2_Calpain C2 domain p 99.9 6.2E-20 1.3E-24 128.1 14.9 90 27-117 2-92 (126)
29 cd04029 C2A_SLP-4_5 C2 domain 99.8 3E-20 6.5E-25 129.4 12.4 104 24-127 11-124 (125)
30 cd04054 C2A_Rasal1_RasA4 C2 do 99.8 7E-20 1.5E-24 126.9 14.1 99 30-128 2-103 (121)
31 cd08393 C2A_SLP-1_2 C2 domain 99.8 1.5E-20 3.2E-25 131.0 9.8 103 25-127 12-124 (125)
32 cd04014 C2_PKC_epsilon C2 doma 99.8 1.4E-19 3E-24 127.3 14.8 114 27-182 3-130 (132)
33 cd04039 C2_PSD C2 domain prese 99.8 5.9E-20 1.3E-24 124.7 12.1 93 28-120 1-100 (108)
34 cd08387 C2A_Synaptotagmin-8 C2 99.8 6.1E-20 1.3E-24 127.7 12.4 104 25-128 13-123 (124)
35 cd08378 C2B_MCTP_PRT_plant C2 99.8 6.2E-20 1.3E-24 127.1 12.3 85 30-118 2-87 (121)
36 cd04050 C2B_Synaptotagmin-like 99.8 8E-20 1.7E-24 123.5 12.1 97 30-129 2-102 (105)
37 cd08373 C2A_Ferlin C2 domain f 99.8 2.5E-19 5.4E-24 125.1 14.9 116 34-185 2-120 (127)
38 cd08394 C2A_Munc13 C2 domain f 99.8 1.3E-19 2.8E-24 124.9 12.2 99 28-130 2-102 (127)
39 cd08385 C2A_Synaptotagmin-1-5- 99.8 1.3E-19 2.8E-24 126.0 12.4 104 25-128 13-123 (124)
40 cd08688 C2_KIAA0528-like C2 do 99.8 9.7E-20 2.1E-24 124.1 11.1 99 30-128 1-108 (110)
41 cd04010 C2B_RasA3 C2 domain se 99.8 7.1E-20 1.5E-24 130.7 10.8 101 29-130 1-123 (148)
42 cd04043 C2_Munc13_fungal C2 do 99.8 5.8E-19 1.3E-23 123.0 14.7 89 29-117 2-95 (126)
43 cd04027 C2B_Munc13 C2 domain s 99.8 3.8E-19 8.3E-24 124.2 13.3 100 28-129 1-112 (127)
44 cd08680 C2_Kibra C2 domain fou 99.8 1.1E-19 2.4E-24 126.1 10.3 102 25-126 11-123 (124)
45 cd08392 C2A_SLP-3 C2 domain fi 99.8 1.7E-19 3.7E-24 126.0 11.2 103 25-127 12-127 (128)
46 cd04017 C2D_Ferlin C2 domain f 99.8 1.3E-18 2.8E-23 122.8 15.4 83 29-111 2-95 (135)
47 cd04041 C2A_fungal C2 domain f 99.8 1.7E-19 3.6E-24 123.2 10.5 89 28-116 1-98 (111)
48 cd04031 C2A_RIM1alpha C2 domai 99.8 3.1E-19 6.6E-24 124.2 11.6 102 25-127 13-124 (125)
49 cd04049 C2_putative_Elicitor-r 99.8 4.3E-19 9.3E-24 123.4 12.2 103 28-130 1-109 (124)
50 cd04030 C2C_KIAA1228 C2 domain 99.8 3.9E-19 8.5E-24 124.0 11.9 103 25-127 13-126 (127)
51 cd08685 C2_RGS-like C2 domain 99.8 2.1E-19 4.6E-24 124.1 10.0 102 26-127 10-119 (119)
52 cd04045 C2C_Tricalbin-like C2 99.8 1.4E-18 3E-23 120.2 14.0 102 28-130 1-104 (120)
53 cd08382 C2_Smurf-like C2 domai 99.8 9.7E-19 2.1E-23 121.5 13.1 99 29-128 1-104 (123)
54 cd08386 C2A_Synaptotagmin-7 C2 99.8 6.6E-19 1.4E-23 122.6 11.9 104 25-128 13-124 (125)
55 cd08388 C2A_Synaptotagmin-4-11 99.8 7.1E-19 1.5E-23 123.0 12.1 103 25-127 13-126 (128)
56 cd04051 C2_SRC2_like C2 domain 99.8 4.2E-19 9E-24 123.6 10.6 92 29-120 1-100 (125)
57 cd08389 C2A_Synaptotagmin-14_1 99.8 5.2E-19 1.1E-23 123.0 10.8 104 24-128 12-123 (124)
58 cd04018 C2C_Ferlin C2 domain t 99.8 1.1E-18 2.4E-23 124.9 12.4 90 30-119 2-108 (151)
59 cd04011 C2B_Ferlin C2 domain s 99.8 1.9E-18 4E-23 118.0 13.0 100 26-128 2-109 (111)
60 cd08390 C2A_Synaptotagmin-15-1 99.8 1.7E-18 3.7E-23 120.1 12.6 104 25-128 11-122 (123)
61 cd04020 C2B_SLP_1-2-3-4 C2 dom 99.8 9.3E-19 2E-23 127.0 10.9 105 26-130 25-139 (162)
62 cd08690 C2_Freud-1 C2 domain f 99.8 5.8E-18 1.3E-22 121.3 14.4 101 30-130 4-122 (155)
63 cd08521 C2A_SLP C2 domain firs 99.8 2.2E-18 4.8E-23 119.5 11.9 103 25-127 11-123 (123)
64 cd04040 C2D_Tricalbin-like C2 99.8 4.5E-18 9.8E-23 116.6 12.9 101 30-130 1-104 (115)
65 cd08676 C2A_Munc13-like C2 dom 99.8 3.3E-18 7.1E-23 122.6 11.6 100 23-127 23-153 (153)
66 cd04052 C2B_Tricalbin-like C2 99.8 4.8E-18 1E-22 116.0 11.8 100 45-183 10-111 (111)
67 cd04013 C2_SynGAP_like C2 doma 99.8 2E-17 4.4E-22 117.3 14.0 102 25-130 8-114 (146)
68 cd08675 C2B_RasGAP C2 domain s 99.8 5.6E-18 1.2E-22 119.8 10.9 101 30-130 1-121 (137)
69 cd04021 C2_E3_ubiquitin_ligase 99.8 3E-17 6.5E-22 114.3 14.2 90 28-119 2-93 (125)
70 cd04009 C2B_Munc13-like C2 dom 99.8 7.9E-18 1.7E-22 118.5 10.9 95 25-119 13-120 (133)
71 cd08404 C2B_Synaptotagmin-4 C2 99.8 5.4E-18 1.2E-22 119.8 9.7 102 25-128 12-122 (136)
72 cd04048 C2A_Copine C2 domain f 99.8 1.2E-17 2.5E-22 115.6 11.0 98 33-130 5-115 (120)
73 cd08406 C2B_Synaptotagmin-12 C 99.8 2.8E-18 6E-23 121.0 8.0 101 25-127 12-121 (136)
74 KOG1028 Ca2+-dependent phospho 99.8 1.2E-17 2.6E-22 137.6 12.7 106 25-130 164-276 (421)
75 cd08692 C2B_Tac2-N C2 domain s 99.8 8.4E-18 1.8E-22 117.4 10.1 103 24-127 10-121 (135)
76 cd08384 C2B_Rabphilin_Doc2 C2 99.8 4.4E-18 9.4E-23 119.7 8.7 101 25-127 10-119 (133)
77 cd08383 C2A_RasGAP C2 domain ( 99.8 3.9E-17 8.4E-22 112.2 13.1 96 30-130 2-101 (117)
78 cd04037 C2E_Ferlin C2 domain f 99.8 2.2E-17 4.8E-22 114.8 12.0 89 29-117 1-93 (124)
79 cd08691 C2_NEDL1-like C2 domai 99.7 9.2E-17 2E-21 113.3 14.0 98 29-128 2-120 (137)
80 cd04026 C2_PKC_alpha_gamma C2 99.7 2.7E-17 5.9E-22 115.4 11.2 102 28-130 13-122 (131)
81 cd08407 C2B_Synaptotagmin-13 C 99.7 8.7E-18 1.9E-22 118.6 8.6 101 25-127 12-123 (138)
82 cd08408 C2B_Synaptotagmin-14_1 99.7 1.2E-17 2.6E-22 118.2 8.3 104 24-128 11-124 (138)
83 cd08402 C2B_Synaptotagmin-1 C2 99.7 1.6E-17 3.5E-22 117.3 8.8 101 25-127 12-121 (136)
84 cd00276 C2B_Synaptotagmin C2 d 99.7 1.4E-17 3.1E-22 117.0 8.5 104 25-130 11-123 (134)
85 cd04035 C2A_Rabphilin_Doc2 C2 99.7 9.1E-17 2E-21 111.5 12.4 100 26-126 13-122 (123)
86 cd08410 C2B_Synaptotagmin-17 C 99.7 1.7E-17 3.6E-22 117.1 8.1 102 25-127 11-121 (135)
87 cd08403 C2B_Synaptotagmin-3-5- 99.7 2.4E-17 5.2E-22 116.1 8.6 101 25-127 11-120 (134)
88 KOG0696 Serine/threonine prote 99.7 2.2E-18 4.7E-23 138.2 3.5 95 26-120 178-280 (683)
89 PLN03008 Phospholipase D delta 99.7 1.3E-16 2.8E-21 137.7 14.2 125 26-184 12-180 (868)
90 cd08405 C2B_Synaptotagmin-7 C2 99.7 4.1E-17 8.8E-22 115.2 9.1 102 25-128 12-122 (136)
91 cd08409 C2B_Synaptotagmin-15 C 99.7 4.3E-17 9.2E-22 115.3 8.5 105 25-129 12-124 (137)
92 PLN03200 cellulose synthase-in 99.7 2.9E-17 6.3E-22 152.6 9.4 101 26-128 1978-2081(2102)
93 cd00275 C2_PLC_like C2 domain 99.7 1.2E-15 2.6E-20 106.4 15.1 90 28-118 2-102 (128)
94 cd04047 C2B_Copine C2 domain s 99.7 1E-15 2.2E-20 104.2 10.5 88 32-120 4-103 (110)
95 cd08686 C2_ABR C2 domain in th 99.7 3.4E-15 7.3E-20 101.8 11.6 80 30-114 1-92 (118)
96 PF00168 C2: C2 domain; Inter 99.6 4.8E-15 1E-19 95.5 8.5 80 30-109 1-85 (85)
97 cd00030 C2 C2 domain. The C2 d 99.5 2E-13 4.3E-18 89.7 11.0 97 30-126 1-101 (102)
98 smart00239 C2 Protein kinase C 99.5 2.3E-13 5E-18 89.8 11.0 92 30-121 2-98 (101)
99 cd08374 C2F_Ferlin C2 domain s 99.5 2.2E-13 4.7E-18 95.1 9.3 91 29-119 1-125 (133)
100 KOG2059 Ras GTPase-activating 99.5 1.4E-13 3.1E-18 115.8 8.6 100 28-128 5-106 (800)
101 PLN02223 phosphoinositide phos 99.5 2.5E-12 5.4E-17 107.3 14.6 96 27-122 408-515 (537)
102 KOG0169 Phosphoinositide-speci 99.4 1.2E-12 2.5E-17 111.5 11.4 96 29-124 617-724 (746)
103 COG5038 Ca2+-dependent lipid-b 99.4 1.6E-12 3.5E-17 114.7 11.0 120 1-123 412-535 (1227)
104 KOG1011 Neurotransmitter relea 99.4 5.6E-13 1.2E-17 111.7 7.5 104 25-130 292-407 (1283)
105 PLN02270 phospholipase D alpha 99.4 1E-11 2.3E-16 107.6 13.8 104 26-130 6-130 (808)
106 PLN02952 phosphoinositide phos 99.4 1.8E-11 3.9E-16 104.0 14.8 94 27-120 469-575 (599)
107 KOG1028 Ca2+-dependent phospho 99.4 3.8E-12 8.3E-17 105.1 9.8 90 25-114 295-393 (421)
108 PLN02230 phosphoinositide phos 99.3 2.3E-11 5E-16 103.2 13.4 96 27-122 468-576 (598)
109 PLN02222 phosphoinositide phos 99.3 5.6E-11 1.2E-15 100.7 14.6 96 27-122 451-559 (581)
110 COG5038 Ca2+-dependent lipid-b 99.3 6E-12 1.3E-16 111.2 8.8 106 25-130 1037-1145(1227)
111 cd08689 C2_fungal_Pkc1p C2 dom 99.3 3.9E-11 8.4E-16 79.5 8.2 87 30-121 1-92 (109)
112 PLN02228 Phosphoinositide phos 99.2 3.1E-10 6.6E-15 96.0 14.4 96 27-122 430-539 (567)
113 KOG1264 Phospholipase C [Lipid 99.1 3.5E-10 7.6E-15 97.1 10.7 94 27-120 1064-1165(1267)
114 KOG1031 Predicted Ca2+-depende 99.1 2.1E-10 4.5E-15 95.6 7.7 92 27-118 2-99 (1169)
115 KOG1328 Synaptic vesicle prote 99.0 1.2E-10 2.7E-15 98.8 1.9 96 22-117 941-1049(1103)
116 PLN02352 phospholipase D epsil 98.8 1.3E-07 2.9E-12 82.3 12.2 97 26-130 8-113 (758)
117 KOG1328 Synaptic vesicle prote 98.7 3.2E-09 6.9E-14 90.4 0.4 123 25-166 111-302 (1103)
118 KOG0905 Phosphoinositide 3-kin 98.7 1.6E-08 3.5E-13 89.9 4.2 103 26-128 1522-1634(1639)
119 KOG2059 Ras GTPase-activating 98.7 4.1E-08 8.9E-13 83.5 6.0 96 35-130 138-254 (800)
120 KOG1326 Membrane-associated pr 98.6 2.1E-08 4.5E-13 87.9 3.8 90 25-114 610-703 (1105)
121 KOG1011 Neurotransmitter relea 98.5 5.8E-07 1.3E-11 76.3 8.9 105 26-130 1123-1238(1283)
122 KOG1013 Synaptic vesicle prote 98.4 5.8E-07 1.2E-11 70.6 5.1 87 25-111 230-325 (362)
123 PLN02964 phosphatidylserine de 98.3 2.1E-06 4.6E-11 74.2 6.8 94 21-120 47-142 (644)
124 cd08683 C2_C2cd3 C2 domain fou 98.2 2.4E-06 5.2E-11 58.7 4.0 97 30-126 1-142 (143)
125 KOG2060 Rab3 effector RIM1 and 98.2 1.6E-06 3.5E-11 69.1 3.4 106 25-130 266-380 (405)
126 KOG1013 Synaptic vesicle prote 98.1 2.6E-07 5.5E-12 72.5 -1.5 95 26-120 91-195 (362)
127 KOG3837 Uncharacterized conser 98.1 2.8E-06 6.1E-11 68.7 3.5 106 26-131 365-489 (523)
128 cd08684 C2A_Tac2-N C2 domain f 98.0 6.5E-06 1.4E-10 52.8 3.6 86 32-119 3-96 (103)
129 KOG1326 Membrane-associated pr 97.9 2E-06 4.4E-11 75.8 0.0 110 20-130 198-318 (1105)
130 KOG1327 Copine [Signal transdu 97.7 6.9E-05 1.5E-09 63.0 6.2 82 35-117 143-236 (529)
131 PF15627 CEP76-C2: CEP76 C2 do 97.3 0.0091 2E-07 42.8 11.0 96 25-120 6-120 (156)
132 cd08398 C2_PI3K_class_I_alpha 97.2 0.012 2.7E-07 42.4 10.9 85 28-115 8-106 (158)
133 cd08693 C2_PI3K_class_I_beta_d 97.1 0.0096 2.1E-07 43.6 10.2 88 28-116 8-121 (173)
134 cd08380 C2_PI3K_like C2 domain 97.0 0.014 3E-07 42.0 9.8 88 28-115 8-107 (156)
135 KOG1265 Phospholipase C [Lipid 96.8 0.0029 6.2E-08 56.1 6.1 88 28-122 703-801 (1189)
136 cd08397 C2_PI3K_class_III C2 d 96.8 0.021 4.7E-07 41.2 9.7 70 46-115 28-107 (159)
137 cd08687 C2_PKN-like C2 domain 96.5 0.049 1.1E-06 35.4 8.5 65 46-115 7-72 (98)
138 PF10358 NT-C2: N-terminal C2 96.4 0.18 4E-06 35.3 13.8 89 27-118 6-107 (143)
139 cd04012 C2A_PI3K_class_II C2 d 96.4 0.055 1.2E-06 39.5 9.5 88 28-115 8-119 (171)
140 cd08399 C2_PI3K_class_I_gamma 96.2 0.17 3.7E-06 37.3 11.4 87 28-115 10-122 (178)
141 KOG1452 Predicted Rho GTPase-a 96.2 0.0087 1.9E-07 47.4 4.7 91 24-115 47-141 (442)
142 PF12416 DUF3668: Cep120 prote 96.0 0.074 1.6E-06 43.1 9.4 99 30-130 2-114 (340)
143 PF07162 B9-C2: Ciliary basal 95.9 0.44 9.4E-06 34.7 13.0 80 30-114 4-103 (168)
144 cd08695 C2_Dock-B C2 domains f 95.5 0.39 8.4E-06 35.7 10.7 54 60-113 54-112 (189)
145 PF14429 DOCK-C2: C2 domain in 95.4 0.52 1.1E-05 34.7 11.2 54 61-114 61-120 (184)
146 PF00792 PI3K_C2: Phosphoinosi 95.2 0.24 5.2E-06 34.9 8.5 54 62-115 23-85 (142)
147 KOG1327 Copine [Signal transdu 94.9 0.093 2E-06 44.7 6.4 69 60-128 42-115 (529)
148 cd08694 C2_Dock-A C2 domains f 94.8 0.99 2.1E-05 33.7 11.1 54 60-113 54-114 (196)
149 smart00142 PI3K_C2 Phosphoinos 93.8 0.92 2E-05 29.9 8.3 68 30-97 13-91 (100)
150 PF15625 CC2D2AN-C2: CC2D2A N- 92.9 2.7 5.8E-05 30.6 11.9 71 47-118 36-109 (168)
151 PF11618 DUF3250: Protein of u 92.5 1.6 3.4E-05 29.3 7.9 67 51-119 2-77 (107)
152 cd08679 C2_DOCK180_related C2 90.9 3.9 8.4E-05 30.0 9.3 52 63-114 56-115 (178)
153 cd08696 C2_Dock-C C2 domains f 88.9 3 6.6E-05 30.7 7.3 56 59-114 54-118 (179)
154 PTZ00447 apical membrane antig 79.6 21 0.00045 29.3 8.6 81 29-114 59-141 (508)
155 cd08697 C2_Dock-D C2 domains f 76.5 28 0.00062 25.8 15.9 56 59-114 56-123 (185)
156 KOG0694 Serine/threonine prote 70.3 1.3 2.9E-05 38.9 -0.1 69 47-116 27-96 (694)
157 KOG1329 Phospholipase D1 [Lipi 69.2 4.1 8.9E-05 37.1 2.6 82 48-129 138-221 (887)
158 KOG4269 Rac GTPase-activating 60.4 8.7 0.00019 35.2 2.9 72 10-85 741-817 (1112)
159 KOG4028 Uncharacterized conser 56.7 49 0.0011 23.1 5.5 26 88-113 75-102 (175)
160 KOG0904 Phosphatidylinositol 3 54.5 83 0.0018 29.3 7.9 67 28-96 343-421 (1076)
161 PF14924 DUF4497: Protein of u 50.0 75 0.0016 21.2 6.2 31 88-118 30-63 (112)
162 PF10409 PTEN_C2: C2 domain of 44.6 1E+02 0.0022 21.1 9.4 87 29-116 5-98 (134)
163 KOG0906 Phosphatidylinositol 3 44.4 21 0.00045 31.8 2.6 53 62-114 67-123 (843)
164 PF01060 DUF290: Transthyretin 41.8 51 0.0011 20.5 3.6 25 87-111 12-36 (80)
165 KOG2419 Phosphatidylserine dec 40.7 8.2 0.00018 34.1 -0.3 71 28-99 280-357 (975)
166 PF14909 SPATA6: Spermatogenes 39.3 1.4E+02 0.003 21.2 9.0 72 46-118 18-102 (140)
167 PF04663 Phenol_monoox: Phenol 34.7 14 0.0003 22.6 0.1 9 1-9 23-31 (67)
168 KOG4027 Uncharacterized conser 32.8 1.5E+02 0.0033 21.5 5.1 41 73-113 65-109 (187)
169 PF12416 DUF3668: Cep120 prote 32.3 2.8E+02 0.0062 22.7 7.7 88 27-119 191-297 (340)
170 KOG3543 Ca2+-dependent activat 28.0 3.4E+02 0.0074 24.5 7.3 79 30-110 343-424 (1218)
171 PF14186 Aida_C2: Cytoskeletal 21.2 3.2E+02 0.0069 19.5 8.0 92 25-118 10-115 (147)
No 1
>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=99.97 E-value=5.1e-31 Score=186.64 Aligned_cols=162 Identities=43% Similarity=0.691 Sum_probs=148.4
Q ss_pred CcceEEEEEEEEeEcCCCCC-CCCCCcEEEEEECCeEEEeeeeeCCCCCeecCeEEEEeeCCCceEEEEEEEcCCCCCCC
Q 029885 25 QPFGQLKVTVVQGKRLVIRD-FKSSDPYVVLKLGNQMAKTKVINSCLNPVWNEEHSLSLTEPVGVLSLEVFDKDRFKADD 103 (186)
Q Consensus 25 ~~~~~L~v~i~~a~~L~~~~-~~~~dpy~~v~~~~~~~~T~~~~~~~~P~w~e~~~f~v~~~~~~l~v~v~d~~~~~~d~ 103 (186)
...|.|+|.|++|.+|..+| .+.+||||++.+++++.+|+++.++.||.|||.|.|.+.++...|+++|||+|.++.||
T Consensus 3 ~~vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg~q~lkT~~v~~n~NPeWNe~ltf~v~d~~~~lkv~VyD~D~fs~dD 82 (168)
T KOG1030|consen 3 MLVGLLRVRVKRGKNLAIRDFLGSSDPYVVLELGNQKLKTRVVYKNLNPEWNEELTFTVKDPNTPLKVTVYDKDTFSSDD 82 (168)
T ss_pred ccceEEEEEEEeecCeeeeccccCCCCeEEEEECCeeeeeeeecCCCCCcccceEEEEecCCCceEEEEEEeCCCCCccc
Confidence 45799999999999999999 59999999999999999999999999999999999999999889999999999999999
Q ss_pred eeEEEEEecccccccceeeeEEEecCCCeeeEEEeeCCCCeecccceEEEECCEEEEEEeEEecccceecEEEEEEEEeC
Q 029885 104 KMGKAYLNLQPIISAARLRHLVHVSSGETPLRKIIPDSENCLARESSIICINGEVVQNVWLRLCEVESGEIELKVKIVDA 183 (186)
Q Consensus 104 ~lG~~~v~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~G~l~l~l~~~~~ 183 (186)
|+|.++|++..+.+......+..-..+......+.++.++++...+.+.+..|++..+.++++++.+.|+++++++|+..
T Consensus 83 ~mG~A~I~l~p~~~~~~~~~l~~~~~~gt~~~~v~~s~dn~~~~es~i~~s~~~~~q~~~l~l~~ve~g~~e~~~~~~~~ 162 (168)
T KOG1030|consen 83 FMGEATIPLKPLLEAQKMDYLKLELLTGTAIGKVLLSRDNCLNEESAIIRSFGKIVQDYILRLQNVECGELEIQLEWIKL 162 (168)
T ss_pred ccceeeeccHHHHHHhhhhccccccCCCcEeeEEEeccccccccceEEEecCChhhhhhccchhhcCcceeeeeeeEecC
Confidence 99999999999999887765221222347778899999999999999999999999999999999999999999999998
Q ss_pred CCC
Q 029885 184 PSR 186 (186)
Q Consensus 184 ~~~ 186 (186)
+++
T Consensus 163 ~~~ 165 (168)
T KOG1030|consen 163 PGS 165 (168)
T ss_pred ccc
Confidence 863
No 2
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=99.96 E-value=1.8e-27 Score=169.39 Aligned_cols=144 Identities=56% Similarity=0.913 Sum_probs=131.2
Q ss_pred eEEEEEEEEeEcCCCCCCCCCCcEEEEEECCeEEEeeeeeCCCCCeecCeEEEEeeCCCceEEEEEEEcCCCCCCCeeEE
Q 029885 28 GQLKVTVVQGKRLVIRDFKSSDPYVVLKLGNQMAKTKVINSCLNPVWNEEHSLSLTEPVGVLSLEVFDKDRFKADDKMGK 107 (186)
Q Consensus 28 ~~L~v~i~~a~~L~~~~~~~~dpy~~v~~~~~~~~T~~~~~~~~P~w~e~~~f~v~~~~~~l~v~v~d~~~~~~d~~lG~ 107 (186)
|.|.|+|++|++|+..+.+.+|||++++++.+.++|++++++.||.|||+|.|.+..+...+.|+|||++.+++|++||.
T Consensus 2 G~L~V~Vi~a~nL~~~d~~~sDPYV~v~~g~~~~kT~vvk~t~nP~WnE~f~f~i~~~~~~l~~~V~D~d~~~~dd~iG~ 81 (145)
T cd04038 2 GLLKVRVVRGTNLAVRDFTSSDPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSVPNPMAPLKLEVFDKDTFSKDDSMGE 81 (145)
T ss_pred eEEEEEEEeeECCCCCCCCCcCcEEEEEECCEEEEeeeEcCCCCCeecccEEEEecCCCCEEEEEEEECCCCCCCCEEEE
Confidence 78999999999998877678899999999999999999999999999999999999886699999999999999999999
Q ss_pred EEEecccccccceeeeEEEecCCCeeeEEEeeCCCCeecccceEEEECCEEEEEEeEEeccccee
Q 029885 108 AYLNLQPIISAARLRHLVHVSSGETPLRKIIPDSENCLARESSIICINGEVVQNVWLRLCEVESG 172 (186)
Q Consensus 108 ~~v~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~G 172 (186)
+.+++.++.....+.....+ .++..+..+.++.++|++.++.+++.+|++.++++++|++.++|
T Consensus 82 a~i~l~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~l~~~~~g 145 (145)
T cd04038 82 AEIDLEPLVEAAKLDHLRDT-PGGTQIKKVLPSVENCLASESHITWKDGKIVQDLVLKLRNVESG 145 (145)
T ss_pred EEEEHHHhhhhhhhhccccC-CCCEEEEEEecCCCceEeccceEEEECCEEEEEEEEEecccccC
Confidence 99999999987776532233 34588999999999999999999999999999999999999887
No 3
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=99.92 E-value=5.1e-24 Score=147.13 Aligned_cols=102 Identities=25% Similarity=0.482 Sum_probs=89.3
Q ss_pred ceEEEEEEEEeEcCCCCCCCCCCcEEEEEECCeEEEeeeeeC-CCCCeecCeEEEEeeCCCceEEEEEEEcCCCCCCCee
Q 029885 27 FGQLKVTVVQGKRLVIRDFKSSDPYVVLKLGNQMAKTKVINS-CLNPVWNEEHSLSLTEPVGVLSLEVFDKDRFKADDKM 105 (186)
Q Consensus 27 ~~~L~v~i~~a~~L~~~~~~~~dpy~~v~~~~~~~~T~~~~~-~~~P~w~e~~~f~v~~~~~~l~v~v~d~~~~~~d~~l 105 (186)
.|.|.|+|++|++++..+.|.+||||++.++.++++|+++.+ +.||.|||+|.|.+......|.|+|||++.+++|++|
T Consensus 1 ~g~L~v~v~~Ak~l~~~~~g~sDPYv~i~lg~~~~kT~v~~~~~~nP~WNe~F~f~v~~~~~~l~~~V~d~d~~~~dd~i 80 (121)
T cd04016 1 VGRLSITVVQAKLVKNYGLTRMDPYCRIRVGHAVYETPTAYNGAKNPRWNKTIQCTLPEGVDSIYIEIFDERAFTMDERI 80 (121)
T ss_pred CcEEEEEEEEccCCCcCCCCCCCceEEEEECCEEEEeEEccCCCCCCccCeEEEEEecCCCcEEEEEEEeCCCCcCCceE
Confidence 378999999999887666789999999999999999999876 7999999999999987656899999999999999999
Q ss_pred EEEEEecc-cccccceeeeEEEec
Q 029885 106 GKAYLNLQ-PIISAARLRHLVHVS 128 (186)
Q Consensus 106 G~~~v~l~-~l~~~~~~~~~~~l~ 128 (186)
|.+.+++. .+..+...+.|++|.
T Consensus 81 G~~~i~l~~~~~~g~~~~~W~~L~ 104 (121)
T cd04016 81 AWTHITIPESVFNGETLDDWYSLS 104 (121)
T ss_pred EEEEEECchhccCCCCccccEeCc
Confidence 99999996 466666566666665
No 4
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=99.91 E-value=2e-23 Score=145.67 Aligned_cols=100 Identities=27% Similarity=0.463 Sum_probs=88.2
Q ss_pred EEEEEEEeEcCCCCC-CCCCCcEEEEEECCeEEEeeeeeCCCCCeecCeEEEEeeC------CCceEEEEEEEcCCCCCC
Q 029885 30 LKVTVVQGKRLVIRD-FKSSDPYVVLKLGNQMAKTKVINSCLNPVWNEEHSLSLTE------PVGVLSLEVFDKDRFKAD 102 (186)
Q Consensus 30 L~v~i~~a~~L~~~~-~~~~dpy~~v~~~~~~~~T~~~~~~~~P~w~e~~~f~v~~------~~~~l~v~v~d~~~~~~d 102 (186)
++|+|++|++|+..+ .|.+||||++.++..+++|++++++.||.|||+|.|.+.. ....|.++|||++.+++|
T Consensus 1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~~~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~~~d 80 (126)
T cd08682 1 VQVTVLQARGLLCKGKSGTNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLLGLD 80 (126)
T ss_pred CEEEEEECcCCcCCCCCcCCCceEEEEECCeeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEccccCCC
Confidence 479999999999988 8899999999999999999999999999999999999876 234899999999999889
Q ss_pred CeeEEEEEeccccc--ccceeeeEEEecC
Q 029885 103 DKMGKAYLNLQPII--SAARLRHLVHVSS 129 (186)
Q Consensus 103 ~~lG~~~v~l~~l~--~~~~~~~~~~l~~ 129 (186)
++||++.++++++. .+.....|++|..
T Consensus 81 ~~iG~~~i~l~~l~~~~~~~~~~W~~L~~ 109 (126)
T cd08682 81 KFLGQVSIPLNDLDEDKGRRRTRWFKLES 109 (126)
T ss_pred ceeEEEEEEHHHhhccCCCcccEEEECcC
Confidence 99999999999987 4445566766653
No 5
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=99.90 E-value=2.8e-22 Score=141.56 Aligned_cols=123 Identities=32% Similarity=0.525 Sum_probs=104.9
Q ss_pred CCcceEEEEEEEEeEcCCCCC-CCCCCcEEEEEECCeEEEeeeeeCCCCCeecCeEEEEeeCCCc-eEEEEEEEcCCCCC
Q 029885 24 RQPFGQLKVTVVQGKRLVIRD-FKSSDPYVVLKLGNQMAKTKVINSCLNPVWNEEHSLSLTEPVG-VLSLEVFDKDRFKA 101 (186)
Q Consensus 24 ~~~~~~L~v~i~~a~~L~~~~-~~~~dpy~~v~~~~~~~~T~~~~~~~~P~w~e~~~f~v~~~~~-~l~v~v~d~~~~~~ 101 (186)
....|.|.|+|++|++|+..+ .+.+||||++.++...++|++++++.||.|||+|.|.+..... .|.|+|||++.+++
T Consensus 11 ~~~~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~~~~kT~vi~~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~d~~~~ 90 (136)
T cd08375 11 ASGIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQEHKTKVVSDTLNPKWNSSMQFFVKDLEQDVLCITVFDRDFFSP 90 (136)
T ss_pred CCCcEEEEEEEEEeeCCCCCCCCCCcCcEEEEEECCEeeeccccCCCCCCccCceEEEEecCccCCEEEEEEEECCCCCC
Confidence 456799999999999999998 8899999999999999999999999999999999999987544 89999999999989
Q ss_pred CCeeEEEEEecccccccceeeeEEEecCCCeeeEEEeeCCCCeecccceEEEECCEEEEEEeEEecccceecEEEEEEE
Q 029885 102 DDKMGKAYLNLQPIISAARLRHLVHVSSGETPLRKIIPDSENCLARESSIICINGEVVQNVWLRLCEVESGEIELKVKI 180 (186)
Q Consensus 102 d~~lG~~~v~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~G~l~l~l~~ 180 (186)
|++||++.+++.++........ .....|+.++....|+|++++.+
T Consensus 91 d~~lG~~~i~l~~l~~~~~~~~----------------------------------~~~~~~~~~~~~~~g~i~l~~~~ 135 (136)
T cd08375 91 DDFLGRTEIRVADILKETKESK----------------------------------GPITKRLLLHEVPTGEVVVKLDL 135 (136)
T ss_pred CCeeEEEEEEHHHhccccccCC----------------------------------CcEEEEeccccccceeEEEEEEe
Confidence 9999999999998875321100 12345677788899999999876
No 6
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=99.90 E-value=2.5e-22 Score=139.22 Aligned_cols=102 Identities=34% Similarity=0.555 Sum_probs=92.2
Q ss_pred EEEEEEEEeEcCCCCC-CCCCCcEEEEEECC-eEEEeeeeeCCCCCeecCeEEEEeeCCCceEEEEEEEcCCCCCCCeeE
Q 029885 29 QLKVTVVQGKRLVIRD-FKSSDPYVVLKLGN-QMAKTKVINSCLNPVWNEEHSLSLTEPVGVLSLEVFDKDRFKADDKMG 106 (186)
Q Consensus 29 ~L~v~i~~a~~L~~~~-~~~~dpy~~v~~~~-~~~~T~~~~~~~~P~w~e~~~f~v~~~~~~l~v~v~d~~~~~~d~~lG 106 (186)
+|.|+|++|++|+..+ .+.+|||+++.+++ ..++|+++.++.||.|||+|.|.+......|.|+|||++..+++++||
T Consensus 1 ~L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~l~~~v~D~d~~~~~~~iG 80 (121)
T cd04042 1 QLDIHLKEGRNLAARDRGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIEDVTQPLYIKVFDYDRGLTDDFMG 80 (121)
T ss_pred CeEEEEEEeeCCCCcCCCCCCCCeEEEEECCEEEEEeeeccCCCCCccceeEEEEecCCCCeEEEEEEeCCCCCCCcceE
Confidence 4889999999999988 88999999999976 568999999999999999999998876669999999999998999999
Q ss_pred EEEEecccccccceeeeEEEecCC
Q 029885 107 KAYLNLQPIISAARLRHLVHVSSG 130 (186)
Q Consensus 107 ~~~v~l~~l~~~~~~~~~~~l~~~ 130 (186)
.+.+++.++..+...+.|++|...
T Consensus 81 ~~~~~l~~l~~~~~~~~~~~L~~~ 104 (121)
T cd04042 81 SAFVDLSTLELNKPTEVKLKLEDP 104 (121)
T ss_pred EEEEEHHHcCCCCCeEEEEECCCC
Confidence 999999999988888888777644
No 7
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=99.89 E-value=6e-22 Score=136.22 Aligned_cols=100 Identities=33% Similarity=0.521 Sum_probs=88.2
Q ss_pred EEEEEEEEeEcCCCCC-CCCCCcEEEEEECCeEEEeeeeeCCCCCeecCeEEEEeeCC-CceEEEEEEEcCCCCCCCeeE
Q 029885 29 QLKVTVVQGKRLVIRD-FKSSDPYVVLKLGNQMAKTKVINSCLNPVWNEEHSLSLTEP-VGVLSLEVFDKDRFKADDKMG 106 (186)
Q Consensus 29 ~L~v~i~~a~~L~~~~-~~~~dpy~~v~~~~~~~~T~~~~~~~~P~w~e~~~f~v~~~-~~~l~v~v~d~~~~~~d~~lG 106 (186)
.++|+|++|++|+..+ .+.+|||+++++++.+++|+++.++.||.|||+|.|.+... ...|.|+|||++.++++++||
T Consensus 1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~~~~~~~iG 80 (116)
T cd08376 1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLHLFDDQSQILEIEVWDKDTGKKDEFIG 80 (116)
T ss_pred CEEEEEEEEECCCCCCCCCCCCcEEEEEECCEeEecccccCCCCCceeEEEEEEecCCCCCEEEEEEEECCCCCCCCeEE
Confidence 3789999999999998 88999999999999999999999999999999999998876 359999999999998999999
Q ss_pred EEEEecccccccceeeeEEEec
Q 029885 107 KAYLNLQPIISAARLRHLVHVS 128 (186)
Q Consensus 107 ~~~v~l~~l~~~~~~~~~~~l~ 128 (186)
++.++++++..+..++.|++|.
T Consensus 81 ~~~~~l~~l~~~~~~~~w~~L~ 102 (116)
T cd08376 81 RCEIDLSALPREQTHSLELELE 102 (116)
T ss_pred EEEEeHHHCCCCCceEEEEEcc
Confidence 9999999887665555554443
No 8
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=99.89 E-value=2.9e-22 Score=138.21 Aligned_cols=100 Identities=30% Similarity=0.542 Sum_probs=87.5
Q ss_pred eEEEEEEEEeEcCCCCC-CCCCCcEEEEEECCeEEEeeeeeC-CCCCeecCeEEEEeeCCC-ceEEEEEEEcCCCCCCCe
Q 029885 28 GQLKVTVVQGKRLVIRD-FKSSDPYVVLKLGNQMAKTKVINS-CLNPVWNEEHSLSLTEPV-GVLSLEVFDKDRFKADDK 104 (186)
Q Consensus 28 ~~L~v~i~~a~~L~~~~-~~~~dpy~~v~~~~~~~~T~~~~~-~~~P~w~e~~~f~v~~~~-~~l~v~v~d~~~~~~d~~ 104 (186)
|.|.|+|++|++|+..+ .+.+|||+++.++...++|+++.+ +.||.|||.|.|.+..+. ..|.|+|||++..+ |++
T Consensus 1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~-~~~ 79 (118)
T cd08681 1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDKRK-PDL 79 (118)
T ss_pred CEEEEEEEEccCCCCCCcCCCCCceEEEEECCCccccccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCC-Ccc
Confidence 57999999999999988 889999999999988899998765 789999999999998753 48999999999875 899
Q ss_pred eEEEEEecccccccceeeeEEEec
Q 029885 105 MGKAYLNLQPIISAARLRHLVHVS 128 (186)
Q Consensus 105 lG~~~v~l~~l~~~~~~~~~~~l~ 128 (186)
||++.++++++..+.....|+.|.
T Consensus 80 iG~~~~~l~~~~~~~~~~~w~~L~ 103 (118)
T cd08681 80 IGDTEVDLSPALKEGEFDDWYELT 103 (118)
T ss_pred eEEEEEecHHHhhcCCCCCcEEec
Confidence 999999999987766666666664
No 9
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=99.89 E-value=1e-21 Score=137.03 Aligned_cols=121 Identities=21% Similarity=0.323 Sum_probs=102.6
Q ss_pred EEEEEEEeEcCCCCCCCCCCcEEEEEECC--eEEEeeeeeCCCCCeecCeEEEEeeCCCceEEEEEEEcCCCCCCCeeEE
Q 029885 30 LKVTVVQGKRLVIRDFKSSDPYVVLKLGN--QMAKTKVINSCLNPVWNEEHSLSLTEPVGVLSLEVFDKDRFKADDKMGK 107 (186)
Q Consensus 30 L~v~i~~a~~L~~~~~~~~dpy~~v~~~~--~~~~T~~~~~~~~P~w~e~~~f~v~~~~~~l~v~v~d~~~~~~d~~lG~ 107 (186)
|.|+|++|++|+. ..+.+||||+++++. .+++|+++.++.||.|||.|.|.+......|.|+|||++..+++++||+
T Consensus 1 l~v~v~~A~~L~~-~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~~~~~~~lG~ 79 (126)
T cd08678 1 LLVKNIKANGLSE-AAGSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELSPNSKELLFEVYDNGKKSDSKFLGL 79 (126)
T ss_pred CEEEEEEecCCCC-CCCCcCCEEEEEECCCCcEEEeEEEecCCCCccCceEEEEeCCCCCEEEEEEEECCCCCCCceEEE
Confidence 5799999999988 668899999999963 5689999999999999999999997655699999999999988999999
Q ss_pred EEEecccccccceeeeEEEecCCCeeeEEEeeCCCCeecccceEEEECCEEEEEEeEEecccceecEEEEEEEEeCC
Q 029885 108 AYLNLQPIISAARLRHLVHVSSGETPLRKIIPDSENCLARESSIICINGEVVQNVWLRLCEVESGEIELKVKIVDAP 184 (186)
Q Consensus 108 ~~v~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~G~l~l~l~~~~~~ 184 (186)
+.+++.++........|+.|.... + ......|+|+++++|++++
T Consensus 80 ~~i~l~~l~~~~~~~~~~~L~~~~------------------------~---------~~~~~~G~l~l~~~~~~~~ 123 (126)
T cd08678 80 AIVPFDELRKNPSGRQIFPLQGRP------------------------Y---------EGDSVSGSITVEFLFMEPA 123 (126)
T ss_pred EEEeHHHhccCCceeEEEEecCCC------------------------C---------CCCCcceEEEEEEEEeccc
Confidence 999999998887777777776430 0 0234689999999998875
No 10
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=99.89 E-value=5.5e-22 Score=137.21 Aligned_cols=113 Identities=37% Similarity=0.640 Sum_probs=97.7
Q ss_pred eEEEEEEEEeEcCCCCC-C------CCCCcEEEEEECCeEEEeeeeeCCCCCeecCeEEEEeeCC-CceEEEEEEEcCCC
Q 029885 28 GQLKVTVVQGKRLVIRD-F------KSSDPYVVLKLGNQMAKTKVINSCLNPVWNEEHSLSLTEP-VGVLSLEVFDKDRF 99 (186)
Q Consensus 28 ~~L~v~i~~a~~L~~~~-~------~~~dpy~~v~~~~~~~~T~~~~~~~~P~w~e~~~f~v~~~-~~~l~v~v~d~~~~ 99 (186)
|.|.|+|++|++|+..+ . +.+||||++++++..++|++++++.+|.|+|.|.|.+... ...|.|+|||++..
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~~P~W~e~f~~~v~~~~~~~l~i~v~d~~~~ 80 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEAVVDEVPGQELEIELFDEDPD 80 (121)
T ss_pred CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECCEeEEccccCCCCCCcccceEEEEeCCCCCCEEEEEEEecCCC
Confidence 57999999999999876 2 5789999999999999999999999999999999998764 34999999999988
Q ss_pred CCCCeeEEEEEecccccccceeeeEEEecCCCeeeEEEeeCCCCeecccceEEEECCEEEEEEeEEecccceecEEEEEE
Q 029885 100 KADDKMGKAYLNLQPIISAARLRHLVHVSSGETPLRKIIPDSENCLARESSIICINGEVVQNVWLRLCEVESGEIELKVK 179 (186)
Q Consensus 100 ~~d~~lG~~~v~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~G~l~l~l~ 179 (186)
++++||.+.+++.++..+.. .+.|++|.....|+|++++|
T Consensus 81 -~~~~iG~~~i~l~~l~~~~~---------------------------------------~~~w~~L~~~~~G~~~~~~~ 120 (121)
T cd08391 81 -KDDFLGRLSIDLGSVEKKGF---------------------------------------IDEWLPLEDVKSGRLHLKLE 120 (121)
T ss_pred -CCCcEEEEEEEHHHhcccCc---------------------------------------cceEEECcCCCCceEEEEEe
Confidence 89999999999998865433 34567777668899999998
Q ss_pred E
Q 029885 180 I 180 (186)
Q Consensus 180 ~ 180 (186)
|
T Consensus 121 ~ 121 (121)
T cd08391 121 W 121 (121)
T ss_pred C
Confidence 7
No 11
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.89 E-value=5.4e-22 Score=138.66 Aligned_cols=100 Identities=26% Similarity=0.420 Sum_probs=87.1
Q ss_pred EEEEEEEEeEcCCCCC-CCCCCcEEEEEECCeEEEeeeeeCCCCCeecCeEEEEeeCCC----ceEEEEEEEcCCCC-CC
Q 029885 29 QLKVTVVQGKRLVIRD-FKSSDPYVVLKLGNQMAKTKVINSCLNPVWNEEHSLSLTEPV----GVLSLEVFDKDRFK-AD 102 (186)
Q Consensus 29 ~L~v~i~~a~~L~~~~-~~~~dpy~~v~~~~~~~~T~~~~~~~~P~w~e~~~f~v~~~~----~~l~v~v~d~~~~~-~d 102 (186)
+|.|+|++|++|+..+ .+.+||||++.+++++++|+++.++.||.|||.|.|.+..+. ..|.|+|||++.++ ++
T Consensus 1 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~~~d 80 (127)
T cd04022 1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSGRRR 80 (127)
T ss_pred CeEEEEEEeeCCCCCCCCCCcCcEEEEEECCEEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCcCCC
Confidence 4899999999999988 789999999999999999999999999999999999987542 37999999999886 79
Q ss_pred CeeEEEEEeccccc-ccceeeeEEEec
Q 029885 103 DKMGKAYLNLQPII-SAARLRHLVHVS 128 (186)
Q Consensus 103 ~~lG~~~v~l~~l~-~~~~~~~~~~l~ 128 (186)
++||++.++++++. .+.....||.|.
T Consensus 81 ~~lG~v~i~l~~l~~~~~~~~~w~~L~ 107 (127)
T cd04022 81 SFLGRVRISGTSFVPPSEAVVQRYPLE 107 (127)
T ss_pred CeeeEEEEcHHHcCCCCCccceEeEee
Confidence 99999999999987 444455666664
No 12
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.88 E-value=7.1e-22 Score=137.27 Aligned_cols=100 Identities=28% Similarity=0.469 Sum_probs=91.9
Q ss_pred EEEEEEEeEc---CCCCC-CCCCCcEEEEEECCeEEEeeeeeCCCCCeecCeEEEEeeCCCceEEEEEEEcCCCC-----
Q 029885 30 LKVTVVQGKR---LVIRD-FKSSDPYVVLKLGNQMAKTKVINSCLNPVWNEEHSLSLTEPVGVLSLEVFDKDRFK----- 100 (186)
Q Consensus 30 L~v~i~~a~~---L~~~~-~~~~dpy~~v~~~~~~~~T~~~~~~~~P~w~e~~~f~v~~~~~~l~v~v~d~~~~~----- 100 (186)
|+|+|++|++ |+.++ .|.+||||+++++.++.+|++++++.||.|||+|.|.+..+...|.|+|||++..+
T Consensus 2 L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~~~~rTk~~~~~~nP~WnE~f~f~v~~~~~~l~v~V~d~d~~~~~~~~ 81 (126)
T cd08379 2 LEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWPVYDPCTVLTVGVFDNSQSHWKEAV 81 (126)
T ss_pred eEEEEEEeECCccccccccCCCCCeeEEEEECCEEeEcCcccCCCCCcceeEEEEEecCCCCEEEEEEEECCCccccccC
Confidence 8999999999 78778 89999999999999999999999999999999999999877669999999998873
Q ss_pred -CCCeeEEEEEecccccccceeeeEEEecC
Q 029885 101 -ADDKMGKAYLNLQPIISAARLRHLVHVSS 129 (186)
Q Consensus 101 -~d~~lG~~~v~l~~l~~~~~~~~~~~l~~ 129 (186)
+|++||++.++++++..+.....|++|..
T Consensus 82 ~~dd~lG~~~i~l~~l~~~~~~~~~~~L~~ 111 (126)
T cd08379 82 QPDVLIGKVRIRLSTLEDDRVYAHSYPLLS 111 (126)
T ss_pred CCCceEEEEEEEHHHccCCCEEeeEEEeEe
Confidence 89999999999999998888888888863
No 13
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=99.88 E-value=1.7e-21 Score=134.93 Aligned_cols=99 Identities=21% Similarity=0.363 Sum_probs=87.9
Q ss_pred EEEEEEEeEcCCCCC--CCCCCcEEEEEECCe-EEEeeeeeCCCCCeecCeEEEEeeCCCceEEEEEEEcCCCCCCCeeE
Q 029885 30 LKVTVVQGKRLVIRD--FKSSDPYVVLKLGNQ-MAKTKVINSCLNPVWNEEHSLSLTEPVGVLSLEVFDKDRFKADDKMG 106 (186)
Q Consensus 30 L~v~i~~a~~L~~~~--~~~~dpy~~v~~~~~-~~~T~~~~~~~~P~w~e~~~f~v~~~~~~l~v~v~d~~~~~~d~~lG 106 (186)
|.|+|++|++|+..+ .+.+||||.+.++.+ .++|++++++.||.|||+|.|.+......|.|.|||++.++++++||
T Consensus 2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~~~~~kT~v~~kt~~P~WnE~F~f~v~~~~~~l~~~v~d~~~~~~~~~iG 81 (121)
T cd08401 2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIPRTFRHLSFYIYDRDVLRRDSVIG 81 (121)
T ss_pred eEEEEEEccCCCCCCCCCCCcCcEEEEEECCccEEEeeEEECCCCCccCCeEEEEcCCCCCEEEEEEEECCCCCCCceEE
Confidence 679999999999874 578999999999765 58999999999999999999999876569999999999999999999
Q ss_pred EEEEecccccccceeeeEEEec
Q 029885 107 KAYLNLQPIISAARLRHLVHVS 128 (186)
Q Consensus 107 ~~~v~l~~l~~~~~~~~~~~l~ 128 (186)
.+.++++++..+...+.|++|.
T Consensus 82 ~~~i~l~~l~~~~~~~~w~~L~ 103 (121)
T cd08401 82 KVAIKKEDLHKYYGKDTWFPLQ 103 (121)
T ss_pred EEEEEHHHccCCCCcEeeEEEE
Confidence 9999999998776667777665
No 14
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=99.87 E-value=7.3e-22 Score=134.77 Aligned_cols=100 Identities=21% Similarity=0.304 Sum_probs=86.0
Q ss_pred CcceEEEEEEEEeEcCCCCCCCCCCcEEEEEECC----eEEEeeeeeCCCCCeecCeEEEEeeCCC---ceEEEEEEEcC
Q 029885 25 QPFGQLKVTVVQGKRLVIRDFKSSDPYVVLKLGN----QMAKTKVINSCLNPVWNEEHSLSLTEPV---GVLSLEVFDKD 97 (186)
Q Consensus 25 ~~~~~L~v~i~~a~~L~~~~~~~~dpy~~v~~~~----~~~~T~~~~~~~~P~w~e~~~f~v~~~~---~~l~v~v~d~~ 97 (186)
+..+.|+|+|++|++|+ . .+.+||||++++.. .+++|++.+++.||.|||+|.|.+...+ ..|.|+|||+|
T Consensus 11 ~~~~~L~V~vikA~~L~-~-~g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~~tL~~~V~d~D 88 (118)
T cd08677 11 KQKAELHVNILEAENIS-V-DAGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPEEESLDGTLTLTLRCCD 88 (118)
T ss_pred CcCCEEEEEEEEecCCC-C-CCCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCHHHhCCcEEEEEEEeCC
Confidence 56789999999999998 3 35589999999953 4689999999999999999999988643 38999999999
Q ss_pred CCCCCCeeEEEEEecccccccceeeeEEE
Q 029885 98 RFKADDKMGKAYLNLQPIISAARLRHLVH 126 (186)
Q Consensus 98 ~~~~d~~lG~~~v~l~~l~~~~~~~~~~~ 126 (186)
.++++++||++.+++.++..+...+.|.+
T Consensus 89 rfs~~d~IG~v~l~l~~~~~~~~~~~W~~ 117 (118)
T cd08677 89 RFSRHSTLGELRLKLADVSMMLGAAQWVD 117 (118)
T ss_pred CCCCCceEEEEEEccccccCCccccchhc
Confidence 99999999999999998876666666643
No 15
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.87 E-value=2.9e-21 Score=134.18 Aligned_cols=95 Identities=31% Similarity=0.499 Sum_probs=84.6
Q ss_pred ceEEEEEEEEeEcCCCCC--CCCCCcEEEEEECC--eEEEeeeeeCCCCCeecCeEEEEeeCCCceEEEEEEEcCCCCCC
Q 029885 27 FGQLKVTVVQGKRLVIRD--FKSSDPYVVLKLGN--QMAKTKVINSCLNPVWNEEHSLSLTEPVGVLSLEVFDKDRFKAD 102 (186)
Q Consensus 27 ~~~L~v~i~~a~~L~~~~--~~~~dpy~~v~~~~--~~~~T~~~~~~~~P~w~e~~~f~v~~~~~~l~v~v~d~~~~~~d 102 (186)
.|.|.|+|++|++|+..+ .+.+|||+++.++. ..++|+++.++.+|.|||.|.|.+......|.|+|||++..++|
T Consensus 1 ~g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~~~~~kT~~~~~~~~P~Wne~~~~~v~~~~~~l~~~v~d~~~~~~d 80 (124)
T cd04044 1 IGVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILVNSLTEPLNLTVYDFNDKRKD 80 (124)
T ss_pred CeEEEEEEEcccCCCcccccCCCCCCeEEEEECCCCcceEeeeecCCCCCcceEEEEEEeCCCCCEEEEEEEecCCCCCC
Confidence 378999999999999765 46789999999977 77999999999999999999999885556999999999998899
Q ss_pred CeeEEEEEeccccccccee
Q 029885 103 DKMGKAYLNLQPIISAARL 121 (186)
Q Consensus 103 ~~lG~~~v~l~~l~~~~~~ 121 (186)
++||.+.+++.++..+...
T Consensus 81 ~~iG~~~~~l~~l~~~~~~ 99 (124)
T cd04044 81 KLIGTAEFDLSSLLQNPEQ 99 (124)
T ss_pred ceeEEEEEEHHHhccCccc
Confidence 9999999999999877554
No 16
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.87 E-value=6.8e-21 Score=136.51 Aligned_cols=101 Identities=30% Similarity=0.418 Sum_probs=88.3
Q ss_pred EEEEEEEeEcCCCCC-CCCCCcEEEEEECCeEEEeeeeeC-CCCCeecCeEEEEeeCCCc-eEEEEEEEcCCCCCCCeeE
Q 029885 30 LKVTVVQGKRLVIRD-FKSSDPYVVLKLGNQMAKTKVINS-CLNPVWNEEHSLSLTEPVG-VLSLEVFDKDRFKADDKMG 106 (186)
Q Consensus 30 L~v~i~~a~~L~~~~-~~~~dpy~~v~~~~~~~~T~~~~~-~~~P~w~e~~~f~v~~~~~-~l~v~v~d~~~~~~d~~lG 106 (186)
|.|+|++|++|+..+ .|.+||||++.++++.++|++..+ +.||.|||.|.|.+..+.. .+.|+|||++..+++++||
T Consensus 2 L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~~~~kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~~~~dd~lG 81 (150)
T cd04019 2 LRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVGPNKDEPLG 81 (150)
T ss_pred EEEEEEEeECCCCCCCCCCCCeEEEEEECCEEeeeEeccCCCCCCcccCcEEEEecCccCCeEEEEEEEecCCCCCCeEE
Confidence 789999999999999 889999999999999999999977 6999999999999976544 8999999999888899999
Q ss_pred EEEEeccccccc----ceeeeEEEecCC
Q 029885 107 KAYLNLQPIISA----ARLRHLVHVSSG 130 (186)
Q Consensus 107 ~~~v~l~~l~~~----~~~~~~~~l~~~ 130 (186)
++.++|+++..+ .....|++|...
T Consensus 82 ~v~i~L~~l~~~~~~~~~~~~W~~L~~~ 109 (150)
T cd04019 82 RAVIPLNDIERRVDDRPVPSRWFSLERP 109 (150)
T ss_pred EEEEEHHHCcccCCCCccCCceEECcCC
Confidence 999999998653 334677777644
No 17
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=99.87 E-value=4.8e-21 Score=132.37 Aligned_cols=94 Identities=31% Similarity=0.548 Sum_probs=81.7
Q ss_pred EEEEEEEeEcCCCCC-CCCCCcEEEEEEC---CeEEEeeeeeCCCCCeecCeEEEEeeCCCc-eEEEEEEEcCCCCCCCe
Q 029885 30 LKVTVVQGKRLVIRD-FKSSDPYVVLKLG---NQMAKTKVINSCLNPVWNEEHSLSLTEPVG-VLSLEVFDKDRFKADDK 104 (186)
Q Consensus 30 L~v~i~~a~~L~~~~-~~~~dpy~~v~~~---~~~~~T~~~~~~~~P~w~e~~~f~v~~~~~-~l~v~v~d~~~~~~d~~ 104 (186)
|.|+|++|++|+..+ .+.+||||++.+. ..+++|++++++.||.|||+|.|.+..... .|.|+|||++.+ +|++
T Consensus 2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~~-~~~~ 80 (119)
T cd04036 2 LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQVKNVLELTVMDEDYV-MDDH 80 (119)
T ss_pred eEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcccCCEEEEEEEECCCC-CCcc
Confidence 789999999999988 7899999999985 356899999999999999999999876533 799999999998 8999
Q ss_pred eEEEEEecccccccceeeeE
Q 029885 105 MGKAYLNLQPIISAARLRHL 124 (186)
Q Consensus 105 lG~~~v~l~~l~~~~~~~~~ 124 (186)
||++.++++++..+.....|
T Consensus 81 iG~~~~~l~~l~~g~~~~~~ 100 (119)
T cd04036 81 LGTVLFDVSKLKLGEKVRVT 100 (119)
T ss_pred cEEEEEEHHHCCCCCcEEEE
Confidence 99999999988666444444
No 18
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=99.87 E-value=6.6e-21 Score=133.12 Aligned_cols=101 Identities=33% Similarity=0.554 Sum_probs=87.4
Q ss_pred eEEEEEEEEeEcCCCCC---CCCCCcEEEEEECCeEEEeeeeeCCCCCeecCeEEEEeeCC-CceEEEEEEEcCCCCCCC
Q 029885 28 GQLKVTVVQGKRLVIRD---FKSSDPYVVLKLGNQMAKTKVINSCLNPVWNEEHSLSLTEP-VGVLSLEVFDKDRFKADD 103 (186)
Q Consensus 28 ~~L~v~i~~a~~L~~~~---~~~~dpy~~v~~~~~~~~T~~~~~~~~P~w~e~~~f~v~~~-~~~l~v~v~d~~~~~~d~ 103 (186)
|.|.|+|++|++|+..+ .+.+||||.+.++...++|++++++.+|.|||+|.|.+... ...|.|+|||++..++++
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~~~~kT~~~~~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~~~~~~ 80 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIFSAQNQLLKLILWDKDRFAGKD 80 (128)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEECCEEEecceecCCcCCccCCcEEEEecCCCCCEEEEEEEECCCCCCCC
Confidence 57999999999999876 46889999999999999999999999999999999999873 459999999999988899
Q ss_pred eeEEEEEecccccc---cceeeeEEEec
Q 029885 104 KMGKAYLNLQPIIS---AARLRHLVHVS 128 (186)
Q Consensus 104 ~lG~~~v~l~~l~~---~~~~~~~~~l~ 128 (186)
+||++.+++.++.. ......|+.|.
T Consensus 81 ~lG~~~i~l~~~~~~~~~~~~~~w~~L~ 108 (128)
T cd04024 81 YLGEFDIALEEVFADGKTGQSDKWITLK 108 (128)
T ss_pred cceEEEEEHHHhhcccccCccceeEEcc
Confidence 99999999999873 23345565555
No 19
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=99.87 E-value=1.1e-20 Score=130.37 Aligned_cols=99 Identities=31% Similarity=0.487 Sum_probs=87.5
Q ss_pred eEEEEEEEEeEcCCCCC-CCCCCcEEEEEECCeEEEeeeeeCCCCCeecCeEEEEeeCCCceEEEEEEEcCCCCCCCeeE
Q 029885 28 GQLKVTVVQGKRLVIRD-FKSSDPYVVLKLGNQMAKTKVINSCLNPVWNEEHSLSLTEPVGVLSLEVFDKDRFKADDKMG 106 (186)
Q Consensus 28 ~~L~v~i~~a~~L~~~~-~~~~dpy~~v~~~~~~~~T~~~~~~~~P~w~e~~~f~v~~~~~~l~v~v~d~~~~~~d~~lG 106 (186)
|.|.|+|++|++|+..+ .+.+|||++++++...++|++++++.||.|+|+|.|.+......+.|+|||++..+++++||
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~~~~~~~~~~l~~~v~d~~~~~~~~~iG 80 (119)
T cd08377 1 GFLQVKVIRASGLAAADIGGKSDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPIKDIHDVLEVTVYDEDKDKKPEFLG 80 (119)
T ss_pred CEEEEEEEeeeCCCCCCCCCCCCcEEEEEECCEeeecceecCCcCCccCcEEEEEecCcCCEEEEEEEECCCCCCCceee
Confidence 57999999999999988 88899999999998889999999999999999999998775569999999999988999999
Q ss_pred EEEEecccccccceeeeEEEec
Q 029885 107 KAYLNLQPIISAARLRHLVHVS 128 (186)
Q Consensus 107 ~~~v~l~~l~~~~~~~~~~~l~ 128 (186)
++.+++.++..+. ..|+.|.
T Consensus 81 ~~~~~l~~~~~~~--~~~~~l~ 100 (119)
T cd08377 81 KVAIPLLSIKNGE--RKWYALK 100 (119)
T ss_pred EEEEEHHHCCCCC--ceEEECc
Confidence 9999999886543 3455554
No 20
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=99.87 E-value=8.7e-21 Score=131.77 Aligned_cols=102 Identities=27% Similarity=0.432 Sum_probs=92.1
Q ss_pred EEEEEEEEeEcCCCCC-CCCCCcEEEEEECCeEEEeeeeeCCCCCeecCeEEEEeeCCC-ceEEEEEEEcCCCCCCCeeE
Q 029885 29 QLKVTVVQGKRLVIRD-FKSSDPYVVLKLGNQMAKTKVINSCLNPVWNEEHSLSLTEPV-GVLSLEVFDKDRFKADDKMG 106 (186)
Q Consensus 29 ~L~v~i~~a~~L~~~~-~~~~dpy~~v~~~~~~~~T~~~~~~~~P~w~e~~~f~v~~~~-~~l~v~v~d~~~~~~d~~lG 106 (186)
.|+|+|++|++|+..+ .+.+|||++++++...++|++++++.||.|||+|.|.+.... ..|.|+|||++.++++++||
T Consensus 1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~~~~~~~iG 80 (123)
T cd04025 1 RLRCHVLEARDLAPKDRNGTSDPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEGADSPLSVEVWDWDLVSKNDFLG 80 (123)
T ss_pred CEEEEEEEeeCCCCCCCCCCcCceEEEEECCEEEeceeecCCCCCccCcEEEEEcCCCCCCEEEEEEEECCCCCCCcEeE
Confidence 4899999999999988 788999999999988999999999999999999999998764 48999999999998999999
Q ss_pred EEEEecccccccceeeeEEEecCC
Q 029885 107 KAYLNLQPIISAARLRHLVHVSSG 130 (186)
Q Consensus 107 ~~~v~l~~l~~~~~~~~~~~l~~~ 130 (186)
.+.++++++..+...+.|+.|...
T Consensus 81 ~~~~~l~~l~~~~~~~~w~~L~~~ 104 (123)
T cd04025 81 KVVFSIQTLQQAKQEEGWFRLLPD 104 (123)
T ss_pred EEEEEHHHcccCCCCCCEEECCCC
Confidence 999999999887777888877643
No 21
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.86 E-value=5.6e-21 Score=131.69 Aligned_cols=102 Identities=24% Similarity=0.247 Sum_probs=88.6
Q ss_pred EEEEEEEEeEcCCCCCCCCCCcEEEEEE-C----C--eEEEeeeeeCCCCCeecCeEEEEeeCCC----ceEEEEEEEcC
Q 029885 29 QLKVTVVQGKRLVIRDFKSSDPYVVLKL-G----N--QMAKTKVINSCLNPVWNEEHSLSLTEPV----GVLSLEVFDKD 97 (186)
Q Consensus 29 ~L~v~i~~a~~L~~~~~~~~dpy~~v~~-~----~--~~~~T~~~~~~~~P~w~e~~~f~v~~~~----~~l~v~v~d~~ 97 (186)
+|+|.|++|++|+..+.|.+|||+++++ + . ++++|+++.++.||.|||+|.|.+.... ..|.|.|||++
T Consensus 1 kL~V~Vi~A~~L~~~d~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~d 80 (120)
T cd08395 1 KVTVKVVAANDLKWQTTGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDYC 80 (120)
T ss_pred CEEEEEEECcCCCcccCCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEec
Confidence 4899999999998877888999999998 2 2 3578999999999999999999998532 26899999999
Q ss_pred CCCCCCeeEEEEEecccccccceeeeEEEecCC
Q 029885 98 RFKADDKMGKAYLNLQPIISAARLRHLVHVSSG 130 (186)
Q Consensus 98 ~~~~d~~lG~~~v~l~~l~~~~~~~~~~~l~~~ 130 (186)
..+++++||++.+++.++..++....|++|...
T Consensus 81 ~~~~dd~IG~~~l~l~~~~~~~~~~~w~~L~~~ 113 (120)
T cd08395 81 FARDDRLVGVTVLQLRDIAQAGSCACWLPLGRR 113 (120)
T ss_pred ccCCCCEEEEEEEEHHHCcCCCcEEEEEECcCc
Confidence 887899999999999999999888889888654
No 22
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.86 E-value=1e-20 Score=133.04 Aligned_cols=91 Identities=36% Similarity=0.587 Sum_probs=81.6
Q ss_pred EEEEEEEEeEcCCCCC-CCCCCcEEEEEECCe-------EEEeeeeeCCCCCeecCeEEEEeeCCCceEEEEEEEcCCCC
Q 029885 29 QLKVTVVQGKRLVIRD-FKSSDPYVVLKLGNQ-------MAKTKVINSCLNPVWNEEHSLSLTEPVGVLSLEVFDKDRFK 100 (186)
Q Consensus 29 ~L~v~i~~a~~L~~~~-~~~~dpy~~v~~~~~-------~~~T~~~~~~~~P~w~e~~~f~v~~~~~~l~v~v~d~~~~~ 100 (186)
.|+|+|++|++|+..+ .+.+|||+++++... .++|++++++.+|.|||+|.|.+......|.++|||++.++
T Consensus 1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~~~ 80 (133)
T cd04033 1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPREHRLLFEVFDENRLT 80 (133)
T ss_pred CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCCCCEEEEEEEECCCCC
Confidence 3889999999999998 889999999999643 47999999999999999999999876568999999999998
Q ss_pred CCCeeEEEEEecccccccc
Q 029885 101 ADDKMGKAYLNLQPIISAA 119 (186)
Q Consensus 101 ~d~~lG~~~v~l~~l~~~~ 119 (186)
++++||++.+++.++....
T Consensus 81 ~~~~iG~~~i~l~~l~~~~ 99 (133)
T cd04033 81 RDDFLGQVEVPLNNLPTET 99 (133)
T ss_pred CCCeeEEEEEEHHHCCCcC
Confidence 9999999999999987653
No 23
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=99.85 E-value=5e-20 Score=128.52 Aligned_cols=100 Identities=23% Similarity=0.424 Sum_probs=85.1
Q ss_pred ceEEEEEEEEeEcCCCCCCCCCCcEEEEEECCeE-EEeeeeeCCCCCeecCeEEEEeeCCC-ceEEEEEEEcCCCCCCCe
Q 029885 27 FGQLKVTVVQGKRLVIRDFKSSDPYVVLKLGNQM-AKTKVINSCLNPVWNEEHSLSLTEPV-GVLSLEVFDKDRFKADDK 104 (186)
Q Consensus 27 ~~~L~v~i~~a~~L~~~~~~~~dpy~~v~~~~~~-~~T~~~~~~~~P~w~e~~~f~v~~~~-~~l~v~v~d~~~~~~d~~ 104 (186)
...|+|.|++|++|+.. +.+||||++.+++.. .+|++ .++.||.|||+|.|.+..+. ..+.|.|||++..++|++
T Consensus 3 ~~~L~V~Vi~A~~L~~~--~~~DPYv~v~l~~~~~~kT~v-~~~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~~~~d~~ 79 (126)
T cd08400 3 VRSLQLNVLEAHKLPVK--HVPHPYCVISLNEVKVARTKV-REGPNPVWSEEFVFDDLPPDVNSFTISLSNKAKRSKDSE 79 (126)
T ss_pred eeEEEEEEEEeeCCCCC--CCCCeeEEEEECCEeEEEeec-CCCCCCccCCEEEEecCCCCcCEEEEEEEECCCCCCCCe
Confidence 45799999999999875 478999999998744 68887 46899999999999876654 378999999999999999
Q ss_pred eEEEEEecccccccceeeeEEEecC
Q 029885 105 MGKAYLNLQPIISAARLRHLVHVSS 129 (186)
Q Consensus 105 lG~~~v~l~~l~~~~~~~~~~~l~~ 129 (186)
||.+.++|+++..+...+.|+.|..
T Consensus 80 iG~v~i~l~~l~~~~~~~~W~~L~~ 104 (126)
T cd08400 80 IAEVTVQLSKLQNGQETDEWYPLSS 104 (126)
T ss_pred EEEEEEEHhHccCCCcccEeEEccc
Confidence 9999999999988877777777753
No 24
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=99.85 E-value=4.6e-20 Score=133.40 Aligned_cols=102 Identities=27% Similarity=0.474 Sum_probs=88.9
Q ss_pred ceEEEEEEEEeEcCCCCC-------------------------------CCCCCcEEEEEECCeE-EEeeeeeCCCCCee
Q 029885 27 FGQLKVTVVQGKRLVIRD-------------------------------FKSSDPYVVLKLGNQM-AKTKVINSCLNPVW 74 (186)
Q Consensus 27 ~~~L~v~i~~a~~L~~~~-------------------------------~~~~dpy~~v~~~~~~-~~T~~~~~~~~P~w 74 (186)
.|.|.|+|++|++|+.++ .|.+||||++++++.+ .+|+++.++.||.|
T Consensus 6 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~~rT~v~~~~~nP~W 85 (158)
T cd04015 6 HGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARVARTRVIENSENPVW 85 (158)
T ss_pred eeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEeeEEEEeCCCCCCcc
Confidence 589999999999999865 3457999999998755 69999999999999
Q ss_pred cCeEEEEeeCCCceEEEEEEEcCCCCCCCeeEEEEEecccccccceeeeEEEecC
Q 029885 75 NEEHSLSLTEPVGVLSLEVFDKDRFKADDKMGKAYLNLQPIISAARLRHLVHVSS 129 (186)
Q Consensus 75 ~e~~~f~v~~~~~~l~v~v~d~~~~~~d~~lG~~~v~l~~l~~~~~~~~~~~l~~ 129 (186)
||+|.|.+......|.|+|||++.+ .+++||.+.++++++..+...+.|++|..
T Consensus 86 nE~F~~~~~~~~~~l~~~V~d~d~~-~~~~IG~~~i~l~~l~~g~~~~~w~~L~~ 139 (158)
T cd04015 86 NESFHIYCAHYASHVEFTVKDNDVV-GAQLIGRAYIPVEDLLSGEPVEGWLPILD 139 (158)
T ss_pred ceEEEEEccCCCCEEEEEEEeCCCc-CCcEEEEEEEEhHHccCCCCcceEEECcC
Confidence 9999999877666999999999988 46899999999999988877778877754
No 25
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=99.85 E-value=1e-20 Score=131.22 Aligned_cols=101 Identities=26% Similarity=0.314 Sum_probs=88.2
Q ss_pred ceEEEEEEEEeEcCCCCCCCCCCcEEEEEEC-----CeEEEeeeeeCCCCCeecCeEEEEe-eC---CCceEEEEEEEcC
Q 029885 27 FGQLKVTVVQGKRLVIRDFKSSDPYVVLKLG-----NQMAKTKVINSCLNPVWNEEHSLSL-TE---PVGVLSLEVFDKD 97 (186)
Q Consensus 27 ~~~L~v~i~~a~~L~~~~~~~~dpy~~v~~~-----~~~~~T~~~~~~~~P~w~e~~~f~v-~~---~~~~l~v~v~d~~ 97 (186)
.+.|.|.|++|++|+..+.+.+||||++++. ..+++|++++++.||.|||+|.|.+ .. ....|.|+|||++
T Consensus 12 ~~~L~V~Vi~A~~L~~~~~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d~d 91 (122)
T cd08381 12 NGTLFVMVMHAKNLPLLDGSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSHD 91 (122)
T ss_pred CCEEEEEEEEeeCCCCCCCCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHHhCCCEEEEEEEeCC
Confidence 4789999999999998886789999999995 3468999999999999999999997 32 2348999999999
Q ss_pred CCCCCCeeEEEEEecccccccceeeeEEEe
Q 029885 98 RFKADDKMGKAYLNLQPIISAARLRHLVHV 127 (186)
Q Consensus 98 ~~~~d~~lG~~~v~l~~l~~~~~~~~~~~l 127 (186)
.++++++||++.++|.++........||.|
T Consensus 92 ~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L 121 (122)
T cd08381 92 SLVENEFLGGVCIPLKKLDLSQETEKWYPL 121 (122)
T ss_pred CCcCCcEEEEEEEeccccccCCCccceEEC
Confidence 998999999999999999877777777765
No 26
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.85 E-value=1.7e-20 Score=133.30 Aligned_cols=104 Identities=23% Similarity=0.295 Sum_probs=90.4
Q ss_pred ceEEEEEEEEeEcCCCCC--CCCCCcEEEEEECC-----eEEEeeeeeCCCCCeecCeEEEEeeCCCceEEEEEE-EcCC
Q 029885 27 FGQLKVTVVQGKRLVIRD--FKSSDPYVVLKLGN-----QMAKTKVINSCLNPVWNEEHSLSLTEPVGVLSLEVF-DKDR 98 (186)
Q Consensus 27 ~~~L~v~i~~a~~L~~~~--~~~~dpy~~v~~~~-----~~~~T~~~~~~~~P~w~e~~~f~v~~~~~~l~v~v~-d~~~ 98 (186)
.+.|.|.|++|+||+..+ .+.+||||++++.. .+++|++++++.||.|||+|.|.+......|.|+|| |++.
T Consensus 28 ~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~l~~~~L~v~V~~d~~~ 107 (146)
T cd04028 28 KGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVSPTGKTLQVIVWGDYGR 107 (146)
T ss_pred CCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEcCCCCEEEEEEEeCCCC
Confidence 589999999999999864 67899999999932 368999999999999999999999855559999999 5788
Q ss_pred CCCCCeeEEEEEecccccccceeeeEEEecCC
Q 029885 99 FKADDKMGKAYLNLQPIISAARLRHLVHVSSG 130 (186)
Q Consensus 99 ~~~d~~lG~~~v~l~~l~~~~~~~~~~~l~~~ 130 (186)
++++++||.+.++|+++..+.....||.|...
T Consensus 108 ~~~~~~iG~~~i~L~~l~~~~~~~~Wy~L~~~ 139 (146)
T cd04028 108 MDKKVFMGVAQILLDDLDLSNLVIGWYKLFPT 139 (146)
T ss_pred CCCCceEEEEEEEcccccCCCCceeEEecCCc
Confidence 88899999999999999777777788877644
No 27
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=99.85 E-value=1.7e-20 Score=130.52 Aligned_cols=109 Identities=30% Similarity=0.445 Sum_probs=95.9
Q ss_pred cccceeeeccccccCCcceEEEEEEEEeEcCCCCCCCCCCcEEEEEECCeEEEeeeeeCCCCCeecCeEEEEeeC--CCc
Q 029885 10 CQVLKAIHLRNCIMRQPFGQLKVTVVQGKRLVIRDFKSSDPYVVLKLGNQMAKTKVINSCLNPVWNEEHSLSLTE--PVG 87 (186)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~L~v~i~~a~~L~~~~~~~~dpy~~v~~~~~~~~T~~~~~~~~P~w~e~~~f~v~~--~~~ 87 (186)
|.....++++..+.....+.|+|+|++|++|+....+.+|||+++++++++++|++++++.||.|||+|.|.... ...
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~L~V~V~~A~~L~~d~~g~~DPYVkV~~~~~~~kT~vi~~t~nPvWNE~F~f~~~~~~~~~ 89 (127)
T cd04032 10 CSSSPNVNSNCCPTRRGLATLTVTVLRATGLWGDYFTSTDGYVKVFFGGQEKRTEVIWNNNNPRWNATFDFGSVELSPGG 89 (127)
T ss_pred ccCCCCcCCCcCcCcCCcEEEEEEEEECCCCCcCcCCCCCeEEEEEECCccccCceecCCCCCcCCCEEEEecccCCCCC
Confidence 677888899988888999999999999999984227789999999999889999999999999999999997533 234
Q ss_pred eEEEEEEEcCCCCCCCeeEEEEEeccccccc
Q 029885 88 VLSLEVFDKDRFKADDKMGKAYLNLQPIISA 118 (186)
Q Consensus 88 ~l~v~v~d~~~~~~d~~lG~~~v~l~~l~~~ 118 (186)
.|.|+|||++.+++|++||.+.+++.....+
T Consensus 90 ~L~v~V~D~d~~s~dd~IG~~~i~l~~~~~~ 120 (127)
T cd04032 90 KLRFEVWDRDNGWDDDLLGTCSVVPEAGVHE 120 (127)
T ss_pred EEEEEEEeCCCCCCCCeeEEEEEEecCCcee
Confidence 9999999999999999999999999966533
No 28
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=99.85 E-value=6.2e-20 Score=128.06 Aligned_cols=90 Identities=22% Similarity=0.367 Sum_probs=82.4
Q ss_pred ceEEEEEEEEeEcCCCCC-CCCCCcEEEEEECCeEEEeeeeeCCCCCeecCeEEEEeeCCCceEEEEEEEcCCCCCCCee
Q 029885 27 FGQLKVTVVQGKRLVIRD-FKSSDPYVVLKLGNQMAKTKVINSCLNPVWNEEHSLSLTEPVGVLSLEVFDKDRFKADDKM 105 (186)
Q Consensus 27 ~~~L~v~i~~a~~L~~~~-~~~~dpy~~v~~~~~~~~T~~~~~~~~P~w~e~~~f~v~~~~~~l~v~v~d~~~~~~d~~l 105 (186)
...|+|+|++|++|...+ .+.+||||++.++++.++|++++++.+|.|||.|.|.+......|.|+|||++.. +|++|
T Consensus 2 ~~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~i~V~d~~~~-~d~~l 80 (126)
T cd04046 2 QVVTQVHVHSAEGLSKQDSGGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQAIFYRKKPRSPIKIQVWNSNLL-CDEFL 80 (126)
T ss_pred cEEEEEEEEeCcCCCCCCCCCCcCccEEEEECCEEEEeCccCCCCCCcccceEEEEecCCCCEEEEEEEECCCC-CCCce
Confidence 478999999999999988 8899999999999999999999999999999999999887766999999999987 58999
Q ss_pred EEEEEecccccc
Q 029885 106 GKAYLNLQPIIS 117 (186)
Q Consensus 106 G~~~v~l~~l~~ 117 (186)
|.+.+++.++..
T Consensus 81 G~~~~~l~~~~~ 92 (126)
T cd04046 81 GQATLSADPNDS 92 (126)
T ss_pred EEEEEecccCCC
Confidence 999999987643
No 29
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=99.85 E-value=3e-20 Score=129.43 Aligned_cols=104 Identities=26% Similarity=0.336 Sum_probs=90.9
Q ss_pred CCcceEEEEEEEEeEcCCCCC--CCCCCcEEEEEEC-----CeEEEeeeeeCCCCCeecCeEEEEeeCC---CceEEEEE
Q 029885 24 RQPFGQLKVTVVQGKRLVIRD--FKSSDPYVVLKLG-----NQMAKTKVINSCLNPVWNEEHSLSLTEP---VGVLSLEV 93 (186)
Q Consensus 24 ~~~~~~L~v~i~~a~~L~~~~--~~~~dpy~~v~~~-----~~~~~T~~~~~~~~P~w~e~~~f~v~~~---~~~l~v~v 93 (186)
.+..+.|.|.|++|++|+..+ .+.+|||+++++. ..+++|++++++.||.|||+|.|.+... ...|.|+|
T Consensus 11 ~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~l~~~~L~~~V 90 (125)
T cd04029 11 DYKTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHSQLETRTLQLSV 90 (125)
T ss_pred ECCCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHHHhCCCEEEEEE
Confidence 356788999999999999876 5789999999983 2357999999999999999999998753 34899999
Q ss_pred EEcCCCCCCCeeEEEEEecccccccceeeeEEEe
Q 029885 94 FDKDRFKADDKMGKAYLNLQPIISAARLRHLVHV 127 (186)
Q Consensus 94 ~d~~~~~~d~~lG~~~v~l~~l~~~~~~~~~~~l 127 (186)
||++.++++++||++.+++.++......+.|++|
T Consensus 91 ~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~l 124 (125)
T cd04029 91 WHYDRFGRNTFLGEVEIPLDSWNFDSQHEECLPL 124 (125)
T ss_pred EECCCCCCCcEEEEEEEeCCcccccCCcccEEEC
Confidence 9999999999999999999999888888888776
No 30
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=99.85 E-value=7e-20 Score=126.91 Aligned_cols=99 Identities=31% Similarity=0.544 Sum_probs=85.2
Q ss_pred EEEEEEEeEcCCCCC-CCCCCcEEEEEECCeE-EEeeeeeCCCCCeecCeEEEEeeCCCceEEEEEEEcCCCCCCCeeEE
Q 029885 30 LKVTVVQGKRLVIRD-FKSSDPYVVLKLGNQM-AKTKVINSCLNPVWNEEHSLSLTEPVGVLSLEVFDKDRFKADDKMGK 107 (186)
Q Consensus 30 L~v~i~~a~~L~~~~-~~~~dpy~~v~~~~~~-~~T~~~~~~~~P~w~e~~~f~v~~~~~~l~v~v~d~~~~~~d~~lG~ 107 (186)
|.|+|++|++|+..+ .+.+||||++.+++.. .+|++++++.||.|||.|.|.+......|.|+|||++.+++|++||+
T Consensus 2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~~~~~l~v~v~d~~~~~~d~~iG~ 81 (121)
T cd04054 2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHLPPGFHTVSFYVLDEDTLSRDDVIGK 81 (121)
T ss_pred EEEEEEEeeCCcCCCCCCCCCceEEEEECCEeeeeeeeEcCCCCCcccceEEEeeCCCCCEEEEEEEECCCCCCCCEEEE
Confidence 789999999999999 8899999999997654 79999999999999999999987765699999999999999999999
Q ss_pred EEEecccccccc-eeeeEEEec
Q 029885 108 AYLNLQPIISAA-RLRHLVHVS 128 (186)
Q Consensus 108 ~~v~l~~l~~~~-~~~~~~~l~ 128 (186)
+.++++++.... ..+.|+.|.
T Consensus 82 ~~~~~~~~~~~~~~~~~W~~L~ 103 (121)
T cd04054 82 VSLTREVISAHPRGIDGWMNLT 103 (121)
T ss_pred EEEcHHHhccCCCCCCcEEECe
Confidence 999998776432 244555553
No 31
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=99.84 E-value=1.5e-20 Score=131.02 Aligned_cols=103 Identities=27% Similarity=0.347 Sum_probs=89.5
Q ss_pred CcceEEEEEEEEeEcCCCCC-C-CCCCcEEEEEEC-----CeEEEeeeeeCCCCCeecCeEEEEeeCC---CceEEEEEE
Q 029885 25 QPFGQLKVTVVQGKRLVIRD-F-KSSDPYVVLKLG-----NQMAKTKVINSCLNPVWNEEHSLSLTEP---VGVLSLEVF 94 (186)
Q Consensus 25 ~~~~~L~v~i~~a~~L~~~~-~-~~~dpy~~v~~~-----~~~~~T~~~~~~~~P~w~e~~~f~v~~~---~~~l~v~v~ 94 (186)
+..+.|.|.|++|++|+.++ . +.+|||+++++. ..+++|++++++.||.|||+|.|.+... ...|.++||
T Consensus 12 ~~~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~~l~~~~L~~~V~ 91 (125)
T cd08393 12 PKLRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVEREELPTRVLNLSVW 91 (125)
T ss_pred CCCCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHHHhCCCEEEEEEE
Confidence 44578999999999999998 5 789999999993 2357999999999999999999998743 248999999
Q ss_pred EcCCCCCCCeeEEEEEecccccccceeeeEEEe
Q 029885 95 DKDRFKADDKMGKAYLNLQPIISAARLRHLVHV 127 (186)
Q Consensus 95 d~~~~~~d~~lG~~~v~l~~l~~~~~~~~~~~l 127 (186)
|++.++++++||++.++|.++........|++|
T Consensus 92 d~~~~~~~~~iG~~~i~L~~~~~~~~~~~W~~L 124 (125)
T cd08393 92 HRDSLGRNSFLGEVEVDLGSWDWSNTQPTWYPL 124 (125)
T ss_pred eCCCCCCCcEeEEEEEecCccccCCCCcceEEC
Confidence 999999999999999999999877777777765
No 32
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.84 E-value=1.4e-19 Score=127.28 Aligned_cols=114 Identities=25% Similarity=0.462 Sum_probs=96.0
Q ss_pred ceEEEEEEEEeEcCCCCC-C----------CCCCcEEEEEECCeE-EEeeeeeCCCCCeecCeEEEEeeCCCceEEEEEE
Q 029885 27 FGQLKVTVVQGKRLVIRD-F----------KSSDPYVVLKLGNQM-AKTKVINSCLNPVWNEEHSLSLTEPVGVLSLEVF 94 (186)
Q Consensus 27 ~~~L~v~i~~a~~L~~~~-~----------~~~dpy~~v~~~~~~-~~T~~~~~~~~P~w~e~~~f~v~~~~~~l~v~v~ 94 (186)
.|.|.|+|++|++|+..+ . +.+||||++.++++. .+|+++.++.+|.|||+|.|.+.. ...|.|.||
T Consensus 3 ~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~-~~~l~~~v~ 81 (132)
T cd04014 3 TGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKPKTNSPVWNEEFTTEVHN-GRNLELTVF 81 (132)
T ss_pred ceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEEeEEeEcCCCCCCCcceeEEEEcCC-CCEEEEEEE
Confidence 478999999999998877 2 578999999998765 689999999999999999999974 368999999
Q ss_pred EcCCCCCCCeeEEEEEeccccccc--ceeeeEEEecCCCeeeEEEeeCCCCeecccceEEEECCEEEEEEeEEeccccee
Q 029885 95 DKDRFKADDKMGKAYLNLQPIISA--ARLRHLVHVSSGETPLRKIIPDSENCLARESSIICINGEVVQNVWLRLCEVESG 172 (186)
Q Consensus 95 d~~~~~~d~~lG~~~v~l~~l~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~G 172 (186)
|++.++++++||++.++|+++... .. .+.|+.|+ +.|
T Consensus 82 d~~~~~~~~~iG~~~i~l~~l~~~~~~~---------------------------------------~~~w~~L~--~~G 120 (132)
T cd04014 82 HDAAIGPDDFVANCTISFEDLIQRGSGS---------------------------------------FDLWVDLE--PQG 120 (132)
T ss_pred eCCCCCCCceEEEEEEEhHHhcccCCCc---------------------------------------ccEEEEcc--CCc
Confidence 999888899999999999988663 22 34566666 679
Q ss_pred cEEEEEEEEe
Q 029885 173 EIELKVKIVD 182 (186)
Q Consensus 173 ~l~l~l~~~~ 182 (186)
+|+++++|..
T Consensus 121 ~l~l~~~~~~ 130 (132)
T cd04014 121 KLHVKIELKG 130 (132)
T ss_pred EEEEEEEEec
Confidence 9999998864
No 33
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=99.84 E-value=5.9e-20 Score=124.69 Aligned_cols=93 Identities=25% Similarity=0.411 Sum_probs=83.0
Q ss_pred eEEEEEEEEeEcCCCCC-C----CCCCcEEEEEECCeEEEeeeeeCCCCCeecCeEEEEeeCCCc--eEEEEEEEcCCCC
Q 029885 28 GQLKVTVVQGKRLVIRD-F----KSSDPYVVLKLGNQMAKTKVINSCLNPVWNEEHSLSLTEPVG--VLSLEVFDKDRFK 100 (186)
Q Consensus 28 ~~L~v~i~~a~~L~~~~-~----~~~dpy~~v~~~~~~~~T~~~~~~~~P~w~e~~~f~v~~~~~--~l~v~v~d~~~~~ 100 (186)
|.|.|+|++|++|+..+ . +.+|||++++++.+.++|++++++.||.|||.|.|.+..... .|.|+|||++.++
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~~~~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d~~~ 80 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGRRVFRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKDKFS 80 (108)
T ss_pred CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECCEeEeeeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECCCCC
Confidence 67999999999999876 2 358999999999889999999999999999999999875433 7999999999999
Q ss_pred CCCeeEEEEEecccccccce
Q 029885 101 ADDKMGKAYLNLQPIISAAR 120 (186)
Q Consensus 101 ~d~~lG~~~v~l~~l~~~~~ 120 (186)
+|++||++.++|+++..+..
T Consensus 81 ~dd~IG~~~l~L~~l~~~~~ 100 (108)
T cd04039 81 FNDYVATGSLSVQELLNAAP 100 (108)
T ss_pred CCcceEEEEEEHHHHHhhCC
Confidence 99999999999999987753
No 34
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=99.84 E-value=6.1e-20 Score=127.70 Aligned_cols=104 Identities=24% Similarity=0.424 Sum_probs=91.9
Q ss_pred CcceEEEEEEEEeEcCCCCC-CCCCCcEEEEEEC---CeEEEeeeeeCCCCCeecCeEEEEeeCC---CceEEEEEEEcC
Q 029885 25 QPFGQLKVTVVQGKRLVIRD-FKSSDPYVVLKLG---NQMAKTKVINSCLNPVWNEEHSLSLTEP---VGVLSLEVFDKD 97 (186)
Q Consensus 25 ~~~~~L~v~i~~a~~L~~~~-~~~~dpy~~v~~~---~~~~~T~~~~~~~~P~w~e~~~f~v~~~---~~~l~v~v~d~~ 97 (186)
+..+.|.|+|++|++|+..+ .+.+|||+++++. ...++|++++++.+|.|+|+|.|.+... ...|.++|||++
T Consensus 13 ~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~i~V~d~~ 92 (124)
T cd08387 13 KDMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVPPQELPKRTLEVLLYDFD 92 (124)
T ss_pred CCCCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEeCCHHHhCCCEEEEEEEECC
Confidence 45689999999999999988 8889999999983 3468999999999999999999998754 248999999999
Q ss_pred CCCCCCeeEEEEEecccccccceeeeEEEec
Q 029885 98 RFKADDKMGKAYLNLQPIISAARLRHLVHVS 128 (186)
Q Consensus 98 ~~~~d~~lG~~~v~l~~l~~~~~~~~~~~l~ 128 (186)
.++++++||++.++++++..+.....|+.|.
T Consensus 93 ~~~~~~~iG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08387 93 QFSRDECIGVVELPLAEVDLSEKLDLWRKIQ 123 (124)
T ss_pred CCCCCceeEEEEEecccccCCCCcceEEECc
Confidence 9989999999999999998877888887764
No 35
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.84 E-value=6.2e-20 Score=127.15 Aligned_cols=85 Identities=35% Similarity=0.521 Sum_probs=77.4
Q ss_pred EEEEEEEeEcCCCCCCCCCCcEEEEEECCeEEEeeeeeCCCCCeecCeEEEEeeCC-CceEEEEEEEcCCCCCCCeeEEE
Q 029885 30 LKVTVVQGKRLVIRDFKSSDPYVVLKLGNQMAKTKVINSCLNPVWNEEHSLSLTEP-VGVLSLEVFDKDRFKADDKMGKA 108 (186)
Q Consensus 30 L~v~i~~a~~L~~~~~~~~dpy~~v~~~~~~~~T~~~~~~~~P~w~e~~~f~v~~~-~~~l~v~v~d~~~~~~d~~lG~~ 108 (186)
|.|+|++|++|+.. .+||||++.++....+|++++++.||.|||+|.|.+... ...|.++|||++.. ++++||++
T Consensus 2 L~V~Vi~a~~L~~~---~~Dpyv~v~l~~~~~kT~v~~~t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~~-~~~~lG~~ 77 (121)
T cd08378 2 LYVRVVKARGLPAN---SNDPVVEVKLGNYKGSTKAIERTSNPEWNQVFAFSKDRLQGSTLEVSVWDKDKA-KDDFLGGV 77 (121)
T ss_pred EEEEEEEecCCCcc---cCCCEEEEEECCccccccccCCCCCCccceEEEEEcCCCcCCEEEEEEEeCCCC-cCceeeeE
Confidence 78999999999887 789999999999899999999999999999999998764 34899999999987 78999999
Q ss_pred EEeccccccc
Q 029885 109 YLNLQPIISA 118 (186)
Q Consensus 109 ~v~l~~l~~~ 118 (186)
.++++++...
T Consensus 78 ~i~l~~l~~~ 87 (121)
T cd08378 78 CFDLSEVPTR 87 (121)
T ss_pred EEEhHhCcCC
Confidence 9999998653
No 36
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=99.84 E-value=8e-20 Score=123.53 Aligned_cols=97 Identities=28% Similarity=0.446 Sum_probs=86.0
Q ss_pred EEEEEEEeEcCCCCC-CCCCCcEEEEEECCeEEEeeeeeCCCCCeecCeEEEEeeCCCc-eEEEEEEEcCCCCCCCeeEE
Q 029885 30 LKVTVVQGKRLVIRD-FKSSDPYVVLKLGNQMAKTKVINSCLNPVWNEEHSLSLTEPVG-VLSLEVFDKDRFKADDKMGK 107 (186)
Q Consensus 30 L~v~i~~a~~L~~~~-~~~~dpy~~v~~~~~~~~T~~~~~~~~P~w~e~~~f~v~~~~~-~l~v~v~d~~~~~~d~~lG~ 107 (186)
|.|+|++|++|+..+ .+.+||||+++++++.++|+++.++.+|.|||.|.|.+..+.. .|.|+|||++. +++||+
T Consensus 2 L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~~---~~~iG~ 78 (105)
T cd04050 2 LFVYLDSAKNLPLAKSTKEPSPYVELTVGKTTQKSKVKERTNNPVWEEGFTFLVRNPENQELEIEVKDDKT---GKSLGS 78 (105)
T ss_pred EEEEEeeecCCCCcccCCCCCcEEEEEECCEEEeCccccCCCCCcccceEEEEeCCCCCCEEEEEEEECCC---CCccEE
Confidence 789999999999988 8899999999999999999999999999999999999998544 89999999886 789999
Q ss_pred EEEecccccccc--eeeeEEEecC
Q 029885 108 AYLNLQPIISAA--RLRHLVHVSS 129 (186)
Q Consensus 108 ~~v~l~~l~~~~--~~~~~~~l~~ 129 (186)
+.++|.++.... ....||+|..
T Consensus 79 ~~i~l~~l~~~~~~~~~~w~~L~~ 102 (105)
T cd04050 79 LTLPLSELLKEPDLTLDQPFPLDN 102 (105)
T ss_pred EEEEHHHhhccccceeeeeEecCC
Confidence 999999988654 4567777654
No 37
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.83 E-value=2.5e-19 Score=125.12 Aligned_cols=116 Identities=24% Similarity=0.270 Sum_probs=97.4
Q ss_pred EEEeEcCCCCCCCCCCcEEEEEECCeEEEeeeeeCCCCCeecCeEEEEeeCC---CceEEEEEEEcCCCCCCCeeEEEEE
Q 029885 34 VVQGKRLVIRDFKSSDPYVVLKLGNQMAKTKVINSCLNPVWNEEHSLSLTEP---VGVLSLEVFDKDRFKADDKMGKAYL 110 (186)
Q Consensus 34 i~~a~~L~~~~~~~~dpy~~v~~~~~~~~T~~~~~~~~P~w~e~~~f~v~~~---~~~l~v~v~d~~~~~~d~~lG~~~v 110 (186)
|++|++|+. ..+.+|||+++.++..+++|++++++.+|.|||+|.|.+... ...|.|+|||++..+++++||++.+
T Consensus 2 vi~a~~L~~-~~g~~Dpyv~v~~~~~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~~d~~iG~~~~ 80 (127)
T cd08373 2 VVSLKNLPG-LKGKGDRIAKVTFRGVKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNRLIGSATV 80 (127)
T ss_pred eEEeeCCcc-cCCCCCCEEEEEECCEeeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCCCCceEEEEEE
Confidence 688999988 567899999999999899999999999999999999999753 3499999999999989999999999
Q ss_pred ecccccccceeeeEEEecCCCeeeEEEeeCCCCeecccceEEEECCEEEEEEeEEecccceecEEEEEEEEeCCC
Q 029885 111 NLQPIISAARLRHLVHVSSGETPLRKIIPDSENCLARESSIICINGEVVQNVWLRLCEVESGEIELKVKIVDAPS 185 (186)
Q Consensus 111 ~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~G~l~l~l~~~~~~~ 185 (186)
+++++..+.....|++|.... .....|+|+++++|.++.+
T Consensus 81 ~l~~l~~~~~~~~~~~L~~~~-----------------------------------~~~~~~~l~l~~~~~~~~~ 120 (127)
T cd08373 81 SLQDLVSEGLLEVTEPLLDSN-----------------------------------GRPTGATISLEVSYQPPDG 120 (127)
T ss_pred EhhHcccCCceEEEEeCcCCC-----------------------------------CCcccEEEEEEEEEeCCCC
Confidence 999998877766676664330 1113589999999998763
No 38
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.83 E-value=1.3e-19 Score=124.90 Aligned_cols=99 Identities=21% Similarity=0.290 Sum_probs=86.0
Q ss_pred eEEEEEEEEeEcCCCCCCCCCCcEEEEEECCeEEEeeeeeCCCCCeecCeEEEEeeCCCceEEEEEEEcCCCCCCCeeEE
Q 029885 28 GQLKVTVVQGKRLVIRDFKSSDPYVVLKLGNQMAKTKVINSCLNPVWNEEHSLSLTEPVGVLSLEVFDKDRFKADDKMGK 107 (186)
Q Consensus 28 ~~L~v~i~~a~~L~~~~~~~~dpy~~v~~~~~~~~T~~~~~~~~P~w~e~~~f~v~~~~~~l~v~v~d~~~~~~d~~lG~ 107 (186)
+.|.|+|++|++|+..+ ..|||+++++++++.+|++.++ .||.|||.|.|.+......|.|+|||++.+ .|++||+
T Consensus 2 ~~L~V~Vv~Ar~L~~~~--~~dPYV~Ik~g~~k~kT~v~~~-~nP~WnE~F~F~~~~~~~~L~v~V~dkd~~-~DD~lG~ 77 (127)
T cd08394 2 SLLCVLVKKAKLDGAPD--KFNTYVTLKVQNVKSTTIAVRG-SQPCWEQDFMFEINRLDLGLVIELWNKGLI-WDTLVGT 77 (127)
T ss_pred ceEEEEEEEeeCCCCCC--CCCCeEEEEECCEEeEeeECCC-CCCceeeEEEEEEcCCCCEEEEEEEeCCCc-CCCceEE
Confidence 57999999999997654 4589999999999999999987 599999999999988766899999999976 8999999
Q ss_pred EEEeccccccccee--eeEEEecCC
Q 029885 108 AYLNLQPIISAARL--RHLVHVSSG 130 (186)
Q Consensus 108 ~~v~l~~l~~~~~~--~~~~~l~~~ 130 (186)
+.++|.++..+... ..||+|...
T Consensus 78 v~i~L~~v~~~~~~~~~~Wy~L~~~ 102 (127)
T cd08394 78 VWIPLSTIRQSNEEGPGEWLTLDSE 102 (127)
T ss_pred EEEEhHHcccCCCCCCCccEecChH
Confidence 99999999866554 677777643
No 39
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=99.83 E-value=1.3e-19 Score=125.99 Aligned_cols=104 Identities=29% Similarity=0.360 Sum_probs=91.1
Q ss_pred CcceEEEEEEEEeEcCCCCC-CCCCCcEEEEEEC---CeEEEeeeeeCCCCCeecCeEEEEeeCC---CceEEEEEEEcC
Q 029885 25 QPFGQLKVTVVQGKRLVIRD-FKSSDPYVVLKLG---NQMAKTKVINSCLNPVWNEEHSLSLTEP---VGVLSLEVFDKD 97 (186)
Q Consensus 25 ~~~~~L~v~i~~a~~L~~~~-~~~~dpy~~v~~~---~~~~~T~~~~~~~~P~w~e~~~f~v~~~---~~~l~v~v~d~~ 97 (186)
...+.|.|+|++|++|+..+ .+.+|||+++.+. ...++|++++++.||.|||+|.|.+... ...|.|+|||++
T Consensus 13 ~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~V~d~d 92 (124)
T cd08385 13 FQSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYSELGNKTLVFSVYDFD 92 (124)
T ss_pred CCCCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEeCCHHHhCCCEEEEEEEeCC
Confidence 34578999999999999988 8889999999984 2457999999999999999999998753 248999999999
Q ss_pred CCCCCCeeEEEEEecccccccceeeeEEEec
Q 029885 98 RFKADDKMGKAYLNLQPIISAARLRHLVHVS 128 (186)
Q Consensus 98 ~~~~d~~lG~~~v~l~~l~~~~~~~~~~~l~ 128 (186)
.++++++||++.++++++..+...+.|++|.
T Consensus 93 ~~~~~~~lG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08385 93 RFSKHDLIGEVRVPLLTVDLGHVTEEWRDLE 123 (124)
T ss_pred CCCCCceeEEEEEecCcccCCCCcceEEEcc
Confidence 9989999999999999998887788887775
No 40
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=99.83 E-value=9.7e-20 Score=124.15 Aligned_cols=99 Identities=31% Similarity=0.595 Sum_probs=86.5
Q ss_pred EEEEEEEeEcCCCCC--CCCCCcEEEEEECCeEEEeeeeeCCCCCee-cCeEEEEeeCC---CceEEEEEEEcCCCCCCC
Q 029885 30 LKVTVVQGKRLVIRD--FKSSDPYVVLKLGNQMAKTKVINSCLNPVW-NEEHSLSLTEP---VGVLSLEVFDKDRFKADD 103 (186)
Q Consensus 30 L~v~i~~a~~L~~~~--~~~~dpy~~v~~~~~~~~T~~~~~~~~P~w-~e~~~f~v~~~---~~~l~v~v~d~~~~~~d~ 103 (186)
|.|+|++|++|+.++ .+.+|||++++++..+++|++++++.+|.| ||+|.|.+... ...|.|+|||++.+++++
T Consensus 1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~~~~~ 80 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGSTTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYSAND 80 (110)
T ss_pred CEEEEEEEECCCccccCCCCCCceEEEEECCeeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCCCCCC
Confidence 579999999999887 578999999999999999999999999999 99999998864 248999999999998999
Q ss_pred eeEEEEEecccccc---cceeeeEEEec
Q 029885 104 KMGKAYLNLQPIIS---AARLRHLVHVS 128 (186)
Q Consensus 104 ~lG~~~v~l~~l~~---~~~~~~~~~l~ 128 (186)
+||++.+++.++.. ......||+|.
T Consensus 81 ~iG~~~~~l~~l~~~~~~~~~~~w~~l~ 108 (110)
T cd08688 81 AIGKVYIDLNPLLLKDSVSQISGWFPIY 108 (110)
T ss_pred ceEEEEEeHHHhcccCCccccCCeEEcc
Confidence 99999999999987 33455666553
No 41
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.83 E-value=7.1e-20 Score=130.72 Aligned_cols=101 Identities=19% Similarity=0.248 Sum_probs=87.6
Q ss_pred EEEEEEEEeEcCCCCCCCCCCcEEEEEECC-----eEEEeeeeeCCCCCeecCeEEEEeeC---------------CC-c
Q 029885 29 QLKVTVVQGKRLVIRDFKSSDPYVVLKLGN-----QMAKTKVINSCLNPVWNEEHSLSLTE---------------PV-G 87 (186)
Q Consensus 29 ~L~v~i~~a~~L~~~~~~~~dpy~~v~~~~-----~~~~T~~~~~~~~P~w~e~~~f~v~~---------------~~-~ 87 (186)
.|.|+|++|++|+. ..|.+||||++.+.. .+++|++++++.||.|||+|.|.+.. .. .
T Consensus 1 kL~V~Vi~ArnL~~-~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~~ 79 (148)
T cd04010 1 KLSVRVIECSDLAL-KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEKL 79 (148)
T ss_pred CEEEEEEeCcCCCC-CCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccEE
Confidence 48999999999988 567899999999965 56899999999999999999999851 11 2
Q ss_pred eEEEEEEEcCCCCCCCeeEEEEEeccccccc-ceeeeEEEecCC
Q 029885 88 VLSLEVFDKDRFKADDKMGKAYLNLQPIISA-ARLRHLVHVSSG 130 (186)
Q Consensus 88 ~l~v~v~d~~~~~~d~~lG~~~v~l~~l~~~-~~~~~~~~l~~~ 130 (186)
.|.|.|||++..++|+|||++.|++.++..+ .....||.|...
T Consensus 80 ~L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~~~~~~~W~~L~~~ 123 (148)
T cd04010 80 ELRVDLWHASMGGGDVFLGEVRIPLRGLDLQAGSHQAWYFLQPR 123 (148)
T ss_pred EEEEEEEcCCCCCCCceeEEEEEecccccccCCcCcceeecCCc
Confidence 7899999999988999999999999999987 667889998755
No 42
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=99.82 E-value=5.8e-19 Score=123.01 Aligned_cols=89 Identities=33% Similarity=0.456 Sum_probs=79.0
Q ss_pred EEEEEEEEeEcCCCCC-CCCCCcEEEEEECC---eEEEeeeeeCCCCCeecCeEEEEeeCCC-ceEEEEEEEcCCCCCCC
Q 029885 29 QLKVTVVQGKRLVIRD-FKSSDPYVVLKLGN---QMAKTKVINSCLNPVWNEEHSLSLTEPV-GVLSLEVFDKDRFKADD 103 (186)
Q Consensus 29 ~L~v~i~~a~~L~~~~-~~~~dpy~~v~~~~---~~~~T~~~~~~~~P~w~e~~~f~v~~~~-~~l~v~v~d~~~~~~d~ 103 (186)
.|+|+|++|++|+..+ .+.+|||+++.+.. ..++|+++.++.+|.|||+|.|.+.... ..|.|+|||++..++++
T Consensus 2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~~~~~~ 81 (126)
T cd04043 2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEPLWISATVWDRSFVGKHD 81 (126)
T ss_pred EEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEEcCCCCCCEEEEEEEECCCCCCCc
Confidence 5899999999999988 88999999998853 3589999999999999999999998753 48999999999988899
Q ss_pred eeEEEEEecccccc
Q 029885 104 KMGKAYLNLQPIIS 117 (186)
Q Consensus 104 ~lG~~~v~l~~l~~ 117 (186)
+||++.++++++..
T Consensus 82 ~iG~~~i~l~~~~~ 95 (126)
T cd04043 82 LCGRASLKLDPKRF 95 (126)
T ss_pred eEEEEEEecCHHHc
Confidence 99999999987643
No 43
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=99.82 E-value=3.8e-19 Score=124.22 Aligned_cols=100 Identities=27% Similarity=0.541 Sum_probs=85.4
Q ss_pred eEEEEEEEEeEcCCCCC-CCCCCcEEEEEECCeEEEeeeeeCCCCCeecCeEEEEeeCCCceEEEEEEEcCCC-------
Q 029885 28 GQLKVTVVQGKRLVIRD-FKSSDPYVVLKLGNQMAKTKVINSCLNPVWNEEHSLSLTEPVGVLSLEVFDKDRF------- 99 (186)
Q Consensus 28 ~~L~v~i~~a~~L~~~~-~~~~dpy~~v~~~~~~~~T~~~~~~~~P~w~e~~~f~v~~~~~~l~v~v~d~~~~------- 99 (186)
+.|.|+|++|++|+..+ .+.+|||+++.++...++|+++.++.+|.|||.|.|.+..+...|.|+|||++..
T Consensus 1 ~~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~v~~t~~P~Wne~f~f~~~~~~~~l~i~v~d~d~~~~~~~~~ 80 (127)
T cd04027 1 AKISITVVCAQGLIAKDKTGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECHNSSDRIKVRVWDEDDDIKSRLKQ 80 (127)
T ss_pred CeEEEEEEECcCCcCCCCCCCcCcEEEEEECCEeeecceecCCCCCccceEEEEEecCCCCEEEEEEEECCCCcccccce
Confidence 36899999999999998 8889999999998888999999999999999999999876656899999999853
Q ss_pred ----CCCCeeEEEEEecccccccceeeeEEEecC
Q 029885 100 ----KADDKMGKAYLNLQPIISAARLRHLVHVSS 129 (186)
Q Consensus 100 ----~~d~~lG~~~v~l~~l~~~~~~~~~~~l~~ 129 (186)
+.+++||.+.+++.++.. ....|+.|..
T Consensus 81 ~~~~~~~~~iG~~~i~l~~~~~--~~~~w~~L~~ 112 (127)
T cd04027 81 KFTRESDDFLGQTIIEVRTLSG--EMDVWYNLEK 112 (127)
T ss_pred eccccCCCcceEEEEEhHHccC--CCCeEEECcc
Confidence 468899999999998742 3456666653
No 44
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=99.82 E-value=1.1e-19 Score=126.13 Aligned_cols=102 Identities=20% Similarity=0.219 Sum_probs=87.0
Q ss_pred CcceEEEEEEEEeEcCCCCC-CCCCCcEEEEEEC------CeEEEeeeeeCCCCCeecCeEEEEeeCC---CceEEEEEE
Q 029885 25 QPFGQLKVTVVQGKRLVIRD-FKSSDPYVVLKLG------NQMAKTKVINSCLNPVWNEEHSLSLTEP---VGVLSLEVF 94 (186)
Q Consensus 25 ~~~~~L~v~i~~a~~L~~~~-~~~~dpy~~v~~~------~~~~~T~~~~~~~~P~w~e~~~f~v~~~---~~~l~v~v~ 94 (186)
+..+.|.|.|++|+||+..+ .+.+|||+++++. ..+++|++++++.||.|||+|.|.+... ...|.++||
T Consensus 11 ~~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~~~~L~~~V~ 90 (124)
T cd08680 11 SGDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKLYQKTLQVDVC 90 (124)
T ss_pred CCCCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHhhcCEEEEEEE
Confidence 55688999999999999988 7889999999982 2468999999999999999999998753 249999999
Q ss_pred EcCCCCCCCeeEEEEEecccccccc-eeeeEEE
Q 029885 95 DKDRFKADDKMGKAYLNLQPIISAA-RLRHLVH 126 (186)
Q Consensus 95 d~~~~~~d~~lG~~~v~l~~l~~~~-~~~~~~~ 126 (186)
+++.++++++||.+.++|+++.... ....||.
T Consensus 91 ~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~Wy~ 123 (124)
T cd08680 91 SVGPDQQEECLGGAQISLADFESSEEMSTKWYN 123 (124)
T ss_pred eCCCCCceeEEEEEEEEhhhccCCCcccccccc
Confidence 9999999999999999999985543 3455554
No 45
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=99.82 E-value=1.7e-19 Score=126.00 Aligned_cols=103 Identities=22% Similarity=0.238 Sum_probs=87.1
Q ss_pred CcceEEEEEEEEeEcCCCCC-C-CCCCcEEEEEEC-----CeEEEeeeeeCCCCCeecCeEEEEeeCC---CceEEEEEE
Q 029885 25 QPFGQLKVTVVQGKRLVIRD-F-KSSDPYVVLKLG-----NQMAKTKVINSCLNPVWNEEHSLSLTEP---VGVLSLEVF 94 (186)
Q Consensus 25 ~~~~~L~v~i~~a~~L~~~~-~-~~~dpy~~v~~~-----~~~~~T~~~~~~~~P~w~e~~~f~v~~~---~~~l~v~v~ 94 (186)
...+.|.|.|++|++|+..+ . +.+||||++++. ..+++|++++++.||.|||+|.|.+... ...|.+.||
T Consensus 12 ~~~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~~~l~~~~L~v~V~ 91 (128)
T cd08392 12 FRTSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEADLLSSRQLQVSVW 91 (128)
T ss_pred CCCCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEEcCHHHhCCcEEEEEEE
Confidence 44579999999999999988 4 899999999994 2367999999999999999999998753 348999999
Q ss_pred EcCCCCCCCeeEEEEEeccccccc---ceeeeEEEe
Q 029885 95 DKDRFKADDKMGKAYLNLQPIISA---ARLRHLVHV 127 (186)
Q Consensus 95 d~~~~~~d~~lG~~~v~l~~l~~~---~~~~~~~~l 127 (186)
|++.++++++||++.|+|.++.-. .....||.|
T Consensus 92 ~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l 127 (128)
T cd08392 92 HSRTLKRRVFLGEVLIPLADWDFEDTDSQRFLWYPL 127 (128)
T ss_pred eCCCCcCcceEEEEEEEcCCcccCCCCccccceEEC
Confidence 999998999999999999998543 244566554
No 46
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.82 E-value=1.3e-18 Score=122.82 Aligned_cols=83 Identities=28% Similarity=0.481 Sum_probs=74.1
Q ss_pred EEEEEEEEeEcCCCCC-CCCCCcEEEEEECCeEEEeeeeeCCCCCeecCeEEEEeeCC----------CceEEEEEEEcC
Q 029885 29 QLKVTVVQGKRLVIRD-FKSSDPYVVLKLGNQMAKTKVINSCLNPVWNEEHSLSLTEP----------VGVLSLEVFDKD 97 (186)
Q Consensus 29 ~L~v~i~~a~~L~~~~-~~~~dpy~~v~~~~~~~~T~~~~~~~~P~w~e~~~f~v~~~----------~~~l~v~v~d~~ 97 (186)
.|+|.|++|++|+..+ .+.+|||+++.++..+++|++++++.||.|||.|.|.+... ...+.|+|||++
T Consensus 2 ~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~d 81 (135)
T cd04017 2 QLRAYIYQARDLLAADKSGLSDPFARVSFLNQSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQD 81 (135)
T ss_pred EEEEEEEEeecCcCCCCCCCCCCEEEEEECCeeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEeCc
Confidence 5899999999999999 88999999999999999999999999999999999975321 136899999999
Q ss_pred CCCCCCeeEEEEEe
Q 029885 98 RFKADDKMGKAYLN 111 (186)
Q Consensus 98 ~~~~d~~lG~~~v~ 111 (186)
..++|++||++.+.
T Consensus 82 ~~~~d~~iG~~~i~ 95 (135)
T cd04017 82 SVGKDEFLGRSVAK 95 (135)
T ss_pred CCCCCccceEEEee
Confidence 99899999999863
No 47
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=99.82 E-value=1.7e-19 Score=123.17 Aligned_cols=89 Identities=37% Similarity=0.590 Sum_probs=80.2
Q ss_pred eEEEEEEEEeEcCCCCC-C-CCCCcEEEEEEC---CeEEEeeeeeCCCCCeecCeEEEEeeCC----CceEEEEEEEcCC
Q 029885 28 GQLKVTVVQGKRLVIRD-F-KSSDPYVVLKLG---NQMAKTKVINSCLNPVWNEEHSLSLTEP----VGVLSLEVFDKDR 98 (186)
Q Consensus 28 ~~L~v~i~~a~~L~~~~-~-~~~dpy~~v~~~---~~~~~T~~~~~~~~P~w~e~~~f~v~~~----~~~l~v~v~d~~~ 98 (186)
|.|.|+|++|++|+..+ . +.+||||++++. ...++|++++++.||.|||.|.|.+... ...|.++|||++.
T Consensus 1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~ 80 (111)
T cd04041 1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDR 80 (111)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCCC
Confidence 67999999999999988 6 899999999984 3458999999999999999999987754 3489999999999
Q ss_pred CCCCCeeEEEEEeccccc
Q 029885 99 FKADDKMGKAYLNLQPII 116 (186)
Q Consensus 99 ~~~d~~lG~~~v~l~~l~ 116 (186)
+++|++||++.+++.++.
T Consensus 81 ~~~dd~lG~~~i~l~~l~ 98 (111)
T cd04041 81 FTADDRLGRVEIDLKELI 98 (111)
T ss_pred CCCCCcceEEEEEHHHHh
Confidence 989999999999999997
No 48
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.81 E-value=3.1e-19 Score=124.19 Aligned_cols=102 Identities=29% Similarity=0.390 Sum_probs=85.5
Q ss_pred CcceEEEEEEEEeEcCCCCC-CCCCCcEEEEEECC-----eEEEeeeeeCCCCCeecCeEEEEeeC----CCceEEEEEE
Q 029885 25 QPFGQLKVTVVQGKRLVIRD-FKSSDPYVVLKLGN-----QMAKTKVINSCLNPVWNEEHSLSLTE----PVGVLSLEVF 94 (186)
Q Consensus 25 ~~~~~L~v~i~~a~~L~~~~-~~~~dpy~~v~~~~-----~~~~T~~~~~~~~P~w~e~~~f~v~~----~~~~l~v~v~ 94 (186)
+..+.|.|+|++|++|+..+ .+.+|||+++++.. .+++|++++++.+|.|||+|.|.+.. ....|.|+||
T Consensus 13 ~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~l~~~V~ 92 (125)
T cd04031 13 KVTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRETLKERTLEVTVW 92 (125)
T ss_pred CCCCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHHHhCCCEEEEEEE
Confidence 45688999999999999988 88899999999953 46899999999999999999998644 2348999999
Q ss_pred EcCCCCCCCeeEEEEEecccccccceeeeEEEe
Q 029885 95 DKDRFKADDKMGKAYLNLQPIISAARLRHLVHV 127 (186)
Q Consensus 95 d~~~~~~d~~lG~~~v~l~~l~~~~~~~~~~~l 127 (186)
|++.++++++||++.++|++... .....||+|
T Consensus 93 d~~~~~~~~~iG~~~i~l~~~~~-~~~~~W~~L 124 (125)
T cd04031 93 DYDRDGENDFLGEVVIDLADALL-DDEPHWYPL 124 (125)
T ss_pred eCCCCCCCcEeeEEEEecccccc-cCCcceEEC
Confidence 99999889999999999998332 233566665
No 49
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=99.81 E-value=4.3e-19 Score=123.40 Aligned_cols=103 Identities=30% Similarity=0.491 Sum_probs=93.5
Q ss_pred eEEEEEEEEeEcCCCCC-CCCCCcEEEEEECCeEEEeeeeeC-CCCCeecCeEEEEeeCC----CceEEEEEEEcCCCCC
Q 029885 28 GQLKVTVVQGKRLVIRD-FKSSDPYVVLKLGNQMAKTKVINS-CLNPVWNEEHSLSLTEP----VGVLSLEVFDKDRFKA 101 (186)
Q Consensus 28 ~~L~v~i~~a~~L~~~~-~~~~dpy~~v~~~~~~~~T~~~~~-~~~P~w~e~~~f~v~~~----~~~l~v~v~d~~~~~~ 101 (186)
|.|.|+|++|++|+..+ .+.+|||++++++...++|++..+ +.+|.|||.|.|.+..+ ...|.|+|||++.+++
T Consensus 1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~ 80 (124)
T cd04049 1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDNFSD 80 (124)
T ss_pred CeEEEEEEecCCCCCCCCCCCcCceEEEEECCEeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECccCCC
Confidence 57999999999999988 889999999999988899999885 89999999999999876 3489999999999989
Q ss_pred CCeeEEEEEecccccccceeeeEEEecCC
Q 029885 102 DDKMGKAYLNLQPIISAARLRHLVHVSSG 130 (186)
Q Consensus 102 d~~lG~~~v~l~~l~~~~~~~~~~~l~~~ 130 (186)
+++||.+.+++.++..++..+.|+.|...
T Consensus 81 d~~iG~~~i~l~~l~~~~~~~~~~~l~p~ 109 (124)
T cd04049 81 DDFIGEATIHLKGLFEEGVEPGTAELVPA 109 (124)
T ss_pred CCeEEEEEEEhHHhhhCCCCcCceEeecc
Confidence 99999999999999998888888888754
No 50
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=99.81 E-value=3.9e-19 Score=124.01 Aligned_cols=103 Identities=24% Similarity=0.326 Sum_probs=89.9
Q ss_pred CcceEEEEEEEEeEcCCCCC-CCCCCcEEEEEEC-----CeEEEeeeeeCCCCCeecCeEEEEeeCC---CceEEEEEEE
Q 029885 25 QPFGQLKVTVVQGKRLVIRD-FKSSDPYVVLKLG-----NQMAKTKVINSCLNPVWNEEHSLSLTEP---VGVLSLEVFD 95 (186)
Q Consensus 25 ~~~~~L~v~i~~a~~L~~~~-~~~~dpy~~v~~~-----~~~~~T~~~~~~~~P~w~e~~~f~v~~~---~~~l~v~v~d 95 (186)
...+.|.|+|++|++|+..+ .+.+||||++.+. ..+++|++++++.||.|||+|.|.+... ...|.+.|||
T Consensus 13 ~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~l~~~~l~i~v~~ 92 (127)
T cd04030 13 SQRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEELKRRTLDVAVKN 92 (127)
T ss_pred CCCCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHHhcCCEEEEEEEE
Confidence 44588999999999999999 7899999999984 3568999999999999999999998653 2489999999
Q ss_pred cCCC--CCCCeeEEEEEecccccccceeeeEEEe
Q 029885 96 KDRF--KADDKMGKAYLNLQPIISAARLRHLVHV 127 (186)
Q Consensus 96 ~~~~--~~d~~lG~~~v~l~~l~~~~~~~~~~~l 127 (186)
++.+ +++++||++.+++.++..+.....||.|
T Consensus 93 ~~~~~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L 126 (127)
T cd04030 93 SKSFLSREKKLLGQVLIDLSDLDLSKGFTQWYDL 126 (127)
T ss_pred CCcccCCCCceEEEEEEecccccccCCccceEEC
Confidence 9875 6899999999999999887777778766
No 51
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=99.81 E-value=2.1e-19 Score=124.07 Aligned_cols=102 Identities=19% Similarity=0.271 Sum_probs=86.3
Q ss_pred cceEEEEEEEEeEcCCCCCCCCCCcEEEEEECC-----eEEEeeeeeCCCCCeecCeEEEEeeCCC--ceEEEEEEEcCC
Q 029885 26 PFGQLKVTVVQGKRLVIRDFKSSDPYVVLKLGN-----QMAKTKVINSCLNPVWNEEHSLSLTEPV--GVLSLEVFDKDR 98 (186)
Q Consensus 26 ~~~~L~v~i~~a~~L~~~~~~~~dpy~~v~~~~-----~~~~T~~~~~~~~P~w~e~~~f~v~~~~--~~l~v~v~d~~~ 98 (186)
..+.|.|.|++|++|+..+.+.+||||++++.. .+++|++++++.+|.|||+|.|.+.... ..|.|+||+++.
T Consensus 10 ~~~~L~V~Vi~ar~L~~~~~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~l~v~V~~~~~ 89 (119)
T cd08685 10 QNRKLTLHVLEAKGLRSTNSGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQKRLLVTVWNKLS 89 (119)
T ss_pred cCCEEEEEEEEEECCCCCCCCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhCCEEEEEEECCCC
Confidence 357899999999999988877899999999943 3579999999999999999999987532 378899999987
Q ss_pred CC-CCCeeEEEEEecccccccceeeeEEEe
Q 029885 99 FK-ADDKMGKAYLNLQPIISAARLRHLVHV 127 (186)
Q Consensus 99 ~~-~d~~lG~~~v~l~~l~~~~~~~~~~~l 127 (186)
.+ ++++||.+.+++.++..+.....||.|
T Consensus 90 ~~~~~~~lG~~~i~l~~~~~~~~~~~Wy~l 119 (119)
T cd08685 90 KSRDSGLLGCMSFGVKSIVNQKEISGWYYL 119 (119)
T ss_pred CcCCCEEEEEEEecHHHhccCccccceEeC
Confidence 75 468999999999999877666777654
No 52
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.81 E-value=1.4e-18 Score=120.22 Aligned_cols=102 Identities=25% Similarity=0.405 Sum_probs=89.2
Q ss_pred eEEEEEEEEeEcCCCCC-CCCCCcEEEEEECC-eEEEeeeeeCCCCCeecCeEEEEeeCCCceEEEEEEEcCCCCCCCee
Q 029885 28 GQLKVTVVQGKRLVIRD-FKSSDPYVVLKLGN-QMAKTKVINSCLNPVWNEEHSLSLTEPVGVLSLEVFDKDRFKADDKM 105 (186)
Q Consensus 28 ~~L~v~i~~a~~L~~~~-~~~~dpy~~v~~~~-~~~~T~~~~~~~~P~w~e~~~f~v~~~~~~l~v~v~d~~~~~~d~~l 105 (186)
|.|.|+|++|++|+..+ .+.+|||+++.++. ..++|+++.++.+|.|||.|.|.+......|.|+|||++.+++|++|
T Consensus 1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~~~~~L~v~v~d~~~~~~d~~I 80 (120)
T cd04045 1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPVTSPNQKITLEVMDYEKVGKDRSL 80 (120)
T ss_pred CeEEEEEEeeECCCCccCCCCcCCEEEEEECCEEeeceeEECCCcCCccCceEEEEecCCCCEEEEEEEECCCCCCCCee
Confidence 57999999999999988 88999999999976 46899999999999999999999887767999999999999899999
Q ss_pred EEEEEecccccccceeeeEEEecCC
Q 029885 106 GKAYLNLQPIISAARLRHLVHVSSG 130 (186)
Q Consensus 106 G~~~v~l~~l~~~~~~~~~~~l~~~ 130 (186)
|++.+++.++..+ ..+.||.+-..
T Consensus 81 G~~~~~l~~l~~~-~~~~~~~~~~~ 104 (120)
T cd04045 81 GSVEINVSDLIKK-NEDGKYVEYDD 104 (120)
T ss_pred eEEEEeHHHhhCC-CCCceEEecCC
Confidence 9999999999887 44555555433
No 53
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=99.81 E-value=9.7e-19 Score=121.52 Aligned_cols=99 Identities=24% Similarity=0.528 Sum_probs=84.9
Q ss_pred EEEEEEEEeEcCCCCC-CCCCCcEEEEEEC-CeEEEeeeeeCCCCCeecCeEEEEeeCCCceEEEEEEEcCCCCC--CCe
Q 029885 29 QLKVTVVQGKRLVIRD-FKSSDPYVVLKLG-NQMAKTKVINSCLNPVWNEEHSLSLTEPVGVLSLEVFDKDRFKA--DDK 104 (186)
Q Consensus 29 ~L~v~i~~a~~L~~~~-~~~~dpy~~v~~~-~~~~~T~~~~~~~~P~w~e~~~f~v~~~~~~l~v~v~d~~~~~~--d~~ 104 (186)
.|+|+|++|++|+..+ .+.+|||++++++ ...++|++++++.||.|||+|.|.+.. ...|.|+|||++.+++ |++
T Consensus 1 ~l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~-~~~l~i~V~d~~~~~~~~d~~ 79 (123)
T cd08382 1 KVRLTVLCADGLAKRDLFRLPDPFAVITVDGGQTHSTDVAKKTLDPKWNEHFDLTVGP-SSIITIQVFDQKKFKKKDQGF 79 (123)
T ss_pred CeEEEEEEecCCCccCCCCCCCcEEEEEECCccceEccEEcCCCCCcccceEEEEeCC-CCEEEEEEEECCCCCCCCCce
Confidence 3789999999999988 8899999999996 677999999999999999999999976 4699999999998865 579
Q ss_pred eEEEEEeccccccccee-eeEEEec
Q 029885 105 MGKAYLNLQPIISAARL-RHLVHVS 128 (186)
Q Consensus 105 lG~~~v~l~~l~~~~~~-~~~~~l~ 128 (186)
||++.+++.++...... ..|++|.
T Consensus 80 lG~~~i~l~~l~~~~~~~~~~~~l~ 104 (123)
T cd08382 80 LGCVRIRANAVLPLKDTGYQRLDLR 104 (123)
T ss_pred EeEEEEEHHHccccCCCccceeEee
Confidence 99999999998765432 4555553
No 54
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.81 E-value=6.6e-19 Score=122.58 Aligned_cols=104 Identities=28% Similarity=0.380 Sum_probs=90.1
Q ss_pred CcceEEEEEEEEeEcCCCCC-CCCCCcEEEEEE---CCeEEEeeeeeCCCCCeecCeEEEEeeCC----CceEEEEEEEc
Q 029885 25 QPFGQLKVTVVQGKRLVIRD-FKSSDPYVVLKL---GNQMAKTKVINSCLNPVWNEEHSLSLTEP----VGVLSLEVFDK 96 (186)
Q Consensus 25 ~~~~~L~v~i~~a~~L~~~~-~~~~dpy~~v~~---~~~~~~T~~~~~~~~P~w~e~~~f~v~~~----~~~l~v~v~d~ 96 (186)
...+.|.|+|++|++|+..+ .+.+|||+++.+ +....+|++++++.+|.|||+|.|.+... ...|.++|||+
T Consensus 13 ~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~d~ 92 (125)
T cd08386 13 FQESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKLQQRVLYLQVLDY 92 (125)
T ss_pred CCCCEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHHhCCCEEEEEEEeC
Confidence 45578999999999999988 888999999998 34568999999999999999999975322 23799999999
Q ss_pred CCCCCCCeeEEEEEecccccccceeeeEEEec
Q 029885 97 DRFKADDKMGKAYLNLQPIISAARLRHLVHVS 128 (186)
Q Consensus 97 ~~~~~d~~lG~~~v~l~~l~~~~~~~~~~~l~ 128 (186)
+.++++++||++.+++.++..+.....|+.|.
T Consensus 93 d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~l~ 124 (125)
T cd08386 93 DRFSRNDPIGEVSLPLNKVDLTEEQTFWKDLK 124 (125)
T ss_pred CCCcCCcEeeEEEEecccccCCCCcceEEecC
Confidence 99989999999999999998887788887764
No 55
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=99.81 E-value=7.1e-19 Score=122.98 Aligned_cols=103 Identities=26% Similarity=0.332 Sum_probs=84.6
Q ss_pred CcceEEEEEEEEeEcCCCCC-C-CCCCcEEEEEEC---CeEEEeeeeeCCCCCeecCeEEEE-eeCC---CceEEEEEEE
Q 029885 25 QPFGQLKVTVVQGKRLVIRD-F-KSSDPYVVLKLG---NQMAKTKVINSCLNPVWNEEHSLS-LTEP---VGVLSLEVFD 95 (186)
Q Consensus 25 ~~~~~L~v~i~~a~~L~~~~-~-~~~dpy~~v~~~---~~~~~T~~~~~~~~P~w~e~~~f~-v~~~---~~~l~v~v~d 95 (186)
...+.|.|+|++|++|+..+ . +.+||||++.+. .++.+|++++++.||.|||+|.|. +... ...|.++|||
T Consensus 13 ~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~~~~~~~L~~~V~d 92 (128)
T cd08388 13 SEKKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYNQLQDLSLHFAVLS 92 (128)
T ss_pred CCCCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcccCHHHhCCCEEEEEEEE
Confidence 44579999999999999988 5 889999999984 346799999999999999999993 4422 2379999999
Q ss_pred cCCCCCCCeeEEEEEeccccccc--ceeeeEEEe
Q 029885 96 KDRFKADDKMGKAYLNLQPIISA--ARLRHLVHV 127 (186)
Q Consensus 96 ~~~~~~d~~lG~~~v~l~~l~~~--~~~~~~~~l 127 (186)
++.++++++||++.++|+++.-. .....|+++
T Consensus 93 ~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~~~~ 126 (128)
T cd08388 93 FDRYSRDDVIGEVVCPLAGADLLNEGELLVSREI 126 (128)
T ss_pred cCCCCCCceeEEEEEeccccCCCCCceEEEEEec
Confidence 99999999999999999988543 445555544
No 56
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=99.80 E-value=4.2e-19 Score=123.62 Aligned_cols=92 Identities=24% Similarity=0.380 Sum_probs=82.7
Q ss_pred EEEEEEEEeEcCCCCC-CCCCCcEEEEEECC-eEEEeeeee-CCCCCeecCeEEEEeeCC-----CceEEEEEEEcCCCC
Q 029885 29 QLKVTVVQGKRLVIRD-FKSSDPYVVLKLGN-QMAKTKVIN-SCLNPVWNEEHSLSLTEP-----VGVLSLEVFDKDRFK 100 (186)
Q Consensus 29 ~L~v~i~~a~~L~~~~-~~~~dpy~~v~~~~-~~~~T~~~~-~~~~P~w~e~~~f~v~~~-----~~~l~v~v~d~~~~~ 100 (186)
.|.|+|++|++|+..+ .+.+|||++++++. .+++|++.. ++.+|.|||.|.|.+... ...|.|+|||++.++
T Consensus 1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~~~ 80 (125)
T cd04051 1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERPSL 80 (125)
T ss_pred CEEEEEEEcccCCCCCcccCCceEEEEEECCCcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCCCC
Confidence 3889999999999988 88999999999987 789999976 489999999999999877 359999999999988
Q ss_pred CCCeeEEEEEecccccccce
Q 029885 101 ADDKMGKAYLNLQPIISAAR 120 (186)
Q Consensus 101 ~d~~lG~~~v~l~~l~~~~~ 120 (186)
++++||.+.+++.++..+..
T Consensus 81 ~~~~lG~~~i~l~~l~~~~~ 100 (125)
T cd04051 81 GDKLIGEVRVPLKDLLDGAS 100 (125)
T ss_pred CCCcEEEEEEEHHHhhcccC
Confidence 89999999999999987754
No 57
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.80 E-value=5.2e-19 Score=123.02 Aligned_cols=104 Identities=24% Similarity=0.303 Sum_probs=89.4
Q ss_pred CCcceEEEEEEEEeEcCCCCC-CCCCCcEEEEEEC---CeEEEeeeeeCCCCCeecCeEEEE-eeCC---CceEEEEEEE
Q 029885 24 RQPFGQLKVTVVQGKRLVIRD-FKSSDPYVVLKLG---NQMAKTKVINSCLNPVWNEEHSLS-LTEP---VGVLSLEVFD 95 (186)
Q Consensus 24 ~~~~~~L~v~i~~a~~L~~~~-~~~~dpy~~v~~~---~~~~~T~~~~~~~~P~w~e~~~f~-v~~~---~~~l~v~v~d 95 (186)
....+.|.|+|++|+||+..+ .+.+|||+++.+. .++++|+++++ .||.|||+|.|. +... ...|.++|||
T Consensus 12 ~~~~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l~~~~L~~~V~~ 90 (124)
T cd08389 12 DPSARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFNETFTFSRVEPEELNNMALRFRLYG 90 (124)
T ss_pred CCCCCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeecccccC-CCCcccCEEEECCCCHHHhccCEEEEEEEE
Confidence 345678999999999999998 7889999998772 35689999887 999999999998 5542 2389999999
Q ss_pred cCCCCCCCeeEEEEEecccccccceeeeEEEec
Q 029885 96 KDRFKADDKMGKAYLNLQPIISAARLRHLVHVS 128 (186)
Q Consensus 96 ~~~~~~d~~lG~~~v~l~~l~~~~~~~~~~~l~ 128 (186)
++.++++++||++.++|+++..+.....|++|+
T Consensus 91 ~~~~~~~~~lG~~~i~L~~l~~~~~~~~w~~L~ 123 (124)
T cd08389 91 VERMRKERLIGEKVVPLSQLNLEGETTVWLTLE 123 (124)
T ss_pred CCCcccCceEEEEEEeccccCCCCCceEEEeCC
Confidence 999999999999999999998888888888775
No 58
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.80 E-value=1.1e-18 Score=124.86 Aligned_cols=90 Identities=27% Similarity=0.428 Sum_probs=81.1
Q ss_pred EEEEEEEeEcCCCCC-CC--------------CCCcEEEEEECCeEEEeeeeeCCCCCeecCeEEEEeeCC--CceEEEE
Q 029885 30 LKVTVVQGKRLVIRD-FK--------------SSDPYVVLKLGNQMAKTKVINSCLNPVWNEEHSLSLTEP--VGVLSLE 92 (186)
Q Consensus 30 L~v~i~~a~~L~~~~-~~--------------~~dpy~~v~~~~~~~~T~~~~~~~~P~w~e~~~f~v~~~--~~~l~v~ 92 (186)
|.|+|++|++|+.++ .+ .+||||++.+++++.+|++++++.||.|||+|.|.+..+ ...|.|+
T Consensus 2 ~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g~~~kT~v~~~t~nPvWNE~f~f~v~~p~~~~~l~~~ 81 (151)
T cd04018 2 FIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQKVKTSVKKNSYNPEWNEQIVFPEMFPPLCERIKIQ 81 (151)
T ss_pred eEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECCEeeecceEcCCCCCCcceEEEEEeeCCCcCCEEEEE
Confidence 789999999999988 33 689999999999999999999999999999999997643 3489999
Q ss_pred EEEcCCCCCCCeeEEEEEecccccccc
Q 029885 93 VFDKDRFKADDKMGKAYLNLQPIISAA 119 (186)
Q Consensus 93 v~d~~~~~~d~~lG~~~v~l~~l~~~~ 119 (186)
|||++..++|++||.+.+++.++....
T Consensus 82 v~D~d~~~~dd~iG~~~l~l~~l~~~~ 108 (151)
T cd04018 82 IRDWDRVGNDDVIGTHFIDLSKISNSG 108 (151)
T ss_pred EEECCCCCCCCEEEEEEEeHHHhccCC
Confidence 999999999999999999999987754
No 59
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.80 E-value=1.9e-18 Score=117.95 Aligned_cols=100 Identities=23% Similarity=0.377 Sum_probs=85.2
Q ss_pred cceEEEEEEEEeEcCCCCCCCCCCcEEEEEECCeEEEeeeeeCCCCCeecCeEEEEeeCCC-----ceEEEEEEEcCCCC
Q 029885 26 PFGQLKVTVVQGKRLVIRDFKSSDPYVVLKLGNQMAKTKVINSCLNPVWNEEHSLSLTEPV-----GVLSLEVFDKDRFK 100 (186)
Q Consensus 26 ~~~~L~v~i~~a~~L~~~~~~~~dpy~~v~~~~~~~~T~~~~~~~~P~w~e~~~f~v~~~~-----~~l~v~v~d~~~~~ 100 (186)
....|+|+|++|++|+ .+.+||||++++++++++|++++++.+|.|||+|.|.+..+. ..|.|+|||++.++
T Consensus 2 ~~~~l~V~v~~a~~L~---~~~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~~~ 78 (111)
T cd04011 2 QDFQVRVRVIEARQLV---GGNIDPVVKVEVGGQKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRSLR 78 (111)
T ss_pred CcEEEEEEEEEcccCC---CCCCCCEEEEEECCEeeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCcccc
Confidence 3467999999999998 468999999999999999999999999999999999986532 37999999999998
Q ss_pred CCCeeEEEEEecccccccce---eeeEEEec
Q 029885 101 ADDKMGKAYLNLQPIISAAR---LRHLVHVS 128 (186)
Q Consensus 101 ~d~~lG~~~v~l~~l~~~~~---~~~~~~l~ 128 (186)
++++||++.++++++..+.. ...|++|.
T Consensus 79 ~~~~iG~~~i~l~~v~~~~~~~~~~~w~~L~ 109 (111)
T cd04011 79 SDTLIGSFKLDVGTVYDQPDHAFLRKWLLLT 109 (111)
T ss_pred cCCccEEEEECCccccCCCCCcceEEEEEee
Confidence 89999999999999976643 34455553
No 60
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=99.80 E-value=1.7e-18 Score=120.12 Aligned_cols=104 Identities=22% Similarity=0.290 Sum_probs=91.1
Q ss_pred CcceEEEEEEEEeEcCCCCC--CCCCCcEEEEEEC---CeEEEeeeeeCCCCCeecCeEEEEeeCC---CceEEEEEEEc
Q 029885 25 QPFGQLKVTVVQGKRLVIRD--FKSSDPYVVLKLG---NQMAKTKVINSCLNPVWNEEHSLSLTEP---VGVLSLEVFDK 96 (186)
Q Consensus 25 ~~~~~L~v~i~~a~~L~~~~--~~~~dpy~~v~~~---~~~~~T~~~~~~~~P~w~e~~~f~v~~~---~~~l~v~v~d~ 96 (186)
...+.|.|.|++|++|+..+ .+.+|||+++++. ...++|++++++.+|.|||.|.|.+... ...|.|+|||+
T Consensus 11 ~~~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~i~~~~l~~~~l~i~v~d~ 90 (123)
T cd08390 11 LEEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFKELQRRTLRLSVYDV 90 (123)
T ss_pred CCCCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEEcCHHHhcccEEEEEEEEC
Confidence 45678999999999999886 6788999999983 3457899999999999999999998753 24899999999
Q ss_pred CCCCCCCeeEEEEEecccccccceeeeEEEec
Q 029885 97 DRFKADDKMGKAYLNLQPIISAARLRHLVHVS 128 (186)
Q Consensus 97 ~~~~~d~~lG~~~v~l~~l~~~~~~~~~~~l~ 128 (186)
+..+++++||++.++|+++.....+..|++|+
T Consensus 91 ~~~~~~~~iG~~~i~L~~l~~~~~~~~w~~L~ 122 (123)
T cd08390 91 DRFSRHCIIGHVLFPLKDLDLVKGGVVWRDLE 122 (123)
T ss_pred CcCCCCcEEEEEEEeccceecCCCceEEEeCC
Confidence 99888999999999999999888888888875
No 61
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=99.79 E-value=9.3e-19 Score=127.02 Aligned_cols=105 Identities=28% Similarity=0.366 Sum_probs=91.4
Q ss_pred cceEEEEEEEEeEcCCCCC-CCCCCcEEEEEEC-----CeEEEeeeeeCCCCCeecCeEEEEeeCC----CceEEEEEEE
Q 029885 26 PFGQLKVTVVQGKRLVIRD-FKSSDPYVVLKLG-----NQMAKTKVINSCLNPVWNEEHSLSLTEP----VGVLSLEVFD 95 (186)
Q Consensus 26 ~~~~L~v~i~~a~~L~~~~-~~~~dpy~~v~~~-----~~~~~T~~~~~~~~P~w~e~~~f~v~~~----~~~l~v~v~d 95 (186)
..+.|.|+|++|++|+..+ .+.+||||++++. ...++|++++++.||.|||+|.|.+... ...|.|+|||
T Consensus 25 ~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V~d 104 (162)
T cd04020 25 STGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTVWD 104 (162)
T ss_pred CCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEEEEe
Confidence 5689999999999999998 8899999999882 3568999999999999999999985422 2379999999
Q ss_pred cCCCCCCCeeEEEEEecccccccceeeeEEEecCC
Q 029885 96 KDRFKADDKMGKAYLNLQPIISAARLRHLVHVSSG 130 (186)
Q Consensus 96 ~~~~~~d~~lG~~~v~l~~l~~~~~~~~~~~l~~~ 130 (186)
++.++++++||++.+++.++........|+.+.++
T Consensus 105 ~d~~~~d~~lG~v~i~l~~~~~~~~~~~w~~~~~~ 139 (162)
T cd04020 105 HDKLSSNDFLGGVRLGLGTGKSYGQAVDWMDSTGE 139 (162)
T ss_pred CCCCCCCceEEEEEEeCCccccCCCccccccCChH
Confidence 99998899999999999999877777888877755
No 62
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=99.79 E-value=5.8e-18 Score=121.26 Aligned_cols=101 Identities=27% Similarity=0.417 Sum_probs=83.4
Q ss_pred EEEEEEEeEc--CCCCC-CCCCCcEEEEEE-----CCeEEEeeeeeCCCCCeecCeEEEEeeCCC---------ceEEEE
Q 029885 30 LKVTVVQGKR--LVIRD-FKSSDPYVVLKL-----GNQMAKTKVINSCLNPVWNEEHSLSLTEPV---------GVLSLE 92 (186)
Q Consensus 30 L~v~i~~a~~--L~~~~-~~~~dpy~~v~~-----~~~~~~T~~~~~~~~P~w~e~~~f~v~~~~---------~~l~v~ 92 (186)
..++|..|++ ++... .+.+|||+++++ ..++.+|++++++.||.|||+|.|.+.... ..|.++
T Consensus 4 ~el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~ 83 (155)
T cd08690 4 IELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFE 83 (155)
T ss_pred eEEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEE
Confidence 4556666666 55665 678999999987 235799999999999999999999997552 379999
Q ss_pred EEEcCCC-CCCCeeEEEEEecccccccceeeeEEEecCC
Q 029885 93 VFDKDRF-KADDKMGKAYLNLQPIISAARLRHLVHVSSG 130 (186)
Q Consensus 93 v~d~~~~-~~d~~lG~~~v~l~~l~~~~~~~~~~~l~~~ 130 (186)
|||++.+ ++|++||++.++|+.+........|++|..|
T Consensus 84 V~d~~~f~~~D~~iG~~~i~L~~l~~~~~~~~~~~L~~~ 122 (155)
T cd08690 84 VYHKGGFLRSDKLLGTAQVKLEPLETKCEIHESVDLMDG 122 (155)
T ss_pred EEeCCCcccCCCeeEEEEEEcccccccCcceEEEEhhhC
Confidence 9999986 5799999999999999888777778887755
No 63
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=99.79 E-value=2.2e-18 Score=119.53 Aligned_cols=103 Identities=26% Similarity=0.367 Sum_probs=88.3
Q ss_pred CcceEEEEEEEEeEcCCCCC--CCCCCcEEEEEECC-----eEEEeeeeeCCCCCeecCeEEEEeeCC---CceEEEEEE
Q 029885 25 QPFGQLKVTVVQGKRLVIRD--FKSSDPYVVLKLGN-----QMAKTKVINSCLNPVWNEEHSLSLTEP---VGVLSLEVF 94 (186)
Q Consensus 25 ~~~~~L~v~i~~a~~L~~~~--~~~~dpy~~v~~~~-----~~~~T~~~~~~~~P~w~e~~~f~v~~~---~~~l~v~v~ 94 (186)
...+.|.|+|++|++|+..+ .+.+||||++++.. .+++|++++++.+|.|||+|.|.+... ...|.|+||
T Consensus 11 ~~~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l~~~~l~i~v~ 90 (123)
T cd08521 11 YKTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKSQLETRTLQLSVW 90 (123)
T ss_pred CCCCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHHHhCCCEEEEEEE
Confidence 45688999999999999877 57899999998831 458999999999999999999998753 348999999
Q ss_pred EcCCCCCCCeeEEEEEecccccccceeeeEEEe
Q 029885 95 DKDRFKADDKMGKAYLNLQPIISAARLRHLVHV 127 (186)
Q Consensus 95 d~~~~~~d~~lG~~~v~l~~l~~~~~~~~~~~l 127 (186)
|++.++++++||++.++++++..+.....||.|
T Consensus 91 d~~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~l 123 (123)
T cd08521 91 HHDRFGRNTFLGEVEIPLDSWDLDSQQSEWYPL 123 (123)
T ss_pred eCCCCcCCceeeEEEEecccccccCCCccEEEC
Confidence 999998999999999999999777666777654
No 64
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.79 E-value=4.5e-18 Score=116.64 Aligned_cols=101 Identities=34% Similarity=0.525 Sum_probs=88.9
Q ss_pred EEEEEEEeEcCCCCC-CCCCCcEEEEEECC-eEEEeeeeeCCCCCeecCeEEEEeeCC-CceEEEEEEEcCCCCCCCeeE
Q 029885 30 LKVTVVQGKRLVIRD-FKSSDPYVVLKLGN-QMAKTKVINSCLNPVWNEEHSLSLTEP-VGVLSLEVFDKDRFKADDKMG 106 (186)
Q Consensus 30 L~v~i~~a~~L~~~~-~~~~dpy~~v~~~~-~~~~T~~~~~~~~P~w~e~~~f~v~~~-~~~l~v~v~d~~~~~~d~~lG 106 (186)
|+|.|++|++|+..+ .+.+|||+++.+.+ ..++|+++.++.+|.|||+|.|.+... ...+.|+|||++..+++++||
T Consensus 1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~~~~~~T~v~~~~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~~~~~~~iG 80 (115)
T cd04040 1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPVPSRVRAVLKVEVYDWDRGGKDDLLG 80 (115)
T ss_pred CEEEEEeeeCCCCCCCCCCCCCeEEEEECCCcceeeceecCCCCCcccccEEEEeccCCCCEEEEEEEeCCCCCCCCceE
Confidence 578999999999888 78899999999965 458999999999999999999998864 348999999999988999999
Q ss_pred EEEEecccccccceeeeEEEecCC
Q 029885 107 KAYLNLQPIISAARLRHLVHVSSG 130 (186)
Q Consensus 107 ~~~v~l~~l~~~~~~~~~~~l~~~ 130 (186)
++.+++.++..+...+.|++|...
T Consensus 81 ~~~~~l~~l~~~~~~~~~~~L~~~ 104 (115)
T cd04040 81 SAYIDLSDLEPEETTELTLPLDGQ 104 (115)
T ss_pred EEEEEHHHcCCCCcEEEEEECcCC
Confidence 999999999888777888777643
No 65
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=99.78 E-value=3.3e-18 Score=122.61 Aligned_cols=100 Identities=33% Similarity=0.519 Sum_probs=85.4
Q ss_pred cCCcceEEEEEEEEeEcCCCCC-CCCCCcEEEEEECC-----------------------------eEEEeeeeeCCCCC
Q 029885 23 MRQPFGQLKVTVVQGKRLVIRD-FKSSDPYVVLKLGN-----------------------------QMAKTKVINSCLNP 72 (186)
Q Consensus 23 ~~~~~~~L~v~i~~a~~L~~~~-~~~~dpy~~v~~~~-----------------------------~~~~T~~~~~~~~P 72 (186)
..++.+.|.|+|++|++|+..+ .|.+||||++.+.. ..++|+++.++.+|
T Consensus 23 ~~~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP 102 (153)
T cd08676 23 AEPPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLNP 102 (153)
T ss_pred cCCCeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCCC
Confidence 4567899999999999999999 88999999999852 13789999999999
Q ss_pred eecCeEEEEeeCCC-ceEEEEEEEcCCCCCCCeeEEEEEecccccccceeeeEEEe
Q 029885 73 VWNEEHSLSLTEPV-GVLSLEVFDKDRFKADDKMGKAYLNLQPIISAARLRHLVHV 127 (186)
Q Consensus 73 ~w~e~~~f~v~~~~-~~l~v~v~d~~~~~~d~~lG~~~v~l~~l~~~~~~~~~~~l 127 (186)
.|||+|.|.+.... ..|.|+|||++ +++||++.++++++.. ...+.||.|
T Consensus 103 ~WnE~F~f~v~~~~~~~L~i~V~D~d----d~~IG~v~i~l~~l~~-~~~d~W~~L 153 (153)
T cd08676 103 VWNETFRFEVEDVSNDQLHLDIWDHD----DDFLGCVNIPLKDLPS-CGLDSWFKL 153 (153)
T ss_pred ccccEEEEEeccCCCCEEEEEEEecC----CCeEEEEEEEHHHhCC-CCCCCeEeC
Confidence 99999999997643 48999999997 8899999999999983 345666654
No 66
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.78 E-value=4.8e-18 Score=115.96 Aligned_cols=100 Identities=23% Similarity=0.356 Sum_probs=84.0
Q ss_pred CCCCCcEEEEEECCe-EEEeeeeeCCCCCeecCeEEEEeeCCC-ceEEEEEEEcCCCCCCCeeEEEEEecccccccceee
Q 029885 45 FKSSDPYVVLKLGNQ-MAKTKVINSCLNPVWNEEHSLSLTEPV-GVLSLEVFDKDRFKADDKMGKAYLNLQPIISAARLR 122 (186)
Q Consensus 45 ~~~~dpy~~v~~~~~-~~~T~~~~~~~~P~w~e~~~f~v~~~~-~~l~v~v~d~~~~~~d~~lG~~~v~l~~l~~~~~~~ 122 (186)
+|.+||||++.++++ .++|+++.++.||.|||.|.|.+.+.. ..|.|.|||++.+ ++++||.+.++|+++.....
T Consensus 10 ~G~~dPYv~v~v~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~-~d~~iG~~~v~L~~l~~~~~-- 86 (111)
T cd04052 10 TGLLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDRDR-HDPVLGSVSISLNDLIDATS-- 86 (111)
T ss_pred CCCCCceEEEEECCEEEEEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECCCC-CCCeEEEEEecHHHHHhhhh--
Confidence 688999999999774 579999999999999999999998754 4799999999999 89999999999998854311
Q ss_pred eEEEecCCCeeeEEEeeCCCCeecccceEEEECCEEEEEEeEEecccceecEEEEEEEEeC
Q 029885 123 HLVHVSSGETPLRKIIPDSENCLARESSIICINGEVVQNVWLRLCEVESGEIELKVKIVDA 183 (186)
Q Consensus 123 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~G~l~l~l~~~~~ 183 (186)
..+.|++|.+.+.|+|+++++|.|.
T Consensus 87 ------------------------------------~~~~w~~L~~~~~G~i~~~~~~~p~ 111 (111)
T cd04052 87 ------------------------------------VGQQWFPLSGNGQGRIRISALWKPV 111 (111)
T ss_pred ------------------------------------ccceeEECCCCCCCEEEEEEEEecC
Confidence 1235677766688999999999874
No 67
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=99.77 E-value=2e-17 Score=117.34 Aligned_cols=102 Identities=20% Similarity=0.285 Sum_probs=87.7
Q ss_pred CcceEEEEEEEEeEcCCCCCCCCCCcEEEEEECCeE-EEeeeeeCCCCCeecCeEEEEeeCCCceEEEEEEEcCC-CC--
Q 029885 25 QPFGQLKVTVVQGKRLVIRDFKSSDPYVVLKLGNQM-AKTKVINSCLNPVWNEEHSLSLTEPVGVLSLEVFDKDR-FK-- 100 (186)
Q Consensus 25 ~~~~~L~v~i~~a~~L~~~~~~~~dpy~~v~~~~~~-~~T~~~~~~~~P~w~e~~~f~v~~~~~~l~v~v~d~~~-~~-- 100 (186)
+-...|.|.|++|++|+.++ +|||.+.+++.. .+|+++.++.+|.|+|+|.|........+.|+||..+. .+
T Consensus 8 R~~~sL~v~V~EAk~Lp~~~----~~Y~~i~Ld~~~vaRT~v~~~~~nP~W~E~F~f~~~~~~~~l~v~v~k~~~~~~~~ 83 (146)
T cd04013 8 RTENSLKLWIIEAKGLPPKK----RYYCELCLDKTLYARTTSKLKTDTLFWGEHFEFSNLPPVSVITVNLYRESDKKKKK 83 (146)
T ss_pred EEEEEEEEEEEEccCCCCcC----CceEEEEECCEEEEEEEEEcCCCCCcceeeEEecCCCcccEEEEEEEEccCccccc
Confidence 44578999999999998865 899999999887 69999999999999999999866655689999986543 21
Q ss_pred -CCCeeEEEEEecccccccceeeeEEEecCC
Q 029885 101 -ADDKMGKAYLNLQPIISAARLRHLVHVSSG 130 (186)
Q Consensus 101 -~d~~lG~~~v~l~~l~~~~~~~~~~~l~~~ 130 (186)
++++||.+.|+++++..+...+.||++...
T Consensus 84 ~~~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~~ 114 (146)
T cd04013 84 DKSQLIGTVNIPVTDVSSRQFVEKWYPVSTP 114 (146)
T ss_pred cCCcEEEEEEEEHHHhcCCCcccEEEEeecC
Confidence 578999999999999999889999998755
No 68
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=99.77 E-value=5.6e-18 Score=119.77 Aligned_cols=101 Identities=23% Similarity=0.356 Sum_probs=89.4
Q ss_pred EEEEEEEeEcCCCCCCCCCCcEEEEEEC----CeEEEeeeeeCCCCCeecCeEEEEeeCC----------------CceE
Q 029885 30 LKVTVVQGKRLVIRDFKSSDPYVVLKLG----NQMAKTKVINSCLNPVWNEEHSLSLTEP----------------VGVL 89 (186)
Q Consensus 30 L~v~i~~a~~L~~~~~~~~dpy~~v~~~----~~~~~T~~~~~~~~P~w~e~~~f~v~~~----------------~~~l 89 (186)
|.|.|++|++|+....+.+|||+++++. ...++|+++.++.+|.|+|+|.|.+... ...|
T Consensus 1 L~V~Vi~A~~L~~~~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~l 80 (137)
T cd08675 1 LSVRVLECRDLALKSNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSEL 80 (137)
T ss_pred CEEEEEEccCCCcccCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccEE
Confidence 5789999999987656789999999997 6779999999999999999999998764 2389
Q ss_pred EEEEEEcCCCCCCCeeEEEEEecccccccceeeeEEEecCC
Q 029885 90 SLEVFDKDRFKADDKMGKAYLNLQPIISAARLRHLVHVSSG 130 (186)
Q Consensus 90 ~v~v~d~~~~~~d~~lG~~~v~l~~l~~~~~~~~~~~l~~~ 130 (186)
.|+|||++..+++++||++.+++.++........|+.|...
T Consensus 81 ~i~V~d~~~~~~~~~IG~~~i~l~~l~~~~~~~~W~~L~~~ 121 (137)
T cd08675 81 RVELWHASMVSGDDFLGEVRIPLQGLQQAGSHQAWYFLQPR 121 (137)
T ss_pred EEEEEcCCcCcCCcEEEEEEEehhhccCCCcccceEecCCc
Confidence 99999999988899999999999999887778888888754
No 69
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=99.77 E-value=3e-17 Score=114.33 Aligned_cols=90 Identities=33% Similarity=0.498 Sum_probs=79.1
Q ss_pred eEEEEEEEEeEcCCCCC-CCCCCcEEEEEECCe-EEEeeeeeCCCCCeecCeEEEEeeCCCceEEEEEEEcCCCCCCCee
Q 029885 28 GQLKVTVVQGKRLVIRD-FKSSDPYVVLKLGNQ-MAKTKVINSCLNPVWNEEHSLSLTEPVGVLSLEVFDKDRFKADDKM 105 (186)
Q Consensus 28 ~~L~v~i~~a~~L~~~~-~~~~dpy~~v~~~~~-~~~T~~~~~~~~P~w~e~~~f~v~~~~~~l~v~v~d~~~~~~d~~l 105 (186)
..|.|+|.+|+ |...+ .+.+|||+++++++. .++|+++.++.+|.|||.|.|.+... ..|.|+|||++..+.+++|
T Consensus 2 ~~L~V~i~~a~-l~~~~~~~~~dPyv~v~~~~~~~~kT~v~~~t~~P~Wne~f~~~~~~~-~~l~~~V~d~~~~~~~~~i 79 (125)
T cd04021 2 SQLQITVESAK-LKSNSKSFKPDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLVTPQ-STLEFKVWSHHTLKADVLL 79 (125)
T ss_pred ceEEEEEEeeE-CCCCCcCCCCCeEEEEEECCcccEEeeeeCCCCCCccccEEEEEeCCC-CEEEEEEEeCCCCCCCcEE
Confidence 46899999998 54444 778999999999877 79999999999999999999998643 5899999999999899999
Q ss_pred EEEEEecccccccc
Q 029885 106 GKAYLNLQPIISAA 119 (186)
Q Consensus 106 G~~~v~l~~l~~~~ 119 (186)
|++.++++++....
T Consensus 80 G~~~i~l~~l~~~~ 93 (125)
T cd04021 80 GEASLDLSDILKNH 93 (125)
T ss_pred EEEEEEHHHhHhhc
Confidence 99999999987653
No 70
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=99.76 E-value=7.9e-18 Score=118.47 Aligned_cols=95 Identities=27% Similarity=0.381 Sum_probs=83.2
Q ss_pred CcceEEEEEEEEeEcCCCCC-CCCCCcEEEEEEC-------CeEEEeeeeeCCCCCeecCeEEEEeeCC-----CceEEE
Q 029885 25 QPFGQLKVTVVQGKRLVIRD-FKSSDPYVVLKLG-------NQMAKTKVINSCLNPVWNEEHSLSLTEP-----VGVLSL 91 (186)
Q Consensus 25 ~~~~~L~v~i~~a~~L~~~~-~~~~dpy~~v~~~-------~~~~~T~~~~~~~~P~w~e~~~f~v~~~-----~~~l~v 91 (186)
...+.|.|.|++|++|+..+ .+.+|||+++++. ...++|++++++.||.|||+|.|.+... ...|.|
T Consensus 13 ~~~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~~l~~ 92 (133)
T cd04009 13 ASEQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALLLF 92 (133)
T ss_pred CCCCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechhhcccCCCEEEE
Confidence 34578999999999999988 7899999999984 3468999999999999999999998752 238999
Q ss_pred EEEEcCCCCCCCeeEEEEEecccccccc
Q 029885 92 EVFDKDRFKADDKMGKAYLNLQPIISAA 119 (186)
Q Consensus 92 ~v~d~~~~~~d~~lG~~~v~l~~l~~~~ 119 (186)
+|||++.++++++||++.++|+++..-.
T Consensus 93 ~V~d~d~~~~d~~iG~~~i~l~~l~~~~ 120 (133)
T cd04009 93 TVKDYDLLGSNDFEGEAFLPLNDIPGVE 120 (133)
T ss_pred EEEecCCCCCCcEeEEEEEeHHHCCccc
Confidence 9999999988999999999999887543
No 71
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=99.76 E-value=5.4e-18 Score=119.75 Aligned_cols=102 Identities=27% Similarity=0.375 Sum_probs=86.0
Q ss_pred CcceEEEEEEEEeEcCCCCC-CCCCCcEEEEEECC-----eEEEeeeeeCCCCCeecCeEEEEeeCC---CceEEEEEEE
Q 029885 25 QPFGQLKVTVVQGKRLVIRD-FKSSDPYVVLKLGN-----QMAKTKVINSCLNPVWNEEHSLSLTEP---VGVLSLEVFD 95 (186)
Q Consensus 25 ~~~~~L~v~i~~a~~L~~~~-~~~~dpy~~v~~~~-----~~~~T~~~~~~~~P~w~e~~~f~v~~~---~~~l~v~v~d 95 (186)
...+.|.|+|++|++|+..+ .+.+|||+++.+.. .+++|++++++.||.|+|+|.|.+... ...|.|+|||
T Consensus 12 ~~~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~~~~~~l~~~v~d 91 (136)
T cd08404 12 PTTNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEELEDISVEFLVLD 91 (136)
T ss_pred CCCCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHHHhCCCEEEEEEEE
Confidence 34578999999999999998 88999999999832 247899999999999999999998742 2378999999
Q ss_pred cCCCCCCCeeEEEEEecccccccceeeeEEEec
Q 029885 96 KDRFKADDKMGKAYLNLQPIISAARLRHLVHVS 128 (186)
Q Consensus 96 ~~~~~~d~~lG~~~v~l~~l~~~~~~~~~~~l~ 128 (186)
++.++++++||.+.+++.. .+.....|+++.
T Consensus 92 ~d~~~~~~~iG~~~~~~~~--~~~~~~~w~~l~ 122 (136)
T cd08404 92 SDRVTKNEVIGRLVLGPKA--SGSGGHHWKEVC 122 (136)
T ss_pred CCCCCCCccEEEEEECCcC--CCchHHHHHHHH
Confidence 9999999999999999998 344566776664
No 72
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=99.76 E-value=1.2e-17 Score=115.57 Aligned_cols=98 Identities=26% Similarity=0.413 Sum_probs=84.9
Q ss_pred EEEEeEcCCCCC-CCCCCcEEEEEECCe-------EEEeeeeeCCCCCeecCeEEEEeeCCC-ceEEEEEEEcCC----C
Q 029885 33 TVVQGKRLVIRD-FKSSDPYVVLKLGNQ-------MAKTKVINSCLNPVWNEEHSLSLTEPV-GVLSLEVFDKDR----F 99 (186)
Q Consensus 33 ~i~~a~~L~~~~-~~~~dpy~~v~~~~~-------~~~T~~~~~~~~P~w~e~~~f~v~~~~-~~l~v~v~d~~~----~ 99 (186)
-.++|++|+..+ .+.+|||+++++... .++|++++++.||.|+|+|.|.+.... ..|.|+|||++. .
T Consensus 5 ~~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~~~~ 84 (120)
T cd04048 5 LSISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKSKDL 84 (120)
T ss_pred EEEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeEEEEEEEEecCCcCCC
Confidence 347899999988 889999999999543 489999999999999999999865433 389999999997 7
Q ss_pred CCCCeeEEEEEecccccccceeeeEEEecCC
Q 029885 100 KADDKMGKAYLNLQPIISAARLRHLVHVSSG 130 (186)
Q Consensus 100 ~~d~~lG~~~v~l~~l~~~~~~~~~~~l~~~ 130 (186)
+++++||++.+++.++..+.....++.|..|
T Consensus 85 ~~~d~iG~~~i~l~~l~~~~~~~~~~~l~~~ 115 (120)
T cd04048 85 SDHDFLGEAECTLGEIVSSPGQKLTLPLKGG 115 (120)
T ss_pred CCCcEEEEEEEEHHHHhcCCCcEEEEEccCC
Confidence 8999999999999999988888888888655
No 73
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=99.76 E-value=2.8e-18 Score=120.99 Aligned_cols=101 Identities=24% Similarity=0.288 Sum_probs=83.3
Q ss_pred CcceEEEEEEEEeEcCCCCC-CCCCCcEEEEEECC-----eEEEeeeeeCCCCCeecCeEEEEeeCC---CceEEEEEEE
Q 029885 25 QPFGQLKVTVVQGKRLVIRD-FKSSDPYVVLKLGN-----QMAKTKVINSCLNPVWNEEHSLSLTEP---VGVLSLEVFD 95 (186)
Q Consensus 25 ~~~~~L~v~i~~a~~L~~~~-~~~~dpy~~v~~~~-----~~~~T~~~~~~~~P~w~e~~~f~v~~~---~~~l~v~v~d 95 (186)
+..+.|.|+|++|++|+..+ .+.+||||++++.. .+.+|++++++.||.|||+|.|.+... +..|.|+|||
T Consensus 12 ~~~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~~l~~~~l~~~V~~ 91 (136)
T cd08406 12 PTAERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAIVLQDLSLRVTVAE 91 (136)
T ss_pred CCCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCHHHhCCcEEEEEEEe
Confidence 45678999999999999988 88999999999932 256899999999999999999998753 2389999999
Q ss_pred cCCCCCCCeeEEEEEecccccccceeeeEEEe
Q 029885 96 KDRFKADDKMGKAYLNLQPIISAARLRHLVHV 127 (186)
Q Consensus 96 ~~~~~~d~~lG~~~v~l~~l~~~~~~~~~~~l 127 (186)
++.++++++||++.+.... .+...+.|..+
T Consensus 92 ~d~~~~~~~iG~v~lg~~~--~g~~~~hW~~m 121 (136)
T cd08406 92 STEDGKTPNVGHVIIGPAA--SGMGLSHWNQM 121 (136)
T ss_pred CCCCCCCCeeEEEEECCCC--CChhHHHHHHH
Confidence 9999999999999987664 33444455444
No 74
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.76 E-value=1.2e-17 Score=137.59 Aligned_cols=106 Identities=31% Similarity=0.384 Sum_probs=92.8
Q ss_pred CcceEEEEEEEEeEcCCCCC-CCCCCcEEEEEECC---eEEEeeeeeCCCCCeecCeEEEEeeCC---CceEEEEEEEcC
Q 029885 25 QPFGQLKVTVVQGKRLVIRD-FKSSDPYVVLKLGN---QMAKTKVINSCLNPVWNEEHSLSLTEP---VGVLSLEVFDKD 97 (186)
Q Consensus 25 ~~~~~L~v~i~~a~~L~~~~-~~~~dpy~~v~~~~---~~~~T~~~~~~~~P~w~e~~~f~v~~~---~~~l~v~v~d~~ 97 (186)
.....|.|+|++|++|+..+ .|.+|||+++++.. .+.+|++.++++||.|||+|.|.+... ...|.++|||.|
T Consensus 164 ~~~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~tlnP~fnEtf~f~v~~~~l~~~~L~l~V~~~d 243 (421)
T KOG1028|consen 164 FELNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRKTLNPVFNETFRFEVPYEELSNRVLHLSVYDFD 243 (421)
T ss_pred ccCCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeecCcCCccccceEeecCHHHhccCEEEEEEEecC
Confidence 45678999999999999999 78899999999943 568999999999999999999997654 239999999999
Q ss_pred CCCCCCeeEEEEEecccccccceeeeEEEecCC
Q 029885 98 RFKADDKMGKAYLNLQPIISAARLRHLVHVSSG 130 (186)
Q Consensus 98 ~~~~d~~lG~~~v~l~~l~~~~~~~~~~~l~~~ 130 (186)
.++++++||++.++|..+........|.++...
T Consensus 244 rfsr~~~iGev~~~l~~~~~~~~~~~w~~l~~~ 276 (421)
T KOG1028|consen 244 RFSRHDFIGEVILPLGEVDLLSTTLFWKDLQPS 276 (421)
T ss_pred CcccccEEEEEEecCccccccccceeeeccccc
Confidence 999999999999999999888777777666543
No 75
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=99.76 E-value=8.4e-18 Score=117.42 Aligned_cols=103 Identities=9% Similarity=0.203 Sum_probs=83.0
Q ss_pred CCcceEEEEEEEEeEcCCCCC-CCCCCcEEEEEEC-----CeEEEeeeeeCCC-CCeecCeEEEEeeCCCc--eEEEEEE
Q 029885 24 RQPFGQLKVTVVQGKRLVIRD-FKSSDPYVVLKLG-----NQMAKTKVINSCL-NPVWNEEHSLSLTEPVG--VLSLEVF 94 (186)
Q Consensus 24 ~~~~~~L~v~i~~a~~L~~~~-~~~~dpy~~v~~~-----~~~~~T~~~~~~~-~P~w~e~~~f~v~~~~~--~l~v~v~ 94 (186)
.+..+.|+|.|++|+||+... .+.+||||++++- -.+++|++++++. +|.|||+|.|++..... .|.|+||
T Consensus 10 ~p~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~~~v~l~v~v~ 89 (135)
T cd08692 10 QAVNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQEHGIQFLIKLY 89 (135)
T ss_pred cCcCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCchhheeEEEEEEE
Confidence 366789999999999999876 6677999999982 1468999999985 69999999999986543 7889999
Q ss_pred EcCCCCCCCeeEEEEEecccccccceeeeEEEe
Q 029885 95 DKDRFKADDKMGKAYLNLQPIISAARLRHLVHV 127 (186)
Q Consensus 95 d~~~~~~d~~lG~~~v~l~~l~~~~~~~~~~~l 127 (186)
|++..+++++||++.+..+... +...+.|.++
T Consensus 90 d~~~~~~n~~IG~v~lG~~~~~-~~~~~hW~~m 121 (135)
T cd08692 90 SRSSVRRKHFLGQVWISSDSSS-SEAVEQWKDT 121 (135)
T ss_pred eCCCCcCCceEEEEEECCccCC-chhhhhHHHH
Confidence 9999889999999999997632 2223455444
No 76
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=99.75 E-value=4.4e-18 Score=119.73 Aligned_cols=101 Identities=32% Similarity=0.406 Sum_probs=85.2
Q ss_pred CcceEEEEEEEEeEcCCCCC-CCCCCcEEEEEECC-----eEEEeeeeeCCCCCeecCeEEEEeeCC---CceEEEEEEE
Q 029885 25 QPFGQLKVTVVQGKRLVIRD-FKSSDPYVVLKLGN-----QMAKTKVINSCLNPVWNEEHSLSLTEP---VGVLSLEVFD 95 (186)
Q Consensus 25 ~~~~~L~v~i~~a~~L~~~~-~~~~dpy~~v~~~~-----~~~~T~~~~~~~~P~w~e~~~f~v~~~---~~~l~v~v~d 95 (186)
...+.|.|+|++|++|+..+ .+.+||||++.+.. .+++|++++++.+|.|||+|.|.+... ...|.|+|||
T Consensus 10 ~~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~~~l~~~V~d 89 (133)
T cd08384 10 TQRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAKKTLEITVWD 89 (133)
T ss_pred CCCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHHhCCCEEEEEEEe
Confidence 45689999999999999988 88999999999842 357999999999999999999998753 2489999999
Q ss_pred cCCCCCCCeeEEEEEecccccccceeeeEEEe
Q 029885 96 KDRFKADDKMGKAYLNLQPIISAARLRHLVHV 127 (186)
Q Consensus 96 ~~~~~~d~~lG~~~v~l~~l~~~~~~~~~~~l 127 (186)
++..+++++||.+.+++... +.....|+++
T Consensus 90 ~d~~~~~~~lG~~~i~l~~~--~~~~~~W~~~ 119 (133)
T cd08384 90 KDIGKSNDYIGGLQLGINAK--GERLRHWLDC 119 (133)
T ss_pred CCCCCCccEEEEEEEecCCC--CchHHHHHHH
Confidence 99988899999999999863 3344556554
No 77
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=99.75 E-value=3.9e-17 Score=112.24 Aligned_cols=96 Identities=26% Similarity=0.375 Sum_probs=75.7
Q ss_pred EEEEEEEeEcCCCCCCCCCCcEEEEEECCe-EEEeeeeeCCCCCeecCeEEEEeeCCC---ceEEEEEEEcCCCCCCCee
Q 029885 30 LKVTVVQGKRLVIRDFKSSDPYVVLKLGNQ-MAKTKVINSCLNPVWNEEHSLSLTEPV---GVLSLEVFDKDRFKADDKM 105 (186)
Q Consensus 30 L~v~i~~a~~L~~~~~~~~dpy~~v~~~~~-~~~T~~~~~~~~P~w~e~~~f~v~~~~---~~l~v~v~d~~~~~~d~~l 105 (186)
|.|+|++|++|+.. +.+||||.+++++. .++|+++++ .+|.|||+|.|.+...+ ..|.+.+||.+....+.++
T Consensus 2 L~v~vi~a~~l~~~--~~~dpyv~v~~~~~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~~~~~~ 78 (117)
T cd08383 2 LRLRILEAKNLPSK--GTRDPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKDRDIVI 78 (117)
T ss_pred eEEEEEEecCCCcC--CCCCceEEEEECCEEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccCCCeeEE
Confidence 78999999999886 78999999999875 479999999 99999999999998742 3788889998876566666
Q ss_pred EEEEEecccccccceeeeEEEecCC
Q 029885 106 GKAYLNLQPIISAARLRHLVHVSSG 130 (186)
Q Consensus 106 G~~~v~l~~l~~~~~~~~~~~l~~~ 130 (186)
|.+. +..+..+...+.|++|.+.
T Consensus 79 g~v~--l~~~~~~~~~~~w~~L~~~ 101 (117)
T cd08383 79 GKVA--LSKLDLGQGKDEWFPLTPV 101 (117)
T ss_pred EEEE--ecCcCCCCcceeEEECccC
Confidence 6655 5555556666677776543
No 78
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.75 E-value=2.2e-17 Score=114.82 Aligned_cols=89 Identities=31% Similarity=0.524 Sum_probs=79.6
Q ss_pred EEEEEEEEeEcCCCCC-CCCCCcEEEEEECCeE--EEeeeeeCCCCCeecCeEEEEeeCCCc-eEEEEEEEcCCCCCCCe
Q 029885 29 QLKVTVVQGKRLVIRD-FKSSDPYVVLKLGNQM--AKTKVINSCLNPVWNEEHSLSLTEPVG-VLSLEVFDKDRFKADDK 104 (186)
Q Consensus 29 ~L~v~i~~a~~L~~~~-~~~~dpy~~v~~~~~~--~~T~~~~~~~~P~w~e~~~f~v~~~~~-~l~v~v~d~~~~~~d~~ 104 (186)
.|+|.|++|++|+..+ .+.+|||+++.+++.. .+|.+++++.+|.|||+|.|.+..+.. .|.|+|||++.+++|++
T Consensus 1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~~kT~~v~~t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d~~~~dd~ 80 (124)
T cd04037 1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEATLPGNSILKISVMDYDLLGSDDL 80 (124)
T ss_pred CEEEEEEECcCCCCCCCCCCCCcEEEEEECCeeccceeeEEECCCCCccceEEEEEecCCCCCEEEEEEEECCCCCCCce
Confidence 3789999999999998 8899999999998765 578889999999999999999875543 89999999999989999
Q ss_pred eEEEEEecccccc
Q 029885 105 MGKAYLNLQPIIS 117 (186)
Q Consensus 105 lG~~~v~l~~l~~ 117 (186)
||++.+++++...
T Consensus 81 iG~~~i~l~~~~~ 93 (124)
T cd04037 81 IGETVIDLEDRFF 93 (124)
T ss_pred eEEEEEeeccccc
Confidence 9999999998765
No 79
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=99.74 E-value=9.2e-17 Score=113.27 Aligned_cols=98 Identities=23% Similarity=0.392 Sum_probs=79.9
Q ss_pred EEEEEEEEeEcCCCCC-CCCCCcEEEEEECC-------------eEEEeeeeeCCCCCee-cCeEEEEeeCCCceEEEEE
Q 029885 29 QLKVTVVQGKRLVIRD-FKSSDPYVVLKLGN-------------QMAKTKVINSCLNPVW-NEEHSLSLTEPVGVLSLEV 93 (186)
Q Consensus 29 ~L~v~i~~a~~L~~~~-~~~~dpy~~v~~~~-------------~~~~T~~~~~~~~P~w-~e~~~f~v~~~~~~l~v~v 93 (186)
.+.|.+++|++|+ .+ .|.+|||+++.+.. +.++|++++++.||.| ||+|.|.+... ..|.++|
T Consensus 2 ~~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~~~-~~L~v~V 79 (137)
T cd08691 2 SFSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGLPT-DVLEIEV 79 (137)
T ss_pred EEEEEEEEeCCCC-CccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcCCC-CEEEEEE
Confidence 4679999999998 66 89999999999932 3689999999999999 99999998643 5899999
Q ss_pred EEcCCCCC---CCeeEEEEEecccccccce---eeeEEEec
Q 029885 94 FDKDRFKA---DDKMGKAYLNLQPIISAAR---LRHLVHVS 128 (186)
Q Consensus 94 ~d~~~~~~---d~~lG~~~v~l~~l~~~~~---~~~~~~l~ 128 (186)
||++..++ +++||++.+++.++..+.. +..|+.+.
T Consensus 80 ~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~ 120 (137)
T cd08691 80 KDKFAKSRPIIRRFLGKLSIPVQRLLERHAIGDQELSYTLG 120 (137)
T ss_pred EecCCCCCccCCceEEEEEEEHHHhcccccCCceEEEEECC
Confidence 99765433 6899999999999986643 33444444
No 80
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=99.74 E-value=2.7e-17 Score=115.39 Aligned_cols=102 Identities=36% Similarity=0.490 Sum_probs=88.4
Q ss_pred eEEEEEEEEeEcCCCCC-CCCCCcEEEEEEC-----CeEEEeeeeeCCCCCeecCeEEEEeeCC--CceEEEEEEEcCCC
Q 029885 28 GQLKVTVVQGKRLVIRD-FKSSDPYVVLKLG-----NQMAKTKVINSCLNPVWNEEHSLSLTEP--VGVLSLEVFDKDRF 99 (186)
Q Consensus 28 ~~L~v~i~~a~~L~~~~-~~~~dpy~~v~~~-----~~~~~T~~~~~~~~P~w~e~~~f~v~~~--~~~l~v~v~d~~~~ 99 (186)
+.|.|+|++|++|+..+ .+.+|||+.+.+. ...++|++++++.+|.|||+|.|.+... ...|.|+|||++..
T Consensus 13 ~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~~~~l~v~v~d~~~~ 92 (131)
T cd04026 13 NKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPADKDRRLSIEVWDWDRT 92 (131)
T ss_pred CEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchhcCCEEEEEEEECCCC
Confidence 78999999999999888 7889999999995 2568999999999999999999998764 24899999999988
Q ss_pred CCCCeeEEEEEecccccccceeeeEEEecCC
Q 029885 100 KADDKMGKAYLNLQPIISAARLRHLVHVSSG 130 (186)
Q Consensus 100 ~~d~~lG~~~v~l~~l~~~~~~~~~~~l~~~ 130 (186)
+++++||++.++++++... ..+.||+|...
T Consensus 93 ~~~~~iG~~~~~l~~l~~~-~~~~w~~L~~~ 122 (131)
T cd04026 93 TRNDFMGSLSFGVSELIKM-PVDGWYKLLNQ 122 (131)
T ss_pred CCcceeEEEEEeHHHhCcC-ccCceEECcCc
Confidence 8899999999999999755 56667776543
No 81
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=99.74 E-value=8.7e-18 Score=118.56 Aligned_cols=101 Identities=26% Similarity=0.360 Sum_probs=83.6
Q ss_pred CcceEEEEEEEEeEcCCCCC---CCCCCcEEEEEECC-----eEEEeeeeeCCCCCeecCeEEEEeeCC---CceEEEEE
Q 029885 25 QPFGQLKVTVVQGKRLVIRD---FKSSDPYVVLKLGN-----QMAKTKVINSCLNPVWNEEHSLSLTEP---VGVLSLEV 93 (186)
Q Consensus 25 ~~~~~L~v~i~~a~~L~~~~---~~~~dpy~~v~~~~-----~~~~T~~~~~~~~P~w~e~~~f~v~~~---~~~l~v~v 93 (186)
+..+.|.|.|++|+||+..+ .+.+||||++++.. .+++|++++++.||+|||.|.|.+... +..|.|+|
T Consensus 12 ~~~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~~~L~~~~L~~~V 91 (138)
T cd08407 12 PAANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELPSELLAASSVELEV 91 (138)
T ss_pred CCCCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEECCHHHhCccEEEEEE
Confidence 55688999999999999987 24589999999843 257899999999999999999999864 23899999
Q ss_pred EEcCCCCCCCeeEEEEEecccccccceeeeEEEe
Q 029885 94 FDKDRFKADDKMGKAYLNLQPIISAARLRHLVHV 127 (186)
Q Consensus 94 ~d~~~~~~d~~lG~~~v~l~~l~~~~~~~~~~~l 127 (186)
||++.++++++||++.+.+.. .+...+.|.++
T Consensus 92 ~d~d~~~~~d~iG~v~lg~~~--~g~~~~hW~~m 123 (138)
T cd08407 92 LNQDSPGQSLPLGRCSLGLHT--SGTERQHWEEM 123 (138)
T ss_pred EeCCCCcCcceeceEEecCcC--CCcHHHHHHHH
Confidence 999999999999999999975 33344555444
No 82
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.73 E-value=1.2e-17 Score=118.19 Aligned_cols=104 Identities=23% Similarity=0.288 Sum_probs=85.1
Q ss_pred CCcceEEEEEEEEeEcCCCCC-CCCCCcEEEEEECC------eEEEeeeeeCCCCCeecCeEEEEeeCC---CceEEEEE
Q 029885 24 RQPFGQLKVTVVQGKRLVIRD-FKSSDPYVVLKLGN------QMAKTKVINSCLNPVWNEEHSLSLTEP---VGVLSLEV 93 (186)
Q Consensus 24 ~~~~~~L~v~i~~a~~L~~~~-~~~~dpy~~v~~~~------~~~~T~~~~~~~~P~w~e~~~f~v~~~---~~~l~v~v 93 (186)
....+.|.|+|++|+||+..+ .+.+||||++.+.. .+++|++++++.||.|||+|.|.+... ...|.|+|
T Consensus 11 ~~~~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l~~~~L~~~V 90 (138)
T cd08408 11 NALTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALFQLSEVTLMFSV 90 (138)
T ss_pred cCCCCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHHHhCccEEEEEE
Confidence 355689999999999999988 88899999999832 247999999999999999999999853 23899999
Q ss_pred EEcCCCCCCCeeEEEEEecccccccceeeeEEEec
Q 029885 94 FDKDRFKADDKMGKAYLNLQPIISAARLRHLVHVS 128 (186)
Q Consensus 94 ~d~~~~~~d~~lG~~~v~l~~l~~~~~~~~~~~l~ 128 (186)
||++.++++++||++.+++.....+ ..+.|+.+-
T Consensus 91 ~~~~~~~~~~~iG~v~l~~~~~~~~-~~~hW~~~l 124 (138)
T cd08408 91 YNKRKMKRKEMIGWFSLGLNSSGEE-EEEHWNEMK 124 (138)
T ss_pred EECCCCCCCcEEEEEEECCcCCCch-HHHHHHHHH
Confidence 9999999999999999988754322 234555553
No 83
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=99.73 E-value=1.6e-17 Score=117.31 Aligned_cols=101 Identities=33% Similarity=0.445 Sum_probs=84.1
Q ss_pred CcceEEEEEEEEeEcCCCCC-CCCCCcEEEEEEC--C---eEEEeeeeeCCCCCeecCeEEEEeeCCC---ceEEEEEEE
Q 029885 25 QPFGQLKVTVVQGKRLVIRD-FKSSDPYVVLKLG--N---QMAKTKVINSCLNPVWNEEHSLSLTEPV---GVLSLEVFD 95 (186)
Q Consensus 25 ~~~~~L~v~i~~a~~L~~~~-~~~~dpy~~v~~~--~---~~~~T~~~~~~~~P~w~e~~~f~v~~~~---~~l~v~v~d 95 (186)
+..+.|.|.|++|++|+..+ .+.+|||+++.+. . ..++|++++++.+|.|||+|.|.+.... ..|.|+|||
T Consensus 12 ~~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~v~d 91 (136)
T cd08402 12 PTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQIQKVHLIVTVLD 91 (136)
T ss_pred CCCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCHHHhCCCEEEEEEEe
Confidence 55689999999999999988 8899999999984 2 3578999999999999999999987432 279999999
Q ss_pred cCCCCCCCeeEEEEEecccccccceeeeEEEe
Q 029885 96 KDRFKADDKMGKAYLNLQPIISAARLRHLVHV 127 (186)
Q Consensus 96 ~~~~~~d~~lG~~~v~l~~l~~~~~~~~~~~l 127 (186)
++.++++++||.+.+++... +.....|+++
T Consensus 92 ~~~~~~~~~iG~~~i~~~~~--~~~~~~W~~~ 121 (136)
T cd08402 92 YDRIGKNDPIGKVVLGCNAT--GAELRHWSDM 121 (136)
T ss_pred CCCCCCCceeEEEEECCccC--ChHHHHHHHH
Confidence 99999999999999999864 3334455544
No 84
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=99.73 E-value=1.4e-17 Score=117.04 Aligned_cols=104 Identities=29% Similarity=0.398 Sum_probs=88.9
Q ss_pred CcceEEEEEEEEeEcCCCCC-CCCCCcEEEEEECC-----eEEEeeeeeCCCCCeecCeEEEEeeCCC---ceEEEEEEE
Q 029885 25 QPFGQLKVTVVQGKRLVIRD-FKSSDPYVVLKLGN-----QMAKTKVINSCLNPVWNEEHSLSLTEPV---GVLSLEVFD 95 (186)
Q Consensus 25 ~~~~~L~v~i~~a~~L~~~~-~~~~dpy~~v~~~~-----~~~~T~~~~~~~~P~w~e~~~f~v~~~~---~~l~v~v~d 95 (186)
+..+.|.|+|++|++|+..+ .+.+|||+++.+.. ..++|+++.++.+|.|||+|.|.+.... ..|.|+|||
T Consensus 11 ~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l~~~~l~~~v~d 90 (134)
T cd00276 11 PTAERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLEEVSLVITVVD 90 (134)
T ss_pred CCCCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHHhCCcEEEEEEEe
Confidence 34578999999999999988 88899999999843 2579999999999999999999988653 489999999
Q ss_pred cCCCCCCCeeEEEEEecccccccceeeeEEEecCC
Q 029885 96 KDRFKADDKMGKAYLNLQPIISAARLRHLVHVSSG 130 (186)
Q Consensus 96 ~~~~~~d~~lG~~~v~l~~l~~~~~~~~~~~l~~~ 130 (186)
.+..+++++||.+.+++++ .+...+.|+.|...
T Consensus 91 ~~~~~~~~~lG~~~i~l~~--~~~~~~~W~~l~~~ 123 (134)
T cd00276 91 KDSVGRNEVIGQVVLGPDS--GGEELEHWNEMLAS 123 (134)
T ss_pred cCCCCCCceeEEEEECCCC--CCcHHHHHHHHHhC
Confidence 9988889999999999999 55566777777544
No 85
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.73 E-value=9.1e-17 Score=111.50 Aligned_cols=100 Identities=28% Similarity=0.367 Sum_probs=85.1
Q ss_pred cceEEEEEEEEeEcCCCCC-CCCCCcEEEEEEC-----CeEEEeeeeeCCCCCeecCeEEEEeeCC----CceEEEEEEE
Q 029885 26 PFGQLKVTVVQGKRLVIRD-FKSSDPYVVLKLG-----NQMAKTKVINSCLNPVWNEEHSLSLTEP----VGVLSLEVFD 95 (186)
Q Consensus 26 ~~~~L~v~i~~a~~L~~~~-~~~~dpy~~v~~~-----~~~~~T~~~~~~~~P~w~e~~~f~v~~~----~~~l~v~v~d 95 (186)
..+.|.|+|++|++|+..+ .+.+|||+++.+. ...++|++++++.+|.|||.|.|..... ...+.|+|||
T Consensus 13 ~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~~v~d 92 (123)
T cd04035 13 ANSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEEDIQRKTLRLLVLD 92 (123)
T ss_pred CCCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHHhCCCEEEEEEEE
Confidence 3578999999999999888 7889999999983 2468999999999999999999963322 2489999999
Q ss_pred cCCCCCCCeeEEEEEecccccccceeeeEEE
Q 029885 96 KDRFKADDKMGKAYLNLQPIISAARLRHLVH 126 (186)
Q Consensus 96 ~~~~~~d~~lG~~~v~l~~l~~~~~~~~~~~ 126 (186)
++.+ ++++||.+.++++++..+..++.++.
T Consensus 93 ~~~~-~~~~iG~~~i~l~~l~~~~~~~~~~~ 122 (123)
T cd04035 93 EDRF-GNDFLGETRIPLKKLKPNQTKQFNIC 122 (123)
T ss_pred cCCc-CCeeEEEEEEEcccCCCCcceEeecc
Confidence 9988 88999999999999998877776643
No 86
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=99.73 E-value=1.7e-17 Score=117.12 Aligned_cols=102 Identities=22% Similarity=0.388 Sum_probs=81.1
Q ss_pred CcceEEEEEEEEeEcCCCCC-CCCCCcEEEEEEC--C---eEEEeeeeeCCCCCeecCeEEEEeeCCC---ceEEEEEEE
Q 029885 25 QPFGQLKVTVVQGKRLVIRD-FKSSDPYVVLKLG--N---QMAKTKVINSCLNPVWNEEHSLSLTEPV---GVLSLEVFD 95 (186)
Q Consensus 25 ~~~~~L~v~i~~a~~L~~~~-~~~~dpy~~v~~~--~---~~~~T~~~~~~~~P~w~e~~~f~v~~~~---~~l~v~v~d 95 (186)
+..+.|.|.|++|++|+..+ .+.+||||++.+. . .+++|++++++.||.|||+|.|.+.... ..|.|+|||
T Consensus 11 ~~~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l~~~~l~~~V~d 90 (135)
T cd08410 11 PSAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEELENVSLVFTVYG 90 (135)
T ss_pred CCCCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCHHHhCCCEEEEEEEe
Confidence 45588999999999999998 8899999999972 2 3578999999999999999999986432 269999999
Q ss_pred cCCCCCCCeeEEEEEecccccccceeeeEEEe
Q 029885 96 KDRFKADDKMGKAYLNLQPIISAARLRHLVHV 127 (186)
Q Consensus 96 ~~~~~~d~~lG~~~v~l~~l~~~~~~~~~~~l 127 (186)
++..+++++||++.+.......+ ..+.|+.+
T Consensus 91 ~d~~~~~~~iG~~~l~~~~~~~~-~~~~W~~l 121 (135)
T cd08410 91 HNVKSSNDFIGRIVIGQYSSGPS-ETNHWRRM 121 (135)
T ss_pred CCCCCCCcEEEEEEEcCccCCch-HHHHHHHH
Confidence 99999999999988665433322 23445444
No 87
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=99.72 E-value=2.4e-17 Score=116.11 Aligned_cols=101 Identities=26% Similarity=0.346 Sum_probs=83.0
Q ss_pred CcceEEEEEEEEeEcCCCCC-CCCCCcEEEEEECC-----eEEEeeeeeCCCCCeecCeEEEEeeCCC---ceEEEEEEE
Q 029885 25 QPFGQLKVTVVQGKRLVIRD-FKSSDPYVVLKLGN-----QMAKTKVINSCLNPVWNEEHSLSLTEPV---GVLSLEVFD 95 (186)
Q Consensus 25 ~~~~~L~v~i~~a~~L~~~~-~~~~dpy~~v~~~~-----~~~~T~~~~~~~~P~w~e~~~f~v~~~~---~~l~v~v~d 95 (186)
+..+.|+|+|++|++|+..+ .+.+|||+++++.. ..++|++++++.+|.|+|+|.|.+.... ..|.|+|||
T Consensus 11 ~~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~~~~~l~~~v~d 90 (134)
T cd08403 11 PTAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPENVDNVSLIIAVVD 90 (134)
T ss_pred CCCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHHHhCCCEEEEEEEE
Confidence 45689999999999999999 88999999999832 3578999999999999999999986432 268999999
Q ss_pred cCCCCCCCeeEEEEEecccccccceeeeEEEe
Q 029885 96 KDRFKADDKMGKAYLNLQPIISAARLRHLVHV 127 (186)
Q Consensus 96 ~~~~~~d~~lG~~~v~l~~l~~~~~~~~~~~l 127 (186)
++.++++++||.+.+++... +.....|+++
T Consensus 91 ~~~~~~~~~IG~~~l~~~~~--~~~~~~w~~~ 120 (134)
T cd08403 91 YDRVGHNELIGVCRVGPNAD--GQGREHWNEM 120 (134)
T ss_pred CCCCCCCceeEEEEECCCCC--CchHHHHHHH
Confidence 99999999999999988732 3334455544
No 88
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=99.72 E-value=2.2e-18 Score=138.17 Aligned_cols=95 Identities=39% Similarity=0.527 Sum_probs=85.2
Q ss_pred cceEEEEEEEEeEcCCCCC-CCCCCcEEEEEE-----CCeEEEeeeeeCCCCCeecCeEEEEeeCCCc--eEEEEEEEcC
Q 029885 26 PFGQLKVTVVQGKRLVIRD-FKSSDPYVVLKL-----GNQMAKTKVINSCLNPVWNEEHSLSLTEPVG--VLSLEVFDKD 97 (186)
Q Consensus 26 ~~~~L~v~i~~a~~L~~~~-~~~~dpy~~v~~-----~~~~~~T~~~~~~~~P~w~e~~~f~v~~~~~--~l~v~v~d~~ 97 (186)
....|+|.|.+|+||.+++ +|.+|||+++++ +..+++|++++.++||+|||+|.|.+...+. .|.|+|||+|
T Consensus 178 ~~~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtftf~Lkp~DkdrRlsiEvWDWD 257 (683)
T KOG0696|consen 178 KRDVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETFTFKLKPSDKDRRLSIEVWDWD 257 (683)
T ss_pred cCceEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCccccceeEEecccccccceeEEEEeccc
Confidence 3468899999999999999 999999999999 2356899999999999999999999987644 9999999999
Q ss_pred CCCCCCeeEEEEEecccccccce
Q 029885 98 RFKADDKMGKAYLNLQPIISAAR 120 (186)
Q Consensus 98 ~~~~d~~lG~~~v~l~~l~~~~~ 120 (186)
..++++|+|...+.++++.....
T Consensus 258 rTsRNDFMGslSFgisEl~K~p~ 280 (683)
T KOG0696|consen 258 RTSRNDFMGSLSFGISELQKAPV 280 (683)
T ss_pred ccccccccceecccHHHHhhcch
Confidence 99999999999999999877643
No 89
>PLN03008 Phospholipase D delta
Probab=99.72 E-value=1.3e-16 Score=137.65 Aligned_cols=125 Identities=26% Similarity=0.476 Sum_probs=102.8
Q ss_pred cceEEEEEEEEeEcCCCCC-------------------------------------------CCCCCcEEEEEECCe-EE
Q 029885 26 PFGQLKVTVVQGKRLVIRD-------------------------------------------FKSSDPYVVLKLGNQ-MA 61 (186)
Q Consensus 26 ~~~~L~v~i~~a~~L~~~~-------------------------------------------~~~~dpy~~v~~~~~-~~ 61 (186)
..|.|.++|.+|++|+.++ .+.+||||++.+++. ..
T Consensus 12 lhg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tSDPYV~I~Lg~~rv~ 91 (868)
T PLN03008 12 LHGDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDKNIRSHRKVITSDPYVTVVVPQATLA 91 (868)
T ss_pred eecccEEEEEEcccCCchhHHHHHHHhhcccccccccccccccccccccccccccccccccccCCCCceEEEEECCccee
Confidence 3588999999999887511 135699999999876 46
Q ss_pred EeeeeeCCCCCeecCeEEEEeeCCCceEEEEEEEcCCCCCCCeeEEEEEecccccccceeeeEEEecCCCeeeEEEeeCC
Q 029885 62 KTKVINSCLNPVWNEEHSLSLTEPVGVLSLEVFDKDRFKADDKMGKAYLNLQPIISAARLRHLVHVSSGETPLRKIIPDS 141 (186)
Q Consensus 62 ~T~~~~~~~~P~w~e~~~f~v~~~~~~l~v~v~d~~~~~~d~~lG~~~v~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~ 141 (186)
+|++++++.||.|||+|.|.+..+...|.|+|||++.++ +++||++.++++++..+...+.|++|...
T Consensus 92 RTrVi~n~~NPvWNE~F~f~vah~~s~L~f~VkD~D~~g-aD~IG~a~IPL~~L~~Ge~vd~Wl~Ll~~----------- 159 (868)
T PLN03008 92 RTRVLKNSQEPLWDEKFNISIAHPFAYLEFQVKDDDVFG-AQIIGTAKIPVRDIASGERISGWFPVLGA----------- 159 (868)
T ss_pred eEEeCCCCCCCCcceeEEEEecCCCceEEEEEEcCCccC-CceeEEEEEEHHHcCCCCceEEEEEcccc-----------
Confidence 999999999999999999999987779999999999995 68999999999999999888888887654
Q ss_pred CCeecccceEEEECCEEEEEEeEEecccceecEEEEEEEEeCC
Q 029885 142 ENCLARESSIICINGEVVQNVWLRLCEVESGEIELKVKIVDAP 184 (186)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~G~l~l~l~~~~~~ 184 (186)
+++ .....|+|+++|+|.+..
T Consensus 160 -------------~~k---------p~k~~~kl~v~lqf~pv~ 180 (868)
T PLN03008 160 -------------SGK---------PPKAETAIFIDMKFTPFD 180 (868)
T ss_pred -------------CCC---------CCCCCcEEEEEEEEEEcc
Confidence 110 122458999999998865
No 90
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.72 E-value=4.1e-17 Score=115.23 Aligned_cols=102 Identities=29% Similarity=0.461 Sum_probs=84.8
Q ss_pred CcceEEEEEEEEeEcCCCCC-CCCCCcEEEEEEC--C---eEEEeeeeeCCCCCeecCeEEEEeeCC---CceEEEEEEE
Q 029885 25 QPFGQLKVTVVQGKRLVIRD-FKSSDPYVVLKLG--N---QMAKTKVINSCLNPVWNEEHSLSLTEP---VGVLSLEVFD 95 (186)
Q Consensus 25 ~~~~~L~v~i~~a~~L~~~~-~~~~dpy~~v~~~--~---~~~~T~~~~~~~~P~w~e~~~f~v~~~---~~~l~v~v~d 95 (186)
+..+.|.|+|++|++|+..+ .+.+|||+++.+. + .+++|++++++.+|.|||+|.|.+... ...|.|+|||
T Consensus 12 ~~~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~~~~~~~l~~~v~d 91 (136)
T cd08405 12 PTANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLERLRETTLIITVMD 91 (136)
T ss_pred CCCCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEeCCHHHhCCCEEEEEEEE
Confidence 45688999999999999888 8899999999982 2 357899999999999999999998632 2489999999
Q ss_pred cCCCCCCCeeEEEEEecccccccceeeeEEEec
Q 029885 96 KDRFKADDKMGKAYLNLQPIISAARLRHLVHVS 128 (186)
Q Consensus 96 ~~~~~~d~~lG~~~v~l~~l~~~~~~~~~~~l~ 128 (186)
++.++++++||++.+++.+. +...+.|+++.
T Consensus 92 ~~~~~~~~~lG~~~i~~~~~--~~~~~~w~~~~ 122 (136)
T cd08405 92 KDRLSRNDLIGKIYLGWKSG--GLELKHWKDML 122 (136)
T ss_pred CCCCCCCcEeEEEEECCccC--CchHHHHHHHH
Confidence 99998999999999999876 33345555553
No 91
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=99.71 E-value=4.3e-17 Score=115.28 Aligned_cols=105 Identities=24% Similarity=0.331 Sum_probs=86.4
Q ss_pred CcceEEEEEEEEeEcCCCCCCCCCCcEEEEEECC-----eEEEeeeeeCCCCCeecCeEEEEeeCC--C-ceEEEEEEEc
Q 029885 25 QPFGQLKVTVVQGKRLVIRDFKSSDPYVVLKLGN-----QMAKTKVINSCLNPVWNEEHSLSLTEP--V-GVLSLEVFDK 96 (186)
Q Consensus 25 ~~~~~L~v~i~~a~~L~~~~~~~~dpy~~v~~~~-----~~~~T~~~~~~~~P~w~e~~~f~v~~~--~-~~l~v~v~d~ 96 (186)
+..+.|.|.|++|++|+..+.+.+||||++.+.. .+++|++++++.||.|||.|.|.+... . ..|.|+||++
T Consensus 12 ~~~~~L~V~V~~a~nL~~~~~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~l~~~~L~~~V~~~ 91 (137)
T cd08409 12 PTLNRLTVVVLRARGLRQLDHAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSRQLDTASLSLSVMQS 91 (137)
T ss_pred CCCCeEEEEEEEecCCCcccCCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHHHhCccEEEEEEEeC
Confidence 4568899999999999887766789999999842 357899999999999999999998743 2 3899999999
Q ss_pred CCCCCCCeeEEEEEecccccccceeeeEEEecC
Q 029885 97 DRFKADDKMGKAYLNLQPIISAARLRHLVHVSS 129 (186)
Q Consensus 97 ~~~~~d~~lG~~~v~l~~l~~~~~~~~~~~l~~ 129 (186)
+..+++++||++.+.......+...+.|.++-.
T Consensus 92 ~~~~~~~~lG~v~ig~~~~~~~~~~~hW~~~~~ 124 (137)
T cd08409 92 GGVRKSKLLGRVVLGPFMYARGKELEHWNDMLS 124 (137)
T ss_pred CCCCCcceEEEEEECCcccCCChHHHHHHHHHh
Confidence 998899999999998766665665666655543
No 92
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.71 E-value=2.9e-17 Score=152.60 Aligned_cols=101 Identities=22% Similarity=0.424 Sum_probs=87.6
Q ss_pred cceEEEEEEEEeEcCCCCCCCCCCcEEEEEECCe-EEEeeeeeCCCCCeecCeEEEEeeCCC--ceEEEEEEEcCCCCCC
Q 029885 26 PFGQLKVTVVQGKRLVIRDFKSSDPYVVLKLGNQ-MAKTKVINSCLNPVWNEEHSLSLTEPV--GVLSLEVFDKDRFKAD 102 (186)
Q Consensus 26 ~~~~L~v~i~~a~~L~~~~~~~~dpy~~v~~~~~-~~~T~~~~~~~~P~w~e~~~f~v~~~~--~~l~v~v~d~~~~~~d 102 (186)
..|.|.|+|++|.+|. .+.+.+||||++.++++ +.+|++++++.||.|||+|.|.+..+. ..+.++|||+|.++ +
T Consensus 1978 ~~G~L~V~V~~a~nl~-~~~~~sdPyv~l~~g~~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d~f~-k 2055 (2102)
T PLN03200 1978 LPGSLTVTIKRGNNLK-QSMGNTNAFCKLTLGNGPPRQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKNTFG-K 2055 (2102)
T ss_pred CCcceEEEEeeccccc-cccCCCCCeEEEEECCCCcccccccCCCCCCCcccceeeeecCCCCCCceEEEEEecCccC-C
Confidence 3499999999999998 33789999999999965 789999999999999999998888765 47999999999994 5
Q ss_pred CeeEEEEEecccccccceeeeEEEec
Q 029885 103 DKMGKAYLNLQPIISAARLRHLVHVS 128 (186)
Q Consensus 103 ~~lG~~~v~l~~l~~~~~~~~~~~l~ 128 (186)
+.+|.+.+++.++..++....||+|.
T Consensus 2056 d~~G~~~i~l~~vv~~~~~~~~~~L~ 2081 (2102)
T PLN03200 2056 SSLGKVTIQIDRVVMEGTYSGEYSLN 2081 (2102)
T ss_pred CCCceEEEEHHHHhcCceeeeeeecC
Confidence 59999999999998887666665554
No 93
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=99.70 E-value=1.2e-15 Score=106.38 Aligned_cols=90 Identities=32% Similarity=0.499 Sum_probs=77.8
Q ss_pred eEEEEEEEEeEcCCCCC---CCCCCcEEEEEE------CCeEEEeeeeeCCC-CCeecCeEEEEeeCCCc-eEEEEEEEc
Q 029885 28 GQLKVTVVQGKRLVIRD---FKSSDPYVVLKL------GNQMAKTKVINSCL-NPVWNEEHSLSLTEPVG-VLSLEVFDK 96 (186)
Q Consensus 28 ~~L~v~i~~a~~L~~~~---~~~~dpy~~v~~------~~~~~~T~~~~~~~-~P~w~e~~~f~v~~~~~-~l~v~v~d~ 96 (186)
..|+|+|++|++|+..+ .+..|||+++++ ...+++|+++.++. +|.|+|+|.|.+..+.. .|.++|||+
T Consensus 2 ~~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d~ 81 (128)
T cd00275 2 LTLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDE 81 (128)
T ss_pred eEEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEeC
Confidence 46899999999999876 568899999999 34568999988765 99999999999986654 789999999
Q ss_pred CCCCCCCeeEEEEEeccccccc
Q 029885 97 DRFKADDKMGKAYLNLQPIISA 118 (186)
Q Consensus 97 ~~~~~d~~lG~~~v~l~~l~~~ 118 (186)
+.. ++++||.+.++++++..+
T Consensus 82 ~~~-~~~~iG~~~~~l~~l~~g 102 (128)
T cd00275 82 DSG-DDDFLGQACLPLDSLRQG 102 (128)
T ss_pred CCC-CCcEeEEEEEEhHHhcCc
Confidence 988 899999999999988554
No 94
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=99.67 E-value=1e-15 Score=104.18 Aligned_cols=88 Identities=27% Similarity=0.483 Sum_probs=73.9
Q ss_pred EEEEEeEcCCCCC-CCCCCcEEEEEECC------eEEEeeeeeCCCCCeecCeEEEEeeC-----CCceEEEEEEEcCCC
Q 029885 32 VTVVQGKRLVIRD-FKSSDPYVVLKLGN------QMAKTKVINSCLNPVWNEEHSLSLTE-----PVGVLSLEVFDKDRF 99 (186)
Q Consensus 32 v~i~~a~~L~~~~-~~~~dpy~~v~~~~------~~~~T~~~~~~~~P~w~e~~~f~v~~-----~~~~l~v~v~d~~~~ 99 (186)
+-.++|++|+..+ .+.+|||+++++.. ..++|++++++.+|.|| +|.|.... ....|.|+|||++..
T Consensus 4 ~~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~~ 82 (110)
T cd04047 4 ELQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDSS 82 (110)
T ss_pred EEEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCCC
Confidence 4456899999999 88999999999843 24899999999999999 68877542 134899999999999
Q ss_pred CCCCeeEEEEEecccccccce
Q 029885 100 KADDKMGKAYLNLQPIISAAR 120 (186)
Q Consensus 100 ~~d~~lG~~~v~l~~l~~~~~ 120 (186)
++|++||++.++++++..+..
T Consensus 83 ~~d~~iG~~~~~l~~l~~~~~ 103 (110)
T cd04047 83 GKHDLIGEFETTLDELLKSSP 103 (110)
T ss_pred CCCcEEEEEEEEHHHHhcCCC
Confidence 999999999999999985543
No 95
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=99.65 E-value=3.4e-15 Score=101.76 Aligned_cols=80 Identities=31% Similarity=0.518 Sum_probs=68.4
Q ss_pred EEEEEEEeEcCCCCCCCCCCcEEEEEECC-----eEEEeeeeeCCCCCeecCeEEEEeeCCCceEEEEEEEc-------C
Q 029885 30 LKVTVVQGKRLVIRDFKSSDPYVVLKLGN-----QMAKTKVINSCLNPVWNEEHSLSLTEPVGVLSLEVFDK-------D 97 (186)
Q Consensus 30 L~v~i~~a~~L~~~~~~~~dpy~~v~~~~-----~~~~T~~~~~~~~P~w~e~~~f~v~~~~~~l~v~v~d~-------~ 97 (186)
|.|+|.+|+||+ +.+||||++.+.. ..++|++++++.||.|||+|.|.+.. ...|.+.|||+ +
T Consensus 1 L~V~V~~A~~L~----~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~~-s~~L~~~v~d~~~~~~~~d 75 (118)
T cd08686 1 LNVIVHSAQGFK----QSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELEG-SQTLRILCYEKCYSKVKLD 75 (118)
T ss_pred CEEEEEeCCCCC----CCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeCC-CCEEEEEEEEccccccccc
Confidence 579999999995 5689999998842 45899999999999999999999974 46999999998 4
Q ss_pred CCCCCCeeEEEEEeccc
Q 029885 98 RFKADDKMGKAYLNLQP 114 (186)
Q Consensus 98 ~~~~d~~lG~~~v~l~~ 114 (186)
..+.|+++|.+.+.|+.
T Consensus 76 ~~~~d~~~G~g~i~Ld~ 92 (118)
T cd08686 76 GEGTDAIMGKGQIQLDP 92 (118)
T ss_pred ccCcccEEEEEEEEECH
Confidence 56789999888888764
No 96
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=99.61 E-value=4.8e-15 Score=95.48 Aligned_cols=80 Identities=40% Similarity=0.623 Sum_probs=72.0
Q ss_pred EEEEEEEeEcCCCCC-CCCCCcEEEEEECC---eEEEeeeeeCCCCCeecCeEEEEeeCCCc-eEEEEEEEcCCCCCCCe
Q 029885 30 LKVTVVQGKRLVIRD-FKSSDPYVVLKLGN---QMAKTKVINSCLNPVWNEEHSLSLTEPVG-VLSLEVFDKDRFKADDK 104 (186)
Q Consensus 30 L~v~i~~a~~L~~~~-~~~~dpy~~v~~~~---~~~~T~~~~~~~~P~w~e~~~f~v~~~~~-~l~v~v~d~~~~~~d~~ 104 (186)
|+|+|++|++|+..+ .+.++||+++.+.. ..++|+++.++.+|.|+|+|.|.+..... .|.|+|||++..+++++
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~~~V~~~~~~~~~~~ 80 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFPLDDPDLDSLSFEVWDKDSFGKDEL 80 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEEESHGCGTEEEEEEEEETSSSSEEE
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeeccccceeeeeeeeeeecccccceEEEEEECCCCCCCCE
Confidence 789999999999988 78999999999966 67999999999999999999999776544 89999999999988999
Q ss_pred eEEEE
Q 029885 105 MGKAY 109 (186)
Q Consensus 105 lG~~~ 109 (186)
||++.
T Consensus 81 iG~~~ 85 (85)
T PF00168_consen 81 IGEVK 85 (85)
T ss_dssp EEEEE
T ss_pred EEEEC
Confidence 99873
No 97
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=99.53 E-value=2e-13 Score=89.72 Aligned_cols=97 Identities=39% Similarity=0.654 Sum_probs=83.2
Q ss_pred EEEEEEEeEcCCCCC-CCCCCcEEEEEECC-eEEEeeeeeCCCCCeecCeEEEEeeC-CCceEEEEEEEcCCCCCCCeeE
Q 029885 30 LKVTVVQGKRLVIRD-FKSSDPYVVLKLGN-QMAKTKVINSCLNPVWNEEHSLSLTE-PVGVLSLEVFDKDRFKADDKMG 106 (186)
Q Consensus 30 L~v~i~~a~~L~~~~-~~~~dpy~~v~~~~-~~~~T~~~~~~~~P~w~e~~~f~v~~-~~~~l~v~v~d~~~~~~d~~lG 106 (186)
|.|.|++|+++.... ....+||+.+.+.. ..++|.+..++.+|.|++.|.|.+.. ....+.++||+.+..+.+.++|
T Consensus 1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~~~~~~T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~~~~~~~ig 80 (102)
T cd00030 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDKDRFSKDDFLG 80 (102)
T ss_pred CEEEEEeeeCCCCcCCCCCCCcEEEEEeccCceEecceeCCCCCCcccceEEEEccCCCCCEEEEEEEecCCCCCCceeE
Confidence 468999999998766 67899999999987 78999999999999999999999987 4458999999999887789999
Q ss_pred EEEEeccccc-ccceeeeEEE
Q 029885 107 KAYLNLQPII-SAARLRHLVH 126 (186)
Q Consensus 107 ~~~v~l~~l~-~~~~~~~~~~ 126 (186)
.+.+++.++. .......|++
T Consensus 81 ~~~~~l~~l~~~~~~~~~~~~ 101 (102)
T cd00030 81 EVEIPLSELLDSGKEGELWLP 101 (102)
T ss_pred EEEEeHHHhhhcCCcCcceec
Confidence 9999999988 5554555543
No 98
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=99.52 E-value=2.3e-13 Score=89.78 Aligned_cols=92 Identities=38% Similarity=0.682 Sum_probs=80.9
Q ss_pred EEEEEEEeEcCCCCC-CCCCCcEEEEEECCe---EEEeeeeeCCCCCeecCeEEEEeeCC-CceEEEEEEEcCCCCCCCe
Q 029885 30 LKVTVVQGKRLVIRD-FKSSDPYVVLKLGNQ---MAKTKVINSCLNPVWNEEHSLSLTEP-VGVLSLEVFDKDRFKADDK 104 (186)
Q Consensus 30 L~v~i~~a~~L~~~~-~~~~dpy~~v~~~~~---~~~T~~~~~~~~P~w~e~~~f~v~~~-~~~l~v~v~d~~~~~~d~~ 104 (186)
+.|.|++|++|.... .+..+||+.+.+... ..+|++..++.+|.|+++|.|.+... ...|.|+||+....+.+.+
T Consensus 2 l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~~~~~~~ 81 (101)
T smart00239 2 LTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVYDKDRFGRDDF 81 (101)
T ss_pred eEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcccCEEEEEEEecCCccCCce
Confidence 679999999998877 567899999999764 79999999999999999999999887 5699999999998877899
Q ss_pred eEEEEEeccccccccee
Q 029885 105 MGKAYLNLQPIISAARL 121 (186)
Q Consensus 105 lG~~~v~l~~l~~~~~~ 121 (186)
+|.+.+++.++..+..+
T Consensus 82 ~G~~~~~l~~~~~~~~~ 98 (101)
T smart00239 82 IGQVTIPLSDLLLGGRH 98 (101)
T ss_pred eEEEEEEHHHcccCccc
Confidence 99999999988766543
No 99
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.49 E-value=2.2e-13 Score=95.14 Aligned_cols=91 Identities=29% Similarity=0.337 Sum_probs=76.5
Q ss_pred EEEEEEEEeEcCCCCC---CC--CCCcEEEEEECC---eEEEeeeeeCCCC--CeecCeEEEEeeC--------------
Q 029885 29 QLKVTVVQGKRLVIRD---FK--SSDPYVVLKLGN---QMAKTKVINSCLN--PVWNEEHSLSLTE-------------- 84 (186)
Q Consensus 29 ~L~v~i~~a~~L~~~~---~~--~~dpy~~v~~~~---~~~~T~~~~~~~~--P~w~e~~~f~v~~-------------- 84 (186)
.|+|.|.+|++++..+ .| .+|||+++.+.. .+++|.++.++++ |.||+.|.|.+..
T Consensus 1 eLRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~ 80 (133)
T cd08374 1 ELRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEH 80 (133)
T ss_pred CEEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeecc
Confidence 3889999999966543 45 599999999954 5699999999999 9999999988765
Q ss_pred -------C---CceEEEEEEEcCCCCCCCeeEEEEEecccccccc
Q 029885 85 -------P---VGVLSLEVFDKDRFKADDKMGKAYLNLQPIISAA 119 (186)
Q Consensus 85 -------~---~~~l~v~v~d~~~~~~d~~lG~~~v~l~~l~~~~ 119 (186)
. ...|.++|||+|.+++|++||.++++|..+..+.
T Consensus 81 ~~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l~~~~ 125 (133)
T cd08374 81 FWSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSILPRPA 125 (133)
T ss_pred ccccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhccccc
Confidence 1 1289999999999999999999999999876553
No 100
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=99.48 E-value=1.4e-13 Score=115.80 Aligned_cols=100 Identities=23% Similarity=0.351 Sum_probs=90.1
Q ss_pred eEEEEEEEEeEcCCCCC-CCCCCcEEEEEECCe-EEEeeeeeCCCCCeecCeEEEEeeCCCceEEEEEEEcCCCCCCCee
Q 029885 28 GQLKVTVVQGKRLVIRD-FKSSDPYVVLKLGNQ-MAKTKVINSCLNPVWNEEHSLSLTEPVGVLSLEVFDKDRFKADDKM 105 (186)
Q Consensus 28 ~~L~v~i~~a~~L~~~~-~~~~dpy~~v~~~~~-~~~T~~~~~~~~P~w~e~~~f~v~~~~~~l~v~v~d~~~~~~d~~l 105 (186)
..|.|+|.+|++|+..+ .|..||||.|.+++. ..+|.++.+++.|.|.|+|.|.++.....|.|.|||.| +++|+.|
T Consensus 5 ~sl~vki~E~knL~~~~~~g~~D~yC~v~lD~E~v~RT~tv~ksL~PF~gEe~~~~iP~~F~~l~fYv~D~d-~~~D~~I 83 (800)
T KOG2059|consen 5 QSLKVKIGEAKNLPSYGPSGMRDCYCTVNLDQEEVCRTATVEKSLCPFFGEEFYFEIPRTFRYLSFYVWDRD-LKRDDII 83 (800)
T ss_pred cceeEEEeecccCCCCCCCCCcCcceEEeecchhhhhhhhhhhhcCCccccceEEecCcceeeEEEEEeccc-ccccccc
Confidence 46899999999999999 999999999999765 58999999999999999999999988789999999999 8899999
Q ss_pred EEEEEecccccccceeeeEEEec
Q 029885 106 GKAYLNLQPIISAARLRHLVHVS 128 (186)
Q Consensus 106 G~~~v~l~~l~~~~~~~~~~~l~ 128 (186)
|.+.+.=+++......+.|+.|.
T Consensus 84 GKvai~re~l~~~~~~d~W~~L~ 106 (800)
T KOG2059|consen 84 GKVAIKREDLHMYPGKDTWFSLQ 106 (800)
T ss_pred ceeeeeHHHHhhCCCCccceecc
Confidence 99999999887776666666654
No 101
>PLN02223 phosphoinositide phospholipase C
Probab=99.46 E-value=2.5e-12 Score=107.30 Aligned_cols=96 Identities=29% Similarity=0.473 Sum_probs=80.2
Q ss_pred ceEEEEEEEEeEcCCCC-----C-CCCCCcEEEEEEC-----CeEEEeeeeeCCCCCeecCeEEEEeeCCCc-eEEEEEE
Q 029885 27 FGQLKVTVVQGKRLVIR-----D-FKSSDPYVVLKLG-----NQMAKTKVINSCLNPVWNEEHSLSLTEPVG-VLSLEVF 94 (186)
Q Consensus 27 ~~~L~v~i~~a~~L~~~-----~-~~~~dpy~~v~~~-----~~~~~T~~~~~~~~P~w~e~~~f~v~~~~~-~l~v~v~ 94 (186)
...|.|+|+.|.+++.. + ...+|||++|.+. ..+++|.+..++.||.|||+|.|.+..++. .|.|+|+
T Consensus 408 ~~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PELAlLrf~V~ 487 (537)
T PLN02223 408 VKILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDLALISFEVY 487 (537)
T ss_pred ceEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCceEEEEEEE
Confidence 46799999999987521 2 3467999999993 245678877789999999999999998877 7899999
Q ss_pred EcCCCCCCCeeEEEEEecccccccceee
Q 029885 95 DKDRFKADDKMGKAYLNLQPIISAARLR 122 (186)
Q Consensus 95 d~~~~~~d~~lG~~~v~l~~l~~~~~~~ 122 (186)
|+|..+.++|+|+..+|+..+..+.++.
T Consensus 488 D~D~~~~ddfiGQ~~LPv~~Lr~GyR~V 515 (537)
T PLN02223 488 DYEVSTADAFCGQTCLPVSELIEGIRAV 515 (537)
T ss_pred ecCCCCCCcEEEEEecchHHhcCCceeE
Confidence 9999888999999999999988876543
No 102
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=99.44 E-value=1.2e-12 Score=111.54 Aligned_cols=96 Identities=30% Similarity=0.457 Sum_probs=81.3
Q ss_pred EEEEEEEEeEcCCCCC-----CCCCCcEEEEEECC-----eEEEeee-eeCCCCCeecCeEEEEeeCCCc-eEEEEEEEc
Q 029885 29 QLKVTVVQGKRLVIRD-----FKSSDPYVVLKLGN-----QMAKTKV-INSCLNPVWNEEHSLSLTEPVG-VLSLEVFDK 96 (186)
Q Consensus 29 ~L~v~i~~a~~L~~~~-----~~~~dpy~~v~~~~-----~~~~T~~-~~~~~~P~w~e~~~f~v~~~~~-~l~v~v~d~ 96 (186)
+|.|+|+++.+++... ...+|||+.|.+.+ .+.+|++ ..++-+|.|+|+|.|.+..++. .|.|.|+|+
T Consensus 617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V~d~ 696 (746)
T KOG0169|consen 617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEVHDY 696 (746)
T ss_pred eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEEEEec
Confidence 7999999999765543 24689999999833 4588994 5569999999999999999987 779999999
Q ss_pred CCCCCCCeeEEEEEecccccccceeeeE
Q 029885 97 DRFKADDKMGKAYLNLQPIISAARLRHL 124 (186)
Q Consensus 97 ~~~~~d~~lG~~~v~l~~l~~~~~~~~~ 124 (186)
|..++|+|+|+..+|+..+..+.++..-
T Consensus 697 d~~~~ddF~GQ~tlP~~~L~~GyRhVpL 724 (746)
T KOG0169|consen 697 DYIGKDDFIGQTTLPVSELRQGYRHVPL 724 (746)
T ss_pred CCCCcccccceeeccHHHhhCceeeeee
Confidence 9999999999999999999888776543
No 103
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=99.41 E-value=1.6e-12 Score=114.72 Aligned_cols=120 Identities=23% Similarity=0.386 Sum_probs=97.3
Q ss_pred CcccccccccccceeeeccccccCCcceEEEEEEEEeEcCCCCC---CCCCCcEEEEEECC-eEEEeeeeeCCCCCeecC
Q 029885 1 MFCSFLCSECQVLKAIHLRNCIMRQPFGQLKVTVVQGKRLVIRD---FKSSDPYVVLKLGN-QMAKTKVINSCLNPVWNE 76 (186)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~v~i~~a~~L~~~~---~~~~dpy~~v~~~~-~~~~T~~~~~~~~P~w~e 76 (186)
|++.|-.+.=++...+.-. .....|++.|+|.+|++|...+ .+..|||+.+...+ ...+|++++++.||.|||
T Consensus 412 ml~~Pnsl~idi~~~m~~~---s~~aIGVv~vkI~sa~~lk~~d~~i~~~vDpyit~~~~~r~~gkT~v~~nt~nPvwNE 488 (1227)
T COG5038 412 MLLPPNSLTIDISQIMAGD---SGTAIGVVEVKIKSAEGLKKSDSTINGTVDPYITVTFSDRVIGKTRVKKNTLNPVWNE 488 (1227)
T ss_pred eeeCCceEEEcHHHhhccc---cCCeeEEEEEEEeeccCcccccccccCCCCceEEEEeccccCCccceeeccCCccccc
Confidence 4555655543333222221 4467899999999999999887 78999999999754 347999999999999999
Q ss_pred eEEEEeeCCCceEEEEEEEcCCCCCCCeeEEEEEecccccccceeee
Q 029885 77 EHSLSLTEPVGVLSLEVFDKDRFKADDKMGKAYLNLQPIISAARLRH 123 (186)
Q Consensus 77 ~~~f~v~~~~~~l~v~v~d~~~~~~d~~lG~~~v~l~~l~~~~~~~~ 123 (186)
++.+.+..-...|.++|||.+...+|+.+|.+.++|..+.....+.+
T Consensus 489 t~Yi~lns~~d~L~LslyD~n~~~sd~vvG~~~l~L~~L~~~~~~~n 535 (1227)
T COG5038 489 TFYILLNSFTDPLNLSLYDFNSFKSDKVVGSTQLDLALLHQNPVKKN 535 (1227)
T ss_pred eEEEEecccCCceeEEEEeccccCCcceeeeEEechHHhhhcccccc
Confidence 99999998778999999999888899999999999999887766544
No 104
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.41 E-value=5.6e-13 Score=111.73 Aligned_cols=104 Identities=24% Similarity=0.488 Sum_probs=91.5
Q ss_pred CcceEEEEEEEEeEcCCCCC-CCCCCcEEEEEECCeEEEeeeeeCCCCCeecCeEEEEeeCCCceEEEEEEEcCCC----
Q 029885 25 QPFGQLKVTVVQGKRLVIRD-FKSSDPYVVLKLGNQMAKTKVINSCLNPVWNEEHSLSLTEPVGVLSLEVFDKDRF---- 99 (186)
Q Consensus 25 ~~~~~L~v~i~~a~~L~~~~-~~~~dpy~~v~~~~~~~~T~~~~~~~~P~w~e~~~f~v~~~~~~l~v~v~d~~~~---- 99 (186)
.....++++++.|.+|..++ .|.+|||+...+++.+.+|+.+...+||+|||.|+|+.++....+++.|||.|.-
T Consensus 292 kwsakitltvlcaqgl~akdktg~sdpyvt~qv~ktkrrtrti~~~lnpvw~ekfhfechnstdrikvrvwded~dlksk 371 (1283)
T KOG1011|consen 292 KWSAKITLTVLCAQGLIAKDKTGKSDPYVTAQVGKTKRRTRTIHQELNPVWNEKFHFECHNSTDRIKVRVWDEDNDLKSK 371 (1283)
T ss_pred ccceeeEEeeeecccceecccCCCCCCcEEEeecccchhhHhhhhccchhhhhheeeeecCCCceeEEEEecCcccHHHH
Confidence 34578999999999999999 9999999999999999999999999999999999999999878999999998752
Q ss_pred -------CCCCeeEEEEEecccccccceeeeEEEecCC
Q 029885 100 -------KADDKMGKAYLNLQPIISAARLRHLVHVSSG 130 (186)
Q Consensus 100 -------~~d~~lG~~~v~l~~l~~~~~~~~~~~l~~~ 130 (186)
..|+|+|+..|.+..+ ++.++.||.|+..
T Consensus 372 lrqkl~resddflgqtvievrtl--sgemdvwynlekr 407 (1283)
T KOG1011|consen 372 LRQKLTRESDDFLGQTVIEVRTL--SGEMDVWYNLEKR 407 (1283)
T ss_pred HHHHhhhcccccccceeEEEEec--ccchhhhcchhhc
Confidence 3588999999888766 4557788888754
No 105
>PLN02270 phospholipase D alpha
Probab=99.38 E-value=1e-11 Score=107.56 Aligned_cols=104 Identities=19% Similarity=0.336 Sum_probs=89.2
Q ss_pred cceEEEEEEEEeEcCCCC-----------------C--CCCCCcEEEEEECCeE-EEeeeeeC-CCCCeecCeEEEEeeC
Q 029885 26 PFGQLKVTVVQGKRLVIR-----------------D--FKSSDPYVVLKLGNQM-AKTKVINS-CLNPVWNEEHSLSLTE 84 (186)
Q Consensus 26 ~~~~L~v~i~~a~~L~~~-----------------~--~~~~dpy~~v~~~~~~-~~T~~~~~-~~~P~w~e~~~f~v~~ 84 (186)
..|.|.++|.+|++|++. . .+.+|||+.+.+++.+ .+|+++.+ ..||.|+|+|.+.+..
T Consensus 6 lhg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e~f~i~~ah 85 (808)
T PLN02270 6 LHGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARVGRTRKIENEPKNPRWYESFHIYCAH 85 (808)
T ss_pred eecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEEEEEeecCCCCCCCccccceEEeecc
Confidence 358999999999999863 1 2467999999998765 79999988 4699999999999998
Q ss_pred CCceEEEEEEEcCCCCCCCeeEEEEEecccccccceeeeEEEecCC
Q 029885 85 PVGVLSLEVFDKDRFKADDKMGKAYLNLQPIISAARLRHLVHVSSG 130 (186)
Q Consensus 85 ~~~~l~v~v~d~~~~~~d~~lG~~~v~l~~l~~~~~~~~~~~l~~~ 130 (186)
....+.|+|.|.+.+ ...+||.+.++++++..+...+.|+++-..
T Consensus 86 ~~~~v~f~vkd~~~~-g~~~ig~~~~p~~~~~~g~~i~~~~~~~~~ 130 (808)
T PLN02270 86 MASNIIFTVKDDNPI-GATLIGRAYIPVEEILDGEEVDRWVEILDN 130 (808)
T ss_pred CcceEEEEEecCCcc-CceEEEEEEEEHHHhcCCCccccEEeccCC
Confidence 778999999999998 456999999999999999888888777544
No 106
>PLN02952 phosphoinositide phospholipase C
Probab=99.38 E-value=1.8e-11 Score=103.98 Aligned_cols=94 Identities=32% Similarity=0.408 Sum_probs=79.2
Q ss_pred ceEEEEEEEEeEcCCCCC-------CCCCCcEEEEEEC-----CeEEEeeeeeCCCCCeecCeEEEEeeCCCc-eEEEEE
Q 029885 27 FGQLKVTVVQGKRLVIRD-------FKSSDPYVVLKLG-----NQMAKTKVINSCLNPVWNEEHSLSLTEPVG-VLSLEV 93 (186)
Q Consensus 27 ~~~L~v~i~~a~~L~~~~-------~~~~dpy~~v~~~-----~~~~~T~~~~~~~~P~w~e~~~f~v~~~~~-~l~v~v 93 (186)
...|.|+|++|.+++... ....|||+++.+- ..+.+|+++.++.||.|||+|.|.+..++. .+.|+|
T Consensus 469 ~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PELAllrf~V 548 (599)
T PLN02952 469 KKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPELALLRIEV 548 (599)
T ss_pred cceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCccEEEEEE
Confidence 468999999998875321 2345999999983 356899999999999999999999998765 788999
Q ss_pred EEcCCCCCCCeeEEEEEecccccccce
Q 029885 94 FDKDRFKADDKMGKAYLNLQPIISAAR 120 (186)
Q Consensus 94 ~d~~~~~~d~~lG~~~v~l~~l~~~~~ 120 (186)
||+|..+.++|+|+..+++..+..+.+
T Consensus 549 ~D~D~~~~ddfiGq~~lPv~~Lr~GyR 575 (599)
T PLN02952 549 REYDMSEKDDFGGQTCLPVSELRPGIR 575 (599)
T ss_pred EecCCCCCCCeEEEEEcchhHhcCCce
Confidence 999998889999999999998888765
No 107
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.36 E-value=3.8e-12 Score=105.13 Aligned_cols=90 Identities=32% Similarity=0.479 Sum_probs=79.0
Q ss_pred CcceEEEEEEEEeEcCCCCC-CCCCCcEEEEEEC--C---eEEEeeeeeCCCCCeecCeEEEEeeCCC--c-eEEEEEEE
Q 029885 25 QPFGQLKVTVVQGKRLVIRD-FKSSDPYVVLKLG--N---QMAKTKVINSCLNPVWNEEHSLSLTEPV--G-VLSLEVFD 95 (186)
Q Consensus 25 ~~~~~L~v~i~~a~~L~~~~-~~~~dpy~~v~~~--~---~~~~T~~~~~~~~P~w~e~~~f~v~~~~--~-~l~v~v~d 95 (186)
+..+.|+|.|++|++|..++ .+.+||||++.+- . .+++|.+.+++.||.|||+|.|.+.... . .+.|+|||
T Consensus 295 p~~g~ltv~v~kar~L~~~~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~~~npv~nesf~F~vp~~~l~~~~l~l~V~d 374 (421)
T KOG1028|consen 295 PTAGRLTVVVIKARNLKSMDVGGLSDPYVKVTLLDGDKRLSKKKTSVKKKTLNPVFNETFVFDVPPEQLAEVSLELTVWD 374 (421)
T ss_pred cCCCeEEEEEEEecCCCcccCCCCCCccEEEEEecCCceeeeeeeecccCCCCCcccccEEEeCCHHHhheeEEEEEEEE
Confidence 56799999999999999999 8899999999982 2 3589999999999999999999888542 2 78999999
Q ss_pred cCCCCCCCeeEEEEEeccc
Q 029885 96 KDRFKADDKMGKAYLNLQP 114 (186)
Q Consensus 96 ~~~~~~d~~lG~~~v~l~~ 114 (186)
++.++++++||.+.+....
T Consensus 375 ~d~~~~~~~iG~~~lG~~~ 393 (421)
T KOG1028|consen 375 HDTLGSNDLIGRCILGSDS 393 (421)
T ss_pred cccccccceeeEEEecCCC
Confidence 9999999999998877665
No 108
>PLN02230 phosphoinositide phospholipase C 4
Probab=99.34 E-value=2.3e-11 Score=103.23 Aligned_cols=96 Identities=28% Similarity=0.424 Sum_probs=80.7
Q ss_pred ceEEEEEEEEeEcCCCC------C-CCCCCcEEEEEEC-----CeEEEeeeeeCCCCCeecCeEEEEeeCCCc-eEEEEE
Q 029885 27 FGQLKVTVVQGKRLVIR------D-FKSSDPYVVLKLG-----NQMAKTKVINSCLNPVWNEEHSLSLTEPVG-VLSLEV 93 (186)
Q Consensus 27 ~~~L~v~i~~a~~L~~~------~-~~~~dpy~~v~~~-----~~~~~T~~~~~~~~P~w~e~~~f~v~~~~~-~l~v~v 93 (186)
...|.|+|+.+.+++.. + ....|||++|.+- ..+.+|++..++.||.|||+|.|.+..++. .|.|+|
T Consensus 468 ~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPELAllRf~V 547 (598)
T PLN02230 468 KKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPELALLRVEV 547 (598)
T ss_pred CcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCceeEEEEEE
Confidence 46899999999986521 1 3357999999982 345788988889999999999999998876 889999
Q ss_pred EEcCCCCCCCeeEEEEEecccccccceee
Q 029885 94 FDKDRFKADDKMGKAYLNLQPIISAARLR 122 (186)
Q Consensus 94 ~d~~~~~~d~~lG~~~v~l~~l~~~~~~~ 122 (186)
+|++..++++|+|+..+++..+..+.++.
T Consensus 548 ~d~d~~~~ddfiGQ~~lPv~~Lr~GyR~V 576 (598)
T PLN02230 548 HEHDINEKDDFGGQTCLPVSEIRQGIHAV 576 (598)
T ss_pred EECCCCCCCCEEEEEEcchHHhhCccceE
Confidence 99999889999999999999998887653
No 109
>PLN02222 phosphoinositide phospholipase C 2
Probab=99.32 E-value=5.6e-11 Score=100.70 Aligned_cols=96 Identities=27% Similarity=0.379 Sum_probs=80.2
Q ss_pred ceEEEEEEEEeEcCCC----CC---CCCCCcEEEEEEC-----CeEEEeeeeeCCCCCeecCeEEEEeeCCCc-eEEEEE
Q 029885 27 FGQLKVTVVQGKRLVI----RD---FKSSDPYVVLKLG-----NQMAKTKVINSCLNPVWNEEHSLSLTEPVG-VLSLEV 93 (186)
Q Consensus 27 ~~~L~v~i~~a~~L~~----~~---~~~~dpy~~v~~~-----~~~~~T~~~~~~~~P~w~e~~~f~v~~~~~-~l~v~v 93 (186)
...|.|+|+.+.+++. .. ....|||++|.+. ..+.+|+++.++.+|.|+|+|.|.+..++. .|.|.|
T Consensus 451 ~~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeLAllRf~V 530 (581)
T PLN02222 451 KTTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPELALLRLEV 530 (581)
T ss_pred cceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCceeEEEEEE
Confidence 4679999999987531 11 3457999999983 356899999998999999999999998876 789999
Q ss_pred EEcCCCCCCCeeEEEEEecccccccceee
Q 029885 94 FDKDRFKADDKMGKAYLNLQPIISAARLR 122 (186)
Q Consensus 94 ~d~~~~~~d~~lG~~~v~l~~l~~~~~~~ 122 (186)
||+|..+.++|+|+..+++..+..+.++.
T Consensus 531 ~d~D~~~~ddfigq~~lPv~~Lr~GyR~V 559 (581)
T PLN02222 531 HEYDMSEKDDFGGQTCLPVWELSQGIRAF 559 (581)
T ss_pred EECCCCCCCcEEEEEEcchhhhhCccceE
Confidence 99998888999999999999998887653
No 110
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=99.32 E-value=6e-12 Score=111.21 Aligned_cols=106 Identities=31% Similarity=0.470 Sum_probs=94.0
Q ss_pred CcceEEEEEEEEeEcCCCCC-CCCCCcEEEEEECCe-EEEeeeeeCCCCCeecCeEEEEeeCCCc-eEEEEEEEcCCCCC
Q 029885 25 QPFGQLKVTVVQGKRLVIRD-FKSSDPYVVLKLGNQ-MAKTKVINSCLNPVWNEEHSLSLTEPVG-VLSLEVFDKDRFKA 101 (186)
Q Consensus 25 ~~~~~L~v~i~~a~~L~~~~-~~~~dpy~~v~~~~~-~~~T~~~~~~~~P~w~e~~~f~v~~~~~-~l~v~v~d~~~~~~ 101 (186)
...|.|+|.+..|.||+..+ ++.+||||++.+.++ -++|+++++++||.|||++.+++..... .+.+.|+|++...+
T Consensus 1037 ~nsG~l~I~~~~~~nl~~~d~ng~sDpfv~~~ln~k~vyktkv~KktlNPvwNEe~~i~v~~r~~D~~~i~v~Dwd~~~k 1116 (1227)
T COG5038 1037 ENSGYLTIMLRSGENLPSSDENGYSDPFVKLFLNEKSVYKTKVVKKTLNPVWNEEFTIEVLNRVKDVLTINVNDWDSGEK 1116 (1227)
T ss_pred cccCcEEEEEeccCCCcccccCCCCCceEEEEecceecccccchhccCCCCccccceEeeeccccceEEEEEeecccCCC
Confidence 34589999999999999999 899999999999776 5999999999999999999999996544 89999999999999
Q ss_pred CCeeEEEEEecccccccceeeeEEEecCC
Q 029885 102 DDKMGKAYLNLQPIISAARLRHLVHVSSG 130 (186)
Q Consensus 102 d~~lG~~~v~l~~l~~~~~~~~~~~l~~~ 130 (186)
++.||.+.++|..+..+........|++.
T Consensus 1117 nd~lg~~~idL~~l~~~~~~n~~i~ldgk 1145 (1227)
T COG5038 1117 NDLLGTAEIDLSKLEPGGTTNSNIPLDGK 1145 (1227)
T ss_pred ccccccccccHhhcCcCCccceeeeccCc
Confidence 99999999999999888877666666644
No 111
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.26 E-value=3.9e-11 Score=79.50 Aligned_cols=87 Identities=24% Similarity=0.337 Sum_probs=73.2
Q ss_pred EEEEEEEeEcCCCCC----CCCCCcEEEEEECCe-EEEeeeeeCCCCCeecCeEEEEeeCCCceEEEEEEEcCCCCCCCe
Q 029885 30 LKVTVVQGKRLVIRD----FKSSDPYVVLKLGNQ-MAKTKVINSCLNPVWNEEHSLSLTEPVGVLSLEVFDKDRFKADDK 104 (186)
Q Consensus 30 L~v~i~~a~~L~~~~----~~~~dpy~~v~~~~~-~~~T~~~~~~~~P~w~e~~~f~v~~~~~~l~v~v~d~~~~~~d~~ 104 (186)
|.|+|..++++.... .+.++||+.+++++. +.+|++ +.||.|||+|.|.+. ....+.+.|||+..- ..-.
T Consensus 1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved~~kaRTr~---srnd~WnE~F~i~Vd-k~nEiel~VyDk~~~-~~~P 75 (109)
T cd08689 1 LTITITSARDVDHIASPRFSKRPETYVSIKVEDVERARTKP---SRNDRWNEDFEIPVE-KNNEEEVIVYDKGGD-QPVP 75 (109)
T ss_pred CEEEEEEEecCccccchhhccCCCcEEEEEECCEEEEeccC---CCCCcccceEEEEec-CCcEEEEEEEeCCCC-eecc
Confidence 578999999998776 567899999999876 788876 589999999999995 457999999998654 5568
Q ss_pred eEEEEEeccccccccee
Q 029885 105 MGKAYLNLQPIISAARL 121 (186)
Q Consensus 105 lG~~~v~l~~l~~~~~~ 121 (186)
||...+.++++.+.-+.
T Consensus 76 i~llW~~~sdi~Ee~Rr 92 (109)
T cd08689 76 VGLLWLRLSDIAEEIRK 92 (109)
T ss_pred eeeehhhHHHHHHHHHH
Confidence 99999999999876543
No 112
>PLN02228 Phosphoinositide phospholipase C
Probab=99.24 E-value=3.1e-10 Score=96.04 Aligned_cols=96 Identities=24% Similarity=0.328 Sum_probs=79.7
Q ss_pred ceEEEEEEEEeEcCCC---CC----CCCCCcEEEEEEC-----CeEEEeeeeeCCCCCee-cCeEEEEeeCCCc-eEEEE
Q 029885 27 FGQLKVTVVQGKRLVI---RD----FKSSDPYVVLKLG-----NQMAKTKVINSCLNPVW-NEEHSLSLTEPVG-VLSLE 92 (186)
Q Consensus 27 ~~~L~v~i~~a~~L~~---~~----~~~~dpy~~v~~~-----~~~~~T~~~~~~~~P~w-~e~~~f~v~~~~~-~l~v~ 92 (186)
...|.|+|++|.+|+. .. ....||||++.+. ..+++|+++.++.+|.| +|+|.|.+..++. .|.|.
T Consensus 430 ~~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pELA~lRf~ 509 (567)
T PLN02228 430 KTTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPELALLWFK 509 (567)
T ss_pred CceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCceeEEEEE
Confidence 3579999999998732 11 2347999999982 34579999988899999 9999999998866 78999
Q ss_pred EEEcCCCCCCCeeEEEEEecccccccceee
Q 029885 93 VFDKDRFKADDKMGKAYLNLQPIISAARLR 122 (186)
Q Consensus 93 v~d~~~~~~d~~lG~~~v~l~~l~~~~~~~ 122 (186)
|+|++..+.++|+|+..++++.+..+.++.
T Consensus 510 V~D~d~~~~d~figq~~lPv~~Lr~GYR~V 539 (567)
T PLN02228 510 VQDYDNDTQNDFAGQTCLPLPELKSGVRAV 539 (567)
T ss_pred EEeCCCCCCCCEEEEEEcchhHhhCCeeEE
Confidence 999998888999999999999998887654
No 113
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=99.15 E-value=3.5e-10 Score=97.09 Aligned_cols=94 Identities=24% Similarity=0.381 Sum_probs=79.4
Q ss_pred ceEEEEEEEEeEcCCCCCCCCCCcEEEEEEC-----C-eEEEeeeeeCCCCCeec-CeEEEEeeCCCc-eEEEEEEEcCC
Q 029885 27 FGQLKVTVVQGKRLVIRDFKSSDPYVVLKLG-----N-QMAKTKVINSCLNPVWN-EEHSLSLTEPVG-VLSLEVFDKDR 98 (186)
Q Consensus 27 ~~~L~v~i~~a~~L~~~~~~~~dpy~~v~~~-----~-~~~~T~~~~~~~~P~w~-e~~~f~v~~~~~-~l~v~v~d~~~ 98 (186)
...|.|.|+.|++|+..+.+...||+.+.+- . ..++|.++.+++||+|| |.|.|.+..++- .|.+.|++.|.
T Consensus 1064 p~~lsv~vigaRHL~k~gr~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V~eeDm 1143 (1267)
T KOG1264|consen 1064 PMTLSVKVLGARHLPKLGRSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRFVVYEEDM 1143 (1267)
T ss_pred ceEEEEEEeeccccccCCCCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCceEEEEEEEecccc
Confidence 3689999999999996656666799999982 2 33566677789999999 999999999976 88999999999
Q ss_pred CCCCCeeEEEEEecccccccce
Q 029885 99 FKADDKMGKAYLNLQPIISAAR 120 (186)
Q Consensus 99 ~~~d~~lG~~~v~l~~l~~~~~ 120 (186)
++...|||++..|+..+..+-+
T Consensus 1144 fs~~~FiaqA~yPv~~ik~GfR 1165 (1267)
T KOG1264|consen 1144 FSDPNFLAQATYPVKAIKSGFR 1165 (1267)
T ss_pred cCCcceeeeeecchhhhhccce
Confidence 9888899999999998876644
No 114
>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=99.11 E-value=2.1e-10 Score=95.59 Aligned_cols=92 Identities=27% Similarity=0.521 Sum_probs=83.0
Q ss_pred ceEEEEEEEEeEcCCCCC--CCCCCcEEEEEECCeEEEeeeeeCCCCCeec-CeEEEEeeCCC---ceEEEEEEEcCCCC
Q 029885 27 FGQLKVTVVQGKRLVIRD--FKSSDPYVVLKLGNQMAKTKVINSCLNPVWN-EEHSLSLTEPV---GVLSLEVFDKDRFK 100 (186)
Q Consensus 27 ~~~L~v~i~~a~~L~~~~--~~~~dpy~~v~~~~~~~~T~~~~~~~~P~w~-e~~~f~v~~~~---~~l~v~v~d~~~~~ 100 (186)
.|.|.|+|..|++||.++ ....|.|+.+++++..++|.+..+++||.|| +.|.|++.+.+ +.|.+.+.|+|..+
T Consensus 2 pgkl~vki~a~r~lpvmdkasd~tdafveik~~n~t~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dtys 81 (1169)
T KOG1031|consen 2 PGKLGVKIKAARHLPVMDKASDLTDAFVEIKFANTTFKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDTYS 81 (1169)
T ss_pred CCcceeEEEeccCCcccccccccchheeEEEecccceehhhhhhhcCCcccccceEEecChhhhccCCeeEEEecccccc
Confidence 378999999999999999 6678999999999999999999999999998 67899988753 38999999999999
Q ss_pred CCCeeEEEEEeccccccc
Q 029885 101 ADDKMGKAYLNLQPIISA 118 (186)
Q Consensus 101 ~d~~lG~~~v~l~~l~~~ 118 (186)
.++-||.+.++++.+.-.
T Consensus 82 andaigkv~i~idpl~~e 99 (1169)
T KOG1031|consen 82 ANDAIGKVNIDIDPLCLE 99 (1169)
T ss_pred cccccceeeeccChHHHH
Confidence 999999999999987543
No 115
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=99.00 E-value=1.2e-10 Score=98.78 Aligned_cols=96 Identities=31% Similarity=0.486 Sum_probs=83.0
Q ss_pred ccCCcceEEEEEEEEeEcCCCCC-CCCCCcEEEEEECCe-------EEEeeeeeCCCCCeecCeEEEEeeCCC----c-e
Q 029885 22 IMRQPFGQLKVTVVQGKRLVIRD-FKSSDPYVVLKLGNQ-------MAKTKVINSCLNPVWNEEHSLSLTEPV----G-V 88 (186)
Q Consensus 22 ~~~~~~~~L~v~i~~a~~L~~~~-~~~~dpy~~v~~~~~-------~~~T~~~~~~~~P~w~e~~~f~v~~~~----~-~ 88 (186)
........|.|.|+-|+++.+.+ +|.+|||+++.+... .++|+|+.+++||+|+|.|.|.++... . .
T Consensus 941 ~y~~n~q~L~veVlhA~diipLD~NGlSDPFVviEl~P~~~fp~v~~q~T~V~~rtLnPVfDE~FeFsVp~e~c~te~Am 1020 (1103)
T KOG1328|consen 941 YYNGNAQTLVVEVLHAKDIIPLDSNGLSDPFVVIELIPKFRFPAVPVQKTKVVSRTLNPVFDETFEFSVPPEPCSTETAM 1020 (1103)
T ss_pred EeeccccchhhhhhccccccccCCCCCCCCeEEEEeccccccccchhhhhhhhhccccchhhhheeeecCccccccccce
Confidence 33444567889999999999999 999999999999653 479999999999999999999998642 1 7
Q ss_pred EEEEEEEcCCCCCCCeeEEEEEecccccc
Q 029885 89 LSLEVFDKDRFKADDKMGKAYLNLQPIIS 117 (186)
Q Consensus 89 l~v~v~d~~~~~~d~~lG~~~v~l~~l~~ 117 (186)
+.|+|+|+|-...+||-|++.+.|.++..
T Consensus 1021 ~~FTVMDHD~L~sNDFaGEA~L~Lg~vpG 1049 (1103)
T KOG1328|consen 1021 LHFTVMDHDYLRSNDFAGEAFLELGDVPG 1049 (1103)
T ss_pred EEEEeeccceecccccchHHHHhhCCCCC
Confidence 89999999999999999999999998753
No 116
>PLN02352 phospholipase D epsilon
Probab=98.76 E-value=1.3e-07 Score=82.26 Aligned_cols=97 Identities=19% Similarity=0.358 Sum_probs=75.4
Q ss_pred cceEEEEEEEEeEcCCCC----C--CCCCCcEEEEEECCeE-EEeeeeeCCCCCeecCeEEEEeeCCC-ceEEEEEEEcC
Q 029885 26 PFGQLKVTVVQGKRLVIR----D--FKSSDPYVVLKLGNQM-AKTKVINSCLNPVWNEEHSLSLTEPV-GVLSLEVFDKD 97 (186)
Q Consensus 26 ~~~~L~v~i~~a~~L~~~----~--~~~~dpy~~v~~~~~~-~~T~~~~~~~~P~w~e~~~f~v~~~~-~~l~v~v~d~~ 97 (186)
..|.|.++|.+|+-+... . ....+||+.+.+++.+ .+| .+..||.|+|+|.+.+.... ..+.|+|.|
T Consensus 8 lhg~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~~~v~rt---~~~~~p~w~e~f~i~~ah~~~~~~~f~vk~-- 82 (758)
T PLN02352 8 FHGTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGNKKVAKT---SHEYDRVWNQTFQILCAHPLDSTITITLKT-- 82 (758)
T ss_pred cccceEEEEEEeeehhhcccccccccCCCCceEEEEeCCcEEecC---CCCCCCccccceeEEeeeecCCcEEEEEec--
Confidence 458999999999843221 1 1223999999997755 677 55669999999999998776 589999977
Q ss_pred CCCCCCeeEEEEEecccccccce-eeeEEEecCC
Q 029885 98 RFKADDKMGKAYLNLQPIISAAR-LRHLVHVSSG 130 (186)
Q Consensus 98 ~~~~d~~lG~~~v~l~~l~~~~~-~~~~~~l~~~ 130 (186)
...+||.+.+++.++..+.. .+.|+++-..
T Consensus 83 ---~~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~ 113 (758)
T PLN02352 83 ---KCSILGRFHIQAHQIVTEASFINGFFPLIME 113 (758)
T ss_pred ---CCeEEEEEEEEHHHhhCCCcccceEEEcccC
Confidence 36799999999999988865 7777777544
No 117
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=98.70 E-value=3.2e-09 Score=90.43 Aligned_cols=123 Identities=24% Similarity=0.445 Sum_probs=92.0
Q ss_pred CcceEEEEEEEEeEcCCCCC-CCCCCcEEEEEECC-------------e------------------EEEeeeeeCCCCC
Q 029885 25 QPFGQLKVTVVQGKRLVIRD-FKSSDPYVVLKLGN-------------Q------------------MAKTKVINSCLNP 72 (186)
Q Consensus 25 ~~~~~L~v~i~~a~~L~~~~-~~~~dpy~~v~~~~-------------~------------------~~~T~~~~~~~~P 72 (186)
++...+.|.+.+|.+|..++ +|.+|||+...+-. + .+-|++.+.|+||
T Consensus 111 ~P~~~l~is~~~ak~l~akd~ngfSdP~~m~g~~p~~~~~~~pra~~eqrdgl~~~~~~~GpiPAKlIkatsvk~~TLnP 190 (1103)
T KOG1328|consen 111 PPSVLLNISLLEAKDLIAKDVNGFSDPFAMMGVVPGTRKENSPRALHEQRDGLMHRFQDTGPIPAKLIKATSVKKKTLNP 190 (1103)
T ss_pred CCcHHHHHHHHHhcCccccCCCCCCChhhhhccccccccccChhhhhhhhhhhhhccccCCCCcHHHhhhcccccccCCc
Confidence 44566788889999999999 99999999987610 0 1357888899999
Q ss_pred eecCeEEEEeeCCCc-eEEEEEEEcCCC---------------------------------C---CCCeeEEEEEecccc
Q 029885 73 VWNEEHSLSLTEPVG-VLSLEVFDKDRF---------------------------------K---ADDKMGKAYLNLQPI 115 (186)
Q Consensus 73 ~w~e~~~f~v~~~~~-~l~v~v~d~~~~---------------------------------~---~d~~lG~~~v~l~~l 115 (186)
.|+|.|.|.+.+... .+.+-|||+|.- + .|||+|.+.+++.++
T Consensus 191 kW~EkF~F~IeDv~tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tDDFLGciNipl~Ei 270 (1103)
T KOG1328|consen 191 KWSEKFQFTIEDVQTDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTDDFLGCINIPLAEI 270 (1103)
T ss_pred chhhheeeehhccccceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCccccccccccccchhcC
Confidence 999999999998765 899999998751 1 278999999999988
Q ss_pred cccceeeeEEEecCCCeeeEEEeeCCCCeecccceEEEECCEEEEEEeEEe
Q 029885 116 ISAARLRHLVHVSSGETPLRKIIPDSENCLARESSIICINGEVVQNVWLRL 166 (186)
Q Consensus 116 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 166 (186)
...+ .+.|+.|+.. +..|-.+|.+...+|+--
T Consensus 271 P~~G-ld~WFkLepR------------------S~~S~VqG~~~LklwLsT 302 (1103)
T KOG1328|consen 271 PPDG-LDQWFKLEPR------------------SDKSKVQGQVKLKLWLST 302 (1103)
T ss_pred Ccch-HHHHhccCcc------------------cccccccceEEEEEEEee
Confidence 6543 3445555533 334445566666666655
No 118
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=98.68 E-value=1.6e-08 Score=89.90 Aligned_cols=103 Identities=21% Similarity=0.215 Sum_probs=87.1
Q ss_pred cceEEEEEEEEeEcCCCCC-CCCCCcEEEEEECC-----eEEEeeeeeCCCCCeecCeEEEEeeC-C---CceEEEEEEE
Q 029885 26 PFGQLKVTVVQGKRLVIRD-FKSSDPYVVLKLGN-----QMAKTKVINSCLNPVWNEEHSLSLTE-P---VGVLSLEVFD 95 (186)
Q Consensus 26 ~~~~L~v~i~~a~~L~~~~-~~~~dpy~~v~~~~-----~~~~T~~~~~~~~P~w~e~~~f~v~~-~---~~~l~v~v~d 95 (186)
..++|.|-|.-|++|+... +..+||||+.++.. .+.+|++++++.+|.|||.+...... + .+.|.++||.
T Consensus 1522 ~~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~~~l~qReLQ~sVls 1601 (1639)
T KOG0905|consen 1522 NNGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFPKEILQQRELQVSVLS 1601 (1639)
T ss_pred cCceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecCCchhhhhhheeeeeeec
Confidence 3588999999999997666 77899999999942 35899999999999999999877332 1 2489999999
Q ss_pred cCCCCCCCeeEEEEEecccccccceeeeEEEec
Q 029885 96 KDRFKADDKMGKAYLNLQPIISAARLRHLVHVS 128 (186)
Q Consensus 96 ~~~~~~d~~lG~~~v~l~~l~~~~~~~~~~~l~ 128 (186)
.+....+.|+|.+.++|.++...+....||.|.
T Consensus 1602 ~~~~~en~~lg~v~i~L~~~~l~kE~~~Wy~lg 1634 (1639)
T KOG0905|consen 1602 NGGLLENVFLGGVNIPLLKVDLLKESVGWYNLG 1634 (1639)
T ss_pred ccceeeeeeeeeeecchhhcchhhhhcceeecc
Confidence 999888899999999999998888777887775
No 119
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=98.66 E-value=4.1e-08 Score=83.48 Aligned_cols=96 Identities=14% Similarity=0.162 Sum_probs=75.8
Q ss_pred EEeEcCCCCCCCCCCcEEEEEECCeE----EEeeeeeCCCCCeecCeEEEEeeCC---------------Cc-eEEEEEE
Q 029885 35 VQGKRLVIRDFKSSDPYVVLKLGNQM----AKTKVINSCLNPVWNEEHSLSLTEP---------------VG-VLSLEVF 94 (186)
Q Consensus 35 ~~a~~L~~~~~~~~dpy~~v~~~~~~----~~T~~~~~~~~P~w~e~~~f~v~~~---------------~~-~l~v~v~ 94 (186)
..++++.+..++.+|||+.+...... .+|++.+.+.+|.|+|.|.|.+... .. .+.+.+|
T Consensus 138 L~~r~~~P~~~~~~dp~~~v~~~g~~~~~~~~T~~~kkt~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~e~~~l~irv~lW 217 (800)
T KOG2059|consen 138 LKTRQGLPIINGQCDPFARVTLCGPSKLKEKKTKVKKKTTNPQFDEVFYFEVTREESYSKKSLFMPEEEDDMLEIRVDLW 217 (800)
T ss_pred hhhcccCceeCCCCCcceEEeecccchhhccccceeeeccCcchhhheeeeeccccccccchhcCcccCCceeeEEEeec
Confidence 34455545556779999999985433 5999999999999999999998755 22 7889999
Q ss_pred E-cCCCCCCCeeEEEEEecccccccceeeeEEEecCC
Q 029885 95 D-KDRFKADDKMGKAYLNLQPIISAARLRHLVHVSSG 130 (186)
Q Consensus 95 d-~~~~~~d~~lG~~~v~l~~l~~~~~~~~~~~l~~~ 130 (186)
+ .+....++|+|++.+++..+......+.||.|...
T Consensus 218 ~~~~~~~~~~FlGevrv~v~~~~~~s~p~~W~~Lqp~ 254 (800)
T KOG2059|consen 218 NDLNLVINDVFLGEVRVPVDVLRQKSSPAAWYYLQPR 254 (800)
T ss_pred cchhhhhhhhhceeEEeehhhhhhccCccceEEEecC
Confidence 8 55566689999999999999877777888877644
No 120
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=98.64 E-value=2.1e-08 Score=87.93 Aligned_cols=90 Identities=31% Similarity=0.438 Sum_probs=80.3
Q ss_pred CcceEEEEEEEEeEcCCCCC-CCCCCcEEEEEECCeE--EEeeeeeCCCCCeecCeEEEEeeCCCc-eEEEEEEEcCCCC
Q 029885 25 QPFGQLKVTVVQGKRLVIRD-FKSSDPYVVLKLGNQM--AKTKVINSCLNPVWNEEHSLSLTEPVG-VLSLEVFDKDRFK 100 (186)
Q Consensus 25 ~~~~~L~v~i~~a~~L~~~~-~~~~dpy~~v~~~~~~--~~T~~~~~~~~P~w~e~~~f~v~~~~~-~l~v~v~d~~~~~ 100 (186)
+....++|++++|.+|.+.| +|..|||+.+.++++. -++..+.+++||+|.+.|.+...-+.. .++++|||+|..+
T Consensus 610 pi~~LvrVyvv~A~~L~p~D~ng~adpYv~l~lGk~~~~d~~~yip~tlnPVfgkmfel~~~lp~ek~l~v~vyd~D~~~ 689 (1105)
T KOG1326|consen 610 PIKCLVRVYVVEAFSLQPSDGNGDADPYVKLLLGKKRTLDRAHYIPNTLNPVFGKMFELECLLPFEKDLIVEVYDHDLEA 689 (1105)
T ss_pred cceeeEEEEEEEeeeccccCCCCCcCceeeeeeccchhhhhhhcCcCCCCcHHHHHHHhhcccchhhcceeEEEEeeccc
Confidence 34467789999999999999 9999999999998876 567788899999999999988887655 8999999999999
Q ss_pred CCCeeEEEEEeccc
Q 029885 101 ADDKMGKAYLNLQP 114 (186)
Q Consensus 101 ~d~~lG~~~v~l~~ 114 (186)
.|+.||+..++|++
T Consensus 690 ~d~~iget~iDLEn 703 (1105)
T KOG1326|consen 690 QDEKIGETTIDLEN 703 (1105)
T ss_pred ccchhhceehhhhh
Confidence 99999999999985
No 121
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.52 E-value=5.8e-07 Score=76.30 Aligned_cols=105 Identities=22% Similarity=0.230 Sum_probs=88.1
Q ss_pred cceEEEEEEEEeEcCCCCCCCCCCcEEEEEE-C------CeEEEeeeeeCCCCCeecCeEEEEeeCCCc----eEEEEEE
Q 029885 26 PFGQLKVTVVQGKRLVIRDFKSSDPYVVLKL-G------NQMAKTKVINSCLNPVWNEEHSLSLTEPVG----VLSLEVF 94 (186)
Q Consensus 26 ~~~~L~v~i~~a~~L~~~~~~~~dpy~~v~~-~------~~~~~T~~~~~~~~P~w~e~~~f~v~~~~~----~l~v~v~ 94 (186)
....++|+|+.|.+|.-...|...||+.+.+ + ++++.|+...++-.|.|||+|.|.+.+... .|.+.|-
T Consensus 1123 gehkvtvkvvaandlkwqtsgmFrPFVEV~ivGP~lsDKKRK~~TKtKsnnWaPKyNEtF~f~Lg~e~~Pe~YEL~~~VK 1202 (1283)
T KOG1011|consen 1123 GEHKVTVKVVAANDLKWQTSGMFRPFVEVHIVGPHLSDKKRKFSTKTKSNNWAPKYNETFHFFLGNEGGPEHYELQFCVK 1202 (1283)
T ss_pred CcceEEEEEEecccccchhccccccceEEEEecCcccchhhhccccccCCCcCcccCceeEEEeccCCCCceEEEEEeeh
Confidence 3457889999999998777888899999998 2 235788888899999999999999876432 8889998
Q ss_pred EcCCCCCCCeeEEEEEecccccccceeeeEEEecCC
Q 029885 95 DKDRFKADDKMGKAYLNLQPIISAARLRHLVHVSSG 130 (186)
Q Consensus 95 d~~~~~~d~~lG~~~v~l~~l~~~~~~~~~~~l~~~ 130 (186)
|+.-...|..+|.+.++|.++.+.+....|++|...
T Consensus 1203 DYCFAReDRvvGl~VlqL~~va~kGS~a~W~pLgrr 1238 (1283)
T KOG1011|consen 1203 DYCFAREDRVVGLAVLQLRSVADKGSCACWVPLGRR 1238 (1283)
T ss_pred hheeecccceeeeeeeehhhHhhcCceeEeeecccc
Confidence 887666677999999999999999999999988644
No 122
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.37 E-value=5.8e-07 Score=70.59 Aligned_cols=87 Identities=30% Similarity=0.322 Sum_probs=74.2
Q ss_pred CcceEEEEEEEEeEcCCCCC-CCCCCcEEEEEECC-----eEEEeeeeeCCCCCeecCeEEEEeeCCCc---eEEEEEEE
Q 029885 25 QPFGQLKVTVVQGKRLVIRD-FKSSDPYVVLKLGN-----QMAKTKVINSCLNPVWNEEHSLSLTEPVG---VLSLEVFD 95 (186)
Q Consensus 25 ~~~~~L~v~i~~a~~L~~~~-~~~~dpy~~v~~~~-----~~~~T~~~~~~~~P~w~e~~~f~v~~~~~---~l~v~v~d 95 (186)
.....+.|+++++.+|...+ ++.+|||+..++.. .+++|.+.+++.+|.|+++|.+.+...+. .+.|.|||
T Consensus 230 s~~~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~K~t~~p~fd~~~~~~i~pgdLa~~kv~lsvgd 309 (362)
T KOG1013|consen 230 STTPGLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQKKKTLNPEFDEEFFYDIGPGDLAYKKVALSVGD 309 (362)
T ss_pred cCCCceEEEEEEeeeeeccccCCCCCccceeecCCCcchhhcccCcchhccCCccccccccccCCccchhcceEEEeecc
Confidence 34467899999999999999 99999999999842 35789999999999999999999987653 88999999
Q ss_pred cCCCCCCCeeEEEEEe
Q 029885 96 KDRFKADDKMGKAYLN 111 (186)
Q Consensus 96 ~~~~~~d~~lG~~~v~ 111 (186)
++.-+..+++|-....
T Consensus 310 ~~~G~s~d~~GG~~~g 325 (362)
T KOG1013|consen 310 YDIGKSNDSIGGSMLG 325 (362)
T ss_pred cCCCcCccCCCccccc
Confidence 9988788898886643
No 123
>PLN02964 phosphatidylserine decarboxylase
Probab=98.27 E-value=2.1e-06 Score=74.17 Aligned_cols=94 Identities=22% Similarity=0.356 Sum_probs=77.8
Q ss_pred cccCCcceEEEEEEEEeEcCCCCCCCCCCcE-EEEEECCeEEEeeeeeCCCCCeecCeEEEEeeCCCc-eEEEEEEEcCC
Q 029885 21 CIMRQPFGQLKVTVVQGKRLVIRDFKSSDPY-VVLKLGNQMAKTKVINSCLNPVWNEEHSLSLTEPVG-VLSLEVFDKDR 98 (186)
Q Consensus 21 ~~~~~~~~~L~v~i~~a~~L~~~~~~~~dpy-~~v~~~~~~~~T~~~~~~~~P~w~e~~~f~v~~~~~-~l~v~v~d~~~ 98 (186)
...+...|...+++++|+ ++ ..|+| +.+.++.+.++|...++|.+|+||+...|.+...+. ...+.|||.+.
T Consensus 47 ~~~~~~~~~~~~~~~~~~----~~--~~~~~~~~~~~g~~~f~t~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (644)
T PLN02964 47 VSAEDFSGIALLTLVGAE----MK--FKDKWLACVSFGEQTFRTETSDSTDKPVWNSEKKLLLEKNGPHLARISVFETNR 120 (644)
T ss_pred eecccccCeEEEEeehhh----hc--cCCcEEEEEEecceeeeeccccccCCcccchhhceEeccCCcceEEEEEEecCC
Confidence 445566789999999987 22 35775 456678999999999999999999999999887654 66999999999
Q ss_pred CCCCCeeEEEEEecccccccce
Q 029885 99 FKADDKMGKAYLNLQPIISAAR 120 (186)
Q Consensus 99 ~~~d~~lG~~~v~l~~l~~~~~ 120 (186)
++.++++|.+++++.++...+.
T Consensus 121 ~s~n~lv~~~e~~~t~f~~kqi 142 (644)
T PLN02964 121 LSKNTLVGYCELDLFDFVTQEP 142 (644)
T ss_pred CCHHHhhhheeecHhhccHHHH
Confidence 9999999999999888776654
No 124
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=98.17 E-value=2.4e-06 Score=58.69 Aligned_cols=97 Identities=15% Similarity=0.287 Sum_probs=70.1
Q ss_pred EEEEEEEeEcCCCCC--------------CCCCCcEEEEEE----CCeEEEeeeeeCCCCCeecCeEEEEeeC------C
Q 029885 30 LKVTVVQGKRLVIRD--------------FKSSDPYVVLKL----GNQMAKTKVINSCLNPVWNEEHSLSLTE------P 85 (186)
Q Consensus 30 L~v~i~~a~~L~~~~--------------~~~~dpy~~v~~----~~~~~~T~~~~~~~~P~w~e~~~f~v~~------~ 85 (186)
|.|.|++|.+|+... .-.-|+|+++.+ +++..+|+++.++.-|.|+.+++|..+- .
T Consensus 1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~G 80 (143)
T cd08683 1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSG 80 (143)
T ss_pred CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCC
Confidence 457788888877431 012489999996 3567899999999999999999998661 1
Q ss_pred ----------CceEEEEEEEcCCCC----------CCCeeEEEEEecccccccce-eeeEEE
Q 029885 86 ----------VGVLSLEVFDKDRFK----------ADDKMGKAYLNLQPIISAAR-LRHLVH 126 (186)
Q Consensus 86 ----------~~~l~v~v~d~~~~~----------~d~~lG~~~v~l~~l~~~~~-~~~~~~ 126 (186)
...+.++||+...-+ +|-+||.+.||+.++....+ ...||+
T Consensus 81 e~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~rsGitGW~p 142 (143)
T cd08683 81 EAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKRSGITGWYP 142 (143)
T ss_pred ccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhcccCcccccc
Confidence 127899999965432 34489999999999876543 445543
No 125
>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.16 E-value=1.6e-06 Score=69.15 Aligned_cols=106 Identities=23% Similarity=0.333 Sum_probs=87.9
Q ss_pred CcceEEEEEEEEeEcCCCCC--CCCCCcEEEEEECC-----eEEEeeeeeCCCCCeecCeEEEEeeCCCceEEEEEE-Ec
Q 029885 25 QPFGQLKVTVVQGKRLVIRD--FKSSDPYVVLKLGN-----QMAKTKVINSCLNPVWNEEHSLSLTEPVGVLSLEVF-DK 96 (186)
Q Consensus 25 ~~~~~L~v~i~~a~~L~~~~--~~~~dpy~~v~~~~-----~~~~T~~~~~~~~P~w~e~~~f~v~~~~~~l~v~v~-d~ 96 (186)
...|.+.|.|++|++|..+. ...++||++|++.. .+.+|+...++..|.+-.+..|.-..+...|.+.+| |+
T Consensus 266 d~~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~sp~~k~Lq~tv~gdy 345 (405)
T KOG2060|consen 266 DSKGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQSPPGKYLQGTVWGDY 345 (405)
T ss_pred cccCceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhccCCCccEEEEEEeccc
Confidence 45689999999999998877 44789999999943 347899999999999999999998888789999999 56
Q ss_pred CCCCCCCeeEEEEEecccccccc-eeeeEEEecCC
Q 029885 97 DRFKADDKMGKAYLNLQPIISAA-RLRHLVHVSSG 130 (186)
Q Consensus 97 ~~~~~d~~lG~~~v~l~~l~~~~-~~~~~~~l~~~ 130 (186)
..+.++.|+|.+++-++++.-.. --..||.+...
T Consensus 346 gRmd~k~fmg~aqi~l~eL~ls~~~~igwyKlfgs 380 (405)
T KOG2060|consen 346 GRMDHKSFMGVAQIMLDELNLSSSPVIGWYKLFGS 380 (405)
T ss_pred cccchHHHhhHHHHHhhhhccccccceeeeeccCC
Confidence 77777889999999999987766 45677776544
No 126
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.13 E-value=2.6e-07 Score=72.53 Aligned_cols=95 Identities=28% Similarity=0.358 Sum_probs=77.9
Q ss_pred cceEEEEEEEEeEcCCCCC-CCCCCcEEEEEECC-----eEEEeeeeeCCCCCeecCeEEEEeeCC----CceEEEEEEE
Q 029885 26 PFGQLKVTVVQGKRLVIRD-FKSSDPYVVLKLGN-----QMAKTKVINSCLNPVWNEEHSLSLTEP----VGVLSLEVFD 95 (186)
Q Consensus 26 ~~~~L~v~i~~a~~L~~~~-~~~~dpy~~v~~~~-----~~~~T~~~~~~~~P~w~e~~~f~v~~~----~~~l~v~v~d 95 (186)
....+.++|..|.+|.+++ .+..|||++..+.. .+.+|++..++.||.|+|+.....-.. ...+.+.|.|
T Consensus 91 ~~~~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~kl~slr~~t~~n~lN~~w~etev~~~i~~~~~~~K~~Rk~vcd 170 (362)
T KOG1013|consen 91 ESRMLDTTLDRAKGLKPMDINGLADPYVKLHLLPGAGKLNSLRTKTTRNTLNPEWNETEVYEGITDDDTHLKVLRKVVCD 170 (362)
T ss_pred hhhhcceeechhcccchhhhhhhcchHHhhhcccchhhhhhhhHHhhccCcCcceeccceecccccchhhhhhhheeecc
Confidence 4467899999999999999 99999999999843 347888999999999999877653322 1277889999
Q ss_pred cCCCCCCCeeEEEEEecccccccce
Q 029885 96 KDRFKADDKMGKAYLNLQPIISAAR 120 (186)
Q Consensus 96 ~~~~~~d~~lG~~~v~l~~l~~~~~ 120 (186)
++.+.+++++|+..+++..+...+.
T Consensus 171 n~~~~~~~sqGq~r~~lkKl~p~q~ 195 (362)
T KOG1013|consen 171 NDKKTHNESQGQSRVSLKKLKPLQR 195 (362)
T ss_pred CcccccccCcccchhhhhccChhhc
Confidence 9999899999999999887776554
No 127
>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]
Probab=98.09 E-value=2.8e-06 Score=68.65 Aligned_cols=106 Identities=21% Similarity=0.349 Sum_probs=83.8
Q ss_pred cceEEEEEEEEeEcCCCCC-CCCCCcEEEEEE-----CCeEEEeeeeeCCCCCeecCeEEEEeeCC------------Cc
Q 029885 26 PFGQLKVTVVQGKRLVIRD-FKSSDPYVVLKL-----GNQMAKTKVINSCLNPVWNEEHSLSLTEP------------VG 87 (186)
Q Consensus 26 ~~~~L~v~i~~a~~L~~~~-~~~~dpy~~v~~-----~~~~~~T~~~~~~~~P~w~e~~~f~v~~~------------~~ 87 (186)
....|.+.|+++.+++... ----|.|+.+.+ ..++.+|.+++++.+|.|+|.|.+.+... +.
T Consensus 365 ~d~elel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~ 444 (523)
T KOG3837|consen 365 KDQELELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRL 444 (523)
T ss_pred chhHhHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhc
Confidence 3456778888888776544 223467877776 23567899999999999999999988762 12
Q ss_pred eEEEEEEEcCCC-CCCCeeEEEEEecccccccceeeeEEEecCCC
Q 029885 88 VLSLEVFDKDRF-KADDKMGKAYLNLQPIISAARLRHLVHVSSGE 131 (186)
Q Consensus 88 ~l~v~v~d~~~~-~~d~~lG~~~v~l~~l~~~~~~~~~~~l~~~~ 131 (186)
.++|+||++.-+ ..|.++|.+.+.+..+.....++..++|.+|+
T Consensus 445 g~kfeifhkggf~rSdkl~gt~nikle~Len~cei~e~~~l~DGR 489 (523)
T KOG3837|consen 445 GKKFEIFHKGGFNRSDKLTGTGNIKLEILENMCEICEYLPLKDGR 489 (523)
T ss_pred CeeEEEeeccccccccceeceeeeeehhhhcccchhhceeccccc
Confidence 689999998875 45779999999999999999999999999884
No 128
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=98.02 E-value=6.5e-06 Score=52.78 Aligned_cols=86 Identities=14% Similarity=0.140 Sum_probs=65.0
Q ss_pred EEEEEeEcCCCCC--CCCCCcEEEEEE---CCeEEEeeeeeCCCCCeecCeEEEEeeCCC--c-eEEEEEEEcCCCCCCC
Q 029885 32 VTVVQGKRLVIRD--FKSSDPYVVLKL---GNQMAKTKVINSCLNPVWNEEHSLSLTEPV--G-VLSLEVFDKDRFKADD 103 (186)
Q Consensus 32 v~i~~a~~L~~~~--~~~~dpy~~v~~---~~~~~~T~~~~~~~~P~w~e~~~f~v~~~~--~-~l~v~v~d~~~~~~d~ 103 (186)
++++.++++.-.. ...+..|++--+ ....++|++.+...||.|.|+|.|.+.... . .|.+.|+. ...+.+
T Consensus 3 itv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~--~~~RKe 80 (103)
T cd08684 3 ITVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQT--QTPRKR 80 (103)
T ss_pred EEEEEecccccccccCcCCeeEEEEEEecCCCccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeec--cCCccc
Confidence 6778888887655 334556666544 235689999999999999999999877432 2 88899988 444788
Q ss_pred eeEEEEEecccccccc
Q 029885 104 KMGKAYLNLQPIISAA 119 (186)
Q Consensus 104 ~lG~~~v~l~~l~~~~ 119 (186)
.||.+.+.+.++-++.
T Consensus 81 ~iG~~sL~l~s~geeE 96 (103)
T cd08684 81 TIGECSLSLRTLSTQE 96 (103)
T ss_pred eeeEEEeecccCCHHH
Confidence 9999999999876553
No 129
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=97.93 E-value=2e-06 Score=75.83 Aligned_cols=110 Identities=20% Similarity=0.273 Sum_probs=85.3
Q ss_pred ccccCCcceEEEEEEEEeEcCCCCC-CCCCCcEEEEEECCeEEEeeeeeCCCCCeecCeEEEEee----------CCCce
Q 029885 20 NCIMRQPFGQLKVTVVQGKRLVIRD-FKSSDPYVVLKLGNQMAKTKVINSCLNPVWNEEHSLSLT----------EPVGV 88 (186)
Q Consensus 20 ~~~~~~~~~~L~v~i~~a~~L~~~~-~~~~dpy~~v~~~~~~~~T~~~~~~~~P~w~e~~~f~v~----------~~~~~ 88 (186)
+...+.....++++|.+|+.|...+ .+.+|||+.+...++.+.|.++.++++|.|+++..|.-- .....
T Consensus 198 c~~~e~~~~~lR~yiyQar~L~a~dk~~~sdp~a~v~f~~qs~~T~~v~~tl~ptwdq~~~f~~~ei~ge~~~~~~~ppi 277 (1105)
T KOG1326|consen 198 CYLSEVIHSPLRSYIYQARALGAPDKDDESDPDAAVEFCGQSKETEVVPGTLNPTWDQTIIFDEVEIYGEAHLVLKNPPI 277 (1105)
T ss_pred EecchhhhhhhHHHHHHHHhhcCCCcccCCCchhhhhcccccceeEeecCcCCCCccceeeccceeecCccchhhcCCCe
Confidence 4445556677889999999999988 889999999999999999999999999999999988522 11126
Q ss_pred EEEEEEEcCCCCCCCeeEEEEEecccccccceeeeEEEecCC
Q 029885 89 LSLEVFDKDRFKADDKMGKAYLNLQPIISAARLRHLVHVSSG 130 (186)
Q Consensus 89 l~v~v~d~~~~~~d~~lG~~~v~l~~l~~~~~~~~~~~l~~~ 130 (186)
+.++|||.+..+.++|+|.......-+.. .-...|++...|
T Consensus 278 ~v~e~yd~dr~g~~ef~gr~~~~p~V~~~-~p~lkw~p~~rg 318 (1105)
T KOG1326|consen 278 RVFEVYDLDRSGINEFKGRKKQRPYVMVQ-CPALKWVPTMRG 318 (1105)
T ss_pred EEEEeehhhhhchHHhhcccccceEEEec-CCccceEEeecc
Confidence 78999999999999999998766554443 233344454443
No 130
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=97.75 E-value=6.9e-05 Score=62.98 Aligned_cols=82 Identities=29% Similarity=0.490 Sum_probs=67.1
Q ss_pred EEeEcCCCCC-CCCCCcEEEEEEC--C----eEEEeeeeeCCCCCeecCeEEEEee-----CCCceEEEEEEEcCCCCCC
Q 029885 35 VQGKRLVIRD-FKSSDPYVVLKLG--N----QMAKTKVINSCLNPVWNEEHSLSLT-----EPVGVLSLEVFDKDRFKAD 102 (186)
Q Consensus 35 ~~a~~L~~~~-~~~~dpy~~v~~~--~----~~~~T~~~~~~~~P~w~e~~~f~v~-----~~~~~l~v~v~d~~~~~~d 102 (186)
.+|++|..++ .+.+|||..++-- . ..++|++++++++|.|.+ |.+... ++...+.+.+||++..+++
T Consensus 143 ~~~~~ld~kd~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~~-~~i~~~~l~~~~~~~~~~i~~~d~~~~~~~ 221 (529)
T KOG1327|consen 143 FRAKNLDPKDFFSKSDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWAP-FSISLQSLCSKDGNRPIQIECYDYDSNGKH 221 (529)
T ss_pred eeeeecCcccccccCCcceEEEEecCCCceeeccccceeccCCCCcccc-cccchhhhcccCCCCceEEEEeccCCCCCc
Confidence 4578888888 8999999988762 2 238999999999999997 554433 3345889999999999899
Q ss_pred CeeEEEEEecccccc
Q 029885 103 DKMGKAYLNLQPIIS 117 (186)
Q Consensus 103 ~~lG~~~v~l~~l~~ 117 (186)
+++|.+..++.++..
T Consensus 222 ~~ig~~~tt~~~~~~ 236 (529)
T KOG1327|consen 222 DLIGKFQTTLSELQE 236 (529)
T ss_pred CceeEecccHHHhcc
Confidence 999999999998876
No 131
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=97.27 E-value=0.0091 Score=42.79 Aligned_cols=96 Identities=16% Similarity=0.221 Sum_probs=67.1
Q ss_pred CcceEEEEEEEEeEcCCCCCC---CCCCcEEE--EEECCeEEEeeeeeCCCCCeecCeEEEEeeCCC-------------
Q 029885 25 QPFGQLKVTVVQGKRLVIRDF---KSSDPYVV--LKLGNQMAKTKVINSCLNPVWNEEHSLSLTEPV------------- 86 (186)
Q Consensus 25 ~~~~~L~v~i~~a~~L~~~~~---~~~dpy~~--v~~~~~~~~T~~~~~~~~P~w~e~~~f~v~~~~------------- 86 (186)
+..-.|++.|..++-.-..-. +..+.... +.+.+++++|+.+..+.+|.|+|.|-|++....
T Consensus 6 ~~~~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~QRF~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~ 85 (156)
T PF15627_consen 6 PGRRYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRGQRFRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLSI 85 (156)
T ss_pred CCceEEEEEEeCchhHhhhhhccCCCCceEEEEEEEecCceEecCCcccccCCCCCCcEEEEecccccccccchhHhhcC
Confidence 445678888887653322111 33344333 444899999999999999999999999987542
Q ss_pred -ceEEEEEEEcCCCCCCCeeEEEEEecccccccce
Q 029885 87 -GVLSLEVFDKDRFKADDKMGKAYLNLQPIISAAR 120 (186)
Q Consensus 87 -~~l~v~v~d~~~~~~d~~lG~~~v~l~~l~~~~~ 120 (186)
..+.+.|-.-+..+...++|.-.++...+...+.
T Consensus 86 ~~pihivli~~d~~~~~~Lv~s~~ldWR~vL~s~~ 120 (156)
T PF15627_consen 86 SDPIHIVLIRTDPSGETTLVGSHFLDWRKVLCSGN 120 (156)
T ss_pred CCceEEEEEEecCCCceEeeeeceehHHHHhccCC
Confidence 2677777777766556788888888777766543
No 132
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=97.15 E-value=0.012 Score=42.39 Aligned_cols=85 Identities=20% Similarity=0.291 Sum_probs=59.7
Q ss_pred eEEEEEEEEeEcCCCCCCCCCCcEEEEEE--CCeE----EEeeeeeCCCCCeecCeEEEEeeCCC----ceEEEEEEEcC
Q 029885 28 GQLKVTVVQGKRLVIRDFKSSDPYVVLKL--GNQM----AKTKVINSCLNPVWNEEHSLSLTEPV----GVLSLEVFDKD 97 (186)
Q Consensus 28 ~~L~v~i~~a~~L~~~~~~~~dpy~~v~~--~~~~----~~T~~~~~~~~P~w~e~~~f~v~~~~----~~l~v~v~d~~ 97 (186)
..+.|+|+.+.++.... .++.|+.+.+ +++. ..|..+.. .++.|||.+.|++.-.+ ..|.|+||+..
T Consensus 8 ~~~~v~i~~~~~~~~~~--~~~l~V~v~l~~g~~~L~~pv~T~~v~~-~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~~ 84 (158)
T cd08398 8 SNLRIKILCATYVNVND--IDKIYVRTGIYHGGEPLCDNVNTQRVPC-SNPRWNEWLDYDIYIPDLPRSARLCLSICSVK 84 (158)
T ss_pred CCeEEEEEeeccCCCCC--cCeEEEEEEEEECCEEccCeeEecccCC-CCCccceeEEcccchhcCChhheEEEEEEEEe
Confidence 46889999999887643 4578888866 4432 34444443 67999999999876321 28999999865
Q ss_pred CCC----CCCeeEEEEEecccc
Q 029885 98 RFK----ADDKMGKAYLNLQPI 115 (186)
Q Consensus 98 ~~~----~d~~lG~~~v~l~~l 115 (186)
... ....+|.+.++|-+.
T Consensus 85 ~~~~~k~~~~~iG~~ni~LFd~ 106 (158)
T cd08398 85 GRKGAKEEHCPLAWGNINLFDY 106 (158)
T ss_pred cccCCCCceEEEEEEEEEEECC
Confidence 321 224799999999874
No 133
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=97.12 E-value=0.0096 Score=43.65 Aligned_cols=88 Identities=16% Similarity=0.209 Sum_probs=61.3
Q ss_pred eEEEEEEEEeEcCCCCCCCCCCcEEEEEE--CCeE----EEeeeeeCCCCCeecCeEEEEeeCC---C-ceEEEEEEEcC
Q 029885 28 GQLKVTVVQGKRLVIRDFKSSDPYVVLKL--GNQM----AKTKVINSCLNPVWNEEHSLSLTEP---V-GVLSLEVFDKD 97 (186)
Q Consensus 28 ~~L~v~i~~a~~L~~~~~~~~dpy~~v~~--~~~~----~~T~~~~~~~~P~w~e~~~f~v~~~---~-~~l~v~v~d~~ 97 (186)
..+.|+|..+.++... ....+.|+.+.+ +.+. ..|+.+.-...+.|+|.+.|++.-. . ..|.|+||+..
T Consensus 8 ~~f~i~i~~~~~~~~~-~~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~~ 86 (173)
T cd08693 8 EKFSITLHKISNLNAA-ERTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYEVS 86 (173)
T ss_pred CCEEEEEEEeccCccC-CCCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEEEec
Confidence 4689999999998762 234567777655 4432 4565555567799999999987632 2 28999999865
Q ss_pred CCC----------------CCCeeEEEEEeccccc
Q 029885 98 RFK----------------ADDKMGKAYLNLQPII 116 (186)
Q Consensus 98 ~~~----------------~d~~lG~~~v~l~~l~ 116 (186)
... .+..||.+.++|-+..
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd~~ 121 (173)
T cd08693 87 KKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFDYK 121 (173)
T ss_pred ccccccccccccccccccCcceEEEEEeEEEEccc
Confidence 321 2458999999988743
No 134
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=96.98 E-value=0.014 Score=41.97 Aligned_cols=88 Identities=17% Similarity=0.215 Sum_probs=60.1
Q ss_pred eEEEEEEEEeEcCCCCCCCCCCcEEEEEE--CCeE----EEeeeeeCCCCCeecCeEEEEeeCC----CceEEEEEEEcC
Q 029885 28 GQLKVTVVQGKRLVIRDFKSSDPYVVLKL--GNQM----AKTKVINSCLNPVWNEEHSLSLTEP----VGVLSLEVFDKD 97 (186)
Q Consensus 28 ~~L~v~i~~a~~L~~~~~~~~dpy~~v~~--~~~~----~~T~~~~~~~~P~w~e~~~f~v~~~----~~~l~v~v~d~~ 97 (186)
..++|++....++........+.|+.+.+ +.+. ..|.....+.++.|||.+.|++.-. +..|.++||+..
T Consensus 8 ~~~~i~i~~~~~~~~~~~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~~ 87 (156)
T cd08380 8 FNLRIKIHGITNINLLDSEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAVS 87 (156)
T ss_pred CCeEEEEEeeccccccCCCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEEe
Confidence 35778888877765522344667777765 4432 3444444446899999999986532 228999999976
Q ss_pred CCC--CCCeeEEEEEecccc
Q 029885 98 RFK--ADDKMGKAYLNLQPI 115 (186)
Q Consensus 98 ~~~--~d~~lG~~~v~l~~l 115 (186)
..+ .+..||.+.++|-+.
T Consensus 88 ~~~~~~~~~iG~~~~~lFd~ 107 (156)
T cd08380 88 EPGSKKEVPLGWVNVPLFDY 107 (156)
T ss_pred cCCCCcceEEEEEeEEeEcc
Confidence 543 457999999999874
No 135
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=96.84 E-value=0.0029 Score=56.14 Aligned_cols=88 Identities=23% Similarity=0.379 Sum_probs=67.7
Q ss_pred eEEEEEEEEeEcCCCCCCCCCCcEEEEEECC-------eEEEeeeeeC-CCCCeecC-eEEEE-eeCCCc-eEEEEEEEc
Q 029885 28 GQLKVTVVQGKRLVIRDFKSSDPYVVLKLGN-------QMAKTKVINS-CLNPVWNE-EHSLS-LTEPVG-VLSLEVFDK 96 (186)
Q Consensus 28 ~~L~v~i~~a~~L~~~~~~~~dpy~~v~~~~-------~~~~T~~~~~-~~~P~w~e-~~~f~-v~~~~~-~l~v~v~d~ 96 (186)
+.+.|+|+++.-|..+. ...||.|.+-+ +.++|+++.+ +.||+|+| .|.|. |--++. .|.|.||+.
T Consensus 703 ~t~sV~VISgqFLSdrk---vgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRiavyeE 779 (1189)
T KOG1265|consen 703 ATLSVTVISGQFLSDRK---VGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRIAVYEE 779 (1189)
T ss_pred eeEEEEEEeeeeccccc---cCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhheeeeeecc
Confidence 68999999999887665 34899998821 3478888776 89999985 46675 334444 899999997
Q ss_pred CCCCCCCeeEEEEEecccccccceee
Q 029885 97 DRFKADDKMGKAYLNLQPIISAARLR 122 (186)
Q Consensus 97 ~~~~~d~~lG~~~v~l~~l~~~~~~~ 122 (186)
+ ..|||+-.++++.+..+..+.
T Consensus 780 g----gK~ig~RIlpvd~l~~GYrhv 801 (1189)
T KOG1265|consen 780 G----GKFIGQRILPVDGLNAGYRHV 801 (1189)
T ss_pred C----CceeeeeccchhcccCcceeE
Confidence 5 459999999999888777654
No 136
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=96.82 E-value=0.021 Score=41.21 Aligned_cols=70 Identities=19% Similarity=0.192 Sum_probs=51.8
Q ss_pred CCCCcEEEEEE--CCeE----EEeeeeeCCCCCeecCeEEEEeeCCC----ceEEEEEEEcCCCCCCCeeEEEEEecccc
Q 029885 46 KSSDPYVVLKL--GNQM----AKTKVINSCLNPVWNEEHSLSLTEPV----GVLSLEVFDKDRFKADDKMGKAYLNLQPI 115 (186)
Q Consensus 46 ~~~dpy~~v~~--~~~~----~~T~~~~~~~~P~w~e~~~f~v~~~~----~~l~v~v~d~~~~~~d~~lG~~~v~l~~l 115 (186)
..++.|+.+.+ +++. ..|..+.-+..+.|||...|++.-.+ ..|.|+||+....++...+|.+.++|-+.
T Consensus 28 ~~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd~ 107 (159)
T cd08397 28 PNSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFNK 107 (159)
T ss_pred CCCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEeeECC
Confidence 35678888876 4332 35555555677899999999877432 28999999987655667999999999875
No 137
>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins. PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct
Probab=96.49 E-value=0.049 Score=35.37 Aligned_cols=65 Identities=25% Similarity=0.363 Sum_probs=49.2
Q ss_pred CCCCcEEEEEECCeE-EEeeeeeCCCCCeecCeEEEEeeCCCceEEEEEEEcCCCCCCCeeEEEEEecccc
Q 029885 46 KSSDPYVVLKLGNQM-AKTKVINSCLNPVWNEEHSLSLTEPVGVLSLEVFDKDRFKADDKMGKAYLNLQPI 115 (186)
Q Consensus 46 ~~~dpy~~v~~~~~~-~~T~~~~~~~~P~w~e~~~f~v~~~~~~l~v~v~d~~~~~~d~~lG~~~v~l~~l 115 (186)
|.++..+.+.+++.. .+|.-. ...+..|++.|.+++... +.|+|.||-+|- ..+.|...+.|++.
T Consensus 7 ~~~eV~avLklDn~~VgqT~Wk-~~s~q~WDQ~Fti~LdRs-RELEI~VywrD~---RslCav~~lrLEd~ 72 (98)
T cd08687 7 GCSEVSAVLKLDNTVVGQTQWK-PKSNQAWDQSFTLELERS-RELEIAVYWRDW---RSLCAVKFLKLEDE 72 (98)
T ss_pred cccceEEEEEEcCeEEeecccc-ccccccccceeEEEeecc-cEEEEEEEEecc---hhhhhheeeEhhhh
Confidence 346788888887754 455433 346889999999999875 699999998764 35788888999983
No 138
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=96.42 E-value=0.18 Score=35.29 Aligned_cols=89 Identities=25% Similarity=0.271 Sum_probs=60.8
Q ss_pred ceEEEEEEEEeEcCCCCCCCCCCcEEEEEECCeE---EEeeeeeC-CCCCeecCeEEEEeeC-----C----CceEEEEE
Q 029885 27 FGQLKVTVVQGKRLVIRDFKSSDPYVVLKLGNQM---AKTKVINS-CLNPVWNEEHSLSLTE-----P----VGVLSLEV 93 (186)
Q Consensus 27 ~~~L~v~i~~a~~L~~~~~~~~dpy~~v~~~~~~---~~T~~~~~-~~~P~w~e~~~f~v~~-----~----~~~l~v~v 93 (186)
.-.+.+.|.+..+++. .....|+....++.. ..|..... ...-.|++.|.+.+.- . ...+.|.|
T Consensus 6 kf~~~l~i~~l~~~p~---~~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~~v 82 (143)
T PF10358_consen 6 KFQFDLTIHELENLPS---SNGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKFSV 82 (143)
T ss_pred eEEEEEEEEEeECcCC---CCCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEEEE
Confidence 3567888999888876 233456666665543 45554443 5568999999887551 1 12788999
Q ss_pred EEcCCCCCCCeeEEEEEeccccccc
Q 029885 94 FDKDRFKADDKMGKAYLNLQPIISA 118 (186)
Q Consensus 94 ~d~~~~~~d~~lG~~~v~l~~l~~~ 118 (186)
+.....++...+|.+.++|++....
T Consensus 83 ~~~~~~~~k~~lG~~~inLaey~~~ 107 (143)
T PF10358_consen 83 FEVDGSGKKKVLGKVSINLAEYANE 107 (143)
T ss_pred EEecCCCccceEEEEEEEHHHhhCc
Confidence 8875433336899999999998875
No 139
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=96.37 E-value=0.055 Score=39.52 Aligned_cols=88 Identities=22% Similarity=0.232 Sum_probs=61.6
Q ss_pred eEEEEEEEEeEcCCCCC-CCCCCcEEEEEE--CCeE----EEeeeee----CCCCCeecCeEEEEeeCC---C-ceEEEE
Q 029885 28 GQLKVTVVQGKRLVIRD-FKSSDPYVVLKL--GNQM----AKTKVIN----SCLNPVWNEEHSLSLTEP---V-GVLSLE 92 (186)
Q Consensus 28 ~~L~v~i~~a~~L~~~~-~~~~dpy~~v~~--~~~~----~~T~~~~----~~~~P~w~e~~~f~v~~~---~-~~l~v~ 92 (186)
..+.|+|.++.+++... ....+-|+.+.+ +.+. ..|+... -...+.|||.+.|++.-. . ..|.|+
T Consensus 8 ~~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~it 87 (171)
T cd04012 8 DLLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVLT 87 (171)
T ss_pred ccEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEEEE
Confidence 56889999999998766 446788888866 4433 3444322 133577999999987632 2 289999
Q ss_pred EEEcCCCC---------CCCeeEEEEEecccc
Q 029885 93 VFDKDRFK---------ADDKMGKAYLNLQPI 115 (186)
Q Consensus 93 v~d~~~~~---------~d~~lG~~~v~l~~l 115 (186)
||+..... .+..||.+.++|-+.
T Consensus 88 l~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~ 119 (171)
T cd04012 88 LYGTTSSPDGGSNKQRMGPEELGWVSLPLFDF 119 (171)
T ss_pred EEEEecCCccccccccccceEEEEEeEeeEcc
Confidence 99865443 346999999998874
No 140
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=96.24 E-value=0.17 Score=37.26 Aligned_cols=87 Identities=13% Similarity=0.121 Sum_probs=54.6
Q ss_pred eEEEEEEEEeEcCCCCC-CCCCCcEEEEEE--CCeE---EEeeeeeCCCCCeecCeEEEEeeCCC----ceEEEEEEEcC
Q 029885 28 GQLKVTVVQGKRLVIRD-FKSSDPYVVLKL--GNQM---AKTKVINSCLNPVWNEEHSLSLTEPV----GVLSLEVFDKD 97 (186)
Q Consensus 28 ~~L~v~i~~a~~L~~~~-~~~~dpy~~v~~--~~~~---~~T~~~~~~~~P~w~e~~~f~v~~~~----~~l~v~v~d~~ 97 (186)
..++|+|..+..+ ..+ ......|+.+.+ +... .+|....-+.++.|||.+.|++.-.+ ..|.|+||+..
T Consensus 10 ~~friki~~~~~~-~~~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~~ 88 (178)
T cd08399 10 RKFRVKILGIDIP-VLPRNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCGK 88 (178)
T ss_pred CCEEEEEEeeccc-CcCCCCceEEEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEEEe
Confidence 3577888877633 322 333345666644 4332 35555555778999999999877432 28999999853
Q ss_pred CCC----------------CCCeeEEEEEecccc
Q 029885 98 RFK----------------ADDKMGKAYLNLQPI 115 (186)
Q Consensus 98 ~~~----------------~d~~lG~~~v~l~~l 115 (186)
... .+..||-+.+.|-+.
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~l~wvn~~LFD~ 122 (178)
T cd08399 89 APALSSKKSAESPSSESKGKHQLLYYVNLLLIDH 122 (178)
T ss_pred cCcccccccccccccccccccceEEEEEEEEEcC
Confidence 211 245788888888763
No 141
>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=96.20 E-value=0.0087 Score=47.38 Aligned_cols=91 Identities=20% Similarity=0.168 Sum_probs=66.7
Q ss_pred CCcceEEEEEEEEeEcCCCCC---CCCCCcEEEEEECCe-EEEeeeeeCCCCCeecCeEEEEeeCCCceEEEEEEEcCCC
Q 029885 24 RQPFGQLKVTVVQGKRLVIRD---FKSSDPYVVLKLGNQ-MAKTKVINSCLNPVWNEEHSLSLTEPVGVLSLEVFDKDRF 99 (186)
Q Consensus 24 ~~~~~~L~v~i~~a~~L~~~~---~~~~dpy~~v~~~~~-~~~T~~~~~~~~P~w~e~~~f~v~~~~~~l~v~v~d~~~~ 99 (186)
....|.|.+.+..+++|+... +-.-+-||++..+.+ +.+|.+......-.|.|.|..++... ..+.+-||.|++-
T Consensus 47 ~s~tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~drqh~aRt~vrs~~~~f~w~e~F~~Dvv~~-~vl~~lvySW~pq 125 (442)
T KOG1452|consen 47 VSSTGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPDRQHPARTRVRSSGPGFAWAEDFKHDVVNI-EVLHYLVYSWPPQ 125 (442)
T ss_pred ecccceEEEEEecccccccChhccCceeeeeeeeeecccCccccccccCCCCccchhhceeecccc-eeeeEEEeecCch
Confidence 344588999999999998765 335678999887654 46777766677788999999988865 5788889998887
Q ss_pred CCCCeeEEEEEecccc
Q 029885 100 KADDKMGKAYLNLQPI 115 (186)
Q Consensus 100 ~~d~~lG~~~v~l~~l 115 (186)
.++.+.-...+.+..+
T Consensus 126 ~RHKLC~~g~l~~~~v 141 (442)
T KOG1452|consen 126 RRHKLCHLGLLEAFVV 141 (442)
T ss_pred hhccccccchhhhhhh
Confidence 6777544334444443
No 142
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=96.04 E-value=0.074 Score=43.11 Aligned_cols=99 Identities=15% Similarity=0.226 Sum_probs=77.6
Q ss_pred EEEEEEEeEcCCCCCCCCCCcEEEEEECCeEEEeeeeeCCCCCeecCeEEEEeeCC--------CceEEEEEEEcC-CCC
Q 029885 30 LKVTVVQGKRLVIRDFKSSDPYVVLKLGNQMAKTKVINSCLNPVWNEEHSLSLTEP--------VGVLSLEVFDKD-RFK 100 (186)
Q Consensus 30 L~v~i~~a~~L~~~~~~~~dpy~~v~~~~~~~~T~~~~~~~~P~w~e~~~f~v~~~--------~~~l~v~v~d~~-~~~ 100 (186)
+.|.|++|++.+... .....+..++++....|..+..+..|.|+..+..++... ...|++++|.-+ ..+
T Consensus 2 ivl~i~egr~F~~~~--~~~~vv~a~~ng~~l~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~~~~~ 79 (340)
T PF12416_consen 2 IVLSILEGRNFPQRP--RHPIVVEAKFNGESLETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVDGSTG 79 (340)
T ss_pred EEEEEecccCCCCCC--CccEEEEEEeCCceeeecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEecCCCC
Confidence 578899999887652 345677788899999999999999999999998886632 238999999887 555
Q ss_pred CCCeeEEEEEecccc---ccc--ceeeeEEEecCC
Q 029885 101 ADDKMGKAYLNLQPI---ISA--ARLRHLVHVSSG 130 (186)
Q Consensus 101 ~d~~lG~~~v~l~~l---~~~--~~~~~~~~l~~~ 130 (186)
..+.+|.+.++|... ..+ .....||.|-.-
T Consensus 80 ~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~ 114 (340)
T PF12416_consen 80 KRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSS 114 (340)
T ss_pred cceeccEEEEEccccccccccccccCCCeeEcccc
Confidence 778999999999988 444 455678877544
No 143
>PF07162 B9-C2: Ciliary basal body-associated, B9 protein; InterPro: IPR010796 Proteins in this entry include the MSK1 protein (Q9NXB0 from SWISSPROT) and other known or predicted flagellar basal body proteome components [] or cilia-containing species. Although the function is unknown, a cilia-specific role has been suggested for the poorly characterised B9 domain [, , ]. Mutations in MSK1 have been shown to cause Meckel syndrome type 1, a severe foetal development disorder that has been reported in most populations.
Probab=95.89 E-value=0.44 Score=34.70 Aligned_cols=80 Identities=20% Similarity=0.309 Sum_probs=52.9
Q ss_pred EEEEEEEeEcCCCCCCCCCCcEEEEEE----------CCe-EEEeeeeeC-----CCCCeecCeEEEEeeCC--Cc--eE
Q 029885 30 LKVTVVQGKRLVIRDFKSSDPYVVLKL----------GNQ-MAKTKVINS-----CLNPVWNEEHSLSLTEP--VG--VL 89 (186)
Q Consensus 30 L~v~i~~a~~L~~~~~~~~dpy~~v~~----------~~~-~~~T~~~~~-----~~~P~w~e~~~f~v~~~--~~--~l 89 (186)
+.-.|..|.+. ...+.||+..+ +.. ...|.+... ...-.|+..|++.+... .. .|
T Consensus 4 v~G~I~~a~~f-----~~~~l~~~y~~~~g~~W~~~~g~~~~G~Tq~~~~~~~~~~~~~~f~~P~d~~~~~~~~~gwP~L 78 (168)
T PF07162_consen 4 VIGEIESAEGF-----EEDNLYCRYQLVHGPDWKLISGLSLEGQTQISKSSSYGNDDVAVFNHPFDLHFKSTNPQGWPQL 78 (168)
T ss_pred EEEEEEEEECC-----CCCCEEEEEEEEeCCCeEECCCCcceEEcceeecCcccCCCceEEeccEEEEEEeCCCCCCceE
Confidence 34456777755 34467888776 122 345555543 33467888887766533 22 89
Q ss_pred EEEEEEcCCCCCCCeeEEEEEeccc
Q 029885 90 SLEVFDKDRFKADDKMGKAYLNLQP 114 (186)
Q Consensus 90 ~v~v~d~~~~~~d~~lG~~~v~l~~ 114 (186)
.++||..|..+++...|-..+.|-.
T Consensus 79 ~l~V~~~D~~gr~~~~GYG~~~lP~ 103 (168)
T PF07162_consen 79 VLQVYSLDSWGRDRVEGYGFCHLPT 103 (168)
T ss_pred EEEEEEEcccCCeEEeEEeEEEeCC
Confidence 9999999999999988876666543
No 144
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=95.54 E-value=0.39 Score=35.69 Aligned_cols=54 Identities=19% Similarity=0.241 Sum_probs=40.5
Q ss_pred EEEeeeeeCCCCCeecCeEEEEeeCCC---ceEEEEEEEcCCCC-C-CCeeEEEEEecc
Q 029885 60 MAKTKVINSCLNPVWNEEHSLSLTEPV---GVLSLEVFDKDRFK-A-DDKMGKAYLNLQ 113 (186)
Q Consensus 60 ~~~T~~~~~~~~P~w~e~~~f~v~~~~---~~l~v~v~d~~~~~-~-d~~lG~~~v~l~ 113 (186)
.++|.+...+.+|.|+|++.+.++... ..|.|++++..... + ...+|-+.++|-
T Consensus 54 e~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL~ 112 (189)
T cd08695 54 EYRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCSTKDKGEKKLFGFSFVPLM 112 (189)
T ss_pred eEEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEeeeccCCCCCceEEEEEeec
Confidence 478888888999999999999988542 27888887743221 1 257999999984
No 145
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=95.38 E-value=0.52 Score=34.74 Aligned_cols=54 Identities=20% Similarity=0.268 Sum_probs=33.7
Q ss_pred EEeeeeeCCCCCeecCeEEEEeeCCC---ceEEEEEEEcCCCC-C--CCeeEEEEEeccc
Q 029885 61 AKTKVINSCLNPVWNEEHSLSLTEPV---GVLSLEVFDKDRFK-A--DDKMGKAYLNLQP 114 (186)
Q Consensus 61 ~~T~~~~~~~~P~w~e~~~f~v~~~~---~~l~v~v~d~~~~~-~--d~~lG~~~v~l~~ 114 (186)
+.|.+...+.+|.|+|++.+.++... ..|.|++++...-. + +..+|.+.++|-+
T Consensus 61 ~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~ 120 (184)
T PF14429_consen 61 YYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD 120 (184)
T ss_dssp EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred EEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence 56777778899999999999998653 28889999854322 1 2699999999987
No 146
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=95.19 E-value=0.24 Score=34.91 Aligned_cols=54 Identities=20% Similarity=0.293 Sum_probs=39.6
Q ss_pred EeeeeeCC-CCCeecCeEEEEeeC---CC-ceEEEEEEEcCCCCCC----CeeEEEEEecccc
Q 029885 62 KTKVINSC-LNPVWNEEHSLSLTE---PV-GVLSLEVFDKDRFKAD----DKMGKAYLNLQPI 115 (186)
Q Consensus 62 ~T~~~~~~-~~P~w~e~~~f~v~~---~~-~~l~v~v~d~~~~~~d----~~lG~~~v~l~~l 115 (186)
.|....-+ .++.|+|.+.|++.- +. ..|.|+||........ ..||.+.++|-+.
T Consensus 23 ~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~lFd~ 85 (142)
T PF00792_consen 23 STSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPLFDY 85 (142)
T ss_dssp E-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEESB-T
T ss_pred eccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEeECC
Confidence 56666665 899999999998762 22 3899999987665444 6999999999876
No 147
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=94.85 E-value=0.093 Score=44.67 Aligned_cols=69 Identities=28% Similarity=0.422 Sum_probs=52.6
Q ss_pred EEEeeeeeCCCCCeecCeEEEEeeCCCc-eEEEEEEEcCC----CCCCCeeEEEEEecccccccceeeeEEEec
Q 029885 60 MAKTKVINSCLNPVWNEEHSLSLTEPVG-VLSLEVFDKDR----FKADDKMGKAYLNLQPIISAARLRHLVHVS 128 (186)
Q Consensus 60 ~~~T~~~~~~~~P~w~e~~~f~v~~~~~-~l~v~v~d~~~----~~~d~~lG~~~v~l~~l~~~~~~~~~~~l~ 128 (186)
..+|.++.+.++|.|.+.|.+....+.. .+.+++++-+. ....+|+|+++..+..+........-+.+.
T Consensus 42 ~~rte~i~~~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~~~~~~~l~~~ 115 (529)
T KOG1327|consen 42 VGRTEVIRNVLNPFFTKKFLLQYRFEKVQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSSSGLTGPLLLK 115 (529)
T ss_pred ccceeeeeccCCccceeeechhheeeeeeeEEEEEeecCCccCCcchhcccceeeeehhhhhhhhhhhhhhhcc
Confidence 3589999999999999998887776543 88999998554 345779999999999988765544333333
No 148
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=94.83 E-value=0.99 Score=33.70 Aligned_cols=54 Identities=13% Similarity=0.241 Sum_probs=40.6
Q ss_pred EEEeeeeeCCCCCeecCeEEEEeeCC---CceEEEEEEEcCCC----CCCCeeEEEEEecc
Q 029885 60 MAKTKVINSCLNPVWNEEHSLSLTEP---VGVLSLEVFDKDRF----KADDKMGKAYLNLQ 113 (186)
Q Consensus 60 ~~~T~~~~~~~~P~w~e~~~f~v~~~---~~~l~v~v~d~~~~----~~d~~lG~~~v~l~ 113 (186)
.++|-+.....+|.|+|++.+.++.. ...|.|++++.... .....+|-+.++|-
T Consensus 54 e~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~ 114 (196)
T cd08694 54 EYKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLM 114 (196)
T ss_pred eEEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEeee
Confidence 47888888899999999999998854 23888998874321 12357899999985
No 149
>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain. Outlier of C2 family.
Probab=93.79 E-value=0.92 Score=29.93 Aligned_cols=68 Identities=19% Similarity=0.273 Sum_probs=45.0
Q ss_pred EEEEEEEeEcCCCCC-CCCCCcEEEEEE--CCeE----EEeeeeeCCCCCeecCeEEEEeeCC---C-ceEEEEEEEcC
Q 029885 30 LKVTVVQGKRLVIRD-FKSSDPYVVLKL--GNQM----AKTKVINSCLNPVWNEEHSLSLTEP---V-GVLSLEVFDKD 97 (186)
Q Consensus 30 L~v~i~~a~~L~~~~-~~~~dpy~~v~~--~~~~----~~T~~~~~~~~P~w~e~~~f~v~~~---~-~~l~v~v~d~~ 97 (186)
+.+.+....+..... ...++.|+.+.+ +++. ..|..+.-...+.|||...|++.-. . ..|.++||+..
T Consensus 13 ~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~ 91 (100)
T smart00142 13 LVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEVK 91 (100)
T ss_pred eEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEee
Confidence 556667776665544 223578888866 4432 3555555466799999999986632 2 28999999854
No 150
>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain
Probab=92.90 E-value=2.7 Score=30.57 Aligned_cols=71 Identities=14% Similarity=0.237 Sum_probs=53.2
Q ss_pred CCCcEEEEEECCeE-EEeeeeeC--CCCCeecCeEEEEeeCCCceEEEEEEEcCCCCCCCeeEEEEEeccccccc
Q 029885 47 SSDPYVVLKLGNQM-AKTKVINS--CLNPVWNEEHSLSLTEPVGVLSLEVFDKDRFKADDKMGKAYLNLQPIISA 118 (186)
Q Consensus 47 ~~dpy~~v~~~~~~-~~T~~~~~--~~~P~w~e~~~f~v~~~~~~l~v~v~d~~~~~~d~~lG~~~v~l~~l~~~ 118 (186)
...-|+++.++++. .+|+...- ...-.|++.|.+.+..-...|.++||.... ..+.+|+.+.+++-.....
T Consensus 36 ~~~~~ikl~~N~k~V~~T~~~~l~~dF~v~f~~~f~v~i~~~Pesi~l~i~E~~~-~~~~~la~v~vpvP~~~~~ 109 (168)
T PF15625_consen 36 KTRYYIKLFFNDKEVSRTRSRPLWSDFRVHFNEIFNVQITRWPESIKLEIYEKSG-LSDRLLAEVFVPVPGSTVH 109 (168)
T ss_pred heeEEEEEEECCEEEEeeeeEecCCCeEEeccCEEEEEEecCCCEEEEEEEEccC-ccceEEEEEEeeCCCCccc
Confidence 45689999887765 45554443 333467899999998766799999999887 4788999999998765443
No 151
>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function. It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.
Probab=92.49 E-value=1.6 Score=29.35 Aligned_cols=67 Identities=18% Similarity=0.331 Sum_probs=35.9
Q ss_pred EEEEEECC-eEEEeeeeeCCCCCeecCeEEEEeeCCC--------ceEEEEEEEcCCCCCCCeeEEEEEecccccccc
Q 029885 51 YVVLKLGN-QMAKTKVINSCLNPVWNEEHSLSLTEPV--------GVLSLEVFDKDRFKADDKMGKAYLNLQPIISAA 119 (186)
Q Consensus 51 y~~v~~~~-~~~~T~~~~~~~~P~w~e~~~f~v~~~~--------~~l~v~v~d~~~~~~d~~lG~~~v~l~~l~~~~ 119 (186)
||.+.+-+ +.+.|.++. +.+|.++.+-.+.+.... ..+.++++..-.. ....+|.+++++.++.+..
T Consensus 2 Fct~dFydfEtq~Tpvv~-G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~g~-d~~tla~~~i~l~~ll~~~ 77 (107)
T PF11618_consen 2 FCTYDFYDFETQTTPVVR-GLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQALGS-DFETLAAGQISLRPLLESN 77 (107)
T ss_dssp EEEE-STT---EE---EE-SSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE-SS--EEEEEEEEE--SHHHH--
T ss_pred EEEEEeeceeeeccccee-CCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeeccC-CeEEEEEEEeechhhhcCC
Confidence 55555544 456777776 889999999998887542 3788999886532 4569999999999988554
No 152
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=90.93 E-value=3.9 Score=29.96 Aligned_cols=52 Identities=27% Similarity=0.402 Sum_probs=38.0
Q ss_pred eeeeeCCCCCeecCeEEEEeeCCC---ceEEEEEEEcCCC-----CCCCeeEEEEEeccc
Q 029885 63 TKVINSCLNPVWNEEHSLSLTEPV---GVLSLEVFDKDRF-----KADDKMGKAYLNLQP 114 (186)
Q Consensus 63 T~~~~~~~~P~w~e~~~f~v~~~~---~~l~v~v~d~~~~-----~~d~~lG~~~v~l~~ 114 (186)
+.++....+|.|++++.+.++... ..|.|++++-.-- .....+|-+.++|-+
T Consensus 56 ~sv~~~~k~p~f~deiKi~LP~~l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~~ 115 (178)
T cd08679 56 TSVVYYHKNPVFNDEIKIQLPADLTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLMD 115 (178)
T ss_pred EEEEEcCCCCCCceeEEEecCCccCCCeEEEEEEEccccccccCCCccceEEEEEEeccc
Confidence 344444489999999999987542 2888999885422 235689999999885
No 153
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=88.86 E-value=3 Score=30.73 Aligned_cols=56 Identities=18% Similarity=0.216 Sum_probs=41.7
Q ss_pred eEEEeeeeeCCCCCeecCeEEEEeeCCC---ceEEEEEEEcCCC------CCCCeeEEEEEeccc
Q 029885 59 QMAKTKVINSCLNPVWNEEHSLSLTEPV---GVLSLEVFDKDRF------KADDKMGKAYLNLQP 114 (186)
Q Consensus 59 ~~~~T~~~~~~~~P~w~e~~~f~v~~~~---~~l~v~v~d~~~~------~~d~~lG~~~v~l~~ 114 (186)
..+.|.+...+.+|.|++++.+.++... ..|-|++++-+-- .....+|-+.++|-+
T Consensus 54 ~~~~S~V~yHnk~P~f~DEiKi~LP~~l~~~hHLlFtF~Hvs~~~k~~~~~~e~~~Gys~lPL~~ 118 (179)
T cd08696 54 TEAYTAVTYHNKSPDFYDEIKIKLPADLTDNHHLLFTFYHISCQKKQEGGSVETPIGYTWLPLLR 118 (179)
T ss_pred eeEEEEEEEeCCCCcccceEEEEcCCCCCCCeEEEEEEEEeeccccccCCCccceEEEEEEeeec
Confidence 3478888889999999999999888542 2788888873221 123579999999875
No 154
>PTZ00447 apical membrane antigen 1-like protein; Provisional
Probab=79.60 E-value=21 Score=29.28 Aligned_cols=81 Identities=11% Similarity=0.151 Sum_probs=56.5
Q ss_pred EEEEEEEEeEcCCCCCCCCCCcEEEEEECCeEEEeeeeeCCCCCee--cCeEEEEeeCCCceEEEEEEEcCCCCCCCeeE
Q 029885 29 QLKVTVVQGKRLVIRDFKSSDPYVVLKLGNQMAKTKVINSCLNPVW--NEEHSLSLTEPVGVLSLEVFDKDRFKADDKMG 106 (186)
Q Consensus 29 ~L~v~i~~a~~L~~~~~~~~dpy~~v~~~~~~~~T~~~~~~~~P~w--~e~~~f~v~~~~~~l~v~v~d~~~~~~d~~lG 106 (186)
.|.|.|.+-.++. -....|+.+..+....+|..+.-+..-.- .+.....+..-+..|.+.+|-.... +..-||
T Consensus 59 ~LLVeI~EI~~i~----k~khiyIef~~Gr~d~TT~~IpTsKK~RI~IqqRV~IkIRQcDnTLkI~lfKKkLv-kk~hIg 133 (508)
T PTZ00447 59 YLLVKINEIFNIN----KYKHIYIIFSTDKYDFTTDEIPTNKKNRIHIDQRVDIKIRQCDETLRVDLFTTKLT-KKVHIG 133 (508)
T ss_pred eEEEEehhhhccc----cceeEEEEEEcCceEEEccccccCcCceEEEeeeeeeeeeecCceEEEEEEecccc-ceeEEE
Confidence 5667776655542 24468889988888888866554433322 3445556666667999999998876 567899
Q ss_pred EEEEeccc
Q 029885 107 KAYLNLQP 114 (186)
Q Consensus 107 ~~~v~l~~ 114 (186)
.+.+.+..
T Consensus 134 dI~InIn~ 141 (508)
T PTZ00447 134 QIKIDINA 141 (508)
T ss_pred EEEecccH
Confidence 99999875
No 155
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=76.53 E-value=28 Score=25.78 Aligned_cols=56 Identities=20% Similarity=0.271 Sum_probs=42.1
Q ss_pred eEEEeeeeeCCCCCeecCeEEEEeeCCC---ceEEEEEEEcC--CC-------CCCCeeEEEEEeccc
Q 029885 59 QMAKTKVINSCLNPVWNEEHSLSLTEPV---GVLSLEVFDKD--RF-------KADDKMGKAYLNLQP 114 (186)
Q Consensus 59 ~~~~T~~~~~~~~P~w~e~~~f~v~~~~---~~l~v~v~d~~--~~-------~~d~~lG~~~v~l~~ 114 (186)
....|.+...+.+|.|.|++.+.++... ..|.|++|+-. .. .....+|-+.++|-.
T Consensus 56 ~~~~s~V~yh~k~P~f~dEiKI~LP~~l~~~hHLlFtFyHvsc~~~~k~~~~~~~e~~~Gys~lPLl~ 123 (185)
T cd08697 56 TSAYAAVLHHNQNPEFYDEIKIELPTQLHEKHHLLFTFYHVSCDINKKGKKKDGVETPVGYAWLPLLK 123 (185)
T ss_pred eEEEEEEEEcCCCCccceeEEEecCCcCCCCeeEEEEEEeeccccccccccCCCccceEEEEEEeeec
Confidence 3578888889999999999999887532 27889998854 11 123579999999875
No 156
>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=70.33 E-value=1.3 Score=38.89 Aligned_cols=69 Identities=14% Similarity=0.105 Sum_probs=48.4
Q ss_pred CCCcEEEEEECCeE-EEeeeeeCCCCCeecCeEEEEeeCCCceEEEEEEEcCCCCCCCeeEEEEEeccccc
Q 029885 47 SSDPYVVLKLGNQM-AKTKVINSCLNPVWNEEHSLSLTEPVGVLSLEVFDKDRFKADDKMGKAYLNLQPII 116 (186)
Q Consensus 47 ~~dpy~~v~~~~~~-~~T~~~~~~~~P~w~e~~~f~v~~~~~~l~v~v~d~~~~~~d~~lG~~~v~l~~l~ 116 (186)
..+||+.+.+.... ..+...+.+..|.|+++|.+.+... ..+.+.|+.......+.+...+.+..++..
T Consensus 27 al~~y~~v~vk~~~~~~~~~~~~~~~~~~~~~F~~~v~~~-~~~~i~v~~~~~~~~~~~~a~~~~~~e~~k 96 (694)
T KOG0694|consen 27 ALQPYLAVELKVKQGAENMTKVELRIPELRETFHVEVVAG-GAKNIIVLLKSPDPKALSEAQLSLQEESQK 96 (694)
T ss_pred hhhhhheeccceeecccccCCCCCCCchhhhheeeeeecC-CceEEEEEecCCcchhhHHHhHHHHHHHHH
Confidence 45788888875443 3455566789999999999997765 688889988765555555555555544444
No 157
>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]
Probab=69.25 E-value=4.1 Score=37.06 Aligned_cols=82 Identities=15% Similarity=0.222 Sum_probs=64.1
Q ss_pred CCcEEEEEECCeE-EEeeeeeCC-CCCeecCeEEEEeeCCCceEEEEEEEcCCCCCCCeeEEEEEecccccccceeeeEE
Q 029885 48 SDPYVVLKLGNQM-AKTKVINSC-LNPVWNEEHSLSLTEPVGVLSLEVFDKDRFKADDKMGKAYLNLQPIISAARLRHLV 125 (186)
Q Consensus 48 ~dpy~~v~~~~~~-~~T~~~~~~-~~P~w~e~~~f~v~~~~~~l~v~v~d~~~~~~d~~lG~~~v~l~~l~~~~~~~~~~ 125 (186)
.++|+.+.+.... .+|....+. .+|.|.+.|..........+.+.+-+.+..+....+|.+.+++..+..+.....|+
T Consensus 138 ~e~Ylt~~l~~~~~~~t~~~~~f~e~s~~~f~~~~~~~h~~g~v~~~~~~~~~~G~s~~w~~v~~s~~~~~~~~~~~~~~ 217 (887)
T KOG1329|consen 138 LENYLTVVLHKARYRRTHVIYEFLENSRWSFSFDIGFAHKAGYVIFRVKGARVPGWSKRWGRVKISFLQYCSGHRIGGWF 217 (887)
T ss_pred ccchheeeechhhhhchhhhhcccccchhhhhccccccccccEEEEeecCCccccceeEEEEeccchhhhhcccccccee
Confidence 3788888876544 566666665 68999999988877776789999988888765789999999999999987777776
Q ss_pred EecC
Q 029885 126 HVSS 129 (186)
Q Consensus 126 ~l~~ 129 (186)
.+-.
T Consensus 218 ~Il~ 221 (887)
T KOG1329|consen 218 PILD 221 (887)
T ss_pred eeec
Confidence 5543
No 158
>KOG4269 consensus Rac GTPase-activating protein BCR/ABR [Signal transduction mechanisms]
Probab=60.39 E-value=8.7 Score=35.16 Aligned_cols=72 Identities=22% Similarity=0.284 Sum_probs=50.0
Q ss_pred cccceeeeccccccCCcceEEEEEEEEeEcCCCCCCCCCCcEEEEEEC-----CeEEEeeeeeCCCCCeecCeEEEEeeC
Q 029885 10 CQVLKAIHLRNCIMRQPFGQLKVTVVQGKRLVIRDFKSSDPYVVLKLG-----NQMAKTKVINSCLNPVWNEEHSLSLTE 84 (186)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~L~v~i~~a~~L~~~~~~~~dpy~~v~~~-----~~~~~T~~~~~~~~P~w~e~~~f~v~~ 84 (186)
..+....+-+..-.....|.+++.+.+|..+.. ..+.||..... ..+.+|.++.++..|.||++++..+-.
T Consensus 741 s~i~~t~NddD~eSpl~ygflh~~vhsat~lkq----s~~lY~Td~v~e~~~~~s~~st~~iadT~~~~~npe~hv~~~~ 816 (1112)
T KOG4269|consen 741 SNIPATYNDDDDESPLLYGFLHVIVHSATGLKQ----SRNLYCTDEVDEFGYFVSKASTRVIADTAEPQWNPEKHVPVIE 816 (1112)
T ss_pred cccccccccccccCcccccceeeeecccccccc----ccceeeehhhhhhccccccccceeeecccCCCCChhcccchhh
Confidence 344444444444343455889999999988753 34567776552 356789999999999999999887664
Q ss_pred C
Q 029885 85 P 85 (186)
Q Consensus 85 ~ 85 (186)
.
T Consensus 817 s 817 (1112)
T KOG4269|consen 817 S 817 (1112)
T ss_pred c
Confidence 3
No 159
>KOG4028 consensus Uncharacterized conserved protein [Function unknown]
Probab=56.72 E-value=49 Score=23.11 Aligned_cols=26 Identities=19% Similarity=0.312 Sum_probs=20.3
Q ss_pred eEEEEEEEcCCCCCCCeeEE--EEEecc
Q 029885 88 VLSLEVFDKDRFKADDKMGK--AYLNLQ 113 (186)
Q Consensus 88 ~l~v~v~d~~~~~~d~~lG~--~~v~l~ 113 (186)
.|.++||++|++++.++-|- +.+|-+
T Consensus 75 rl~~qiw~~dnfgr~eiagyg~~~lpss 102 (175)
T KOG4028|consen 75 RLHFQIWHHDNFGRCEIAGYGFCHLPSS 102 (175)
T ss_pred eeeeeeeecCcccceeecccceEeccCC
Confidence 89999999999998887655 444444
No 160
>KOG0904 consensus Phosphatidylinositol 3-kinase catalytic subunit (p110) [Signal transduction mechanisms]
Probab=54.53 E-value=83 Score=29.25 Aligned_cols=67 Identities=18% Similarity=0.344 Sum_probs=41.4
Q ss_pred eEEEEEEEEeEcCCCCCCCCCCcEEEEEE----CCe----EEEeeeeeCCCCCeecCeEEEEeeCCC--c--eEEEEEEE
Q 029885 28 GQLKVTVVQGKRLVIRDFKSSDPYVVLKL----GNQ----MAKTKVINSCLNPVWNEEHSLSLTEPV--G--VLSLEVFD 95 (186)
Q Consensus 28 ~~L~v~i~~a~~L~~~~~~~~dpy~~v~~----~~~----~~~T~~~~~~~~P~w~e~~~f~v~~~~--~--~l~v~v~d 95 (186)
..++|+++.+.++... ..-|-++.|.. |.. ...|.-+....+|.||+.+.|++.-.+ + .|.+.||.
T Consensus 343 ~~frI~l~~is~~n~~--~t~~~kV~V~~~lyhG~e~Lc~~~sTs~v~~~~~~~Wn~~leFDI~i~DLPr~ArLc~~i~~ 420 (1076)
T KOG0904|consen 343 RPFRIKLVGISKVNLP--ETVDLKVFVEAGLYHGTEVLCKTRSTSEVPGCSFPLWNEWLEFDIYIKDLPRMARLCLAIYA 420 (1076)
T ss_pred CceEEEEeeccccCCC--cccceEEEEEEEEEECCeehhcccccCCCCCccchhccceeEeeeecCCCChhhhheeeeeE
Confidence 4677888877655322 23344554443 433 245555555789999999999887432 2 67777775
Q ss_pred c
Q 029885 96 K 96 (186)
Q Consensus 96 ~ 96 (186)
-
T Consensus 421 v 421 (1076)
T KOG0904|consen 421 V 421 (1076)
T ss_pred e
Confidence 3
No 161
>PF14924 DUF4497: Protein of unknown function (DUF4497)
Probab=49.99 E-value=75 Score=21.21 Aligned_cols=31 Identities=13% Similarity=0.048 Sum_probs=21.3
Q ss_pred eEEEEEEEcCC---CCCCCeeEEEEEeccccccc
Q 029885 88 VLSLEVFDKDR---FKADDKMGKAYLNLQPIISA 118 (186)
Q Consensus 88 ~l~v~v~d~~~---~~~d~~lG~~~v~l~~l~~~ 118 (186)
.|.+.+++-.. .....++|.+.+++.+....
T Consensus 30 pl~i~~~~~~~~~~~~~~~liG~~~i~l~~~~~~ 63 (112)
T PF14924_consen 30 PLYIVVKKVPPGFPTPPPMLIGSCPISLAEAFNR 63 (112)
T ss_pred ceEEEEEecCCCCCCCccceeeEEEecHHHHHHH
Confidence 66776665332 34566999999999987543
No 162
>PF10409 PTEN_C2: C2 domain of PTEN tumour-suppressor protein; InterPro: IPR014020 Tensins constitute an eukaryotic family of lipid phosphatases that are defined by the presence of two adjacent domains: a lipid phosphatase domain and a C2-like domain. The tensin-type C2 domain has a structure similar to the classical C2 domain (see IPR000008 from INTERPRO) that mediates the Ca2+-dependent membrane recruitment of several signalling proteins. However the tensin-type C2 domain lacks two of the three conserved loops that bind Ca2+, and in this respect it is similar to the C2 domains of PKC-type [, ]. The tensin-type C2 domain can bind phopholipid membranes in a Ca2+ independent manner []. In the tumour suppressor protein PTEN, the best characterised member of the family, the lipid phosphatase domain was shown to specifically dephosphorylate the D3 position of the inositol ring of the lipid second messenger, phosphatydilinositol-3-4-5-triphosphate (PIP3). The lipid phosphatase domain contains the signature motif HCXXGXXR present in the active sites of protein tyrosine phosphatases (PTPs) and dual specificity phosphatases (DSPs). Furthermore, two invariant lysines are found only in the tensin-type phosphatase motif (HCKXGKXR) and are suspected to interact with the phosphate group at position D1 and D5 of the inositol ring [, ]. The C2 domain is found at the C terminus of the tumour suppressor protein PTEN (phosphatidyl-inositol triphosphate phosphatase). This domain may include a CBR3 loop, indicating a central role in membrane binding. This domain associates across an extensive interface with the N-terminal phosphatase domain DSPc suggesting that the C2 domain productively positions the catalytic part of the protein on the membrane. The crystal structure of the PTEN tumour suppressor has been solved []. The lipid phosphatase domain has a structure similar to the dual specificity phosphatase (see IPR000387 from INTERPRO). However, PTEN has a larger active site pocket that could be important to accommodate PI(3,4,5)P3. Proteins known to contain a phosphatase and a C2 tensin-type domain are listed below: Tensin, a focal-adhesion molecule that binds to actin filaments. It may be involved in cell migration, cartilage development and in linking signal transduction pathways to the cytoskeleton. Phosphatase and tensin homologue deleted on chromosome 10 protein (PTEN). It antagonizes PI 3-kinase signalling by dephosphorylating the 3-position of the inositol ring of PI(3,4,5)P3 and thus inactivates downstream signalling. It plays major roles both during development and in the adult to control cell size, growth, and survival. Auxilin. It binds clathrin heavy chain and promotes its assembly into regular cages. Cyclin G-associated kinase or auxilin-2. It is a potential regulator of clathrin-mediated membrane trafficking. ; GO: 0005515 protein binding; PDB: 3N0A_A 1D5R_A 3V0D_B 3V0H_B 3V0G_A 3V0F_B 3V0J_A 3V0I_A 3AWE_B 3AWG_C ....
Probab=44.58 E-value=1e+02 Score=21.05 Aligned_cols=87 Identities=14% Similarity=0.125 Sum_probs=48.5
Q ss_pred EEEEEEEEeEcCCCCC-CCCCCcEEEEEECCeEEE-eeeeeCCCCCee-cCeEEEEeeCC---CceEEEEEEEcCC-CCC
Q 029885 29 QLKVTVVQGKRLVIRD-FKSSDPYVVLKLGNQMAK-TKVINSCLNPVW-NEEHSLSLTEP---VGVLSLEVFDKDR-FKA 101 (186)
Q Consensus 29 ~L~v~i~~a~~L~~~~-~~~~dpy~~v~~~~~~~~-T~~~~~~~~P~w-~e~~~f~v~~~---~~~l~v~v~d~~~-~~~ 101 (186)
.|.+.-+.-.++|..+ .+..+||+.++-+..... +...... .... ...+.+.+... ...+.|.+|+... ...
T Consensus 5 ~l~L~~I~l~~iP~f~~~~gc~p~i~I~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~GDV~i~~~~~~~~~~~ 83 (134)
T PF10409_consen 5 PLFLKSIILHGIPNFNSGGGCRPYIEIYNGGKKVFSTSKSYED-PKSYEQDSVIIELPKNLPLRGDVLIKFYHKRSSSMS 83 (134)
T ss_dssp EEEEEEEEEES-TTSTTSSCCTEEEEEEETTEEEEETCCTCCC-CCEEETTCEEEEEEEEEEEESEEEEEEEECETTECC
T ss_pred eEEEEEEEEECCCccCCCCCEEEEEEEECCCccEEEeccceec-cccccceeEEEEeCCCCeEeCCEEEEEEeCCCcccc
Confidence 3444444456677665 667799999998776642 2221111 1111 23344443321 2378899998773 335
Q ss_pred CCeeEEEEEeccccc
Q 029885 102 DDKMGKAYLNLQPII 116 (186)
Q Consensus 102 d~~lG~~~v~l~~l~ 116 (186)
++.+.++++.-.-+.
T Consensus 84 ~~~~f~~~FnT~Fi~ 98 (134)
T PF10409_consen 84 KEKMFRFWFNTGFIE 98 (134)
T ss_dssp CEEEEEEEEEGGGSB
T ss_pred cCeEEEEEEeeeeee
Confidence 667888777655444
No 163
>KOG0906 consensus Phosphatidylinositol 3-kinase VPS34, involved in signal transduction [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=44.42 E-value=21 Score=31.78 Aligned_cols=53 Identities=19% Similarity=0.184 Sum_probs=38.5
Q ss_pred EeeeeeCCCCCeecCeEEEEeeCCC----ceEEEEEEEcCCCCCCCeeEEEEEeccc
Q 029885 62 KTKVINSCLNPVWNEEHSLSLTEPV----GVLSLEVFDKDRFKADDKMGKAYLNLQP 114 (186)
Q Consensus 62 ~T~~~~~~~~P~w~e~~~f~v~~~~----~~l~v~v~d~~~~~~d~~lG~~~v~l~~ 114 (186)
+|+....+..-.|||.+.+.+.-.+ ..+.+++|+....+...|+|..++.+..
T Consensus 67 ~ts~~~~~~~~~wnewLtlpvky~dLt~~a~l~itiW~~n~~~~~~~vg~~t~~lf~ 123 (843)
T KOG0906|consen 67 RTSYKAFSKRINWNEWLTLPVKYSDLTRNAQLAITIWDVNGPKKAVFVGGTTVSLFG 123 (843)
T ss_pred cccccccCCccchhhhhccccccccccccceEEEEEEecCCCceeeeccceEEEeec
Confidence 4444433444569999999877543 2899999998776677899999988764
No 164
>PF01060 DUF290: Transthyretin-like family; InterPro: IPR001534 This new apparently nematode-specific protein family has been called family 2 []. The proteins show weak similarity to transthyretin (formerly called prealbumin) which transports thyroid hormones. The specific function of this protein is unknown.; GO: 0005615 extracellular space
Probab=41.81 E-value=51 Score=20.51 Aligned_cols=25 Identities=16% Similarity=0.424 Sum_probs=20.5
Q ss_pred ceEEEEEEEcCCCCCCCeeEEEEEe
Q 029885 87 GVLSLEVFDKDRFKADDKMGKAYLN 111 (186)
Q Consensus 87 ~~l~v~v~d~~~~~~d~~lG~~~v~ 111 (186)
....|++|+.+.+..|++++.+..+
T Consensus 12 ~~~~V~L~e~d~~~~Ddll~~~~Td 36 (80)
T PF01060_consen 12 KNVKVKLWEDDYFDPDDLLDETKTD 36 (80)
T ss_pred CCCEEEEEECCCCCCCceeEEEEEC
Confidence 3667999999987789999987764
No 165
>KOG2419 consensus Phosphatidylserine decarboxylase [Lipid transport and metabolism]
Probab=40.65 E-value=8.2 Score=34.11 Aligned_cols=71 Identities=13% Similarity=0.150 Sum_probs=45.8
Q ss_pred eEEEEEEEEeEcCCCCC-----CCCCCcEEEEEECCeEEEeeeeeCCCCCeecCeEEEEeeCCCc--eEEEEEEEcCCC
Q 029885 28 GQLKVTVVQGKRLVIRD-----FKSSDPYVVLKLGNQMAKTKVINSCLNPVWNEEHSLSLTEPVG--VLSLEVFDKDRF 99 (186)
Q Consensus 28 ~~L~v~i~~a~~L~~~~-----~~~~dpy~~v~~~~~~~~T~~~~~~~~P~w~e~~~f~v~~~~~--~l~v~v~d~~~~ 99 (186)
|...+.++.|.++++.- .-..++++.+.++.+.++|+....+.+|.|||. .++..+-+. .|...|-+++..
T Consensus 280 gi~ll~lI~a~~~~~i~~~~~~~f~~~~~~itsf~~~~frt~~~~~~e~piyNe~-~~E~~~Fqsn~~l~~kiv~~~~~ 357 (975)
T KOG2419|consen 280 GIALLTLIGAEMKYDIVEDVAKLFKDKWLAITSFGEQTFRTEISDDTEKPIYNED-EREDSDFQSNRYLGNKIVGYCEL 357 (975)
T ss_pred hhHHHHHhhhhcccchhhhhhhccCCCchheeecchhhhhhhhhccccccccccc-ccccccchhhHHHhhhccccccc
Confidence 33445556666654322 235679999999999999999999999999996 444443221 444444444433
No 166
>PF14909 SPATA6: Spermatogenesis-assoc protein 6
Probab=39.30 E-value=1.4e+02 Score=21.15 Aligned_cols=72 Identities=11% Similarity=0.147 Sum_probs=52.6
Q ss_pred CCCCcEEEEEECCeEEEeeeeeCCCCCeecCeEEEEeeCC-------------CceEEEEEEEcCCCCCCCeeEEEEEec
Q 029885 46 KSSDPYVVLKLGNQMAKTKVINSCLNPVWNEEHSLSLTEP-------------VGVLSLEVFDKDRFKADDKMGKAYLNL 112 (186)
Q Consensus 46 ~~~dpy~~v~~~~~~~~T~~~~~~~~P~w~e~~~f~v~~~-------------~~~l~v~v~d~~~~~~d~~lG~~~v~l 112 (186)
...|.|..+++-++-++|+....-.-=.++|.|.|+-... ...+.++++...... ...|+..+-+.
T Consensus 18 ~~~~vyL~v~~lg~~~~T~~~ppvFPllfhek~~FeK~F~~~~dp~~l~~~Le~e~~~iELiQl~~~~-g~iLA~ye~n~ 96 (140)
T PF14909_consen 18 DKGDVYLSVCILGQYKRTRCLPPVFPLLFHEKFRFEKVFPNAVDPAQLADLLEDETVYIELIQLVPPA-GEILAYYEENT 96 (140)
T ss_pred CCCCEEEEEEEcccEeecccCCCcCCeeEeeEEEeEEEecCCCCHHHHHHHhhcCcEEEEEEEEeCCC-CcEEEEEeccc
Confidence 3568999999999999998776655556789999874422 137788888876653 66888888777
Q ss_pred cccccc
Q 029885 113 QPIISA 118 (186)
Q Consensus 113 ~~l~~~ 118 (186)
.++..-
T Consensus 97 rDfLfP 102 (140)
T PF14909_consen 97 RDFLFP 102 (140)
T ss_pred cceEcC
Confidence 776543
No 167
>PF04663 Phenol_monoox: Phenol hydroxylase conserved region; InterPro: IPR006756 Under aerobic conditions, phenol is usually hydroxylated to catechol and degraded via the meta or ortho pathways. Two types of phenol hydroxylase are known: one is a multi-component enzyme the other is a single-component monooxygenase. This signature is found in both types of enzymes [, ].; PDB: 3U52_F 2INN_F 2INP_E.
Probab=34.66 E-value=14 Score=22.56 Aligned_cols=9 Identities=22% Similarity=0.659 Sum_probs=5.4
Q ss_pred Ccccccccc
Q 029885 1 MFCSFLCSE 9 (186)
Q Consensus 1 ~~~~~~~~~ 9 (186)
|||+|.|++
T Consensus 23 lFcap~~~p 31 (67)
T PF04663_consen 23 LFCAPFAFP 31 (67)
T ss_dssp TS-S-EEEE
T ss_pred eeecceeec
Confidence 788888874
No 168
>KOG4027 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.76 E-value=1.5e+02 Score=21.51 Aligned_cols=41 Identities=32% Similarity=0.428 Sum_probs=28.9
Q ss_pred eecCeEEEEeeC--CCc--eEEEEEEEcCCCCCCCeeEEEEEecc
Q 029885 73 VWNEEHSLSLTE--PVG--VLSLEVFDKDRFKADDKMGKAYLNLQ 113 (186)
Q Consensus 73 ~w~e~~~f~v~~--~~~--~l~v~v~d~~~~~~d~~lG~~~v~l~ 113 (186)
.||-.++..++. +-. .|.+.||..+.+++|-..|-..+.+-
T Consensus 65 v~n~Pievt~KstsPygWPqivl~vfg~d~~G~d~v~GYg~~hiP 109 (187)
T KOG4027|consen 65 VINLPIEVTLKSTSPYGWPQIVLNVFGKDHSGKDCVTGYGMLHIP 109 (187)
T ss_pred EEecceEEEeccCCCCCCceEEEEEecCCcCCcceeeeeeeEecC
Confidence 555444444433 222 78999999999999999988777665
No 169
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=32.30 E-value=2.8e+02 Score=22.73 Aligned_cols=88 Identities=17% Similarity=0.210 Sum_probs=58.3
Q ss_pred ceEEEEEEEEeEcCCCCC-------CCCCCcEEEEEECCeEEEeeeeeCCCCCeecC-eEE-EEeeCC----------Cc
Q 029885 27 FGQLKVTVVQGKRLVIRD-------FKSSDPYVVLKLGNQMAKTKVINSCLNPVWNE-EHS-LSLTEP----------VG 87 (186)
Q Consensus 27 ~~~L~v~i~~a~~L~~~~-------~~~~dpy~~v~~~~~~~~T~~~~~~~~P~w~e-~~~-f~v~~~----------~~ 87 (186)
.-.|.|+|..|.+|...- .+....|...++-+....|.......+|.|.- .-. +.+... ..
T Consensus 191 ~FvLsvti~~a~nL~~Lip~~l~~~~~~~~f~f~YsllGn~Vt~~~F~~l~~~~f~~er~s~vRirSS~~~L~~yf~~~~ 270 (340)
T PF12416_consen 191 LFVLSVTIKFAENLEQLIPSSLPEEQNHSGFFFYYSLLGNDVTTEPFKSLSSPSFPPERASGVRIRSSLRVLRRYFQQIP 270 (340)
T ss_pred eEEEEEehhhhhhHHhhccccccccCCCccEEEEEEecCcEeEeeeccccCCCCcCeeeeeEEeecccHHHHHHHHhhCC
Confidence 357788888888876552 12345666777767677777877878887752 222 444321 12
Q ss_pred eEEEEEEEcCCCCCCCeeEEEEEecccccccc
Q 029885 88 VLSLEVFDKDRFKADDKMGKAYLNLQPIISAA 119 (186)
Q Consensus 88 ~l~v~v~d~~~~~~d~~lG~~~v~l~~l~~~~ 119 (186)
.|.|.++. .+..||.+.+++..+....
T Consensus 271 ~L~I~Lc~-----g~~~Lg~~~v~l~~Ll~~~ 297 (340)
T PF12416_consen 271 KLQIHLCC-----GNQSLGSTSVPLQPLLPKD 297 (340)
T ss_pred CeEEEEee-----CCcEEEEEEEEhhhccCCC
Confidence 67777766 3567999999999887553
No 170
>KOG3543 consensus Ca2+-dependent activator protein [Signal transduction mechanisms]
Probab=28.05 E-value=3.4e+02 Score=24.54 Aligned_cols=79 Identities=19% Similarity=0.367 Sum_probs=52.0
Q ss_pred EEEEEEEeEcCCCCCCCCCCcEEEEEECCeEEEeeeeeCCCCCeecCeEEEEeeCCCceEEEEEEEcCCC---CCCCeeE
Q 029885 30 LKVTVVQGKRLVIRDFKSSDPYVVLKLGNQMAKTKVINSCLNPVWNEEHSLSLTEPVGVLSLEVFDKDRF---KADDKMG 106 (186)
Q Consensus 30 L~v~i~~a~~L~~~~~~~~dpy~~v~~~~~~~~T~~~~~~~~P~w~e~~~f~v~~~~~~l~v~v~d~~~~---~~d~~lG 106 (186)
+.|.|.+-.+|.... ...-.||.+.+.+.+-+|.... ...|.|..+=.|....+...+++.+|-.... -.|.-+|
T Consensus 343 mevvvmevqglksva-pnrivyctmevegeklqtdqae-askp~wgtqgdfstthplpvvkvklftestgvlaledkelg 420 (1218)
T KOG3543|consen 343 MEVVVMEVQGLKSVA-PNRIVYCTMEVEGEKLQTDQAE-ASKPKWGTQGDFSTTHPLPVVKVKLFTESTGVLALEDKELG 420 (1218)
T ss_pred eeEEEeeeccccccC-CCeeEEEEEEecccccccchhh-hcCCCCCcCCCcccCCCCceeEEEEEeecceeEEeechhhC
Confidence 456666777775543 1223699988888777776554 3479999988888887766788888875431 1344556
Q ss_pred EEEE
Q 029885 107 KAYL 110 (186)
Q Consensus 107 ~~~v 110 (186)
++.+
T Consensus 421 rvil 424 (1218)
T KOG3543|consen 421 RVIL 424 (1218)
T ss_pred eEEE
Confidence 6543
No 171
>PF14186 Aida_C2: Cytoskeletal adhesion; PDB: 2QZQ_A 2QZ5_A.
Probab=21.19 E-value=3.2e+02 Score=19.51 Aligned_cols=92 Identities=16% Similarity=0.074 Sum_probs=46.9
Q ss_pred CcceEEEEEEEEeEcCCCCCCCCCCcEEEEEECC-------eEEEeeeeeC--CCCCeecCeEEEEeeC----CCceEEE
Q 029885 25 QPFGQLKVTVVQGKRLVIRDFKSSDPYVVLKLGN-------QMAKTKVINS--CLNPVWNEEHSLSLTE----PVGVLSL 91 (186)
Q Consensus 25 ~~~~~L~v~i~~a~~L~~~~~~~~dpy~~v~~~~-------~~~~T~~~~~--~~~P~w~e~~~f~v~~----~~~~l~v 91 (186)
+....|.|.|.+.. |... ....|||+.|++-+ ..+.|.+... ...-.|+....++..- .+..+.+
T Consensus 10 ~g~t~l~v~Iekig-lkda-~~~~~P~~tVSV~D~~G~~ve~~QdTpv~~~~~~~yv~f~~~v~lqtple~lp~Gaai~f 87 (147)
T PF14186_consen 10 PGMTYLSVFIEKIG-LKDA-SQYIDPYFTVSVKDGNGKDVEPPQDTPVGSRREDNYVHFNNTVHLQTPLEKLPKGAAIFF 87 (147)
T ss_dssp TT--EEEEEEEEEE--TTG-GG-EEEEEEEEEE-TTS-BSS--EE--S-SEEETTEEEEEEEEE-SS-GGGS-TT-EEEE
T ss_pred CCCceEEEEEEEEE-ECCh-HHccCCeEEEEEECCCCCCccccccCCCcccccCCEEEEcccEEEcCCHHHCCCceEEEE
Confidence 34456777777654 5433 45678999999821 3466766532 3334455444443321 2237788
Q ss_pred EEEEcCCCCC-CCeeEEEEEeccccccc
Q 029885 92 EVFDKDRFKA-DDKMGKAYLNLQPIISA 118 (186)
Q Consensus 92 ~v~d~~~~~~-d~~lG~~~v~l~~l~~~ 118 (186)
++.++..-++ -...+-+.+.++++..+
T Consensus 88 E~kH~K~kk~k~S~kcw~fme~dei~~g 115 (147)
T PF14186_consen 88 EFKHYKPKKKKTSTKCWAFMELDEIKPG 115 (147)
T ss_dssp EEEEEETTTTCEEEEEEEEEEGGG--SE
T ss_pred EEEeeeccceeeeeeEEEEEEhhhccCC
Confidence 8888655422 23567788888887766
Done!