Query 029886
Match_columns 186
No_of_seqs 123 out of 135
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 07:55:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029886.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029886hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ev1_A Anabena TIC22; TIC22 fo 100.0 1.5E-49 5.1E-54 336.8 17.0 174 1-182 2-221 (252)
2 4e6z_A Apicoplast TIC22, putat 100.0 8.3E-41 2.8E-45 287.1 11.5 162 2-179 66-266 (279)
3 4ev1_A Anabena TIC22; TIC22 fo 99.3 3.2E-12 1.1E-16 108.1 6.1 93 9-107 129-228 (252)
4 4e6z_A Apicoplast TIC22, putat 98.9 4.6E-09 1.6E-13 90.0 9.0 87 10-108 189-275 (279)
5 2z0r_A Putative uncharacterize 83.3 2.4 8.3E-05 30.7 5.4 51 13-72 7-57 (103)
6 4eo3_A Bacterioferritin comigr 75.2 3.1 0.00011 35.2 4.6 74 10-92 1-85 (322)
7 2lrn_A Thiol:disulfide interch 74.4 5.2 0.00018 28.7 5.1 76 13-93 9-95 (152)
8 3or5_A Thiol:disulfide interch 74.3 5.5 0.00019 28.5 5.2 81 12-96 13-103 (165)
9 2yzh_A Probable thiol peroxida 72.3 13 0.00046 27.2 7.1 77 12-91 26-110 (171)
10 1xvw_A Hypothetical protein RV 65.5 10 0.00034 27.2 5.0 79 12-91 14-100 (160)
11 3drn_A Peroxiredoxin, bacterio 63.4 10 0.00034 27.6 4.7 79 12-92 7-94 (161)
12 3gkn_A Bacterioferritin comigr 61.7 2.2 7.4E-05 31.1 0.6 80 12-92 12-100 (163)
13 1psq_A Probable thiol peroxida 61.6 12 0.00041 27.3 4.8 78 12-91 21-105 (163)
14 3p7x_A Probable thiol peroxida 58.8 15 0.00052 26.8 5.0 78 12-92 25-109 (166)
15 2wfc_A Peroxiredoxin 5, PRDX5; 58.6 8.3 0.00028 28.9 3.5 77 12-92 8-100 (167)
16 4g2e_A Peroxiredoxin; redox pr 58.1 2.6 9E-05 31.1 0.6 77 12-92 9-95 (157)
17 4hde_A SCO1/SENC family lipopr 57.4 11 0.00037 28.2 4.0 61 12-74 11-77 (170)
18 1q98_A Thiol peroxidase, TPX; 57.4 31 0.001 25.1 6.5 75 12-92 22-107 (165)
19 3zrd_A Thiol peroxidase; oxido 56.5 29 0.00099 26.6 6.5 75 12-92 57-142 (200)
20 3ixr_A Bacterioferritin comigr 55.2 2.1 7.2E-05 32.3 -0.4 80 13-92 31-116 (179)
21 3mng_A Peroxiredoxin-5, mitoch 52.9 7.8 0.00027 29.5 2.5 77 12-92 20-112 (173)
22 3erw_A Sporulation thiol-disul 49.5 58 0.002 22.1 7.2 59 12-75 14-77 (145)
23 2y9j_Y Lipoprotein PRGK, prote 49.1 70 0.0024 24.6 7.5 63 42-119 7-70 (170)
24 3fk8_A Disulphide isomerase; A 48.4 24 0.00081 24.4 4.4 49 5-55 79-132 (133)
25 3raz_A Thioredoxin-related pro 45.8 57 0.002 22.8 6.2 47 5-60 94-144 (151)
26 2jsy_A Probable thiol peroxida 43.9 20 0.00069 25.9 3.5 78 12-91 23-107 (167)
27 3bid_A UPF0339 protein NMB1088 42.3 55 0.0019 21.3 5.0 39 13-60 12-50 (64)
28 3uma_A Hypothetical peroxiredo 41.8 8 0.00027 29.8 1.0 77 12-92 31-125 (184)
29 3kij_A Probable glutathione pe 39.1 34 0.0012 25.2 4.2 59 12-75 17-81 (180)
30 3g74_A Protein of unknown func 38.1 15 0.0005 26.2 1.8 49 2-72 34-82 (100)
31 1xvq_A Thiol peroxidase; thior 37.2 55 0.0019 23.9 5.1 75 12-93 23-108 (175)
32 1yj7_A ESCJ; mixed alpha/beta, 36.2 79 0.0027 24.3 5.9 61 41-116 8-68 (171)
33 3hdc_A Thioredoxin family prot 35.2 86 0.003 22.1 5.8 77 12-92 20-103 (158)
34 3ph9_A Anterior gradient prote 32.2 11 0.00037 28.3 0.3 45 11-58 99-144 (151)
35 3gl3_A Putative thiol:disulfid 32.1 49 0.0017 23.0 3.9 75 12-92 8-93 (152)
36 3kcm_A Thioredoxin family prot 32.1 94 0.0032 21.5 5.5 60 12-75 7-71 (154)
37 2k49_A UPF0339 protein SO_3888 31.8 1.5E+02 0.005 21.6 6.9 64 6-74 46-112 (118)
38 2p5q_A Glutathione peroxidase 31.2 48 0.0016 23.5 3.8 58 12-74 11-74 (170)
39 2v1m_A Glutathione peroxidase; 31.1 47 0.0016 23.5 3.7 59 12-75 10-74 (169)
40 3keb_A Probable thiol peroxida 30.8 41 0.0014 27.0 3.6 81 12-101 27-125 (224)
41 4gqc_A Thiol peroxidase, perox 30.7 5.1 0.00017 29.9 -1.8 77 12-93 10-99 (164)
42 1tp9_A Peroxiredoxin, PRX D (t 30.5 40 0.0014 24.5 3.3 77 12-92 9-104 (162)
43 2ggt_A SCO1 protein homolog, m 30.3 31 0.001 24.5 2.5 77 13-91 3-95 (164)
44 3ztl_A Thioredoxin peroxidase; 30.2 26 0.00088 27.2 2.2 81 12-93 45-142 (222)
45 3eur_A Uncharacterized protein 30.1 65 0.0022 22.2 4.3 64 12-76 10-78 (142)
46 2v2g_A Peroxiredoxin 6; oxidor 29.6 27 0.00092 27.9 2.3 79 12-92 8-102 (233)
47 2a4v_A Peroxiredoxin DOT5; yea 29.3 20 0.00067 25.8 1.3 79 12-92 12-99 (159)
48 2obi_A PHGPX, GPX-4, phospholi 28.9 53 0.0018 24.1 3.7 58 12-74 26-89 (183)
49 3me7_A Putative uncharacterize 28.7 57 0.002 23.8 3.9 61 12-74 6-73 (170)
50 1jfu_A Thiol:disulfide interch 28.7 1E+02 0.0034 22.3 5.3 63 12-75 39-103 (186)
51 2qkl_A DCP1 protein, SPBC3B9.2 28.3 71 0.0024 23.5 4.3 24 33-56 100-123 (127)
52 2gs3_A PHGPX, GPX-4, phospholi 28.2 56 0.0019 24.1 3.8 59 12-75 28-92 (185)
53 2lrt_A Uncharacterized protein 28.0 41 0.0014 24.0 2.9 64 12-76 14-79 (152)
54 2p31_A CL683, glutathione pero 27.9 57 0.002 24.0 3.8 58 12-74 28-91 (181)
55 1lu4_A Soluble secreted antige 27.5 1.2E+02 0.0041 20.2 5.2 58 12-75 3-65 (136)
56 3ewl_A Uncharacterized conserv 26.9 91 0.0031 21.2 4.6 80 12-92 6-95 (142)
57 3syx_A Sprouty-related, EVH1 d 26.8 62 0.0021 24.1 3.7 28 34-61 95-122 (130)
58 2lja_A Putative thiol-disulfid 26.5 62 0.0021 22.4 3.6 47 5-60 99-147 (152)
59 2f9s_A Thiol-disulfide oxidore 25.9 1.1E+02 0.0037 21.2 4.8 59 12-74 5-68 (151)
60 3fw2_A Thiol-disulfide oxidore 25.7 26 0.00089 24.7 1.4 77 12-92 10-101 (150)
61 2c0d_A Thioredoxin peroxidase 25.5 68 0.0023 25.0 4.0 77 12-92 30-128 (221)
62 2b7k_A SCO1 protein; metalloch 25.5 86 0.003 23.5 4.5 77 13-91 21-112 (200)
63 1n8j_A AHPC, alkyl hydroperoxi 25.2 30 0.001 25.9 1.7 77 12-92 6-99 (186)
64 3u5r_E Uncharacterized protein 25.0 51 0.0017 25.3 3.1 62 12-74 37-101 (218)
65 2i81_A 2-Cys peroxiredoxin; st 24.5 53 0.0018 25.3 3.1 76 12-92 26-124 (213)
66 1xzo_A BSSCO, hypothetical pro 24.5 58 0.002 23.2 3.2 61 12-74 12-78 (174)
67 1kng_A Thiol:disulfide interch 24.2 1.8E+02 0.006 19.9 6.1 59 12-74 13-81 (156)
68 2lyd_A Decapping protein 1; DC 23.0 97 0.0033 23.0 4.2 22 34-55 107-128 (134)
69 2l5o_A Putative thioredoxin; s 22.7 71 0.0024 22.1 3.3 59 12-74 7-70 (153)
70 2rli_A SCO2 protein homolog, m 22.1 59 0.002 23.1 2.8 59 14-75 7-74 (171)
71 1zzo_A RV1677; thioredoxin fol 21.4 1.8E+02 0.0062 19.1 5.5 57 12-74 4-65 (136)
72 2l57_A Uncharacterized protein 20.5 2E+02 0.0068 19.2 5.5 46 5-59 73-120 (126)
73 1prx_A HORF6; peroxiredoxin, h 20.1 49 0.0017 25.9 2.1 76 12-92 10-106 (224)
No 1
>4ev1_A Anabena TIC22; TIC22 fold, chaperon, protein transport, TIC22-like family, thylakoids, chaperone; HET: NHE; 1.95A {Anabaena SP}
Probab=100.00 E-value=1.5e-49 Score=336.77 Aligned_cols=174 Identities=24% Similarity=0.434 Sum_probs=161.7
Q ss_pred CCHHHHHHhcCCCcEEEEEcCCCCeEEEEcCCC------CceEEEeeeCHHHHHHHHHHHHh---cCc---ccccCCeEE
Q 029886 1 MSAEAIEERLAGVPVYALSNCNEEFVLVSGAKT------GKSLGLMCFKKEDAEALLHQMKS---MDP---AMRKEGSRV 68 (186)
Q Consensus 1 l~~~~I~ekL~~VPVF~vtn~~g~p~l~~~~~~------~~~~~lFf~~~~DA~~~L~~~k~---~~p---~~~~~~~kV 68 (186)
||+++|+++|++||||+|||++|+||+++.+++ +..+++||||++||++||+++|+ +|| +++++ +||
T Consensus 2 L~e~eV~ekL~~VPVF~Itn~~G~Pll~~~~~~~~~~~~~~~V~~~F~s~~dA~~~L~~lk~~~~~np~~~~~~~~-~kV 80 (252)
T 4ev1_A 2 LSEQQIKEKLDSVPIYLVTNEKGLPLSRPLPNAPNGQKAGGSITGAYMSRQEAQAFINELRNAKNKDPKMQEIVKS-LQV 80 (252)
T ss_dssp CCHHHHHHHHTTSEEEEEECTTCCBCEEECCCCTTSCCSCSEEEEEESCHHHHHHHHHHHHHCSSCCHHHHHHHTT-CEE
T ss_pred CCHHHHHHHhcCCcEEEEECCCCCeEEEecCCccccccCCCeEEEEEecHHHHHHHHHHHHhccccCchhhhhccC-ceE
Confidence 899999999999999999999999999998772 34556666999999999999999 999 99999 999
Q ss_pred EEeeccchhhc------cccCeeEEEecCHHHHHHHHHHHHHcCCCCCCCCCccchH-----------------------
Q 029886 69 VPVPLNKVFQL------KVNGVAFRLIPESTQVKNALREMEKAGFSDDAFAGVPVFQ----------------------- 119 (186)
Q Consensus 69 ~~v~L~~vy~l------~~~~~~f~~vP~~~qv~~A~~l~~~~g~~~~~f~GVPlF~----------------------- 119 (186)
.+|+|++||++ +.+++.|+|+|+++||++|+.|++++|+.+++|+|||||+
T Consensus 81 ~~vsL~~vyql~~~~~~k~~~l~F~fvP~~~qV~~A~~Ll~~~Gq~~~~f~gVPvF~~~~~~~~~~Lti~~~~~~~~~iP 160 (252)
T 4ev1_A 81 TAVPLGVIYQQLQQTKKDPNRLLFAFKPVDQEIKGAMDLLRQSGQQVNQFKSVPMFAVRFAPDQGYVPIKVGTGNEQVVP 160 (252)
T ss_dssp EEEEHHHHHHHHHHTTTCTTCEEEEEECCHHHHHHHHHHHHTTTCCCSCCCSCEEEEEESSTTSCBCCEEETTTTEEEEE
T ss_pred EEeeHHHHHHHHHhhccCCcCceEEEcCCHHHHHHHHHHHHHcCCCcccCCCccEEEEecCCCCccEEEEeCCCCCEEEe
Confidence 99999999999 5679999999999999999999999999999999999999
Q ss_pred -----HHHHHHHHHHhhhhcccCCCCccCceEEEeHHHHHHhhhcCCCCCcceEEEecCcccccCCCc
Q 029886 120 -----EDLEKSLRRASSDQNKLNPAFRMGDIQVAVFEEIIKGMKESTTSAWNDVVFIPPGFDVSTNPN 182 (186)
Q Consensus 120 -----edl~~~l~~~~~~~~~~~P~~~~~~I~V~~Le~vi~~m~~~~~~~~~~i~fiPp~~s~~~~~~ 182 (186)
+||+++|+++++++ |+ ++|+|++|++||++|++++|++|++++||||++|++.--+
T Consensus 161 lFF~KedL~~~l~~~kkq~----P~---~~I~V~~Le~vI~~m~~~~d~~~~~ivfiPs~es~e~i~~ 221 (252)
T 4ev1_A 161 LFLSKQDAQGLLGQVKPKH----PK---ADIQVLDIDGVLQTLQDKNDTWLNQVVLVPSPESREYIRT 221 (252)
T ss_dssp EESSHHHHHHHHHHHTTTC----TT---CEEEEEEHHHHHHHHHHCCCGGGGGEEEECCHHHHHHHHT
T ss_pred eEecHHHHHHHHHHHHHhC----CC---CcEEEeeHHHHHHHHhcCcccccceEEEECCHHHHHHHHh
Confidence 99999999999886 76 8999999999999999999999999999999999876433
No 2
>4e6z_A Apicoplast TIC22, putative; TIC complex, import protein, transport protein; 2.15A {Plasmodium falciparum 3D7}
Probab=100.00 E-value=8.3e-41 Score=287.13 Aligned_cols=162 Identities=22% Similarity=0.297 Sum_probs=140.0
Q ss_pred CHHHHHHhcCCCcEEEEEcCCCCeEEEEcCCCCceEEEeeeCHHHHHHHHHHHHh-cCcccccCCeEEEEeeccchhhc-
Q 029886 2 SAEAIEERLAGVPVYALSNCNEEFVLVSGAKTGKSLGLMCFKKEDAEALLHQMKS-MDPAMRKEGSRVVPVPLNKVFQL- 79 (186)
Q Consensus 2 ~~~~I~ekL~~VPVF~vtn~~g~p~l~~~~~~~~~~~lFf~~~~DA~~~L~~~k~-~~p~~~~~~~kV~~v~L~~vy~l- 79 (186)
++++|+|||++||||+|||++|+||++++++ . .+++||||++||+++|+++++ ++|+++++ +||++++|++||++
T Consensus 66 ~e~~I~EKL~~VPVF~Itn~~G~Pll~~~~~-~-~V~~fF~s~~DA~a~L~el~k~~~~~~~~~-~kV~pvsL~kvy~l~ 142 (279)
T 4e6z_A 66 DERPIEEKLEVIPVFLITNYNSSPYIFQENE-K-QVCYMFLCPYDAENMLNDMIKYNGMKYNGN-IKIHNITMKKAYELM 142 (279)
T ss_dssp --CCHHHHSTTSEEEEEECTTCCBCCEEETT-E-EEEEEESSHHHHHHHHHHHHHHCHHHHTTS-CEEEEEEHHHHHHHH
T ss_pred cHHhHHHHhcCCCEEEEEcCCCCEEEecCCC-C-eEEEEECCHHHHHHHHHHHHhccCcccccC-ceEEEecHHHHHHHH
Confidence 6899999999999999999999999998654 3 456677999999999999755 55788888 99999999999987
Q ss_pred -----------------cccCeeEEEecCHHHHHHHHHHHHHcCCCCCCCCCccchH--------------------HHH
Q 029886 80 -----------------KVNGVAFRLIPESTQVKNALREMEKAGFSDDAFAGVPVFQ--------------------EDL 122 (186)
Q Consensus 80 -----------------~~~~~~f~~vP~~~qv~~A~~l~~~~g~~~~~f~GVPlF~--------------------edl 122 (186)
+.+++.|+|+|+++||++|+.++++.|+ .|+|||||+ |||
T Consensus 143 ~~~~~~~~~~i~~~~~~k~~~l~fr~vP~~~qV~~A~~ll~~~gq---~~~gVPVF~~~~Lti~k~~k~iiPlFF~keDL 219 (279)
T 4e6z_A 143 KEFLQLEKMEVNKEDSKKKQNIYWKLISSKRQLQNALYYLSFTKK---SELMYPVFYAENLYIQKDGSNIIPLFFDLEDL 219 (279)
T ss_dssp HHHHHHHHC----------CCEEEEEECCHHHHHHHHTTSCTTTS---TTCCSEEEEETTCCEECSSSEEEEEESSHHHH
T ss_pred hhcccccchhcccccccCCcceeeEecCCHHHHHHHHHHHHhcCC---cCCCccEEEEeeEEEeeCCeEEEeeEecHHHH
Confidence 3468999999999999999999988876 378999999 999
Q ss_pred HHHHHHHhhhhcccCCCCccCceEEEeHHHHHHhhhcCCCCCcceEEEecCcccccC
Q 029886 123 EKSLRRASSDQNKLNPAFRMGDIQVAVFEEIIKGMKESTTSAWNDVVFIPPGFDVST 179 (186)
Q Consensus 123 ~~~l~~~~~~~~~~~P~~~~~~I~V~~Le~vi~~m~~~~~~~~~~i~fiPp~~s~~~ 179 (186)
+++|++++++. |+..+++|+|++|+++|..| +|++++||||++|++.
T Consensus 220 ~~~l~q~~~~~----p~~~~~~I~V~~L~~ll~~~------d~~kivFIPs~eSlef 266 (279)
T 4e6z_A 220 KEAIEEQKNKA----LSKVDYKIKVLNMVDLIFTE------DHKKFGFVPSTQSVKY 266 (279)
T ss_dssp HHHHHHHHTTC----SSCCCCCEEEEEHHHHHTCS------CCTTEEEECCHHHHHH
T ss_pred HHHHHHhhhcC----CCCCCCceEEEhHHHHHhhC------CcCeEEEECCHHHHHH
Confidence 99999998765 66448999999999999876 4678999999999875
No 3
>4ev1_A Anabena TIC22; TIC22 fold, chaperon, protein transport, TIC22-like family, thylakoids, chaperone; HET: NHE; 1.95A {Anabaena SP}
Probab=99.28 E-value=3.2e-12 Score=108.11 Aligned_cols=93 Identities=18% Similarity=0.249 Sum_probs=75.5
Q ss_pred hcCCCcEEEEEcCCCCeEEEEcCC--CCceEEEeeeCHHHHHHHHHHHHhcCcccccCCeEEEEeeccchhhc--ccc--
Q 029886 9 RLAGVPVYALSNCNEEFVLVSGAK--TGKSLGLMCFKKEDAEALLHQMKSMDPAMRKEGSRVVPVPLNKVFQL--KVN-- 82 (186)
Q Consensus 9 kL~~VPVF~vtn~~g~p~l~~~~~--~~~~~~lFf~~~~DA~~~L~~~k~~~p~~~~~~~kV~~v~L~~vy~l--~~~-- 82 (186)
.+.|||||.+..+.+..+|+...+ +..++||| |+++|++++|+++++++|+ .+|.+++|+.+++. +++
T Consensus 129 ~f~gVPvF~~~~~~~~~~Lti~~~~~~~~~iPlF-F~KedL~~~l~~~kkq~P~-----~~I~V~~Le~vI~~m~~~~d~ 202 (252)
T 4ev1_A 129 QFKSVPMFAVRFAPDQGYVPIKVGTGNEQVVPLF-LSKQDAQGLLGQVKPKHPK-----ADIQVLDIDGVLQTLQDKNDT 202 (252)
T ss_dssp CCCSCEEEEEESSTTSCBCCEEETTTTEEEEEEE-SSHHHHHHHHHHHTTTCTT-----CEEEEEEHHHHHHHHHHCCCG
T ss_pred cCCCccEEEEecCCCCccEEEEeCCCCCEEEeeE-ecHHHHHHHHHHHHHhCCC-----CcEEEeeHHHHHHHHhcCccc
Confidence 456899999997766666655455 56799999 8999999999999999997 68999999999987 222
Q ss_pred -CeeEEEecCHHHHHHHHHHHHHcCC
Q 029886 83 -GVAFRLIPESTQVKNALREMEKAGF 107 (186)
Q Consensus 83 -~~~f~~vP~~~qv~~A~~l~~~~g~ 107 (186)
--.++|||+.+.+++++++.+..++
T Consensus 203 ~~~~ivfiPs~es~e~i~~~~~~~~~ 228 (252)
T 4ev1_A 203 WLNQVVLVPSPESREYIRTLPKPPNT 228 (252)
T ss_dssp GGGGEEEECCHHHHHHHHTSCCCC--
T ss_pred ccceEEEECCHHHHHHHHhccccCCC
Confidence 2379999999999999998654443
No 4
>4e6z_A Apicoplast TIC22, putative; TIC complex, import protein, transport protein; 2.15A {Plasmodium falciparum 3D7}
Probab=98.89 E-value=4.6e-09 Score=89.96 Aligned_cols=87 Identities=15% Similarity=0.235 Sum_probs=70.0
Q ss_pred cCCCcEEEEEcCCCCeEEEEcCCCCceEEEeeeCHHHHHHHHHHHHhcCcccccCCeEEEEeeccchhhccccCeeEEEe
Q 029886 10 LAGVPVYALSNCNEEFVLVSGAKTGKSLGLMCFKKEDAEALLHQMKSMDPAMRKEGSRVVPVPLNKVFQLKVNGVAFRLI 89 (186)
Q Consensus 10 L~~VPVF~vtn~~g~p~l~~~~~~~~~~~lFf~~~~DA~~~L~~~k~~~p~~~~~~~kV~~v~L~~vy~l~~~~~~f~~v 89 (186)
-.|||||.+.+ +.+. .+++.++|+| |+++|+++.++++++++|. ... .+|.+++|..+..-.. .-.|.||
T Consensus 189 ~~gVPVF~~~~-----Lti~-k~~k~iiPlF-F~keDL~~~l~q~~~~~p~-~~~-~~I~V~~L~~ll~~~d-~~kivFI 258 (279)
T 4e6z_A 189 ELMYPVFYAEN-----LYIQ-KDGSNIIPLF-FDLEDLKEAIEEQKNKALS-KVD-YKIKVLNMVDLIFTED-HKKFGFV 258 (279)
T ss_dssp TCCSEEEEETT-----CCEE-CSSSEEEEEE-SSHHHHHHHHHHHHTTCSS-CCC-CCEEEEEHHHHHTCSC-CTTEEEE
T ss_pred CCCccEEEEee-----EEEe-eCCeEEEeeE-ecHHHHHHHHHHhhhcCCC-CCC-CceEEEhHHHHHhhCC-cCeEEEE
Confidence 35799999863 4444 5668899999 8999999999999999997 345 6899999988886532 2368999
Q ss_pred cCHHHHHHHHHHHHHcCCC
Q 029886 90 PESTQVKNALREMEKAGFS 108 (186)
Q Consensus 90 P~~~qv~~A~~l~~~~g~~ 108 (186)
|+++.+++++++ +.|..
T Consensus 259 Ps~eSlefi~~l--~~g~~ 275 (279)
T 4e6z_A 259 PSTQSVKYLDKL--NIGTK 275 (279)
T ss_dssp CCHHHHHHHHHH--HHSCC
T ss_pred CCHHHHHHHHHH--hcCCC
Confidence 999999999998 55553
No 5
>2z0r_A Putative uncharacterized protein TTHA0547; alpha/beta protein, structural genomics, unknown function; 2.30A {Thermus thermophilus}
Probab=83.26 E-value=2.4 Score=30.74 Aligned_cols=51 Identities=27% Similarity=0.322 Sum_probs=40.6
Q ss_pred CcEEEEEcCCCCeEEEEcCCCCceEEEeeeCHHHHHHHHHHHHhcCcccccCCeEEEEee
Q 029886 13 VPVYALSNCNEEFVLVSGAKTGKSLGLMCFKKEDAEALLHQMKSMDPAMRKEGSRVVPVP 72 (186)
Q Consensus 13 VPVF~vtn~~g~p~l~~~~~~~~~~~lFf~~~~DA~~~L~~~k~~~p~~~~~~~kV~~v~ 72 (186)
=|.|.+.+..|+.++..... ++..++| .|.+.|++|+... |. . |.+|.+.-
T Consensus 7 g~wY~L~~~~gEhl~L~~lg-~rlAliw-Ts~~~A~~f~~~~----p~-~--Gm~V~~l~ 57 (103)
T 2z0r_A 7 GTWYVLEGDPGEHLVVEALG-ERLSGIW-TSRELAEAFLAHH----PH-L--GMRVSALE 57 (103)
T ss_dssp SCEEEEESSTTCCCEEEETT-EEEEEEB-SCHHHHHHHHHTS----CS-S--CCEEEEEC
T ss_pred CCEEEecCCcCceeEEeccC-CceEEEE-echHHHHHHHhhC----Cc-c--ccEEeecc
Confidence 48999999899999888664 5667777 9999999999875 87 3 47887653
No 6
>4eo3_A Bacterioferritin comigratory protein/NADH dehydro; thioredoxin-fold, alpha-beta-aplha sandwich fold, antioxidan oxidoreductase, FMN binding; HET: FMN; 1.65A {Thermotoga maritima}
Probab=75.17 E-value=3.1 Score=35.20 Aligned_cols=74 Identities=15% Similarity=0.168 Sum_probs=49.7
Q ss_pred cCCCcEEEEEcCCCCeEEEEcCCCCceEEEeee-------CHHHHHHHHHHHHhcCcccccCCeEEEEeeccchhhc---
Q 029886 10 LAGVPVYALSNCNEEFVLVSGAKTGKSLGLMCF-------KKEDAEALLHQMKSMDPAMRKEGSRVVPVPLNKVFQL--- 79 (186)
Q Consensus 10 L~~VPVF~vtn~~g~p~l~~~~~~~~~~~lFf~-------~~~DA~~~L~~~k~~~p~~~~~~~kV~~v~L~~vy~l--- 79 (186)
++-+|=|++.|.+|+.+-.++-.|..++-+| . +..++..|- +.+- . |+.|..|+.|....+
T Consensus 1 ~ak~p~F~l~~~~G~~~~Lsd~~Gk~vvl~F-~p~~~tp~C~~e~~~~~----~~~~---~-~~~v~gis~D~~~~~~~f 71 (322)
T 4eo3_A 1 MARVKHFELLTDEGKTFTHVDLYGKYTILFF-FPKAGTSGSTREAVEFS----RENF---E-KAQVVGISRDSVEALKRF 71 (322)
T ss_dssp -CBCCCCEEEETTSCEEEGGGTTTSEEEEEE-CSSTTSHHHHHHHHHHH----HSCC---T-TEEEEEEESCCHHHHHHH
T ss_pred CCCCCCcEEECCCcCEEeHHHhCCCeEEEEE-ECCCCCCCCHHHHHHHH----HHhh---C-CCEEEEEeCCCHHHHHHH
Confidence 3568999999999999988877765555444 3 455565552 2222 2 489999999877765
Q ss_pred -cccCeeEEEecCH
Q 029886 80 -KVNGVAFRLIPES 92 (186)
Q Consensus 80 -~~~~~~f~~vP~~ 92 (186)
...++.|.++.|+
T Consensus 72 ~~~~~l~fp~l~D~ 85 (322)
T 4eo3_A 72 KEKNDLKVTLLSDP 85 (322)
T ss_dssp HHHHTCCSEEEECT
T ss_pred HHhhCCceEEEEcC
Confidence 3456666666664
No 7
>2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP}
Probab=74.37 E-value=5.2 Score=28.65 Aligned_cols=76 Identities=8% Similarity=0.009 Sum_probs=43.7
Q ss_pred CcEEEEEcCCCCeEEEEcCCCCceEEEeeeC------HHHHHHHHHHHHhcCcccccCCeEEEEeeccchhhc-----cc
Q 029886 13 VPVYALSNCNEEFVLVSGAKTGKSLGLMCFK------KEDAEALLHQMKSMDPAMRKEGSRVVPVPLNKVFQL-----KV 81 (186)
Q Consensus 13 VPVF~vtn~~g~p~l~~~~~~~~~~~lFf~~------~~DA~~~L~~~k~~~p~~~~~~~kV~~v~L~~vy~l-----~~ 81 (186)
+|-|.+++.+|..+-...-.+. .+-++|+. +.. ...|.++.+..++ .|+.|..|+.+.--+- ..
T Consensus 9 ~p~f~l~~~~G~~~~l~~~~gk-~vll~F~a~~C~~C~~~-~~~l~~l~~~~~~---~~~~vv~v~~d~~~~~~~~~~~~ 83 (152)
T 2lrn_A 9 APAITGIDLKGNSVSLNDFKGK-YVLVDFWFAGCSWCRKE-TPYLLKTYNAFKD---KGFTIYGVSTDRREEDWKKAIEE 83 (152)
T ss_dssp CCCCEEECSSSCEEESGGGTTS-EEEEEEECTTCTTHHHH-HHHHHHHHHHHTT---TTEEEEEEECCSCHHHHHHHHHH
T ss_pred CCCceeEcCCCCEEeHHHcCCC-EEEEEEECCCChhHHHH-HHHHHHHHHHhcc---CCeEEEEEEccCCHHHHHHHHHH
Confidence 7889999999998887765544 43343342 222 2234444333222 2488999988742111 33
Q ss_pred cCeeEEEecCHH
Q 029886 82 NGVAFRLIPEST 93 (186)
Q Consensus 82 ~~~~f~~vP~~~ 93 (186)
.++.|.++.+..
T Consensus 84 ~~~~~~~~~d~~ 95 (152)
T 2lrn_A 84 DKSYWNQVLLQK 95 (152)
T ss_dssp HTCCSEEEEECH
T ss_pred hCCCCeEEeccc
Confidence 455666666653
No 8
>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} SCOP: c.47.1.0
Probab=74.33 E-value=5.5 Score=28.55 Aligned_cols=81 Identities=11% Similarity=0.167 Sum_probs=45.8
Q ss_pred CCcEEEEEcCCCCeEEEEcCCCCceEEEeeeCH--HHHHH---HHHHHHhcCcccccCCeEEEEeeccchhhc-----cc
Q 029886 12 GVPVYALSNCNEEFVLVSGAKTGKSLGLMCFKK--EDAEA---LLHQMKSMDPAMRKEGSRVVPVPLNKVFQL-----KV 81 (186)
Q Consensus 12 ~VPVF~vtn~~g~p~l~~~~~~~~~~~lFf~~~--~DA~~---~L~~~k~~~p~~~~~~~kV~~v~L~~vy~l-----~~ 81 (186)
..|-|.+++.+|..+-...-.+. .+-++|+.. ..-.. .|.++....++ .|+.|..|+.+.--+. +.
T Consensus 13 ~~p~~~l~~~~g~~~~l~~~~gk-~vlv~f~~~~C~~C~~~~~~l~~l~~~~~~---~~v~~v~v~~d~~~~~~~~~~~~ 88 (165)
T 3or5_A 13 PAPSFSGVTVDGKPFSSASLKGK-AYIVNFFATWCPPCRSEIPDMVQVQKTWAS---RGFTFVGIAVNEQLPNVKNYMKT 88 (165)
T ss_dssp BCCCCEEECTTSCEEEGGGGTTC-EEEEEEECTTSHHHHHHHHHHHHHHHHHTT---TTEEEEEEECSCCHHHHHHHHHH
T ss_pred CCCCceeeCCCCCEechhHcCCC-EEEEEEEcCcCHHHHHHHHHHHHHHHHhcc---CCeEEEEEECCCCHHHHHHHHHH
Confidence 47899999999999887765544 443443421 11222 33444333332 2488888887752221 34
Q ss_pred cCeeEEEecCHHHHH
Q 029886 82 NGVAFRLIPESTQVK 96 (186)
Q Consensus 82 ~~~~f~~vP~~~qv~ 96 (186)
.++.|.++-+..++.
T Consensus 89 ~~~~~~~~~~~~~~~ 103 (165)
T 3or5_A 89 QGIIYPVMMATPELI 103 (165)
T ss_dssp HTCCSCEEECCHHHH
T ss_pred cCCCCceEecCHHHH
Confidence 456666666665433
No 9
>2yzh_A Probable thiol peroxidase; redox protein, antioxidant, oxidoreductase, STRU genomics, NPPSFA; 1.85A {Aquifex aeolicus}
Probab=72.27 E-value=13 Score=27.19 Aligned_cols=77 Identities=13% Similarity=0.123 Sum_probs=47.3
Q ss_pred CCcEEEEEcCCCCeEEEEcCCCCceEEEeee---CHHHHHHHHHHHHhcCcccccCCeEEEEeeccchhhc----cccCe
Q 029886 12 GVPVYALSNCNEEFVLVSGAKTGKSLGLMCF---KKEDAEALLHQMKSMDPAMRKEGSRVVPVPLNKVFQL----KVNGV 84 (186)
Q Consensus 12 ~VPVF~vtn~~g~p~l~~~~~~~~~~~lFf~---~~~DA~~~L~~~k~~~p~~~~~~~kV~~v~L~~vy~l----~~~~~ 84 (186)
..|-|.++|.+|..+-.+.-.+..++=.||. ++ -....+..+.+...++ .+ ++|..|+.+..-.+ +..++
T Consensus 26 ~~P~f~l~~~~G~~~~l~~~~gk~vvl~f~~~~~C~-~C~~~~~~l~~~~~~~-~~-v~vv~Is~d~~~~~~~~~~~~~~ 102 (171)
T 2yzh_A 26 RAPEAVVVTKDLQEKIVGGAKDVVQVIITVPSLDTP-VCETETKKFNEIMAGM-EG-VDVTVVSMDLPFAQKRFCESFNI 102 (171)
T ss_dssp BCCCEEEEETTSCEEEESSCCSSEEEEEECSCTTSH-HHHHHHHHHHHHTTTC-TT-EEEEEEESSCHHHHHHHHHHTTC
T ss_pred cCCceEEECCCCCEeeHHHhCCCeEEEEEECCCCCC-chHHHHHHHHHHHHHc-CC-ceEEEEeCCCHHHHHHHHHHcCC
Confidence 4789999999999998876654444433421 22 2334455555444555 45 99999998754333 23445
Q ss_pred -eEEEecC
Q 029886 85 -AFRLIPE 91 (186)
Q Consensus 85 -~f~~vP~ 91 (186)
.|.++.|
T Consensus 103 ~~~~~l~D 110 (171)
T 2yzh_A 103 QNVTVASD 110 (171)
T ss_dssp CSSEEEEC
T ss_pred CCeEEeec
Confidence 5666665
No 10
>1xvw_A Hypothetical protein RV2238C/MT2298; thioredoxin fold, oxidized cystein sulfenic acid, structural genomics, PSI; 1.90A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1xxu_A
Probab=65.53 E-value=10 Score=27.23 Aligned_cols=79 Identities=19% Similarity=0.364 Sum_probs=48.0
Q ss_pred CCcEEEEEcCCCCeEEEEcCCCCceEEEeee----CHHHHHHHHHHHHhcCcccccCCeEEEEeeccchhhc----cccC
Q 029886 12 GVPVYALSNCNEEFVLVSGAKTGKSLGLMCF----KKEDAEALLHQMKSMDPAMRKEGSRVVPVPLNKVFQL----KVNG 83 (186)
Q Consensus 12 ~VPVF~vtn~~g~p~l~~~~~~~~~~~lFf~----~~~DA~~~L~~~k~~~p~~~~~~~kV~~v~L~~vy~l----~~~~ 83 (186)
.+|-|.++|.+|..+-...-.+.+.+-++|+ +. .....+..+.+...++...|+.|..|+.+..-.+ +..+
T Consensus 14 ~~p~f~l~~~~G~~~~l~~~~gk~~vvl~F~~a~~C~-~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~ 92 (160)
T 1xvw_A 14 TAPDFTLRDQNQQLVTLRGYRGAKNVLLVFFPLAFTG-ICQGELDQLRDHLPEFENDDSAALAISVGPPPTHKIWATQSG 92 (160)
T ss_dssp BCCCCEEECTTSCEEEGGGGTTTCEEEEEECSCTTSS-HHHHHHHHHHHTGGGTSSSSEEEEEEESCCHHHHHHHHHHHT
T ss_pred CCCCeEeEcCCCCEEeHHHhcCCCCEEEEEECCCCCC-chHHHHHHHHHHHHHHHHCCcEEEEEeCCCHHHHHHHHHhcC
Confidence 4789999999999888776555423333334 22 2344455555444444433589999998754333 3345
Q ss_pred eeEEEecC
Q 029886 84 VAFRLIPE 91 (186)
Q Consensus 84 ~~f~~vP~ 91 (186)
+.|.++.+
T Consensus 93 ~~~~~~~d 100 (160)
T 1xvw_A 93 FTFPLLSD 100 (160)
T ss_dssp CCSCEEEC
T ss_pred CCceEEec
Confidence 56666666
No 11
>3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog; bacterioferritin comigratory protein, oxidore; HET: CIT; 2.15A {Sulfolobus solfataricus} SCOP: c.47.1.0
Probab=63.44 E-value=10 Score=27.59 Aligned_cols=79 Identities=10% Similarity=0.095 Sum_probs=47.7
Q ss_pred CCcEEEEEcCCCCeEEEEcCCCCc-eEEEeee----CHHHHHHHHHHHHhcCcccccCCeEEEEeeccchhhc----ccc
Q 029886 12 GVPVYALSNCNEEFVLVSGAKTGK-SLGLMCF----KKEDAEALLHQMKSMDPAMRKEGSRVVPVPLNKVFQL----KVN 82 (186)
Q Consensus 12 ~VPVF~vtn~~g~p~l~~~~~~~~-~~~lFf~----~~~DA~~~L~~~k~~~p~~~~~~~kV~~v~L~~vy~l----~~~ 82 (186)
..|-|.+++.+|..+-...-.+.. ++=.| + +. .....+..+.+...++...|+.|..|+.+..-.+ +..
T Consensus 7 ~~P~f~l~~~~G~~~~l~~~~gk~~vvl~F-~~a~~C~-~C~~~~~~l~~~~~~~~~~~v~vv~vs~d~~~~~~~~~~~~ 84 (161)
T 3drn_A 7 KAPLFEGIADNGEKISLSDYIGKHNIVLYF-YPKDDTP-GSTREASAFRDNWDLLKDYDVVVIGVSSDDINSHKRFKEKY 84 (161)
T ss_dssp BCCCCEEEETTSCEEEGGGTTTTSEEEEEE-CSCTTCH-HHHHHHHHHHHTHHHHHTTCEEEEEEESCCHHHHHHHHHHT
T ss_pred cCCCeEeecCCCCEEEHHHhcCCCCEEEEE-EcCCCCC-chHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHHHh
Confidence 478999999999998877655544 44344 4 11 1222233333222233333589999999865544 445
Q ss_pred CeeEEEecCH
Q 029886 83 GVAFRLIPES 92 (186)
Q Consensus 83 ~~~f~~vP~~ 92 (186)
++.|.++.+.
T Consensus 85 ~~~~~~~~d~ 94 (161)
T 3drn_A 85 KLPFILVSDP 94 (161)
T ss_dssp TCCSEEEECT
T ss_pred CCCceEEECC
Confidence 6778888773
No 12
>3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A
Probab=61.67 E-value=2.2 Score=31.14 Aligned_cols=80 Identities=15% Similarity=0.201 Sum_probs=46.7
Q ss_pred CCcEEE--EEcCCCCeEEEEcCCCCceEEEeeeC---HHHHHHHHHHHHhcCcccccCCeEEEEeeccchhhc----ccc
Q 029886 12 GVPVYA--LSNCNEEFVLVSGAKTGKSLGLMCFK---KEDAEALLHQMKSMDPAMRKEGSRVVPVPLNKVFQL----KVN 82 (186)
Q Consensus 12 ~VPVF~--vtn~~g~p~l~~~~~~~~~~~lFf~~---~~DA~~~L~~~k~~~p~~~~~~~kV~~v~L~~vy~l----~~~ 82 (186)
.+|-|. ++|.+|..+-.+.-.+..++=+| +. -......+..+.+...++...|++|..|+.+..-.+ +..
T Consensus 12 ~~P~f~~~l~~~~G~~~~l~~~~gk~~vl~F-~~~~~c~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~ 90 (163)
T 3gkn_A 12 PAATFDLPLSLSGGTQTTLRAHAGHWLVIYF-YPKDSTPGATTEGLDFNALLPEFDKAGAKILGVSRDSVKSHDNFCAKQ 90 (163)
T ss_dssp CGGGGGCCEECSTTCEECSGGGTTSCEEEEE-CSCTTSHHHHHHHHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHH
T ss_pred cCCCccccccCCCCCEEEHHHhCCCcEEEEE-eCCCCCCcHHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHh
Confidence 478899 99999998887765554344444 32 122333333333333333333589999999854444 334
Q ss_pred CeeEEEecCH
Q 029886 83 GVAFRLIPES 92 (186)
Q Consensus 83 ~~~f~~vP~~ 92 (186)
++.|.++.+.
T Consensus 91 ~~~~~~~~d~ 100 (163)
T 3gkn_A 91 GFAFPLVSDG 100 (163)
T ss_dssp CCSSCEEECT
T ss_pred CCCceEEECC
Confidence 5666666553
No 13
>1psq_A Probable thiol peroxidase; structural genomics, NYSGXRC, PSI, structure initiative, NEW YORK SGX research center for STRU genomics; 2.30A {Streptococcus pneumoniae} SCOP: c.47.1.10
Probab=61.64 E-value=12 Score=27.32 Aligned_cols=78 Identities=8% Similarity=0.070 Sum_probs=46.5
Q ss_pred CCcEEEEEcCCCCeEEEEcCCCCceEEEeee-C-HHHHHHHHHHHHhcCcccccCCeEEEEeeccchhhc----cccCe-
Q 029886 12 GVPVYALSNCNEEFVLVSGAKTGKSLGLMCF-K-KEDAEALLHQMKSMDPAMRKEGSRVVPVPLNKVFQL----KVNGV- 84 (186)
Q Consensus 12 ~VPVF~vtn~~g~p~l~~~~~~~~~~~lFf~-~-~~DA~~~L~~~k~~~p~~~~~~~kV~~v~L~~vy~l----~~~~~- 84 (186)
..|-|.++|.+|..+-.+.-.|..++=.||. + -.-....+..+.+...++ .+ +.|..|+.+..-.+ +..++
T Consensus 21 ~~P~f~l~~~~G~~v~l~~~~gk~vvl~F~~~~~c~~C~~~~~~l~~~~~~~-~~-v~vv~is~d~~~~~~~~~~~~~~~ 98 (163)
T 1psq_A 21 KALDFSLTTTDLSKKSLADFDGKKKVLSVVPSIDTGICSTQTRRFNEELAGL-DN-TVVLTVSMDLPFAQKRWCGAEGLD 98 (163)
T ss_dssp BCCCCEEECTTSCEEEGGGGTTSEEEEEECSCTTSHHHHHHHHHHHHHTTTC-TT-EEEEEEESSCHHHHHHHHHHHTCT
T ss_pred CCCCEEEEcCCCcEeeHHHhCCCEEEEEEECCCCCCccHHHHHHHHHHHHHc-CC-cEEEEEECCCHHHHHHHHHhcCCC
Confidence 4788999999999988776554444333421 1 112233344444444445 44 99999998754433 33455
Q ss_pred eEEEecC
Q 029886 85 AFRLIPE 91 (186)
Q Consensus 85 ~f~~vP~ 91 (186)
.|.++.|
T Consensus 99 ~~~~l~D 105 (163)
T 1psq_A 99 NAIMLSD 105 (163)
T ss_dssp TSEEEEC
T ss_pred CcEEecC
Confidence 6666666
No 14
>3p7x_A Probable thiol peroxidase; thioredoxin fold, oxidoreductase; HET: PG4; 1.96A {Staphylococcus aureus} SCOP: c.47.1.0
Probab=58.83 E-value=15 Score=26.78 Aligned_cols=78 Identities=12% Similarity=0.106 Sum_probs=46.6
Q ss_pred CCcEEEEEcCCCCeEEEEcCCCCceEEEeeeC--HHHHHHHHHHHHhcCcccccCCeEEEEeeccchhhc----cccCe-
Q 029886 12 GVPVYALSNCNEEFVLVSGAKTGKSLGLMCFK--KEDAEALLHQMKSMDPAMRKEGSRVVPVPLNKVFQL----KVNGV- 84 (186)
Q Consensus 12 ~VPVF~vtn~~g~p~l~~~~~~~~~~~lFf~~--~~DA~~~L~~~k~~~p~~~~~~~kV~~v~L~~vy~l----~~~~~- 84 (186)
..|=|.++|.+|..+-.+.-.|..++=+||.+ -.-....+..+.+...+ .+ +.|..|+.+....+ +..++
T Consensus 25 ~aP~f~l~~~~G~~~~l~~~~Gk~vvl~f~~~~~c~~C~~~~~~l~~~~~~--~~-~~vv~is~d~~~~~~~~~~~~~~~ 101 (166)
T 3p7x_A 25 FAPDFTVLDNDLNQVTLADYAGKKKLISVVPSIDTGVCDQQTRKFNSDASK--EE-GIVLTISADLPFAQKRWCASAGLD 101 (166)
T ss_dssp BCCCCEEECTTSCEEEGGGGTTSCEEEEECSCTTSHHHHHHHHHHHHHSCT--TT-SEEEEEESSCHHHHHHHHHHHTCS
T ss_pred CCCCeEEEcCCCCEEeHHHhCCCcEEEEEECCCCCCccHHHHHHHHHHhhc--CC-CEEEEEECCCHHHHHHHHHHcCCC
Confidence 47889999999999887765554444444321 11122222333332223 34 89999998865554 34466
Q ss_pred eEEEecCH
Q 029886 85 AFRLIPES 92 (186)
Q Consensus 85 ~f~~vP~~ 92 (186)
.|.++.|.
T Consensus 102 ~~~~l~D~ 109 (166)
T 3p7x_A 102 NVITLSDH 109 (166)
T ss_dssp SCEEEECT
T ss_pred ceEEccCC
Confidence 67777766
No 15
>2wfc_A Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidant enzymes; 1.75A {Arenicola marina}
Probab=58.55 E-value=8.3 Score=28.91 Aligned_cols=77 Identities=13% Similarity=0.226 Sum_probs=45.7
Q ss_pred CCcEEEEE-cCCCCeEEEEcC-CCCceEEEee------eCHH-HHHHHHHHHHhcCcccccCCe-EEEEeeccchhhc--
Q 029886 12 GVPVYALS-NCNEEFVLVSGA-KTGKSLGLMC------FKKE-DAEALLHQMKSMDPAMRKEGS-RVVPVPLNKVFQL-- 79 (186)
Q Consensus 12 ~VPVF~vt-n~~g~p~l~~~~-~~~~~~~lFf------~~~~-DA~~~L~~~k~~~p~~~~~~~-kV~~v~L~~vy~l-- 79 (186)
..|-|.++ +.+|..+-.+.- .+..++-+|| .+.. ++-.+.+.. .++...|+ +|..|+.+....+
T Consensus 8 ~aP~f~l~~~~~G~~v~L~d~~~Gk~vvl~f~~a~wcp~C~~~e~p~l~~~~----~~~~~~gv~~vv~Is~d~~~~~~~ 83 (167)
T 2wfc_A 8 KLPAVTVFGATPNDKVNMAELFAGKKGVLFAVPGAFTPGSSKTHLPGYVEQA----AAIHGKGVDIIACMAVNDSFVMDA 83 (167)
T ss_dssp BCCCCEEESSSTTCEEEHHHHTTTSEEEEEEESCTTCHHHHHTHHHHHHHTH----HHHHHTTCCEEEEEESSCHHHHHH
T ss_pred cCCCcEeecCCCCcEEeHHHHhCCCcEEEEEeCCCCCCCCCHHHHHHHHHHH----HHHHHCCCCEEEEEeCCCHHHHHH
Confidence 47999999 999998887764 5555544443 1333 444433322 22222258 9999998765443
Q ss_pred --cccCee--EEEecCH
Q 029886 80 --KVNGVA--FRLIPES 92 (186)
Q Consensus 80 --~~~~~~--f~~vP~~ 92 (186)
+..++. |.++.|.
T Consensus 84 ~~~~~~~~~~fp~l~D~ 100 (167)
T 2wfc_A 84 WGKAHGADDKVQMLADP 100 (167)
T ss_dssp HHHHTTCTTTSEEEECT
T ss_pred HHHhcCCCcceEEEECC
Confidence 334444 6666663
No 16
>4g2e_A Peroxiredoxin; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 1.40A {Sulfolobus tokodaii} PDB: 2ywn_A 3hjp_A
Probab=58.13 E-value=2.6 Score=31.13 Aligned_cols=77 Identities=12% Similarity=0.151 Sum_probs=46.6
Q ss_pred CCcEEEEEcCCCCeEEEEcCCCCceEEEeee------CHHHHHHHHHHHHhcCcccccCCeEEEEeeccchhhc----cc
Q 029886 12 GVPVYALSNCNEEFVLVSGAKTGKSLGLMCF------KKEDAEALLHQMKSMDPAMRKEGSRVVPVPLNKVFQL----KV 81 (186)
Q Consensus 12 ~VPVF~vtn~~g~p~l~~~~~~~~~~~lFf~------~~~DA~~~L~~~k~~~p~~~~~~~kV~~v~L~~vy~l----~~ 81 (186)
..|=|+++|.+|+.+-.+.-.|..++-.||. +..+. ..+.+...+....|+.|..|+.+....+ +.
T Consensus 9 ~aPdF~l~~~~G~~~~l~d~~Gk~vvl~f~~~~~c~~C~~e~----~~l~~~~~~~~~~~~~~v~vs~d~~~~~~~~~~~ 84 (157)
T 4g2e_A 9 LAPDFELPDTELKKVKLSALKGKVVVLAFYPAAFTQVCTKEM----CTFRDSMAKFNQVNAVVLGISVDPPFSNKAFKEH 84 (157)
T ss_dssp BCCCCEEEBTTSCEEEGGGGTTSCEEEEECSCTTCCC----------CCSCGGGGGGGCSSEEEEEESSCHHHHHHHHHH
T ss_pred CCcCeEeECCCCCEEeHHHHCCCeEEEEecCCCCCCccccch----hhcccccccccccCceEeeecccchhHHHHHHHH
Confidence 4799999999999988876665545444421 23322 2233323333333588888888876655 44
Q ss_pred cCeeEEEecCH
Q 029886 82 NGVAFRLIPES 92 (186)
Q Consensus 82 ~~~~f~~vP~~ 92 (186)
.++.|.++.|.
T Consensus 85 ~~~~~p~l~D~ 95 (157)
T 4g2e_A 85 NKLNFTILSDY 95 (157)
T ss_dssp TTCCSEEEECT
T ss_pred cCCcEEEEEcC
Confidence 57777777665
No 17
>4hde_A SCO1/SENC family lipoprotein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; HET: MSE; 1.32A {Bacillus anthracis}
Probab=57.42 E-value=11 Score=28.16 Aligned_cols=61 Identities=8% Similarity=0.120 Sum_probs=35.1
Q ss_pred CCcEEEEEcCCCCeEEEEcCCCCceEEEeee------CHHHHHHHHHHHHhcCcccccCCeEEEEeecc
Q 029886 12 GVPVYALSNCNEEFVLVSGAKTGKSLGLMCF------KKEDAEALLHQMKSMDPAMRKEGSRVVPVPLN 74 (186)
Q Consensus 12 ~VPVF~vtn~~g~p~l~~~~~~~~~~~lFf~------~~~DA~~~L~~~k~~~p~~~~~~~kV~~v~L~ 74 (186)
.+|=|+++|.+|..+-.+.-.|..++=.|++ ++..... +.++.+.-.+-+.. +++..|++|
T Consensus 11 ~~PdF~L~d~~G~~v~l~d~~Gk~vll~F~~t~Cp~~Cp~~~~~-l~~l~~~~~~~~~~-v~~v~isvD 77 (170)
T 4hde_A 11 DLETFQFTNQDGKPFGTKDLKGKVWVADFMFTNCQTVCPPMTAN-MAKLQKMAKEEKLD-VQFVSFSVD 77 (170)
T ss_dssp CCCCCEEECTTSCEEEHHHHTTSCEEEEEECTTCSSSHHHHHHH-HHHHHHHHHHTTCC-CEEEEEESC
T ss_pred cCCCcEEECCCCCEEeHHHhCCCEEEEEEECCCCCCcccHHHHH-HHHHHHhhhccccc-ceeEeeecC
Confidence 4889999999999998877665444433432 2332222 22222221222223 778888876
No 18
>1q98_A Thiol peroxidase, TPX; structural genomics, NYSGXRC, PSI, protein structure initiative; 1.90A {Haemophilus influenzae} SCOP: c.47.1.10
Probab=57.36 E-value=31 Score=25.10 Aligned_cols=75 Identities=9% Similarity=0.044 Sum_probs=48.1
Q ss_pred CCcEEEEEcCCCCeEEEEcCCCCceEEEeee------CHHHHHHHHHHHHhcCcccccCCeEEEEeeccchhhc----cc
Q 029886 12 GVPVYALSNCNEEFVLVSGAKTGKSLGLMCF------KKEDAEALLHQMKSMDPAMRKEGSRVVPVPLNKVFQL----KV 81 (186)
Q Consensus 12 ~VPVF~vtn~~g~p~l~~~~~~~~~~~lFf~------~~~DA~~~L~~~k~~~p~~~~~~~kV~~v~L~~vy~l----~~ 81 (186)
..|-|.++|.+|..+-.+.-.|..++=.||. +..++..+ +++..+. .+ ++|..|+.+....+ +.
T Consensus 22 ~~P~f~l~~~~G~~v~l~~~~gk~vvl~f~~~~~c~~C~~e~~~l-~~~~~~~----~~-v~vv~Is~d~~~~~~~~~~~ 95 (165)
T 1q98_A 22 IVENFILVGNDLADVALNDFASKRKVLNIFPSIDTGVCATSVRKF-NQQAAKL----SN-TIVLCISADLPFAQARFCGA 95 (165)
T ss_dssp BCCCCEEECTTSCEEEGGGGTTSEEEEEECSCSCSSCCCHHHHHH-HHHHHHS----TT-EEEEEEESSCHHHHTTCTTT
T ss_pred CCCCeEEECCCCCEEehHHhCCCeEEEEEECCCCCCccHHHHHHH-HHHHHHc----CC-CEEEEEeCCCHHHHHHHHHH
Confidence 4789999999999888776555444333321 34444433 3333332 34 99999999866554 44
Q ss_pred cCe-eEEEecCH
Q 029886 82 NGV-AFRLIPES 92 (186)
Q Consensus 82 ~~~-~f~~vP~~ 92 (186)
.++ .|.++-|.
T Consensus 96 ~~~~~~~~l~D~ 107 (165)
T 1q98_A 96 EGIENAKTVSTF 107 (165)
T ss_dssp TTCTTEEEEECT
T ss_pred cCCCceEEeecc
Confidence 577 68888775
No 19
>3zrd_A Thiol peroxidase; oxidoreductase, 2Cys peroxiredoxin, thioredoxin-fold, ROS PR; 1.74A {Yersinia pseudotuberculosis} PDB: 2xpe_A 2xpd_A 3zre_A 2yjh_A 4af2_A 3hvs_A* 1qxh_A* 3i43_A* 3hvv_A 3hvx_A
Probab=56.52 E-value=29 Score=26.55 Aligned_cols=75 Identities=9% Similarity=0.034 Sum_probs=50.3
Q ss_pred CCcEEEEEcCCCCeEEEEcCCCCceEEEeee------CHHHHHHHHHHHHhcCcccccCCeEEEEeeccchhhc----cc
Q 029886 12 GVPVYALSNCNEEFVLVSGAKTGKSLGLMCF------KKEDAEALLHQMKSMDPAMRKEGSRVVPVPLNKVFQL----KV 81 (186)
Q Consensus 12 ~VPVF~vtn~~g~p~l~~~~~~~~~~~lFf~------~~~DA~~~L~~~k~~~p~~~~~~~kV~~v~L~~vy~l----~~ 81 (186)
..|=|.++|.+|..+-.+.-.|..++=+||. +..+... |+++..+. .+ +.|..|+.|....+ +.
T Consensus 57 ~aPdf~l~d~~G~~v~L~d~~Gk~vvl~F~~~~~c~~C~~e~~~-l~~l~~~~----~~-v~vv~Is~D~~~~~~~~~~~ 130 (200)
T 3zrd_A 57 KAKDFTLVAKDLSDVALSSFAGKRKVLNIFPSIDTGVCAASVRK-FNQLAGEL----EN-TVVLCISSDLPFAQSRFCGA 130 (200)
T ss_dssp BCCCCEEECTTSCEEEGGGGTTSEEEEEECSCCCCSCCCHHHHH-HHHHHHTS----TT-EEEEEEESSCHHHHTTCTTT
T ss_pred CCCCeEEECCCCCEEcHHHhCCCcEEEEEECCCCCchhHHHHHH-HHHHHHHh----CC-CEEEEEECCCHHHHHHHHHH
Confidence 4788999999999988776655444434421 3444444 34443332 34 99999999976665 45
Q ss_pred cCe-eEEEecCH
Q 029886 82 NGV-AFRLIPES 92 (186)
Q Consensus 82 ~~~-~f~~vP~~ 92 (186)
.++ .|.++.|.
T Consensus 131 ~~~~~f~~l~D~ 142 (200)
T 3zrd_A 131 EGLSNVITLSTL 142 (200)
T ss_dssp TTCTTEEEEETT
T ss_pred cCCCCceEEecC
Confidence 678 89999886
No 20
>3ixr_A Bacterioferritin comigratory protein; alpha beta protein, oxidoreductase; 1.60A {Xylella fastidiosa}
Probab=55.19 E-value=2.1 Score=32.34 Aligned_cols=80 Identities=13% Similarity=0.069 Sum_probs=45.6
Q ss_pred CcEEEEEcCCCCeEEEEcCCCCceEEEeee-C-HHHHHHHHHHHHhcCcccccCCeEEEEeeccchhhc----cccCeeE
Q 029886 13 VPVYALSNCNEEFVLVSGAKTGKSLGLMCF-K-KEDAEALLHQMKSMDPAMRKEGSRVVPVPLNKVFQL----KVNGVAF 86 (186)
Q Consensus 13 VPVF~vtn~~g~p~l~~~~~~~~~~~lFf~-~-~~DA~~~L~~~k~~~p~~~~~~~kV~~v~L~~vy~l----~~~~~~f 86 (186)
+|=|.++|.+|..+-.+.-.+..++=+||. + -.-....+..+.+...++...|+.|..|+.+....+ +..++.|
T Consensus 31 aP~f~l~~~~G~~v~l~d~~Gk~vvl~f~~~~~c~~C~~el~~l~~l~~~~~~~~~~vv~Vs~D~~~~~~~~~~~~~~~f 110 (179)
T 3ixr_A 31 LLNHPLMLSGSTCKTLSDYTNQWLVLYFYPKDNTPGSSTEGLEFNLLLPQFEQINATVLGVSRDSVKSHDSFCAKQGFTF 110 (179)
T ss_dssp HHHCCEEEGGGEEECGGGGTTSEEEEEECSCTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESCCHHHHHHHHHHHTCCS
T ss_pred CCCeeEECCCCCEEeHHHHCCCCEEEEEEcCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCce
Confidence 688999999999887776555434444421 1 111222222222222233333589999998865554 3446667
Q ss_pred EEecCH
Q 029886 87 RLIPES 92 (186)
Q Consensus 87 ~~vP~~ 92 (186)
.++.|.
T Consensus 111 ~~l~D~ 116 (179)
T 3ixr_A 111 PLVSDS 116 (179)
T ss_dssp CEEECT
T ss_pred EEEECC
Confidence 777663
No 21
>3mng_A Peroxiredoxin-5, mitochondrial; peroxidase, PRXV, substrate analog, DTT, oxidoreductase; 1.45A {Homo sapiens} SCOP: c.47.1.10 PDB: 2vl3_A 1oc3_A 2vl2_A 2vl9_A 1urm_A 1hd2_A 1h4o_A
Probab=52.92 E-value=7.8 Score=29.50 Aligned_cols=77 Identities=17% Similarity=0.234 Sum_probs=47.2
Q ss_pred CCcEEEEE-cCCCCeEEEEc-CCCCceEEEee------eCH-HHHHHHHHHHHhcCcccccCCeEEEE-eeccchhhc--
Q 029886 12 GVPVYALS-NCNEEFVLVSG-AKTGKSLGLMC------FKK-EDAEALLHQMKSMDPAMRKEGSRVVP-VPLNKVFQL-- 79 (186)
Q Consensus 12 ~VPVF~vt-n~~g~p~l~~~-~~~~~~~~lFf------~~~-~DA~~~L~~~k~~~p~~~~~~~kV~~-v~L~~vy~l-- 79 (186)
..|-|++. +.+|+.+-.+. -.++.++-+|| .+. +++-.|.+.. .++...|+.|.. ++.+....+
T Consensus 20 ~aPdf~l~~~~~g~~v~L~d~~~gk~vvL~f~pa~wcp~C~~~e~p~l~~~~----~~~~~~gv~vv~~iS~D~~~~~~~ 95 (173)
T 3mng_A 20 AIPAVEVFEGEPGNKVNLAELFKGKKGVLFGVPGAFTPGCSKTHLPGFVEQA----EALKAKGVQVVACLSVNDAFVTGE 95 (173)
T ss_dssp BCCCCEEECSSTTCEEEHHHHTTTSEEEEEECSCTTCHHHHHTHHHHHHHTH----HHHHTTTCCEEEEEESSCHHHHHH
T ss_pred CCCCeEeeeCCCCCEEEhHHHhCCCcEEEEEEeCCCCCCCCHHHHHHHHHHH----HHHHhCCCEEEEEEcCCCHHHHHH
Confidence 47999999 99999888776 35554554553 234 3444443332 222222588885 998876655
Q ss_pred --cccCee--EEEecCH
Q 029886 80 --KVNGVA--FRLIPES 92 (186)
Q Consensus 80 --~~~~~~--f~~vP~~ 92 (186)
+..++. |.++.|.
T Consensus 96 f~~~~~~~~~fp~l~D~ 112 (173)
T 3mng_A 96 WGRAHKAEGKVRLLADP 112 (173)
T ss_dssp HHHHTTCTTTCEEEECT
T ss_pred HHHHhCCCCceEEEECC
Confidence 334554 7777775
No 22
>3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} SCOP: c.47.1.0
Probab=49.50 E-value=58 Score=22.07 Aligned_cols=59 Identities=14% Similarity=0.199 Sum_probs=36.0
Q ss_pred CCcEEEEEcCCCCeEEEEcCCCCceEEEeeeCH-----HHHHHHHHHHHhcCcccccCCeEEEEeeccc
Q 029886 12 GVPVYALSNCNEEFVLVSGAKTGKSLGLMCFKK-----EDAEALLHQMKSMDPAMRKEGSRVVPVPLNK 75 (186)
Q Consensus 12 ~VPVF~vtn~~g~p~l~~~~~~~~~~~lFf~~~-----~DA~~~L~~~k~~~p~~~~~~~kV~~v~L~~ 75 (186)
..|-|.+++.+|..+-... .+ +.+-++|++. ......|.++.+..++ . ++.|..|+.+.
T Consensus 14 ~~p~~~l~~~~g~~~~l~~-~g-k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~--~-~~~~v~v~~d~ 77 (145)
T 3erw_A 14 VPAVFLMKTIEGEDISIPN-KG-QKTILHFWTSWCPPCKKELPQFQSFYDAHPS--D-SVKLVTVNLVN 77 (145)
T ss_dssp SCCEEEEECTTSCEEEESC-TT-SEEEEEEECSSCHHHHHHHHHHHHHHHHCCC--S-SEEEEEEECGG
T ss_pred cCCCceeecCCCCEEeHHH-CC-CEEEEEEECCCCHHHHHHHHHHHHHHHHcCC--C-CEEEEEEEccC
Confidence 4899999999999988876 54 4444443421 1122344555444442 2 38888887653
No 23
>2y9j_Y Lipoprotein PRGK, protein PRGK; protein transport, type III secretion, IR1, inner membrane R C24-fold; 6.40A {Salmonella enterica subsp}
Probab=49.06 E-value=70 Score=24.57 Aligned_cols=63 Identities=8% Similarity=0.112 Sum_probs=40.2
Q ss_pred eCHHHHHHHHHHHHhcCcccccCCeEEEEeeccchhhccccCeeEEEecCHHHHHHHHHHHHHcCCCCCCCCCc-cchH
Q 029886 42 FKKEDAEALLHQMKSMDPAMRKEGSRVVPVPLNKVFQLKVNGVAFRLIPESTQVKNALREMEKAGFSDDAFAGV-PVFQ 119 (186)
Q Consensus 42 ~~~~DA~~~L~~~k~~~p~~~~~~~kV~~v~L~~vy~l~~~~~~f~~vP~~~qv~~A~~l~~~~g~~~~~f~GV-PlF~ 119 (186)
++.+||.+.++.|..++=. +++..= .++| .--+|| ..++..|+.++..+|....++.|. =+|-
T Consensus 7 L~~~da~~i~~~L~~~~I~-----y~~~~~--------~~~g-~~I~Vp-~~~~~~ar~~La~~GLP~~~~~g~~elf~ 70 (170)
T 2y9j_Y 7 LDQEQANEVIAVLQMHNIE-----ANKIDS--------GKLG-YSITVA-EPDFTAAVYWIKTYQLPPRPRVEIAQMFP 70 (170)
T ss_dssp ECHHHHHHHHHHHHHTTCC-----EEEEEC--------TTSC-EEEEEC-GGGHHHHHHHHHHTTCSCCCCCCTTCCTT
T ss_pred CCHHHHHHHHHHHHHcCCC-----EEEecC--------CCCC-eEEEEC-HHHHHHHHHHHHHcCCCCCCCCCHHHHhC
Confidence 7999999999999876311 222100 0001 122677 788999999999999865555554 4444
No 24
>3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa}
Probab=48.37 E-value=24 Score=24.41 Aligned_cols=49 Identities=8% Similarity=0.228 Sum_probs=33.1
Q ss_pred HHHHhc-----CCCcEEEEEcCCCCeEEEEcCCCCceEEEeeeCHHHHHHHHHHHH
Q 029886 5 AIEERL-----AGVPVYALSNCNEEFVLVSGAKTGKSLGLMCFKKEDAEALLHQMK 55 (186)
Q Consensus 5 ~I~ekL-----~~VPVF~vtn~~g~p~l~~~~~~~~~~~lFf~~~~DA~~~L~~~k 55 (186)
++.+++ .++|.+.+-|.+|..+-.... +.....-.++.++..++|+++.
T Consensus 79 ~l~~~~~v~~~~~~Pt~~~~d~~G~~~~~~~g--~~~~~~~~~~~~~l~~~l~~l~ 132 (133)
T 3fk8_A 79 ELSQAYGDPIQDGIPAVVVVNSDGKVRYTTKG--GELANARKMSDQGIYDFFAKIT 132 (133)
T ss_dssp HHHHHTTCGGGGCSSEEEEECTTSCEEEECCS--CTTTTGGGSCHHHHHHHHHHHH
T ss_pred HHHHHhCCccCCccceEEEECCCCCEEEEecC--CcccccccCCHHHHHHHHHHhc
Confidence 445554 579999999999987765422 1121222268999999999875
No 25
>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B}
Probab=45.76 E-value=57 Score=22.82 Aligned_cols=47 Identities=6% Similarity=0.008 Sum_probs=30.9
Q ss_pred HHHHhcC----CCcEEEEEcCCCCeEEEEcCCCCceEEEeeeCHHHHHHHHHHHHhcCcc
Q 029886 5 AIEERLA----GVPVYALSNCNEEFVLVSGAKTGKSLGLMCFKKEDAEALLHQMKSMDPA 60 (186)
Q Consensus 5 ~I~ekL~----~VPVF~vtn~~g~p~l~~~~~~~~~~~lFf~~~~DA~~~L~~~k~~~p~ 60 (186)
++.+.+. ++|.+.+.|.+|..+-.. .|. .+.++..++|+++++..+.
T Consensus 94 ~~~~~~~~~v~~~P~~~lid~~G~i~~~~-------~g~--~~~~~l~~~l~~l~~~~~~ 144 (151)
T 3raz_A 94 NFMKTYGNTVGVLPFTVVEAPKCGYRQTI-------TGE--VNEKSLTDAVKLAHSKCRE 144 (151)
T ss_dssp HHHHTTTCCSCCSSEEEEEETTTTEEEEC-------CSC--CCHHHHHHHHHHHHTC---
T ss_pred HHHHHhCCccCCCCEEEEECCCCcEEEEE-------CCC--CCHHHHHHHHHHHHHHhhc
Confidence 3455544 789888888888764433 112 4788899999999887654
No 26
>2jsy_A Probable thiol peroxidase; solution structure, antioxidant, oxidoreductase; NMR {Bacillus subtilis} PDB: 2jsz_A
Probab=43.92 E-value=20 Score=25.89 Aligned_cols=78 Identities=10% Similarity=0.115 Sum_probs=46.8
Q ss_pred CCcEEEEEcCCCCeEEEEcCCCCceEEEeeeCH--HHHHHHHHHHHhcCcccccCCeEEEEeeccchhhc----cccCe-
Q 029886 12 GVPVYALSNCNEEFVLVSGAKTGKSLGLMCFKK--EDAEALLHQMKSMDPAMRKEGSRVVPVPLNKVFQL----KVNGV- 84 (186)
Q Consensus 12 ~VPVF~vtn~~g~p~l~~~~~~~~~~~lFf~~~--~DA~~~L~~~k~~~p~~~~~~~kV~~v~L~~vy~l----~~~~~- 84 (186)
.+|-|.++|.+|..+-.+.-.+..++=.||.+- .-..+.+..+++...++ .+ ++|..|+.+..-.+ +..++
T Consensus 23 ~~p~f~l~~~~G~~~~l~~~~gk~~vl~F~~~~~C~~C~~~~~~l~~l~~~~-~~-~~vv~is~d~~~~~~~~~~~~~~~ 100 (167)
T 2jsy_A 23 QAPDFTVLTNSLEEKSLADMKGKVTIISVIPSIDTGVCDAQTRRFNEEAAKL-GD-VNVYTISADLPFAQARWCGANGID 100 (167)
T ss_dssp CCCCCEEEBTTCCEEEHHHHTTSCEEEEECSCSTTSHHHHTHHHHHHHHHHH-SS-CEEEEEECSSGGGTSCCGGGSSCT
T ss_pred cCCceEEECCCCCEeeHHHhCCCeEEEEEecCCCCCchHHHHHHHHHHHHHc-CC-CEEEEEECCCHHHHHHHHHhcCCC
Confidence 478999999999988776555444433342221 12333333333322333 34 89999999865444 34566
Q ss_pred eEEEecC
Q 029886 85 AFRLIPE 91 (186)
Q Consensus 85 ~f~~vP~ 91 (186)
.|.++.+
T Consensus 101 ~~~~~~d 107 (167)
T 2jsy_A 101 KVETLSD 107 (167)
T ss_dssp TEEEEEG
T ss_pred CceEeeC
Confidence 7888776
No 27
>3bid_A UPF0339 protein NMB1088; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.70A {Neisseria meningitidis MC58} SCOP: d.348.1.1
Probab=42.26 E-value=55 Score=21.32 Aligned_cols=39 Identities=21% Similarity=0.256 Sum_probs=26.7
Q ss_pred CcEEEEEcCCCCeEEEEcCCCCceEEEeeeCHHHHHHHHHHHHhcCcc
Q 029886 13 VPVYALSNCNEEFVLVSGAKTGKSLGLMCFKKEDAEALLHQMKSMDPA 60 (186)
Q Consensus 13 VPVF~vtn~~g~p~l~~~~~~~~~~~lFf~~~~DA~~~L~~~k~~~p~ 60 (186)
=.-|-+..++|+.++ +++ .| -++.+|+.-++.+|++-|.
T Consensus 12 ~frfrLka~NGevI~-sSe-------~Y-~sk~~a~~gI~sVk~na~~ 50 (64)
T 3bid_A 12 EYRWRLKAANHEIIA-QGE-------GY-TSKQNCQHAVDLLKSTTAA 50 (64)
T ss_dssp CEEEEEECTTSCEEE-ECC-------CB-SCHHHHHHHHHHHHTCCTT
T ss_pred CEEEEEEeCCCCEEE-ECC-------Cc-CCHHHHHHHHHHHHHhCCC
Confidence 344555555555555 212 25 7999999999999998664
No 28
>3uma_A Hypothetical peroxiredoxin protein; nysgrc, PSI biology, structural genomics, NEW YORK structura genomics research consortium; 2.20A {Sinorhizobium meliloti}
Probab=41.77 E-value=8 Score=29.76 Aligned_cols=77 Identities=12% Similarity=0.095 Sum_probs=45.5
Q ss_pred CCcEEEEEcC--CC-CeEEEEc-CCCCceEEEee------eCHH-HHHHHHHHHHhcCcccccCCeE-EEEeeccchhhc
Q 029886 12 GVPVYALSNC--NE-EFVLVSG-AKTGKSLGLMC------FKKE-DAEALLHQMKSMDPAMRKEGSR-VVPVPLNKVFQL 79 (186)
Q Consensus 12 ~VPVF~vtn~--~g-~p~l~~~-~~~~~~~~lFf------~~~~-DA~~~L~~~k~~~p~~~~~~~k-V~~v~L~~vy~l 79 (186)
..|-|++.+. +| ..+-.+. -.++.++-+|| .+.. ++-.+.+.. .++...|+. |..|+.+....+
T Consensus 31 ~aPdf~l~~~~~~G~~~v~L~d~~~Gk~vvL~f~~a~wcp~C~~~e~p~l~~~~----~~~~~~gv~~vv~Is~d~~~~~ 106 (184)
T 3uma_A 31 KLPNATFKEKTADGPVEVTTELLFKGKRVVLFAVPGAFTPTCSLNHLPGYLENR----DAILARGVDDIAVVAVNDLHVM 106 (184)
T ss_dssp BCCCCEEEEEETTEEEEEEHHHHHTTSEEEEEEESCTTCHHHHHTHHHHHHHTH----HHHHTTTCCEEEEEESSCHHHH
T ss_pred CCCCcEeecccCCCceEEeHHHHhCCCCEEEEEEcCCCCCCcCHHHHHHHHHHH----HHHHHcCCCEEEEEECCCHHHH
Confidence 4789999987 78 7776665 34454555553 1333 344433322 233323588 999998876554
Q ss_pred ----cccCee--EEEecCH
Q 029886 80 ----KVNGVA--FRLIPES 92 (186)
Q Consensus 80 ----~~~~~~--f~~vP~~ 92 (186)
+..++. |.++.|.
T Consensus 107 ~~f~~~~~~~~~fp~l~D~ 125 (184)
T 3uma_A 107 GAWATHSGGMGKIHFLSDW 125 (184)
T ss_dssp HHHHHHHTCTTTSEEEECT
T ss_pred HHHHHHhCCCCceEEEEcC
Confidence 334554 7777665
No 29
>3kij_A Probable glutathione peroxidase 8; human PDI-peroxidase, membrane, oxidoreductase, transmembrane; 1.80A {Homo sapiens} SCOP: c.47.1.0 PDB: 3cyn_A
Probab=39.07 E-value=34 Score=25.19 Aligned_cols=59 Identities=12% Similarity=0.073 Sum_probs=36.2
Q ss_pred CCcEEEEEcCCCCeEEEEcCCCCceEEEeee------CHHHHHHHHHHHHhcCcccccCCeEEEEeeccc
Q 029886 12 GVPVYALSNCNEEFVLVSGAKTGKSLGLMCF------KKEDAEALLHQMKSMDPAMRKEGSRVVPVPLNK 75 (186)
Q Consensus 12 ~VPVF~vtn~~g~p~l~~~~~~~~~~~lFf~------~~~DA~~~L~~~k~~~p~~~~~~~kV~~v~L~~ 75 (186)
.+|=|.++|.+|..+-.+.-.| +++-++|. ++.+.. .|+++.++.. ..|+.|..|+.+.
T Consensus 17 ~~p~f~l~d~~G~~v~l~~~~G-k~vlv~F~atwC~~C~~~~p-~l~~l~~~~~---~~~~~vi~is~d~ 81 (180)
T 3kij_A 17 SFYAFEVKDAKGRTVSLEKYKG-KVSLVVNVASDCQLTDRNYL-GLKELHKEFG---PSHFSVLAFPCNQ 81 (180)
T ss_dssp CGGGCEEEBTTSCEEEGGGGTT-SEEEEEEECSSSTTHHHHHH-HHHHHHHHHT---TTSEEEEEEECCC
T ss_pred cccceEEecCCCCEecHHHcCC-CEEEEEEEecCCCCcHHHHH-HHHHHHHHhc---cCCeEEEEEECCc
Confidence 5789999999999988776554 45545433 344333 3344433322 2248888887653
No 30
>3g74_A Protein of unknown function; APC21008.1, structural GE PSI-2, protein structure initiative, midwest center for STR genomics; 2.43A {Eubacterium ventriosum atcc 27560}
Probab=38.12 E-value=15 Score=26.21 Aligned_cols=49 Identities=10% Similarity=0.112 Sum_probs=31.5
Q ss_pred CHHHHHHhcCCCcEEEEEcCCCCeEEEEcCCCCceEEEeeeCHHHHHHHHHHHHhcCcccccCCeEEEEee
Q 029886 2 SAEAIEERLAGVPVYALSNCNEEFVLVSGAKTGKSLGLMCFKKEDAEALLHQMKSMDPAMRKEGSRVVPVP 72 (186)
Q Consensus 2 ~~~~I~ekL~~VPVF~vtn~~g~p~l~~~~~~~~~~~lFf~~~~DA~~~L~~~k~~~p~~~~~~~kV~~v~ 72 (186)
+..++.++|...|+|.++..++.-++++ +-..++.+++..|+ +.|+.++
T Consensus 34 ~d~~~~~klk~l~i~~~~~~d~~r~Vis-----------------vm~II~~I~~~~P~-----l~I~~iG 82 (100)
T 3g74_A 34 KNKNITNRLKSMKLLEDTTKGKKRYIVS-----------------IMKIIEMADQTFQN-----VDIQNIG 82 (100)
T ss_dssp SSHHHHHHHHTCEEEECC----CEEEEE-----------------HHHHHHHHHHHCSS-----EEEEECS
T ss_pred CCHHHHHHhhCcEeeEcCCCCCCEEEEE-----------------HHHHHHHHHHHCCC-----ceEEEcC
Confidence 4578999999999999987666555444 34566667777775 4555544
No 31
>1xvq_A Thiol peroxidase; thioredoxin fold, structural genomics, PSI, protein structur initiative, TB structural genomics consortium, TBSGC; 1.75A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1y25_A
Probab=37.22 E-value=55 Score=23.95 Aligned_cols=75 Identities=9% Similarity=0.060 Sum_probs=44.4
Q ss_pred CCcEEEEEcCCCCeEEEEcCCCCceEEEeee------CHHHHHHHHHHHHhcCcccccCCeEEEEeeccchhhc----cc
Q 029886 12 GVPVYALSNCNEEFVLVSGAKTGKSLGLMCF------KKEDAEALLHQMKSMDPAMRKEGSRVVPVPLNKVFQL----KV 81 (186)
Q Consensus 12 ~VPVF~vtn~~g~p~l~~~~~~~~~~~lFf~------~~~DA~~~L~~~k~~~p~~~~~~~kV~~v~L~~vy~l----~~ 81 (186)
..|-|.++|.+|..+-.+.-.+..++=.||. ++..+.. |+++..+ .+ ++|..|+.+....+ +.
T Consensus 23 ~~P~f~l~~~~G~~v~l~~~~gk~vvl~F~~t~~C~~C~~~~~~-l~~l~~~-----~~-v~vv~Is~D~~~~~~~~~~~ 95 (175)
T 1xvq_A 23 PAPAFTLTGGDLGVISSDQFRGKSVLLNIFPSVDTPVCATSVRT-FDERAAA-----SG-ATVLCVSKDLPFAQKRFCGA 95 (175)
T ss_dssp BCCCCEEECTTSCEEEGGGGTTSCEEEEECSCCCSSCCCHHHHH-HHHHHHH-----TT-CEEEEEESSCHHHHTTCC--
T ss_pred cCCCeEEECCCCCEEeHHHcCCCEEEEEEEeCCCCchHHHHHHH-HHHHHhh-----cC-CEEEEEECCCHHHHHHHHHH
Confidence 4788999999999888776554433333321 2344433 3333333 23 89999999866554 34
Q ss_pred cCe-eEEEecCHH
Q 029886 82 NGV-AFRLIPEST 93 (186)
Q Consensus 82 ~~~-~f~~vP~~~ 93 (186)
.++ .|.++.|..
T Consensus 96 ~~~~~~~~l~D~~ 108 (175)
T 1xvq_A 96 EGTENVMPASAFR 108 (175)
T ss_dssp ----CEEEEECTT
T ss_pred cCCCCceEeeCCH
Confidence 466 688888754
No 32
>1yj7_A ESCJ; mixed alpha/beta, extended linker, protein transport; 1.80A {Escherichia coli}
Probab=36.16 E-value=79 Score=24.34 Aligned_cols=61 Identities=16% Similarity=0.273 Sum_probs=39.7
Q ss_pred eeCHHHHHHHHHHHHhcCcccccCCeEEEEeeccchhhccccCeeEEEecCHHHHHHHHHHHHHcCCCCCCCCCcc
Q 029886 41 CFKKEDAEALLHQMKSMDPAMRKEGSRVVPVPLNKVFQLKVNGVAFRLIPESTQVKNALREMEKAGFSDDAFAGVP 116 (186)
Q Consensus 41 f~~~~DA~~~L~~~k~~~p~~~~~~~kV~~v~L~~vy~l~~~~~~f~~vP~~~qv~~A~~l~~~~g~~~~~f~GVP 116 (186)
.++.+||.+.++.|..++ +.| -|++..++-.--+||.. ++..|+.++..+|....+..|.=
T Consensus 8 ~L~~~da~~i~~~L~~~g-------I~~-------~y~~~~~g~~~I~Vp~~-~~~~ar~~La~~GLP~~~~~g~e 68 (171)
T 1yj7_A 8 GLTEKEANQMQALLLSND-------VNV-------SKEMDKSGNMTLSVAAA-DFVRAITILNNNGFPKKKFADIE 68 (171)
T ss_dssp EECHHHHHHHHHHHHHTT-------CCC-------EEEECTTSCEEEEEEGG-GHHHHHHHHHHTTCSCCCCCCHH
T ss_pred CCCHHHHHHHHHHHHHcC-------CCC-------ceEECCCCCEEEEeCHH-HHHHHHHHHHHcCCCCCCCCCHH
Confidence 379999999999998764 111 02222222111267765 89999999999998665555554
No 33
>3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural genomics, PSI-2, protein structure initiative; 1.77A {Geobacter metallireducens gs-15}
Probab=35.23 E-value=86 Score=22.07 Aligned_cols=77 Identities=14% Similarity=0.188 Sum_probs=47.4
Q ss_pred CCcEEEEEcCCCCeEEEEcCCCCceEEEeeeCH-----HHHHHHHHHHHhcCcccccCCeEEEEeeccchhhc--cccCe
Q 029886 12 GVPVYALSNCNEEFVLVSGAKTGKSLGLMCFKK-----EDAEALLHQMKSMDPAMRKEGSRVVPVPLNKVFQL--KVNGV 84 (186)
Q Consensus 12 ~VPVF~vtn~~g~p~l~~~~~~~~~~~lFf~~~-----~DA~~~L~~~k~~~p~~~~~~~kV~~v~L~~vy~l--~~~~~ 84 (186)
..|-|.+++.+|..+-...-.+. .+-++|+.. ......|.++.++.++ .++.+..|+.+.-++- +..++
T Consensus 20 ~~p~f~l~~~~g~~~~l~~~~gk-~vll~F~~~~C~~C~~~~~~l~~~~~~~~~---~~~~~v~v~~d~~~~~~~~~~~~ 95 (158)
T 3hdc_A 20 LAPNFKLPTLSGENKSLAQYRGK-IVLVNFWASWCPYCRDEMPSMDRLVKSFPK---GDLVVLAVNVEKRFPEKYRRAPV 95 (158)
T ss_dssp BCCCCEEECTTSCEEESGGGTTS-EEEEEEECTTCHHHHHHHHHHHHHHHHSST---TSEEEEEEECSSSCCGGGGGCCC
T ss_pred cCCCceeEcCCCCEEehHHhCCC-EEEEEEECCcCHHHHHHHHHHHHHHHHccc---CCeEEEEEeCCHHHHHHHHHcCC
Confidence 47899999999999887765544 444443421 1222344445444442 2489999998874332 44566
Q ss_pred eEEEecCH
Q 029886 85 AFRLIPES 92 (186)
Q Consensus 85 ~f~~vP~~ 92 (186)
.|.++.+.
T Consensus 96 ~~~~~~d~ 103 (158)
T 3hdc_A 96 SFNFLSDA 103 (158)
T ss_dssp SCEEEECT
T ss_pred CceEEECc
Confidence 77777665
No 34
>3ph9_A Anterior gradient protein 3 homolog; thioredoxin fold, protein disulfide isomerase, endoplasmic R isomerase; 1.83A {Homo sapiens} SCOP: c.47.1.0 PDB: 2lns_A 2lnt_A
Probab=32.20 E-value=11 Score=28.31 Aligned_cols=45 Identities=18% Similarity=0.129 Sum_probs=29.9
Q ss_pred CCCcEEEEEcCCCCeEEEE-cCCCCceEEEeeeCHHHHHHHHHHHHhcC
Q 029886 11 AGVPVYALSNCNEEFVLVS-GAKTGKSLGLMCFKKEDAEALLHQMKSMD 58 (186)
Q Consensus 11 ~~VPVF~vtn~~g~p~l~~-~~~~~~~~~lFf~~~~DA~~~L~~~k~~~ 58 (186)
.++|.|++-+++|..+-.. +..+ -..|.+.++++..+|+.|++.-
T Consensus 99 ~~~PT~~f~~~~G~~v~~~~G~~~---~~~~~~~~~~~~~ll~~~~~al 144 (151)
T 3ph9_A 99 QYVPRIMFVDPSLTVRADIAGRYS---NRLYTYEPRDLPLLIENMKKAL 144 (151)
T ss_dssp CCSSEEEEECTTSCBCTTCCCSCT---TSTTCCCGGGHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCEEEEEeCCcC---CcccccchhhHHHHHHHHHHHH
Confidence 5799999998888855421 1111 1123357899999999998753
No 35
>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls}
Probab=32.14 E-value=49 Score=22.98 Aligned_cols=75 Identities=20% Similarity=0.213 Sum_probs=41.7
Q ss_pred CCcEEEEEcCCCCeEEEEcCCCCceEEEeeeC------HHHHHHHHHHHHhcCcccccCCeEEEEeeccchhhc-----c
Q 029886 12 GVPVYALSNCNEEFVLVSGAKTGKSLGLMCFK------KEDAEALLHQMKSMDPAMRKEGSRVVPVPLNKVFQL-----K 80 (186)
Q Consensus 12 ~VPVF~vtn~~g~p~l~~~~~~~~~~~lFf~~------~~DA~~~L~~~k~~~p~~~~~~~kV~~v~L~~vy~l-----~ 80 (186)
.+|-|.+++ +|..+-.....+. .+-++|+. +. ....|.++.+..++ .|++|..|+++.--+. .
T Consensus 8 ~~P~f~l~~-~g~~~~l~~~~gk-~vll~f~~~~C~~C~~-~~~~l~~l~~~~~~---~~~~~v~v~~d~~~~~~~~~~~ 81 (152)
T 3gl3_A 8 KAPDFALPG-KTGVVKLSDKTGS-VVYLDFWASWCGPCRQ-SFPWMNQMQAKYKA---KGFQVVAVNLDAKTGDAMKFLA 81 (152)
T ss_dssp BCCCCEEEB-SSSEEEGGGGTTS-EEEEEEECTTCTHHHH-HHHHHHHHHHHHGG---GTEEEEEEECCSSHHHHHHHHH
T ss_pred cCCceEeeC-CCCeEeHHHhCCC-EEEEEEECCcCHHHHH-HHHHHHHHHHHhhc---CCeEEEEEECCCCHHHHHHHHH
Confidence 479999999 9988776655544 44444342 22 22234444443333 2488988887743211 3
Q ss_pred ccCeeEEEecCH
Q 029886 81 VNGVAFRLIPES 92 (186)
Q Consensus 81 ~~~~~f~~vP~~ 92 (186)
..++.|.++.+.
T Consensus 82 ~~~~~~~~~~d~ 93 (152)
T 3gl3_A 82 QVPAEFTVAFDP 93 (152)
T ss_dssp HSCCCSEEEECT
T ss_pred HcCCCCceeECC
Confidence 334555555543
No 36
>3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15}
Probab=32.06 E-value=94 Score=21.45 Aligned_cols=60 Identities=15% Similarity=0.215 Sum_probs=36.4
Q ss_pred CCcEEEEEcCCCCeEEEEcCCCCceEEEeeeCH-----HHHHHHHHHHHhcCcccccCCeEEEEeeccc
Q 029886 12 GVPVYALSNCNEEFVLVSGAKTGKSLGLMCFKK-----EDAEALLHQMKSMDPAMRKEGSRVVPVPLNK 75 (186)
Q Consensus 12 ~VPVF~vtn~~g~p~l~~~~~~~~~~~lFf~~~-----~DA~~~L~~~k~~~p~~~~~~~kV~~v~L~~ 75 (186)
.+|-|.++|.+|..+-...-.+. .+-++|+.. ......|.++.+..++ .|+.|..|+.+.
T Consensus 7 ~~p~~~l~~~~g~~~~l~~~~gk-~vll~f~~~~C~~C~~~~~~l~~~~~~~~~---~~~~~v~v~~d~ 71 (154)
T 3kcm_A 7 PAPDFTLNTLNGEVVKLSDLKGQ-VVIVNFWATWCPPCREEIPSMMRLNAAMAG---KPFRMLCVSIDE 71 (154)
T ss_dssp BCCCCEEECTTSCEEEGGGGTTS-EEEEEEECTTCHHHHHHHHHHHHHHHHTTT---SSEEEEEEECCT
T ss_pred CCCCeEEEcCCCCEEehhhcCCC-EEEEEEECCCCHHHHHHHHHHHHHHHHhcc---CCeEEEEEEcCC
Confidence 47889999999998887765544 444443421 1222344555444443 248888888775
No 37
>2k49_A UPF0339 protein SO_3888; solution structure, structural genomics, unknown functio protein structure initiative; NMR {Shewanella oneidensis} SCOP: d.348.1.1 d.348.1.1
Probab=31.75 E-value=1.5e+02 Score=21.55 Aligned_cols=64 Identities=11% Similarity=0.094 Sum_probs=44.1
Q ss_pred HHHhcCCCcEEEEE-cCCCCeEEEEcCCCCceEEE--eeeCHHHHHHHHHHHHhcCcccccCCeEEEEeecc
Q 029886 6 IEERLAGVPVYALS-NCNEEFVLVSGAKTGKSLGL--MCFKKEDAEALLHQMKSMDPAMRKEGSRVVPVPLN 74 (186)
Q Consensus 6 I~ekL~~VPVF~vt-n~~g~p~l~~~~~~~~~~~l--Ff~~~~DA~~~L~~~k~~~p~~~~~~~kV~~v~L~ 74 (186)
|.+--..-+.|-+. +.+|+++..--..++++||- .|-++..++.-++.+|+.-|. +.|.-++++
T Consensus 46 Vk~na~~~~~fe~~~~~~gk~yF~Lka~NgqvIg~Se~Y~s~~~~~~gI~sVk~na~~-----A~i~d~~~~ 112 (118)
T 2k49_A 46 VQTNSPIEARYAKEVAKNDKPYFNLKAANHQIIGTSQMYSSTAARDNGIKSVMENGKT-----TTIKDLTLE 112 (118)
T ss_dssp HHHHTTCGGGEEEEEETTTEEEEEEECTTCCEEEEBCCCSSHHHHHHHHHHHHHHTTC-----CCEEECTTT
T ss_pred HHHhCcccceEEEEEccCCCEEEEEEcCCCcEEEEcCCcCCHHHHHHHHHHHHHhCCC-----CeEEecccc
Confidence 33334456778774 88888877554545667664 237999999999999998774 556555443
No 38
>2p5q_A Glutathione peroxidase 5; thioredoxin fold, oxidoreductase; 2.00A {Populus trichocarpa x populusdeltoides} PDB: 2p5r_A
Probab=31.24 E-value=48 Score=23.50 Aligned_cols=58 Identities=17% Similarity=0.188 Sum_probs=33.8
Q ss_pred CCcEEEEEcCCCCeEEEEcCCCCceEEEeee------CHHHHHHHHHHHHhcCcccccCCeEEEEeecc
Q 029886 12 GVPVYALSNCNEEFVLVSGAKTGKSLGLMCF------KKEDAEALLHQMKSMDPAMRKEGSRVVPVPLN 74 (186)
Q Consensus 12 ~VPVF~vtn~~g~p~l~~~~~~~~~~~lFf~------~~~DA~~~L~~~k~~~p~~~~~~~kV~~v~L~ 74 (186)
..|=|.++|.+|..+-...-.+. ++-++|+ ++.... .|+++..+..+ .|++|..|+.+
T Consensus 11 ~~p~f~l~~~~g~~~~l~~~~gk-~vll~f~a~~C~~C~~~~~-~l~~l~~~~~~---~~~~vv~vs~d 74 (170)
T 2p5q_A 11 SVHDFTVKDAKENDVDLSIFKGK-VLLIVNVASKCGMTNSNYA-EMNQLYEKYKD---QGLEILAFPCN 74 (170)
T ss_dssp CGGGCEEEBTTSCEEEGGGGTTS-EEEEEEECSSSTTHHHHHH-HHHHHHHHHGG---GTEEEEEEECC
T ss_pred cccceEEEcCCCCEecHHHhCCC-EEEEEEEeccCCccHHHHH-HHHHHHHHhcc---CCEEEEEEECC
Confidence 47889999999998877765544 4334333 233222 23333332222 24888888875
No 39
>2v1m_A Glutathione peroxidase; selenium, selenocysteine, oxidoreductase, lipid peroxidase, schistosoma detoxification pathway; 1.00A {Schistosoma mansoni} PDB: 2wgr_A
Probab=31.14 E-value=47 Score=23.51 Aligned_cols=59 Identities=14% Similarity=0.204 Sum_probs=35.0
Q ss_pred CCcEEEEEcCCCCeEEEEcCCCCceEEEeee------CHHHHHHHHHHHHhcCcccccCCeEEEEeeccc
Q 029886 12 GVPVYALSNCNEEFVLVSGAKTGKSLGLMCF------KKEDAEALLHQMKSMDPAMRKEGSRVVPVPLNK 75 (186)
Q Consensus 12 ~VPVF~vtn~~g~p~l~~~~~~~~~~~lFf~------~~~DA~~~L~~~k~~~p~~~~~~~kV~~v~L~~ 75 (186)
.+|=|.+++.+|..+-.+.-.| +++-++|+ ++.... .|+++.++..+ .|++|..|+.+.
T Consensus 10 ~~p~f~l~~~~G~~~~l~~~~g-k~vlv~f~a~~C~~C~~~~~-~l~~l~~~~~~---~~~~vv~v~~d~ 74 (169)
T 2v1m_A 10 SIYEFTVKDINGVDVSLEKYRG-HVCLIVNVACKCGATDKNYR-QLQEMHTRLVG---KGLRILAFPCNQ 74 (169)
T ss_dssp SGGGCEEEBTTSCEEEGGGGTT-SEEEEEEECSSSTTHHHHHH-HHHHHHHHHGG---GTEEEEEEECCC
T ss_pred ccccceeecCCCCCccHHHcCC-CEEEEEEeeccCCchHHHHH-HHHHHHHHhhc---CCeEEEEEECCc
Confidence 5889999999999888776554 44444333 233322 23333333222 248898888753
No 40
>3keb_A Probable thiol peroxidase; structural genomics, APC40679, PSI-2, Pro structure initiative; HET: MSE; 1.80A {Chromobacterium violaceum}
Probab=30.77 E-value=41 Score=27.00 Aligned_cols=81 Identities=7% Similarity=0.130 Sum_probs=52.6
Q ss_pred CCcEEEEEcCCCCeEEEEcCCCCceEEEeee------CH-----HHHHHHHHHHHhcCcccccCCeEEEEeeccchhhc-
Q 029886 12 GVPVYALSNCNEEFVLVSGAKTGKSLGLMCF------KK-----EDAEALLHQMKSMDPAMRKEGSRVVPVPLNKVFQL- 79 (186)
Q Consensus 12 ~VPVF~vtn~~g~p~l~~~~~~~~~~~lFf~------~~-----~DA~~~L~~~k~~~p~~~~~~~kV~~v~L~~vy~l- 79 (186)
..|-|++.|.+|..+-.+.-.+..++=+||- +. .++. .+.+. + . |+.|..|+.+....+
T Consensus 27 ~APdFtL~d~~G~~vsLsd~~Gk~vVL~F~ps~~cp~C~~~~~~~El~----~~~~~---~-~-gv~VvgIS~Ds~~~~~ 97 (224)
T 3keb_A 27 YLPSFMLVDDQKHDAALESFSHTPKLIVTLLSVDEDEHAGLLLLRETR----RFLDS---W-P-HLKLIVITVDSPSSLA 97 (224)
T ss_dssp BCCCCEEEETTSCEEEGGGGTTCCEEEEECSCTTCSTTTSHHHHHHHH----HHHTT---C-T-TSEEEEEESSCHHHHH
T ss_pred CCCCeEEECCCCCEEeHHHhCCCcEEEEEEeCCCCCCCCCCccHHHHH----HHHHH---c-C-CCEEEEEECCCHHHHH
Confidence 4799999999999988776555544444421 22 3333 33332 2 3 499999999988776
Q ss_pred ---cccCe-eEEEecCH--HHHHHHHHH
Q 029886 80 ---KVNGV-AFRLIPES--TQVKNALRE 101 (186)
Q Consensus 80 ---~~~~~-~f~~vP~~--~qv~~A~~l 101 (186)
+..++ .|.++.|. .++..+..+
T Consensus 98 ~f~~~~gl~~fplLsD~~~~~vak~yGv 125 (224)
T 3keb_A 98 RARHEHGLPNIALLSTLRGRDFHKRYGV 125 (224)
T ss_dssp HHHHHHCCTTCEEEESTTCTTHHHHTTC
T ss_pred HHHHHcCCCCceEEEcCCchHHHHHhCC
Confidence 44577 69999996 355544443
No 41
>4gqc_A Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, fully folded, locally unfolded, peroxide, DTT, structural genomics, riken; 2.00A {Aeropyrum pernix} PDB: 2cx3_A 2cx4_A 4gqf_A
Probab=30.73 E-value=5.1 Score=29.92 Aligned_cols=77 Identities=18% Similarity=0.319 Sum_probs=47.1
Q ss_pred CCcEEEEEcCCCCeEEEEcC--CCCceEEEeee-------CHHHHHHHHHHHHhcCcccccCCeEEEEeeccchhhc---
Q 029886 12 GVPVYALSNCNEEFVLVSGA--KTGKSLGLMCF-------KKEDAEALLHQMKSMDPAMRKEGSRVVPVPLNKVFQL--- 79 (186)
Q Consensus 12 ~VPVF~vtn~~g~p~l~~~~--~~~~~~~lFf~-------~~~DA~~~L~~~k~~~p~~~~~~~kV~~v~L~~vy~l--- 79 (186)
..|-|++.|.+|+.+-.+.- +|..++-+| + +..+ +..+.+...++.+.|+.|..|+.+....+
T Consensus 10 ~aPdF~l~~~~G~~v~Lsd~~~~Gk~vvl~f-~~~~~cp~C~~e----~~~l~~~~~~~~~~~v~vv~is~d~~~~~~~~ 84 (164)
T 4gqc_A 10 KAPDFTLPNQDFEPVNLYEVLKRGRPAVLIF-FPAAFSPVCTKE----LCTFRDKMAQLEKANAEVLAISVDSPWCLKKF 84 (164)
T ss_dssp BCCCCEEEBTTSCEEEHHHHHHTSSCEEEEE-CSCTTCCEECSS----CEESCCCGGGGGGSSSEEEEEESSCHHHHHHH
T ss_pred CCcCcEeECCCCCEEEHHHHhcCCCEEEEEE-eCCCCCCCcccc----hhhhhhhHHHhhccCceEEEecCCCHHHHHHH
Confidence 47999999999999887653 444444344 3 1111 12222223344444688988988876665
Q ss_pred -cccCeeEEEecCHH
Q 029886 80 -KVNGVAFRLIPEST 93 (186)
Q Consensus 80 -~~~~~~f~~vP~~~ 93 (186)
...++.|.++.|+.
T Consensus 85 ~~~~~~~fp~l~D~~ 99 (164)
T 4gqc_A 85 KDENRLAFNLLSDYN 99 (164)
T ss_dssp HHHTTCCSEEEECTT
T ss_pred HHhcCcccceeecCc
Confidence 44577787777753
No 42
>1tp9_A Peroxiredoxin, PRX D (type II); oligomer, thioredoxin fold, oxidoreductase; 1.62A {Populus trichocarpa} SCOP: c.47.1.10
Probab=30.48 E-value=40 Score=24.47 Aligned_cols=77 Identities=12% Similarity=0.188 Sum_probs=42.3
Q ss_pred CCcEEEEE--cCCC--CeEEEEc-CCCCceEEEeee------CH-HHHHHHHHHHHhcCcccccCCeE-EEEeeccchhh
Q 029886 12 GVPVYALS--NCNE--EFVLVSG-AKTGKSLGLMCF------KK-EDAEALLHQMKSMDPAMRKEGSR-VVPVPLNKVFQ 78 (186)
Q Consensus 12 ~VPVF~vt--n~~g--~p~l~~~-~~~~~~~~lFf~------~~-~DA~~~L~~~k~~~p~~~~~~~k-V~~v~L~~vy~ 78 (186)
..|=|+++ +.+| ..+-.+. -.+..++=+||- +. .++..+-+.. .++...|++ |..|+.+....
T Consensus 9 ~aP~f~l~~~~~~G~~~~~~l~~~~~gk~vvl~f~~~~~c~~C~~~e~~~l~~~~----~~~~~~~v~~vv~Is~d~~~~ 84 (162)
T 1tp9_A 9 VLPDGKLAYFDEQDQLQEVSVHSLVAGKKVILFGVPGAFTPTCSLKHVPGFIEKA----GELKSKGVTEILCISVNDPFV 84 (162)
T ss_dssp BCCCCEEEEECTTSCEEEEESHHHHTTSEEEEEEESCTTCHHHHHTHHHHHHHHH----HHHHHTTCCCEEEEESSCHHH
T ss_pred CCCCeEEEeecCCCCceeEeHHHHhCCCcEEEEEeCCCCCCCCCHHHHHHHHHHH----HHHHHCCCCEEEEEECCCHHH
Confidence 37888875 8888 7776665 454444444431 23 3444332222 223222488 99999876544
Q ss_pred c----cccCe--eEEEecCH
Q 029886 79 L----KVNGV--AFRLIPES 92 (186)
Q Consensus 79 l----~~~~~--~f~~vP~~ 92 (186)
+ +..++ .|.++.|.
T Consensus 85 ~~~~~~~~~~~~~~~~l~D~ 104 (162)
T 1tp9_A 85 MKAWAKSYPENKHVKFLADG 104 (162)
T ss_dssp HHHHHHTCTTCSSEEEEECT
T ss_pred HHHHHHhcCCCCCeEEEECC
Confidence 3 23344 56666664
No 43
>2ggt_A SCO1 protein homolog, mitochondrial; copper chaperone, Cu-binding protein, mitochondrial assembly factor, redox, nickel, disuplhide, mitochondrion; 2.40A {Homo sapiens} SCOP: c.47.1.10 PDB: 2gqk_A 2gql_A 2gqm_A 2gt5_A 2gt6_A 2gvp_A 2hrf_A 2hrn_A 1wp0_A
Probab=30.28 E-value=31 Score=24.45 Aligned_cols=77 Identities=9% Similarity=-0.085 Sum_probs=41.1
Q ss_pred CcEEEEEcCCCCeEEEEcCCCCceEEEeee-------CHHHHHHHHHHHHhcCccc-ccCCeEEEEeeccchh----hc-
Q 029886 13 VPVYALSNCNEEFVLVSGAKTGKSLGLMCF-------KKEDAEALLHQMKSMDPAM-RKEGSRVVPVPLNKVF----QL- 79 (186)
Q Consensus 13 VPVF~vtn~~g~p~l~~~~~~~~~~~lFf~-------~~~DA~~~L~~~k~~~p~~-~~~~~kV~~v~L~~vy----~l- 79 (186)
.|-|.++|.+|..+-.+.-.+. ++-++|+ ++.... .|+++.++..+. +..+++|..|+.+.-. .+
T Consensus 3 ap~f~l~~~~G~~~~l~~~~gk-~vll~f~~~~C~~~C~~~~~-~l~~l~~~~~~~~~~~~~~vv~vs~d~~~d~~~~~~ 80 (164)
T 2ggt_A 3 GGPFSLTTHTGERKTDKDYLGQ-WLLIYFGFTHCPDVCPEELE-KMIQVVDEIDSITTLPDLTPLFISIDPERDTKEAIA 80 (164)
T ss_dssp CCCCEEEETTSCEEEGGGGTTC-EEEEEEECTTCSSHHHHHHH-HHHHHHHHHHHSSSSCCEEEEEEESCTTTCCHHHHH
T ss_pred CCCeEEEeCCCCEEeHHHcCCC-EEEEEEEeCCCCchhHHHHH-HHHHHHHHHhhccCCCcEEEEEEEeCCCCCCHHHHH
Confidence 5889999999999887765544 4334322 333222 233333222110 0113889899887421 11
Q ss_pred ---cccCeeEEEecC
Q 029886 80 ---KVNGVAFRLIPE 91 (186)
Q Consensus 80 ---~~~~~~f~~vP~ 91 (186)
+..+..|.+++.
T Consensus 81 ~~~~~~~~~~~~l~~ 95 (164)
T 2ggt_A 81 NYVKEFSPKLVGLTG 95 (164)
T ss_dssp HHHHTTCSSCEEEEC
T ss_pred HHHHHcCCCeEEEeC
Confidence 334556666643
No 44
>3ztl_A Thioredoxin peroxidase; oxidoreductase, reductase, schistosomiasis, thioredoxin fold; 3.00A {Schistosoma mansoni} PDB: 3zvj_A 3zvj_D
Probab=30.19 E-value=26 Score=27.22 Aligned_cols=81 Identities=5% Similarity=0.076 Sum_probs=44.7
Q ss_pred CCcEEEEE---cCCCCeEEEEcCCCCceEEEeeeC---HHHHHHHHHHHHhcCcccccCCeEEEEeeccchhhc----c-
Q 029886 12 GVPVYALS---NCNEEFVLVSGAKTGKSLGLMCFK---KEDAEALLHQMKSMDPAMRKEGSRVVPVPLNKVFQL----K- 80 (186)
Q Consensus 12 ~VPVF~vt---n~~g~p~l~~~~~~~~~~~lFf~~---~~DA~~~L~~~k~~~p~~~~~~~kV~~v~L~~vy~l----~- 80 (186)
.+|-|.++ |.+|..+-.+.-.+..++=.| +. -.-....+..+.+...++...|+.|..|+.+..... +
T Consensus 45 ~aP~f~l~~~~d~~G~~v~l~~~~Gk~vll~F-~a~~wC~~C~~~~p~l~~l~~~~~~~~v~vv~Is~D~~~~~~~~~~~ 123 (222)
T 3ztl_A 45 PAPEFKGQAVINGEFKEICLKDYRGKYVVLFF-YPADFTFVCPTEIIAFSDQVEEFNSRNCQVIACSTDSQYSHLAWDNL 123 (222)
T ss_dssp ECCCCEEEEEETTEEEEEEGGGGTTSEEEEEE-CSCSSCSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHS
T ss_pred CCCCeEEecccCCCCcEEeHHHhCCCeEEEEE-ECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHH
Confidence 37889998 666788877765544343334 42 111222233333222333333599999999865433 1
Q ss_pred --c----cCeeEEEecCHH
Q 029886 81 --V----NGVAFRLIPEST 93 (186)
Q Consensus 81 --~----~~~~f~~vP~~~ 93 (186)
. .++.|.++.|..
T Consensus 124 ~~~~~~~~~~~~~~l~D~~ 142 (222)
T 3ztl_A 124 DRKSGGLGHMKIPLLADRK 142 (222)
T ss_dssp CGGGTSCCSCSSCEEECSS
T ss_pred hhhhccccccceeEEeCCc
Confidence 1 167777777643
No 45
>3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis}
Probab=30.07 E-value=65 Score=22.25 Aligned_cols=64 Identities=5% Similarity=-0.023 Sum_probs=35.6
Q ss_pred CCcEEEEEcCCCCeEEEEcCCCCceEEEeeeCH--HHHHHHHHHHHh---cCcccccCCeEEEEeeccch
Q 029886 12 GVPVYALSNCNEEFVLVSGAKTGKSLGLMCFKK--EDAEALLHQMKS---MDPAMRKEGSRVVPVPLNKV 76 (186)
Q Consensus 12 ~VPVF~vtn~~g~p~l~~~~~~~~~~~lFf~~~--~DA~~~L~~~k~---~~p~~~~~~~kV~~v~L~~v 76 (186)
..|-|.+++.+|..+-.+.-.+ +.+-++|+.. ..-...+..+++ -..++...|+.|..|+.+.-
T Consensus 10 ~ap~f~l~~~~g~~~~l~~~~g-k~vll~F~a~wC~~C~~~~~~l~~~~~l~~~~~~~~~~vi~i~~d~~ 78 (142)
T 3eur_A 10 KALNFTYTLDSGVKGTLYQFPA-EYTLLFINNPGCHACAEMIEGLKASPVINGFTAAKKLKVLSIYPDEE 78 (142)
T ss_dssp BCCCCEEEETTSCEEETTTCCC-SEEEEEECCSSSHHHHHHHHHHHHCHHHHHHHHTTSEEEEEEECSSC
T ss_pred ccCCcEEEcCCCCEeeHHHcCC-CEEEEEEECCCCccHHHHHHHHhhhHHHHHHhccCCeEEEEEEcCCC
Confidence 4789999999999987665554 5555543421 112333333322 11122112488888887754
No 46
>2v2g_A Peroxiredoxin 6; oxidoreductase, antioxidant enzymes; 1.60A {Arenicola marina} PDB: 2v32_A 2v41_A
Probab=29.59 E-value=27 Score=27.87 Aligned_cols=79 Identities=9% Similarity=0.145 Sum_probs=44.7
Q ss_pred CCcEEEEEcCCCCeEEEEcCCCC-ceEEEee---eCHHHHHHHHHHHHhcCcccccCCeEEEEeeccchhhc----c---
Q 029886 12 GVPVYALSNCNEEFVLVSGAKTG-KSLGLMC---FKKEDAEALLHQMKSMDPAMRKEGSRVVPVPLNKVFQL----K--- 80 (186)
Q Consensus 12 ~VPVF~vtn~~g~p~l~~~~~~~-~~~~lFf---~~~~DA~~~L~~~k~~~p~~~~~~~kV~~v~L~~vy~l----~--- 80 (186)
..|=|.+++.+| .+-.+.-.+. .++-+|| +++ -....+..+.+..+++.+.|++|..|+.+....+ +
T Consensus 8 ~aPdF~l~~~~G-~v~l~d~~Gk~~vvL~f~pa~~cp-vC~~el~~l~~l~~ef~~~~v~vigIS~D~~~~~~~~~~~i~ 85 (233)
T 2v2g_A 8 VFPNFEADSTIG-KLKFHDWLGNSWGVLFSHPRDFTP-VSTTELGRVIQLEGDFKKRGVKLIALSCDNVADHKEWSEDVK 85 (233)
T ss_dssp BCCCCEEEETTC-CEEHHHHHCSSEEEEEECSCSSCH-HHHHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHHHHH
T ss_pred CCCCcEEecCCC-CEEHHHHCCCCeEEEEEECCCCCC-CcHHHHHHHHHHHHHHHHcCCEEEEEcCCCHHHHHHHHHHHH
Confidence 478899999999 5544433344 3443332 122 1222233333333344333599999999977654 2
Q ss_pred ---cc--CeeEEEecCH
Q 029886 81 ---VN--GVAFRLIPES 92 (186)
Q Consensus 81 ---~~--~~~f~~vP~~ 92 (186)
.. ++.|.++.|.
T Consensus 86 ~~~~~~~~~~fpil~D~ 102 (233)
T 2v2g_A 86 CLSGVKGDMPYPIIADE 102 (233)
T ss_dssp HHHTCCSSCSSCEEECT
T ss_pred HhhCcccCCceEEEECC
Confidence 23 6778888774
No 47
>2a4v_A Peroxiredoxin DOT5; yeast nuclear thiol peroxidase, atypical 2-Cys peroxiredoxin, oxidoreductase; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10
Probab=29.32 E-value=20 Score=25.83 Aligned_cols=79 Identities=8% Similarity=0.193 Sum_probs=43.8
Q ss_pred CCcEEEEEcCCCCeEEEEcCCCC-ceEEEeee----CHHHHHHHHHHHHhcCcccccCCeEEEEeeccchhhc----ccc
Q 029886 12 GVPVYALSNCNEEFVLVSGAKTG-KSLGLMCF----KKEDAEALLHQMKSMDPAMRKEGSRVVPVPLNKVFQL----KVN 82 (186)
Q Consensus 12 ~VPVF~vtn~~g~p~l~~~~~~~-~~~~lFf~----~~~DA~~~L~~~k~~~p~~~~~~~kV~~v~L~~vy~l----~~~ 82 (186)
.+|=|.++|.+|..+-.+.-.+. +++-+||+ +. -....+..+.+...++...| .|..|+.+..-.+ +..
T Consensus 12 ~~P~f~l~~~~G~~v~l~~~~gk~~~vvl~f~~~~~c~-~C~~~~~~l~~~~~~~~~~~-~vv~is~d~~~~~~~~~~~~ 89 (159)
T 2a4v_A 12 PIPDLSLLNEDNDSISLKKITENNRVVVFFVYPRASTP-GSTRQASGFRDNYQELKEYA-AVFGLSADSVTSQKKFQSKQ 89 (159)
T ss_dssp BCCSCEEECTTSCEEEHHHHHHHCSEEEEEECSSSSSH-HHHHHHHHHHHHHHHHTTTC-EEEEEESCCHHHHHHHHHHH
T ss_pred CCCCeEEECCCCCEEeHHHHhCCCCeEEEEEcCCCCCC-CHHHHHHHHHHHHHHHHhCC-cEEEEeCCCHHHHHHHHHHh
Confidence 47889999999998876644332 23434433 22 12222333332223333346 8888888754433 334
Q ss_pred CeeEEEecCH
Q 029886 83 GVAFRLIPES 92 (186)
Q Consensus 83 ~~~f~~vP~~ 92 (186)
++.|.++-|.
T Consensus 90 ~~~~~~l~D~ 99 (159)
T 2a4v_A 90 NLPYHLLSDP 99 (159)
T ss_dssp TCSSEEEECT
T ss_pred CCCceEEECC
Confidence 5667776663
No 48
>2obi_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase (GPX4); human GPX4, selenoprotein, thioredoxin-fold, anti-oxidatve defense system; 1.55A {Homo sapiens}
Probab=28.88 E-value=53 Score=24.10 Aligned_cols=58 Identities=10% Similarity=0.113 Sum_probs=34.6
Q ss_pred CCcEEEEEcCCCCeEEEEcCCCCceEEEeee------CHHHHHHHHHHHHhcCcccccCCeEEEEeecc
Q 029886 12 GVPVYALSNCNEEFVLVSGAKTGKSLGLMCF------KKEDAEALLHQMKSMDPAMRKEGSRVVPVPLN 74 (186)
Q Consensus 12 ~VPVF~vtn~~g~p~l~~~~~~~~~~~lFf~------~~~DA~~~L~~~k~~~p~~~~~~~kV~~v~L~ 74 (186)
.+|-|.++|.+|..+-...-.+. ++-++|+ ++.... .|+++.++..+ .|+.|..|+.+
T Consensus 26 ~~p~f~l~~~~G~~~~l~~~~gk-~vll~F~atwC~~C~~~~~-~l~~l~~~~~~---~~v~vv~vs~d 89 (183)
T 2obi_A 26 SMHEFSAKDIDGHMVNLDKYRGF-VCIVTNVASQCGKTEVNYT-QLVDLHARYAE---CGLRILAFPCN 89 (183)
T ss_dssp SGGGCEEEBTTSCEEEGGGGTTS-EEEEEEECSSSTTHHHHHH-HHHHHHHHHGG---GTEEEEEEECC
T ss_pred cccceEEEcCCCCEeeHHHcCCC-EEEEEEeCCCCCCcHHHHH-HHHHHHHHHhc---CCeEEEEEECC
Confidence 58899999999999887765544 4334333 233332 33333333222 24888888865
No 49
>3me7_A Putative uncharacterized protein; electron transfer protein, electron transport, structural GE PSI-2, protein structure initiative; 1.50A {Aquifex aeolicus} PDB: 3me8_A
Probab=28.67 E-value=57 Score=23.84 Aligned_cols=61 Identities=11% Similarity=-0.019 Sum_probs=34.7
Q ss_pred CCc-EEEEEcCCCCeEEEEcCCCCceEEEeee------CHHHHHHHHHHHHhcCcccccCCeEEEEeecc
Q 029886 12 GVP-VYALSNCNEEFVLVSGAKTGKSLGLMCF------KKEDAEALLHQMKSMDPAMRKEGSRVVPVPLN 74 (186)
Q Consensus 12 ~VP-VF~vtn~~g~p~l~~~~~~~~~~~lFf~------~~~DA~~~L~~~k~~~p~~~~~~~kV~~v~L~ 74 (186)
.+| -|.++|.+|..+-.+.-.|..++=.|+. +..... .|+++.++..+.+.+ ++|..|+++
T Consensus 6 ~~P~~f~l~d~~G~~v~l~~~~Gk~vll~F~~t~C~~~C~~~~~-~l~~~~~~~~~~~~~-~~vv~is~d 73 (170)
T 3me7_A 6 YVPGDITLVDSYGNEFQLKNLKGKPIILSPIYTHCRAACPLITK-SLLKVIPKLGTPGKD-FWVITFTFD 73 (170)
T ss_dssp BCCTTCEEEETTCCEEEGGGGTTSCEEEEEECTTCCSHHHHHHH-HHHTTHHHHCCBTTT-BEEEEEECC
T ss_pred cCCCCeEEEcCCcCEEchHHhCCCEEEEEEECCCCCchhHHHHH-HHHHHHHHhhhcCCc-eEEEEEECC
Confidence 478 8999999999988776554433333322 122222 223322221121234 899999987
No 50
>1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double disulfide bridge, membrane protein; 1.60A {Bradyrhizobium japonicum} SCOP: c.47.1.10
Probab=28.66 E-value=1e+02 Score=22.35 Aligned_cols=63 Identities=10% Similarity=0.149 Sum_probs=34.6
Q ss_pred CCcEEEEEcCCCCeEEEEcCCCCceEEEeeeCH--HHHHHHHHHHHhcCcccccCCeEEEEeeccc
Q 029886 12 GVPVYALSNCNEEFVLVSGAKTGKSLGLMCFKK--EDAEALLHQMKSMDPAMRKEGSRVVPVPLNK 75 (186)
Q Consensus 12 ~VPVF~vtn~~g~p~l~~~~~~~~~~~lFf~~~--~DA~~~L~~~k~~~p~~~~~~~kV~~v~L~~ 75 (186)
..|-|.++|.+|..+-...-.+. .+-++|+.. ..-...+..+++-..++...|++|..|+.+.
T Consensus 39 ~~p~f~l~~~~G~~~~l~~~~gk-~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~d~ 103 (186)
T 1jfu_A 39 KLPDLAFEDADGKPKKLSDFRGK-TLLVNLWATWCVPCRKEMPALDELQGKLSGPNFEVVAINIDT 103 (186)
T ss_dssp BCCCCEEECTTSCEEEGGGGTTS-EEEEEEECTTCHHHHHHHHHHHHHHHHHCBTTEEEEEEECCC
T ss_pred cCCCcEeEcCCCCEeeHHHcCCC-EEEEEEEeCCCHhHHHHHHHHHHHHHHhccCCcEEEEEECCC
Confidence 37889999999998877765544 433433321 0122222222222222222248899998874
No 51
>2qkl_A DCP1 protein, SPBC3B9.21 protein; protein-protein complex, hydrolase; 2.33A {Schizosaccharomyces pombe} PDB: 2qkm_A*
Probab=28.26 E-value=71 Score=23.54 Aligned_cols=24 Identities=21% Similarity=0.419 Sum_probs=20.3
Q ss_pred CCceEEEeeeCHHHHHHHHHHHHh
Q 029886 33 TGKSLGLMCFKKEDAEALLHQMKS 56 (186)
Q Consensus 33 ~~~~~~lFf~~~~DA~~~L~~~k~ 56 (186)
++.+.|+.|++.+|.+...+-++.
T Consensus 100 ~~~i~GiWf~~~~d~~~i~~~l~~ 123 (127)
T 2qkl_A 100 NQHVVGLWMFDPNDMSRIFNIVKE 123 (127)
T ss_dssp TTEEEEEEESSTHHHHHHHHHHHH
T ss_pred CCcEEEEEEEchHHHHHHHHHHHH
Confidence 468999999999999998887754
No 52
>2gs3_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase; GSHPX-4,phospholipid hydroperoxide; 1.90A {Homo sapiens}
Probab=28.19 E-value=56 Score=24.11 Aligned_cols=59 Identities=10% Similarity=0.119 Sum_probs=34.9
Q ss_pred CCcEEEEEcCCCCeEEEEcCCCCceEEEeee------CHHHHHHHHHHHHhcCcccccCCeEEEEeeccc
Q 029886 12 GVPVYALSNCNEEFVLVSGAKTGKSLGLMCF------KKEDAEALLHQMKSMDPAMRKEGSRVVPVPLNK 75 (186)
Q Consensus 12 ~VPVF~vtn~~g~p~l~~~~~~~~~~~lFf~------~~~DA~~~L~~~k~~~p~~~~~~~kV~~v~L~~ 75 (186)
..|-|.++|.+|..+-.+.-.+. ++-++|+ ++.+.. .|+++.++..+ .|++|..|+.+.
T Consensus 28 ~~p~f~l~~~~G~~v~l~~~~Gk-~vlv~F~atwC~~C~~~~~-~l~~l~~~~~~---~~v~vv~is~d~ 92 (185)
T 2gs3_A 28 SMHEFSAKDIDGHMVNLDKYRGF-VCIVTNVASQGGKTEVNYT-QLVDLHARYAE---CGLRILAFPCNQ 92 (185)
T ss_dssp CGGGCEEEBTTSCEEEGGGGTTS-EEEEEEECSSSTTHHHHHH-HHHHHHHHHGG---GTEEEEEEECCT
T ss_pred CcCCceeEcCCCCEeeHHHcCCC-EEEEEEecCCCCchHHHHH-HHHHHHHHhhc---CCeEEEEEECcc
Confidence 57889999999998887765544 4434323 233332 23333332222 248888888764
No 53
>2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, nysgrc, PSI-biology; NMR {Bacteroides vulgatus}
Probab=28.04 E-value=41 Score=23.96 Aligned_cols=64 Identities=9% Similarity=0.023 Sum_probs=34.5
Q ss_pred CCcEEEEEcCCCCeEEEEcCCCCceEEEeeeCH--HHHHHHHHHHHhcCcccccCCeEEEEeeccch
Q 029886 12 GVPVYALSNCNEEFVLVSGAKTGKSLGLMCFKK--EDAEALLHQMKSMDPAMRKEGSRVVPVPLNKV 76 (186)
Q Consensus 12 ~VPVF~vtn~~g~p~l~~~~~~~~~~~lFf~~~--~DA~~~L~~~k~~~p~~~~~~~kV~~v~L~~v 76 (186)
..|-|.++|.+|..+-.+.-.+ +.+-++|+.. ..-...+..+++-..++...|+.|..|+.+..
T Consensus 14 ~~p~f~l~~~~G~~~~l~~~~g-k~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~vv~i~~d~~ 79 (152)
T 2lrt_A 14 SIIDIQLKDLKGNTRSLTDLKG-KVVLIDFTVYNNAMSAAHNLALRELYNKYASQGFEIYQISLDGD 79 (152)
T ss_dssp CSCCCCEEBTTSCEECTTTGGG-SEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEECSCC
T ss_pred CCCCeEEEcCCCCEEeHHHhCC-CEEEEEEEcCCChhhHHHHHHHHHHHHHhccCCeEEEEEEccCC
Confidence 5789999999999876655443 3444443321 11222222222222222222488999888754
No 54
>2p31_A CL683, glutathione peroxidase 7; thioredoxin fold, NPGPX, phospholipid hydroperoxidase, struc genomics, structural genomics consortium, SGC; 2.00A {Homo sapiens}
Probab=27.92 E-value=57 Score=23.96 Aligned_cols=58 Identities=12% Similarity=0.081 Sum_probs=34.6
Q ss_pred CCcEEEEEcCCCCeEEEEcCCCCceEEEeee------CHHHHHHHHHHHHhcCcccccCCeEEEEeecc
Q 029886 12 GVPVYALSNCNEEFVLVSGAKTGKSLGLMCF------KKEDAEALLHQMKSMDPAMRKEGSRVVPVPLN 74 (186)
Q Consensus 12 ~VPVF~vtn~~g~p~l~~~~~~~~~~~lFf~------~~~DA~~~L~~~k~~~p~~~~~~~kV~~v~L~ 74 (186)
.+|=|.+++.+|..+-.+.-.+. ++-++|+ ++.... .|+++.++..+ .|++|..|+.+
T Consensus 28 ~~p~f~l~~~~G~~~~l~~~~Gk-~vlv~F~atwC~~C~~~~p-~l~~l~~~~~~---~~v~vv~vs~d 91 (181)
T 2p31_A 28 DFYDFKAVNIRGKLVSLEKYRGS-VSLVVNVASECGFTDQHYR-ALQQLQRDLGP---HHFNVLAFPCN 91 (181)
T ss_dssp CGGGCEEEBTTSCEEEGGGGTTS-EEEEEEECSSSTTHHHHHH-HHHHHHHHHGG---GTEEEEEEECC
T ss_pred ccCceEeecCCCCEecHHHcCCC-EEEEEEeccCCCCcHHHHH-HHHHHHHHhhc---CCEEEEEEECc
Confidence 57899999999998877765544 4444333 333333 23343333222 24888888765
No 55
>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10
Probab=27.49 E-value=1.2e+02 Score=20.19 Aligned_cols=58 Identities=7% Similarity=0.051 Sum_probs=35.4
Q ss_pred CCcEEEEEcCCCCeEEEEcCCCCceEEEeeeCH-----HHHHHHHHHHHhcCcccccCCeEEEEeeccc
Q 029886 12 GVPVYALSNCNEEFVLVSGAKTGKSLGLMCFKK-----EDAEALLHQMKSMDPAMRKEGSRVVPVPLNK 75 (186)
Q Consensus 12 ~VPVF~vtn~~g~p~l~~~~~~~~~~~lFf~~~-----~DA~~~L~~~k~~~p~~~~~~~kV~~v~L~~ 75 (186)
..|-|.++|.+|..+-.....+..++=.| ++. ......++++.+..+ + +++..|+.+.
T Consensus 3 ~~p~~~l~~~~g~~~~l~~~~~k~~lv~f-~~~~C~~C~~~~~~l~~~~~~~~----~-~~~~~v~~~~ 65 (136)
T 1lu4_A 3 ERLQFTATTLSGAPFDGASLQGKPAVLWF-WTPWCPFCNAEAPSLSQVAAANP----A-VTFVGIATRA 65 (136)
T ss_dssp GGGCCEEEBTTSCEEEGGGGTTSCEEEEE-ECTTCHHHHHHHHHHHHHHHHCT----T-SEEEEEECSS
T ss_pred CCCCeEeecCCCCeecHHHhCCCEEEEEE-ECCcChhHHHHHHHHHHHHHHCC----C-cEEEEEEcCC
Confidence 47889999999998877765544444334 432 122334445544443 4 7888888653
No 56
>3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis}
Probab=26.94 E-value=91 Score=21.25 Aligned_cols=80 Identities=6% Similarity=-0.002 Sum_probs=41.5
Q ss_pred CCcEEEEEcCCCCeEEEEcCCCCceEEEeeeCH--HHHHHHHHHHHh---cCcccccCCeEEEEeeccchhhc-----cc
Q 029886 12 GVPVYALSNCNEEFVLVSGAKTGKSLGLMCFKK--EDAEALLHQMKS---MDPAMRKEGSRVVPVPLNKVFQL-----KV 81 (186)
Q Consensus 12 ~VPVF~vtn~~g~p~l~~~~~~~~~~~lFf~~~--~DA~~~L~~~k~---~~p~~~~~~~kV~~v~L~~vy~l-----~~ 81 (186)
..|-|.+++.+|..+-.+.-.+ +.+-++|+.. ..-.+.+..+++ -..++...|+.|..|+++.--+. +.
T Consensus 6 ~~p~f~l~~~~g~~~~l~~~~g-k~vll~F~a~~C~~C~~~~~~l~~~~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~ 84 (142)
T 3ewl_A 6 KAADFTYVTVHGDNSRMSRLKA-QYTMLFFYDPDCSNCRKFEKLFAEIPAFVEMVENGTLRVLAIYPDENREEWATKAVY 84 (142)
T ss_dssp BCCCCEEECTTCCEEEGGGCCC-SEEEEEECCSSCHHHHHHHHHHHTCHHHHHHHHHTSEEEEEEECSSCHHHHHHHHTT
T ss_pred cCCCCEEECCCCCEEEhhhcCC-CEEEEEEECCCCccHHHHHHHHHHhHHHHHHhccCCeEEEEEEecCCHHHHHHHHHH
Confidence 4789999999999987776554 4444443421 112333222211 11111112488888887732111 33
Q ss_pred cCeeEEEecCH
Q 029886 82 NGVAFRLIPES 92 (186)
Q Consensus 82 ~~~~f~~vP~~ 92 (186)
.++.|.++.+.
T Consensus 85 ~~~~~~~~~d~ 95 (142)
T 3ewl_A 85 MPQGWIVGWNK 95 (142)
T ss_dssp SCTTCEEEECT
T ss_pred cCCCcceeeCC
Confidence 45555555544
No 57
>3syx_A Sprouty-related, EVH1 domain-containing protein 1; WH1 domain, human sprouty-related, EVH1 domain-containing PR Q7Z699; 2.45A {Homo sapiens}
Probab=26.78 E-value=62 Score=24.14 Aligned_cols=28 Identities=21% Similarity=0.254 Sum_probs=22.2
Q ss_pred CceEEEeeeCHHHHHHHHHHHHhcCccc
Q 029886 34 GKSLGLMCFKKEDAEALLHQMKSMDPAM 61 (186)
Q Consensus 34 ~~~~~lFf~~~~DA~~~L~~~k~~~p~~ 61 (186)
.++.||-|-+++||.+|.+.|+..--.+
T Consensus 95 ~~~yGL~F~S~~dA~~F~~~~~~Al~~L 122 (130)
T 3syx_A 95 DKKFGLTFQSPADARAFDRGIRRAIEDI 122 (130)
T ss_dssp TEEEEEEESSHHHHHHHHHHHHHHHHGG
T ss_pred CeEeecccCCHHHHHHHHHHHHHHHHHH
Confidence 3679999899999999998887653333
No 58
>2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus}
Probab=26.50 E-value=62 Score=22.41 Aligned_cols=47 Identities=6% Similarity=0.229 Sum_probs=33.5
Q ss_pred HHHHhcC--CCcEEEEEcCCCCeEEEEcCCCCceEEEeeeCHHHHHHHHHHHHhcCcc
Q 029886 5 AIEERLA--GVPVYALSNCNEEFVLVSGAKTGKSLGLMCFKKEDAEALLHQMKSMDPA 60 (186)
Q Consensus 5 ~I~ekL~--~VPVF~vtn~~g~p~l~~~~~~~~~~~lFf~~~~DA~~~L~~~k~~~p~ 60 (186)
++.+++. ++|.+.+.|.+|..+-.. .| . .+.++..++|+++...+++
T Consensus 99 ~~~~~~~v~~~P~~~lid~~G~i~~~~-------~g-~-~~~~~l~~~l~~~~~~~~~ 147 (152)
T 2lja_A 99 TFMDAYLINGIPRFILLDRDGKIISAN-------MT-R-PSDPKTAEKFNELLGLEGH 147 (152)
T ss_dssp HHHHHTTCCSSCCEEEECTTSCEEESS-------CC-C-TTCHHHHHHHHHHHTCCSS
T ss_pred hHHHHcCcCCCCEEEEECCCCeEEEcc-------CC-C-CCHHHHHHHHHHHhccccc
Confidence 5566654 799999999888754432 22 2 4778899999999887664
No 59
>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A
Probab=25.91 E-value=1.1e+02 Score=21.19 Aligned_cols=59 Identities=14% Similarity=0.173 Sum_probs=33.6
Q ss_pred CCcEEEEEcCCCCeEEEEcCCCCceEEEeeeCH-----HHHHHHHHHHHhcCcccccCCeEEEEeecc
Q 029886 12 GVPVYALSNCNEEFVLVSGAKTGKSLGLMCFKK-----EDAEALLHQMKSMDPAMRKEGSRVVPVPLN 74 (186)
Q Consensus 12 ~VPVF~vtn~~g~p~l~~~~~~~~~~~lFf~~~-----~DA~~~L~~~k~~~p~~~~~~~kV~~v~L~ 74 (186)
..|-|.+++.+|..+-...-.+..++=.| +.. ......|.++.+..++ .|++|..|+.+
T Consensus 5 ~~p~~~l~~~~g~~~~l~~~~gk~vlv~F-~~~~C~~C~~~~~~l~~~~~~~~~---~~v~vv~v~~d 68 (151)
T 2f9s_A 5 DAPNFVLEDTNGKRIELSDLKGKGVFLNF-WGTWCEPCKKEFPYMANQYKHFKS---QGVEIVAVNVG 68 (151)
T ss_dssp ECCCCEEECTTCCEEEGGGGTTSEEEEEE-ECTTCHHHHHHHHHHHHHHHHHGG---GTEEEEEEEES
T ss_pred cCCcceeEcCCCCEEEHHHcCCCEEEEEE-ECCCCHHHHHHHHHHHHHHHHhcc---CCeEEEEEECC
Confidence 36889999999998877765544443333 421 1122233333333222 13888888775
No 60
>3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron}
Probab=25.70 E-value=26 Score=24.69 Aligned_cols=77 Identities=18% Similarity=0.203 Sum_probs=44.1
Q ss_pred CCcEEEEEcCCCCeEEEE--cCCCCceEEEeee--------CHHHHHHHHHHHHhcCcccccCCeEEEEeeccchhhc--
Q 029886 12 GVPVYALSNCNEEFVLVS--GAKTGKSLGLMCF--------KKEDAEALLHQMKSMDPAMRKEGSRVVPVPLNKVFQL-- 79 (186)
Q Consensus 12 ~VPVF~vtn~~g~p~l~~--~~~~~~~~~lFf~--------~~~DA~~~L~~~k~~~p~~~~~~~kV~~v~L~~vy~l-- 79 (186)
..|-|.+++.+|..+-.+ .-.+ +.+-++|+ ++... ..|.++.++.. ...|+.|..|+++.--+.
T Consensus 10 ~~p~f~l~~~~g~~~~l~~~~~~g-k~vll~F~a~~C~~v~C~~~~-~~l~~l~~~~~--~~~~~~~v~v~~d~~~~~~~ 85 (150)
T 3fw2_A 10 YAPFFSLPNAKGEKITRSSDAFKQ-KSLLINFWASWNDSISQKQSN-SELREIYKKYK--KNKYIGMLGISLDVDKQQWK 85 (150)
T ss_dssp BCCCCCEEBTTCCEECTTSTTTTT-SEEEEEEECTTCCCHHHHHHH-HHHHHHHHHHT--TCSSEEEEEEECCSCHHHHH
T ss_pred cCCccEeECCCCCEEecchhhhCC-CEEEEEEEeCCCCchHHHHHH-HHHHHHHHHhc--cCCCeEEEEEEcCCCHHHHH
Confidence 478899999999988776 5444 44444323 23333 23333333220 122489999988843211
Q ss_pred ---cccCeeEEEecCH
Q 029886 80 ---KVNGVAFRLIPES 92 (186)
Q Consensus 80 ---~~~~~~f~~vP~~ 92 (186)
+..++.|.++.+.
T Consensus 86 ~~~~~~~~~~~~~~d~ 101 (150)
T 3fw2_A 86 DAIKRDTLDWEQVCDF 101 (150)
T ss_dssp HHHHHTTCCSEEECCS
T ss_pred HHHHHhCCCceEEEcC
Confidence 4456667666664
No 61
>2c0d_A Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, thioredoxin dependant, mitochondrial, antioxidant, oxidoreductase, redox-active center; 1.78A {Plasmodium falciparum}
Probab=25.54 E-value=68 Score=25.00 Aligned_cols=77 Identities=10% Similarity=0.130 Sum_probs=45.7
Q ss_pred CCcEEEEEcC--CC--CeEEEEcC-CCCceEEEee------eCHHHHHHHHHHHHhcCcccccCCeEEEEeeccchhhc-
Q 029886 12 GVPVYALSNC--NE--EFVLVSGA-KTGKSLGLMC------FKKEDAEALLHQMKSMDPAMRKEGSRVVPVPLNKVFQL- 79 (186)
Q Consensus 12 ~VPVF~vtn~--~g--~p~l~~~~-~~~~~~~lFf------~~~~DA~~~L~~~k~~~p~~~~~~~kV~~v~L~~vy~l- 79 (186)
..|-|.+++. +| ..+-.+.- .+..++=.|| .++.+...+ +++. .++...|++|..|+.+....+
T Consensus 30 ~aP~F~l~~~~~~G~~~~v~L~d~~~Gk~vvl~F~patwCp~C~~e~p~l-~~l~---~~~~~~~v~vv~Is~D~~~~~~ 105 (221)
T 2c0d_A 30 KAYNFTAQGLNKNNEIINVDLSSFIGQKYCCLLFYPLNYTFVCPTEIIEF-NKHI---KDFENKNVELLGISVDSVYSHL 105 (221)
T ss_dssp BCCCCEEEEECTTSCEEEEEGGGGTTTCEEEEEECCCCTTTCCHHHHHHH-HHTH---HHHHHTTEEEEEEESSCHHHHH
T ss_pred CCCCeEEeccccCCCccEEeHHHHcCCCeEEEEEEcCCCCCchHHHHHHH-HHHH---HHHHHCCCEEEEEeCCCHHHHH
Confidence 4789999998 88 77766655 5444443443 245544433 2222 222222499999999875544
Q ss_pred ---ccc-------CeeEEEecCH
Q 029886 80 ---KVN-------GVAFRLIPES 92 (186)
Q Consensus 80 ---~~~-------~~~f~~vP~~ 92 (186)
+.. ++.|.++.|.
T Consensus 106 ~~~~~~~~~~g~~~~~fp~l~D~ 128 (221)
T 2c0d_A 106 AWKNMPIEKGGIGNVEFTLVSDI 128 (221)
T ss_dssp HHHHSCGGGTCCCSCSSEEEECT
T ss_pred HHHHHhhhhcCccCCceEEEECC
Confidence 222 5678888774
No 62
>2b7k_A SCO1 protein; metallochaperone, cytochrome C oxidase, metal binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10 PDB: 2b7j_A
Probab=25.45 E-value=86 Score=23.51 Aligned_cols=77 Identities=6% Similarity=-0.113 Sum_probs=41.8
Q ss_pred CcEEEEEcCCCCeEEEEcCCCCceEEEeee------CHHHHHHHHHHHHhcCc-ccccCCeEEEEeeccc----hhhc--
Q 029886 13 VPVYALSNCNEEFVLVSGAKTGKSLGLMCF------KKEDAEALLHQMKSMDP-AMRKEGSRVVPVPLNK----VFQL-- 79 (186)
Q Consensus 13 VPVF~vtn~~g~p~l~~~~~~~~~~~lFf~------~~~DA~~~L~~~k~~~p-~~~~~~~kV~~v~L~~----vy~l-- 79 (186)
.|-|.++|.+|..+-.+.-.|..++=.|+. ++..... |+++..... +.+.+ ++|..|+.+. .-.+
T Consensus 21 ~p~f~l~d~~G~~v~l~~~~Gk~vlv~F~at~C~~vC~~~~~~-l~~l~~~~~~~~~~~-v~vv~Is~D~~~d~~~~~~~ 98 (200)
T 2b7k_A 21 GGPFHLEDMYGNEFTEKNLLGKFSIIYFGFSNCPDICPDELDK-LGLWLNTLSSKYGIT-LQPLFITCDPARDSPAVLKE 98 (200)
T ss_dssp CCCCEEEETTSCEEEGGGGTTSCEEEEEECTTCCSHHHHHHHH-HHHHHHHHHHHHCCC-CEEEEEESCTTTCCHHHHHH
T ss_pred CCCEEEEcCCCCEEeHHHcCCCEEEEEEECCCCcchhHHHHHH-HHHHHHHHHHhhCCc-eEEEEEECCCCCCCHHHHHH
Confidence 388999999999988776554433333322 3333322 233221111 11223 8999999883 2222
Q ss_pred --cccCeeEEEecC
Q 029886 80 --KVNGVAFRLIPE 91 (186)
Q Consensus 80 --~~~~~~f~~vP~ 91 (186)
+..+..|.+++.
T Consensus 99 ~~~~~~~~~~~l~~ 112 (200)
T 2b7k_A 99 YLSDFHPSILGLTG 112 (200)
T ss_dssp HHTTSCTTCEEEEC
T ss_pred HHHHcCCCceEEeC
Confidence 334556677765
No 63
>1n8j_A AHPC, alkyl hydroperoxide reductase C22 protein; peroxiredoxin, decamer, antioxidant, peroxidase, AHPF, oxidoreductase; 2.17A {Salmonella typhimurium} SCOP: c.47.1.10 PDB: 1yep_A 1yf1_A 1yf0_A 1yex_A 3emp_A
Probab=25.24 E-value=30 Score=25.94 Aligned_cols=77 Identities=12% Similarity=0.104 Sum_probs=43.4
Q ss_pred CCcEEEEEcC-CC--CeEEEEcCCCCceEEEeee------CHHHHHHHHHHHHhcCcccccCCeEEEEeeccchhhc---
Q 029886 12 GVPVYALSNC-NE--EFVLVSGAKTGKSLGLMCF------KKEDAEALLHQMKSMDPAMRKEGSRVVPVPLNKVFQL--- 79 (186)
Q Consensus 12 ~VPVF~vtn~-~g--~p~l~~~~~~~~~~~lFf~------~~~DA~~~L~~~k~~~p~~~~~~~kV~~v~L~~vy~l--- 79 (186)
..|-|.+++. +| ..+-.+.-.|..++=+||- ++.+...+ +++ ..++...|++|..|+.+....+
T Consensus 6 ~aP~f~l~~~~~G~~~~v~l~~~~Gk~vvl~F~~~~~Cp~C~~e~~~l-~~~---~~~~~~~~v~vv~Is~d~~~~~~~~ 81 (186)
T 1n8j_A 6 KIKPFKNQAFKNGEFIEVTEKDTEGRWSVFFFYPADFTFVSPTELGDV-ADH---YEELQKLGVDVYSVSTDTHFTHKAW 81 (186)
T ss_dssp BCCCCEEEEEETTEEEEEEHHHHTTSEEEEEECSCTTCSHHHHHHHHH-HHH---HHHHHHTTEEEEEEESSCHHHHHHH
T ss_pred cCCCcEeecccCCcceEEEHHHHCCCeEEEEEECCCCCCccHHHHHHH-HHH---HHHHHHCCCEEEEEECCCHHHHHHH
Confidence 4788999988 48 6666655444433333321 23333332 222 2222222499999999865544
Q ss_pred -ccc----CeeEEEecCH
Q 029886 80 -KVN----GVAFRLIPES 92 (186)
Q Consensus 80 -~~~----~~~f~~vP~~ 92 (186)
+.. ++.|.++.|.
T Consensus 82 ~~~~~~~~~~~fp~l~D~ 99 (186)
T 1n8j_A 82 HSSSETIAKIKYAMIGDP 99 (186)
T ss_dssp HHHCTTGGGCCSEEEECT
T ss_pred HHHcCcccCCceeEEECC
Confidence 233 6778887774
No 64
>3u5r_E Uncharacterized protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, hypothetical protein; 2.05A {Sinorhizobium meliloti}
Probab=24.99 E-value=51 Score=25.27 Aligned_cols=62 Identities=11% Similarity=0.117 Sum_probs=35.1
Q ss_pred CCcEEEEEcCCCCeEEEEcCCCCceEEEeee---CHHHHHHHHHHHHhcCcccccCCeEEEEeecc
Q 029886 12 GVPVYALSNCNEEFVLVSGAKTGKSLGLMCF---KKEDAEALLHQMKSMDPAMRKEGSRVVPVPLN 74 (186)
Q Consensus 12 ~VPVF~vtn~~g~p~l~~~~~~~~~~~lFf~---~~~DA~~~L~~~k~~~p~~~~~~~kV~~v~L~ 74 (186)
.+|-|.+++.+|..+-.+.-.+..++-++|+ +. -....+..+.+-..++...|+.|..|+.+
T Consensus 37 ~aP~f~l~~~~G~~v~l~~~~gk~~vll~F~a~~C~-~C~~~~~~l~~l~~~~~~~~v~vv~Vs~d 101 (218)
T 3u5r_E 37 RAADFVLPDAGGNLFTLAEFKDSPALLVAFISNRCP-FVVLIREALAKFAGDYAGQGLAVVAINSN 101 (218)
T ss_dssp BCCCCCEECTTCCEECGGGGTTCSEEEEEECCSSCH-HHHTTHHHHHHHHHHHTTTTEEEEEEECS
T ss_pred cCCCcEeECCCCCEEeHHHhCCCCeEEEEEECCCCc-cHHHHHHHHHHHHHHHHhCCcEEEEEECC
Confidence 4788999999999887776555543444433 21 11222222222222222225899999984
No 65
>2i81_A 2-Cys peroxiredoxin; structural genomics consortium, SGC, oxidoreductase; 2.45A {Plasmodium vivax sai-1} PDB: 2h66_A
Probab=24.54 E-value=53 Score=25.29 Aligned_cols=76 Identities=9% Similarity=0.152 Sum_probs=44.3
Q ss_pred CCcEEEEEcC--CC--CeEEEEcC-CCCceEEEeee-------CHHHHHHHHHHHHhcCcccccCCeEEEEeeccchhhc
Q 029886 12 GVPVYALSNC--NE--EFVLVSGA-KTGKSLGLMCF-------KKEDAEALLHQMKSMDPAMRKEGSRVVPVPLNKVFQL 79 (186)
Q Consensus 12 ~VPVF~vtn~--~g--~p~l~~~~-~~~~~~~lFf~-------~~~DA~~~L~~~k~~~p~~~~~~~kV~~v~L~~vy~l 79 (186)
..|=|.+++. +| ..+-.+.- .+. .+-++|+ ++..... +.+...++...|++|..|+.+....+
T Consensus 26 ~aP~f~l~~~~~~G~~~~v~l~d~~~gk-~vvl~F~pa~~C~~C~~~~~~----l~~l~~~~~~~~v~vv~Is~D~~~~~ 100 (213)
T 2i81_A 26 EAPFFKAEAVFGDNSFGEVNLTQFIGKK-YVLLYFYPLDFTFVCPSEIIA----LDKALDAFHERNVELLGCSVDSKYTH 100 (213)
T ss_dssp BCCCCEEEEECTTSCEEEEEGGGGTTTC-EEEEEECSCTTSSHHHHHHHH----HHHTHHHHHHTTEEEEEEESSCHHHH
T ss_pred cCCCeEeeccccCCceeEEeHHHHcCCC-eEEEEEEcCCCCCCCHHHHHH----HHHHHHHHHHCCCEEEEEeCCCHHHH
Confidence 3788999988 78 66666554 444 4444434 2333332 22222233222499999999876544
Q ss_pred ----ccc-------CeeEEEecCH
Q 029886 80 ----KVN-------GVAFRLIPES 92 (186)
Q Consensus 80 ----~~~-------~~~f~~vP~~ 92 (186)
+.. ++.|.++-|.
T Consensus 101 ~~~~~~~~~~~g~~~~~fp~l~D~ 124 (213)
T 2i81_A 101 LAWKKTPLAKGGIGNIKHTLLSDI 124 (213)
T ss_dssp HHHHSSCGGGTCCCSCSSEEEECT
T ss_pred HHHHHHHHhhCCccCCCceEEECC
Confidence 222 5678888774
No 66
>1xzo_A BSSCO, hypothetical protein YPMQ; thioredoxin-like fold, structural genomics, montreal-kingsto bacterial structural genomics initiative, BSGI; 1.70A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1on4_A
Probab=24.50 E-value=58 Score=23.22 Aligned_cols=61 Identities=15% Similarity=0.155 Sum_probs=35.0
Q ss_pred CCcEEEEEcCCCCeEEEEcCCCCceEEEeee------CHHHHHHHHHHHHhcCcccccCCeEEEEeecc
Q 029886 12 GVPVYALSNCNEEFVLVSGAKTGKSLGLMCF------KKEDAEALLHQMKSMDPAMRKEGSRVVPVPLN 74 (186)
Q Consensus 12 ~VPVF~vtn~~g~p~l~~~~~~~~~~~lFf~------~~~DA~~~L~~~k~~~p~~~~~~~kV~~v~L~ 74 (186)
..|-|.++|.+|..+-.+.-.+..++=.|+. ++... ..|.++.+...+.+.. ++|..|+.+
T Consensus 12 ~~p~f~l~~~~G~~~~l~~~~gk~vll~f~~~~C~~~C~~~~-~~l~~l~~~~~~~~~~-~~vv~is~d 78 (174)
T 1xzo_A 12 EVEPFTFQNQDGKNVSLESLKGEVWLADFIFTNCETICPPMT-AHMTDLQKKLKAENID-VRIISFSVD 78 (174)
T ss_dssp ECCCCEEECTTSCEEETGGGTTCCEEEEEECSCCSSCCCSHH-HHHHHHHHHHHHTTCC-CEEEEEESC
T ss_pred ccCCcEEEcCCCCEEehhhcCCCEEEEEEEcCCCcchhHHHH-HHHHHHHHHhhhcCCc-EEEEEEEeC
Confidence 3788999999999988776554433333322 22222 2333333322222223 899999987
No 67
>1kng_A Thiol:disulfide interchange protein CYCY; thioredoxin fold, cytochrome C maturation, atomic resolution oxidoreductase; 1.14A {Bradyrhizobium japonicum} SCOP: c.47.1.10
Probab=24.19 E-value=1.8e+02 Score=19.95 Aligned_cols=59 Identities=14% Similarity=0.037 Sum_probs=32.5
Q ss_pred CCcEEEEEcCCC--------CeEEEEcCCCCceEEEeeeCH--HHHHHHHHHHHhcCcccccCCeEEEEeecc
Q 029886 12 GVPVYALSNCNE--------EFVLVSGAKTGKSLGLMCFKK--EDAEALLHQMKSMDPAMRKEGSRVVPVPLN 74 (186)
Q Consensus 12 ~VPVF~vtn~~g--------~p~l~~~~~~~~~~~lFf~~~--~DA~~~L~~~k~~~p~~~~~~~kV~~v~L~ 74 (186)
..|-|.+++.+| ..+-...-.+..++=.| ++. ..-..++..+++-..+ .. +.+..|+.+
T Consensus 13 ~~p~f~l~~~~g~~~~~~~~~~~~l~~~~gk~~ll~f-~~~~C~~C~~~~~~l~~l~~~--~~-v~~v~v~~~ 81 (156)
T 1kng_A 13 PAPQTALPPLEGLQADNVQVPGLDPAAFKGKVSLVNV-WASWCVPCHDEAPLLTELGKD--KR-FQLVGINYK 81 (156)
T ss_dssp BCCCCCBCCCTTCEETTEECCCBCGGGGTTSCEEEEE-ECTTCHHHHHHHHHHHHHTTC--TT-SEEEEEEES
T ss_pred CCCCceeeeccCcccccccCceechHHhCCCEEEEEE-EcccCHhHHHHHHHHHHHHhc--CC-eEEEEEECC
Confidence 478899999988 66665554444333333 432 1233444444332222 33 788888765
No 68
>2lyd_A Decapping protein 1; DCP1, XRN1, transcription-protein binding complex; NMR {Drosophila melanogaster}
Probab=23.00 E-value=97 Score=22.98 Aligned_cols=22 Identities=9% Similarity=0.318 Sum_probs=17.6
Q ss_pred CceEEEeeeCHHHHHHHHHHHH
Q 029886 34 GKSLGLMCFKKEDAEALLHQMK 55 (186)
Q Consensus 34 ~~~~~lFf~~~~DA~~~L~~~k 55 (186)
+.+.|+.|++.+|.+...+.++
T Consensus 107 ~~I~GiWf~~~~d~~~i~~~l~ 128 (134)
T 2lyd_A 107 SRIRGFWFYNSEECDRISGLVN 128 (134)
T ss_dssp GEEEEEEESSHHHHHHHHHHHH
T ss_pred CcEEEEEecChHHHHHHHHHHH
Confidence 5789999999999887666554
No 69
>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B}
Probab=22.67 E-value=71 Score=22.11 Aligned_cols=59 Identities=10% Similarity=0.062 Sum_probs=33.8
Q ss_pred CCcEEEEEcCCCCeEEEEcCCCCceEEEeeeCH-----HHHHHHHHHHHhcCcccccCCeEEEEeecc
Q 029886 12 GVPVYALSNCNEEFVLVSGAKTGKSLGLMCFKK-----EDAEALLHQMKSMDPAMRKEGSRVVPVPLN 74 (186)
Q Consensus 12 ~VPVF~vtn~~g~p~l~~~~~~~~~~~lFf~~~-----~DA~~~L~~~k~~~p~~~~~~~kV~~v~L~ 74 (186)
.+|-|.+++.+|..+-...-.+..++=.| +.. ......+.++.+..++ .|+.|..|+.+
T Consensus 7 ~~p~~~l~~~~g~~~~l~~~~gk~~lv~f-~~~~C~~C~~~~~~l~~l~~~~~~---~~~~vv~v~~~ 70 (153)
T 2l5o_A 7 TAPAFSLPDLHGKTVSNADLQGKVTLINF-WFPSCPGCVSEMPKIIKTANDYKN---KNFQVLAVAQP 70 (153)
T ss_dssp TCCSCEEECTTSCEEEHHHHTTCEEEEEE-ECTTCTTHHHHHHHHHHHHHHGGG---TTEEEEEEECT
T ss_pred CCCCcEeecCCCCCccHHHhCCCEEEEEE-ECCCCccHHHHHHHHHHHHHHhcc---CCeEEEEEecC
Confidence 47899999999998876655444333333 321 1122334444444332 24788877753
No 70
>2rli_A SCO2 protein homolog, mitochondrial; copper protein, thioredoxin fold, metal transport, structural genomics, spine2-complexes; NMR {Homo sapiens}
Probab=22.08 E-value=59 Score=23.08 Aligned_cols=59 Identities=10% Similarity=-0.063 Sum_probs=33.6
Q ss_pred cEEEEEcCCCCeEEEEcCCCCceEEEeee-------CHHHHHHHHHHHHhcCccc--ccCCeEEEEeeccc
Q 029886 14 PVYALSNCNEEFVLVSGAKTGKSLGLMCF-------KKEDAEALLHQMKSMDPAM--RKEGSRVVPVPLNK 75 (186)
Q Consensus 14 PVF~vtn~~g~p~l~~~~~~~~~~~lFf~-------~~~DA~~~L~~~k~~~p~~--~~~~~kV~~v~L~~ 75 (186)
|-|.++|.+|..+-.+.-.+. ++-++|+ ++.... .|+++.++..+. ..+ ++|..|+.+.
T Consensus 7 p~f~l~~~~G~~~~l~~~~gk-~vll~F~~~~C~~~C~~~~~-~l~~l~~~~~~~~~~~~-v~vv~is~d~ 74 (171)
T 2rli_A 7 GDFHLLDHRGRARCKADFRGQ-WVLMYFGFTHCPDICPDELE-KLVQVVRQLEAEPGLPP-VQPVFITVDP 74 (171)
T ss_dssp SCCEEEETTSCEEETTTTTTS-EEEEEEECTTCSSSHHHHHH-HHHHHHHHHHHSTTSCC-EEEEEEESCS
T ss_pred CCeEEEeCCCCEEeHHHhCCC-EEEEEEEcCCCCchhHHHHH-HHHHHHHHHhhccCCCc-eEEEEEEECC
Confidence 789999999998877755543 4334322 333332 233333322110 123 8999999873
No 71
>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A
Probab=21.35 E-value=1.8e+02 Score=19.07 Aligned_cols=57 Identities=9% Similarity=0.029 Sum_probs=34.6
Q ss_pred CCcEEEEEcCCCCeEEEEcCCCCceEEEeeeCH-----HHHHHHHHHHHhcCcccccCCeEEEEeecc
Q 029886 12 GVPVYALSNCNEEFVLVSGAKTGKSLGLMCFKK-----EDAEALLHQMKSMDPAMRKEGSRVVPVPLN 74 (186)
Q Consensus 12 ~VPVF~vtn~~g~p~l~~~~~~~~~~~lFf~~~-----~DA~~~L~~~k~~~p~~~~~~~kV~~v~L~ 74 (186)
..|-|.+++.+|..+-.....+..++=.| ++. ......++++.+..+ + +++..|+.+
T Consensus 4 ~~p~~~~~~~~g~~~~l~~~~~k~~ll~f-~~~~C~~C~~~~~~l~~~~~~~~----~-~~~~~v~~~ 65 (136)
T 1zzo_A 4 AQLQFSAKTLDGHDFHGESLLGKPAVLWF-WAPWCPTCQGEAPVVGQVAASHP----E-VTFVGVAGL 65 (136)
T ss_dssp GGGCCEEEBTTSCEEEGGGGTTSCEEEEE-ECTTCHHHHHHHHHHHHHHHHCT----T-SEEEEEECS
T ss_pred CCCCcccccCCCCEeeHHHhCCCeEEEEE-EcCCChhHHHHHHHHHHHHHHcC----C-eEEEEEeCC
Confidence 46889999999998887765544443333 422 122334445544433 4 788888865
No 72
>2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens}
Probab=20.48 E-value=2e+02 Score=19.16 Aligned_cols=46 Identities=15% Similarity=0.274 Sum_probs=30.4
Q ss_pred HHHHhc--CCCcEEEEEcCCCCeEEEEcCCCCceEEEeeeCHHHHHHHHHHHHhcCc
Q 029886 5 AIEERL--AGVPVYALSNCNEEFVLVSGAKTGKSLGLMCFKKEDAEALLHQMKSMDP 59 (186)
Q Consensus 5 ~I~ekL--~~VPVF~vtn~~g~p~l~~~~~~~~~~~lFf~~~~DA~~~L~~~k~~~p 59 (186)
++.+++ .++|.+.+-+.+|..+-.. .| + .+.++-.++|+++....+
T Consensus 73 ~~~~~~~v~~~Pt~~~~~~~G~~~~~~-------~G-~-~~~~~l~~~l~~~~~~~~ 120 (126)
T 2l57_A 73 DLAYKYDANIVPTTVFLDKEGNKFYVH-------QG-L-MRKNNIETILNSLGVKEG 120 (126)
T ss_dssp HHHHHTTCCSSSEEEEECTTCCEEEEE-------ES-C-CCHHHHHHHHHHHCCCCC
T ss_pred HHHHHcCCcceeEEEEECCCCCEEEEe-------cC-C-CCHHHHHHHHHHHhcccc
Confidence 455555 4689888888777754322 23 2 478888888888766544
No 73
>1prx_A HORF6; peroxiredoxin, hydrogen peroxide, redox regulation, cellular signaling, antioxidant; 2.00A {Homo sapiens} SCOP: c.47.1.10
Probab=20.14 E-value=49 Score=25.89 Aligned_cols=76 Identities=11% Similarity=0.175 Sum_probs=43.4
Q ss_pred CCcEEEEEcCCCCeEEEEcCCCC-ceEEEee---e---CHHHHHHHHHHHHhcCcccccCCeEEEEeeccchhhc----c
Q 029886 12 GVPVYALSNCNEEFVLVSGAKTG-KSLGLMC---F---KKEDAEALLHQMKSMDPAMRKEGSRVVPVPLNKVFQL----K 80 (186)
Q Consensus 12 ~VPVF~vtn~~g~p~l~~~~~~~-~~~~lFf---~---~~~DA~~~L~~~k~~~p~~~~~~~kV~~v~L~~vy~l----~ 80 (186)
..|=|.+++.+| .+-.+.-.+. .++-+|| + +..+..+ |+++ .+++.+.|++|..|+.+....+ +
T Consensus 10 ~aP~F~l~~~~G-~v~l~d~~Gk~~vvL~~~~a~~cp~C~~el~~-l~~l---~~~f~~~~v~vi~IS~D~~~~~~~~~~ 84 (224)
T 1prx_A 10 VAPNFEANTTVG-RIRFHDFLGDSWGILFSHPRDFTPVCTTELGR-AAKL---APEFAKRNVKLIALSIDSVEDHLAWSK 84 (224)
T ss_dssp BCCCCEEEETTE-EEEHHHHHTTSEEEEEEESCSSCHHHHHHHHH-HHHH---HHHHHTTTEEEEEEESSCHHHHHHHHH
T ss_pred CCCCcEEecCCC-CEEHHHHcCCCeEEEEEECCCCCCCcHHHHHH-HHHH---HHHHHHCCCEEEEEcCCCHHHHHHHHH
Confidence 478899999998 5544433333 2444442 1 2333332 2222 2333333599999999977654 2
Q ss_pred c----------cCeeEEEecCH
Q 029886 81 V----------NGVAFRLIPES 92 (186)
Q Consensus 81 ~----------~~~~f~~vP~~ 92 (186)
. .++.|.++.|.
T Consensus 85 ~i~~~~~~~~~~~~~fpil~D~ 106 (224)
T 1prx_A 85 DINAYNSEEPTEKLPFPIIDDR 106 (224)
T ss_dssp HHHHHTTSCCCSCCSSCEEECT
T ss_pred HHHHhhCcccccCcCcceeecC
Confidence 1 46777777774
Done!