Query 029885
Match_columns 186
No_of_seqs 173 out of 1658
Neff 9.3
Searched_HMMs 29240
Date Mon Mar 25 07:54:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029885.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029885hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wfj_A Putative elicitor-respo 99.9 4.8E-24 1.7E-28 149.4 14.2 124 25-185 7-133 (136)
2 2dmh_A Myoferlin; beta-sandwic 99.9 5E-23 1.7E-27 144.9 15.7 125 26-185 5-136 (140)
3 2fk9_A Protein kinase C, ETA t 99.9 1.5E-23 5.2E-28 150.2 13.2 93 25-118 26-130 (157)
4 2ep6_A MCTP2 protein; beta san 99.9 1.4E-23 4.9E-28 146.5 12.5 124 23-182 8-132 (133)
5 3kwu_A MUNC13-1; calcium bindi 99.9 1.3E-22 4.5E-27 144.1 16.4 103 25-129 14-128 (148)
6 3b7y_A E3 ubiquitin-protein li 99.9 5.2E-23 1.8E-27 146.9 13.6 97 24-120 16-119 (153)
7 1rlw_A Phospholipase A2, CALB 99.9 1.1E-22 3.7E-27 140.6 12.5 101 27-128 2-110 (126)
8 1gmi_A Protein kinase C, epsil 99.9 1.2E-22 4.2E-27 142.4 12.5 119 26-184 4-135 (136)
9 3m7f_B E3 ubiquitin-protein li 99.9 2.7E-22 9.2E-27 146.5 14.1 97 25-121 5-108 (176)
10 2nq3_A Itchy homolog E3 ubiqui 99.9 2.3E-21 7.9E-26 141.3 15.6 93 25-118 33-126 (173)
11 3pyc_A E3 ubiquitin-protein li 99.9 1.5E-20 5E-25 131.0 14.5 101 27-128 4-111 (132)
12 2b3r_A Phosphatidylinositol-4- 99.9 1.1E-20 3.9E-25 132.1 12.7 104 26-130 18-131 (134)
13 3f04_A Synaptotagmin-1; C2A, c 99.8 4.9E-21 1.7E-25 135.2 10.1 105 25-129 31-142 (143)
14 1rsy_A Synaptotagmin I; calciu 99.8 1.2E-20 4.2E-25 134.5 11.7 106 25-130 39-151 (152)
15 3rdl_A Protein kinase C alpha 99.8 2.2E-20 7.5E-25 130.7 11.4 103 26-129 14-124 (137)
16 2chd_A Rabphilin-3A, exophilin 99.8 1.6E-20 5.5E-25 132.4 10.5 105 25-129 26-140 (142)
17 2z0u_A WW domain-containing pr 99.8 7.9E-21 2.7E-25 136.1 9.0 104 25-128 40-154 (155)
18 2d8k_A Synaptotagmin VII; exoc 99.8 3.9E-20 1.3E-24 130.2 11.9 106 25-130 23-136 (141)
19 3fdw_A Synaptotagmin-like prot 99.8 1.7E-20 5.9E-25 133.2 9.6 106 25-130 20-135 (148)
20 1a25_A CALB, protein kinase C 99.8 3.6E-20 1.2E-24 131.6 11.3 101 27-128 30-138 (149)
21 2bwq_A Regulating synaptic mem 99.8 3.7E-20 1.3E-24 128.3 10.5 102 25-127 15-128 (129)
22 2q3x_A Regulating synaptic mem 99.8 2.8E-20 9.7E-25 135.2 10.1 105 26-130 28-140 (171)
23 3nsj_A Perforin-1; pore formin 99.8 1.5E-19 5.2E-24 151.9 14.8 116 10-130 376-494 (540)
24 1wfm_A Synaptotagmin XIII; C2 99.8 2.6E-19 8.8E-24 125.7 13.4 103 25-130 23-133 (138)
25 3fbk_A RGS3, RGP3, regulator o 99.8 1E-19 3.5E-24 129.9 11.5 106 25-130 24-138 (153)
26 1rh8_A Piccolo protein; beta-s 99.8 1.3E-20 4.5E-25 132.7 5.8 104 27-130 17-139 (142)
27 1ugk_A Synaptotagmin IV, KIAA1 99.8 1.5E-19 5.2E-24 126.7 11.2 106 25-130 19-134 (138)
28 1v27_A Regulating synaptic mem 99.8 8.5E-20 2.9E-24 128.3 9.8 105 25-130 18-134 (141)
29 2enp_A B/K protein; C2 type 1, 99.8 6.3E-20 2.2E-24 130.0 9.0 106 25-130 23-142 (147)
30 2r83_A Synaptotagmin-1; C2A-C2 99.8 6.4E-19 2.2E-23 137.5 14.5 106 25-130 16-128 (284)
31 1tjx_A Similar to synaptotagmi 99.8 8.7E-20 3E-24 131.0 8.6 92 25-116 22-122 (159)
32 2dmg_A KIAA1228 protein; beta- 99.8 1.5E-19 5E-24 127.4 9.3 105 25-130 21-136 (142)
33 3n5a_A Synaptotagmin-7; calciu 99.8 5.2E-19 1.8E-23 123.7 11.5 101 25-127 13-122 (138)
34 3jzy_A Intersectin 2; C2 domai 99.8 9.3E-19 3.2E-23 146.8 14.6 122 25-181 384-507 (510)
35 1w15_A Synaptotagmin IV; metal 99.8 1E-18 3.5E-23 124.6 12.7 102 25-128 27-137 (153)
36 2cm5_A Rabphilin-3A; protein t 99.8 2.2E-19 7.7E-24 129.8 8.9 102 25-128 34-144 (166)
37 3l9b_A Otoferlin; C2-domain, b 99.8 1.1E-17 3.8E-22 116.2 15.2 124 23-186 16-144 (144)
38 1dqv_A Synaptotagmin III; beta 99.8 3.9E-18 1.3E-22 134.0 12.8 105 25-129 17-130 (296)
39 2cjt_A UNC-13 homolog A, MUNC1 99.8 8.1E-18 2.8E-22 117.1 11.8 88 27-119 4-92 (131)
40 2cjs_A UNC-13 homolog A, MUNC1 99.7 1.2E-16 3.9E-21 115.7 14.1 89 26-119 12-101 (167)
41 1cjy_A CPLA2, protein (cytosol 99.7 3.9E-17 1.3E-21 141.3 10.3 105 25-130 15-127 (749)
42 2r83_A Synaptotagmin-1; C2A-C2 99.7 4.6E-17 1.6E-21 126.9 8.7 92 25-116 147-247 (284)
43 1djx_A PLC-D1, phosphoinositid 99.7 8.4E-16 2.9E-20 131.5 15.1 94 26-119 495-598 (624)
44 1dqv_A Synaptotagmin III; beta 99.6 3.4E-16 1.2E-20 122.9 3.8 93 25-117 149-250 (296)
45 3bxj_A RAS GTPase-activating p 99.6 2.4E-16 8.1E-21 131.5 0.1 101 26-130 9-117 (483)
46 3pfq_A PKC-B, PKC-beta, protei 99.5 4.5E-14 1.6E-18 122.2 9.4 102 27-129 171-280 (674)
47 3qr0_A Phospholipase C-beta (P 99.4 1.2E-11 3.9E-16 108.3 15.4 88 27-121 649-747 (816)
48 1yrk_A NPKC-delta, protein kin 99.4 3E-11 1E-15 81.6 13.4 113 28-181 6-124 (126)
49 3ohm_B 1-phosphatidylinositol- 99.4 8.3E-12 2.8E-16 109.9 13.3 88 27-121 724-821 (885)
50 2zkm_X 1-phosphatidylinositol- 99.3 1.7E-11 5.9E-16 107.4 13.7 88 26-120 676-774 (799)
51 2enj_A NPKC-theta, protein kin 99.3 8.4E-11 2.9E-15 80.4 12.6 114 27-181 9-129 (138)
52 2yrb_A Protein fantom; beta sa 96.0 0.17 5.7E-06 35.4 11.0 98 20-119 10-120 (156)
53 3l4c_A Dedicator of cytokinesi 95.9 0.24 8.3E-06 36.6 12.0 97 18-114 17-139 (220)
54 2wxf_A Phosphatidylinositol-4, 93.6 0.9 3.1E-05 40.8 11.8 90 25-116 214-325 (940)
55 3hhm_A Phosphatidylinositol-4, 91.8 1.2 4.1E-05 40.5 10.1 90 26-116 353-456 (1091)
56 1e7u_A Phosphatidylinositol 3- 90.7 2.4 8.3E-05 38.1 10.9 91 26-116 216-331 (961)
57 2y3a_A Phosphatidylinositol-4, 75.9 4.5 0.00015 36.9 5.8 89 26-116 351-471 (1092)
58 3u52_E Phenol hydroxylase comp 21.7 22 0.00075 23.3 0.3 8 1-8 35-42 (119)
No 1
>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2
Probab=99.92 E-value=4.8e-24 Score=149.40 Aligned_cols=124 Identities=30% Similarity=0.414 Sum_probs=106.4
Q ss_pred CcceEEEEEEEEeEcCCCCC-CCCCCcEEEEEECCeEEEeeeee-CCCCCeecCeEEEEeeCCCceEEEEEEEcCCCCCC
Q 029885 25 QPFGQLKVTVVQGKRLVIRD-FKSSDPYVVLKLGNQMAKTKVIN-SCLNPVWNEEHSLSLTEPVGVLSLEVFDKDRFKAD 102 (186)
Q Consensus 25 ~~~~~L~v~i~~a~~L~~~~-~~~~dpy~~v~~~~~~~~T~~~~-~~~~P~w~e~~~f~v~~~~~~l~v~v~d~~~~~~d 102 (186)
.+.+.|.|+|++|++|+..+ .+.+||||+++++.++++|++++ ++.||.|||+|.|.+......|.|+|||++.+++|
T Consensus 7 ~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~l~~~V~d~~~~~~d 86 (136)
T 1wfj_A 7 GPHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEGTTELKAKIFDKDVGTED 86 (136)
T ss_dssp CCEEEEEEEEEEEEECSSCCSSCSSCCCEEEESSSCEEECCCCTTCCSSCEEEEEEEEEEESSCCEEEEEECCSSSCTTT
T ss_pred CCcEEEEEEEEeccCCCCcccCCCcCceEEEEECCccceeEeccCCCCCCccCcEEEEEECCCCCEEEEEEEECCCCCCC
Confidence 46699999999999999999 88999999999998899999998 89999999999999998656999999999999899
Q ss_pred CeeEEEEEecccccc-cceeeeEEEecCCCeeeEEEeeCCCCeecccceEEEECCEEEEEEeEEecccceecEEEEEEEE
Q 029885 103 DKMGKAYLNLQPIIS-AARLRHLVHVSSGETPLRKIIPDSENCLARESSIICINGEVVQNVWLRLCEVESGEIELKVKIV 181 (186)
Q Consensus 103 ~~lG~~~v~l~~l~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~G~l~l~l~~~ 181 (186)
++||.+.+++.++.. +.....|+.|. ......|+|+++++|.
T Consensus 87 ~~lG~~~i~l~~l~~~~~~~~~w~~L~-------------------------------------~~~~~~G~i~l~l~~~ 129 (136)
T 1wfj_A 87 DAVGEATIPLEPVFVEGSIPPTAYNVV-------------------------------------KDEEYKGEIWVALSFK 129 (136)
T ss_dssp CCSEEEEEESHHHHHHSEEEEEEEEEE-------------------------------------ETTEEEEEEEEEEEEE
T ss_pred ceEEEEEEEHHHhccCCCCCcEEEEee-------------------------------------cCCccCEEEEEEEEEE
Confidence 999999999999844 33334454442 1344689999999999
Q ss_pred eCCC
Q 029885 182 DAPS 185 (186)
Q Consensus 182 ~~~~ 185 (186)
+..+
T Consensus 130 p~~~ 133 (136)
T 1wfj_A 130 PSGP 133 (136)
T ss_dssp ECCS
T ss_pred eCCC
Confidence 8765
No 2
>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.91 E-value=5e-23 Score=144.89 Aligned_cols=125 Identities=22% Similarity=0.289 Sum_probs=106.4
Q ss_pred cceEEEEEEEEeEcCCCCCCCCCCcEEEEEECCeEEEeeeeeCCCCCeecCeEEEEeeCC----CceEEEEEEEcCCCCC
Q 029885 26 PFGQLKVTVVQGKRLVIRDFKSSDPYVVLKLGNQMAKTKVINSCLNPVWNEEHSLSLTEP----VGVLSLEVFDKDRFKA 101 (186)
Q Consensus 26 ~~~~L~v~i~~a~~L~~~~~~~~dpy~~v~~~~~~~~T~~~~~~~~P~w~e~~~f~v~~~----~~~l~v~v~d~~~~~~ 101 (186)
..+.|.|+|++|++|+..+.+.+||||++++..++++|++++++.||.|||+|.|.+..+ ...|.|+|||++.+++
T Consensus 5 ~~g~L~v~v~~a~~L~~~~~g~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~~~l~i~V~d~d~~~~ 84 (140)
T 2dmh_A 5 SSGMLRVIVESASNIPKTKFGKPDPIVSVIFKDEKKKTKKVDNELNPVWNEILEFDLRGIPLDFSSSLGIIVKDFETIGQ 84 (140)
T ss_dssp BCCEEEEEEEEEESCCCCSSSCCCEEEEEECSSCEEECCCCCSCSSCEEEEEEEEECSSCCCCTTCEEEEEEEETTCSSS
T ss_pred CCcEEEEEEEEeeCCCCCCCCCCCeEEEEEECCEeEEeeeecCCCCCccCcEEEEEecccccCCCCEEEEEEEECCCCCC
Confidence 458999999999999988777899999999999999999999999999999999999753 3499999999999999
Q ss_pred CCeeEEEEEecccccccceeeeEEE---ecCCCeeeEEEeeCCCCeecccceEEEECCEEEEEEeEEecccceecEEEEE
Q 029885 102 DDKMGKAYLNLQPIISAARLRHLVH---VSSGETPLRKIIPDSENCLARESSIICINGEVVQNVWLRLCEVESGEIELKV 178 (186)
Q Consensus 102 d~~lG~~~v~l~~l~~~~~~~~~~~---l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~G~l~l~l 178 (186)
|++||++.+++.++..+.....|+. |... -.....|+|++++
T Consensus 85 ~~~lG~~~i~l~~l~~~~~~~~w~~l~~l~~~-----------------------------------~~~~~~G~l~l~~ 129 (140)
T 2dmh_A 85 NKLIGTATVALKDLTGDQSRSLPYKLISLLNE-----------------------------------KGQDTGATIDLVI 129 (140)
T ss_dssp CCCCEEEEEEGGGTCSSSCEEEEEEEEEEECT-----------------------------------TCCEEEEEEEEEE
T ss_pred CceEEEEEEEHHHhccCCCceeEEeeeeccCC-----------------------------------CCCCCCCEEEEEE
Confidence 9999999999999988877777765 3211 0112469999999
Q ss_pred EEEeCCC
Q 029885 179 KIVDAPS 185 (186)
Q Consensus 179 ~~~~~~~ 185 (186)
+|.+.++
T Consensus 130 ~~~p~~~ 136 (140)
T 2dmh_A 130 GYDPPSG 136 (140)
T ss_dssp EECCCBS
T ss_pred EEECCCC
Confidence 9998764
No 3
>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens}
Probab=99.91 E-value=1.5e-23 Score=150.21 Aligned_cols=93 Identities=23% Similarity=0.342 Sum_probs=83.6
Q ss_pred CcceEEEEEEEEeEcCCCCC-C----------CCCCcEEEEEECCeE-EEeeeeeCCCCCeecCeEEEEeeCCCceEEEE
Q 029885 25 QPFGQLKVTVVQGKRLVIRD-F----------KSSDPYVVLKLGNQM-AKTKVINSCLNPVWNEEHSLSLTEPVGVLSLE 92 (186)
Q Consensus 25 ~~~~~L~v~i~~a~~L~~~~-~----------~~~dpy~~v~~~~~~-~~T~~~~~~~~P~w~e~~~f~v~~~~~~l~v~ 92 (186)
...|.|.|+|++|++|++++ . +.+||||++.+++++ .+|++++++.||.|||+|.|.+... ..|.|+
T Consensus 26 ~~~g~L~V~VieA~~L~~~D~~~~~~~f~~~~g~sDPYv~v~l~~~~~~kT~v~~ktlnP~WNE~F~f~v~~~-~~L~~~ 104 (157)
T 2fk9_A 26 KFNGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQVRVGQTSTKQKTNKPTYNEEFCANVTDG-GHLELA 104 (157)
T ss_dssp CEEEEEEEEEEEEECCCCCHHHHHTTTSSSSCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEEE-CEEEEE
T ss_pred cCccEEEEEEEEEECCCCccccccccccccCCCCCCeEEEEEECCEeeEEeeecCCCCCCccCcEEEEEcCCC-CEEEEE
Confidence 56799999999999999887 2 568999999998766 6999999999999999999999764 589999
Q ss_pred EEEcCCCCCCCeeEEEEEeccccccc
Q 029885 93 VFDKDRFKADDKMGKAYLNLQPIISA 118 (186)
Q Consensus 93 v~d~~~~~~d~~lG~~~v~l~~l~~~ 118 (186)
|||++.+++|++||.+.++++++..+
T Consensus 105 V~D~d~~~~dd~iG~~~i~l~~l~~~ 130 (157)
T 2fk9_A 105 VFHETPLGYDHFVANCTLQFQELLRT 130 (157)
T ss_dssp EEECCSSSSCEEEEEEEEEHHHHHHH
T ss_pred EEECCCCCCCCEEEEEEEEHHHhhcc
Confidence 99999999999999999999998755
No 4
>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1
Probab=99.91 E-value=1.4e-23 Score=146.53 Aligned_cols=124 Identities=28% Similarity=0.431 Sum_probs=106.4
Q ss_pred cCCcceEEEEEEEEeEcCCCCC-CCCCCcEEEEEECCeEEEeeeeeCCCCCeecCeEEEEeeCCCceEEEEEEEcCCCCC
Q 029885 23 MRQPFGQLKVTVVQGKRLVIRD-FKSSDPYVVLKLGNQMAKTKVINSCLNPVWNEEHSLSLTEPVGVLSLEVFDKDRFKA 101 (186)
Q Consensus 23 ~~~~~~~L~v~i~~a~~L~~~~-~~~~dpy~~v~~~~~~~~T~~~~~~~~P~w~e~~~f~v~~~~~~l~v~v~d~~~~~~ 101 (186)
.....+.|.|+|++|++|+..+ .+.+||||++.++.++++|++++++.||.|||+|.|.+......|.|+|||++.+++
T Consensus 8 ~~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~i~V~d~d~~~~ 87 (133)
T 2ep6_A 8 DVKDVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKDIHDVLEVTVFDEDGDKP 87 (133)
T ss_dssp SCCCSEEEEEEEEEEESCCCSSSSSCCCEEEEEEETTEEEECCCCSSCSSCCCCEEEEEEESCTTCEEEEEEEEEETTEE
T ss_pred ccCCceEEEEEEEeeECCCCCCCCCCcCeEEEEEECCEEEEeeeecCCCCCccccEEEEEecCCCCEEEEEEEECCCCCC
Confidence 4467799999999999999998 889999999999999999999999999999999999998876799999999999988
Q ss_pred CCeeEEEEEecccccccceeeeEEEecCCCeeeEEEeeCCCCeecccceEEEECCEEEEEEeEEecccceecEEEEEEEE
Q 029885 102 DDKMGKAYLNLQPIISAARLRHLVHVSSGETPLRKIIPDSENCLARESSIICINGEVVQNVWLRLCEVESGEIELKVKIV 181 (186)
Q Consensus 102 d~~lG~~~v~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~G~l~l~l~~~ 181 (186)
|++||++.+++.++..+. ..|+.|... ..+....|+|+++++|+
T Consensus 88 ~~~lG~~~i~l~~l~~~~--~~w~~L~~~----------------------------------~~~~~~~G~i~l~i~~~ 131 (133)
T 2ep6_A 88 PDFLGKVAIPLLSIRDGQ--PNCYVLKNK----------------------------------DLEQAFKGVIYLEMDLI 131 (133)
T ss_dssp EEECCBCEEEGGGCCSSC--CEECCCBCS----------------------------------CTTSCCSSEEEEEEEEE
T ss_pred CCeeEEEEEEHHHccCCC--ceEEEeecC----------------------------------CCCCccceEEEEEEEEE
Confidence 999999999999986643 356565533 01234679999999987
Q ss_pred e
Q 029885 182 D 182 (186)
Q Consensus 182 ~ 182 (186)
.
T Consensus 132 ~ 132 (133)
T 2ep6_A 132 Y 132 (133)
T ss_dssp E
T ss_pred e
Confidence 4
No 5
>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} SCOP: b.7.1.0 PDB: 3kwt_A*
Probab=99.90 E-value=1.3e-22 Score=144.07 Aligned_cols=103 Identities=26% Similarity=0.487 Sum_probs=91.5
Q ss_pred CcceEEEEEEEEeEcCCCCC-CCCCCcEEEEEECCeEEEeeeeeCCCCCeecCeEEEEeeCCCceEEEEEEEcCCC----
Q 029885 25 QPFGQLKVTVVQGKRLVIRD-FKSSDPYVVLKLGNQMAKTKVINSCLNPVWNEEHSLSLTEPVGVLSLEVFDKDRF---- 99 (186)
Q Consensus 25 ~~~~~L~v~i~~a~~L~~~~-~~~~dpy~~v~~~~~~~~T~~~~~~~~P~w~e~~~f~v~~~~~~l~v~v~d~~~~---- 99 (186)
...+.|.|+|++|++|+..+ .+.+||||++.++...++|++++++.||.|||+|.|.+..+...|.|+|||++..
T Consensus 14 ~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~l~~~v~d~d~~~~~~ 93 (148)
T 3kwu_A 14 KWSAKISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYGNLNPVWEENFHFECHNSSDRIKVRVLDEDDDIKSR 93 (148)
T ss_dssp -CCEEEEEEEEEEESCCCCSTTSCCCEEEEEEETTEEEECCCCCSCSSCEEEEEEEEEECSTTCEEEEEEEECCCSHHHH
T ss_pred ccccEEEEEEEeeeCCCCCCCCCCcCeEEEEEECCEEEECCccCCCCCCCcccEEEEEecCCCCEEEEEEEECCCCcccc
Confidence 44699999999999999999 8999999999999999999999999999999999999988777999999999985
Q ss_pred -------CCCCeeEEEEEecccccccceeeeEEEecC
Q 029885 100 -------KADDKMGKAYLNLQPIISAARLRHLVHVSS 129 (186)
Q Consensus 100 -------~~d~~lG~~~v~l~~l~~~~~~~~~~~l~~ 129 (186)
++|++||++.+++.++ ......|+.|..
T Consensus 94 ~~~~~~~~~~~~lG~~~i~l~~l--~~~~~~w~~L~~ 128 (148)
T 3kwu_A 94 VKQRFKRESDDFLGQTIIEVRTL--SGEMDVWYNLDK 128 (148)
T ss_dssp HHTTTSSCSSEEEEEEEEEGGGC--CSEEEEEEECBC
T ss_pred ccccccCCCCccEEEEEEEHHHC--cCCCCEEEEccc
Confidence 7899999999999998 334556666653
No 6
>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A
Probab=99.90 E-value=5.2e-23 Score=146.94 Aligned_cols=97 Identities=33% Similarity=0.527 Sum_probs=82.3
Q ss_pred CCcceEEEEEEEEeEcCCCCC-CCCCCcEEEEEECC------eEEEeeeeeCCCCCeecCeEEEEeeCCCceEEEEEEEc
Q 029885 24 RQPFGQLKVTVVQGKRLVIRD-FKSSDPYVVLKLGN------QMAKTKVINSCLNPVWNEEHSLSLTEPVGVLSLEVFDK 96 (186)
Q Consensus 24 ~~~~~~L~v~i~~a~~L~~~~-~~~~dpy~~v~~~~------~~~~T~~~~~~~~P~w~e~~~f~v~~~~~~l~v~v~d~ 96 (186)
....+.|.|+|++|++|+..+ .+.+||||++.+.. ..++|++++++.||.|||+|.|.+......|.|+|||+
T Consensus 16 ~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~l~~~V~d~ 95 (153)
T 3b7y_A 16 EENSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFRVHPQQHRLLFEVFDE 95 (153)
T ss_dssp CTTCEEEEEEEEEEESCC-------CCEEEEEEEEETTTEEEEEEECCCCSSCSSCCCCEEEEEEECTTTCEEEEEEEEC
T ss_pred CCCccEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCccceeeeCccccCCCCCCCCCEEEEEecCCCCEEEEEEEEC
Confidence 356689999999999999988 88999999999953 56899999999999999999999988766999999999
Q ss_pred CCCCCCCeeEEEEEecccccccce
Q 029885 97 DRFKADDKMGKAYLNLQPIISAAR 120 (186)
Q Consensus 97 ~~~~~d~~lG~~~v~l~~l~~~~~ 120 (186)
+.+++|++||++.+++.++..+..
T Consensus 96 d~~~~d~~iG~~~i~l~~l~~~~~ 119 (153)
T 3b7y_A 96 NRLTRDDFLGQVDVPLYPLPTENP 119 (153)
T ss_dssp CSSSCCEEEEEEEEECCSCCBCCT
T ss_pred CCCcCCCeeEEEEEEHHHcccCCC
Confidence 999899999999999999877653
No 7
>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1
Probab=99.89 E-value=1.1e-22 Score=140.61 Aligned_cols=101 Identities=23% Similarity=0.429 Sum_probs=85.9
Q ss_pred ceEEEEEEEEeEcCCCC---C-CCCCCcEEEEEECC---eEEEeeeeeCCCCCeecCeEEEEeeCCC-ceEEEEEEEcCC
Q 029885 27 FGQLKVTVVQGKRLVIR---D-FKSSDPYVVLKLGN---QMAKTKVINSCLNPVWNEEHSLSLTEPV-GVLSLEVFDKDR 98 (186)
Q Consensus 27 ~~~L~v~i~~a~~L~~~---~-~~~~dpy~~v~~~~---~~~~T~~~~~~~~P~w~e~~~f~v~~~~-~~l~v~v~d~~~ 98 (186)
.+.|.|+|++|++|+.+ + .+.+||||++.++. ..++|++++++.||.|||+|.|.+.... ..|.|+|||++.
T Consensus 2 ~~~L~v~v~~a~~L~~~~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~d~ 81 (126)
T 1rlw_A 2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANY 81 (126)
T ss_dssp CEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCEEEEEEEECCS
T ss_pred CcEEEEEEEeeeCCCCCCccccCCCCCCEEEEEEccCCCceEEccccCCCCCCcccceEEEEecCCCCCEEEEEEEECCC
Confidence 47899999999999985 4 68999999999974 6799999999999999999999996543 489999999998
Q ss_pred CCCCCeeEEEEEecccccccceeeeEEEec
Q 029885 99 FKADDKMGKAYLNLQPIISAARLRHLVHVS 128 (186)
Q Consensus 99 ~~~d~~lG~~~v~l~~l~~~~~~~~~~~l~ 128 (186)
+ +|++||.+.++|.++..+..+..|++|.
T Consensus 82 ~-~~~~iG~~~i~l~~l~~~~~~~~~~~L~ 110 (126)
T 1rlw_A 82 V-MDETLGTATFTVSSMKVGEKKEVPFIFN 110 (126)
T ss_dssp S-CCEEEEEEEEEGGGSCTTCEEEEEEEET
T ss_pred C-CCceeEEEEEEHHHccCCCcEEEEEEcC
Confidence 8 5899999999999887665554444443
No 8
>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1
Probab=99.89 E-value=1.2e-22 Score=142.36 Aligned_cols=119 Identities=17% Similarity=0.334 Sum_probs=99.9
Q ss_pred cceEEEEEEEEeEcCCCCC-CCC-----------CCcEEEEEECCeE-EEeeeeeCCCCCeecCeEEEEeeCCCceEEEE
Q 029885 26 PFGQLKVTVVQGKRLVIRD-FKS-----------SDPYVVLKLGNQM-AKTKVINSCLNPVWNEEHSLSLTEPVGVLSLE 92 (186)
Q Consensus 26 ~~~~L~v~i~~a~~L~~~~-~~~-----------~dpy~~v~~~~~~-~~T~~~~~~~~P~w~e~~~f~v~~~~~~l~v~ 92 (186)
..+.|.|+|++|++|+..+ .+. +||||++.++... .+|+++.++.||.|||+|.|.+... ..|.|+
T Consensus 4 ~~g~L~v~v~~a~~L~~~d~~~~~~~g~~~~~~~~DPyv~v~l~~~~~~~T~~~~~t~nP~WnE~f~f~v~~~-~~L~~~ 82 (136)
T 1gmi_A 4 FNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWHDEFVTDVCNG-RKIELA 82 (136)
T ss_dssp EEEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEEE-CEEEEE
T ss_pred cceEEEEEEEeCcCCCCcccccccccccccCCcCcCcEEEEEECCeEeeeeeEECCCcCCccCCEEEEEecCC-CEEEEE
Confidence 4589999999999999887 443 9999999997765 6899999999999999999999876 799999
Q ss_pred EEEcCCCCCCCeeEEEEEecccccccceeeeEEEecCCCeeeEEEeeCCCCeecccceEEEECCEEEEEEeEEeccccee
Q 029885 93 VFDKDRFKADDKMGKAYLNLQPIISAARLRHLVHVSSGETPLRKIIPDSENCLARESSIICINGEVVQNVWLRLCEVESG 172 (186)
Q Consensus 93 v~d~~~~~~d~~lG~~~v~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~G 172 (186)
|||++.+++|++||.+.+++.++..+.. ...+.|+.|+ +.|
T Consensus 83 V~d~d~~~~dd~iG~~~i~l~~l~~~~~-------------------------------------~~~~~w~~L~--~~G 123 (136)
T 1gmi_A 83 VFHDAPIGYDDFVANCTIQFEELLQNGS-------------------------------------RHFEDWIDLE--PEG 123 (136)
T ss_dssp EEECCSSSSCEEEEEEEEEHHHHTSTTC-------------------------------------SEEEEEEECB--SSC
T ss_pred EEeCCCCCCCCEEEEEEEEHHHhcccCC-------------------------------------CCccEEEEcC--CCe
Confidence 9999999899999999999998866421 1234566665 589
Q ss_pred cEEEEEEEEeCC
Q 029885 173 EIELKVKIVDAP 184 (186)
Q Consensus 173 ~l~l~l~~~~~~ 184 (186)
+|+++++|....
T Consensus 124 ~i~l~l~~~~~~ 135 (136)
T 1gmi_A 124 KVYVIIDLSGSS 135 (136)
T ss_dssp EEEEEEEEEEEE
T ss_pred EEEEEEEEEecC
Confidence 999999987643
No 9
>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus}
Probab=99.89 E-value=2.7e-22 Score=146.54 Aligned_cols=97 Identities=32% Similarity=0.511 Sum_probs=79.9
Q ss_pred CcceEEEEEEEEeEcCCCCC-CCCCCcEEEEEECC------eEEEeeeeeCCCCCeecCeEEEEeeCCCceEEEEEEEcC
Q 029885 25 QPFGQLKVTVVQGKRLVIRD-FKSSDPYVVLKLGN------QMAKTKVINSCLNPVWNEEHSLSLTEPVGVLSLEVFDKD 97 (186)
Q Consensus 25 ~~~~~L~v~i~~a~~L~~~~-~~~~dpy~~v~~~~------~~~~T~~~~~~~~P~w~e~~~f~v~~~~~~l~v~v~d~~ 97 (186)
...+.|.|+|++|++|+..+ .+.+||||++++.. ..++|++++++.||.|||+|.|.+......|.|+|||++
T Consensus 5 ~~~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~L~~~V~d~d 84 (176)
T 3m7f_B 5 DDTRVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFRVLPQRHRILFEVFDEN 84 (176)
T ss_dssp TTCEEEEEEEEEEESCC---CCCCCCEEEEEEEEETTTEEEEEEECCCCSSCSSCEEEEEEEEEECTTTCEEEEEEEECC
T ss_pred CCcEEEEEEEEEeeCCCCcCCCCCcCcEEEEEEECCCCCcccceeCceECCCCCCcccceEEEEEcCCCCEEEEEEEECC
Confidence 45689999999999999998 88999999999964 568999999999999999999999977669999999999
Q ss_pred CCCCCCeeEEEEEeccccccccee
Q 029885 98 RFKADDKMGKAYLNLQPIISAARL 121 (186)
Q Consensus 98 ~~~~d~~lG~~~v~l~~l~~~~~~ 121 (186)
.+++|++||.+.++|.++......
T Consensus 85 ~~~~d~~lG~~~i~l~~l~~~~~~ 108 (176)
T 3m7f_B 85 RLTRDDFLGQVDVPLYPLPTENPR 108 (176)
T ss_dssp ----CEEEEEEEEESCSCCBC---
T ss_pred CCCCCcEEEEEEEEHHHccccCCc
Confidence 998999999999999999876543
No 10
>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1
Probab=99.88 E-value=2.3e-21 Score=141.26 Aligned_cols=93 Identities=25% Similarity=0.400 Sum_probs=83.0
Q ss_pred CcceEEEEEEEEeEcCCCCC-CCCCCcEEEEEECCeEEEeeeeeCCCCCeecCeEEEEeeCCCceEEEEEEEcCCCCCCC
Q 029885 25 QPFGQLKVTVVQGKRLVIRD-FKSSDPYVVLKLGNQMAKTKVINSCLNPVWNEEHSLSLTEPVGVLSLEVFDKDRFKADD 103 (186)
Q Consensus 25 ~~~~~L~v~i~~a~~L~~~~-~~~~dpy~~v~~~~~~~~T~~~~~~~~P~w~e~~~f~v~~~~~~l~v~v~d~~~~~~d~ 103 (186)
...+.|.|+|++|++|+..+ .+.+||||+++++...++|++++++.||.|||+|.|.+.. ...|.|+|||++.+++|+
T Consensus 33 ~~~~~L~V~V~~A~~L~~~~~~~~sDPYv~v~~~~~~~kT~v~~~tlnP~Wne~f~f~v~~-~~~L~~~V~D~d~~~~dd 111 (173)
T 2nq3_A 33 TMKSQLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIVTP-VSKLHFRVWSHQTLKSDV 111 (173)
T ss_dssp SCCEEEEEEEEEEEECCCC--CCCCCEEEEEEETTEEEECCCCSSCSSCEEEEEEEEEECT-TCEEEEEEEECCSSSCCE
T ss_pred CCceEEEEEEEEeECCCCcccCCCCCeEEEEEECCEEeEccccCCCCCCeECCEEEEEeCC-CCEEEEEEEECCCCCCCc
Confidence 45689999999999999444 5559999999999999999999999999999999999864 569999999999998999
Q ss_pred eeEEEEEeccccccc
Q 029885 104 KMGKAYLNLQPIISA 118 (186)
Q Consensus 104 ~lG~~~v~l~~l~~~ 118 (186)
+||.+.+++.++..+
T Consensus 112 ~lG~~~i~l~~l~~~ 126 (173)
T 2nq3_A 112 LLGTAALDIYETLKS 126 (173)
T ss_dssp EEEEEEEEHHHHHHH
T ss_pred eEEEEEEEHHHhccc
Confidence 999999999998765
No 11
>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A
Probab=99.86 E-value=1.5e-20 Score=131.01 Aligned_cols=101 Identities=20% Similarity=0.385 Sum_probs=85.5
Q ss_pred ceEEEEEEEEeEcCCCCC-CCCCCcEEEEEECC--eEEEeeeeeCCCCCeecCeEEEEeeCCCceEEEEEEEcCCCCC--
Q 029885 27 FGQLKVTVVQGKRLVIRD-FKSSDPYVVLKLGN--QMAKTKVINSCLNPVWNEEHSLSLTEPVGVLSLEVFDKDRFKA-- 101 (186)
Q Consensus 27 ~~~L~v~i~~a~~L~~~~-~~~~dpy~~v~~~~--~~~~T~~~~~~~~P~w~e~~~f~v~~~~~~l~v~v~d~~~~~~-- 101 (186)
...|.|+|++|++|+..+ .+.+||||++++.. ..++|++++++.||.|||+|.|.+.... .|.|+|||++.+++
T Consensus 4 ~~~L~V~v~~a~~L~~~d~~g~sDpyv~v~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~-~l~~~v~d~d~~~~~~ 82 (132)
T 3pyc_A 4 FIKIRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQCHSTDTVKNTLDPKWNQHYDLYVGKTD-SITISVWNHKKIHKKQ 82 (132)
T ss_dssp EEEEEEEEEEEESCCCCSTTCCCCEEEEEEETTTCCEEECCCCSSCSSCEEEEEEEEEEETTC-CEEEEEEEGGGTTSST
T ss_pred eEEEEEEEEEeECCCCCCCCCCcCeEEEEEECCCCceEECCccCCCCCCCccCEEEEEeCCCC-EEEEEEEECCCCCCCC
Confidence 467999999999999999 88999999999964 7899999999999999999999998764 69999999998866
Q ss_pred -CCeeEEEEEeccccccc-ceeeeEEEec
Q 029885 102 -DDKMGKAYLNLQPIISA-ARLRHLVHVS 128 (186)
Q Consensus 102 -d~~lG~~~v~l~~l~~~-~~~~~~~~l~ 128 (186)
|++||++.++++++... .....+++|.
T Consensus 83 ~d~~lG~~~i~l~~l~~~~~~~~~~~~L~ 111 (132)
T 3pyc_A 83 GAGFLGCVRLLSNAISRLKDTGYQRLDLC 111 (132)
T ss_dssp TTTEEEEEEECHHHHHHHTTSCCEEEECB
T ss_pred CCCceEEEEEeHHHhhcccccCcEEEeee
Confidence 79999999999988332 3233444553
No 12
>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus}
Probab=99.85 E-value=1.1e-20 Score=132.07 Aligned_cols=104 Identities=23% Similarity=0.277 Sum_probs=91.0
Q ss_pred cceEEEEEEEEeEcCCCCC-CCCCCcEEEEEE-----CCeEEEeeeeeCCCCCeecCeEEEE-eeCC---CceEEEEEEE
Q 029885 26 PFGQLKVTVVQGKRLVIRD-FKSSDPYVVLKL-----GNQMAKTKVINSCLNPVWNEEHSLS-LTEP---VGVLSLEVFD 95 (186)
Q Consensus 26 ~~~~L~v~i~~a~~L~~~~-~~~~dpy~~v~~-----~~~~~~T~~~~~~~~P~w~e~~~f~-v~~~---~~~l~v~v~d 95 (186)
..+.|.|+|++|++|+. + .+.+||||++++ ...+++|++++++.||.|||+|.|. +... ...|.|+|||
T Consensus 18 ~~~~L~V~V~~a~~L~~-~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~~v~~~~l~~~~L~~~V~d 96 (134)
T 2b3r_A 18 RNGTLFIMVMHIKDLVT-EDGADPNPYVKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLVYSGYSKETLRQRELQLSVLS 96 (134)
T ss_dssp ETTEEEEEEEEEECCCC-TTSCCCCEEEEEEEESCSSSCCCEECCCCCSCSSCEEEEEEEEESCCHHHHTTCEEEEEEEE
T ss_pred cCCEEEEEEEEeeCCCC-CCCCCCCeEEEEEEEcCCCCCceecCCcCcCCCCCCCccEEEECCcCHHHhCcCEEEEEEEE
Confidence 35899999999999997 6 889999999999 3457899999999999999999999 7642 3499999999
Q ss_pred cCCCCCCCeeEEEEEecccccccceeeeEEEecCC
Q 029885 96 KDRFKADDKMGKAYLNLQPIISAARLRHLVHVSSG 130 (186)
Q Consensus 96 ~~~~~~d~~lG~~~v~l~~l~~~~~~~~~~~l~~~ 130 (186)
++.++++++||++.++|.++..+.....|++|...
T Consensus 97 ~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L~~~ 131 (134)
T 2b3r_A 97 AESLRENFFLGGITLPLKDFNLSKETVKWYQLTAA 131 (134)
T ss_dssp CCSSSCCEEEEEEEEEGGGSCTTSCEEEEEECBC-
T ss_pred CCCCCCCcEEEEEEEEhhhccCCCCcceeEECCCc
Confidence 99998999999999999999888778888888643
No 13
>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.7.1.2 PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A*
Probab=99.85 E-value=4.9e-21 Score=135.17 Aligned_cols=105 Identities=29% Similarity=0.360 Sum_probs=94.3
Q ss_pred CcceEEEEEEEEeEcCCCCC-CCCCCcEEEEEE---CCeEEEeeeeeCCCCCeecCeEEEEeeCC---CceEEEEEEEcC
Q 029885 25 QPFGQLKVTVVQGKRLVIRD-FKSSDPYVVLKL---GNQMAKTKVINSCLNPVWNEEHSLSLTEP---VGVLSLEVFDKD 97 (186)
Q Consensus 25 ~~~~~L~v~i~~a~~L~~~~-~~~~dpy~~v~~---~~~~~~T~~~~~~~~P~w~e~~~f~v~~~---~~~l~v~v~d~~ 97 (186)
...+.|.|+|++|++|+..+ .+.+|||+++++ +..+++|++++++.||.|||+|.|.+... ...|.|+|||++
T Consensus 31 ~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d 110 (143)
T 3f04_A 31 FQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFD 110 (143)
T ss_dssp TTTTEEEEEEEEEECCCCBGGGBCCCEEEEEEEESCCSCCEECCCCCSCSSCEEEEEEEECCCHHHHTTCEEEEEEEECC
T ss_pred CCCCEEEEEEEEecCCCCCCCCCCcCcEEEEEEECCCCccEECccCcCCCCCcCcCeEEEeecHhhcCCCEEEEEEEeCC
Confidence 46689999999999999988 889999999999 45579999999999999999999998743 248999999999
Q ss_pred CCCCCCeeEEEEEecccccccceeeeEEEecC
Q 029885 98 RFKADDKMGKAYLNLQPIISAARLRHLVHVSS 129 (186)
Q Consensus 98 ~~~~d~~lG~~~v~l~~l~~~~~~~~~~~l~~ 129 (186)
.+++|++||++.++|.++..+.....|++|..
T Consensus 111 ~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~ 142 (143)
T 3f04_A 111 RFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQS 142 (143)
T ss_dssp SSSCCEEEEEEEEEGGGCCTTSCEEEEEECBC
T ss_pred CCCCCceEEEEEEEHHHccCCCCcceEEECcC
Confidence 99999999999999999998888888988864
No 14
>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2
Probab=99.85 E-value=1.2e-20 Score=134.54 Aligned_cols=106 Identities=28% Similarity=0.358 Sum_probs=94.0
Q ss_pred CcceEEEEEEEEeEcCCCCC-CCCCCcEEEEEE---CCeEEEeeeeeCCCCCeecCeEEEEeeCC---CceEEEEEEEcC
Q 029885 25 QPFGQLKVTVVQGKRLVIRD-FKSSDPYVVLKL---GNQMAKTKVINSCLNPVWNEEHSLSLTEP---VGVLSLEVFDKD 97 (186)
Q Consensus 25 ~~~~~L~v~i~~a~~L~~~~-~~~~dpy~~v~~---~~~~~~T~~~~~~~~P~w~e~~~f~v~~~---~~~l~v~v~d~~ 97 (186)
+..+.|.|+|++|++|+..+ .+.+||||++++ ....++|++++++.||.|||+|.|.+... ...|.|+|||++
T Consensus 39 ~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d 118 (152)
T 1rsy_A 39 FQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFD 118 (152)
T ss_dssp TTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETTCCSCEECCCCTTCSSCEEEEEEEECCCHHHHTTCEEEEEEEECC
T ss_pred CCCCEEEEEEEEeECCCCccCCCCcCeEEEEEEEcCCCceEeccccCCCCCCcCcccEEEeecHHHcCCCEEEEEEEECC
Confidence 45689999999999999998 889999999999 34578999999999999999999988743 358999999999
Q ss_pred CCCCCCeeEEEEEecccccccceeeeEEEecCC
Q 029885 98 RFKADDKMGKAYLNLQPIISAARLRHLVHVSSG 130 (186)
Q Consensus 98 ~~~~d~~lG~~~v~l~~l~~~~~~~~~~~l~~~ 130 (186)
.++++++||++.+++.++..+...+.|++|...
T Consensus 119 ~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~~ 151 (152)
T 1rsy_A 119 RFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSA 151 (152)
T ss_dssp SSSCCEEEEEEEEEGGGCCCSSCEEEEEECBCC
T ss_pred CCCCCcEEEEEEEEchhccCCCCcceEEECCCC
Confidence 998999999999999999888888888888643
No 15
>3rdl_A Protein kinase C alpha type; protein kinase PKC, transferase; 1.50A {Rattus norvegicus} PDB: 3gpe_A 3rdj_A 3twy_A 1dsy_A* 4dnl_A* 2uzp_A*
Probab=99.84 E-value=2.2e-20 Score=130.71 Aligned_cols=103 Identities=35% Similarity=0.470 Sum_probs=90.7
Q ss_pred cceEEEEEEEEeEcCCCCC-CCCCCcEEEEEE-----CCeEEEeeeeeCCCCCeecCeEEEEeeCCC--ceEEEEEEEcC
Q 029885 26 PFGQLKVTVVQGKRLVIRD-FKSSDPYVVLKL-----GNQMAKTKVINSCLNPVWNEEHSLSLTEPV--GVLSLEVFDKD 97 (186)
Q Consensus 26 ~~~~L~v~i~~a~~L~~~~-~~~~dpy~~v~~-----~~~~~~T~~~~~~~~P~w~e~~~f~v~~~~--~~l~v~v~d~~ 97 (186)
..+.|.|+|++|++|+..+ .+.+||||++.+ ....++|++++++.||.|||+|.|.+.... ..|.|+|||++
T Consensus 14 ~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~l~i~v~d~d 93 (137)
T 3rdl_A 14 TDEKLHVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKLKPSDKDRRLSVEIWDWD 93 (137)
T ss_dssp ETTEEEEEEEEEESCCCCSTTSCCCEEEEEEEECCTTCCCCEECCCCCSCSSCEEEEEEEEECCGGGGGCEEEEEEEECC
T ss_pred cCCEEEEEEEEeeCCCCCCCCCCCCeeEEEEEEcCCCCCeeecCceEcCCCCCCcccEEEEEcCchhcCCEEEEEEEECC
Confidence 3589999999999999998 889999999999 456799999999999999999999987543 37999999999
Q ss_pred CCCCCCeeEEEEEecccccccceeeeEEEecC
Q 029885 98 RFKADDKMGKAYLNLQPIISAARLRHLVHVSS 129 (186)
Q Consensus 98 ~~~~d~~lG~~~v~l~~l~~~~~~~~~~~l~~ 129 (186)
.++++++||.+.++++++..+. ...|+.|..
T Consensus 94 ~~~~~~~iG~~~i~l~~l~~~~-~~~W~~L~~ 124 (137)
T 3rdl_A 94 RTTRNDFMGSLSFGVSELMKMP-ASGWYKLLN 124 (137)
T ss_dssp SSSCCEEEEEEEEEHHHHHHSC-EEEEEECBC
T ss_pred CCCCCceEEEEEEeHHHhccCc-cCceEECcC
Confidence 9989999999999999997765 667777654
No 16
>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A
Probab=99.84 E-value=1.6e-20 Score=132.36 Aligned_cols=105 Identities=29% Similarity=0.441 Sum_probs=93.6
Q ss_pred CcceEEEEEEEEeEcCCCCC-CCCCCcEEEEEECC-----eEEEeeeeeCCCCCeecCeEEEE-eeCCC---ceEEEEEE
Q 029885 25 QPFGQLKVTVVQGKRLVIRD-FKSSDPYVVLKLGN-----QMAKTKVINSCLNPVWNEEHSLS-LTEPV---GVLSLEVF 94 (186)
Q Consensus 25 ~~~~~L~v~i~~a~~L~~~~-~~~~dpy~~v~~~~-----~~~~T~~~~~~~~P~w~e~~~f~-v~~~~---~~l~v~v~ 94 (186)
+..+.|.|+|++|++|+..+ .+.+||||++++.. ..++|++++++.||.|||+|.|. +.... ..|.|+||
T Consensus 26 ~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~ 105 (142)
T 2chd_A 26 QDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGITEEDMQRKTLRISVC 105 (142)
T ss_dssp GGGTEEEEEEEEEESCCCCCTTSCCCEEEEEEEESCCSGGGEEECCCCCSCSSCEEEEEEEEESCCHHHHHHCEEEEEEE
T ss_pred CCCCEEEEEEEEecCCCCCCCCCCCCCEEEEEEEcCCCCcceeeCCcCCCCCCCcCcCEEEEcccCHHHccCCEEEEEEE
Confidence 45689999999999999999 88999999999954 67999999999999999999998 54322 48999999
Q ss_pred EcCCCCCCCeeEEEEEecccccccceeeeEEEecC
Q 029885 95 DKDRFKADDKMGKAYLNLQPIISAARLRHLVHVSS 129 (186)
Q Consensus 95 d~~~~~~d~~lG~~~v~l~~l~~~~~~~~~~~l~~ 129 (186)
|++.++++++||++.+++.++..+.....|+.|..
T Consensus 106 d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~ 140 (142)
T 2chd_A 106 DEDKFGHNEFIGETRFSLKKLKANQRKNFNICLER 140 (142)
T ss_dssp EECTTSCEEEEEEEEEEGGGCCTTCCEEEEEECBC
T ss_pred ECCCCCCCcEEEEEEEEHHHcCCCCccEEEEeccc
Confidence 99999899999999999999999988888888864
No 17
>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens}
Probab=99.84 E-value=7.9e-21 Score=136.09 Aligned_cols=104 Identities=16% Similarity=0.207 Sum_probs=91.0
Q ss_pred CcceEEEEEEEEeEcCCCCC-CCCCCcEEEEEECC------eEEEeeeeeCCCCCeecCeEEEEeeCC---CceEEEEEE
Q 029885 25 QPFGQLKVTVVQGKRLVIRD-FKSSDPYVVLKLGN------QMAKTKVINSCLNPVWNEEHSLSLTEP---VGVLSLEVF 94 (186)
Q Consensus 25 ~~~~~L~v~i~~a~~L~~~~-~~~~dpy~~v~~~~------~~~~T~~~~~~~~P~w~e~~~f~v~~~---~~~l~v~v~ 94 (186)
+..+.|.|.|++|++|+.++ .+.+|||+++++.. .+++|++++++.||.|||+|.|.+... ...|.|+||
T Consensus 40 ~~~~~L~V~Vi~a~~L~~~d~~g~sDPyVkv~l~~~~~~~~~~~kT~v~~~tlnP~wnE~F~f~v~~~~l~~~~L~~~V~ 119 (155)
T 2z0u_A 40 EKNKQFAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRPLDASDTLVFNEVFWVSMSYPALHQKTLRVDVC 119 (155)
T ss_dssp TTTTEEEEEEEEEECGGGTCCSCCSEEEEEEEEESCSCHHHHEEECCCEECCSSEEEEEEEEEECCHHHHHHCEEEEEEE
T ss_pred CCCCEEEEEEEEccCcCCcccCCCCCEEEEEEEecCCCCCccceeCCcCCCCCCCccccEEEEEcCHHHhCcCEEEEEEE
Confidence 55689999999999999999 89999999999954 268999999999999999999998753 248999999
Q ss_pred EcCCCCCCCeeEEEEEecccccc-cceeeeEEEec
Q 029885 95 DKDRFKADDKMGKAYLNLQPIIS-AARLRHLVHVS 128 (186)
Q Consensus 95 d~~~~~~d~~lG~~~v~l~~l~~-~~~~~~~~~l~ 128 (186)
|++.++++++||++.++|.++.. +.....|+.|.
T Consensus 120 d~d~~~~~d~iG~~~i~l~~l~~~~~~~~~W~~L~ 154 (155)
T 2z0u_A 120 TTDRSHLEECLGGAQISLAEVCRSGERSTRWYNLL 154 (155)
T ss_dssp EECTTSCEEEEEEEEEECTTSCTTCCCEEEEEEEB
T ss_pred ECCCCCCCcEEEEEEEEHHHccCCCCccccceEcc
Confidence 99999999999999999999963 55667777764
No 18
>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=3.9e-20 Score=130.23 Aligned_cols=106 Identities=26% Similarity=0.372 Sum_probs=92.9
Q ss_pred CcceEEEEEEEEeEcCCCCC-CCCCCcEEEEEEC---CeEEEeeeeeCCCCCeecCeEEEEeeC----CCceEEEEEEEc
Q 029885 25 QPFGQLKVTVVQGKRLVIRD-FKSSDPYVVLKLG---NQMAKTKVINSCLNPVWNEEHSLSLTE----PVGVLSLEVFDK 96 (186)
Q Consensus 25 ~~~~~L~v~i~~a~~L~~~~-~~~~dpy~~v~~~---~~~~~T~~~~~~~~P~w~e~~~f~v~~----~~~~l~v~v~d~ 96 (186)
+..+.|.|+|++|++|+..+ .+.+||||++++. ...++|++++++.||.|||+|.|.+.. ....|.|+|||+
T Consensus 23 ~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d~ 102 (141)
T 2d8k_A 23 FQESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKVVQRILYLQVLDY 102 (141)
T ss_dssp SSSCCEEEEEEEEESCCCCSSSSCCCEEEEEEEESCCSSEEECCCCTTCSSCCCCEEEEECSCCHHHHTTSEEEEEEEEC
T ss_pred CCCCEEEEEEEEeECCCCCCCCCCCCcEEEEEEECCCCccEeCceEcCCCCCccccEEEECccCHHHcccCEEEEEEEEC
Confidence 46789999999999999998 8899999999993 457899999999999999999998532 234899999999
Q ss_pred CCCCCCCeeEEEEEecccccccceeeeEEEecCC
Q 029885 97 DRFKADDKMGKAYLNLQPIISAARLRHLVHVSSG 130 (186)
Q Consensus 97 ~~~~~d~~lG~~~v~l~~l~~~~~~~~~~~l~~~ 130 (186)
+.++++++||++.+++.++..+.....|++|...
T Consensus 103 d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~~ 136 (141)
T 2d8k_A 103 DRFSRNDPIGEVSIPLNKVDLTQMQTFWKDLKPS 136 (141)
T ss_dssp CSSSSCEEEEEEEEETTTSCTTSCEEEEECCEEC
T ss_pred CCCCCCcEEEEEEEEhhhhcCCCCccEEEECcCC
Confidence 9998999999999999999888878888877643
No 19
>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens}
Probab=99.83 E-value=1.7e-20 Score=133.17 Aligned_cols=106 Identities=25% Similarity=0.365 Sum_probs=94.5
Q ss_pred CcceEEEEEEEEeEcCCCCC--CCCCCcEEEEEEC-----CeEEEeeeeeCCCCCeecCeEEEEeeCCC---ceEEEEEE
Q 029885 25 QPFGQLKVTVVQGKRLVIRD--FKSSDPYVVLKLG-----NQMAKTKVINSCLNPVWNEEHSLSLTEPV---GVLSLEVF 94 (186)
Q Consensus 25 ~~~~~L~v~i~~a~~L~~~~--~~~~dpy~~v~~~-----~~~~~T~~~~~~~~P~w~e~~~f~v~~~~---~~l~v~v~ 94 (186)
+..+.|.|+|++|++|+..+ .+.+||||++++. ..+++|++++++.||.|||+|.|.+.... ..|.|+||
T Consensus 20 ~~~~~L~V~v~~a~~L~~~d~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~~L~~~V~ 99 (148)
T 3fdw_A 20 QQTQSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKRDTVNPLYDETLRYEIPESLLAQRTLQFSVW 99 (148)
T ss_dssp TTTTEEEEEEEEEESCCCSBTTTTBCCEEEEEEEETCCSGGGEEECCCCSSCSSCEEEEEEEEECCSTTGGGCEEEEEEE
T ss_pred CCCCEEEEEEEEecCCCCcccCCCCCCeEEEEEEEcCCcccCccccccCCCCCCCcEeeEEEEEeChhHhCceEEEEEEE
Confidence 45689999999999999877 6889999999995 24789999999999999999999988653 27999999
Q ss_pred EcCCCCCCCeeEEEEEecccccccceeeeEEEecCC
Q 029885 95 DKDRFKADDKMGKAYLNLQPIISAARLRHLVHVSSG 130 (186)
Q Consensus 95 d~~~~~~d~~lG~~~v~l~~l~~~~~~~~~~~l~~~ 130 (186)
|++.++++++||++.++|.++..+.....|++|...
T Consensus 100 d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~~ 135 (148)
T 3fdw_A 100 HHGRFGRNTFLGEAEIQMDSWKLDKKLDHCLPLHGK 135 (148)
T ss_dssp EECGGGCEEEEEEEEEEHHHHHHHCCSEEEEECBCC
T ss_pred ECCCCcCCcEEEEEEEEcccccccCCccceEECcCc
Confidence 999998999999999999999988888899999765
No 20
>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2
Probab=99.83 E-value=3.6e-20 Score=131.63 Aligned_cols=101 Identities=36% Similarity=0.431 Sum_probs=88.1
Q ss_pred ceEEEEEEEEeEcCCCCC-CCCCCcEEEEEEC-----CeEEEeeeeeCCCCCeecCeEEEEeeCCC--ceEEEEEEEcCC
Q 029885 27 FGQLKVTVVQGKRLVIRD-FKSSDPYVVLKLG-----NQMAKTKVINSCLNPVWNEEHSLSLTEPV--GVLSLEVFDKDR 98 (186)
Q Consensus 27 ~~~L~v~i~~a~~L~~~~-~~~~dpy~~v~~~-----~~~~~T~~~~~~~~P~w~e~~~f~v~~~~--~~l~v~v~d~~~ 98 (186)
.+.|.|+|++|++|+..+ .+.+||||++++. ...++|++++++.||.|||+|.|.+...+ ..|.|+|||++.
T Consensus 30 ~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~d~ 109 (149)
T 1a25_A 30 REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWDL 109 (149)
T ss_dssp SSEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEECCSGGGGCEEEEEEEECCS
T ss_pred CCEEEEEEEEeeCCCCCCCCCCcCeEEEEEEECCCCCcceEecceeCCCCCCcCCcEEEEEeccccCCCEEEEEEEECCC
Confidence 478999999999999998 8899999999995 45789999999999999999999998642 389999999999
Q ss_pred CCCCCeeEEEEEecccccccceeeeEEEec
Q 029885 99 FKADDKMGKAYLNLQPIISAARLRHLVHVS 128 (186)
Q Consensus 99 ~~~d~~lG~~~v~l~~l~~~~~~~~~~~l~ 128 (186)
++++++||++.+++.++..+. ...|+.|.
T Consensus 110 ~~~~~~iG~~~i~l~~l~~~~-~~~W~~L~ 138 (149)
T 1a25_A 110 TSRNDFMGSLSFGISELQKAG-VDGWFKLL 138 (149)
T ss_dssp SSCCEEEEEEEEEHHHHTTCC-EEEEEECB
T ss_pred CCCCCEEEEEEEEHHHhCcCc-cCCeEEcc
Confidence 989999999999999987653 45565554
No 21
>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2
Probab=99.83 E-value=3.7e-20 Score=128.30 Aligned_cols=102 Identities=23% Similarity=0.405 Sum_probs=83.9
Q ss_pred CcceEEEEEEEEeEcCCCCC-CCCCCcEEEEEE-----CCeEEEeeeeeCCCCCeecCeEEEEeeC-C---CceEEEEEE
Q 029885 25 QPFGQLKVTVVQGKRLVIRD-FKSSDPYVVLKL-----GNQMAKTKVINSCLNPVWNEEHSLSLTE-P---VGVLSLEVF 94 (186)
Q Consensus 25 ~~~~~L~v~i~~a~~L~~~~-~~~~dpy~~v~~-----~~~~~~T~~~~~~~~P~w~e~~~f~v~~-~---~~~l~v~v~ 94 (186)
+..+.|.|+|++|++|+..+ .+.+||||++.+ +..+++|++++++.||.|||+|.|.+.. . ...|.|+||
T Consensus 15 ~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~~~V~ 94 (129)
T 2bwq_A 15 KVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLW 94 (129)
T ss_dssp TTTTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCEEEEEEEECSCCGGGGGGCEEEEEEE
T ss_pred cCCCEEEEEEEEeeCCCCCCCCCCCCCEEEEEEecCCCCCcceecccccCCCCCccccEEEEccCCHHHhcCCeEEEEEE
Confidence 45689999999999999998 888999999999 3567999999999999999999999532 2 248999999
Q ss_pred EcCCCCC--CCeeEEEEEecccccccceeeeEEEe
Q 029885 95 DKDRFKA--DDKMGKAYLNLQPIISAARLRHLVHV 127 (186)
Q Consensus 95 d~~~~~~--d~~lG~~~v~l~~l~~~~~~~~~~~l 127 (186)
|++.+++ +++||.+.+++.++.... ...|+.|
T Consensus 95 d~d~~~~~~~~~lG~~~i~l~~l~~~~-~~~W~~L 128 (129)
T 2bwq_A 95 DQARVREEESEFLGEILIELETALLDD-EPHWYKL 128 (129)
T ss_dssp EC-------CEEEEEEEEEGGGCCCSS-CEEEEEC
T ss_pred ECCcCcCcCCceeEEEEEEccccCCCc-CCccEEC
Confidence 9999876 899999999999987654 6677766
No 22
>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus}
Probab=99.83 E-value=2.8e-20 Score=135.25 Aligned_cols=105 Identities=22% Similarity=0.294 Sum_probs=94.0
Q ss_pred cceEEEEEEEEeEcCCCCC--CCCCCcEEEEEECC-----eEEEeeeeeCCCCCeecCeEEEEeeCCCceEEEEEE-EcC
Q 029885 26 PFGQLKVTVVQGKRLVIRD--FKSSDPYVVLKLGN-----QMAKTKVINSCLNPVWNEEHSLSLTEPVGVLSLEVF-DKD 97 (186)
Q Consensus 26 ~~~~L~v~i~~a~~L~~~~--~~~~dpy~~v~~~~-----~~~~T~~~~~~~~P~w~e~~~f~v~~~~~~l~v~v~-d~~ 97 (186)
..+.|.|+|++|++|+.++ .+.+||||++++.. ..++|++++++.||.|||+|.|.+......|.|+|| |++
T Consensus 28 ~~~~L~V~v~~a~~L~~~d~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~L~~~V~~d~d 107 (171)
T 2q3x_A 28 KKGQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLVFDESPQGKVLQVIVWGDYG 107 (171)
T ss_dssp ETTEEEEEEEEEESCCCCC---CCCEEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEECSSCCTTEEEEEEEEEECS
T ss_pred CCCEEEEEEEEeeCCCCCCcCCCCCCceEEEEEECCCccccceeCccCCCCCCCCCCcEEEEEecCCCCEEEEEEEEcCC
Confidence 4689999999999999988 58999999999843 378999999999999999999998766569999999 999
Q ss_pred CCCCCCeeEEEEEecccccccceeeeEEEecCC
Q 029885 98 RFKADDKMGKAYLNLQPIISAARLRHLVHVSSG 130 (186)
Q Consensus 98 ~~~~d~~lG~~~v~l~~l~~~~~~~~~~~l~~~ 130 (186)
.+++|++||.+.++|.++..+.....|++|...
T Consensus 108 ~~~~d~~iG~~~i~l~~l~~~~~~~~W~~L~~~ 140 (171)
T 2q3x_A 108 RMDHKCFMGVAQILLEELDLSSMVIGWYKLFPP 140 (171)
T ss_dssp TTCSSEEEEEEEECGGGSCTTSCEEEEEECBCG
T ss_pred CCCCCCEEEEEEEEHHHcccCCCcceeEECCCc
Confidence 998999999999999999988888999999865
No 23
>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus}
Probab=99.82 E-value=1.5e-19 Score=151.90 Aligned_cols=116 Identities=22% Similarity=0.308 Sum_probs=103.1
Q ss_pred cccceeeeccccccCCcceEEEEEEEEeEcCCCCC-CCCCCcEEEEEECCeEEEeeeeeCCCCCeecCeEEEEeeC--CC
Q 029885 10 CQVLKAIHLRNCIMRQPFGQLKVTVVQGKRLVIRD-FKSSDPYVVLKLGNQMAKTKVINSCLNPVWNEEHSLSLTE--PV 86 (186)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~L~v~i~~a~~L~~~~-~~~~dpy~~v~~~~~~~~T~~~~~~~~P~w~e~~~f~v~~--~~ 86 (186)
|........++|+.....+.|.|.|++|++|+. + .+.+|||+++.++.+.++|+++++++||.|||+|.|.+.. ..
T Consensus 376 C~~~~~t~~~~C~~~~~~~~L~V~V~~A~~L~~-D~~g~sDPYV~v~l~~~~~kTkvik~tlNP~Wne~f~f~~~~~~~~ 454 (540)
T 3nsj_A 376 CQDSKVTNQDCCPRQRGLAHLVVSNFRAEHLWG-DYTTATDAYLKVFFGGQEFRTGVVWNNNNPRWTDKMDFENVLLSTG 454 (540)
T ss_dssp ESCTTTBCGGGCBSSTTEEEEEEEEEEEESCCC-SSCSCCCEEEEEEETTEEEECCCBCSCSSCBCCCCEEEEEEETTTC
T ss_pred CCCCCCcccccccccCcccEEEEEEEEccCCCc-ccCCCcCeEEEEEECCEeeeeeeecCCCCCCCCeEEEEEEecCCCC
Confidence 556666888899999889999999999999998 8 8899999999999989999999999999999999998643 44
Q ss_pred ceEEEEEEEcCCCCCCCeeEEEEEecccccccceeeeEEEecCC
Q 029885 87 GVLSLEVFDKDRFKADDKMGKAYLNLQPIISAARLRHLVHVSSG 130 (186)
Q Consensus 87 ~~l~v~v~d~~~~~~d~~lG~~~v~l~~l~~~~~~~~~~~l~~~ 130 (186)
..|.|+|||+|..++||+||.+.++|.. +.++.|+.|..|
T Consensus 455 ~~L~~~V~D~D~~~~dD~LG~~~~~L~~----g~~~~~~~l~~G 494 (540)
T 3nsj_A 455 GPLRVQVWDADYGWDDDLLGSCDRSPHS----GFHEVTCELNHG 494 (540)
T ss_dssp CCEEEEEEECCSSSCCEEEEEEEECCCS----EEEEEEEECSSS
T ss_pred CEEEEEEEECCCCCCCCEEEEEEEEeeC----CcEEEEEEcCCe
Confidence 5899999999999899999999999983 456788888877
No 24
>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2
Probab=99.82 E-value=2.6e-19 Score=125.72 Aligned_cols=103 Identities=21% Similarity=0.220 Sum_probs=88.6
Q ss_pred CcceEEEEEEEEeEcCCCCC-CCCCCcEEEEEEC---C-eEEEeeeeeCCCCCeecCeEEEEeeCCC---ceEEEEEEEc
Q 029885 25 QPFGQLKVTVVQGKRLVIRD-FKSSDPYVVLKLG---N-QMAKTKVINSCLNPVWNEEHSLSLTEPV---GVLSLEVFDK 96 (186)
Q Consensus 25 ~~~~~L~v~i~~a~~L~~~~-~~~~dpy~~v~~~---~-~~~~T~~~~~~~~P~w~e~~~f~v~~~~---~~l~v~v~d~ 96 (186)
...+.|.|+|++|++ ++ .+.+||||++.+. . .+++|++++++.||.|||+|.|.+...+ ..|.|+|||+
T Consensus 23 ~~~~~L~V~v~~a~~---~d~~g~sDPyv~v~l~~~~~~~~~kT~v~~~tlnP~wnE~f~f~v~~~~l~~~~L~~~V~d~ 99 (138)
T 1wfm_A 23 CQKAELFVTRLEAVT---SNHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEELPTATLTLTLRTC 99 (138)
T ss_dssp TTTTEEEEEEEEEEC---CCCSSCCCEEEEEEEEETTEEEEEECCCCCCCSSEECSSCEEEECCTTSSTTCEEEEEEEEC
T ss_pred CCCCEEEEEEEEEEc---CCCCCCcceEEEEEEEcCCCcccEecccCcCCCCCcCCceEEEEecHHHcCCCEEEEEEEEC
Confidence 456899999999993 55 7899999999993 2 3589999999999999999999987642 3899999999
Q ss_pred CCCCCCCeeEEEEEecccccccceeeeEEEecCC
Q 029885 97 DRFKADDKMGKAYLNLQPIISAARLRHLVHVSSG 130 (186)
Q Consensus 97 ~~~~~d~~lG~~~v~l~~l~~~~~~~~~~~l~~~ 130 (186)
+.+++|++||++.++|.++..+.....|+.|...
T Consensus 100 d~~~~dd~lG~~~i~l~~l~~~~~~~~W~~L~~~ 133 (138)
T 1wfm_A 100 DRFSRHSVAGELRLGLDGTSVPLGAAQWGELKTS 133 (138)
T ss_dssp CSSCTTSCSEEEEEESSSSSSCTTCCEEEECCCC
T ss_pred CCCCCCcEEEEEEEEcccccCcccccceeeCcCC
Confidence 9999999999999999999766677788888754
No 25
>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} SCOP: b.7.1.0
Probab=99.82 E-value=1e-19 Score=129.91 Aligned_cols=106 Identities=16% Similarity=0.315 Sum_probs=90.5
Q ss_pred CcceEEEEEEEEeEcCCCCCCCCCCcEEEEEEC-----CeEEEeeeeeCCCCCeecCeEEEEee--CCCceEEEEEEEcC
Q 029885 25 QPFGQLKVTVVQGKRLVIRDFKSSDPYVVLKLG-----NQMAKTKVINSCLNPVWNEEHSLSLT--EPVGVLSLEVFDKD 97 (186)
Q Consensus 25 ~~~~~L~v~i~~a~~L~~~~~~~~dpy~~v~~~-----~~~~~T~~~~~~~~P~w~e~~~f~v~--~~~~~l~v~v~d~~ 97 (186)
+..+.|.|+|++|++|+..+.+.+||||++.+. ..+++|++++++.||.|||+|.|.+. .....|.|+|||++
T Consensus 24 ~~~~~L~V~v~~a~~L~~~d~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~d 103 (153)
T 3fbk_A 24 AQDRVLLLHIIEGKGLISKQPGTCDPYVKISLIPEDSRLRHQKTQTVPDCRDPAFHEHFFFPVQEEDDQKRLLVTVWNRA 103 (153)
T ss_dssp ESSSEEEEEEEEEESCCCCSSSCCCEEEEEEEESCSCCTTCEECCCCTTCSSCEEEEEEEEECCGGGTTSEEEEEEEECC
T ss_pred CCCCEEEEEEEEeeCCCCCCCCCCCEEEEEEEEcCCCCccEEeccccCCCCCCccccEEEEecccHHhCCEEEEEEEeCC
Confidence 456899999999999998887889999999992 35689999999999999999999984 33347999999999
Q ss_pred CCCC-CCeeEEEEEecccccc-cceeeeEEEecCC
Q 029885 98 RFKA-DDKMGKAYLNLQPIIS-AARLRHLVHVSSG 130 (186)
Q Consensus 98 ~~~~-d~~lG~~~v~l~~l~~-~~~~~~~~~l~~~ 130 (186)
.+++ |++||++.+++.++.. +.....|+.|...
T Consensus 104 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~W~~L~~~ 138 (153)
T 3fbk_A 104 SQSRQSGLIGCMSFGVKSLLTPDKEISGWYYLLGE 138 (153)
T ss_dssp SSGGGCEEEEEEEEEHHHHTC--CCEEEEEECBCT
T ss_pred CCCCCCcEEEEEEEEHHHhcCCCCccccEEECCCh
Confidence 9876 8999999999999985 6667778777654
No 26
>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2
Probab=99.81 E-value=1.3e-20 Score=132.75 Aligned_cols=104 Identities=27% Similarity=0.442 Sum_probs=91.5
Q ss_pred ceEEEEEEEEeEcCCCCC-CCCCCcEEEEEECCe--------------EEEeeeeeCCCCCeecCeEEEE-eeC---CCc
Q 029885 27 FGQLKVTVVQGKRLVIRD-FKSSDPYVVLKLGNQ--------------MAKTKVINSCLNPVWNEEHSLS-LTE---PVG 87 (186)
Q Consensus 27 ~~~L~v~i~~a~~L~~~~-~~~~dpy~~v~~~~~--------------~~~T~~~~~~~~P~w~e~~~f~-v~~---~~~ 87 (186)
.+.|.|+|++|++|+..+ .+.+||||++++... +++|++++++.||.|||+|.|. +.. ...
T Consensus 17 ~~~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~v~~~~l~~~ 96 (142)
T 1rh8_A 17 LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKK 96 (142)
T ss_dssp TTEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEEEEEECSCCHHHHTTC
T ss_pred CCEEEEEEEEecCCCCCCCCCCCCceEEEEEecCCCcccccccccccceeeccccCCCCCCCCCCEEEECCcCHHHccCC
Confidence 578999999999999999 889999999999652 4789999999999999999997 543 234
Q ss_pred eEEEEEEEcCCCCCCCeeEEEEEecccccccceeeeEEEecCC
Q 029885 88 VLSLEVFDKDRFKADDKMGKAYLNLQPIISAARLRHLVHVSSG 130 (186)
Q Consensus 88 ~l~v~v~d~~~~~~d~~lG~~~v~l~~l~~~~~~~~~~~l~~~ 130 (186)
.|.|+|||++.++++++||.+.+++.++........|++|...
T Consensus 97 ~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L~~~ 139 (142)
T 1rh8_A 97 TLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPRWYPLKEQ 139 (142)
T ss_dssp EEEEEEEEECSSSCEEEEEEEEEETTSCGGGTTCCEEEECBCC
T ss_pred EEEEEEEECCCCCCCceEEEEEEeccccccCCCCCeEEECCcc
Confidence 9999999999998999999999999999887777888888754
No 27
>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2
Probab=99.81 E-value=1.5e-19 Score=126.74 Aligned_cols=106 Identities=23% Similarity=0.358 Sum_probs=89.9
Q ss_pred CcceEEEEEEEEeEcCCCCC-C-CCCCcEEEEEEC---CeEEEeeeeeCCCCCeecCeEEEE-eeCCC---ceEEEEEEE
Q 029885 25 QPFGQLKVTVVQGKRLVIRD-F-KSSDPYVVLKLG---NQMAKTKVINSCLNPVWNEEHSLS-LTEPV---GVLSLEVFD 95 (186)
Q Consensus 25 ~~~~~L~v~i~~a~~L~~~~-~-~~~dpy~~v~~~---~~~~~T~~~~~~~~P~w~e~~~f~-v~~~~---~~l~v~v~d 95 (186)
+..+.|.|+|++|++|+..+ . +.+||||++++. ...++|++++++.||.|||+|.|. +.... ..|.|+|||
T Consensus 19 ~~~~~L~v~v~~a~~L~~~d~~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d 98 (138)
T 1ugk_A 19 FERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTILS 98 (138)
T ss_dssp GGGTEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTTCSEEECCCCSSCSSCEEEEEEEEECCCSTTGGGCEEEEEEEE
T ss_pred CCCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEecCCCceEecCcCcCCCCCcEeeEEEEcCcCHHHhccCEEEEEEEE
Confidence 45689999999999999988 5 889999999994 368999999999999999999996 65432 389999999
Q ss_pred cCCCCCCCeeEEEEEecccccccce-eeeEEEecCC
Q 029885 96 KDRFKADDKMGKAYLNLQPIISAAR-LRHLVHVSSG 130 (186)
Q Consensus 96 ~~~~~~d~~lG~~~v~l~~l~~~~~-~~~~~~l~~~ 130 (186)
++.+++|++||++.++|.++..+.. ...|+.|..+
T Consensus 99 ~d~~~~~~~lG~~~i~l~~l~~~~~~~~~~~~l~~~ 134 (138)
T 1ugk_A 99 FDRFSRDDIIGEVLIPLSGIELSEGKMLMNREIISG 134 (138)
T ss_dssp ECSSCCCCCCEEEEEECTTCCCTTCCEEEEEECBSS
T ss_pred CCCCCCCcEEEEEEEehhHccCCCCcchhhhhhhcC
Confidence 9999999999999999999977543 4566676644
No 28
>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2
Probab=99.81 E-value=8.5e-20 Score=128.30 Aligned_cols=105 Identities=22% Similarity=0.394 Sum_probs=89.8
Q ss_pred CcceEEEEEEEEeEcCCCCC-CCCCCcEEEEEE-----CCeEEEeeeeeCCCCCeecCeEEEEe-eCC---CceEEEEEE
Q 029885 25 QPFGQLKVTVVQGKRLVIRD-FKSSDPYVVLKL-----GNQMAKTKVINSCLNPVWNEEHSLSL-TEP---VGVLSLEVF 94 (186)
Q Consensus 25 ~~~~~L~v~i~~a~~L~~~~-~~~~dpy~~v~~-----~~~~~~T~~~~~~~~P~w~e~~~f~v-~~~---~~~l~v~v~ 94 (186)
+..+.|.|+|++|++|+..+ .+.+||||++++ ....++|++++++.||.|||+|.|.+ ... ...|.|+||
T Consensus 18 ~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~ 97 (141)
T 1v27_A 18 KVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLW 97 (141)
T ss_dssp TTTTEEEEEEEEEESCCCCSSSCCCCEEEECCCSSCCSSSSCCBCCCCSSCSSCCCCCCCEECSCCTTGGGTCEEEEEEE
T ss_pred CCCCEEEEEEEEccCCCCcCCCCCCCCEEEEEEecCCCCCcceeCccccCCCCCccccEEEEccCCHHHhcCCEEEEEEE
Confidence 45689999999999999998 889999999998 34678999999999999999999995 322 248999999
Q ss_pred EcCCCCC--CCeeEEEEEecccccccceeeeEEEecCC
Q 029885 95 DKDRFKA--DDKMGKAYLNLQPIISAARLRHLVHVSSG 130 (186)
Q Consensus 95 d~~~~~~--d~~lG~~~v~l~~l~~~~~~~~~~~l~~~ 130 (186)
|++.+++ +++||.+.+++.++.... ...|++|...
T Consensus 98 d~d~~~~~~~~~lG~~~i~l~~l~~~~-~~~W~~L~~~ 134 (141)
T 1v27_A 98 DQARVREEESEFLGEILIELETALLDD-EPHWYKLQTH 134 (141)
T ss_dssp EBCSSSSCCBCCCEEEEEEGGGCCCSS-EEEEEECBCC
T ss_pred ECCCCcCCCCceEEEEEEEccccCCCC-CCceEECccc
Confidence 9999876 899999999999987654 6677777654
No 29
>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=6.3e-20 Score=130.04 Aligned_cols=106 Identities=22% Similarity=0.242 Sum_probs=91.5
Q ss_pred CcceEEEEEEEEeEcCCCC-C-------CCCCCcEEEEEEC---CeEEEeeeeeCCCCCeecCeEEEEeeCC---CceEE
Q 029885 25 QPFGQLKVTVVQGKRLVIR-D-------FKSSDPYVVLKLG---NQMAKTKVINSCLNPVWNEEHSLSLTEP---VGVLS 90 (186)
Q Consensus 25 ~~~~~L~v~i~~a~~L~~~-~-------~~~~dpy~~v~~~---~~~~~T~~~~~~~~P~w~e~~~f~v~~~---~~~l~ 90 (186)
+..+.|.|+|++|++|+.. + .+.+||||++++. ..+++|++++++.||.|||+|.|.+... ...|.
T Consensus 23 ~~~~~L~V~v~~a~~L~~~~d~~g~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~ 102 (147)
T 2enp_A 23 LLHNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTGVKRKTQKPVFEERYTFEIPFLEAQRRTLL 102 (147)
T ss_dssp TTTTEEEEEEEEEECCCCSCSSCCSSCTTCCCCCEEEEEEETCCSSCEECCCCCSCSSCCCCBCCEECCCHHHHHHSEEE
T ss_pred CCCCEEEEEEEEEeCCCCccccccccccCCCCCcEEEEEEEeCCCcceEeecccCCCCCeEeeeEEEEeChHHhccCEEE
Confidence 5568999999999999984 3 3579999999995 3578999999999999999999998753 23899
Q ss_pred EEEEEcCCCCCCCeeEEEEEecccccccceeeeEEEecCC
Q 029885 91 LEVFDKDRFKADDKMGKAYLNLQPIISAARLRHLVHVSSG 130 (186)
Q Consensus 91 v~v~d~~~~~~d~~lG~~~v~l~~l~~~~~~~~~~~l~~~ 130 (186)
|+|||++.++++++||++.++|.++........|+.|...
T Consensus 103 ~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~ 142 (147)
T 2enp_A 103 LTVVDFDKFSRHCVIGKVSVPLCEVDLVKGGHWWKALIPS 142 (147)
T ss_dssp EEEECCSTTCCSCCCEEEEEETTTSCTTTCCCEEECCBCC
T ss_pred EEEEECCCCcCCcEEEEEEEechhcCCCCCccEEEEeecC
Confidence 9999999998999999999999999887777888887754
No 30
>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2
Probab=99.81 E-value=6.4e-19 Score=137.45 Aligned_cols=106 Identities=28% Similarity=0.348 Sum_probs=94.6
Q ss_pred CcceEEEEEEEEeEcCCCCC-CCCCCcEEEEEEC---CeEEEeeeeeCCCCCeecCeEEEEeeCC---CceEEEEEEEcC
Q 029885 25 QPFGQLKVTVVQGKRLVIRD-FKSSDPYVVLKLG---NQMAKTKVINSCLNPVWNEEHSLSLTEP---VGVLSLEVFDKD 97 (186)
Q Consensus 25 ~~~~~L~v~i~~a~~L~~~~-~~~~dpy~~v~~~---~~~~~T~~~~~~~~P~w~e~~~f~v~~~---~~~l~v~v~d~~ 97 (186)
...+.|.|+|++|++|+.++ .+.+||||++.+. ...++|++++++.||.|||+|.|.+... ...|.|+|||++
T Consensus 16 ~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~wne~f~f~v~~~~~~~~~l~~~V~d~d 95 (284)
T 2r83_A 16 FQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELAGKTLVMAVYDFD 95 (284)
T ss_dssp TTTTEEEEEEEEEECCCCCSSSSSCCEEEEEEEETCTTSCEECCCCCSCSSCEEEEEEEECCCGGGCTTCEEEEEEEECC
T ss_pred CCCCEEEEEEEEeeCCCCCCCCCCCCeEEEEEEEcCCCceEeCCcccCCCCCeeCceEEEEechHHhCcCEEEEEEEECC
Confidence 45689999999999999998 8899999999994 3468999999999999999999998753 248999999999
Q ss_pred CCCCCCeeEEEEEecccccccceeeeEEEecCC
Q 029885 98 RFKADDKMGKAYLNLQPIISAARLRHLVHVSSG 130 (186)
Q Consensus 98 ~~~~d~~lG~~~v~l~~l~~~~~~~~~~~l~~~ 130 (186)
.++++++||++.++|.++..+.....|+.|...
T Consensus 96 ~~~~~~~lG~~~i~l~~l~~~~~~~~w~~L~~~ 128 (284)
T 2r83_A 96 RFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSA 128 (284)
T ss_dssp SSSCCCEEEEEEEEGGGCCCSSCEEEEEECBCC
T ss_pred CCCCCceeEEEEEcchhcccCCcceeEEEeecc
Confidence 998999999999999999988888899988654
No 31
>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A*
Probab=99.81 E-value=8.7e-20 Score=131.01 Aligned_cols=92 Identities=28% Similarity=0.421 Sum_probs=81.7
Q ss_pred CcceEEEEEEEEeEcCCCCC-CCCCCcEEEEEECC-----eEEEeeeeeCCCCCeecCeEEEEeeCCC---ceEEEEEEE
Q 029885 25 QPFGQLKVTVVQGKRLVIRD-FKSSDPYVVLKLGN-----QMAKTKVINSCLNPVWNEEHSLSLTEPV---GVLSLEVFD 95 (186)
Q Consensus 25 ~~~~~L~v~i~~a~~L~~~~-~~~~dpy~~v~~~~-----~~~~T~~~~~~~~P~w~e~~~f~v~~~~---~~l~v~v~d 95 (186)
+..+.|.|+|++|++|+..+ .+.+||||++++.. ..++|++++++.||.|||+|.|.+.... ..|.|+|||
T Consensus 22 ~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d 101 (159)
T 1tjx_A 22 PTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLD 101 (159)
T ss_dssp TTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEE
T ss_pred CCCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCceeceeeCceecCCCCCcccceEEEEcCHHHhCCcEEEEEEEE
Confidence 45689999999999999999 88999999999842 4689999999999999999999987542 379999999
Q ss_pred cCCCCCCCeeEEEEEeccccc
Q 029885 96 KDRFKADDKMGKAYLNLQPII 116 (186)
Q Consensus 96 ~~~~~~d~~lG~~~v~l~~l~ 116 (186)
++.++++++||.+.+++..+.
T Consensus 102 ~d~~~~~~~iG~~~i~l~~~~ 122 (159)
T 1tjx_A 102 YDKIGKNDAIGKVFVGYNSTG 122 (159)
T ss_dssp CCSSSCCEEEEEEEEETTCCH
T ss_pred CCCCCCCceEEEEEECCCCCC
Confidence 999989999999999999753
No 32
>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=1.5e-19 Score=127.38 Aligned_cols=105 Identities=25% Similarity=0.304 Sum_probs=90.0
Q ss_pred CcceEEEEEEEEeEcCCCCC-CCCCCcEEEEEECC-----eEEEeeeeeCCCCCeecCeEEEEeeCC---CceEEEEEEE
Q 029885 25 QPFGQLKVTVVQGKRLVIRD-FKSSDPYVVLKLGN-----QMAKTKVINSCLNPVWNEEHSLSLTEP---VGVLSLEVFD 95 (186)
Q Consensus 25 ~~~~~L~v~i~~a~~L~~~~-~~~~dpy~~v~~~~-----~~~~T~~~~~~~~P~w~e~~~f~v~~~---~~~l~v~v~d 95 (186)
+..+.|.|+|++|++|+..+ .+ +||||++++.. .+++|++++++.||.|||+|.|.+... ...|.|+|||
T Consensus 21 ~~~~~L~v~v~~a~~L~~~d~~g-~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d 99 (142)
T 2dmg_A 21 SQRNKLIVVVHACRNLIAFSEDG-SDPYVRMYLLPDKRRSGRRKTHVSKKTLNPVFDQSFDFSVSLPEVQRRTLDVAVKN 99 (142)
T ss_dssp TTTTEEEEEEEEEECCCCSSTTC-CCEEEEEEEESCCCSSSCEECCCCCSCSSCEEEEEEEECCCHHHHHHCEEEEEEEE
T ss_pred CCCCEEEEEEEEeECCCCCCCCC-CCeeEEEEEEcCCCCCCcccCCccCCCCCCCcCceEEEEecHHHhCcCEEEEEEEE
Confidence 45689999999999999998 77 99999999932 568999999999999999999998643 2389999999
Q ss_pred cCCCCC--CCeeEEEEEecccccccceeeeEEEecCC
Q 029885 96 KDRFKA--DDKMGKAYLNLQPIISAARLRHLVHVSSG 130 (186)
Q Consensus 96 ~~~~~~--d~~lG~~~v~l~~l~~~~~~~~~~~l~~~ 130 (186)
++.++. +++||++.+++.++..+.....|+.|...
T Consensus 100 ~d~~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~L~~~ 136 (142)
T 2dmg_A 100 SGGFLSKDKGLLGKVLVALASEELAKGWTQWYDLTED 136 (142)
T ss_dssp CCCSSCCSCCCCEEEEEECCCSTTTTCBCCBCCCBCS
T ss_pred CCCccccCCcEEEEEEEecccccccccccceeeccCC
Confidence 998753 57999999999999877777788888654
No 33
>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus}
Probab=99.80 E-value=5.2e-19 Score=123.73 Aligned_cols=101 Identities=26% Similarity=0.424 Sum_probs=86.2
Q ss_pred CcceEEEEEEEEeEcCCCCC-CCCCCcEEEEEECC-----eEEEeeeeeCCCCCeecCeEEEEeeCCC---ceEEEEEEE
Q 029885 25 QPFGQLKVTVVQGKRLVIRD-FKSSDPYVVLKLGN-----QMAKTKVINSCLNPVWNEEHSLSLTEPV---GVLSLEVFD 95 (186)
Q Consensus 25 ~~~~~L~v~i~~a~~L~~~~-~~~~dpy~~v~~~~-----~~~~T~~~~~~~~P~w~e~~~f~v~~~~---~~l~v~v~d 95 (186)
+..+.|.|+|++|++|+..+ .+.+|||+++++.. .+++|++++++.||.|||+|.|.+.... ..|.|+|||
T Consensus 13 ~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~~~V~d 92 (138)
T 3n5a_A 13 PSANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAFDIPTEKLRETTIIITVMD 92 (138)
T ss_dssp TTTTEEEEEEEEEESCCCCBTTTBCCEEEEEEEEETTEEEEEEECCCCSSCSSCEEEEEEEEECCGGGGGGEEEEEEEEE
T ss_pred CCCCeEEEEEEEeeCCCCcCCCCCcCeEEEEEEEeCCCccceEeCccccCCCCCcCcceEEEECChhhcCceEEEEEEEE
Confidence 45689999999999999998 88999999999953 4689999999999999999999987654 389999999
Q ss_pred cCCCCCCCeeEEEEEecccccccceeeeEEEe
Q 029885 96 KDRFKADDKMGKAYLNLQPIISAARLRHLVHV 127 (186)
Q Consensus 96 ~~~~~~d~~lG~~~v~l~~l~~~~~~~~~~~l 127 (186)
++.+++|++||.+.+++.++..+ ...|+.|
T Consensus 93 ~~~~~~~~~lG~~~i~l~~~~~~--~~~W~~l 122 (138)
T 3n5a_A 93 KDKLSRNDVIGKIYLSWKSGPGE--VKHWKDM 122 (138)
T ss_dssp CCSSSCCEEEEEEEESSSSCHHH--HHHHHHH
T ss_pred CCCCCCCcEEEEEEEccccCChH--HHHHHHH
Confidence 99998999999999999975433 3345444
No 34
>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B
Probab=99.80 E-value=9.3e-19 Score=146.77 Aligned_cols=122 Identities=28% Similarity=0.469 Sum_probs=103.1
Q ss_pred CcceEEEEEEEEeEcCCCCC-CCCCCcEEEEEECCeEEEeeeeeCCCCCeecCeEEEEeeCCCc-eEEEEEEEcCCCCCC
Q 029885 25 QPFGQLKVTVVQGKRLVIRD-FKSSDPYVVLKLGNQMAKTKVINSCLNPVWNEEHSLSLTEPVG-VLSLEVFDKDRFKAD 102 (186)
Q Consensus 25 ~~~~~L~v~i~~a~~L~~~~-~~~~dpy~~v~~~~~~~~T~~~~~~~~P~w~e~~~f~v~~~~~-~l~v~v~d~~~~~~d 102 (186)
...+.|.|+|++|++|+..+ .|.+||||++.++...++|++++++.||.|||+|.|.+..... .|.|+|||++.+++|
T Consensus 384 ~~~~~l~v~v~~a~~L~~~d~~~~sdpyv~v~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~~~~~~l~~~v~d~d~~~~~ 463 (510)
T 3jzy_A 384 SGIGRLMVHVIEATELKACKPNGKSNPYCEISMGSQSYTTRTIQDTLNPKWNFNCQFFIKDLYQDVLCLTLFDRDQFSPD 463 (510)
T ss_dssp --CEEEEEEEEEEESCCCCSTTSCCCEEEEEEETTEEEECCCCSSCSSCEEEEEEEEEESCTTTCEEEEEEEECCSSSSC
T ss_pred CCCceEEEEeceeecCCCCCCCCCCCeEEEEEECCeeccCCccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCCCC
Confidence 45689999999999999999 8999999999999999999999999999999999999987654 799999999999999
Q ss_pred CeeEEEEEecccccccceeeeEEEecCCCeeeEEEeeCCCCeecccceEEEECCEEEEEEeEEecccceecEEEEEEEE
Q 029885 103 DKMGKAYLNLQPIISAARLRHLVHVSSGETPLRKIIPDSENCLARESSIICINGEVVQNVWLRLCEVESGEIELKVKIV 181 (186)
Q Consensus 103 ~~lG~~~v~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~G~l~l~l~~~ 181 (186)
++||++.+++.++..+..... ....|+.+.+...|+|+++++..
T Consensus 464 d~lG~~~~~l~~l~~~~~~~~-----------------------------------~~~~~~~l~~~~~G~i~l~~~l~ 507 (510)
T 3jzy_A 464 DFLGRTEIPVAKIRTEQESKG-----------------------------------PMTRRLLLHEVPTGEVWVRFDLQ 507 (510)
T ss_dssp CEEEEEEEEHHHHHHHHHHHC-----------------------------------SCCEEEECBSSSSCEEEEEEEEE
T ss_pred CceEEEEEEHHHhccccCCCC-----------------------------------ceeeeecCCCCCCceEEEEEEEE
Confidence 999999999999877643110 12356667777889998888753
No 35
>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A
Probab=99.80 E-value=1e-18 Score=124.57 Aligned_cols=102 Identities=24% Similarity=0.310 Sum_probs=82.3
Q ss_pred CcceEEEEEEEEeEcCCCCC-CCCCCcEEEEEE--CCe---EEEeeeeeCCCCCeecCeEEEEeeCCC---ceEEEEEEE
Q 029885 25 QPFGQLKVTVVQGKRLVIRD-FKSSDPYVVLKL--GNQ---MAKTKVINSCLNPVWNEEHSLSLTEPV---GVLSLEVFD 95 (186)
Q Consensus 25 ~~~~~L~v~i~~a~~L~~~~-~~~~dpy~~v~~--~~~---~~~T~~~~~~~~P~w~e~~~f~v~~~~---~~l~v~v~d 95 (186)
+..+.|.|+|++|++|+..+ .+.+||||++++ +.. +++|++++++.||.|||+|.|.+.... ..|.|+|||
T Consensus 27 ~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~v~V~d 106 (153)
T 1w15_A 27 STTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPCESLEEISVEFLVLD 106 (153)
T ss_dssp TTTTEEEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCCCCSCSSEEEEEEEEEECCSSSSTTEEEEEEEEE
T ss_pred CCCCEEEEEEEEeECCCCcCCCCCCCeEEEEEEEeCCeEeceEecCcccCCCCCeecceEEEECCHHHhCceEEEEEEEe
Confidence 45689999999999999998 889999999999 433 679999999999999999999988653 389999999
Q ss_pred cCCCCCCCeeEEEEEecccccccceeeeEEEec
Q 029885 96 KDRFKADDKMGKAYLNLQPIISAARLRHLVHVS 128 (186)
Q Consensus 96 ~~~~~~d~~lG~~~v~l~~l~~~~~~~~~~~l~ 128 (186)
++.++++++||.+.+++.+ .+.....|+.|.
T Consensus 107 ~d~~~~~~~lG~~~i~l~~--~~~~~~~W~~l~ 137 (153)
T 1w15_A 107 SERGSRNEVIGRLVLGATA--EGSGGGHWKEIC 137 (153)
T ss_dssp CCTTSCCEEEEEEEESTTC--CSHHHHHHHHHH
T ss_pred CCCCCCCcEEEEEEECCCC--CchHHHHHHHHH
Confidence 9999899999999999998 333345555553
No 36
>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A
Probab=99.79 E-value=2.2e-19 Score=129.76 Aligned_cols=102 Identities=29% Similarity=0.370 Sum_probs=87.3
Q ss_pred CcceEEEEEEEEeEcCCCCC-CCCCCcEEEEEECC-----eEEEeeeeeCCCCCeecCeEEEEeeCC---CceEEEEEEE
Q 029885 25 QPFGQLKVTVVQGKRLVIRD-FKSSDPYVVLKLGN-----QMAKTKVINSCLNPVWNEEHSLSLTEP---VGVLSLEVFD 95 (186)
Q Consensus 25 ~~~~~L~v~i~~a~~L~~~~-~~~~dpy~~v~~~~-----~~~~T~~~~~~~~P~w~e~~~f~v~~~---~~~l~v~v~d 95 (186)
+..+.|.|+|++|++|+..+ .+.+||||++++.. ..++|++++++.||.|||+|.|.+... ...|.|+|||
T Consensus 34 ~~~~~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d 113 (166)
T 2cm5_A 34 TQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISVWD 113 (166)
T ss_dssp TTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEE
T ss_pred CCCCEEEEEEEEeECCCCccCCCCCCcEEEEEEECCCCccceEeCCcccCCCCCcccceEEEEcchHhcCCCEEEEEEEE
Confidence 45689999999999999998 88999999999954 578999999999999999999998753 2389999999
Q ss_pred cCCCCCCCeeEEEEEecccccccceeeeEEEec
Q 029885 96 KDRFKADDKMGKAYLNLQPIISAARLRHLVHVS 128 (186)
Q Consensus 96 ~~~~~~d~~lG~~~v~l~~l~~~~~~~~~~~l~ 128 (186)
++.++++++||.+.+++.++.. ....|+.|.
T Consensus 114 ~d~~~~~~~iG~~~i~l~~~~~--~~~~W~~l~ 144 (166)
T 2cm5_A 114 YDIGKSNDYIGGCQLGISAKGE--RLKHWYECL 144 (166)
T ss_dssp CCSSSCCEEEEEEEEETTCCHH--HHHHHHHHH
T ss_pred CCCCCCCcEEEeEEEecccCCc--hhHHHHHHH
Confidence 9999899999999999998643 334455543
No 37
>3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus}
Probab=99.78 E-value=1.1e-17 Score=116.15 Aligned_cols=124 Identities=14% Similarity=0.169 Sum_probs=101.7
Q ss_pred cCCcceEEEEEEEEeEcCCCCCCCCCCcEEEEEECCeEEEeeeee-CCCCCeecCeEEEEeeCC---CceEEEEEEEcCC
Q 029885 23 MRQPFGQLKVTVVQGKRLVIRDFKSSDPYVVLKLGNQMAKTKVIN-SCLNPVWNEEHSLSLTEP---VGVLSLEVFDKDR 98 (186)
Q Consensus 23 ~~~~~~~L~v~i~~a~~L~~~~~~~~dpy~~v~~~~~~~~T~~~~-~~~~P~w~e~~~f~v~~~---~~~l~v~v~d~~~ 98 (186)
......-|+|.|.+|.+|+ +.+|||+++.+.+.+++|++++ ++.+|.|||.|.|++..+ ...|.|.|+|++.
T Consensus 16 ~~~~~msL~V~l~~a~~Lp----g~~Dp~akv~FRg~k~kTkvi~~~~~npvfnE~F~wpl~~~ld~~e~L~v~V~d~~~ 91 (144)
T 3l9b_A 16 PRGSHMALIVHLKTVSELR----GRADRIAKVTFRGQSFYSRVLENCEDVADFDETFRWPVASSIDRNEVLEIQIFNYSK 91 (144)
T ss_dssp ---CCEEEEEEEEEEESCC----SCEEEEEEEEETTEEEECCCEEEECSCEEEEEEEEEEESSCCCTTCEEEEEEEEECT
T ss_pred cCCCcEEEEEEEEEecCCC----CCCCCeEEEEEeccceeeEEeccCCCCceEcceEEecCCCCCCCCCEEEEEEEECcc
Confidence 3345578999999999997 4789999999999999999998 699999999999998854 2399999999999
Q ss_pred CCCCCeeEEEEEecccccccceeeeEEEecCCCeeeEEEeeCCCCeecccceEEEECCEEEEEEeEEeccc-ceecEEEE
Q 029885 99 FKADDKMGKAYLNLQPIISAARLRHLVHVSSGETPLRKIIPDSENCLARESSIICINGEVVQNVWLRLCEV-ESGEIELK 177 (186)
Q Consensus 99 ~~~d~~lG~~~v~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~G~l~l~ 177 (186)
++++.+||.+.++|.++...+.......|.+. ++. ..++|.+.
T Consensus 92 v~~nrlIG~~~i~Lq~lv~~~~l~l~~~LvD~------------------------------------n~~~~~a~I~l~ 135 (144)
T 3l9b_A 92 VFSNKLIGTFRMVLQKVVEENRVEVSDTLIDD------------------------------------NNAIIKTSLSME 135 (144)
T ss_dssp TSCCEEEEEEEEESHHHHHHSEEEEEEEEECT------------------------------------TSCEEEEEEEEE
T ss_pred ccCCCEEEEEEEEhHHhccCCeEEEeecccCC------------------------------------CCCccccEEEEE
Confidence 99999999999999999888765544333322 222 24899999
Q ss_pred EEEEeCCCC
Q 029885 178 VKIVDAPSR 186 (186)
Q Consensus 178 l~~~~~~~~ 186 (186)
+.|.++++.
T Consensus 136 l~Y~pp~g~ 144 (144)
T 3l9b_A 136 VRYQAADGT 144 (144)
T ss_dssp EEEEETTCC
T ss_pred EEecCCCCC
Confidence 999998864
No 38
>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A
Probab=99.77 E-value=3.9e-18 Score=134.02 Aligned_cols=105 Identities=30% Similarity=0.388 Sum_probs=87.5
Q ss_pred CcceEEEEEEEEeEcCCCCC-CCCCCcEEEEEE---CCeEEEeeeeeCCCCCeecCeEEEEeeCCC---ceEEEEEEEcC
Q 029885 25 QPFGQLKVTVVQGKRLVIRD-FKSSDPYVVLKL---GNQMAKTKVINSCLNPVWNEEHSLSLTEPV---GVLSLEVFDKD 97 (186)
Q Consensus 25 ~~~~~L~v~i~~a~~L~~~~-~~~~dpy~~v~~---~~~~~~T~~~~~~~~P~w~e~~~f~v~~~~---~~l~v~v~d~~ 97 (186)
...+.|.|+|++|++|+.++ .+.+||||++++ +...++|++++++.||.|||+|.|.+...+ ..|.|+|||++
T Consensus 17 ~~~~~L~v~v~~a~~L~~~d~~g~~dPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~~~V~d~d 96 (296)
T 1dqv_A 17 YGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLAELAQRKLHFSVYDFD 96 (296)
T ss_dssp SSSCEEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTTSCEECCCCCSCSSCEEEEEEEEECCGGGGSSCCCEEEEEECC
T ss_pred CCCCEEEEEEEEeECCCCcCCCCCcCeEEEEEEEcCCCeeEeCCccCCCCCCcEeeEEEEEecHHHhcCCEEEEEEEEcC
Confidence 45689999999999999998 889999999999 456789999999999999999999987542 38999999999
Q ss_pred CCCCCCeeEEEEEe-cccccc-cceeeeEEEecC
Q 029885 98 RFKADDKMGKAYLN-LQPIIS-AARLRHLVHVSS 129 (186)
Q Consensus 98 ~~~~d~~lG~~~v~-l~~l~~-~~~~~~~~~l~~ 129 (186)
.+++|++||++.++ +.++.. ......|+.|..
T Consensus 97 ~~~~~~~iG~~~i~~l~~~~~~~~~~~~w~~L~~ 130 (296)
T 1dqv_A 97 RFSRHDLIGQVVLDNLLELAEQPPDRPLWRDILE 130 (296)
T ss_dssp SSSCCCEEEEEECCCTTGGGSSCSSCCCCEECBC
T ss_pred CCCCCceEEEEEeccccccccCCccceeeecccc
Confidence 99999999999985 444443 333456666653
No 39
>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1
Probab=99.76 E-value=8.1e-18 Score=117.11 Aligned_cols=88 Identities=24% Similarity=0.310 Sum_probs=73.9
Q ss_pred ceEEEEEEEEeEcCCCCCCCCCCcEEEEEECCeEEEeeeee-CCCCCeecCeEEEEeeCCCceEEEEEEEcCCCCCCCee
Q 029885 27 FGQLKVTVVQGKRLVIRDFKSSDPYVVLKLGNQMAKTKVIN-SCLNPVWNEEHSLSLTEPVGVLSLEVFDKDRFKADDKM 105 (186)
Q Consensus 27 ~~~L~v~i~~a~~L~~~~~~~~dpy~~v~~~~~~~~T~~~~-~~~~P~w~e~~~f~v~~~~~~l~v~v~d~~~~~~d~~l 105 (186)
.+.|.|+|++|++++. .+.+||||++. . +..+|.++. ++.||.|||+|.|.+......|.|+|||++ +++|++|
T Consensus 4 ~~~L~V~V~~A~~l~~--~g~~DPYv~v~-~-~~~kt~~~~~~t~nP~WnE~f~f~v~~~~~~L~~~V~D~d-~~~dd~i 78 (131)
T 2cjt_A 4 MSLLCVGVKKAKFDGA--QEKFNTYVTLK-V-QNVKSTTIAVRGSQPSWEQDFMFEINRLDLGLTVEVWNKG-LIWDTMV 78 (131)
T ss_dssp CEEEEEEEEEEECSSC--GGGCEEEEEEE-E-TTEEEECCCEESSSCEEEEEEEEEECCCSSEEEEEEEECC-SSCEEEE
T ss_pred ceEEEEEEEEeECCCC--CCCcCeEEEEE-e-cCEEEeEecCCCCCceECCEEEEEEeCCCCeEEEEEEECC-CCCCCeE
Confidence 4789999999998853 57889999999 2 334455544 699999999999999877669999999999 8899999
Q ss_pred EEEEEecccccccc
Q 029885 106 GKAYLNLQPIISAA 119 (186)
Q Consensus 106 G~~~v~l~~l~~~~ 119 (186)
|++.++|.++....
T Consensus 79 G~~~i~l~~l~~~~ 92 (131)
T 2cjt_A 79 GTVWIPLRTIRQSN 92 (131)
T ss_dssp EEEEEEGGGSCBCS
T ss_pred EEEEEEHHHhhhcC
Confidence 99999999986553
No 40
>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1
Probab=99.73 E-value=1.2e-16 Score=115.65 Aligned_cols=89 Identities=22% Similarity=0.295 Sum_probs=75.1
Q ss_pred cceEEEEEEEEeEcCCCCCCCCCCcEEEEEECCeEEEeeeee-CCCCCeecCeEEEEeeCCCceEEEEEEEcCCCCCCCe
Q 029885 26 PFGQLKVTVVQGKRLVIRDFKSSDPYVVLKLGNQMAKTKVIN-SCLNPVWNEEHSLSLTEPVGVLSLEVFDKDRFKADDK 104 (186)
Q Consensus 26 ~~~~L~v~i~~a~~L~~~~~~~~dpy~~v~~~~~~~~T~~~~-~~~~P~w~e~~~f~v~~~~~~l~v~v~d~~~~~~d~~ 104 (186)
..+.|.|+|++|++++. .+.+||||++. .+..+|+++. ++.||.|||+|.|.+......|.|+|||++ +++|++
T Consensus 12 ~~~~L~V~V~~A~~l~~--~g~~DPYV~v~--~~~~kt~~~~~~t~nP~WnE~f~f~v~~~~~~L~~~V~D~d-~~~dd~ 86 (167)
T 2cjs_A 12 ILSLLCVGVKKAKFDGA--QEKFNTYVTLK--VQNVESTTIAVRGSQPSWEQDFMFEINRLDLGLTVEVWNKG-LIWDTM 86 (167)
T ss_dssp CCCEEEEEEEEEECSSC--GGGCEEEEEEE--ETTEEEECCCEESSSCEEEEEEEEECCCTTSEEEEEEEECC-SSCCEE
T ss_pred ceEEEEEEEEEEECCCC--CCCCCeEEEEE--ecceEEEEecCCCCCCCCCCEEEEEeeCCCCEEEEEEEECC-CCCCce
Confidence 35799999999998842 57889999999 3345566655 599999999999999977669999999999 889999
Q ss_pred eEEEEEecccccccc
Q 029885 105 MGKAYLNLQPIISAA 119 (186)
Q Consensus 105 lG~~~v~l~~l~~~~ 119 (186)
||++.++|.++....
T Consensus 87 iG~~~i~L~~l~~~~ 101 (167)
T 2cjs_A 87 VGTVWIPLRTIRQSN 101 (167)
T ss_dssp EEEEEEEGGGSCBCS
T ss_pred EEEEEEEHHHhcccC
Confidence 999999999986543
No 41
>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A
Probab=99.70 E-value=3.9e-17 Score=141.34 Aligned_cols=105 Identities=23% Similarity=0.405 Sum_probs=95.7
Q ss_pred CcceEEEEEEEEeEcCCC---CC-CCCCCcEEEEEEC---CeEEEeeeeeCCCCCeecCeEEEEeeCCC-ceEEEEEEEc
Q 029885 25 QPFGQLKVTVVQGKRLVI---RD-FKSSDPYVVLKLG---NQMAKTKVINSCLNPVWNEEHSLSLTEPV-GVLSLEVFDK 96 (186)
Q Consensus 25 ~~~~~L~v~i~~a~~L~~---~~-~~~~dpy~~v~~~---~~~~~T~~~~~~~~P~w~e~~~f~v~~~~-~~l~v~v~d~ 96 (186)
.+.+.|.|+|++|++|+. ++ .+.+||||++++. ..+++|++++++.||.|||+|.|.+.... ..|.|+|||+
T Consensus 15 ~~~g~L~V~Vi~A~nL~~~~~~D~~g~sDPYV~V~l~~~~~~k~kTkvik~tlNPvWNEtF~F~v~~~~~~~L~~~V~D~ 94 (749)
T 1cjy_A 15 QYSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDA 94 (749)
T ss_dssp CCCEEEEEEEEEEECCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCBCEEEEEEC
T ss_pred CCccEEEEEEEEEECCCCccccCCCCCcCeEEEEEEecCCCCeEecceEcCCCCCeeeeEEEEEecCCCCCEEEEEEEEC
Confidence 456899999999999998 77 8899999999997 46799999999999999999999998743 4999999999
Q ss_pred CCCCCCCeeEEEEEecccccccceeeeEEEecCC
Q 029885 97 DRFKADDKMGKAYLNLQPIISAARLRHLVHVSSG 130 (186)
Q Consensus 97 ~~~~~d~~lG~~~v~l~~l~~~~~~~~~~~l~~~ 130 (186)
+.++ |++||++.+++.++..+..+..|+.|..+
T Consensus 95 D~~~-ddfIG~v~I~L~~L~~g~~~~~w~~L~~~ 127 (749)
T 1cjy_A 95 NYVM-DETLGTATFTVSSMKVGEKKEVPFIFNQV 127 (749)
T ss_dssp CSSS-CEEEEEECCBSTTSCTTCCCCEEEEETTT
T ss_pred CCCC-CceeEEEEEEHHHcCCCCceEEEEecCCC
Confidence 9998 99999999999999988888999999866
No 42
>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2
Probab=99.69 E-value=4.6e-17 Score=126.94 Aligned_cols=92 Identities=28% Similarity=0.420 Sum_probs=81.2
Q ss_pred CcceEEEEEEEEeEcCCCCC-CCCCCcEEEEEEC--C---eEEEeeeeeCCCCCeecCeEEEEeeCCC---ceEEEEEEE
Q 029885 25 QPFGQLKVTVVQGKRLVIRD-FKSSDPYVVLKLG--N---QMAKTKVINSCLNPVWNEEHSLSLTEPV---GVLSLEVFD 95 (186)
Q Consensus 25 ~~~~~L~v~i~~a~~L~~~~-~~~~dpy~~v~~~--~---~~~~T~~~~~~~~P~w~e~~~f~v~~~~---~~l~v~v~d 95 (186)
+..+.|.|.|++|++|+..+ .+.+|||+++++. + .+++|++++++.||.|||+|.|.+.... ..|.|+|||
T Consensus 147 p~~~~l~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d 226 (284)
T 2r83_A 147 PTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLD 226 (284)
T ss_dssp TTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCTTTGGGEEEEEEEEE
T ss_pred CcCCceEEEEEEeECCCCcCCCCCcCeEEEEEEEeCCcEeeeeccceecCCCCCEEceeEEEeCCHHHhCceEEEEEEEe
Confidence 34578999999999999998 8899999999983 2 4589999999999999999999998653 279999999
Q ss_pred cCCCCCCCeeEEEEEeccccc
Q 029885 96 KDRFKADDKMGKAYLNLQPII 116 (186)
Q Consensus 96 ~~~~~~d~~lG~~~v~l~~l~ 116 (186)
++.++++++||++.+++..+.
T Consensus 227 ~d~~~~~~~iG~~~i~l~~~~ 247 (284)
T 2r83_A 227 YDKIGKNDAIGKVFVGYNSTG 247 (284)
T ss_dssp CCSSSCCCEEEEEEEETTCCH
T ss_pred CCCCCCCcEEEEEEECCCCCC
Confidence 999999999999999998754
No 43
>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A
Probab=99.68 E-value=8.4e-16 Score=131.53 Aligned_cols=94 Identities=22% Similarity=0.362 Sum_probs=84.0
Q ss_pred cceEEEEEEEEeEcCCCCC---CCCCCcEEEEEECC-----eEEEeeeeeCC-CCCeecCeEEEEeeCCCc-eEEEEEEE
Q 029885 26 PFGQLKVTVVQGKRLVIRD---FKSSDPYVVLKLGN-----QMAKTKVINSC-LNPVWNEEHSLSLTEPVG-VLSLEVFD 95 (186)
Q Consensus 26 ~~~~L~v~i~~a~~L~~~~---~~~~dpy~~v~~~~-----~~~~T~~~~~~-~~P~w~e~~~f~v~~~~~-~l~v~v~d 95 (186)
..+.|.|+|++|++|+..+ .+.+||||++.+.+ .+++|++++++ .||.|||+|.|.+..++. .|.|+|||
T Consensus 495 ~~~~L~V~Vi~A~~L~~~d~~~~~~~DPYV~V~l~g~~~d~~~~kTkvi~~ng~NP~WnE~f~F~v~~~el~~L~~~V~D 574 (624)
T 1djx_A 495 RPERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDLALVRFMVED 574 (624)
T ss_dssp CCEEEEEEEEEEESCCCCSSCSSSCCCEEEEEEEESSGGGCEEEECCCCTTCSSSCEEEEEEEEEESCGGGCEEEEEEEE
T ss_pred cceEEEEEEEEcCCCCcccccccCCCCcEEEEEEecCCCCcceeecccccCCCCCCccCceEEEEEecCCCCEEEEEEEE
Confidence 5689999999999999887 57899999999933 67899999996 999999999999987654 89999999
Q ss_pred cCCCCCCCeeEEEEEecccccccc
Q 029885 96 KDRFKADDKMGKAYLNLQPIISAA 119 (186)
Q Consensus 96 ~~~~~~d~~lG~~~v~l~~l~~~~ 119 (186)
++.++++++||++.++|..+..+.
T Consensus 575 ~D~~~~dd~iG~~~ipl~~L~~G~ 598 (624)
T 1djx_A 575 YDSSSKNDFIGQSTIPWNSLKQGY 598 (624)
T ss_dssp CCSSSCCEEEEEEEEEGGGBCCEE
T ss_pred cCCCCCCceeEEEEEEHHHcCCCc
Confidence 999999999999999999987764
No 44
>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A
Probab=99.60 E-value=3.4e-16 Score=122.91 Aligned_cols=93 Identities=27% Similarity=0.338 Sum_probs=82.1
Q ss_pred CcceEEEEEEEEeEcCCCCC-CCCCCcEEEEEEC--C---eEEEeeeeeCCCCCeecCeEEEEeeCCC---ceEEEEEEE
Q 029885 25 QPFGQLKVTVVQGKRLVIRD-FKSSDPYVVLKLG--N---QMAKTKVINSCLNPVWNEEHSLSLTEPV---GVLSLEVFD 95 (186)
Q Consensus 25 ~~~~~L~v~i~~a~~L~~~~-~~~~dpy~~v~~~--~---~~~~T~~~~~~~~P~w~e~~~f~v~~~~---~~l~v~v~d 95 (186)
+..+.|.|.|++|++|+.++ .+.+|||+++++. + .+++|++++++.||.|||+|.|.+.... ..|.|+|||
T Consensus 149 ~~~~~l~v~v~~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d 228 (296)
T 1dqv_A 149 PTAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIAVVD 228 (296)
T ss_dssp TTTTEEEEEEEEEESCCCCSSSSCCCEEEEECCCTTCCTTSCEECCCCCSCSSCEEEECCCCCCCSGGGGSCCCCCEEEE
T ss_pred cccceeEEEEEEeecCCccCCCCCCCcEEEEEEEeCCcCccceecceecCCCCCeECceEEEEcCHHHccCcEEEEEEEe
Confidence 34689999999999999998 8889999999985 2 4689999999999999999999987653 379999999
Q ss_pred cCCCCCCCeeEEEEEecccccc
Q 029885 96 KDRFKADDKMGKAYLNLQPIIS 117 (186)
Q Consensus 96 ~~~~~~d~~lG~~~v~l~~l~~ 117 (186)
++.++++++||.+.+++..+..
T Consensus 229 ~d~~~~~~~iG~~~i~l~~~~~ 250 (296)
T 1dqv_A 229 YDCIGHNEVIGVCRVGPEAADP 250 (296)
T ss_dssp CCSSSCCEEEEECCCSSCTTCH
T ss_pred CCCCCCCceEEEEEECCccCCc
Confidence 9999999999999999997644
No 45
>3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus}
Probab=99.56 E-value=2.4e-16 Score=131.53 Aligned_cols=101 Identities=16% Similarity=0.199 Sum_probs=14.6
Q ss_pred cceEEEEEEEEeEcCCCCCCCCCCcEEEEEECCe-EEEeeeeeCC---CCCeecCeEEEEeeCCCceEEEEEEEc-C---
Q 029885 26 PFGQLKVTVVQGKRLVIRDFKSSDPYVVLKLGNQ-MAKTKVINSC---LNPVWNEEHSLSLTEPVGVLSLEVFDK-D--- 97 (186)
Q Consensus 26 ~~~~L~v~i~~a~~L~~~~~~~~dpy~~v~~~~~-~~~T~~~~~~---~~P~w~e~~~f~v~~~~~~l~v~v~d~-~--- 97 (186)
..+.|.|+|++|++|+.++ ||||++++++. ..+|++++++ .||.|||+|.|.+......|.++|||. +
T Consensus 9 ~~~~L~V~VieAk~L~~~d----dpYv~v~l~~~~~~kT~v~~kt~~glnP~WnE~F~f~~~~~~~~L~v~V~d~~d~~~ 84 (483)
T 3bxj_A 9 VDNVLKLWIIEARELPPKK----RYYCELCLDDMLYARTTSKPRSASGDTVFWGEHFEFNNLPAVRALRLHLYRDSDKKR 84 (483)
T ss_dssp EEECC-------------------------------------------------CCEECC--------------------
T ss_pred eccEEEEEEEEcCCcCCCC----CCeEEEEECCeEEeeeeEEeCCCCCCCCccccEEEEecCCCccEEEEEEEecCCccc
Confidence 3578999999999998875 99999999765 5799999998 999999999998655446899999994 4
Q ss_pred CCCCCCeeEEEEEecccccccceeeeEEEecCC
Q 029885 98 RFKADDKMGKAYLNLQPIISAARLRHLVHVSSG 130 (186)
Q Consensus 98 ~~~~d~~lG~~~v~l~~l~~~~~~~~~~~l~~~ 130 (186)
..++|++||.+.+++.++..+...+.|++|...
T Consensus 85 ~~~~d~~lG~v~i~l~~l~~~~~~~~W~~L~~~ 117 (483)
T 3bxj_A 85 KKDKAGYVGLVTVPVATLAGRHFTEQWYPVTLP 117 (483)
T ss_dssp ----------------------CCEECC-----
T ss_pred cCCCCceEEEEEEEHHHhcCCCCCCeEEECCCC
Confidence 367899999999999999988888899988543
No 46
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A
Probab=99.50 E-value=4.5e-14 Score=122.16 Aligned_cols=102 Identities=37% Similarity=0.444 Sum_probs=89.4
Q ss_pred ceEEEEEEEEeEcCCCCC-CCCCCcEEEEEE-----CCeEEEeeeeeCCCCCeecCeEEEEeeCCC--ceEEEEEEEcCC
Q 029885 27 FGQLKVTVVQGKRLVIRD-FKSSDPYVVLKL-----GNQMAKTKVINSCLNPVWNEEHSLSLTEPV--GVLSLEVFDKDR 98 (186)
Q Consensus 27 ~~~L~v~i~~a~~L~~~~-~~~~dpy~~v~~-----~~~~~~T~~~~~~~~P~w~e~~~f~v~~~~--~~l~v~v~d~~~ 98 (186)
.+.|.|.|.+|++|+.++ .+.+|||+++.+ ...+++|++++++.||.|||+|.|.+.... ..|.++|||++.
T Consensus 171 ~~~L~V~v~~a~~L~~~d~~g~sDPyvkv~l~p~~~~~~k~kT~v~~~tlnP~wne~f~f~~~~~~~~~~L~v~v~d~d~ 250 (674)
T 3pfq_A 171 REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRFQLKESDKDRRLSVEIWDWDL 250 (674)
T ss_dssp SSEEEEEEEEEESCCCCSTTSSCCEEEEEEEESCSSCCSCEECCCCSSCSSCEEEEEEEEECCSTTTTCEEEEEEEECCS
T ss_pred cceeeeeeecccccCCCCcccccCcccccccccCccccccccccccccccCCCccceeeeecccCCccceeeeEEeeccc
Confidence 467999999999999999 999999999999 345689999999999999999999987543 379999999999
Q ss_pred CCCCCeeEEEEEecccccccceeeeEEEecC
Q 029885 99 FKADDKMGKAYLNLQPIISAARLRHLVHVSS 129 (186)
Q Consensus 99 ~~~d~~lG~~~v~l~~l~~~~~~~~~~~l~~ 129 (186)
.++|++||.+.+++.++..... ..|+.+..
T Consensus 251 ~~~dd~iG~~~i~l~~l~~~~~-~~w~~Lls 280 (674)
T 3pfq_A 251 TSRNDFMGSLSFGISELQKAGV-DGWFKLLS 280 (674)
T ss_dssp SSCCEECCBCCCBTTHHHHCCE-EEEEECBC
T ss_pred ccccccccccccchhhhccCCc-ccceeecc
Confidence 9999999999999999987664 66766644
No 47
>3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A
Probab=99.38 E-value=1.2e-11 Score=108.34 Aligned_cols=88 Identities=19% Similarity=0.348 Sum_probs=74.9
Q ss_pred ceEEEEEEEEeEcCCCCCCCCCCcEEEEEECC-------eEEEeeeeeC-CCCCeecCe-EEEE-eeCCCc-eEEEEEEE
Q 029885 27 FGQLKVTVVQGKRLVIRDFKSSDPYVVLKLGN-------QMAKTKVINS-CLNPVWNEE-HSLS-LTEPVG-VLSLEVFD 95 (186)
Q Consensus 27 ~~~L~v~i~~a~~L~~~~~~~~dpy~~v~~~~-------~~~~T~~~~~-~~~P~w~e~-~~f~-v~~~~~-~l~v~v~d 95 (186)
.+.|.|+|++|++|+.. .+||||++.+.+ .+++|+++.+ +.||.|||+ |.|. +..++. .|.|+|||
T Consensus 649 ~~~L~V~Visaq~L~~~---~~DPYV~V~l~g~p~d~~~~k~kTkvv~~nglNPvWNE~~F~F~~v~~pela~Lrf~V~D 725 (816)
T 3qr0_A 649 AGTIEIKIISAQFLSDK---QISSYVEVEMYGLPTDTVRKKFKTKIIENNGMDPYYDEKVFVFKKVVLPDLAVVRIIVSE 725 (816)
T ss_dssp CEEEEEEEEEEECCCSS---CCCEEEEEEEESSGGGCEEEEEECCCBCSCSSCCBCCCCCEEEEEESCGGGCEEEEEEEE
T ss_pred ceEEEEEEEEcccCCCC---CCCCeEEEEEeCCCcccccceeeeEEecCCCCCCeEcCceeEEccccCCCccEEEEEEEe
Confidence 47899999999999853 689999999843 5689999886 699999998 9998 766654 89999999
Q ss_pred cCCCCCCCeeEEEEEeccccccccee
Q 029885 96 KDRFKADDKMGKAYLNLQPIISAARL 121 (186)
Q Consensus 96 ~~~~~~d~~lG~~~v~l~~l~~~~~~ 121 (186)
++ +++||++.++|+.+..+.++
T Consensus 726 ~d----ddfiG~~~ipL~~L~~GyR~ 747 (816)
T 3qr0_A 726 EN----GKFIGHRVMPLDGIKPGYRH 747 (816)
T ss_dssp TT----SCEEEEEEEESTTCCCEEEE
T ss_pred cC----CCeeeEEEEEHHHcCCcceE
Confidence 85 78999999999999887654
No 48
>1yrk_A NPKC-delta, protein kinase C, delta type; C2 domain, protein binding; HET: PTR; 1.70A {Homo sapiens} PDB: 1bdy_A
Probab=99.36 E-value=3e-11 Score=81.56 Aligned_cols=113 Identities=12% Similarity=0.296 Sum_probs=85.2
Q ss_pred eEEEEEEEEeEcCCCCC-CCCCCcEEEEEECCeE----EEe-eeeeCCCCCeecCeEEEEeeCCCceEEEEEEEcCCCCC
Q 029885 28 GQLKVTVVQGKRLVIRD-FKSSDPYVVLKLGNQM----AKT-KVINSCLNPVWNEEHSLSLTEPVGVLSLEVFDKDRFKA 101 (186)
Q Consensus 28 ~~L~v~i~~a~~L~~~~-~~~~dpy~~v~~~~~~----~~T-~~~~~~~~P~w~e~~~f~v~~~~~~l~v~v~d~~~~~~ 101 (186)
.-|+|.+.++.--+... ....||||.+.+.... .+| ...++|..|.||++|...+.+. +.|.|.|++...
T Consensus 6 ~flRi~~~~~~~~~~~~~~~~lDPy~aV~vdE~~~~e~g~t~~~K~kT~~P~Wne~Fd~~V~~G-r~l~i~Vfh~a~--- 81 (126)
T 1yrk_A 6 PFLRIAFNSYELGSLQAEDEANQPFCAVKMKEALSTERGKTLVQKKPTMYPEWKSTFDAHIYEG-RVIQIVLMRAAE--- 81 (126)
T ss_dssp CEEEEEEEEEECSSCCCSSSSCCCEEEEEEEEEEEETTEEEEECCSCCBCCCTTCEEEEECCTT-CEEEEEEEEETT---
T ss_pred ccEEeeeccccccccCCccccCCceEEEEeeeeEEcccceeecccCCCCCcCccceEEeeeeCC-EEEEEEEEcCCC---
Confidence 45788877765322222 3468999999986543 254 5566699999999999999886 699999998765
Q ss_pred CCeeEEEEEecccccccceeeeEEEecCCCeeeEEEeeCCCCeecccceEEEECCEEEEEEeEEecccceecEEEEEEEE
Q 029885 102 DDKMGKAYLNLQPIISAARLRHLVHVSSGETPLRKIIPDSENCLARESSIICINGEVVQNVWLRLCEVESGEIELKVKIV 181 (186)
Q Consensus 102 d~~lG~~~v~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~G~l~l~l~~~ 181 (186)
+|++.++++++++.+.... .+| ..+.|+.|+ +.|+|++.++|.
T Consensus 82 -~fvAn~tV~~edL~~~c~~------~~g----------------------------~~e~WvdLe--P~Gkl~~~i~~~ 124 (126)
T 1yrk_A 82 -EPVSEVTVGVSVLAERCKK------NNG----------------------------KAEFWLDLQ--PQAKVLMSVQYF 124 (126)
T ss_dssp -EEEEEEEEEHHHHHHHHHT------TTT----------------------------EEEEEEECB--SSCEEEEEEEEE
T ss_pred -CeeeEEEEEHHHHHhhhcc------CCC----------------------------ceEEEEecc--cCcEEEEEEEEe
Confidence 8999999999999865211 011 457888888 899999999986
No 49
>3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens}
Probab=99.36 E-value=8.3e-12 Score=109.87 Aligned_cols=88 Identities=24% Similarity=0.402 Sum_probs=73.6
Q ss_pred ceEEEEEEEEeEcCCCCCCCCCCcEEEEEECC------eEEEeeeeeC-CCCCeecC-eEEEE-eeCCCc-eEEEEEEEc
Q 029885 27 FGQLKVTVVQGKRLVIRDFKSSDPYVVLKLGN------QMAKTKVINS-CLNPVWNE-EHSLS-LTEPVG-VLSLEVFDK 96 (186)
Q Consensus 27 ~~~L~v~i~~a~~L~~~~~~~~dpy~~v~~~~------~~~~T~~~~~-~~~P~w~e-~~~f~-v~~~~~-~l~v~v~d~ 96 (186)
...|.|+|++|++|+.. .+||||+|.+.+ .+++|+++.+ +.||.||| +|.|. +..++. .|.|+|||+
T Consensus 724 ~~~L~V~Visaq~L~~~---~~DPYV~V~l~g~p~D~~~k~kTkvi~~NglNPvWnEe~F~F~~V~~pela~Lrf~V~D~ 800 (885)
T 3ohm_B 724 ANALRVKVISGQFLSDR---KVGIYVEVDMFGLPVDTRRKYRTRTSQGNSFNPVWDEEPFDFPKVVLPTLASLRIAAFEE 800 (885)
T ss_dssp CEEEEEEEEEEESCCSS---CCCEEEEEEEESSTTTCBCCCCCCCCSSCSSSCBCCCCCEEEEEESCGGGCEEEEEEEET
T ss_pred ceEEEEEEEEeccCccc---CCCcEEEEEEeCCCcccccceeeEEeeCCCcCCeeccceeEEeeEEcCCcCEEEEEEEcC
Confidence 45899999999999853 689999999843 3579999976 69999999 69998 765544 899999998
Q ss_pred CCCCCCCeeEEEEEeccccccccee
Q 029885 97 DRFKADDKMGKAYLNLQPIISAARL 121 (186)
Q Consensus 97 ~~~~~d~~lG~~~v~l~~l~~~~~~ 121 (186)
+ ++|||++.++|..+..+.++
T Consensus 801 d----ddfiG~~~lpL~~L~~GyR~ 821 (885)
T 3ohm_B 801 G----GKFVGHRILPVSAIRSGYHY 821 (885)
T ss_dssp T----TEEEEEEEEETTTCCCEEEE
T ss_pred C----ccEEeeEEEEHHHcCCCceE
Confidence 7 78999999999998777553
No 50
>2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B
Probab=99.33 E-value=1.7e-11 Score=107.44 Aligned_cols=88 Identities=24% Similarity=0.389 Sum_probs=73.5
Q ss_pred cceEEEEEEEEeEcCCCCCCCCCCcEEEEEECC------eEEEee-eeeC-CCCCeecC-eEEE-EeeCCCc-eEEEEEE
Q 029885 26 PFGQLKVTVVQGKRLVIRDFKSSDPYVVLKLGN------QMAKTK-VINS-CLNPVWNE-EHSL-SLTEPVG-VLSLEVF 94 (186)
Q Consensus 26 ~~~~L~v~i~~a~~L~~~~~~~~dpy~~v~~~~------~~~~T~-~~~~-~~~P~w~e-~~~f-~v~~~~~-~l~v~v~ 94 (186)
..+.|.|+|++|++|+. +.+||||++.+.+ ++++|+ ++++ +.||.||| +|.| .+..++. .|.|.||
T Consensus 676 ~~~~L~V~Visa~~L~~---~~~DPYV~V~l~g~p~d~~~k~kTk~vv~~n~~NPvWnEe~f~F~~v~~~el~~Lr~~V~ 752 (799)
T 2zkm_X 676 VATTLSITVISGQFLSE---RSVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRVAVM 752 (799)
T ss_dssp TCEEEEEEEEEEESCCS---SCCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGGCEEEEEEE
T ss_pred eeeeEEEEEEeccccCc---cCCCcEEEEEEEecCCCcccceeecccccCCCCCCeeecceEEEEEEccCCccEEEEEEE
Confidence 35799999999999985 4689999999921 357899 7765 69999999 6999 8876654 8999999
Q ss_pred EcCCCCCCCeeEEEEEecccccccce
Q 029885 95 DKDRFKADDKMGKAYLNLQPIISAAR 120 (186)
Q Consensus 95 d~~~~~~d~~lG~~~v~l~~l~~~~~ 120 (186)
|++ +++||++.++|+.+..+..
T Consensus 753 D~d----~d~iG~~~ipl~~L~~G~r 774 (799)
T 2zkm_X 753 EEG----NKFLGHRIIPINALNSGYH 774 (799)
T ss_dssp ETT----TEEEEEEEEEGGGBCCEEE
T ss_pred EeC----CCccceEeeehhhcCCCcE
Confidence 986 7899999999999877644
No 51
>2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich, phosphotyrosine binding, TCR, T-cell, diacylglycerol, phorbol ester, structural genomics; NMR {Homo sapiens}
Probab=99.29 E-value=8.4e-11 Score=80.42 Aligned_cols=114 Identities=14% Similarity=0.283 Sum_probs=84.7
Q ss_pred ceEEEEEEEEeEcCCCCC--CCCCCcEEEEEECCeE----EEe-eeeeCCCCCeecCeEEEEeeCCCceEEEEEEEcCCC
Q 029885 27 FGQLKVTVVQGKRLVIRD--FKSSDPYVVLKLGNQM----AKT-KVINSCLNPVWNEEHSLSLTEPVGVLSLEVFDKDRF 99 (186)
Q Consensus 27 ~~~L~v~i~~a~~L~~~~--~~~~dpy~~v~~~~~~----~~T-~~~~~~~~P~w~e~~~f~v~~~~~~l~v~v~d~~~~ 99 (186)
..-|+|.+.+..--+... ....||||.+.+.... .+| ...++|..|.||++|...+.+. +.|.|.|++...
T Consensus 9 ~~flRi~l~~~~~~~~~~~~~~~lDPY~aV~VdE~~~te~gqtl~~KkkT~~P~Wne~Fd~~V~~G-r~l~i~Vfh~a~- 86 (138)
T 2enj_A 9 SPFLRIGLSNFDCGSCQSCQGEAVNPYCAVLVKEYVESENGQMYIQKKPTMYPPWDSTFDAHINKG-RVMQIIVKGKNV- 86 (138)
T ss_dssp CCCEEEEEEEEECCCCCCSCCCCCCCEEEEEEEEEEEETTEEEEEEEEEEECCCSSSEEEECCCSS-CEEEEEEECSSC-
T ss_pred CcceEEEeeccccCCCCCcccccCCceEEEEeeeeeeccCceeecccCCCCCccccceEeeeEECC-eEEEEEEEcCCC-
Confidence 345888887766544332 4468999999986542 566 5566699999999999998876 699999997654
Q ss_pred CCCCeeEEEEEecccccccceeeeEEEecCCCeeeEEEeeCCCCeecccceEEEECCEEEEEEeEEecccceecEEEEEE
Q 029885 100 KADDKMGKAYLNLQPIISAARLRHLVHVSSGETPLRKIIPDSENCLARESSIICINGEVVQNVWLRLCEVESGEIELKVK 179 (186)
Q Consensus 100 ~~d~~lG~~~v~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~G~l~l~l~ 179 (186)
+|++.++|.++++.+.... ..| ..+.|+.|+ +.|+|++.++
T Consensus 87 ---~fVAn~tV~~edL~~~ck~------~~g----------------------------~~e~WvdLe--P~Gkl~v~i~ 127 (138)
T 2enj_A 87 ---DLISETTVELYSLAERCRK------NNG----------------------------KTEIWLELK--PQGRMLMNAR 127 (138)
T ss_dssp ---SCCEEEEEESHHHHHHHHH------TTT----------------------------CEEEEEECB--SSCEEEEEEE
T ss_pred ---CeeeEEEEEHHHHHhhhcc------CCC----------------------------ceEEEEecc--cCcEEEEEEE
Confidence 8999999999999855211 001 346777777 8899999988
Q ss_pred EE
Q 029885 180 IV 181 (186)
Q Consensus 180 ~~ 181 (186)
|.
T Consensus 128 ~~ 129 (138)
T 2enj_A 128 YF 129 (138)
T ss_dssp EC
T ss_pred EE
Confidence 75
No 52
>2yrb_A Protein fantom; beta sandwich, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.7.1.1
Probab=95.98 E-value=0.17 Score=35.39 Aligned_cols=98 Identities=11% Similarity=0.129 Sum_probs=66.3
Q ss_pred ccccCCcceEEEEEEEEeEcCCCCC--CCCCCcEEEEE--ECC-eEEEeeeeeCCCCCeecCeEEEEeeCCC--------
Q 029885 20 NCIMRQPFGQLKVTVVQGKRLVIRD--FKSSDPYVVLK--LGN-QMAKTKVINSCLNPVWNEEHSLSLTEPV-------- 86 (186)
Q Consensus 20 ~~~~~~~~~~L~v~i~~a~~L~~~~--~~~~dpy~~v~--~~~-~~~~T~~~~~~~~P~w~e~~~f~v~~~~-------- 86 (186)
..-..+..+.+.+.|.++.--+..- .+..+|...+. +-+ +.+.|.++. +.+|.+|.+-.+.+....
T Consensus 10 ~~~l~~gEnlfEihi~~~~~~~~~l~~~~d~~p~tF~t~dF~dfEtq~Tpv~~-G~~p~y~fts~Y~V~~d~~fl~yL~~ 88 (156)
T 2yrb_A 10 TIHLERGENLFEIHINKVTFSSEVLQASGDKEPVTFCTYAFYDFELQTTPVVR-GLHPEYNFTSQYLVHVNDLFLQYIQK 88 (156)
T ss_dssp CSSCCSSCEEEEEEEEEECCCHHHHHHHCSSCCEEEEEECSTTCCCEECCCEE-SSSCCCCEEEEEEECCSHHHHHHHHH
T ss_pred hhhccCCCcEEEEEEeEEEEcHHHHhhccccCCcEEEEEEEeceEeeeccccc-CCCCCcceEEEEEEEeCHHHHHHHhc
Confidence 3445567899999999886322111 23345644444 433 557777766 789999999988886432
Q ss_pred ceEEEEEEEcCCCCCCCeeEEEEEecccccccc
Q 029885 87 GVLSLEVFDKDRFKADDKMGKAYLNLQPIISAA 119 (186)
Q Consensus 87 ~~l~v~v~d~~~~~~d~~lG~~~v~l~~l~~~~ 119 (186)
..+.++++..... ....||.++|+|.++.+..
T Consensus 89 ~~l~lELhqa~g~-~~~tla~~~I~l~~lLe~~ 120 (156)
T 2yrb_A 89 NTITLEVHQAYST-EYETIAACQLKFHEILEKS 120 (156)
T ss_dssp CCEEEEEEEECSS-CEEEEEEEEECCSHHHHCC
T ss_pred CCEEEEEEEeeCC-CceEEEEEEEEhHHhhCcC
Confidence 2788888876432 4558999999999998664
No 53
>3l4c_A Dedicator of cytokinesis protein 1; DOCK180, DOCK1, phosphoinositide specificity, guanine exchan factor, RHO GTPase, cytoskeleton, cell migration; 2.37A {Homo sapiens}
Probab=95.86 E-value=0.24 Score=36.56 Aligned_cols=97 Identities=14% Similarity=0.143 Sum_probs=59.2
Q ss_pred ccccccCCcceEEEEEEEEeEcCCCCCCCCCCcEEEEEE--C-------------C----eEEEeeeeeCCCCCeecCeE
Q 029885 18 LRNCIMRQPFGQLKVTVVQGKRLVIRDFKSSDPYVVLKL--G-------------N----QMAKTKVINSCLNPVWNEEH 78 (186)
Q Consensus 18 ~~~~~~~~~~~~L~v~i~~a~~L~~~~~~~~dpy~~v~~--~-------------~----~~~~T~~~~~~~~P~w~e~~ 78 (186)
.+-..+...++.|.|++.++.--........+.-+.+.+ . + ..++|.+...+.+|.|+|++
T Consensus 17 pevI~Pgd~RNdLYVtl~~g~F~~~~k~~aRNIeV~vevr~~~G~~i~~~I~~~sg~~~~se~~S~V~YHnk~P~w~EtI 96 (220)
T 3l4c_A 17 RGSHMPGDVRNDIYVTLVQGDFDKGSKTTAKNVEVTVSVYDEDGKRLEHVIFPGAGDEAISEYKSVIYYQVKQPRWFETV 96 (220)
T ss_dssp ---------CEEEEEEEEEEECCCSSSSSCCCEEEEEEEEETTSCBCCSCEECTTCCSCBSCEECCCCTTCSSCCCCEEE
T ss_pred cccccCCCCcccEEEEeeEeEECCCCCCCcceEEEEEEEEcCCCCCcccCEEcCCCCCCceeEEEEEEEcCCCCCceEeE
Confidence 344555567889999999886332111223345555544 1 0 23678888888999999999
Q ss_pred EEEeeCCC---ceEEEEEEEcCCC----CCCCeeEEEEEeccc
Q 029885 79 SLSLTEPV---GVLSLEVFDKDRF----KADDKMGKAYLNLQP 114 (186)
Q Consensus 79 ~f~v~~~~---~~l~v~v~d~~~~----~~d~~lG~~~v~l~~ 114 (186)
.+.++... .-|.|++++..-. ..+..+|-+.++|-+
T Consensus 97 Ki~LP~~~~~~~HLlFtFrH~S~~~k~dk~E~pfg~a~lPL~~ 139 (220)
T 3l4c_A 97 KVAIPIEDVNRSHLRFTFRHRSSQDSKDKSEKIFALAFVKLMR 139 (220)
T ss_dssp EEEECTTSSTTEEEEEEEEECCCCSSCCCCCCEEEEEEEESBC
T ss_pred EEeeChhhcCCeEEEEEEEEecccccccccCCeeEEEEEEccc
Confidence 99998653 2788998874421 123589999999864
No 54
>2wxf_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit delta isoform; transferase, phosphoprotein, isoform-specific inhibitors; HET: 039; 1.90A {Mus musculus} PDB: 2wxg_A* 2wxh_A* 2wxi_A* 2wxj_A* 2wxk_A* 2wxl_A* 2wxm_A* 2wxn_A* 2wxo_A* 2wxp_A* 2wxq_A* 2wxr_A 2x38_A*
Probab=93.62 E-value=0.9 Score=40.75 Aligned_cols=90 Identities=20% Similarity=0.349 Sum_probs=61.2
Q ss_pred CcceEEEEEEEEeEcCCCCCCCCCCcEEEEEE--CCe----EEEeeeeeCCCCCeecCeEEEEeeC---C-CceEEEEEE
Q 029885 25 QPFGQLKVTVVQGKRLVIRDFKSSDPYVVLKL--GNQ----MAKTKVINSCLNPVWNEEHSLSLTE---P-VGVLSLEVF 94 (186)
Q Consensus 25 ~~~~~L~v~i~~a~~L~~~~~~~~dpy~~v~~--~~~----~~~T~~~~~~~~P~w~e~~~f~v~~---~-~~~l~v~v~ 94 (186)
.-...+.|+|..+.++... ...+.|+.+.+ +++ ...|..+.-..+|.|||.+.|++.- | +..|.++||
T Consensus 214 ~~~~~f~i~i~~~~~~~~~--~~~~~~V~~~l~~g~~~l~~~~~T~~~~~~~~~~Wne~l~f~i~i~dLPr~a~L~~ti~ 291 (940)
T 2wxf_A 214 SLEQPFSIELIEGRKVNAD--ERMKLVVQAGLFHGNEMLCKTVSSSEVNVCSEPVWKQRLEFDISVCDLPRMARLCFALY 291 (940)
T ss_dssp TCCSEEEEEEEEEECCCC-----CEEEEEEEEEETTEESSCCEECCCEESCSSCEEEEEEEEEEEGGGCCTTCEEEEEEE
T ss_pred hcCCceEEEEEEecccCCC--CCceEEEEEEEEECCEEccCceecccccCCCCcccceEEEcccccccCCcccEEEEEEE
Confidence 3346899999999988653 34577887766 443 3456555557789999999998763 2 238999999
Q ss_pred EcCCC--C----------CCCeeEEEEEeccccc
Q 029885 95 DKDRF--K----------ADDKMGKAYLNLQPII 116 (186)
Q Consensus 95 d~~~~--~----------~d~~lG~~~v~l~~l~ 116 (186)
+.... + .+..+|.+.+++-+..
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~lg~~~~~lFd~~ 325 (940)
T 2wxf_A 292 AVVEKAKKARSTKKKSKKADCPIAWANLMLFDYK 325 (940)
T ss_dssp EEC----------------CEEEEEEEEESBCTT
T ss_pred EecCCccCccccccccccccceEEEEeeeEECCc
Confidence 85321 1 2348999999988644
No 55
>3hhm_A Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha isoform; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_A 2rd0_A 4a55_A* 2enq_A
Probab=91.82 E-value=1.2 Score=40.46 Aligned_cols=90 Identities=18% Similarity=0.255 Sum_probs=60.5
Q ss_pred cceEEEEEEEEeEcCCCCCCCCCCcEEEEEE--CCe----EEEeeeeeCCCCCeecCeEEEEeeC---C-CceEEEEEEE
Q 029885 26 PFGQLKVTVVQGKRLVIRDFKSSDPYVVLKL--GNQ----MAKTKVINSCLNPVWNEEHSLSLTE---P-VGVLSLEVFD 95 (186)
Q Consensus 26 ~~~~L~v~i~~a~~L~~~~~~~~dpy~~v~~--~~~----~~~T~~~~~~~~P~w~e~~~f~v~~---~-~~~l~v~v~d 95 (186)
-...+.|+|..+.++........+.|+.+.+ |.+ ..+|+.+. ..+|.|||.+.|++.- | +..|.|+||+
T Consensus 353 ~~~~f~v~i~~~~~~n~~~~~~~~~~V~~~l~hG~~~L~~~~~T~~~~-~~~~~Wne~l~f~i~i~dLPr~arL~~tl~~ 431 (1091)
T 3hhm_A 353 INSALRIKILCATYVNVNIRDIDKIYVRTGIYHGGEPLCDNVNTQRVP-CSNPRWNEWLNYDIYIPDLPRAARLCLSICS 431 (1091)
T ss_dssp CCSEEEEEEEEESCCCCCCSSCCCCCEEEEEESSSCSSCCEECCCCCC-TTSCEEEEEEEEEEEGGGCCTTCEEEEEECC
T ss_pred CCCCEEEEEEEecCCCCCccccceEEEEEEEEECCEEccCceeccccC-CCCCCCCeeEEecCccccCChhcEEEEEEEE
Confidence 3458899999998875433335678888877 332 34454333 4577899999998762 2 2389999998
Q ss_pred cCCC----CCCCeeEEEEEeccccc
Q 029885 96 KDRF----KADDKMGKAYLNLQPII 116 (186)
Q Consensus 96 ~~~~----~~d~~lG~~~v~l~~l~ 116 (186)
.... ..+..||.+.++|-+..
T Consensus 432 ~~~~~~~~~~~~~lg~~n~~lfd~~ 456 (1091)
T 3hhm_A 432 VKGRKGAKEEHCPLAWGNINLFDYT 456 (1091)
T ss_dssp CCCCC-------CCEEEEEESBCTT
T ss_pred ecCccCcccccceeEEeeeeeEccC
Confidence 6542 12458999999998754
No 56
>1e7u_A Phosphatidylinositol 3-kinase catalytic subunit; phosphoinositide 3-kinase gamma, secondary messenger generation, PI3K, PI 3K, wortmannin; HET: KWT; 2.0A {Sus scrofa} SCOP: a.118.1.6 b.7.1.1 d.15.1.5 d.144.1.4 PDB: 1e8x_A* 1e8w_A* 1e7v_A* 1e90_A* 3l54_A* 3s2a_A* 3qaq_A* 3qjz_A* 3qk0_A* 3qar_A* 3apc_A* 3apd_A* 3apf_A* 3dbs_A* 3l13_A* 3r7q_A* 3cst_A* 3csf_A* 3l16_A* 3l17_A* ...
Probab=90.70 E-value=2.4 Score=38.12 Aligned_cols=91 Identities=15% Similarity=0.122 Sum_probs=57.4
Q ss_pred cceEEEEEEEEeEcCCCCCCCCCCcEEEEEE--CCeE---EEeeeeeCCCCCeecCeEEEEeeC---CC-ceEEEEEEEc
Q 029885 26 PFGQLKVTVVQGKRLVIRDFKSSDPYVVLKL--GNQM---AKTKVINSCLNPVWNEEHSLSLTE---PV-GVLSLEVFDK 96 (186)
Q Consensus 26 ~~~~L~v~i~~a~~L~~~~~~~~dpy~~v~~--~~~~---~~T~~~~~~~~P~w~e~~~f~v~~---~~-~~l~v~v~d~ 96 (186)
-...+.|.|..+...........+.|+.+.+ +.+. .+|..+.-+.+|.|||.+.|++.- |. ..|.++||+.
T Consensus 216 ~~~~f~i~i~~~~~~~~~~~~~~~~~V~~~l~~G~~~l~~~~t~~~~~~~~~~Wne~l~f~i~i~dLPr~a~L~~ti~~~ 295 (961)
T 1e7u_A 216 CDRKFRVKIRGIDIPVLPRTADLTVFVEANIQYGQQVLCQRRTSPKPFTEEVLWNVWLEFSIKIKDLPKGALLNLQIYCG 295 (961)
T ss_dssp CCSEEEEEEEEEECSSCCTTSCEEEEEEEEEEETTEEEEEEECCCEECCSEEEEEEEEEEEEEGGGCCTTCEEEEEEEEE
T ss_pred ccCceEEEEeecccccccCCCCceEEEEEEEEECCEEcccceeeccccCCCcccceeEEeccccccCCcccEEEEEEEec
Confidence 3457888988876422111234567877665 5433 345445456789999999998763 22 3899999974
Q ss_pred CCC----------------CCCCeeEEEEEeccccc
Q 029885 97 DRF----------------KADDKMGKAYLNLQPII 116 (186)
Q Consensus 97 ~~~----------------~~d~~lG~~~v~l~~l~ 116 (186)
... +....+|.+.++|-+..
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~lg~~n~~lfd~~ 331 (961)
T 1e7u_A 296 AKPALSGKTSAEMPSPESKGKAQLLYYVNLLLIDHR 331 (961)
T ss_dssp EC--------------------CEEEEEEEESBCTT
T ss_pred ccCccccccccccccccccccceeEEEEeeeeecCC
Confidence 321 13448999999887654
No 57
>2y3a_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit beta isoform; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus}
Probab=75.94 E-value=4.5 Score=36.90 Aligned_cols=89 Identities=16% Similarity=0.200 Sum_probs=56.7
Q ss_pred cceEEEEEEEEeEcCCCCCCCCCCcEEEEEE--CCeE----EEeeeeeCCCCCeecCeEEEEeeCC---C-ceEEEEEEE
Q 029885 26 PFGQLKVTVVQGKRLVIRDFKSSDPYVVLKL--GNQM----AKTKVINSCLNPVWNEEHSLSLTEP---V-GVLSLEVFD 95 (186)
Q Consensus 26 ~~~~L~v~i~~a~~L~~~~~~~~dpy~~v~~--~~~~----~~T~~~~~~~~P~w~e~~~f~v~~~---~-~~l~v~v~d 95 (186)
-...+.|+|..+.++... ...+.|+.+.+ +++. ..|..+.-+.+|.|||.+.|++.-. . ..|.++||+
T Consensus 351 ~~~~f~i~i~~~~~~~~~--~~~~~~V~~~l~~g~~~L~~~~~T~~~~~~~~~~Wnewl~f~i~~~dLPr~a~L~~ti~~ 428 (1092)
T 2y3a_A 351 NNNPFQITLVKGNKLNTE--ETVKVHVRAGLFHGTELLCKTVVSSEISGKNDHIWNEQLEFDINICDLPRMARLCFAVYA 428 (1092)
T ss_dssp CCSEEEEEECCCCCCCCC--SSCCCCCBCCEEETTEESSCCCBCCCCCSSSCCCCCEEEEEEEESSSCCTTCEEEEECCC
T ss_pred cCCCEEEEEEEeccCCCC--CCceEEEEEEEEECCEEccCceecccccCCCCCccceeEEeCCccccCChhcEEEEEEEE
Confidence 346889999998887643 24566666544 5433 4455554477899999999987732 2 289999998
Q ss_pred cCCC----------------------CCCCeeEEEEEeccccc
Q 029885 96 KDRF----------------------KADDKMGKAYLNLQPII 116 (186)
Q Consensus 96 ~~~~----------------------~~d~~lG~~~v~l~~l~ 116 (186)
.... +.+..+|.+.+++-+..
T Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~lFd~~ 471 (1092)
T 2y3a_A 429 VLDKVKTKKSTKTINPSKYQTIRKAGKVHYPVAWVNTMVFDFK 471 (1092)
T ss_dssp C------------------------------CCEEEEESBCTT
T ss_pred ecCccccccccccccccccccccccccccceeEEEeeeeECCc
Confidence 5211 01238888888887644
No 58
>3u52_E Phenol hydroxylase component PHO; 4-helix bundle, dioxygen, hydrocarbons, oxidore; HET: MPO EPE; 1.95A {Pseudomonas stutzeri} PDB: 2inn_E* 2inp_E
Probab=21.70 E-value=22 Score=23.34 Aligned_cols=8 Identities=25% Similarity=0.791 Sum_probs=4.6
Q ss_pred Cccccccc
Q 029885 1 MFCSFLCS 8 (186)
Q Consensus 1 ~~~~~~~~ 8 (186)
|||+|.|+
T Consensus 35 lFcap~~~ 42 (119)
T 3u52_E 35 LFCAPFAL 42 (119)
T ss_dssp TSCSCEEE
T ss_pred eecCceee
Confidence 55666555
Done!