Query 029886
Match_columns 186
No_of_seqs 123 out of 135
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 05:12:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029886.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029886hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04278 Tic22: Tic22-like fam 100.0 7E-51 1.5E-55 350.4 13.4 179 1-184 63-273 (274)
2 TIGR00995 3a0901s06TIC22 chlor 100.0 1.6E-48 3.5E-53 333.1 17.0 171 1-179 70-263 (270)
3 PF04278 Tic22: Tic22-like fam 99.3 2.1E-12 4.6E-17 111.6 7.2 90 8-101 178-272 (274)
4 TIGR00995 3a0901s06TIC22 chlor 99.2 1.3E-10 2.7E-15 100.2 8.6 85 11-103 178-269 (270)
5 PF11360 DUF3110: Protein of u 94.7 0.23 5E-06 36.1 7.5 72 15-92 1-77 (86)
6 PF11572 DUF3234: Protein of u 89.6 1.6 3.4E-05 32.4 6.2 51 13-72 7-57 (103)
7 PF11042 DUF2750: Protein of u 87.9 2.4 5.1E-05 31.3 6.4 72 11-92 11-87 (104)
8 COG1225 Bcp Peroxiredoxin [Pos 81.7 3.8 8.3E-05 32.9 5.3 79 12-95 9-98 (157)
9 PF00578 AhpC-TSA: AhpC/TSA fa 77.4 3.4 7.4E-05 29.8 3.6 79 12-91 4-89 (124)
10 PF07179 SseB: SseB protein N- 77.0 19 0.0004 26.1 7.5 65 3-79 16-95 (124)
11 cd02970 PRX_like2 Peroxiredoxi 69.2 5.4 0.00012 29.7 3.0 80 13-93 2-89 (149)
12 cd02971 PRX_family Peroxiredox 61.9 10 0.00022 28.0 3.3 77 13-93 2-89 (140)
13 COG3691 Uncharacterized protei 61.1 25 0.00053 26.2 5.0 46 34-79 31-78 (98)
14 PRK09437 bcp thioredoxin-depen 59.9 11 0.00023 28.8 3.2 77 12-92 9-95 (154)
15 PRK15339 type III secretion sy 56.8 59 0.0013 31.2 8.1 119 20-150 50-184 (559)
16 cd03017 PRX_BCP Peroxiredoxin 53.7 13 0.00027 27.5 2.6 77 12-92 2-88 (140)
17 PRK00522 tpx lipid hydroperoxi 51.6 40 0.00087 26.4 5.3 75 12-92 23-108 (167)
18 PF04392 ABC_sub_bind: ABC tra 49.6 1.1E+02 0.0023 26.0 8.0 55 5-61 73-131 (294)
19 COG1999 Uncharacterized protei 49.2 83 0.0018 25.9 7.0 59 15-74 49-113 (207)
20 PF02829 3H: 3H domain; Inter 46.6 1.2E+02 0.0025 22.4 7.5 54 39-107 41-96 (98)
21 PF10882 bPH_5: Bacterial PH d 46.2 38 0.00082 24.1 4.0 38 15-57 62-99 (100)
22 cd06578 HemD Uroporphyrinogen- 42.8 1.3E+02 0.0029 23.8 7.2 88 35-128 49-143 (239)
23 cd03018 PRX_AhpE_like Peroxire 38.6 53 0.0012 24.4 4.0 64 11-75 5-72 (149)
24 COG4669 EscJ Type III secretor 38.1 1.6E+02 0.0034 25.5 7.1 57 42-113 28-84 (246)
25 cd03013 PRX5_like Peroxiredoxi 36.6 96 0.0021 24.0 5.3 83 12-100 4-105 (155)
26 PF11943 DUF3460: Protein of u 35.9 28 0.00062 23.7 1.8 19 44-62 4-22 (60)
27 PF12164 SporV_AA: Stage V spo 35.6 32 0.00069 25.1 2.2 46 5-72 34-79 (93)
28 cd00340 GSH_Peroxidase Glutath 34.5 61 0.0013 24.7 3.8 59 12-74 1-63 (152)
29 TIGR00743 conserved hypothetic 34.0 1.5E+02 0.0033 21.9 5.6 54 35-88 29-92 (95)
30 PF02630 SCO1-SenC: SCO1/SenC; 34.0 1.1E+02 0.0023 24.3 5.2 24 11-34 30-53 (174)
31 TIGR02544 III_secr_YscJ type I 33.2 2.7E+02 0.0059 22.8 8.8 56 42-112 26-81 (193)
32 PF06058 DCP1: Dcp1-like decap 32.8 95 0.0021 23.7 4.5 24 33-56 97-120 (122)
33 PF07862 Nif11: Nitrogen fixat 32.7 17 0.00036 22.9 0.3 22 42-64 1-22 (49)
34 cd03016 PRX_1cys Peroxiredoxin 32.6 53 0.0011 26.7 3.3 77 12-93 4-97 (203)
35 cd02968 SCO SCO (an acronym fo 31.5 45 0.00097 24.5 2.5 80 13-93 2-95 (142)
36 KOG0855 Alkyl hydroperoxide re 31.2 1.2E+02 0.0026 25.2 5.0 97 11-116 67-174 (211)
37 TIGR00854 pts-sorbose PTS syst 30.0 72 0.0016 25.1 3.6 39 66-104 96-135 (151)
38 PF12368 DUF3650: Protein of u 30.0 34 0.00074 19.8 1.2 13 1-13 16-28 (28)
39 COG0320 LipA Lipoate synthase 29.6 2.4E+02 0.0052 25.1 6.9 69 87-159 153-236 (306)
40 cd02960 AGR Anterior Gradient 29.2 58 0.0013 25.2 2.8 45 11-57 78-122 (130)
41 cd02951 SoxW SoxW family; SoxW 29.2 1.8E+02 0.0039 21.0 5.5 46 3-57 73-121 (125)
42 cd02130 PA_ScAPY_like PA_ScAPY 28.9 2.4E+02 0.0051 20.7 6.2 24 34-57 92-115 (122)
43 COG3603 Uncharacterized conser 28.7 55 0.0012 25.4 2.6 20 11-30 90-109 (128)
44 PF07411 DUF1508: Domain of un 28.6 1.6E+02 0.0035 18.7 4.6 38 14-60 6-43 (49)
45 TIGR00510 lipA lipoate synthas 27.7 4.2E+02 0.0092 23.2 8.4 79 88-170 148-241 (302)
46 smart00461 WH1 WASP homology r 27.5 81 0.0017 23.2 3.3 24 34-57 82-105 (106)
47 PF00568 WH1: WH1 domain; Int 27.4 2.1E+02 0.0046 20.9 5.5 23 35-57 88-110 (111)
48 cd04819 PA_2 PA_2: Protease-as 26.9 1.9E+02 0.0041 21.6 5.3 51 7-57 66-120 (127)
49 COG0157 NadC Nicotinate-nucleo 25.6 78 0.0017 27.9 3.2 38 120-161 172-209 (280)
50 TIGR03137 AhpC peroxiredoxin. 25.4 3.1E+02 0.0068 21.7 6.6 76 12-92 7-100 (187)
51 PF13905 Thioredoxin_8: Thiore 25.2 1.5E+02 0.0033 20.0 4.2 39 35-75 2-45 (95)
52 cd01207 Ena-Vasp Enabled-VASP- 24.9 1.7E+02 0.0037 22.1 4.6 24 34-57 83-106 (111)
53 PF14483 Cut8_M: Cut8 dimerisa 24.6 31 0.00068 21.1 0.5 23 42-64 10-32 (38)
54 cd02122 PA_GRAIL_like PA _GRAI 24.4 3.1E+02 0.0067 21.1 6.2 49 8-56 81-130 (138)
55 PRK11633 cell division protein 24.0 1.7E+02 0.0038 24.8 5.0 46 4-57 164-213 (226)
56 PRK13599 putative peroxiredoxi 23.6 2.2E+02 0.0047 23.6 5.5 84 12-100 7-108 (215)
57 PF13098 Thioredoxin_2: Thiore 23.3 1.4E+02 0.003 21.0 3.8 24 4-27 72-97 (112)
58 cd00837 EVH1 EVH1 (Enabled, Va 22.9 1.2E+02 0.0025 22.2 3.4 23 34-56 80-102 (104)
59 PF14595 Thioredoxin_9: Thiore 22.7 1.3E+02 0.0028 22.9 3.7 33 12-55 97-129 (129)
60 PF01329 Pterin_4a: Pterin 4 a 22.5 1.9E+02 0.0042 20.7 4.4 53 1-64 5-63 (95)
61 PTZ00256 glutathione peroxidas 22.2 1E+02 0.0023 24.4 3.2 64 8-75 15-84 (183)
62 PF03709 OKR_DC_1_N: Orn/Lys/A 22.1 35 0.00075 25.4 0.4 49 6-55 61-109 (115)
63 cd03014 PRX_Atyp2cys Peroxired 22.1 1.9E+02 0.0041 21.3 4.5 75 12-92 5-90 (143)
64 PRK11425 PTS system N-acetylga 21.9 1.2E+02 0.0026 24.1 3.4 66 37-103 56-135 (157)
65 PF10787 YfmQ: Uncharacterised 21.6 1.3E+02 0.0029 23.9 3.5 37 21-57 90-126 (149)
66 COG3643 Glutamate formiminotra 21.1 4.6E+02 0.01 23.0 7.0 91 33-159 45-155 (302)
67 COG0027 PurT Formate-dependent 20.7 2.9E+02 0.0062 25.3 5.9 75 12-96 35-109 (394)
68 PF12323 HTH_OrfB_IS605: Helix 20.7 1.7E+02 0.0036 17.9 3.3 20 83-102 4-23 (46)
69 PF10792 DUF2605: Protein of u 20.6 2.2E+02 0.0047 21.2 4.3 34 41-108 37-70 (98)
70 PF14815 NUDIX_4: NUDIX domain 20.5 77 0.0017 22.8 2.0 25 15-39 1-25 (114)
71 COG1036 Archaeal flavoproteins 20.4 2.2E+02 0.0048 23.4 4.7 44 5-50 117-162 (187)
No 1
>PF04278 Tic22: Tic22-like family; InterPro: IPR007378 Chloroplast function requires the import of nuclear encoded proteins from the cytoplasm across the chloroplast double membrane. This is accompished by two protein complexes, the Toc complex located at the outer membrane and the Tic complex loacted at the inner membrane []. The Toc complex recognises specific proteins by a cleavable N-terminal sequence and is primarily responsible for translocation through the outer membrane, while the Tic complex translocates the protein through the inner membrane. This entry represents Tic22, a core member of the Tic complex. It is believed to act as a link between both protein complexes, contacting the translocated protein in the intermembrane space after transport through the Toc complex, and directing it to the Tic complex [].; PDB: 4EV1_A.
Probab=100.00 E-value=7e-51 Score=350.36 Aligned_cols=179 Identities=44% Similarity=0.735 Sum_probs=135.8
Q ss_pred CCHHHHHHhcCCCcEEEEEcCCCCeEEEEcCCC-CceEEEeeeCHHHHHHHHHHHHhcCcccccCCeEEEEeeccchhhc
Q 029886 1 MSAEAIEERLAGVPVYALSNCNEEFVLVSGAKT-GKSLGLMCFKKEDAEALLHQMKSMDPAMRKEGSRVVPVPLNKVFQL 79 (186)
Q Consensus 1 l~~~~I~ekL~~VPVF~vtn~~g~p~l~~~~~~-~~~~~lFf~~~~DA~~~L~~~k~~~p~~~~~~~kV~~v~L~~vy~l 79 (186)
||+++|+++|++||||+|||++|+||+++++++ +..+++||||++||+++|+++|+++|+++++ +||.+|+|++||++
T Consensus 63 L~~~~V~~kL~~VPVF~itn~~G~p~l~~~~~~~~~~v~~~F~s~~dA~~~L~~lk~~~p~~~~~-~kV~pvsL~~vY~l 141 (274)
T PF04278_consen 63 LPEEEVEEKLAGVPVFTITNSQGEPVLVSGPDQGGKSVGLFFFSQQDAEAFLAQLKKSNPELASG-AKVVPVSLGKVYQL 141 (274)
T ss_dssp --HHHHHHHHTTSEEEEEE-TT--B-----TTS--SEEEEEES-HHHHHHHHHHHHH-SSHHHTT--EEEEEEHHHHHHH
T ss_pred CCHHHHHHHhcCceEEEEECCCCCEEEeccCCCCCceEEEEEecHHHHHHHHHHHhhhCccccCc-eEEEEecHHHHHHH
Confidence 789999999999999999999999999998874 5677788899999999999999999999988 99999999999999
Q ss_pred ------cccCeeEEEecCHHHHHHHHHHHHHcCCCCCCCCCccchH------------------------HHHHHHHHHH
Q 029886 80 ------KVNGVAFRLIPESTQVKNALREMEKAGFSDDAFAGVPVFQ------------------------EDLEKSLRRA 129 (186)
Q Consensus 80 ------~~~~~~f~~vP~~~qv~~A~~l~~~~g~~~~~f~GVPlF~------------------------edl~~~l~~~ 129 (186)
+.+++.|+|+|+++||++|+++++++|+.+++|+|||||+ |||+++|+++
T Consensus 142 ~~~~~~k~~~~~F~~vP~~~qV~~A~~ll~~~g~~~~~f~GVPvF~~~~~~~~Lti~~~~~~~iPlFF~kedL~~~l~k~ 221 (274)
T PF04278_consen 142 AQENKKKPEGLQFRFVPDPKQVEAALELLKKQGQKVKQFQGVPVFYAEGGKGYLTIKQDNKRIIPLFFDKEDLQAALEKA 221 (274)
T ss_dssp HHHTTT-TT-EEEEEE--HHHHHHHHHHHHTTT---S---S-EEEEEESST-B-EETTTTEEEEEEESSHHHHHHHHHHH
T ss_pred HHHhhcCCcCceEEEcCCHHHHHHHHHHHHhcCCCcccCCCeEEEEEcCCCceEEEeeCCeEEEEEEecHHHHHHHHHHH
Confidence 6789999999999999999999999999888999999999 9999999999
Q ss_pred hhhhcccCCCCc-cCceEEEeHHHHHHhhhcCCCCCcceEEEecCcccccCCCccc
Q 029886 130 SSDQNKLNPAFR-MGDIQVAVFEEIIKGMKESTTSAWNDVVFIPPGFDVSTNPNQA 184 (186)
Q Consensus 130 ~~~~~~~~P~~~-~~~I~V~~Le~vi~~m~~~~~~~~~~i~fiPp~~s~~~~~~~~ 184 (186)
++++ |++. +++|+|++|+++|++|++++|++|++++||||++|++.+-+.+
T Consensus 222 ~kq~----p~~~~~~~I~V~~Le~vI~~m~~~~d~~~~~i~fiP~~es~~~i~~~~ 273 (274)
T PF04278_consen 222 KKQQ----PDLAKEPKIQVVSLEDVIKTMEESDDSDLKKIVFIPPGESLEFIQSLK 273 (274)
T ss_dssp TTT-----TT-----EEEEEEHHHHHHHHHH---GGGGGEEEE--HHHHHHHHTS-
T ss_pred HHhC----CCCcCCceEEEEcHHHHHHHHhcCCCCCcceEEEECCHHHHHHHHHhc
Confidence 9887 7777 8999999999999999999999999999999999999884433
No 2
>TIGR00995 3a0901s06TIC22 chloroplast protein import component, Tic22 family. Two families of proteins are involved in the chloroplast envelope import appartus.They are the three proteins of the outer membrane (TOC) and four proteins in the inner membrane (TIC). This family is specific for the Tic22 protein.
Probab=100.00 E-value=1.6e-48 Score=333.13 Aligned_cols=171 Identities=36% Similarity=0.663 Sum_probs=155.8
Q ss_pred CCHHHHHHhcCCCcEEEEEcCCCCeEEEEcCCCCceEEEeeeCHHHHHHHHHHHHhcCcccccCCeEEEEeeccchhhcc
Q 029886 1 MSAEAIEERLAGVPVYALSNCNEEFVLVSGAKTGKSLGLMCFKKEDAEALLHQMKSMDPAMRKEGSRVVPVPLNKVFQLK 80 (186)
Q Consensus 1 l~~~~I~ekL~~VPVF~vtn~~g~p~l~~~~~~~~~~~lFf~~~~DA~~~L~~~k~~~p~~~~~~~kV~~v~L~~vy~l~ 80 (186)
||++||+++|++||||+|+|++|+||+++++++++++|+||++++||++||+++|++||+++++ +||++++||+||+++
T Consensus 70 L~e~eV~ekL~~VPVFtItn~~G~pvl~s~~~~~~~~gvf~s~qedA~afL~~lk~~~p~l~~~-~kV~pvsL~~vYkl~ 148 (270)
T TIGR00995 70 LPPEEVAKILAGTSVFTVSNAQNEFVLASDNDGEKSIGLLCFRQEDAEAFLAQLRKRKPEVGSQ-AKVVPITLDQVYKLK 148 (270)
T ss_pred CCHHHHHHHhcCCceEEEEcCCCCeEEEECCCCCceEEEEECCHHHHHHHHHHHHhhCccccCC-ceEEEEEHHHHHHHh
Confidence 7999999999999999999999999999999999999999888888999999999999999999 999999999999998
Q ss_pred ccCeeEEEecCHHHHHHHHHHHHHcCCCCCCCCCccchH--------------------HHHHHHHHHHhhhhcccCCCC
Q 029886 81 VNGVAFRLIPESTQVKNALREMEKAGFSDDAFAGVPVFQ--------------------EDLEKSLRRASSDQNKLNPAF 140 (186)
Q Consensus 81 ~~~~~f~~vP~~~qv~~A~~l~~~~g~~~~~f~GVPlF~--------------------edl~~~l~~~~~~~~~~~P~~ 140 (186)
.+++.|+|+|+++||++|++++ ++++ ++|.|||||+ |||+++|+++++++ |++
T Consensus 149 ~e~l~F~fiP~~~qV~~A~~ll-~~~~--~~~~GVPlF~~~~Lti~~~n~~~iP~FF~Kedlq~~L~~~kkq~----p~l 221 (270)
T TIGR00995 149 VEGIGFRFLPDPAQIKNALELP-AANS--EYFDGVPVFQSGLLVVQKKNERYCPVYFSKEDIEQELSKFKRES----PGM 221 (270)
T ss_pred hcCccEEEeCCHHHHHHHHHHH-hcCc--cCCCCccEEeecceEEEeCCeEEEeeEeeHHHHHHHHHHHhHhC----cCc
Confidence 8889999999999999999999 3344 4678999999 99999999999987 888
Q ss_pred c-cCceEEEeHHHHHHhhhcC--CCCCcceEEEecCcccccC
Q 029886 141 R-MGDIQVAVFEEIIKGMKES--TTSAWNDVVFIPPGFDVST 179 (186)
Q Consensus 141 ~-~~~I~V~~Le~vi~~m~~~--~~~~~~~i~fiPp~~s~~~ 179 (186)
+ +.+|+|++||+||++|+++ +|.+.++|.|+|+.++++.
T Consensus 222 ~~~~~I~V~~Le~vi~~m~~~~~~~~~~~~I~l~Ps~e~~~~ 263 (270)
T TIGR00995 222 ADSQVIMVGSMEDVLSKMETSEKDSGWEDQIFIPPGQEAIQH 263 (270)
T ss_pred CCCccEEEEeHHHHHHHHhccCCCCcccceEEECCCHHHHHH
Confidence 8 8999999999999999985 6666666666666666654
No 3
>PF04278 Tic22: Tic22-like family; InterPro: IPR007378 Chloroplast function requires the import of nuclear encoded proteins from the cytoplasm across the chloroplast double membrane. This is accompished by two protein complexes, the Toc complex located at the outer membrane and the Tic complex loacted at the inner membrane []. The Toc complex recognises specific proteins by a cleavable N-terminal sequence and is primarily responsible for translocation through the outer membrane, while the Tic complex translocates the protein through the inner membrane. This entry represents Tic22, a core member of the Tic complex. It is believed to act as a link between both protein complexes, contacting the translocated protein in the intermembrane space after transport through the Toc complex, and directing it to the Tic complex [].; PDB: 4EV1_A.
Probab=99.34 E-value=2.1e-12 Score=111.61 Aligned_cols=90 Identities=23% Similarity=0.349 Sum_probs=66.7
Q ss_pred HhcCCCcEEEEEcCCCCeEEEEcCCCCceEEEeeeCHHHHHHHHHHHHhcCcccccCCeEEEEeeccchhhc--cc---c
Q 029886 8 ERLAGVPVYALSNCNEEFVLVSGAKTGKSLGLMCFKKEDAEALLHQMKSMDPAMRKEGSRVVPVPLNKVFQL--KV---N 82 (186)
Q Consensus 8 ekL~~VPVF~vtn~~g~p~l~~~~~~~~~~~lFf~~~~DA~~~L~~~k~~~p~~~~~~~kV~~v~L~~vy~l--~~---~ 82 (186)
+.+.|||||.+.+.+ .+++...++..++|+| |+++|+++.++++++++|+++.+ .+|.+++|+.+++. ++ +
T Consensus 178 ~~f~GVPvF~~~~~~--~~Lti~~~~~~~iPlF-F~kedL~~~l~k~~kq~p~~~~~-~~I~V~~Le~vI~~m~~~~d~~ 253 (274)
T PF04278_consen 178 KQFQGVPVFYAEGGK--GYLTIKQDNKRIIPLF-FDKEDLQAALEKAKKQQPDLAKE-PKIQVVSLEDVIKTMEESDDSD 253 (274)
T ss_dssp S---S-EEEEEESST---B-EETTTTEEEEEEE-SSHHHHHHHHHHHTTT-TT------EEEEEEHHHHHHHHHH---GG
T ss_pred ccCCCeEEEEEcCCC--ceEEEeeCCeEEEEEE-ecHHHHHHHHHHHHHhCCCCcCC-ceEEEEcHHHHHHHHhcCCCCC
Confidence 557899999999988 6666667778999999 89999999999999999999999 99999999999987 22 3
Q ss_pred CeeEEEecCHHHHHHHHHH
Q 029886 83 GVAFRLIPESTQVKNALRE 101 (186)
Q Consensus 83 ~~~f~~vP~~~qv~~A~~l 101 (186)
--.++|||+.+.+++++++
T Consensus 254 ~~~i~fiP~~es~~~i~~~ 272 (274)
T PF04278_consen 254 LKKIVFIPPGESLEFIQSL 272 (274)
T ss_dssp GGGEEEE--HHHHHHHHTS
T ss_pred cceEEEECCHHHHHHHHHh
Confidence 4489999999999999765
No 4
>TIGR00995 3a0901s06TIC22 chloroplast protein import component, Tic22 family. Two families of proteins are involved in the chloroplast envelope import appartus.They are the three proteins of the outer membrane (TOC) and four proteins in the inner membrane (TIC). This family is specific for the Tic22 protein.
Probab=99.16 E-value=1.3e-10 Score=100.18 Aligned_cols=85 Identities=20% Similarity=0.331 Sum_probs=73.0
Q ss_pred CCCcEEEEEcCCCCeEEEEcCCCCceEEEeeeCHHHHHHHHHHHHhcCcccccCCeEEEEeeccchhhc--cc--c---C
Q 029886 11 AGVPVYALSNCNEEFVLVSGAKTGKSLGLMCFKKEDAEALLHQMKSMDPAMRKEGSRVVPVPLNKVFQL--KV--N---G 83 (186)
Q Consensus 11 ~~VPVF~vtn~~g~p~l~~~~~~~~~~~lFf~~~~DA~~~L~~~k~~~p~~~~~~~kV~~v~L~~vy~l--~~--~---~ 83 (186)
.|||||.+ +.+.+. .++..++|+| |+++|+++.|+++|+++|+++.+ .+|.+++|+.+++. ++ + .
T Consensus 178 ~GVPlF~~-----~~Lti~-~~n~~~iP~F-F~Kedlq~~L~~~kkq~p~l~~~-~~I~V~~Le~vi~~m~~~~~~~~~~ 249 (270)
T TIGR00995 178 DGVPVFQS-----GLLVVQ-KKNERYCPVY-FSKEDIEQELSKFKRESPGMADS-QVIMVGSMEDVLSKMETSEKDSGWE 249 (270)
T ss_pred CCccEEee-----cceEEE-eCCeEEEeeE-eeHHHHHHHHHHHhHhCcCcCCC-ccEEEEeHHHHHHHHhccCCCCccc
Confidence 58999999 444444 6668999999 79999999999999999999999 99999999999986 21 2 3
Q ss_pred eeEEEecCHHHHHHHHHHHH
Q 029886 84 VAFRLIPESTQVKNALREME 103 (186)
Q Consensus 84 ~~f~~vP~~~qv~~A~~l~~ 103 (186)
-.+.|+|+.+.+++++++.+
T Consensus 250 ~~I~l~Ps~e~~~~iq~~~~ 269 (270)
T TIGR00995 250 DQIFIPPGQEAIQHMQSLIA 269 (270)
T ss_pred ceEEECCCHHHHHHHHHHhc
Confidence 48899999999999998753
No 5
>PF11360 DUF3110: Protein of unknown function (DUF3110); InterPro: IPR021503 This family of proteins has no known function.
Probab=94.70 E-value=0.23 Score=36.07 Aligned_cols=72 Identities=14% Similarity=0.285 Sum_probs=53.4
Q ss_pred EEEEE---cCCC-CeEEEEcCCCCceEEEeeeCHHHHHHHHHHHHhcCcccccCCeEEEEeeccchhhc-cccCeeEEEe
Q 029886 15 VYALS---NCNE-EFVLVSGAKTGKSLGLMCFKKEDAEALLHQMKSMDPAMRKEGSRVVPVPLNKVFQL-KVNGVAFRLI 89 (186)
Q Consensus 15 VF~vt---n~~g-~p~l~~~~~~~~~~~lFf~~~~DA~~~L~~~k~~~p~~~~~~~kV~~v~L~~vy~l-~~~~~~f~~v 89 (186)
||+++ +.++ ..+.+... +..++.+| =+.+||.+|...|..+.-. . ..|..+..+.+..+ ++.|..+++|
T Consensus 1 v~VL~f~~~~~~eGI~si~~~-~~~~Vl~F-E~edDA~RYa~lLEAqd~~---~-p~Ve~id~~~i~~fC~~~gy~~~iv 74 (86)
T PF11360_consen 1 VYVLLFNAGTETEGIYSIQNK-DRNVVLMF-EDEDDAERYAGLLEAQDFP---D-PTVEEIDPEEIEEFCRSAGYEYEIV 74 (86)
T ss_pred CEEEEecCCCCCCcEEEEEeC-CCCEEEEE-ccHHHHHHHHHHHHhcCCC---C-CCeEEECHHHHHHHHHHCCceEEEE
Confidence 57777 3344 44444433 36788888 6999999999999765432 2 57999999999998 7888999999
Q ss_pred cCH
Q 029886 90 PES 92 (186)
Q Consensus 90 P~~ 92 (186)
|.-
T Consensus 75 ~~g 77 (86)
T PF11360_consen 75 PPG 77 (86)
T ss_pred CCC
Confidence 864
No 6
>PF11572 DUF3234: Protein of unknown function (DUF3234); InterPro: IPR021628 This bacterial family of proteins has no known function. Some members in this family of proteins are annotated as TTHA0547 however this cannot be confirmed. ; PDB: 2Z0R_J.
Probab=89.64 E-value=1.6 Score=32.39 Aligned_cols=51 Identities=25% Similarity=0.409 Sum_probs=38.2
Q ss_pred CcEEEEEcCCCCeEEEEcCCCCceEEEeeeCHHHHHHHHHHHHhcCcccccCCeEEEEee
Q 029886 13 VPVYALSNCNEEFVLVSGAKTGKSLGLMCFKKEDAEALLHQMKSMDPAMRKEGSRVVPVP 72 (186)
Q Consensus 13 VPVF~vtn~~g~p~l~~~~~~~~~~~lFf~~~~DA~~~L~~~k~~~p~~~~~~~kV~~v~ 72 (186)
=|=|++.+..|+-++...-. .+.-++. .|.++|++|+++ +|++ |.+|.++-
T Consensus 7 g~WYVLe~~pGEHLvlealg-qrls~iW-tS~~~A~~F~~~----~p~~---GM~V~~Le 57 (103)
T PF11572_consen 7 GTWYVLEDEPGEHLVLEALG-QRLSGIW-TSRELAQAFLAR----HPEL---GMRVSPLE 57 (103)
T ss_dssp SSEEEEESSTT-BEEEEETT-EEEEEEB-SSHHHHHHHHHT----STSS-----EEEEE-
T ss_pred cceEEecCCCCceeeHHHHh-hhHHhhe-ecHHHHHHHHHh----Cccc---CcEeecch
Confidence 47799999999999987543 4566666 999999999987 6886 58998874
No 7
>PF11042 DUF2750: Protein of unknown function (DUF2750); InterPro: IPR021284 This family is conserved in Proteobacteria. The function is not known.
Probab=87.92 E-value=2.4 Score=31.27 Aligned_cols=72 Identities=19% Similarity=0.279 Sum_probs=51.1
Q ss_pred CCCcEEEEEcCCCCeEEEEcCCCCceEEEeeeCHHHHHHHHHHHHhcCcccccCCeEEEEeeccchhhc-----cccCee
Q 029886 11 AGVPVYALSNCNEEFVLVSGAKTGKSLGLMCFKKEDAEALLHQMKSMDPAMRKEGSRVVPVPLNKVFQL-----KVNGVA 85 (186)
Q Consensus 11 ~~VPVF~vtn~~g~p~l~~~~~~~~~~~lFf~~~~DA~~~L~~~k~~~p~~~~~~~kV~~v~L~~vy~l-----~~~~~~ 85 (186)
..==||++.+.+| .++....++..+++++ =+++-|++.... + .++ .++..++|+....- ..+++.
T Consensus 11 ~~e~vw~L~~~~g-~~~~~~~~~~~~~p~W-~~~~~A~~~~~~------e-w~~-~~~~~I~L~~Fle~wl~~L~~d~~~ 80 (104)
T PF11042_consen 11 DSEEVWGLKDEDG-WVLCDSDEGEDVLPFW-PSKEFAEACATD------E-WAD-YKPKEISLDEFLEEWLPGLQEDGVL 80 (104)
T ss_pred hCCEEEEEEcCCc-EEEeecCCCcEEEEeC-CCHHHHHHHHhc------c-ccc-CeEEEEEHHHHHHHHhHhHHHCCCE
Confidence 3445899999999 6666655545568888 699989886654 2 334 89999999988862 566665
Q ss_pred EEEecCH
Q 029886 86 FRLIPES 92 (186)
Q Consensus 86 f~~vP~~ 92 (186)
.-+-|+.
T Consensus 81 vgv~~~~ 87 (104)
T PF11042_consen 81 VGVFPNP 87 (104)
T ss_pred EEEecCC
Confidence 5555554
No 8
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=81.70 E-value=3.8 Score=32.94 Aligned_cols=79 Identities=15% Similarity=0.231 Sum_probs=59.8
Q ss_pred CCcEEEEEcCCCCeEEEEcCCCCceEEEeee-------CHHHHHHHHHHHHhcCcccccCCeEEEEeeccchhhc----c
Q 029886 12 GVPVYALSNCNEEFVLVSGAKTGKSLGLMCF-------KKEDAEALLHQMKSMDPAMRKEGSRVVPVPLNKVFQL----K 80 (186)
Q Consensus 12 ~VPVF~vtn~~g~p~l~~~~~~~~~~~lFf~-------~~~DA~~~L~~~k~~~p~~~~~~~kV~~v~L~~vy~l----~ 80 (186)
..|=|.+.|.+|+.+..++-.+..++-+| + +-.+|.+|=+.+ +++.+-|+.|.-||-|.+.++ .
T Consensus 9 ~aPdF~Lp~~~g~~v~Lsd~~Gk~VVLyF-YPk~~TpgCT~Ea~~Frd~~----~ef~~~~a~V~GIS~Ds~~~~~~F~~ 83 (157)
T COG1225 9 KAPDFELPDQDGETVSLSDLRGKPVVLYF-YPKDFTPGCTTEACDFRDLL----EEFEKLGAVVLGISPDSPKSHKKFAE 83 (157)
T ss_pred cCCCeEeecCCCCEEehHHhcCCcEEEEE-CCCCCCCcchHHHHHHHHHH----HHHHhCCCEEEEEeCCCHHHHHHHHH
Confidence 47999999999999888777766566555 5 445677776665 333333599999999999998 4
Q ss_pred ccCeeEEEecCHHHH
Q 029886 81 VNGVAFRLIPESTQV 95 (186)
Q Consensus 81 ~~~~~f~~vP~~~qv 95 (186)
..++.|.|+.|...-
T Consensus 84 k~~L~f~LLSD~~~~ 98 (157)
T COG1225 84 KHGLTFPLLSDEDGE 98 (157)
T ss_pred HhCCCceeeECCcHH
Confidence 579999999998543
No 9
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=77.41 E-value=3.4 Score=29.84 Aligned_cols=79 Identities=14% Similarity=0.296 Sum_probs=49.7
Q ss_pred CCcEEEEEcCCCCeEEEEcCCCCceEEEeeeCH---HHHHHHHHHHHhcCcccccCCeEEEEeeccchhhc----cccCe
Q 029886 12 GVPVYALSNCNEEFVLVSGAKTGKSLGLMCFKK---EDAEALLHQMKSMDPAMRKEGSRVVPVPLNKVFQL----KVNGV 84 (186)
Q Consensus 12 ~VPVF~vtn~~g~p~l~~~~~~~~~~~lFf~~~---~DA~~~L~~~k~~~p~~~~~~~kV~~v~L~~vy~l----~~~~~ 84 (186)
.+|-|.++|.+|..+-.+.-.+..++=+| ++- ....+.+.++.+...++...|++|..|+.+...++ +..+.
T Consensus 4 ~~P~f~l~~~~g~~~~l~~l~gk~~vl~f-~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~ 82 (124)
T PF00578_consen 4 KAPDFTLTDSDGKTVSLSDLKGKPVVLFF-WPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDPEEIKQFLEEYGL 82 (124)
T ss_dssp BGGCEEEETTTSEEEEGGGGTTSEEEEEE-ESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHHHTC
T ss_pred CCCCcEeECCCCCEEEHHHHCCCcEEEEE-eCccCccccccchhHHHHHhhhhccceEEeeecccccccchhhhhhhhcc
Confidence 47999999999999887766544444334 443 33444454444444444433599999998877655 33456
Q ss_pred eEEEecC
Q 029886 85 AFRLIPE 91 (186)
Q Consensus 85 ~f~~vP~ 91 (186)
.|.++-|
T Consensus 83 ~~~~~~D 89 (124)
T PF00578_consen 83 PFPVLSD 89 (124)
T ss_dssp SSEEEEE
T ss_pred ccccccC
Confidence 6666665
No 10
>PF07179 SseB: SseB protein N-terminal domain; InterPro: IPR009839 This family consists of several SseB proteins, which appear to be found exclusively in Enterobacteria. SseB is known to enhance serine-sensitivity in Escherichia coli [] and is part of the Salmonella pathogenicity island 2 (SPI-2) translocon [].
Probab=77.04 E-value=19 Score=26.11 Aligned_cols=65 Identities=17% Similarity=0.274 Sum_probs=46.7
Q ss_pred HHHHHHhcCCCcEEEEEcCCCCe---------------EEEEcCCCCceEEEeeeCHHHHHHHHHHHHhcCcccccCCeE
Q 029886 3 AEAIEERLAGVPVYALSNCNEEF---------------VLVSGAKTGKSLGLMCFKKEDAEALLHQMKSMDPAMRKEGSR 67 (186)
Q Consensus 3 ~~~I~ekL~~VPVF~vtn~~g~p---------------~l~~~~~~~~~~~lFf~~~~DA~~~L~~~k~~~p~~~~~~~k 67 (186)
...+.+.|..-.+|+.+...+.. ..+..++|...+++| .|.+.+.++.. .. ..
T Consensus 16 ~~~~~~~L~~a~~lvpv~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~lpvF-Ts~e~l~~~~~----------~~-~~ 83 (124)
T PF07179_consen 16 EEAFLEALLKAEVLVPVDVDDDDEGGEIEFDDDSEIQFLTLEDPDGERYLPVF-TSWEELEKWYP----------DE-RP 83 (124)
T ss_pred HHHHHHHHhhCeEEEEEecccccccccccccCCCcceeEEEEcCCCCEEEEEE-CCHHHHHhhhc----------cc-Cc
Confidence 35667777777777777555554 556667777899999 89998888776 12 56
Q ss_pred EEEeeccchhhc
Q 029886 68 VVPVPLNKVFQL 79 (186)
Q Consensus 68 V~~v~L~~vy~l 79 (186)
+..++...++++
T Consensus 84 ~~~~~~~~l~~~ 95 (124)
T PF07179_consen 84 IIVVPFEDLLEM 95 (124)
T ss_pred eecccHHHHHHH
Confidence 777888877776
No 11
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=69.20 E-value=5.4 Score=29.67 Aligned_cols=80 Identities=18% Similarity=0.204 Sum_probs=46.3
Q ss_pred CcEEEEEcCCCCeEEEEcCC-CCceEEEee---eCHHHHHHHHHHHHhcCcccccCCeEEEEeeccchhhc----cccCe
Q 029886 13 VPVYALSNCNEEFVLVSGAK-TGKSLGLMC---FKKEDAEALLHQMKSMDPAMRKEGSRVVPVPLNKVFQL----KVNGV 84 (186)
Q Consensus 13 VPVF~vtn~~g~p~l~~~~~-~~~~~~lFf---~~~~DA~~~L~~~k~~~p~~~~~~~kV~~v~L~~vy~l----~~~~~ 84 (186)
.|-|++++.+|..+..+.-. ++.++-+|| .++ -....+..+.+...++...|++|..|+.+....+ +..++
T Consensus 2 ~p~f~l~~~~g~~~~l~~~~~~~~~vl~f~~~~~Cp-~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~~~~~~~~~~~~~ 80 (149)
T cd02970 2 APDFELPDAGGETVTLSALLGEGPVVVVFYRGFGCP-FCREYLRALSKLLPELDALGVELVAVGPESPEKLEAFDKGKFL 80 (149)
T ss_pred CCCccccCCCCCEEchHHHhcCCCEEEEEECCCCCh-hHHHHHHHHHHHHHHHHhcCeEEEEEeCCCHHHHHHHHHhcCC
Confidence 68899999999988765432 344444442 122 1233334444334444333589999988766544 33456
Q ss_pred eEEEecCHH
Q 029886 85 AFRLIPEST 93 (186)
Q Consensus 85 ~f~~vP~~~ 93 (186)
.|.++-|+.
T Consensus 81 ~~p~~~D~~ 89 (149)
T cd02970 81 PFPVYADPD 89 (149)
T ss_pred CCeEEECCc
Confidence 677766643
No 12
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=61.87 E-value=10 Score=27.98 Aligned_cols=77 Identities=18% Similarity=0.237 Sum_probs=43.8
Q ss_pred CcEEEEEcCCCCeEEEEcCCCCceEEEeee------CHHHHHHHHHHHHhcCcccccCCeEEEEeeccchhhc----ccc
Q 029886 13 VPVYALSNCNEEFVLVSGAKTGKSLGLMCF------KKEDAEALLHQMKSMDPAMRKEGSRVVPVPLNKVFQL----KVN 82 (186)
Q Consensus 13 VPVF~vtn~~g~p~l~~~~~~~~~~~lFf~------~~~DA~~~L~~~k~~~p~~~~~~~kV~~v~L~~vy~l----~~~ 82 (186)
+|-|.++|.+|..+-.+.-.+..++=+||. +..++..+.+. .+++...|+.|..|+.+..-.+ +..
T Consensus 2 ~p~f~l~~~~g~~~~l~~~~gk~~ll~f~~~~~c~~C~~~~~~l~~~----~~~~~~~~~~~i~is~d~~~~~~~~~~~~ 77 (140)
T cd02971 2 APDFTLPATDGGEVSLSDFKGKWVVLFFYPKDFTPVCTTELCAFRDL----AEEFAKGGAEVLGVSVDSPFSHKAWAEKE 77 (140)
T ss_pred CCCceeccCCCcEEehHHhCCCeEEEEEeCCCCCCcCHHHHHHHHHH----HHHHHHCCCEEEEEeCCCHHHHHHHHhcc
Confidence 588999999999988776544444444421 34443333322 2232222488988887754433 222
Q ss_pred -CeeEEEecCHH
Q 029886 83 -GVAFRLIPEST 93 (186)
Q Consensus 83 -~~~f~~vP~~~ 93 (186)
+..|.++-|..
T Consensus 78 ~~~~~~~l~D~~ 89 (140)
T cd02971 78 GGLNFPLLSDPD 89 (140)
T ss_pred cCCCceEEECCC
Confidence 55566666554
No 13
>COG3691 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=61.09 E-value=25 Score=26.15 Aligned_cols=46 Identities=13% Similarity=0.102 Sum_probs=29.1
Q ss_pred CceEEEeeeCHHHHHHHHHHHHhcCcccccCC--eEEEEeeccchhhc
Q 029886 34 GKSLGLMCFKKEDAEALLHQMKSMDPAMRKEG--SRVVPVPLNKVFQL 79 (186)
Q Consensus 34 ~~~~~lFf~~~~DA~~~L~~~k~~~p~~~~~~--~kV~~v~L~~vy~l 79 (186)
...+..||=++.+|+++|+.+.+.-...-+.+ +.-...+++.-++|
T Consensus 31 t~~~s~~~as~a~ae~~La~lt~kAr~veSepc~I~~ei~~vedgv~L 78 (98)
T COG3691 31 TAEYSRFFATRAEAEEALAALTEKARAVESEPCEIEYEITDVEDGVEL 78 (98)
T ss_pred eEEEEEEecCHHHHHHHHHHHHHHHHhhccCcceeeeeeEeccCcEEE
Confidence 45677776899999999999987544333311 33334445555555
No 14
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=59.93 E-value=11 Score=28.76 Aligned_cols=77 Identities=18% Similarity=0.209 Sum_probs=45.1
Q ss_pred CCcEEEEEcCCCCeEEEEcCCCCceEEEee------eCHHHHHHHHHHHHhcCcccccCCeEEEEeeccchhhc----cc
Q 029886 12 GVPVYALSNCNEEFVLVSGAKTGKSLGLMC------FKKEDAEALLHQMKSMDPAMRKEGSRVVPVPLNKVFQL----KV 81 (186)
Q Consensus 12 ~VPVF~vtn~~g~p~l~~~~~~~~~~~lFf------~~~~DA~~~L~~~k~~~p~~~~~~~kV~~v~L~~vy~l----~~ 81 (186)
..|-|.++|.+|+.+-...-.+..++=.|| .+......+ +++ ..+++..|++|..|+.+....+ +.
T Consensus 9 ~~p~f~l~~~~G~~~~l~~~~gk~~ll~f~~~~~~p~C~~~~~~l-~~~---~~~~~~~~v~vi~Is~d~~~~~~~~~~~ 84 (154)
T PRK09437 9 IAPKFSLPDQDGEQVSLTDFQGQRVLVYFYPKAMTPGCTVQACGL-RDN---MDELKKAGVVVLGISTDKPEKLSRFAEK 84 (154)
T ss_pred cCCCcEeeCCCCCEEeHHHhCCCCEEEEEECCCCCCchHHHHHHH-HHH---HHHHHHCCCEEEEEcCCCHHHHHHHHHH
Confidence 478999999999987765544433333331 134433332 222 2233333589999998866555 34
Q ss_pred cCeeEEEecCH
Q 029886 82 NGVAFRLIPES 92 (186)
Q Consensus 82 ~~~~f~~vP~~ 92 (186)
.++.|.++-+.
T Consensus 85 ~~~~~~~l~D~ 95 (154)
T PRK09437 85 ELLNFTLLSDE 95 (154)
T ss_pred hCCCCeEEECC
Confidence 46677777654
No 15
>PRK15339 type III secretion system outer membrane pore InvG; Provisional
Probab=56.83 E-value=59 Score=31.21 Aligned_cols=119 Identities=12% Similarity=0.133 Sum_probs=63.2
Q ss_pred cCCCCeEEEEcCCC-CceEEEeeeCHHHHHHHHHHHHhcCcccccCCeEEEEeeccchhhc-cccCe-eEEEecCHHHHH
Q 029886 20 NCNEEFVLVSGAKT-GKSLGLMCFKKEDAEALLHQMKSMDPAMRKEGSRVVPVPLNKVFQL-KVNGV-AFRLIPESTQVK 96 (186)
Q Consensus 20 n~~g~p~l~~~~~~-~~~~~lFf~~~~DA~~~L~~~k~~~p~~~~~~~kV~~v~L~~vy~l-~~~~~-~f~~vP~~~qv~ 96 (186)
...|-|++++..-. +.+.|=| +.+.+++||++|....- ..-.-=|.+.-. +.+.+ .-.+-++....+
T Consensus 50 ~~~g~pvivs~~v~~~~vsG~f--~~~~P~~~L~~La~~~~--------l~WY~DG~~Lyvy~~~e~~s~~i~l~~~s~~ 119 (559)
T PRK15339 50 SQLKKPVIVSKLAARKQISGNF--DLHDPNALLEKLSLQLG--------LIWYFDGQAIYIYDASEMRNAVVSLRNVSLN 119 (559)
T ss_pred HhcCCCEEECCccccceEEEEe--CCCCHHHHHHHHHHHhC--------cEEEecCCEEEEEcchheEEEEEecCCCCHH
Confidence 34577788886433 6688887 77889999999976532 222222222111 12222 222333344455
Q ss_pred HHHHHHHHcCCCCCCC-------------CCccchHHHHHHHHHHHhhhhcccCCCCccCceEEEeH
Q 029886 97 NALREMEKAGFSDDAF-------------AGVPVFQEDLEKSLRRASSDQNKLNPAFRMGDIQVAVF 150 (186)
Q Consensus 97 ~A~~l~~~~g~~~~~f-------------~GVPlF~edl~~~l~~~~~~~~~~~P~~~~~~I~V~~L 150 (186)
..+..+++.|.-..-| .|.|.|.+...++...+-++... .......|.|++|
T Consensus 120 ~l~~~L~~~gl~D~r~~~r~~~~~~~v~VsGPp~yvelV~~~a~~ld~~~~~--~~~~~~~v~vfpL 184 (559)
T PRK15339 120 EFNNFLKRSGLYNKRYPLRGDNRKGTFYVSGPPVYVDLVVNAATLMDKQNDG--IELGRQKIGVIRL 184 (559)
T ss_pred HHHHHHHHcCCcCCCCceeECCCCCEEEEECCHHHHHHHHHHHHhhhhhhhh--cccCceEEEEEEE
Confidence 5566666666521122 47899997766666655443311 1111345666654
No 16
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=53.65 E-value=13 Score=27.51 Aligned_cols=77 Identities=17% Similarity=0.239 Sum_probs=41.8
Q ss_pred CCcEEEEEcCCCCeEEEEcCCCCceEEEeee------CHHHHHHHHHHHHhcCcccccCCeEEEEeeccchhhc----cc
Q 029886 12 GVPVYALSNCNEEFVLVSGAKTGKSLGLMCF------KKEDAEALLHQMKSMDPAMRKEGSRVVPVPLNKVFQL----KV 81 (186)
Q Consensus 12 ~VPVF~vtn~~g~p~l~~~~~~~~~~~lFf~------~~~DA~~~L~~~k~~~p~~~~~~~kV~~v~L~~vy~l----~~ 81 (186)
..|=|.+++.+|..+-...-.+..++-+||. +......+ .++. ..+...|+.|..|+.+..-++ +.
T Consensus 2 ~~p~f~l~~~~g~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l-~~~~---~~~~~~~~~vv~is~d~~~~~~~~~~~ 77 (140)
T cd03017 2 KAPDFTLPDQDGETVSLSDLRGKPVVLYFYPKDDTPGCTKEACDF-RDLY---EEFKALGAVVIGVSPDSVESHAKFAEK 77 (140)
T ss_pred CCCCccccCCCCCEEeHHHhCCCcEEEEEeCCCCCCchHHHHHHH-HHHH---HHHHHCCCEEEEEcCCCHHHHHHHHHH
Confidence 4688999999999887765554433333421 33333332 2222 222222488888887654433 22
Q ss_pred cCeeEEEecCH
Q 029886 82 NGVAFRLIPES 92 (186)
Q Consensus 82 ~~~~f~~vP~~ 92 (186)
.++.|.++-|.
T Consensus 78 ~~~~~~~l~D~ 88 (140)
T cd03017 78 YGLPFPLLSDP 88 (140)
T ss_pred hCCCceEEECC
Confidence 34445555443
No 17
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=51.59 E-value=40 Score=26.43 Aligned_cols=75 Identities=8% Similarity=0.104 Sum_probs=47.1
Q ss_pred CCcEEEEEcCCCCeEEEEcCCCCceEEEee------eCHHHHHHHHHHHHhcCcccccCCeEEEEeeccchhhc----cc
Q 029886 12 GVPVYALSNCNEEFVLVSGAKTGKSLGLMC------FKKEDAEALLHQMKSMDPAMRKEGSRVVPVPLNKVFQL----KV 81 (186)
Q Consensus 12 ~VPVF~vtn~~g~p~l~~~~~~~~~~~lFf------~~~~DA~~~L~~~k~~~p~~~~~~~kV~~v~L~~vy~l----~~ 81 (186)
..|-|++.+.+|..+-.+.-.|..++=.|| -+..++-++-+.. . +. .+ ++|..|+.+..+.+ +.
T Consensus 23 ~~P~f~l~~~~g~~v~l~~~~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~-~---~~-~~-~~vv~vs~D~~~~~~~f~~~ 96 (167)
T PRK00522 23 KAPDFTLVANDLSDVSLADFAGKRKVLNIFPSIDTGVCATSVRKFNQEA-A---EL-DN-TVVLCISADLPFAQKRFCGA 96 (167)
T ss_pred CCCCeEEEcCCCcEEehHHhCCCEEEEEEEcCCCCCccHHHHHHHHHHH-H---Hc-CC-cEEEEEeCCCHHHHHHHHHh
Confidence 479999999999987766544443333331 1455555544332 2 22 24 89999999987665 34
Q ss_pred cCee-EEEecCH
Q 029886 82 NGVA-FRLIPES 92 (186)
Q Consensus 82 ~~~~-f~~vP~~ 92 (186)
.++. |.++.|.
T Consensus 97 ~~~~~~~~lsD~ 108 (167)
T PRK00522 97 EGLENVITLSDF 108 (167)
T ss_pred CCCCCceEeecC
Confidence 4554 7788774
No 18
>PF04392 ABC_sub_bind: ABC transporter substrate binding protein; InterPro: IPR007487 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. This family contains many hypothetical proteins and some ABC transporter substrate binding proteins.; PDB: 3LFT_A 3LKV_A.
Probab=49.63 E-value=1.1e+02 Score=26.02 Aligned_cols=55 Identities=18% Similarity=0.198 Sum_probs=29.0
Q ss_pred HHHHhcCC-CcEEEEE--cCCCCeEEEEcCC-CCceEEEeeeCHHHHHHHHHHHHhcCccc
Q 029886 5 AIEERLAG-VPVYALS--NCNEEFVLVSGAK-TGKSLGLMCFKKEDAEALLHQMKSMDPAM 61 (186)
Q Consensus 5 ~I~ekL~~-VPVF~vt--n~~g~p~l~~~~~-~~~~~~lFf~~~~DA~~~L~~~k~~~p~~ 61 (186)
.+.+.+.. +||++.. |..+..++-+... +..++|+. +..+....++-+++-.|++
T Consensus 73 ~~~~~~~~~iPVVf~~V~dp~~~~l~~~~~~~~~nvTGv~--~~~~~~~~l~l~~~l~P~~ 131 (294)
T PF04392_consen 73 ALAKHLKDDIPVVFCGVSDPVGAGLVDSLDRPGKNVTGVS--ERPPIEKQLELIKKLFPDA 131 (294)
T ss_dssp HHHHH-SS-S-EEEECES-TTTTTS-S-SSS--SSEEEEE--E---HHHHHHHHHHHSTT-
T ss_pred HHHHhcCCCcEEEEEeccChhhhhccccccCCCCCEEEEE--CCcCHHHHHHHHHHhCCCC
Confidence 45677778 9985543 6667766654332 24567776 5666677777776666753
No 19
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=49.23 E-value=83 Score=25.93 Aligned_cols=59 Identities=14% Similarity=0.175 Sum_probs=34.9
Q ss_pred EEEEEcCCCCeEEEEcCCCCceEEEeee------CHHHHHHHHHHHHhcCcccccCCeEEEEeecc
Q 029886 15 VYALSNCNEEFVLVSGAKTGKSLGLMCF------KKEDAEALLHQMKSMDPAMRKEGSRVVPVPLN 74 (186)
Q Consensus 15 VF~vtn~~g~p~l~~~~~~~~~~~lFf~------~~~DA~~~L~~~k~~~p~~~~~~~kV~~v~L~ 74 (186)
-|.++|.+|+++....-.|..++=+|.| ++..-..+..-+++-....+.. +++..|++|
T Consensus 49 ~f~l~d~~G~~~~~~~l~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~-v~vv~itvD 113 (207)
T COG1999 49 DFELTDQDGKPFTLKDLKGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDD-VQVVFITVD 113 (207)
T ss_pred ceeeecCCCCEeeccccCCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCC-EEEEEEEEC
Confidence 4899999999999887765544444432 4443333333333333122333 788888866
No 20
>PF02829 3H: 3H domain; InterPro: IPR004173 The 3H domain is named after its three highly conserved histidine residues. The 3H domain appears to be a small molecule-binding domain, based on its occurrence with other domains []. Several proteins carrying this domain are transcriptional regulators from the biotin repressor family. The transcription regulator TM1602 from Thermotoga maritima is a DNA-binding protein thought to belong to a family of de novo NAD synthesis pathway regulators. TM1602 has an N-terminal DNA-binding domain and a C-terminal 3H regulatory domain. The N-terminal domain appears to bind to the NAD promoter region and repress the de novo NAD biosynthesis operon, while the C-terminal 3H domain may bind to nicotinamide, nicotinic acid, or other substrate/products []. The 3H domain has a 2-layer alpha/beta sandwich fold.; GO: 0005488 binding; PDB: 1J5Y_A.
Probab=46.56 E-value=1.2e+02 Score=22.43 Aligned_cols=54 Identities=17% Similarity=0.322 Sum_probs=35.3
Q ss_pred EeeeCHHHHHHHHHHHHhcCcccccCCeEEEEeeccchhhccccCe--eEEEecCHHHHHHHHHHHHHcCC
Q 029886 39 LMCFKKEDAEALLHQMKSMDPAMRKEGSRVVPVPLNKVFQLKVNGV--AFRLIPESTQVKNALREMEKAGF 107 (186)
Q Consensus 39 lFf~~~~DA~~~L~~~k~~~p~~~~~~~kV~~v~L~~vy~l~~~~~--~f~~vP~~~qv~~A~~l~~~~g~ 107 (186)
|..-|+.|++.|++++++.+... .|.|. +|+ .---.|+.+.++.+.+-|++.|.
T Consensus 41 L~i~sr~Dv~~Fi~~l~~~~~~~--------------Ls~LT-~GvH~HtI~a~~~e~l~~I~~~L~~~G~ 96 (98)
T PF02829_consen 41 LNISSRRDVDKFIEKLEKSKAKP--------------LSSLT-GGVHYHTIEAPDEEDLDKIEEALKKKGF 96 (98)
T ss_dssp EEE-SHHHHHHHHHHHHH--S----------------STTGG-GGEEEEEEEESSHHHHHHHHHHHHHTT-
T ss_pred EecCCHHHHHHHHHHHhccCCcc--------------hHHhc-CCEeeEEEEECCHHHHHHHHHHHHHCCC
Confidence 44459999999999998864221 12222 233 23357999999999999998874
No 21
>PF10882 bPH_5: Bacterial PH domain; InterPro: IPR020482 This entry contains membrane proteins with no known function.
Probab=46.15 E-value=38 Score=24.07 Aligned_cols=38 Identities=18% Similarity=0.322 Sum_probs=24.6
Q ss_pred EEEEEcCCCCeEEEEcCCCCceEEEeeeCHHHHHHHHHHHHhc
Q 029886 15 VYALSNCNEEFVLVSGAKTGKSLGLMCFKKEDAEALLHQMKSM 57 (186)
Q Consensus 15 VF~vtn~~g~p~l~~~~~~~~~~~lFf~~~~DA~~~L~~~k~~ 57 (186)
+++.++.....+++...+ . .++ +|++|.+.|++.++++
T Consensus 62 ~~~y~t~~~~~i~I~t~~-~---~y~-isp~~~~~fi~~l~~r 99 (100)
T PF10882_consen 62 VRLYATRNKNVILIKTKD-K---TYV-ISPEDPEEFIEALKKR 99 (100)
T ss_pred EEEEEECCCCEEEEEECC-c---eEE-EcCCCHHHHHHHHHhc
Confidence 444444455555555443 2 233 7999999999999875
No 22
>cd06578 HemD Uroporphyrinogen-III synthase (HemD) catalyzes the asymmetrical cyclization of tetrapyrrole (linear) to uroporphyrinogen-III, the fourth step in the biosynthesis of heme. This ubiquitous enzyme is present in eukaryotes, bacteria and archaea. Mutations in the human uroporphyrinogen-III synthase gene cause congenital erythropoietic porphyria, a recessive inborn error of metabolism also known as Gunther disease.
Probab=42.84 E-value=1.3e+02 Score=23.75 Aligned_cols=88 Identities=18% Similarity=0.254 Sum_probs=56.9
Q ss_pred ceEEEeeeCHHHHHHHHHHHHhcCcccccCCeEEEEeeccchhhccccCeeEEEecCHHHHHHHHHHHHHcCCCCCCCCC
Q 029886 35 KSLGLMCFKKEDAEALLHQMKSMDPAMRKEGSRVVPVPLNKVFQLKVNGVAFRLIPESTQVKNALREMEKAGFSDDAFAG 114 (186)
Q Consensus 35 ~~~~lFf~~~~DA~~~L~~~k~~~p~~~~~~~kV~~v~L~~vy~l~~~~~~f~~vP~~~qv~~A~~l~~~~g~~~~~f~G 114 (186)
..-.+.|+|+.-++.+.+.++...+....+ .++.+++=..+-.+...|..-.++|+....+...+++.+. ...|
T Consensus 49 ~~~~iiftS~~av~~~~~~~~~~~~~~~~~-~~~~avG~~Ta~~l~~~g~~~~~~~~~~~~~~L~~~i~~~-----~~~~ 122 (239)
T cd06578 49 EYDWLIFTSPNAVEAFFEALEELGLRALAG-LKIAAVGPKTAEALREAGLTADFVPEEGDSEGLLELLELQ-----DGKG 122 (239)
T ss_pred CCCEEEEECHHHHHHHHHHHHhhCCccccC-CEEEEECHHHHHHHHHcCCCceeCCCccCHHHHHHHHHhc-----CCCC
Confidence 345566689999999999988765444445 7777776555555666777666777766666666666554 1235
Q ss_pred ccchH-------HHHHHHHHH
Q 029886 115 VPVFQ-------EDLEKSLRR 128 (186)
Q Consensus 115 VPlF~-------edl~~~l~~ 128 (186)
-++.+ .+|...|.+
T Consensus 123 ~~il~~~g~~~~~~l~~~L~~ 143 (239)
T cd06578 123 KRILRPRGGRAREDLAEALRE 143 (239)
T ss_pred CEEEEEcCcchhHHHHHHHHH
Confidence 56555 455555543
No 23
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=38.59 E-value=53 Score=24.40 Aligned_cols=64 Identities=17% Similarity=0.248 Sum_probs=34.7
Q ss_pred CCCcEEEEEcCCCCeEEEEcCCCCceEEEeee----CHHHHHHHHHHHHhcCcccccCCeEEEEeeccc
Q 029886 11 AGVPVYALSNCNEEFVLVSGAKTGKSLGLMCF----KKEDAEALLHQMKSMDPAMRKEGSRVVPVPLNK 75 (186)
Q Consensus 11 ~~VPVF~vtn~~g~p~l~~~~~~~~~~~lFf~----~~~DA~~~L~~~k~~~p~~~~~~~kV~~v~L~~ 75 (186)
..+|-|.+++.+|..+-.+.-.+.+.+=++|+ ++- ....+.++++...++.+.|++|..|+.+.
T Consensus 5 ~~~p~~~l~~~~g~~v~l~~~~g~k~~vl~f~~~~~c~~-C~~~~~~l~~~~~~~~~~~v~vi~vs~d~ 72 (149)
T cd03018 5 DKAPDFELPDQNGQEVRLSEFRGRKPVVLVFFPLAFTPV-CTKELCALRDSLELFEAAGAEVLGISVDS 72 (149)
T ss_pred CcCCCcEecCCCCCEEeHHHHcCCCeEEEEEeCCCCCcc-HHHHHHHHHHHHHHHHhCCCEEEEecCCC
Confidence 35788999999999887765444233333323 111 12223333332333333348888888664
No 24
>COG4669 EscJ Type III secretory pathway, lipoprotein EscJ [Intracellular trafficking and secretion]
Probab=38.09 E-value=1.6e+02 Score=25.50 Aligned_cols=57 Identities=16% Similarity=0.321 Sum_probs=37.7
Q ss_pred eCHHHHHHHHHHHHhcCcccccCCeEEEEeeccchhhccccCeeEEEecCHHHHHHHHHHHHHcCCCCCCCC
Q 029886 42 FKKEDAEALLHQMKSMDPAMRKEGSRVVPVPLNKVFQLKVNGVAFRLIPESTQVKNALREMEKAGFSDDAFA 113 (186)
Q Consensus 42 ~~~~DA~~~L~~~k~~~p~~~~~~~kV~~v~L~~vy~l~~~~~~f~~vP~~~qv~~A~~l~~~~g~~~~~f~ 113 (186)
++.+||+.+|+-+..++=+.. |+ ..++| .+.+.=++.++.+|.++++.+|.+...|-
T Consensus 28 L~e~eANemlAlL~~~gI~A~----K~----------~~~~g-~~~l~Ve~~~fa~Av~iL~~~GlPr~~f~ 84 (246)
T COG4669 28 LSEKEANEMLALLMSHGINAE----KK----------ADKDG-GTSLLVEESDFAEAVEILNQNGLPRKKFT 84 (246)
T ss_pred CCHhHHHHHHHHHHHcCCcce----ee----------ccCCC-ceEEEEcHHHHHHHHHHHHhcCCCCCCCC
Confidence 588999999999887642211 11 01111 22244457899999999999998776663
No 25
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=36.60 E-value=96 Score=24.04 Aligned_cols=83 Identities=17% Similarity=0.188 Sum_probs=52.1
Q ss_pred CCcEEEEEcCC---CCeEEEEc-CCCCceEEEeee-------CHHH-HHHHHHHHHhcCcccccCCe-EEEEeeccchhh
Q 029886 12 GVPVYALSNCN---EEFVLVSG-AKTGKSLGLMCF-------KKED-AEALLHQMKSMDPAMRKEGS-RVVPVPLNKVFQ 78 (186)
Q Consensus 12 ~VPVF~vtn~~---g~p~l~~~-~~~~~~~~lFf~-------~~~D-A~~~L~~~k~~~p~~~~~~~-kV~~v~L~~vy~ 78 (186)
..|-|++.+.. |..+-.+. -.++.++=+| + +..+ +.+|-+.+ +++.+.|+ .|..+|-+..+.
T Consensus 4 ~aPdF~l~~~~~~~g~~v~L~~~~~gk~vvl~f-yP~~~tp~Ct~e~~~~~~~~~----~~f~~~g~~~V~~iS~D~~~~ 78 (155)
T cd03013 4 KLPNVTLFEYVPGPPNPVNLSELFKGKKVVIFG-VPGAFTPTCSAQHLPGYVENA----DELKAKGVDEVICVSVNDPFV 78 (155)
T ss_pred cCCCeEeeeeccCCCceeeHHHHhCCCcEEEEE-eCCCCCCCCchhHHHHHHHhH----HHHHHCCCCEEEEEECCCHHH
Confidence 47889988774 77766665 2444444333 3 3445 66655544 34433357 599999999998
Q ss_pred c----cccCe--eEEEecCHHHHHHHHH
Q 029886 79 L----KVNGV--AFRLIPESTQVKNALR 100 (186)
Q Consensus 79 l----~~~~~--~f~~vP~~~qv~~A~~ 100 (186)
+ +..++ .|.++.|.. -+.|+.
T Consensus 79 ~~~~~~~~~~~~~f~lLsD~~-~~~~~~ 105 (155)
T cd03013 79 MKAWGKALGAKDKIRFLADGN-GEFTKA 105 (155)
T ss_pred HHHHHHhhCCCCcEEEEECCC-HHHHHH
Confidence 7 34455 799999863 344443
No 26
>PF11943 DUF3460: Protein of unknown function (DUF3460); InterPro: IPR021853 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 70 amino acids in length. This protein has a conserved WDK sequence motif.
Probab=35.94 E-value=28 Score=23.66 Aligned_cols=19 Identities=21% Similarity=0.529 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHhcCcccc
Q 029886 44 KEDAEALLHQMKSMDPAMR 62 (186)
Q Consensus 44 ~~DA~~~L~~~k~~~p~~~ 62 (186)
..|+-.||+++|..+|++.
T Consensus 4 ~Se~TqFl~~lk~~~Pele 22 (60)
T PF11943_consen 4 QSEITQFLNQLKAKHPELE 22 (60)
T ss_pred cCHHHHHHHHHHHhCCchH
Confidence 4588999999999999873
No 27
>PF12164 SporV_AA: Stage V sporulation protein AA; InterPro: IPR021997 This domain family is found in bacteria - primarily Firmicutes, and is approximately 90 amino acids in length. There is a single completely conserved residue G that may be functionally important. Most annotation associated with this domain suggests that it is involved in the fifth stage of sporulation, however there is little publication to back this up. ; PDB: 3G74_B.
Probab=35.55 E-value=32 Score=25.09 Aligned_cols=46 Identities=15% Similarity=0.399 Sum_probs=28.8
Q ss_pred HHHHhcCCCcEEEEEcCCCCeEEEEcCCCCceEEEeeeCHHHHHHHHHHHHhcCcccccCCeEEEEee
Q 029886 5 AIEERLAGVPVYALSNCNEEFVLVSGAKTGKSLGLMCFKKEDAEALLHQMKSMDPAMRKEGSRVVPVP 72 (186)
Q Consensus 5 ~I~ekL~~VPVF~vtn~~g~p~l~~~~~~~~~~~lFf~~~~DA~~~L~~~k~~~p~~~~~~~kV~~v~ 72 (186)
++.++|...|+|.++..++.-++++ +-..++.+++..|+ +.|+.++
T Consensus 34 ~~~~klk~l~i~~~~~~d~~r~Vis-----------------vm~II~~I~~~~p~-----l~I~~iG 79 (93)
T PF12164_consen 34 EIENKLKALPIYKIKKKDKNRYVIS-----------------VMKIIEKIQEEYPN-----LDIQNIG 79 (93)
T ss_dssp HHHHHHHTSEEEE-BTTT--EEEEE-----------------HHHHHHHHHHH-SS-----EEEEE-S
T ss_pred HHHHHhhccEeeeecCCCCCEEEEE-----------------HHHHHHHHHHHCCC-----cEEEEcC
Confidence 7899999999999987776655544 34556666666775 4555443
No 28
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=34.52 E-value=61 Score=24.70 Aligned_cols=59 Identities=19% Similarity=0.122 Sum_probs=33.2
Q ss_pred CCcEEEEEcCCCCeEEEEcCCCCceEEEeee----CHHHHHHHHHHHHhcCcccccCCeEEEEeecc
Q 029886 12 GVPVYALSNCNEEFVLVSGAKTGKSLGLMCF----KKEDAEALLHQMKSMDPAMRKEGSRVVPVPLN 74 (186)
Q Consensus 12 ~VPVF~vtn~~g~p~l~~~~~~~~~~~lFf~----~~~DA~~~L~~~k~~~p~~~~~~~kV~~v~L~ 74 (186)
.+|-|.++|.+|..+-.+.-.|..++-.|+. +..+.. .|+++.++ +++.|+.|..|+.+
T Consensus 1 ~~~~f~l~d~~G~~v~l~~~~Gk~vvl~fwatwC~C~~e~p-~l~~l~~~---~~~~~~~vv~v~~~ 63 (152)
T cd00340 1 SIYDFSVKDIDGEPVSLSKYKGKVLLIVNVASKCGFTPQYE-GLEALYEK---YKDRGLVVLGFPCN 63 (152)
T ss_pred CcceeEEECCCCCEEeHHHhCCCEEEEEEEcCCCCchHHHH-HHHHHHHH---hcCCCEEEEEeccC
Confidence 3788999999999877665454433333311 333333 34444333 33235888777754
No 29
>TIGR00743 conserved hypothetical protein. These small proteins are approximately 100 amino acids in length and appear to be found only in gamma proteobacteria. The function of this protein family is unknown.
Probab=34.05 E-value=1.5e+02 Score=21.90 Aligned_cols=54 Identities=15% Similarity=0.223 Sum_probs=31.5
Q ss_pred ceEEEeeeCHHHHHHHHHHHHhcCcccccC--CeEEEEeeccchhhc--------cccCeeEEE
Q 029886 35 KSLGLMCFKKEDAEALLHQMKSMDPAMRKE--GSRVVPVPLNKVFQL--------KVNGVAFRL 88 (186)
Q Consensus 35 ~~~~lFf~~~~DA~~~L~~~k~~~p~~~~~--~~kV~~v~L~~vy~l--------~~~~~~f~~ 88 (186)
-.+.++|=++++|+++|+.+...-....+. .++-...+.+.-++| ..+.+.|++
T Consensus 29 a~~~~~~~~~~~Ae~~l~~l~ekAk~vesepc~I~~~i~~~e~g~~L~a~F~FsCqAEklIFQL 92 (95)
T TIGR00743 29 SKFSRFFATRAEAESFLAKLTEKARAVESEPCEIASEITDVEDGVELDADFTFSCQAEMIIFEL 92 (95)
T ss_pred EEEEEEeCCHHHHHHHHHHHHHHHHHhhcCCceeEEEEEEcCCcEEEEEEEEEEEEeeeEEEEe
Confidence 456667689999999999876532222221 133333344666666 245566654
No 30
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=34.00 E-value=1.1e+02 Score=24.32 Aligned_cols=24 Identities=21% Similarity=0.261 Sum_probs=17.6
Q ss_pred CCCcEEEEEcCCCCeEEEEcCCCC
Q 029886 11 AGVPVYALSNCNEEFVLVSGAKTG 34 (186)
Q Consensus 11 ~~VPVF~vtn~~g~p~l~~~~~~~ 34 (186)
..+|-|.++|.+|..+-...-.|.
T Consensus 30 ~~~~~f~L~d~~G~~~~~~~~~Gk 53 (174)
T PF02630_consen 30 RIVPDFTLTDQDGKTVTLDDLKGK 53 (174)
T ss_dssp CSSST-EEEETTSSEEEGGGGTTS
T ss_pred ccCCCcEEEcCCCCEecHHHhCCC
Confidence 347789999999999887655544
No 31
>TIGR02544 III_secr_YscJ type III secretion apparatus lipoprotein, YscJ/HrcJ family. All members of this protein family are predicted lipoproteins with a conserved Cys near the N-terminus for cleavage and modification, and are part of known or predicted type III secretion systems. Members are found in both plant and animal pathogens, including the obligately intracellular chlamydial species and (non-pathogenic) root nodule bacteria. The most closely related proteins outside this family are examples of the flagellar M-ring protein FliF.
Probab=33.16 E-value=2.7e+02 Score=22.77 Aligned_cols=56 Identities=13% Similarity=0.185 Sum_probs=34.8
Q ss_pred eCHHHHHHHHHHHHhcCcccccCCeEEEEeeccchhhccccCeeEEEecCHHHHHHHHHHHHHcCCCCCCC
Q 029886 42 FKKEDAEALLHQMKSMDPAMRKEGSRVVPVPLNKVFQLKVNGVAFRLIPESTQVKNALREMEKAGFSDDAF 112 (186)
Q Consensus 42 ~~~~DA~~~L~~~k~~~p~~~~~~~kV~~v~L~~vy~l~~~~~~f~~vP~~~qv~~A~~l~~~~g~~~~~f 112 (186)
++.+||.+.++.+..++=. +++... ..+| .--+||. +++..|+.++..+|....++
T Consensus 26 L~~~da~~I~~~L~~~gI~-----y~~~~~--------~~~g-~~I~Vp~-~~~~~ar~~La~~glp~~~~ 81 (193)
T TIGR02544 26 LSEREANEMLAVLMRHGID-----AEKEGS--------GKGG-YTISVEE-SDFARAVELLRQYGLPRQRF 81 (193)
T ss_pred CCHHHHHHHHHHHHHCCCC-----eEEeec--------CCCC-eEEEEcH-HHHHHHHHHHHHcCCCCCCC
Confidence 6899999999999876311 222100 1112 1125554 47888999999998755443
No 32
>PF06058 DCP1: Dcp1-like decapping family; InterPro: IPR010334 An essential step in mRNA turnover is decapping. In yeast, two proteins have been identified that are essential for decapping, Dcp1 (this family) and Dcp2 (IPR007722 from INTERPRO). The precise role of these proteins in the decapping reaction has not been established. Evidence suggests that the Dcp1 may enhance the function of Dcp2 [].; PDB: 1Q67_A 2QKM_C 2QKL_A.
Probab=32.78 E-value=95 Score=23.66 Aligned_cols=24 Identities=13% Similarity=0.389 Sum_probs=20.2
Q ss_pred CCceEEEeeeCHHHHHHHHHHHHh
Q 029886 33 TGKSLGLMCFKKEDAEALLHQMKS 56 (186)
Q Consensus 33 ~~~~~~lFf~~~~DA~~~L~~~k~ 56 (186)
++.+.|+.|++.+|.+...+-++.
T Consensus 97 ~~~I~GiWf~~~~d~~ri~~~l~~ 120 (122)
T PF06058_consen 97 NQEIYGIWFYDDEDRQRIYNLLQR 120 (122)
T ss_dssp TTEEEEEEESSHHHHHHHHHHHHH
T ss_pred CceEEEEEEEeHHHHHHHHHHHHh
Confidence 358999999999999998887753
No 33
>PF07862 Nif11: Nitrogen fixation protein of unknown function; InterPro: IPR012903 This domain is found in the cyanobacteria, and the nitrogen-fixing proteobacterium Azotobacter vinelandii and may be involved in nitrogen fixation, but no role has been assigned [].
Probab=32.70 E-value=17 Score=22.92 Aligned_cols=22 Identities=32% Similarity=0.608 Sum_probs=18.2
Q ss_pred eCHHHHHHHHHHHHhcCcccccC
Q 029886 42 FKKEDAEALLHQMKSMDPAMRKE 64 (186)
Q Consensus 42 ~~~~DA~~~L~~~k~~~p~~~~~ 64 (186)
||.+++++|++.++ .+|+++..
T Consensus 1 MS~~~l~~Fl~~~~-~d~~l~~~ 22 (49)
T PF07862_consen 1 MSIESLKAFLEKVK-SDPELREQ 22 (49)
T ss_pred CCHHHHHHHHHHHh-cCHHHHHH
Confidence 68999999999995 56888655
No 34
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=32.57 E-value=53 Score=26.68 Aligned_cols=77 Identities=10% Similarity=0.149 Sum_probs=45.5
Q ss_pred CCcEEEEEcCCCCeEEEEcCCCCceEEEeee-------CHHHHHHHHHHHHhcCcccccCCeEEEEeeccchhhcc----
Q 029886 12 GVPVYALSNCNEEFVLVSGAKTGKSLGLMCF-------KKEDAEALLHQMKSMDPAMRKEGSRVVPVPLNKVFQLK---- 80 (186)
Q Consensus 12 ~VPVF~vtn~~g~p~l~~~~~~~~~~~lFf~-------~~~DA~~~L~~~k~~~p~~~~~~~kV~~v~L~~vy~l~---- 80 (186)
..|-|.+.+..|. +-.+.-.+++.+=|||+ +..+..++-+. .+++.+.|++|..|+.+.....+
T Consensus 4 ~aP~F~~~~~~g~-~~l~d~~g~k~vvlf~~pa~~cp~C~~el~~l~~~----~~~f~~~gv~vigvS~D~~~~~~~~~~ 78 (203)
T cd03016 4 TAPNFEADTTHGP-IKFHDYLGDSWGILFSHPADFTPVCTTELGAFAKL----APEFKKRNVKLIGLSVDSVESHIKWIE 78 (203)
T ss_pred CCCCeEEecCCCc-EeHHHHcCCCEEEEEEecCCCCCcCHHHHHHHHHH----HHHHHHcCCEEEEEECCCHHHHHHHHh
Confidence 4789999988875 33333233233333323 45544443322 33443335999999999876541
Q ss_pred ------ccCeeEEEecCHH
Q 029886 81 ------VNGVAFRLIPEST 93 (186)
Q Consensus 81 ------~~~~~f~~vP~~~ 93 (186)
..++.|.++.|+.
T Consensus 79 ~i~~~~~~~~~fpil~D~~ 97 (203)
T cd03016 79 DIEEYTGVEIPFPIIADPD 97 (203)
T ss_pred hHHHhcCCCCceeEEECch
Confidence 1478899998864
No 35
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=31.52 E-value=45 Score=24.53 Aligned_cols=80 Identities=16% Similarity=0.147 Sum_probs=41.2
Q ss_pred CcEEEEEcCCCCeEEEEcCCCCceEEEeeeCHH---HHHHHHHHHHhcCcccccC---CeEEEEeeccch----hhc---
Q 029886 13 VPVYALSNCNEEFVLVSGAKTGKSLGLMCFKKE---DAEALLHQMKSMDPAMRKE---GSRVVPVPLNKV----FQL--- 79 (186)
Q Consensus 13 VPVF~vtn~~g~p~l~~~~~~~~~~~lFf~~~~---DA~~~L~~~k~~~p~~~~~---~~kV~~v~L~~v----y~l--- 79 (186)
.|-|++.+.+|..+-...-. ++.+-++|+... -....+..+++...++... +++|..|+.+.- -.+
T Consensus 2 ~p~f~l~~~~g~~~~l~~~~-gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~~~d~~~~~~~~ 80 (142)
T cd02968 2 GPDFTLTDQDGRPVTLSDLK-GKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDPERDTPEVLKAY 80 (142)
T ss_pred CCceEEEcCCCCEEchHHhC-CCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECCCCCCHHHHHHH
Confidence 68899999999887655443 444445532111 0222333333222222221 288888887532 112
Q ss_pred -cccCeeEEEecCHH
Q 029886 80 -KVNGVAFRLIPEST 93 (186)
Q Consensus 80 -~~~~~~f~~vP~~~ 93 (186)
+..+..|.++.+..
T Consensus 81 ~~~~~~~~~~l~~~~ 95 (142)
T cd02968 81 AKAFGPGWIGLTGTP 95 (142)
T ss_pred HHHhCCCcEEEECCH
Confidence 23345677776643
No 36
>KOG0855 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=31.20 E-value=1.2e+02 Score=25.22 Aligned_cols=97 Identities=14% Similarity=0.326 Sum_probs=59.7
Q ss_pred CCCcEEEEEcCCCCeEEEEcCCCCceEEEeee-------CHHHHHHHHHHHHhcCcccccCCeEEEEeeccchhhc----
Q 029886 11 AGVPVYALSNCNEEFVLVSGAKTGKSLGLMCF-------KKEDAEALLHQMKSMDPAMRKEGSRVVPVPLNKVFQL---- 79 (186)
Q Consensus 11 ~~VPVF~vtn~~g~p~l~~~~~~~~~~~lFf~-------~~~DA~~~L~~~k~~~p~~~~~~~kV~~v~L~~vy~l---- 79 (186)
+.+|=|++.|.+|.++-...-.+.+.+-+||. +-.+|=+|-+.. +++.+.|+.|.-++-|..-..
T Consensus 67 d~iPD~tL~dedg~sisLkkit~nk~vV~f~YP~asTPGCTkQaCgFRDnY----~k~kka~aeV~GlS~D~s~sqKaF~ 142 (211)
T KOG0855|consen 67 DAIPDFTLKDEDGKSISLKKITGNKPVVLFFYPAASTPGCTKQACGFRDNY----EKFKKAGAEVIGLSGDDSASQKAFA 142 (211)
T ss_pred CcCCCcccccCCCCeeeeeeecCCCcEEEEEeccCCCCCcccccccccccH----HHHhhcCceEEeeccCchHHHHHhh
Confidence 46899999999999988653222223434423 122344454433 444443577877777755543
Q ss_pred cccCeeEEEecCHHHHHHHHHHHHHcCCCCCCCCCcc
Q 029886 80 KVNGVAFRLIPESTQVKNALREMEKAGFSDDAFAGVP 116 (186)
Q Consensus 80 ~~~~~~f~~vP~~~qv~~A~~l~~~~g~~~~~f~GVP 116 (186)
.+..+-|.|..|+. .++++.-|-....|.|.|
T Consensus 143 sKqnlPYhLLSDpk-----~e~ik~lGa~k~p~gg~~ 174 (211)
T KOG0855|consen 143 SKQNLPYHLLSDPK-----NEVIKDLGAPKDPFGGLP 174 (211)
T ss_pred hhccCCeeeecCcc-----hhHHHHhCCCCCCCCCcc
Confidence 23467788888874 455666677666777765
No 37
>TIGR00854 pts-sorbose PTS system, mannose/fructose/sorbose family, IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families.It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IIB components of this family of PTS transporters.
Probab=30.05 E-value=72 Score=25.15 Aligned_cols=39 Identities=3% Similarity=-0.016 Sum_probs=21.4
Q ss_pred eEEEEeeccchhhc-cccCeeEEEecCHHHHHHHHHHHHH
Q 029886 66 SRVVPVPLNKVFQL-KVNGVAFRLIPESTQVKNALREMEK 104 (186)
Q Consensus 66 ~kV~~v~L~~vy~l-~~~~~~f~~vP~~~qv~~A~~l~~~ 104 (186)
+++..+.+|.+..- ....+.=.+.=++++++..++|..+
T Consensus 96 ~~i~~iniG~~~~~~g~~~v~~~v~l~~~e~~~l~~l~~~ 135 (151)
T TIGR00854 96 VPIKTVNVGGMHFSNGKKQITKKVSVDDQDITAFRFLKQR 135 (151)
T ss_pred CCCCEEEECCcccCCCCEEEecceeeCHHHHHHHHHHHHc
Confidence 55556666655322 1112222345568888888888543
No 38
>PF12368 DUF3650: Protein of unknown function (DUF3650) ; InterPro: IPR022111 This domain family is found in bacteria, and is approximately 30 amino acids in length. The family is found in association with PF00581 from PFAM. There is a single completely conserved residue N that may be functionally important.
Probab=29.97 E-value=34 Score=19.81 Aligned_cols=13 Identities=46% Similarity=0.769 Sum_probs=10.9
Q ss_pred CCHHHHHHhcCCC
Q 029886 1 MSAEAIEERLAGV 13 (186)
Q Consensus 1 l~~~~I~ekL~~V 13 (186)
||++|+.++|..+
T Consensus 16 ls~ee~~~RL~~i 28 (28)
T PF12368_consen 16 LSEEEVAERLAAI 28 (28)
T ss_pred CCHHHHHHHHHcC
Confidence 7899999999753
No 39
>COG0320 LipA Lipoate synthase [Coenzyme metabolism]
Probab=29.57 E-value=2.4e+02 Score=25.11 Aligned_cols=69 Identities=26% Similarity=0.249 Sum_probs=50.7
Q ss_pred EEecCHHHHHHHHHHHHHcCCCCCCC--CCccchH---------HHHHHHHHHHhhhhcccCCCCc-cCceEEE---eHH
Q 029886 87 RLIPESTQVKNALREMEKAGFSDDAF--AGVPVFQ---------EDLEKSLRRASSDQNKLNPAFR-MGDIQVA---VFE 151 (186)
Q Consensus 87 ~~vP~~~qv~~A~~l~~~~g~~~~~f--~GVPlF~---------edl~~~l~~~~~~~~~~~P~~~-~~~I~V~---~Le 151 (186)
.|+||..-...|+.++.++|.++=.. .-||=.+ +---..|+++++.. |++- +-.|+|+ .-+
T Consensus 153 vL~PDF~G~~~al~~v~~~~pdV~nHNvETVprL~~~VRp~A~Y~~SL~~L~~~k~~~----P~i~TKSgiMlGLGEt~~ 228 (306)
T COG0320 153 VLTPDFRGNDDALEIVADAGPDVFNHNVETVPRLYPRVRPGATYERSLSLLERAKELG----PDIPTKSGLMVGLGETDE 228 (306)
T ss_pred EeCccccCCHHHHHHHHhcCcchhhcccccchhcccccCCCCcHHHHHHHHHHHHHhC----CCcccccceeeecCCcHH
Confidence 48999999999999999988754222 2377444 33344566666554 8888 8889998 788
Q ss_pred HHHHhhhc
Q 029886 152 EIIKGMKE 159 (186)
Q Consensus 152 ~vi~~m~~ 159 (186)
+|+..|++
T Consensus 229 Ev~e~m~D 236 (306)
T COG0320 229 EVIEVMDD 236 (306)
T ss_pred HHHHHHHH
Confidence 99999986
No 40
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=29.19 E-value=58 Score=25.25 Aligned_cols=45 Identities=18% Similarity=0.096 Sum_probs=30.4
Q ss_pred CCCcEEEEEcCCCCeEEEEcCCCCceEEEeeeCHHHHHHHHHHHHhc
Q 029886 11 AGVPVYALSNCNEEFVLVSGAKTGKSLGLMCFKKEDAEALLHQMKSM 57 (186)
Q Consensus 11 ~~VPVF~vtn~~g~p~l~~~~~~~~~~~lFf~~~~DA~~~L~~~k~~ 57 (186)
.++|.+++-|++|..+.-.. |...-..|+..+.|+..+++.||+.
T Consensus 78 ~~vPtivFld~~g~vi~~i~--Gy~~~~~~~y~~~~~~~~~~~m~~a 122 (130)
T cd02960 78 QYVPRIMFVDPSLTVRADIT--GRYSNRLYTYEPADIPLLIENMKKA 122 (130)
T ss_pred cccCeEEEECCCCCCccccc--ccccCccceeCcCcHHHHHHHHHHH
Confidence 36788888888877655432 2223334445799999999999875
No 41
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=29.16 E-value=1.8e+02 Score=21.03 Aligned_cols=46 Identities=9% Similarity=0.101 Sum_probs=30.6
Q ss_pred HHHHHHhc--CCCcEEEEEcCC-CCeEEEEcCCCCceEEEeeeCHHHHHHHHHHHHhc
Q 029886 3 AEAIEERL--AGVPVYALSNCN-EEFVLVSGAKTGKSLGLMCFKKEDAEALLHQMKSM 57 (186)
Q Consensus 3 ~~~I~ekL--~~VPVF~vtn~~-g~p~l~~~~~~~~~~~lFf~~~~DA~~~L~~~k~~ 57 (186)
..++..++ .++|.+.+-+.+ |..+... .|. ++.++-.++|+.+...
T Consensus 73 ~~~l~~~~~v~~~Pt~~~~~~~gg~~~~~~-------~G~--~~~~~~~~~l~~~~~~ 121 (125)
T cd02951 73 EKELARKYRVRFTPTVIFLDPEGGKEIARL-------PGY--LPPDEFLAYLEYVQEK 121 (125)
T ss_pred HHHHHHHcCCccccEEEEEcCCCCceeEEe-------cCC--CCHHHHHHHHHHHHhh
Confidence 35666665 579998888888 6655332 332 4777778888887554
No 42
>cd02130 PA_ScAPY_like PA_ScAPY_like: Protease-associated domain containing proteins like Saccharomyces cerevisiae aminopeptidase Y (ScAPY). This group contains various PA domain-containing proteins similar to the S. cerevisiae APY, including Trichophyton rubrum leucine aminopeptidase 1(LAP1). Proteins in this group belong to the peptidase M28 family. ScAPY hydrolyzes amino acid-4-methylcoumaryl-7-amides (MCAs). ScAPY more rapidly hydrolyzes dipeptidyl-MCAs. Hydrolysis of amino acid-MCAs or dipeptides is stimulated by Co2+ while the hydrolysis of dipeptidyl-MCAs, tripeptides, and longer peptides is inhibited by Co2+. ScAPY is vacuolar and is activated by proteolytic processing. LAP1 is a secreted leucine aminopeptidase. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stab
Probab=28.87 E-value=2.4e+02 Score=20.74 Aligned_cols=24 Identities=21% Similarity=0.310 Sum_probs=19.4
Q ss_pred CceEEEeeeCHHHHHHHHHHHHhc
Q 029886 34 GKSLGLMCFKKEDAEALLHQMKSM 57 (186)
Q Consensus 34 ~~~~~lFf~~~~DA~~~L~~~k~~ 57 (186)
...++..+++++|++++++.++.-
T Consensus 92 ~~~Ip~v~Is~~~G~~L~~~l~~g 115 (122)
T cd02130 92 GPYVPTVGISQEDGKALVAALANG 115 (122)
T ss_pred CCEeeEEEecHHHHHHHHHHHhcC
Confidence 345777779999999999998553
No 43
>COG3603 Uncharacterized conserved protein [Function unknown]
Probab=28.75 E-value=55 Score=25.43 Aligned_cols=20 Identities=25% Similarity=0.610 Sum_probs=16.1
Q ss_pred CCCcEEEEEcCCCCeEEEEc
Q 029886 11 AGVPVYALSNCNEEFVLVSG 30 (186)
Q Consensus 11 ~~VPVF~vtn~~g~p~l~~~ 30 (186)
++|++|++++-++..+++..
T Consensus 90 ~gigIFavStydtDhiLVr~ 109 (128)
T COG3603 90 NGIGIFAVSTYDTDHILVRE 109 (128)
T ss_pred CCccEEEEEeccCceEEEeh
Confidence 48999999998887776654
No 44
>PF07411 DUF1508: Domain of unknown function (DUF1508); InterPro: IPR010879 This domain is found in a family of proteins, which have no known function. Members of this family are often found as tandem repeats and in some cases represent the whole protein.; PDB: 3BID_H 2K49_A 2K8E_A 2K7I_A.
Probab=28.62 E-value=1.6e+02 Score=18.68 Aligned_cols=38 Identities=26% Similarity=0.235 Sum_probs=27.0
Q ss_pred cEEEEEcCCCCeEEEEcCCCCceEEEeeeCHHHHHHHHHHHHhcCcc
Q 029886 14 PVYALSNCNEEFVLVSGAKTGKSLGLMCFKKEDAEALLHQMKSMDPA 60 (186)
Q Consensus 14 PVF~vtn~~g~p~l~~~~~~~~~~~lFf~~~~DA~~~L~~~k~~~p~ 60 (186)
.-|.+...+|+.+. +.+ .| -++.+|+.-++.+|+.-|.
T Consensus 6 ~~f~L~a~ng~via-sse-------~Y-~sk~~a~~~I~~Vk~~a~~ 43 (49)
T PF07411_consen 6 FRFRLKAGNGEVIA-SSE-------GY-SSKADAEKGIESVKKNAPD 43 (49)
T ss_dssp EEEEEE-TTS-EEE-EBE-------EB-SSHHHHHHHHHHHHHHTTT
T ss_pred EEEEEEcCCCCEEE-ecC-------Cc-CCHHHHHHHHHHHHHhCCC
Confidence 45667777777666 321 45 7999999999999998765
No 45
>TIGR00510 lipA lipoate synthase. The family shows strong sequence conservation.
Probab=27.67 E-value=4.2e+02 Score=23.25 Aligned_cols=79 Identities=23% Similarity=0.133 Sum_probs=47.5
Q ss_pred EecCHHHHHHHHHHHHHcCCCCCCC--CCccchH---------HHHHHHHHHHhhhhcccCCCCc-cCceEEE---eHHH
Q 029886 88 LIPESTQVKNALREMEKAGFSDDAF--AGVPVFQ---------EDLEKSLRRASSDQNKLNPAFR-MGDIQVA---VFEE 152 (186)
Q Consensus 88 ~vP~~~qv~~A~~l~~~~g~~~~~f--~GVPlF~---------edl~~~l~~~~~~~~~~~P~~~-~~~I~V~---~Le~ 152 (186)
+.|+......++..+.++|.++=.+ .++|-++ ++.-..++++++. .|++. +..|.|+ +-++
T Consensus 148 l~~d~~g~~e~l~~l~~aG~dv~~hnlEt~~~l~~~vrr~~t~e~~Le~l~~ak~~----~pgi~~~TgiIVGlGETeee 223 (302)
T TIGR00510 148 LVPDFRGNIAALDILLDAPPDVYNHNLETVERLTPFVRPGATYRWSLKLLERAKEY----LPNLPTKSGIMVGLGETNEE 223 (302)
T ss_pred eCCcccCCHHHHHHHHHcCchhhcccccchHHHHHHhCCCCCHHHHHHHHHHHHHh----CCCCeecceEEEECCCCHHH
Confidence 3454433344667777777743122 3577776 5555667777654 37887 8889999 6677
Q ss_pred HHHhhhcCCCCCcceEEE
Q 029886 153 IIKGMKESTTSAWNDVVF 170 (186)
Q Consensus 153 vi~~m~~~~~~~~~~i~f 170 (186)
++.+|..=.+-..+.+.+
T Consensus 224 ~~etl~~Lrelg~d~v~i 241 (302)
T TIGR00510 224 IKQTLKDLRDHGVTMVTL 241 (302)
T ss_pred HHHHHHHHHhcCCCEEEe
Confidence 777776533334444443
No 46
>smart00461 WH1 WASP homology region 1. Region of the Wiskott-Aldrich syndrome protein (WASp) that contains point mutations in the majority of patients with WAS. Unknown function. Ena-like WH1 domains bind polyproline-containing peptides, and that Homer contains a WH1 domain.
Probab=27.52 E-value=81 Score=23.21 Aligned_cols=24 Identities=17% Similarity=0.169 Sum_probs=20.7
Q ss_pred CceEEEeeeCHHHHHHHHHHHHhc
Q 029886 34 GKSLGLMCFKKEDAEALLHQMKSM 57 (186)
Q Consensus 34 ~~~~~lFf~~~~DA~~~L~~~k~~ 57 (186)
..++||=|-|.+||.+|...+...
T Consensus 82 ~~~~GLnF~se~EA~~F~~~v~~~ 105 (106)
T smart00461 82 KCVYGLNFASEEEAKKFRKKVLKA 105 (106)
T ss_pred CeEEEeecCCHHHHHHHHHHHHhc
Confidence 468999889999999999998653
No 47
>PF00568 WH1: WH1 domain; InterPro: IPR000697 The EVH1 (WH1, RanBP1-WASP) domain is found in multi-domain proteins implicated in a diverse range of signalling, nuclear transport and cytoskeletal events. This domain of around 115 amino acids is present in species ranging from yeast to mammals. Many EVH1-containing proteins associate with actin-based structures and play a role in cytoskeletal organisation. EVH1 domains recognise and bind the proline-rich motif FPPPP with low-affinity, further interactions then form between flanking residues [][]. WASP family proteins contain a EVH1 (WH1) in their N-terminals which bind proline-rich sequences in the WASP interacting protein. Proteins of the RanBP1 family contain a WH1 domain in their N-terminal region, which seems to bind a different sequence motif present in the C-terminal part of RanGTP protein [,]. Tertiary structure of the WH1 domain of the Mena protein revealed structure similarities with the pleckstrin homology (PH) domain. The overall fold consists of a compact parallel beta-sandwich, closed along one edge by a long alpha-helix. A highly conserved cluster of three surface-exposed aromatic side-chains forms the recognition site for the molecules target ligands. [].; GO: 0005515 protein binding; PDB: 1I2H_A 1DDV_A 1DDW_A 1EGX_A 3SYX_A 1TJ6_B 1XOD_B 1EVH_A 1I7A_B 2JP2_A ....
Probab=27.40 E-value=2.1e+02 Score=20.95 Aligned_cols=23 Identities=17% Similarity=0.302 Sum_probs=20.1
Q ss_pred ceEEEeeeCHHHHHHHHHHHHhc
Q 029886 35 KSLGLMCFKKEDAEALLHQMKSM 57 (186)
Q Consensus 35 ~~~~lFf~~~~DA~~~L~~~k~~ 57 (186)
.++||=|-+.+||..|.+.+.+.
T Consensus 88 ~~~GLnF~se~eA~~F~~~v~~~ 110 (111)
T PF00568_consen 88 CVYGLNFASEEEADQFYKKVQEA 110 (111)
T ss_dssp CEEEEEESSHHHHHHHHHHHHHH
T ss_pred eEEEEecCCHHHHHHHHHHHhcc
Confidence 48999889999999999998653
No 48
>cd04819 PA_2 PA_2: Protease-associated (PA) domain subgroup 2. A subgroup of PA-domain containing proteins. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabidopsis ReMembR-H2 protein, iv) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), v) various plant vacuola
Probab=26.92 E-value=1.9e+02 Score=21.65 Aligned_cols=51 Identities=6% Similarity=-0.020 Sum_probs=31.6
Q ss_pred HHhcCCCcEEEEEcCCCCeEEEE---cC-CCCceEEEeeeCHHHHHHHHHHHHhc
Q 029886 7 EERLAGVPVYALSNCNEEFVLVS---GA-KTGKSLGLMCFKKEDAEALLHQMKSM 57 (186)
Q Consensus 7 ~ekL~~VPVF~vtn~~g~p~l~~---~~-~~~~~~~lFf~~~~DA~~~L~~~k~~ 57 (186)
.++...+=|.++.+..|...... .. .....+|.++++.+|++++++.++..
T Consensus 66 A~~~GA~avi~~~~~~g~~~~~~~~~~~~~~~~~IP~v~Is~edg~~L~~~l~~g 120 (127)
T cd04819 66 AVAAGAAAFVVVNTVPGVLPATGDEGTEDGPPSPIPAASVSGEDGLRLARVAERN 120 (127)
T ss_pred HHHCCCEEEEEEeCCCCcCcccccccccCCCCCCCCEEEEeHHHHHHHHHHHhcC
Confidence 33444555666665655432111 11 12346888999999999999998653
No 49
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=25.55 E-value=78 Score=27.87 Aligned_cols=38 Identities=18% Similarity=0.360 Sum_probs=29.4
Q ss_pred HHHHHHHHHHhhhhcccCCCCccCceEEEeHHHHHHhhhcCC
Q 029886 120 EDLEKSLRRASSDQNKLNPAFRMGDIQVAVFEEIIKGMKEST 161 (186)
Q Consensus 120 edl~~~l~~~~~~~~~~~P~~~~~~I~V~~Le~vi~~m~~~~ 161 (186)
-++..++.++++.. |...+..+||-+|+++.++++.+-
T Consensus 172 g~i~~Av~~aR~~~----~~~~kIEVEvesle~~~eAl~aga 209 (280)
T COG0157 172 GSITEAVRRARAAA----PFTKKIEVEVESLEEAEEALEAGA 209 (280)
T ss_pred ccHHHHHHHHHHhC----CCCceEEEEcCCHHHHHHHHHcCC
Confidence 45777888887654 665467899999999999999754
No 50
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=25.39 E-value=3.1e+02 Score=21.72 Aligned_cols=76 Identities=18% Similarity=0.318 Sum_probs=44.4
Q ss_pred CCcEEEEEc-CCCCeEEEE--cCCCCceEEEeee-------CHHHHHHHHHHHHhcCcccccCCeEEEEeeccchhhc--
Q 029886 12 GVPVYALSN-CNEEFVLVS--GAKTGKSLGLMCF-------KKEDAEALLHQMKSMDPAMRKEGSRVVPVPLNKVFQL-- 79 (186)
Q Consensus 12 ~VPVF~vtn-~~g~p~l~~--~~~~~~~~~lFf~-------~~~DA~~~L~~~k~~~p~~~~~~~kV~~v~L~~vy~l-- 79 (186)
..|-|.+.+ ..|....++ .-.| +.+=+||+ +..++..+-+.. +++.+.|++|..|+.+..+.+
T Consensus 7 ~aP~f~l~~~~~g~~~~~sl~d~~G-k~vvl~F~p~~~cp~C~~el~~l~~~~----~~~~~~gv~vi~VS~D~~~~~~~ 81 (187)
T TIGR03137 7 EIKPFKATAYHNGEFVEVTDEDVKG-KWSVFFFYPADFTFVCPTELEDLADKY----AELKKLGVEVYSVSTDTHFVHKA 81 (187)
T ss_pred cCCCcEeeeccCCceeEecHHHHCC-CEEEEEEECCCcCCcCHHHHHHHHHHH----HHHHhcCCcEEEEeCCCHHHHHH
Confidence 469999987 567643333 2233 33333333 455554443322 233333589999999987654
Q ss_pred --c----ccCeeEEEecCH
Q 029886 80 --K----VNGVAFRLIPES 92 (186)
Q Consensus 80 --~----~~~~~f~~vP~~ 92 (186)
+ ..++.|.++.|+
T Consensus 82 ~~~~~~~~~~l~fpllsD~ 100 (187)
T TIGR03137 82 WHDTSEAIGKITYPMLGDP 100 (187)
T ss_pred HHhhhhhccCcceeEEECC
Confidence 1 126788899886
No 51
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=25.16 E-value=1.5e+02 Score=20.05 Aligned_cols=39 Identities=15% Similarity=0.194 Sum_probs=19.8
Q ss_pred ceEEEeeeCH-----HHHHHHHHHHHhcCcccccCCeEEEEeeccc
Q 029886 35 KSLGLMCFKK-----EDAEALLHQMKSMDPAMRKEGSRVVPVPLNK 75 (186)
Q Consensus 35 ~~~~lFf~~~-----~DA~~~L~~~k~~~p~~~~~~~kV~~v~L~~ 75 (186)
+++-++|.+. ......|.++.++.++ ... +.|..|+++.
T Consensus 2 K~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~-~~~-v~~v~Vs~d~ 45 (95)
T PF13905_consen 2 KPVLLYFWASWCPPCKKELPKLKELYKKYKK-KDD-VEFVFVSLDE 45 (95)
T ss_dssp SEEEEEEE-TTSHHHHHHHHHHHHHHHHHTT-TTT-EEEEEEE-SS
T ss_pred CEEEEEEECCCCHHHHHHHHHHHHHHHHhCC-CCC-EEEEEEEeCC
Confidence 4455554543 2223344444444443 344 9999999874
No 52
>cd01207 Ena-Vasp Enabled-VASP-type homology (EVH1) domain. Enabled-VASP-type homology (EVH1) domain. The EVH1 domain binds to other proteins at proline rich sequences. It is found in proteins involved in cytoskeletal reorganization such as Enabled and VASP. Ena-VASP type EVH1 domains specifically recognize FPPPP motifs in the focal adhesion proteins zyxin and vinculin, and the ActA surface protein of Listeria monocytogenes. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=24.91 E-value=1.7e+02 Score=22.14 Aligned_cols=24 Identities=33% Similarity=0.268 Sum_probs=20.3
Q ss_pred CceEEEeeeCHHHHHHHHHHHHhc
Q 029886 34 GKSLGLMCFKKEDAEALLHQMKSM 57 (186)
Q Consensus 34 ~~~~~lFf~~~~DA~~~L~~~k~~ 57 (186)
..++||=|-|++||.+|...|...
T Consensus 83 ~~v~GLnF~Se~eA~~F~~~v~~A 106 (111)
T cd01207 83 RQVYGLNFGSKEDATMFASAMLSA 106 (111)
T ss_pred CeEEeeccCCHHHHHHHHHHHHHH
Confidence 478999779999999999988653
No 53
>PF14483 Cut8_M: Cut8 dimerisation domain; PDB: 3Q5W_A 3Q5X_A.
Probab=24.64 E-value=31 Score=21.14 Aligned_cols=23 Identities=22% Similarity=0.521 Sum_probs=19.5
Q ss_pred eCHHHHHHHHHHHHhcCcccccC
Q 029886 42 FKKEDAEALLHQMKSMDPAMRKE 64 (186)
Q Consensus 42 ~~~~DA~~~L~~~k~~~p~~~~~ 64 (186)
++++.-+.+|..+..++|+++.+
T Consensus 10 Ld~~qL~~lL~~l~~~HPei~~~ 32 (38)
T PF14483_consen 10 LDKDQLQSLLQSLCERHPEIQQE 32 (38)
T ss_dssp S-HHHHHHHHHHHHHHSTHHHHH
T ss_pred cCHHHHHHHHHHHHHhChhHHHH
Confidence 68899999999999999998754
No 54
>cd02122 PA_GRAIL_like PA _GRAIL_like: Protease-associated (PA) domain GRAIL-like. This group includes PA domain containing E3 (ubiquitin ligases) similar to human GRAIL (gene related to anergy in lymphocytes) protein. Proteins in this group contain a C3H2C3 RING finger. E3 ubiquitin ligase is part of an enzymic cascade, the end result of which is the ubiquitination of proteins. In this cascade, E1 activates the ubiquitin, the activated ubiquitin is carried by E2, and E3 recognizes the acceptor protein as well as catalyzes the transfer of the activated ubiquitin from E2 to this acceptor. GRAIL, a transmembrane protein localized in the endosomes, controls the development of T cell clonal anergy, and may ubiquitinate membrane-associated targets for T cell activation. GRAIL1 is associated with, and regulated by, two isoforms of otubain 1 (the ubiquitin-specific protease). Additional E3s belonging to this group include human (h)Goliath and Xenopus GREUL1 (Goliath Related E3 Ubiquitin Ligase
Probab=24.39 E-value=3.1e+02 Score=21.13 Aligned_cols=49 Identities=6% Similarity=0.016 Sum_probs=27.3
Q ss_pred HhcCCCcEEEEEcCC-CCeEEEEcCCCCceEEEeeeCHHHHHHHHHHHHh
Q 029886 8 ERLAGVPVYALSNCN-EEFVLVSGAKTGKSLGLMCFKKEDAEALLHQMKS 56 (186)
Q Consensus 8 ekL~~VPVF~vtn~~-g~p~l~~~~~~~~~~~lFf~~~~DA~~~L~~~k~ 56 (186)
++....=|.+.-|.. +..++.-..++..-++.+++++.|++++++.++.
T Consensus 81 ~~aGA~aVIIyn~~~~~~~~~~m~~~~~~~ip~v~Is~~~G~~l~~~l~~ 130 (138)
T cd02122 81 AERNASAVVIYNNPGTGNETVKMSHPGTGDIVAIMITNPKGMEILELLER 130 (138)
T ss_pred HHCCCcEEEEEECCCCCCceeeccCCCCCcceEEEEcHHHHHHHHHHHHc
Confidence 333444454444554 4434322222222344555999999999999854
No 55
>PRK11633 cell division protein DedD; Provisional
Probab=23.98 E-value=1.7e+02 Score=24.78 Aligned_cols=46 Identities=20% Similarity=0.312 Sum_probs=32.1
Q ss_pred HHHHHhcC--CCcEEEEE--cCCCCeEEEEcCCCCceEEEeeeCHHHHHHHHHHHHhc
Q 029886 4 EAIEERLA--GVPVYALS--NCNEEFVLVSGAKTGKSLGLMCFKKEDAEALLHQMKSM 57 (186)
Q Consensus 4 ~~I~ekL~--~VPVF~vt--n~~g~p~l~~~~~~~~~~~lFf~~~~DA~~~L~~~k~~ 57 (186)
+++..+|+ |...|+.. ..+|... .-.+|=| .++++|++.+.+|++.
T Consensus 164 ~~l~~kL~~~G~~Ay~~~~~~~~G~~t-------RV~VGP~-~sk~~ae~~~~~Lk~~ 213 (226)
T PRK11633 164 NEIVAKLRLSGYRVYTVPSTPVQGKIT-------RIYVGPD-ASKDKLKGSLGELKQL 213 (226)
T ss_pred HHHHHHHHHCCCeeEEEeeecCCCcEE-------EEEeCCC-CCHHHHHHHHHHHHHh
Confidence 34556664 89999975 3444321 1246777 8999999999999875
No 56
>PRK13599 putative peroxiredoxin; Provisional
Probab=23.61 E-value=2.2e+02 Score=23.57 Aligned_cols=84 Identities=13% Similarity=0.178 Sum_probs=49.9
Q ss_pred CCcEEEEEcCCCCeEEEEcCCCCceEEEeee-------CHHHHHHHHHHHHhcCcccccCCeEEEEeeccchhhc-----
Q 029886 12 GVPVYALSNCNEEFVLVSGAKTGKSLGLMCF-------KKEDAEALLHQMKSMDPAMRKEGSRVVPVPLNKVFQL----- 79 (186)
Q Consensus 12 ~VPVF~vtn~~g~p~l~~~~~~~~~~~lFf~-------~~~DA~~~L~~~k~~~p~~~~~~~kV~~v~L~~vy~l----- 79 (186)
..|-|++.+..|...+.+.-.|..++ |||+ +..+.-++-+ + .+++.+.|++|..++.+..+..
T Consensus 7 ~aPdF~l~t~~G~~~~~~~~~Gk~vV-L~~~pa~~tpvCt~El~~l~~-~---~~~f~~~gv~vigIS~D~~~~~~~w~~ 81 (215)
T PRK13599 7 KFPSMEVVTTQGVKRLPEDYAGKWFV-LFSHPADFTPVCTTEFVEFAR-K---ANDFKELNTELIGLSVDQVFSHIKWVE 81 (215)
T ss_pred CCCCCEeECCCCcEecHHHHCCCeEE-EEEeCCCCCCcCHHHHHHHHH-H---HHHHHHCCCEEEEEeCCCHHHHHHHHH
Confidence 47999999999986664433333222 2323 4444443322 2 2444433699999999988754
Q ss_pred --c---ccCeeEEEecCHH-HHHHHHH
Q 029886 80 --K---VNGVAFRLIPEST-QVKNALR 100 (186)
Q Consensus 80 --~---~~~~~f~~vP~~~-qv~~A~~ 100 (186)
+ ..++.|.++.|.. ++..+..
T Consensus 82 ~i~~~~~~~i~fPil~D~~~~va~~yg 108 (215)
T PRK13599 82 WIKDNTNIAIPFPVIADDLGKVSNQLG 108 (215)
T ss_pred hHHHhcCCCCceeEEECCCchHHHHcC
Confidence 1 2367899999863 4444333
No 57
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=23.35 E-value=1.4e+02 Score=20.96 Aligned_cols=24 Identities=17% Similarity=0.429 Sum_probs=17.7
Q ss_pred HHHHHhcC--CCcEEEEEcCCCCeEE
Q 029886 4 EAIEERLA--GVPVYALSNCNEEFVL 27 (186)
Q Consensus 4 ~~I~ekL~--~VPVF~vtn~~g~p~l 27 (186)
.++.++++ ++|.+++-|.+|..+-
T Consensus 72 ~~l~~~~~v~gtPt~~~~d~~G~~v~ 97 (112)
T PF13098_consen 72 KELAQRYGVNGTPTIVFLDKDGKIVY 97 (112)
T ss_dssp HHHHHHTT--SSSEEEECTTTSCEEE
T ss_pred HHHHHHcCCCccCEEEEEcCCCCEEE
Confidence 34555554 7999999999988663
No 58
>cd00837 EVH1 EVH1 (Enabled, Vasp-Homology) or WASP Homology (WH1) domain. EVH1 (Enabled, Vasp-Homology) or WASP Homology (WH1) domain. The EVH1 domain binds to other proteins at proline rich sequences in either FPPPP or PPXXF motifs. It is found in the cytoskeletal reorganization proteins Enabled VASP, and WASP, and in the synaptic scaffolding protein Homer. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=22.91 E-value=1.2e+02 Score=22.20 Aligned_cols=23 Identities=17% Similarity=0.195 Sum_probs=19.9
Q ss_pred CceEEEeeeCHHHHHHHHHHHHh
Q 029886 34 GKSLGLMCFKKEDAEALLHQMKS 56 (186)
Q Consensus 34 ~~~~~lFf~~~~DA~~~L~~~k~ 56 (186)
..++||=|-+.+||.+|...++.
T Consensus 80 ~~~~GL~F~se~eA~~F~~~v~~ 102 (104)
T cd00837 80 NCVYGLNFASEEEAAQFRKKVLE 102 (104)
T ss_pred CcEEEEeeCCHHHHHHHHHHHHh
Confidence 35899988999999999999865
No 59
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=22.71 E-value=1.3e+02 Score=22.94 Aligned_cols=33 Identities=15% Similarity=0.341 Sum_probs=13.8
Q ss_pred CCcEEEEEcCCCCeEEEEcCCCCceEEEeeeCHHHHHHHHHHHH
Q 029886 12 GVPVYALSNCNEEFVLVSGAKTGKSLGLMCFKKEDAEALLHQMK 55 (186)
Q Consensus 12 ~VPVF~vtn~~g~p~l~~~~~~~~~~~lFf~~~~DA~~~L~~~k 55 (186)
.||+|++.|.+|+. +|.|-=+++.++++++++|
T Consensus 97 ~IP~~I~~d~~~~~-----------lg~wgerP~~~~~~~~~~k 129 (129)
T PF14595_consen 97 SIPTFIFLDKDGKE-----------LGRWGERPKEVQELVDEYK 129 (129)
T ss_dssp -SSEEEEE-TT--E-----------EEEEESS-HHHH-------
T ss_pred ecCEEEEEcCCCCE-----------eEEEcCCCHHHhhccccCC
Confidence 58999888877654 4444335666666665543
No 60
>PF01329 Pterin_4a: Pterin 4 alpha carbinolamine dehydratase; InterPro: IPR001533 DCoH is the dimerisation cofactor of hepatocyte nuclear factor 1 (HNF-1) that functions as both a transcriptional coactivator and a pterin dehydratase []. X-ray crystallographic studies have shown that the ligand binds at four sites per tetrameric enzyme, with little apparent conformational change in the protein.; GO: 0008124 4-alpha-hydroxytetrahydrobiopterin dehydratase activity, 0006729 tetrahydrobiopterin biosynthetic process; PDB: 2V6T_B 2V6U_A 2V6S_B 2EBB_A 1USM_A 1F93_B 1DCP_C 1DCH_E 3HXA_E 1DCO_C ....
Probab=22.53 E-value=1.9e+02 Score=20.66 Aligned_cols=53 Identities=19% Similarity=0.258 Sum_probs=33.3
Q ss_pred CCHHHHHHhcCCCcEEEEEcCCCCeEEEEcCCCCceEEEeeeCHHHHHHHHHHHHh------cCcccccC
Q 029886 1 MSAEAIEERLAGVPVYALSNCNEEFVLVSGAKTGKSLGLMCFKKEDAEALLHQMKS------MDPAMRKE 64 (186)
Q Consensus 1 l~~~~I~ekL~~VPVF~vtn~~g~p~l~~~~~~~~~~~lFf~~~~DA~~~L~~~k~------~~p~~~~~ 64 (186)
|+++||.+.|+.+|=..+.+ . . .-.--+-|=+...|-+|++++-. .+|++.-+
T Consensus 5 Ls~~ei~~~L~~l~~W~~~~-~-~---------~l~r~f~f~~f~~a~~f~~~Va~~ae~~~HHP~i~~~ 63 (95)
T PF01329_consen 5 LSEEEIAEALAELPGWKLDG-G-G---------RLERTFKFKDFAEAVEFVNRVAALAEEENHHPDISLG 63 (95)
T ss_dssp -THHHHHHHHHTSTTSEEET-S-S---------EEEEEEE-SSHHHHHHHHHHHHHHHHHHT---EEEEE
T ss_pred CCHHHHHHhhhcCcCCEECC-C-C---------cEEEEEEeCCHHHHHHHHHHHHHHHHHhCCCCCeEec
Confidence 78999999999999777776 2 1 11222443468899998887654 56876443
No 61
>PTZ00256 glutathione peroxidase; Provisional
Probab=22.19 E-value=1e+02 Score=24.39 Aligned_cols=64 Identities=13% Similarity=0.166 Sum_probs=36.7
Q ss_pred HhcCCCcEEEEEcCCCCeEEEEcCCCCceEEEe-ee-----CHHHHHHHHHHHHhcCcccccCCeEEEEeeccc
Q 029886 8 ERLAGVPVYALSNCNEEFVLVSGAKTGKSLGLM-CF-----KKEDAEALLHQMKSMDPAMRKEGSRVVPVPLNK 75 (186)
Q Consensus 8 ekL~~VPVF~vtn~~g~p~l~~~~~~~~~~~lF-f~-----~~~DA~~~L~~~k~~~p~~~~~~~kV~~v~L~~ 75 (186)
-..+.+|-|++++.+|+.+-.+.-.|..++-+| |- +..+... |+++.++.. +.|+.|..|+.+.
T Consensus 15 ~~~~~~p~f~l~d~~G~~vsLs~~~Gk~vvlv~n~atwCp~C~~e~p~-l~~l~~~~~---~~gv~vv~vs~~~ 84 (183)
T PTZ00256 15 PPTKSFFEFEAIDIDGQLVQLSKFKGKKAIIVVNVACKCGLTSDHYTQ-LVELYKQYK---SQGLEILAFPCNQ 84 (183)
T ss_pred CCCCcccceEeEcCCCCEEeHHHhCCCcEEEEEEECCCCCchHHHHHH-HHHHHHHHh---hCCcEEEEEeccc
Confidence 334579999999999998877655544343333 21 2222222 333333222 2258898888653
No 62
>PF03709 OKR_DC_1_N: Orn/Lys/Arg decarboxylase, N-terminal domain; InterPro: IPR005308 This domain has a flavodoxin-like fold, and is termed the "wing" domain because of its position in the overall 3D structure. Ornithine decarboxylase from Lactobacillus 30a (L30a OrnDC, P43099 from SWISSPROT) is representative of the large, pyridoxal-5'-phosphate-dependent decarboxylases that act on lysine, arginine or ornithine. The crystal structure of the L30a OrnDC has been solved to 3.0 A resolution. Six dimers related by C6 symmetry compose the enzymatically active dodecamer (approximately 106 Da). Each monomer of L30a OrnDC can be described in terms of five sequential folding domains. The amino-terminal domain, residues 1 to 107, consists of a five-stranded beta-sheet termed the "wing" domain. Two wing domains of each dimer project inward towards the centre of the dodecamer and contribute to dodecamer stabilisation [].; GO: 0016831 carboxy-lyase activity; PDB: 3Q16_C 3N75_A 1C4K_A 1ORD_A 2VYC_D.
Probab=22.12 E-value=35 Score=25.35 Aligned_cols=49 Identities=22% Similarity=0.397 Sum_probs=28.1
Q ss_pred HHHhcCCCcEEEEEcCCCCeEEEEcCCCCceEEEeeeCHHHHHHHHHHHH
Q 029886 6 IEERLAGVPVYALSNCNEEFVLVSGAKTGKSLGLMCFKKEDAEALLHQMK 55 (186)
Q Consensus 6 I~ekL~~VPVF~vtn~~g~p~l~~~~~~~~~~~lFf~~~~DA~~~L~~~k 55 (186)
|.++=.++|||++++.... --++..-=+.+.++|++..+.+.-+-.++.
T Consensus 61 i~~~~~~iPVFl~~~~~~~-~~l~~~~l~~v~~~i~l~~~t~~fia~rI~ 109 (115)
T PF03709_consen 61 IRERNFGIPVFLLAERDTT-EDLPAEVLGEVDGFIWLFEDTAEFIARRIE 109 (115)
T ss_dssp HHHHSTT-EEEEEESCCHH-HCCCHHHHCCESEEEETTTTTHHHHHHHHH
T ss_pred HHHhCCCCCEEEEecCCCc-ccCCHHHHhhccEEEEecCCCHHHHHHHHH
Confidence 3444458999999986511 001111113578888887777766666654
No 63
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=22.07 E-value=1.9e+02 Score=21.31 Aligned_cols=75 Identities=9% Similarity=0.116 Sum_probs=42.3
Q ss_pred CCcEEEEEcCCCCeEEEEcCCCCceEEEeee------CHHHHHHHHHHHHhcCcccccCCeEEEEeeccchhhc----cc
Q 029886 12 GVPVYALSNCNEEFVLVSGAKTGKSLGLMCF------KKEDAEALLHQMKSMDPAMRKEGSRVVPVPLNKVFQL----KV 81 (186)
Q Consensus 12 ~VPVF~vtn~~g~p~l~~~~~~~~~~~lFf~------~~~DA~~~L~~~k~~~p~~~~~~~kV~~v~L~~vy~l----~~ 81 (186)
..|=|.+.+.+|..+-.+.-.++.++=.||= +..+... |+++..+ . ++ +.|..|+.+....+ +.
T Consensus 5 ~aP~f~l~~~~g~~~~l~~~~gk~vvl~f~~~~~c~~C~~e~~~-l~~~~~~---~-~~-~~vi~Is~d~~~~~~~~~~~ 78 (143)
T cd03014 5 KAPDFTLVTSDLSEVSLADFAGKVKVISVFPSIDTPVCATQTKR-FNKEAAK---L-DN-TVVLTISADLPFAQKRWCGA 78 (143)
T ss_pred CCCCcEEECCCCcEEeHHHhCCCeEEEEEEcCCCCCcCHHHHHH-HHHHHHh---c-CC-CEEEEEECCCHHHHHHHHHh
Confidence 4788999999998776654444434333321 2333333 3333333 2 23 88999998876544 22
Q ss_pred cCe-eEEEecCH
Q 029886 82 NGV-AFRLIPES 92 (186)
Q Consensus 82 ~~~-~f~~vP~~ 92 (186)
-++ .|.++-+.
T Consensus 79 ~~~~~~~~l~D~ 90 (143)
T cd03014 79 EGVDNVTTLSDF 90 (143)
T ss_pred cCCCCceEeecC
Confidence 232 56666664
No 64
>PRK11425 PTS system N-acetylgalactosamine-specific transporter subunit IIB; Provisional
Probab=21.91 E-value=1.2e+02 Score=24.09 Aligned_cols=66 Identities=11% Similarity=0.132 Sum_probs=34.5
Q ss_pred EEEeeeCHHHHHHHHHHHHhc---------Ccc----cccCCeEEEEeeccchhhcc-ccCeeEEEecCHHHHHHHHHHH
Q 029886 37 LGLMCFKKEDAEALLHQMKSM---------DPA----MRKEGSRVVPVPLNKVFQLK-VNGVAFRLIPESTQVKNALREM 102 (186)
Q Consensus 37 ~~lFf~~~~DA~~~L~~~k~~---------~p~----~~~~~~kV~~v~L~~vy~l~-~~~~~f~~vP~~~qv~~A~~l~ 102 (186)
+-+.+++.++|-++++. +.. +|+ +...|+.+..+.+|.+..-. ...+.=.+.=++++++..++|.
T Consensus 56 vk~~i~sv~~a~~~l~~-~~~~~~v~il~k~~~d~~~l~~~g~~i~~iNvG~~~~~~g~~~i~~~v~l~~~e~~~lk~l~ 134 (157)
T PRK11425 56 IAVRFWTLQKVIDNIHR-AADRQKILLVCKTPADFLTLVKGGVPVNRINVGNMHYANGKQQIAKTVSVDAGDIAAFNDLK 134 (157)
T ss_pred CeEEEEEHHHHHHHHhc-cCCCceEEEEECCHHHHHHHHHcCCCCCEEEECCcccCCCCEEEecceeeCHHHHHHHHHHH
Confidence 44444677777777765 221 111 12223556666666663221 1112222445788888888885
Q ss_pred H
Q 029886 103 E 103 (186)
Q Consensus 103 ~ 103 (186)
.
T Consensus 135 ~ 135 (157)
T PRK11425 135 A 135 (157)
T ss_pred H
Confidence 4
No 65
>PF10787 YfmQ: Uncharacterised protein from bacillus cereus group; InterPro: IPR019723 This entry represents proteins conserved in the Bacillus cereus group. Several members are called YfmQ but the function is not known.
Probab=21.60 E-value=1.3e+02 Score=23.95 Aligned_cols=37 Identities=14% Similarity=0.229 Sum_probs=30.6
Q ss_pred CCCCeEEEEcCCCCceEEEeeeCHHHHHHHHHHHHhc
Q 029886 21 CNEEFVLVSGAKTGKSLGLMCFKKEDAEALLHQMKSM 57 (186)
Q Consensus 21 ~~g~p~l~~~~~~~~~~~lFf~~~~DA~~~L~~~k~~ 57 (186)
..|.|+++....|.+-+.||..|.+|--..+.|.|++
T Consensus 90 ~~gtPlvI~tKkGK~dv~f~vYsYdDHVDVVKQyKKK 126 (149)
T PF10787_consen 90 NSGTPLVIDTKKGKKDVTFFVYSYDDHVDVVKQYKKK 126 (149)
T ss_pred cCCCCEEEEeccCcceeEEEEEecccHHHHHHHhhhc
Confidence 3488999998888888888888999988888887665
No 66
>COG3643 Glutamate formiminotransferase [Amino acid transport and metabolism]
Probab=21.10 E-value=4.6e+02 Score=23.04 Aligned_cols=91 Identities=21% Similarity=0.365 Sum_probs=51.9
Q ss_pred CCceEEEeeeCHHHHHHHHHHHHh-------------cCcccccCCeEEEEeeccchhhccccCeeEEEec-----CHHH
Q 029886 33 TGKSLGLMCFKKEDAEALLHQMKS-------------MDPAMRKEGSRVVPVPLNKVFQLKVNGVAFRLIP-----ESTQ 94 (186)
Q Consensus 33 ~~~~~~lFf~~~~DA~~~L~~~k~-------------~~p~~~~~~~kV~~v~L~~vy~l~~~~~~f~~vP-----~~~q 94 (186)
+..|+.+.| +++.+....-++-+ ++|.++.. .| +| |+| .++-
T Consensus 45 NRsViT~vg-dp~~~~~A~f~~ik~AaelIDM~~H~GeHpRmGA~--DV--iP---------------fvPl~d~tteec 104 (302)
T COG3643 45 NRSVITLVG-DPSKVVNAAFALIKKAAELIDMRNHKGEHPRMGAA--DV--IP---------------FVPLKDTTTEEC 104 (302)
T ss_pred CceEEEEec-ChHHHHHHHHHHHHHHHHhhchhccCCCCCCCCcc--ce--ec---------------eeecccccHHHH
Confidence 567888885 77776665444322 46777544 33 22 444 2556
Q ss_pred HHHHHHHHHHcCCCCCCCCCccchH-HHHHHHHHHHhhhhcccCCCCc-cCceEEEeHHHHHHhhhc
Q 029886 95 VKNALREMEKAGFSDDAFAGVPVFQ-EDLEKSLRRASSDQNKLNPAFR-MGDIQVAVFEEIIKGMKE 159 (186)
Q Consensus 95 v~~A~~l~~~~g~~~~~f~GVPlF~-edl~~~l~~~~~~~~~~~P~~~-~~~I~V~~Le~vi~~m~~ 159 (186)
|+.|+.+=+.-|.. =|+|||+ ||.... |+-. -++|.=.-.|.+-+.|.+
T Consensus 105 veiske~gkrvgee----lgiPVylYe~aatr------------p~R~~La~IRkgqyE~l~ekike 155 (302)
T COG3643 105 VEISKELGKRVGEE----LGIPVYLYEDAATR------------PERQNLADIRKGQYEGLKEKIKE 155 (302)
T ss_pred HHHHHHHHHHhhHh----hCCcEEEehhhccC------------cccccHHHHhhhhhhhHHHHhcC
Confidence 77777775555543 2999999 654321 2211 344555556666666654
No 67
>COG0027 PurT Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) [Nucleotide transport and metabolism]
Probab=20.70 E-value=2.9e+02 Score=25.28 Aligned_cols=75 Identities=16% Similarity=0.303 Sum_probs=41.2
Q ss_pred CCcEEEEEcCCCCeEEEEcCCCCceEEEeeeCHHHHHHHHHHHHhcCcccccCCeEEEEeeccchhhccccCeeEEEecC
Q 029886 12 GVPVYALSNCNEEFVLVSGAKTGKSLGLMCFKKEDAEALLHQMKSMDPAMRKEGSRVVPVPLNKVFQLKVNGVAFRLIPE 91 (186)
Q Consensus 12 ~VPVF~vtn~~g~p~l~~~~~~~~~~~lFf~~~~DA~~~L~~~k~~~p~~~~~~~kV~~v~L~~vy~l~~~~~~f~~vP~ 91 (186)
|+=|.+|--..+.|-+-..-. .-++.+ -|++++-+-+++.+|+.-= ..|.++..+...++..+|.. +||+
T Consensus 35 G~eViAVDrY~~APAmqVAhr-s~Vi~M-----lD~~al~avv~rekPd~IV--pEiEAI~td~L~elE~~G~~--VVP~ 104 (394)
T COG0027 35 GVEVIAVDRYANAPAMQVAHR-SYVIDM-----LDGDALRAVVEREKPDYIV--PEIEAIATDALVELEEEGYT--VVPN 104 (394)
T ss_pred CCEEEEecCcCCChhhhhhhh-eeeeec-----cCHHHHHHHHHhhCCCeee--ehhhhhhHHHHHHHHhCCce--Eccc
Confidence 355555555555544422111 123333 3555555556666787421 35677777777777666544 7777
Q ss_pred HHHHH
Q 029886 92 STQVK 96 (186)
Q Consensus 92 ~~qv~ 96 (186)
-+..+
T Consensus 105 ArAt~ 109 (394)
T COG0027 105 ARATK 109 (394)
T ss_pred hHHHH
Confidence 76654
No 68
>PF12323 HTH_OrfB_IS605: Helix-turn-helix domain; InterPro: IPR021027 This entry represents an N-terminal helix-turn-helix domain found in a variety of putative transposases [, , ]. It is usually associated with PF01385 from PFAM and PF07282 from PFAM.
Probab=20.68 E-value=1.7e+02 Score=17.91 Aligned_cols=20 Identities=25% Similarity=0.342 Sum_probs=15.6
Q ss_pred CeeEEEecCHHHHHHHHHHH
Q 029886 83 GVAFRLIPESTQVKNALREM 102 (186)
Q Consensus 83 ~~~f~~vP~~~qv~~A~~l~ 102 (186)
+..|+|.|+.+|.+......
T Consensus 4 ~~k~rl~Pt~~Q~~~L~~~~ 23 (46)
T PF12323_consen 4 AYKYRLYPTKEQEEKLERWF 23 (46)
T ss_pred ceEEEEecCHHHHHHHHHHH
Confidence 46899999999988765543
No 69
>PF10792 DUF2605: Protein of unknown function (DUF2605); InterPro: IPR019728 This entry represents a protein conserved in Cyanobacteria. The function is not known.
Probab=20.58 E-value=2.2e+02 Score=21.24 Aligned_cols=34 Identities=18% Similarity=0.218 Sum_probs=27.0
Q ss_pred eeCHHHHHHHHHHHHhcCcccccCCeEEEEeeccchhhccccCeeEEEecCHHHHHHHHHHHHHcCCC
Q 029886 41 CFKKEDAEALLHQMKSMDPAMRKEGSRVVPVPLNKVFQLKVNGVAFRLIPESTQVKNALREMEKAGFS 108 (186)
Q Consensus 41 f~~~~DA~~~L~~~k~~~p~~~~~~~kV~~v~L~~vy~l~~~~~~f~~vP~~~qv~~A~~l~~~~g~~ 108 (186)
||+.++=.++|++++.. +++|..|+.|.+..+..
T Consensus 37 fls~~eQ~~Ll~Rv~qa----------------------------------q~ev~aa~~Lf~At~~q 70 (98)
T PF10792_consen 37 FLSPEEQSDLLERVKQA----------------------------------QQEVNAARALFQATDGQ 70 (98)
T ss_pred cCCHHHHHHHHHHHHHH----------------------------------HHHHHHHHHHHHhcCcc
Confidence 47999999999999765 56688888888777654
No 70
>PF14815 NUDIX_4: NUDIX domain; PDB: 1VRL_A 1RRQ_A 3G0Q_A 3FSQ_A 1RRS_A 3FSP_A.
Probab=20.50 E-value=77 Score=22.81 Aligned_cols=25 Identities=20% Similarity=0.274 Sum_probs=17.4
Q ss_pred EEEEEcCCCCeEEEEcCCCCceEEE
Q 029886 15 VYALSNCNEEFVLVSGAKTGKSLGL 39 (186)
Q Consensus 15 VF~vtn~~g~p~l~~~~~~~~~~~l 39 (186)
||++.+.+|..++...++++---||
T Consensus 1 ~~~i~~~~~~~Ll~kRp~~gll~GL 25 (114)
T PF14815_consen 1 VLLIIRSQGRVLLEKRPEKGLLAGL 25 (114)
T ss_dssp EEEEEETTSEEEEEE--SSSTTTT-
T ss_pred CEEEEEeCCEEEEEECCCCChhhcC
Confidence 6899999999999988876643333
No 71
>COG1036 Archaeal flavoproteins [Energy production and conversion]
Probab=20.36 E-value=2.2e+02 Score=23.44 Aligned_cols=44 Identities=32% Similarity=0.408 Sum_probs=30.9
Q ss_pred HHHHhcC-CCcEEEEE-cCCCCeEEEEcCCCCceEEEeeeCHHHHHHH
Q 029886 5 AIEERLA-GVPVYALS-NCNEEFVLVSGAKTGKSLGLMCFKKEDAEAL 50 (186)
Q Consensus 5 ~I~ekL~-~VPVF~vt-n~~g~p~l~~~~~~~~~~~lFf~~~~DA~~~ 50 (186)
.|++..+ .||||++- |.++.-+....+ +++-+-+. ++..|++.-
T Consensus 117 AVaqa~Kg~VPvyivP~D~k~G~V~t~~~-gGk~~el~-vR~vDvenv 162 (187)
T COG1036 117 AVAQAGKGKVPVYIVPVDYKEGTVETTLP-GGKKLELR-VRKVDVENV 162 (187)
T ss_pred HHHHhcCCCCcEEEecccccCCeEEEcCC-CCcEEEEE-EeecchHHH
Confidence 3444444 49999998 555555555555 47788898 899999873
Done!