Query 029887
Match_columns 186
No_of_seqs 112 out of 1118
Neff 9.7
Searched_HMMs 46136
Date Fri Mar 29 05:13:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029887.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029887hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02378 glutathione S-transfe 100.0 2.4E-38 5.3E-43 235.5 16.7 186 1-186 1-186 (213)
2 PLN02817 glutathione dehydroge 100.0 2.7E-35 5.8E-40 224.6 16.7 184 2-186 55-238 (265)
3 TIGR00862 O-ClC intracellular 100.0 1.9E-34 4E-39 215.8 15.8 184 2-186 2-207 (236)
4 PRK09481 sspA stringent starva 100.0 3E-32 6.6E-37 202.5 13.3 168 12-186 11-189 (211)
5 KOG0406 Glutathione S-transfer 100.0 1.2E-31 2.5E-36 196.7 13.5 172 14-186 12-198 (231)
6 KOG1422 Intracellular Cl- chan 100.0 4.8E-30 1E-34 182.7 14.6 185 1-185 2-191 (221)
7 TIGR01262 maiA maleylacetoacet 100.0 3.8E-29 8.2E-34 185.6 12.6 167 14-186 2-191 (210)
8 PLN02473 glutathione S-transfe 100.0 7.6E-29 1.7E-33 184.5 13.8 167 15-186 6-198 (214)
9 PLN02395 glutathione S-transfe 100.0 8.6E-29 1.9E-33 184.3 12.5 171 1-186 1-197 (215)
10 COG0625 Gst Glutathione S-tran 100.0 1.1E-28 2.5E-33 183.3 12.5 165 14-186 3-191 (211)
11 PRK15113 glutathione S-transfe 100.0 4.2E-28 9.2E-33 180.6 14.1 158 19-186 15-195 (214)
12 PRK13972 GSH-dependent disulfi 100.0 3.9E-28 8.4E-33 180.9 12.9 158 19-186 8-192 (215)
13 KOG0868 Glutathione S-transfer 100.0 4.6E-28 9.9E-33 168.3 12.0 167 11-183 5-191 (217)
14 PRK10542 glutathionine S-trans 100.0 4.3E-28 9.4E-33 178.8 11.5 159 20-186 8-184 (201)
15 PRK10357 putative glutathione 100.0 1.9E-27 4.1E-32 175.6 12.9 167 14-186 3-187 (202)
16 PTZ00057 glutathione s-transfe 99.9 2.4E-27 5.1E-32 175.5 11.0 160 17-186 10-186 (205)
17 PRK11752 putative S-transferas 99.9 1.1E-26 2.4E-31 177.9 12.7 164 19-186 51-245 (264)
18 PRK10387 glutaredoxin 2; Provi 99.9 2.4E-26 5.2E-31 170.5 10.7 161 14-186 3-200 (210)
19 TIGR02182 GRXB Glutaredoxin, G 99.9 5.6E-25 1.2E-29 163.2 12.5 160 14-186 2-199 (209)
20 KOG0867 Glutathione S-transfer 99.9 1.5E-24 3.2E-29 162.4 12.3 168 14-186 5-196 (226)
21 cd03061 GST_N_CLIC GST_N famil 99.9 1.2E-24 2.6E-29 139.0 9.0 85 2-87 5-89 (91)
22 KOG1695 Glutathione S-transfer 99.9 1E-22 2.2E-27 148.5 12.7 151 2-163 3-168 (206)
23 KOG4420 Uncharacterized conser 99.9 8.6E-22 1.9E-26 144.6 8.0 176 10-186 25-274 (325)
24 PF13417 GST_N_3: Glutathione 99.8 1.8E-20 3.9E-25 116.9 6.6 73 15-87 2-74 (75)
25 PLN02907 glutamate-tRNA ligase 99.8 1.4E-19 3E-24 153.9 12.6 150 1-186 1-153 (722)
26 cd03059 GST_N_SspA GST_N famil 99.8 9.8E-19 2.1E-23 108.4 7.9 71 14-84 3-73 (73)
27 cd03060 GST_N_Omega_like GST_N 99.8 1.3E-18 2.8E-23 107.3 7.2 67 14-80 3-70 (71)
28 cd03052 GST_N_GDAP1 GST_N fami 99.8 1.4E-18 3E-23 107.7 7.1 68 14-81 3-73 (73)
29 cd03058 GST_N_Tau GST_N family 99.8 2.3E-18 5E-23 107.1 7.7 71 14-84 3-74 (74)
30 cd03038 GST_N_etherase_LigE GS 99.8 4.1E-18 9E-23 108.5 7.8 80 3-85 1-84 (84)
31 PF13409 GST_N_2: Glutathione 99.7 5.7E-18 1.2E-22 104.1 7.5 65 19-83 1-70 (70)
32 cd03041 GST_N_2GST_N GST_N fam 99.7 6.3E-18 1.4E-22 105.9 7.3 71 14-84 4-77 (77)
33 cd03053 GST_N_Phi GST_N family 99.7 7.1E-18 1.5E-22 105.3 7.2 70 14-83 4-76 (76)
34 cd03045 GST_N_Delta_Epsilon GS 99.7 7.5E-18 1.6E-22 104.7 7.0 69 14-82 3-74 (74)
35 cd03050 GST_N_Theta GST_N fami 99.7 1.6E-17 3.5E-22 103.7 8.2 71 14-84 3-76 (76)
36 cd03044 GST_N_EF1Bgamma GST_N 99.7 1.5E-17 3.3E-22 103.6 7.4 70 13-82 2-74 (75)
37 cd03076 GST_N_Pi GST_N family, 99.7 1.1E-17 2.3E-22 103.8 5.2 66 18-83 8-73 (73)
38 cd03080 GST_N_Metaxin_like GST 99.7 4.9E-17 1.1E-21 101.3 8.1 74 3-85 2-75 (75)
39 cd03048 GST_N_Ure2p_like GST_N 99.7 3.9E-17 8.4E-22 103.3 7.7 66 20-85 9-80 (81)
40 cd03043 GST_N_1 GST_N family, 99.7 5.3E-17 1.1E-21 100.6 7.8 66 16-81 6-73 (73)
41 cd03055 GST_N_Omega GST_N fami 99.7 2.7E-17 5.8E-22 105.9 6.4 72 10-81 17-89 (89)
42 cd03046 GST_N_GTT1_like GST_N 99.7 7E-17 1.5E-21 100.8 7.9 65 21-85 9-76 (76)
43 cd03037 GST_N_GRX2 GST_N famil 99.7 5.9E-17 1.3E-21 99.9 7.2 68 14-82 3-71 (71)
44 cd03056 GST_N_4 GST_N family, 99.7 6E-17 1.3E-21 100.2 6.8 68 14-81 3-73 (73)
45 cd03039 GST_N_Sigma_like GST_N 99.7 3.3E-17 7.1E-22 101.3 5.2 67 16-82 5-72 (72)
46 cd03047 GST_N_2 GST_N family, 99.7 7.2E-17 1.6E-21 100.0 6.7 68 14-81 3-73 (73)
47 cd03049 GST_N_3 GST_N family, 99.7 7.2E-17 1.6E-21 100.0 6.7 68 14-81 3-73 (73)
48 cd03057 GST_N_Beta GST_N famil 99.7 1.2E-16 2.6E-21 100.0 7.7 64 22-85 10-77 (77)
49 KOG3029 Glutathione S-transfer 99.7 1.1E-16 2.4E-21 119.2 8.5 165 14-185 93-350 (370)
50 KOG4244 Failed axon connection 99.7 7.5E-17 1.6E-21 119.3 7.4 165 13-186 54-269 (281)
51 cd03051 GST_N_GTT2_like GST_N 99.7 8.7E-17 1.9E-21 99.7 6.3 68 14-81 3-74 (74)
52 PF02798 GST_N: Glutathione S- 99.7 8.8E-17 1.9E-21 100.4 6.1 63 20-82 9-76 (76)
53 cd03042 GST_N_Zeta GST_N famil 99.7 1.6E-16 3.5E-21 98.3 7.0 68 14-81 3-73 (73)
54 cd03075 GST_N_Mu GST_N family, 99.7 3.6E-16 7.7E-21 99.0 6.5 67 18-84 7-82 (82)
55 cd03054 GST_N_Metaxin GST_N fa 99.6 1E-15 2.3E-20 94.5 7.4 71 4-83 2-72 (72)
56 COG2999 GrxB Glutaredoxin 2 [P 99.6 8.4E-16 1.8E-20 107.3 7.2 160 13-184 2-198 (215)
57 cd03040 GST_N_mPGES2 GST_N fam 99.6 7.9E-16 1.7E-20 96.3 6.3 67 16-84 6-76 (77)
58 cd03077 GST_N_Alpha GST_N fami 99.6 1.2E-15 2.7E-20 95.9 7.0 67 16-85 6-77 (79)
59 cd00570 GST_N_family Glutathio 99.6 8.6E-15 1.9E-19 89.2 6.8 68 14-81 3-71 (71)
60 COG0435 ECM4 Predicted glutath 99.5 2.2E-14 4.7E-19 106.8 2.2 174 10-185 50-272 (324)
61 cd03079 GST_N_Metaxin2 GST_N f 99.4 5.3E-13 1.1E-17 82.1 7.1 62 16-83 13-74 (74)
62 cd03198 GST_C_CLIC GST_C famil 99.4 3.8E-13 8.2E-18 92.3 7.1 92 95-186 4-111 (134)
63 KOG2903 Predicted glutathione 99.4 1.2E-13 2.6E-18 102.0 4.2 176 10-185 36-273 (319)
64 cd03201 GST_C_DHAR GST_C famil 99.4 1.1E-12 2.3E-17 89.1 7.1 94 92-186 4-97 (121)
65 PF13410 GST_C_2: Glutathione 99.3 2.2E-12 4.8E-17 78.8 4.0 65 117-186 5-69 (69)
66 cd03184 GST_C_Omega GST_C fami 99.2 9.5E-11 2.1E-15 79.8 7.5 81 106-186 20-100 (124)
67 TIGR02190 GlrX-dom Glutaredoxi 99.2 1.2E-10 2.5E-15 73.1 6.4 64 18-81 16-79 (79)
68 cd03078 GST_N_Metaxin1_like GS 99.2 1.8E-10 3.8E-15 71.1 7.0 72 3-83 1-72 (73)
69 PF14497 GST_C_3: Glutathione 99.1 5.8E-11 1.3E-15 77.7 4.4 64 116-186 33-96 (99)
70 KOG3027 Mitochondrial outer me 99.1 4.9E-10 1.1E-14 80.5 9.2 159 18-186 32-244 (257)
71 PF00043 GST_C: Glutathione S- 99.1 1.3E-10 2.8E-15 75.2 5.1 63 118-186 28-90 (95)
72 cd03202 GST_C_etherase_LigE GS 99.0 1.2E-09 2.6E-14 74.5 5.6 65 116-186 56-120 (124)
73 cd03200 GST_C_JTV1 GST_C famil 99.0 9.9E-10 2.1E-14 71.5 5.0 90 77-186 1-92 (96)
74 cd03210 GST_C_Pi GST_C family, 99.0 1E-09 2.2E-14 74.9 4.8 64 118-186 35-99 (126)
75 cd03196 GST_C_5 GST_C family, 98.9 1.7E-09 3.7E-14 72.7 5.4 66 116-186 39-104 (115)
76 cd00299 GST_C_family Glutathio 98.9 2E-09 4.4E-14 69.7 5.4 65 117-186 35-99 (100)
77 cd03193 GST_C_Metaxin GST_C fa 98.9 6.9E-10 1.5E-14 71.0 3.0 67 118-186 19-86 (88)
78 cd03203 GST_C_Lambda GST_C fam 98.9 2.3E-09 5.1E-14 72.6 5.6 66 120-186 32-98 (120)
79 cd03182 GST_C_GTT2_like GST_C 98.9 2.1E-09 4.4E-14 72.2 5.2 62 118-186 49-110 (117)
80 cd03190 GST_C_ECM4_like GST_C 98.9 1.8E-09 3.9E-14 75.3 4.9 67 118-186 37-105 (142)
81 cd03208 GST_C_Alpha GST_C fami 98.9 2.6E-09 5.6E-14 74.1 5.3 60 122-186 43-102 (137)
82 cd03204 GST_C_GDAP1 GST_C fami 98.9 2.9E-09 6.4E-14 70.8 5.3 69 117-186 28-104 (111)
83 cd03186 GST_C_SspA GST_N famil 98.9 3.1E-09 6.7E-14 70.3 5.4 63 117-186 34-96 (107)
84 PRK10638 glutaredoxin 3; Provi 98.9 4.7E-09 1E-13 66.4 5.9 64 18-81 10-74 (83)
85 cd03189 GST_C_GTT1_like GST_C 98.9 3E-09 6.5E-14 71.7 5.0 60 119-186 55-114 (119)
86 cd03029 GRX_hybridPRX5 Glutare 98.9 7.5E-09 1.6E-13 63.6 6.3 65 17-81 8-72 (72)
87 cd03206 GST_C_7 GST_C family, 98.9 3.8E-09 8.3E-14 69.1 5.1 62 117-186 32-93 (100)
88 cd03187 GST_C_Phi GST_C family 98.9 2.3E-09 4.9E-14 72.1 4.1 63 118-186 45-107 (118)
89 cd03191 GST_C_Zeta GST_C famil 98.9 4.7E-09 1E-13 71.0 5.6 61 120-186 46-106 (121)
90 cd03180 GST_C_2 GST_C family, 98.9 4.3E-09 9.4E-14 69.7 5.0 61 118-186 43-103 (110)
91 cd03209 GST_C_Mu GST_C family, 98.8 5.8E-09 1.3E-13 70.7 5.5 62 118-186 35-96 (121)
92 cd03192 GST_C_Sigma_like GST_C 98.8 4.3E-09 9.4E-14 69.2 4.6 65 118-186 39-103 (104)
93 cd03188 GST_C_Beta GST_C famil 98.8 4.2E-09 9E-14 70.3 4.6 61 118-186 43-103 (114)
94 cd03179 GST_C_1 GST_C family, 98.8 4.2E-09 9E-14 69.3 4.5 61 118-186 43-103 (105)
95 cd03185 GST_C_Tau GST_C family 98.8 6.3E-09 1.4E-13 70.8 5.4 67 117-186 34-102 (126)
96 cd03207 GST_C_8 GST_C family, 98.8 7.2E-09 1.6E-13 68.1 5.0 61 117-186 29-89 (103)
97 cd03183 GST_C_Theta GST_C fami 98.8 7.6E-09 1.6E-13 70.5 5.1 63 118-186 45-107 (126)
98 cd03177 GST_C_Delta_Epsilon GS 98.8 9.6E-09 2.1E-13 69.2 5.3 65 115-186 35-99 (118)
99 cd03178 GST_C_Ure2p_like GST_C 98.8 4.8E-09 1E-13 70.0 3.4 62 118-186 40-101 (113)
100 PRK10329 glutaredoxin-like pro 98.8 1.8E-08 3.9E-13 63.4 5.6 61 1-70 1-61 (81)
101 cd03211 GST_C_Metaxin2 GST_C f 98.8 4.9E-09 1.1E-13 71.6 2.6 72 113-186 52-124 (126)
102 cd03197 GST_C_mPGES2 GST_C fam 98.7 5.1E-08 1.1E-12 67.8 5.9 77 105-186 65-142 (149)
103 cd03181 GST_C_EFB1gamma GST_C 98.7 1.9E-08 4.2E-13 68.1 3.4 64 118-186 40-103 (123)
104 cd03205 GST_C_6 GST_C family, 98.6 7.7E-08 1.7E-12 62.7 5.2 62 117-186 36-97 (98)
105 cd03194 GST_C_3 GST_C family, 98.6 2E-07 4.4E-12 62.5 6.4 62 116-186 39-101 (114)
106 PRK11200 grxA glutaredoxin 1; 98.6 3.9E-07 8.5E-12 57.8 7.0 76 1-85 1-84 (85)
107 cd03027 GRX_DEP Glutaredoxin ( 98.5 2E-07 4.3E-12 57.4 5.3 63 15-77 6-69 (73)
108 COG0695 GrxC Glutaredoxin and 98.5 4.4E-07 9.6E-12 56.9 6.6 70 1-79 1-73 (80)
109 cd02066 GRX_family Glutaredoxi 98.5 4.4E-07 9.6E-12 55.0 5.7 62 18-79 8-70 (72)
110 cd03212 GST_C_Metaxin1_3 GST_C 98.5 6.4E-08 1.4E-12 67.0 1.9 67 116-186 62-131 (137)
111 KOG3028 Translocase of outer m 98.5 2.4E-06 5.1E-11 65.5 10.2 169 4-185 3-229 (313)
112 TIGR02196 GlrX_YruB Glutaredox 98.5 5.7E-07 1.2E-11 54.8 5.7 65 16-80 6-73 (74)
113 cd03418 GRX_GRXb_1_3_like Glut 98.4 8.7E-07 1.9E-11 54.6 6.4 65 17-81 7-73 (75)
114 cd02976 NrdH NrdH-redoxin (Nrd 98.4 5.6E-07 1.2E-11 54.8 4.9 57 16-72 6-63 (73)
115 cd03195 GST_C_4 GST_C family, 98.4 1E-06 2.2E-11 59.0 6.0 60 117-186 41-100 (114)
116 TIGR02181 GRX_bact Glutaredoxi 98.3 1.9E-06 4.2E-11 53.7 5.8 68 15-82 4-72 (79)
117 TIGR02194 GlrX_NrdH Glutaredox 98.2 1.9E-06 4.2E-11 52.8 4.4 53 15-67 4-56 (72)
118 TIGR02183 GRXA Glutaredoxin, G 98.2 8.3E-06 1.8E-10 51.8 6.2 71 15-85 5-83 (86)
119 TIGR02189 GlrX-like_plant Glut 98.2 1.3E-05 2.9E-10 52.3 7.2 62 18-79 16-81 (99)
120 cd03419 GRX_GRXh_1_2_like Glut 98.1 1.7E-05 3.7E-10 49.6 7.4 65 18-82 8-76 (82)
121 PF00462 Glutaredoxin: Glutare 98.1 2E-06 4.3E-11 50.7 2.6 54 17-70 6-60 (60)
122 TIGR00365 monothiol glutaredox 98.1 1.8E-05 3.8E-10 51.5 7.1 64 17-80 24-88 (97)
123 cd03028 GRX_PICOT_like Glutare 98.1 2.1E-05 4.6E-10 50.4 7.2 64 18-81 21-85 (90)
124 PHA03050 glutaredoxin; Provisi 98.1 2.3E-05 5E-10 51.9 7.5 64 15-78 18-88 (108)
125 PF10568 Tom37: Outer mitochon 98.1 3.1E-05 6.6E-10 47.4 7.4 60 14-80 8-71 (72)
126 TIGR02200 GlrX_actino Glutared 98.0 1.8E-05 4E-10 48.7 5.1 58 17-74 7-67 (77)
127 TIGR02180 GRX_euk Glutaredoxin 97.8 0.00011 2.4E-09 46.0 7.0 66 17-82 6-77 (84)
128 cd03031 GRX_GRX_like Glutaredo 97.5 0.00064 1.4E-08 47.5 7.0 77 2-81 1-82 (147)
129 PRK10824 glutaredoxin-4; Provi 97.4 0.00071 1.5E-08 45.2 6.5 64 17-80 27-91 (115)
130 PRK12759 bifunctional gluaredo 97.3 0.001 2.2E-08 54.4 6.9 61 18-78 10-79 (410)
131 PF14834 GST_C_4: Glutathione 97.1 0.00065 1.4E-08 44.9 3.8 67 97-165 10-88 (117)
132 PTZ00062 glutaredoxin; Provisi 97.1 0.0027 5.8E-08 46.9 7.0 62 18-79 126-188 (204)
133 cd03199 GST_C_GRX2 GST_C famil 97.1 0.0019 4.1E-08 43.9 5.7 61 116-186 58-118 (128)
134 KOG1752 Glutaredoxin and relat 96.9 0.0064 1.4E-07 39.9 6.8 64 18-81 22-89 (104)
135 PF04399 Glutaredoxin2_C: Glut 96.7 0.0018 3.9E-08 44.4 3.2 59 117-185 58-116 (132)
136 TIGR00412 redox_disulf_2 small 96.5 0.016 3.5E-07 35.6 6.1 57 1-71 1-61 (76)
137 cd02973 TRX_GRX_like Thioredox 96.2 0.015 3.2E-07 34.6 4.8 51 18-71 9-64 (67)
138 PF11287 DUF3088: Protein of u 95.9 0.049 1.1E-06 35.9 6.3 70 18-87 22-110 (112)
139 cd03030 GRX_SH3BGR Glutaredoxi 95.8 0.05 1.1E-06 34.9 6.2 73 3-78 2-79 (92)
140 PRK01655 spxA transcriptional 95.5 0.019 4.1E-07 39.4 3.6 31 15-45 5-35 (131)
141 cd03032 ArsC_Spx Arsenate Redu 95.2 0.031 6.8E-07 37.3 3.7 31 15-45 5-35 (115)
142 COG0278 Glutaredoxin-related p 95.0 0.14 3.1E-06 33.0 6.0 76 2-81 16-93 (105)
143 cd03036 ArsC_like Arsenate Red 94.7 0.035 7.7E-07 36.8 3.0 33 14-46 3-35 (111)
144 KOG1147 Glutamyl-tRNA syntheta 94.7 0.026 5.6E-07 47.0 2.7 104 67-185 45-150 (712)
145 PF13192 Thioredoxin_3: Thiore 94.5 0.11 2.4E-06 31.9 4.7 51 19-73 9-63 (76)
146 cd02977 ArsC_family Arsenate R 94.5 0.051 1.1E-06 35.6 3.4 30 15-44 4-33 (105)
147 PRK13344 spxA transcriptional 94.5 0.07 1.5E-06 36.6 4.1 32 15-46 5-36 (132)
148 PF09635 MetRS-N: MetRS-N bind 93.8 0.15 3.2E-06 34.2 4.4 28 59-86 35-64 (122)
149 TIGR01617 arsC_related transcr 93.1 0.097 2.1E-06 35.0 2.8 31 14-44 3-33 (117)
150 PF04908 SH3BGR: SH3-binding, 93.1 0.1 2.2E-06 33.9 2.8 74 1-77 1-84 (99)
151 PRK12559 transcriptional regul 92.5 0.19 4.1E-06 34.4 3.5 32 15-46 5-36 (131)
152 PF11801 Tom37_C: Tom37 C-term 92.3 0.6 1.3E-05 33.4 6.1 40 123-162 113-154 (168)
153 KOG3425 Uncharacterized conser 91.9 0.79 1.7E-05 30.7 5.7 80 3-82 28-121 (128)
154 cd03035 ArsC_Yffb Arsenate Red 91.9 0.27 5.9E-06 32.3 3.6 33 14-46 3-35 (105)
155 PF05768 DUF836: Glutaredoxin- 91.5 0.76 1.6E-05 28.5 5.2 55 2-67 1-57 (81)
156 cd01659 TRX_superfamily Thiore 90.8 0.44 9.6E-06 26.5 3.5 49 17-65 6-59 (69)
157 cd03033 ArsC_15kD Arsenate Red 90.6 0.34 7.3E-06 32.3 3.2 32 14-45 4-35 (113)
158 COG4545 Glutaredoxin-related p 90.0 1.1 2.3E-05 27.5 4.5 59 13-71 5-77 (85)
159 COG1393 ArsC Arsenate reductas 87.6 1.3 2.8E-05 29.7 4.3 31 15-45 6-36 (117)
160 cd03026 AhpF_NTD_C TRX-GRX-lik 87.4 1.8 3.9E-05 27.4 4.7 51 18-71 22-77 (89)
161 PRK10026 arsenate reductase; P 86.0 0.87 1.9E-05 31.6 2.9 33 14-46 6-38 (141)
162 TIGR01616 nitro_assoc nitrogen 85.6 1.1 2.4E-05 30.4 3.2 32 14-45 5-36 (126)
163 PHA02125 thioredoxin-like prot 84.7 3.1 6.8E-05 25.1 4.7 45 18-65 8-52 (75)
164 TIGR00411 redox_disulf_1 small 83.5 3.1 6.7E-05 25.2 4.4 50 18-68 9-62 (82)
165 KOG0911 Glutaredoxin-related p 82.8 4.5 9.7E-05 30.3 5.5 74 2-79 140-214 (227)
166 PRK10853 putative reductase; P 81.1 2.9 6.2E-05 28.1 3.7 32 14-45 4-35 (118)
167 TIGR00014 arsC arsenate reduct 78.8 2.9 6.4E-05 27.7 3.2 31 15-45 4-34 (114)
168 PF03960 ArsC: ArsC family; I 78.4 2.4 5.3E-05 27.8 2.7 29 16-44 2-30 (110)
169 PF06110 DUF953: Eukaryotic pr 78.0 2.8 6.2E-05 28.2 2.9 62 14-75 32-107 (119)
170 cd03034 ArsC_ArsC Arsenate Red 76.6 4.3 9.3E-05 26.8 3.5 31 14-44 3-33 (112)
171 COG5515 Uncharacterized conser 66.3 4.2 9.1E-05 23.7 1.4 27 1-32 1-27 (70)
172 PRK15317 alkyl hydroperoxide r 54.9 10 0.00022 32.1 2.4 68 16-84 124-198 (517)
173 TIGR03140 AhpF alkyl hydropero 54.8 8.9 0.00019 32.5 2.0 66 17-83 126-198 (515)
174 PF06953 ArsD: Arsenical resis 54.2 32 0.0007 23.3 4.3 66 2-69 3-82 (123)
175 TIGR02681 phage_pRha phage reg 50.7 19 0.00041 23.7 2.7 26 60-85 2-28 (108)
176 cd02975 PfPDO_like_N Pyrococcu 49.9 30 0.00066 22.6 3.6 47 18-65 32-81 (113)
177 TIGR03143 AhpF_homolog putativ 45.8 44 0.00095 28.7 4.8 52 17-71 485-541 (555)
178 PRK09266 hypothetical protein; 45.1 30 0.00064 26.5 3.4 57 29-85 200-259 (266)
179 TIGR01295 PedC_BrcD bacterioci 43.9 96 0.0021 20.7 5.4 27 17-43 32-62 (122)
180 KOG2824 Glutaredoxin-related p 38.9 58 0.0013 25.3 4.0 58 22-79 149-211 (281)
181 cd05295 MDH_like Malate dehydr 36.8 80 0.0017 26.5 4.9 74 18-91 2-92 (452)
182 cd02953 DsbDgamma DsbD gamma f 35.8 1.1E+02 0.0023 19.3 4.5 46 18-64 21-77 (104)
183 KOG1668 Elongation factor 1 be 34.8 24 0.00052 26.6 1.4 33 124-158 10-42 (231)
184 PF04134 DUF393: Protein of un 31.4 1.5E+02 0.0032 19.1 5.7 63 18-82 5-76 (114)
185 cd02952 TRP14_like Human TRX-r 29.3 1.8E+02 0.0039 19.4 6.2 58 15-72 35-105 (119)
186 cd02947 TRX_family TRX family; 29.2 1.2E+02 0.0027 17.6 5.8 48 18-68 20-74 (93)
187 cd02949 TRX_NTR TRX domain, no 29.1 1.5E+02 0.0032 18.4 5.3 51 18-69 23-79 (97)
188 PF10990 DUF2809: Protein of u 29.0 37 0.00079 21.6 1.4 18 139-156 70-87 (91)
189 PF00085 Thioredoxin: Thioredo 28.6 1.4E+02 0.0031 18.2 7.9 63 19-82 28-102 (103)
190 TIGR03396 PC_PLC phospholipase 28.2 96 0.0021 27.7 4.1 50 57-106 389-446 (690)
191 TIGR01764 excise DNA binding d 27.8 99 0.0021 16.0 3.4 26 56-81 23-48 (49)
192 cd00449 PLPDE_IV PyridoxaL 5'- 27.1 62 0.0014 24.4 2.6 54 29-82 196-254 (256)
193 cd01557 BCAT_beta_family BCAT_ 26.4 43 0.00094 25.9 1.6 56 29-84 211-273 (279)
194 cd08200 catalase_peroxidase_2 25.5 2.3E+02 0.0049 22.5 5.3 43 122-164 73-115 (297)
195 PHA03158 hypothetical protein; 24.6 2.9E+02 0.0063 20.4 6.3 66 66-135 205-271 (273)
196 PRK06606 branched-chain amino 24.4 68 0.0015 25.2 2.4 54 29-82 228-286 (306)
197 PRK06092 4-amino-4-deoxychoris 24.2 1E+02 0.0022 23.6 3.3 55 29-84 208-265 (268)
198 PF09314 DUF1972: Domain of un 23.5 77 0.0017 23.1 2.4 20 66-85 154-173 (185)
199 PF15608 PELOTA_1: PELOTA RNA 23.4 98 0.0021 20.1 2.6 22 19-40 65-86 (100)
200 cd02989 Phd_like_TxnDC9 Phosdu 22.9 2.2E+02 0.0049 18.4 6.1 53 18-71 32-89 (113)
201 PRK13356 aminotransferase; Pro 22.8 77 0.0017 24.5 2.5 53 29-82 221-276 (286)
202 PF07056 DUF1335: Protein of u 22.7 1.4E+02 0.003 20.3 3.2 31 121-154 43-73 (131)
203 cd04911 ACT_AKiii-YclM-BS_1 AC 21.0 1.1E+02 0.0025 18.7 2.4 24 19-42 14-37 (76)
204 TIGR02187 GlrX_arch Glutaredox 21.0 90 0.002 23.0 2.4 49 17-66 142-193 (215)
205 TIGR01122 ilvE_I branched-chai 20.5 95 0.0021 24.2 2.5 54 29-82 220-278 (298)
206 PRK12702 mannosyl-3-phosphogly 20.4 3.1E+02 0.0067 21.8 5.2 54 19-73 19-72 (302)
207 PRK07650 4-amino-4-deoxychoris 20.0 1.1E+02 0.0024 23.6 2.8 54 29-82 212-269 (283)
No 1
>PLN02378 glutathione S-transferase DHAR1
Probab=100.00 E-value=2.4e-38 Score=235.47 Aligned_cols=186 Identities=76% Similarity=1.249 Sum_probs=155.7
Q ss_pred CceeehhhhcccCCCCCCCChhHHHHHHHHHhcCCCceeEeccCCCCchhhhhhCCCCCccEEEeCCeeeeeHHHHHHHH
Q 029887 1 MAVEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFMEISPEGKVPVVKFDDKWVADSDVIVRII 80 (186)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~sp~~~~vr~~L~~~gi~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~g~~l~eS~aI~~yL 80 (186)
|.||||+|++..+..+++.||||+|++++|+++|++|+.+.+++..++++|++.||.|+||+|+++|.+|+||.+|++||
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~p~~~rv~~~L~e~gl~~e~~~v~~~~~~~~~l~inP~G~VPvL~~~~~~l~ES~aI~~YL 80 (213)
T PLN02378 1 MALEICVKAAVGAPDHLGDCPFSQRALLTLEEKSLTYKIHLINLSDKPQWFLDISPQGKVPVLKIDDKWVTDSDVIVGIL 80 (213)
T ss_pred CceehhhhccCCCCCCCCCCcchHHHHHHHHHcCCCCeEEEeCcccCCHHHHHhCCCCCCCEEEECCEEecCHHHHHHHH
Confidence 88999999998899999999999999999999999999999999888889999999999999999999999999999999
Q ss_pred HHhCCCCCCCCChHHHhhccccchHHHHhhcCCCCCchHHHHHHHHHHHHHHHHhhCCCCcccCCCCChhHHHhhhHHHH
Q 029887 81 EEKYPEPSLTNPPEFASLGSKIFPSFVNFLKSKDPNDGTEQALLEELKALDEHLKTHGGPFIAGEKVTAVDLSLAPKLYH 160 (186)
Q Consensus 81 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~yl~G~~~t~aDi~~~~~l~~ 160 (186)
+++|+...+.++.+++++..+++..+..+.......+...+.+.+.|..+|+.|+.++|+|++|+++|+|||++++.+.+
T Consensus 81 ~~~~~~~~l~~~~~~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~fl~Gd~~T~ADi~l~~~~~~ 160 (213)
T PLN02378 81 EEKYPDPPLKTPAEFASVGSNIFGTFGTFLKSKDSNDGSEHALLVELEALENHLKSHDGPFIAGERVSAVDLSLAPKLYH 160 (213)
T ss_pred HHhCCCCCCCCHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHhcCCCCCcCCCCCchhhHHHHHHHHH
Confidence 99998766655566666666666655555444333445557788899999999986557999999999999999999888
Q ss_pred HHHHhhhccCCCCCccchhhhccccC
Q 029887 161 LQVALEHFKQWTVPESLAHVHGYTKV 186 (186)
Q Consensus 161 ~~~~~~~~~~~~~~~~~p~l~~w~~~ 186 (186)
+.........+...+.+|+|++|++|
T Consensus 161 l~~~~~~~~~~~~~~~~p~l~~w~~~ 186 (213)
T PLN02378 161 LQVALGHFKSWSVPESFPHVHNYMKT 186 (213)
T ss_pred HHHHHHHhcCCCchhHhHHHHHHHHH
Confidence 76533333344445789999999874
No 2
>PLN02817 glutathione dehydrogenase (ascorbate)
Probab=100.00 E-value=2.7e-35 Score=224.65 Aligned_cols=184 Identities=63% Similarity=1.161 Sum_probs=156.2
Q ss_pred ceeehhhhcccCCCCCCCChhHHHHHHHHHhcCCCceeEeccCCCCchhhhhhCCCCCccEEEeCCeeeeeHHHHHHHHH
Q 029887 2 AVEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFMEISPEGKVPVVKFDDKWVADSDVIVRIIE 81 (186)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~sp~~~~vr~~L~~~gi~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~g~~l~eS~aI~~yL~ 81 (186)
.+|++++++.......+.||||+|++++|+++|++|+.+.++..+++++|+++||.|+||+|+++|.+|+||.+|++||+
T Consensus 55 ~~~~~~~~~~~~~~~~g~cp~s~rV~i~L~ekgi~ye~~~vdl~~~~~~fl~iNP~GkVPvL~~d~~~L~ES~aI~~YL~ 134 (265)
T PLN02817 55 PLEVCVKASLTVPNKLGDCPFCQRVLLTLEEKHLPYDMKLVDLTNKPEWFLKISPEGKVPVVKLDEKWVADSDVITQALE 134 (265)
T ss_pred cHHHHHhcccCCCCcCCCCcHHHHHHHHHHHcCCCCEEEEeCcCcCCHHHHhhCCCCCCCEEEECCEEEecHHHHHHHHH
Confidence 47899998887788899999999999999999999999999998889999999999999999999999999999999999
Q ss_pred HhCCCCCCCCChHHHhhccccchHHHHhhcCCCCCchHHHHHHHHHHHHHHHHhhCCCCcccCCCCChhHHHhhhHHHHH
Q 029887 82 EKYPEPSLTNPPEFASLGSKIFPSFVNFLKSKDPNDGTEQALLEELKALDEHLKTHGGPFIAGEKVTAVDLSLAPKLYHL 161 (186)
Q Consensus 82 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~yl~G~~~t~aDi~~~~~l~~~ 161 (186)
++|+...+.++.+++.+..+++..+..++......+...+.+.+.+..||+.|+++ |+|++|+++|+|||++++.+.++
T Consensus 135 e~~p~~~L~~~~era~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~LE~~L~~~-g~yl~Gd~~SlADi~l~p~L~~l 213 (265)
T PLN02817 135 EKYPDPPLATPPEKASVGSKIFSTFIGFLKSKDPGDGTEQALLDELTSFDDYIKEN-GPFINGEKISAADLSLGPKLYHL 213 (265)
T ss_pred HHCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHhcC-CCeeCCCCCCHHHHHHHHHHHHH
Confidence 99998777777788888888877766655544333344567888999999999863 69999999999999999999887
Q ss_pred HHHhhhccCCCCCccchhhhccccC
Q 029887 162 QVALEHFKQWTVPESLAHVHGYTKV 186 (186)
Q Consensus 162 ~~~~~~~~~~~~~~~~p~l~~w~~~ 186 (186)
........++.+.+.+|+|.+|+++
T Consensus 214 ~~~~~~~~~~~i~~~~P~L~~w~~r 238 (265)
T PLN02817 214 EIALGHYKNWSVPDSLPFVKSYMKN 238 (265)
T ss_pred HHHHHHhcCCCccccCHHHHHHHHH
Confidence 7544334455556789999999864
No 3
>TIGR00862 O-ClC intracellular chloride channel protein. These proteins are thought to function in the regulation of the membrane potential and in transepithelial ion absorption and secretion in the kidney.
Probab=100.00 E-value=1.9e-34 Score=215.82 Aligned_cols=184 Identities=28% Similarity=0.536 Sum_probs=148.5
Q ss_pred ceeehhhhcccCCCCCCCChhHHHHHHHHHhcCCCceeEeccCCCCchhhhhhCCCCCccEEEeCCeeeeeHHHHHHHHH
Q 029887 2 AVEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFMEISPEGKVPVVKFDDKWVADSDVIVRIIE 81 (186)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~sp~~~~vr~~L~~~gi~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~g~~l~eS~aI~~yL~ 81 (186)
.||||++++ ......+.||+|+++|++|.++|++|+.+.+++..++++|+++||.|+||+|+++|.+|+||.+|++||+
T Consensus 2 ~~el~~ka~-~~~~~~~~cp~~~rv~i~L~ekgi~~e~~~vd~~~~~~~fl~inP~g~vPvL~~~g~~l~ES~aI~eYL~ 80 (236)
T TIGR00862 2 EIELFVKAG-SDGESIGNCPFSQRLFMILWLKGVVFNVTTVDLKRKPEDLQNLAPGTHPPFLTYNTEVKTDVNKIEEFLE 80 (236)
T ss_pred ceEEEEecC-CCCCcCCCCHhHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHCcCCCCCEEEECCEEeecHHHHHHHHH
Confidence 589999996 5678899999999999999999999999999999888999999999999999999999999999999999
Q ss_pred HhCCC---CCCCCChH-HHhhccccchHHHHhhcCCCC--CchHHHHHHHHHHHHHHHHhhC----------------CC
Q 029887 82 EKYPE---PSLTNPPE-FASLGSKIFPSFVNFLKSKDP--NDGTEQALLEELKALDEHLKTH----------------GG 139 (186)
Q Consensus 82 ~~~~~---~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~le~~L~~~----------------~~ 139 (186)
++|+. +.+.|.+. ..+....++..+..++..... .+...+.+.+.+..||+.|.+. ++
T Consensus 81 e~~~~~~~p~l~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Le~~L~~~~~~~~~~~~~~~~~~~~~ 160 (236)
T TIGR00862 81 ETLCPPRYPKLSPKHPESNTAGLDIFAKFSAYIKNSNPEANDNLEKGLLKALKKLDDYLNSPLPEEIDEDSAEDEKVSRR 160 (236)
T ss_pred HHcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccCC
Confidence 99975 23444322 222222355555554433221 2334456889999999999741 35
Q ss_pred CcccCCCCChhHHHhhhHHHHHHHHhhhccCCCCCccchhhhccccC
Q 029887 140 PFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYTKV 186 (186)
Q Consensus 140 ~yl~G~~~t~aDi~~~~~l~~~~~~~~~~~~~~~~~~~p~l~~w~~~ 186 (186)
+|+.|+++|+|||++++.+.++......+.++.+.+.+|+|.+|++|
T Consensus 161 ~f~~Gd~~tlaD~~l~p~l~~l~~~~~~~~~~~i~~~~p~l~~w~~~ 207 (236)
T TIGR00862 161 KFLDGDELTLADCNLLPKLHIVKVVAKKYRNFDIPAEFTGVWRYLSN 207 (236)
T ss_pred CcccCCccchhhHHHHHHHHHHHHHHHHHhCcCccccCchHHHHHHH
Confidence 99999999999999999999998765566787777999999999874
No 4
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=100.00 E-value=3e-32 Score=202.48 Aligned_cols=168 Identities=20% Similarity=0.285 Sum_probs=131.7
Q ss_pred cCCCCCCCChhHHHHHHHHHhcCCCceeEeccCCCCchhhhhhCCCCCccEEEeCCeeeeeHHHHHHHHHHhCCCCCCCC
Q 029887 12 GAPDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFMEISPEGKVPVVKFDDKWVADSDVIVRIIEEKYPEPSLTN 91 (186)
Q Consensus 12 ~~~~~~~~sp~~~~vr~~L~~~gi~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~g~~l~eS~aI~~yL~~~~~~~~l~~ 91 (186)
..+++...||+|++||++|+++|++|+.+.++...++++|+++||.|+||+|+++|..|+||.||++||+++|+...+.|
T Consensus 11 ~~Ly~~~~s~~~~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~nP~g~VPvL~~~g~~l~ES~AIl~YL~~~~~~~~l~p 90 (211)
T PRK09481 11 MTLFSGPTDIYSHQVRIVLAEKGVSVEIEQVEKDNLPQDLIDLNPYQSVPTLVDRELTLYESRIIMEYLDERFPHPPLMP 90 (211)
T ss_pred eEEeCCCCChhHHHHHHHHHHCCCCCEEEeCCcccCCHHHHHhCCCCCCCEEEECCEEeeCHHHHHHHHHHhCCCCCCCC
Confidence 35667778999999999999999999999999888888999999999999999999999999999999999999877877
Q ss_pred Ch--HHHhhccccch---HHHH---hhcCCC--CCchHHHHHHHHHHHHHHHHhhCCCCcccCCCCChhHHHhhhHHHHH
Q 029887 92 PP--EFASLGSKIFP---SFVN---FLKSKD--PNDGTEQALLEELKALDEHLKTHGGPFIAGEKVTAVDLSLAPKLYHL 161 (186)
Q Consensus 92 ~~--~~~~~~~~~~~---~~~~---~~~~~~--~~~~~~~~~~~~l~~le~~L~~~~~~yl~G~~~t~aDi~~~~~l~~~ 161 (186)
.+ +++++..|+.. .+.. ...... ..+...+.+.+.+..+|+.|++ ++|++|+++|+|||++++++.++
T Consensus 91 ~~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~--~~~l~G~~~t~AD~~l~~~~~~~ 168 (211)
T PRK09481 91 VYPVARGESRLMMHRIEKDWYSLMNKIVNGSASEADAARKQLREELLAIAPVFGE--KPYFMSEEFSLVDCYLAPLLWRL 168 (211)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHhcc--CCcccCCCccHHHHHHHHHHHHH
Confidence 55 44444444421 1111 111111 1234456788889999999975 49999999999999999998776
Q ss_pred HHHhhhccCCCCC-ccchhhhccccC
Q 029887 162 QVALEHFKQWTVP-ESLAHVHGYTKV 186 (186)
Q Consensus 162 ~~~~~~~~~~~~~-~~~p~l~~w~~~ 186 (186)
... ++... +.+|+|++|++|
T Consensus 169 ~~~-----~~~~~~~~~p~l~~w~~~ 189 (211)
T PRK09481 169 PVL-----GIELSGPGAKELKGYMTR 189 (211)
T ss_pred Hhc-----CCCCCCCCChhHHHHHHH
Confidence 542 22222 578999999874
No 5
>KOG0406 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=1.2e-31 Score=196.66 Aligned_cols=172 Identities=25% Similarity=0.495 Sum_probs=142.7
Q ss_pred CCCCCCChhHHHHHHHHHhcCCCceeEeccCCCCchhhhhhC-CCCCccEEEeCCeeeeeHHHHHHHHHHhCC-CCCCCC
Q 029887 14 PDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFMEIS-PEGKVPVVKFDDKWVADSDVIVRIIEEKYP-EPSLTN 91 (186)
Q Consensus 14 ~~~~~~sp~~~~vr~~L~~~gi~~~~~~~~~~~~~~~~~~~~-p~~~vP~L~~~g~~l~eS~aI~~yL~~~~~-~~~l~~ 91 (186)
++++..|||++|++|+|++|||+|+.+.++..++++++++.| +.++||||+++|.+|+||..|++||++.++ ..+++|
T Consensus 12 L~~~w~sPfa~R~~iaL~~KgI~yE~veedl~~Ks~~ll~~np~hkKVPvL~Hn~k~i~ESliiveYiDe~w~~~~~iLP 91 (231)
T KOG0406|consen 12 LLGMWFSPFAQRVRIALKLKGIPYEYVEEDLTNKSEWLLEKNPVHKKVPVLEHNGKPICESLIIVEYIDETWPSGPPILP 91 (231)
T ss_pred EEEeecChHHHHHHHHHHhcCCceEEEecCCCCCCHHHHHhccccccCCEEEECCceehhhHHHHHHHHhhccCCCCCCC
Confidence 566779999999999999999999999999999999999999 589999999999999999999999999999 578999
Q ss_pred ChHHHhhccccchHHHH---------hh--cCCCCCchHHHHHHHHHHHHHHHHhhCCCCcccCCCCChhHHHhhhHHHH
Q 029887 92 PPEFASLGSKIFPSFVN---------FL--KSKDPNDGTEQALLEELKALDEHLKTHGGPFIAGEKVTAVDLSLAPKLYH 160 (186)
Q Consensus 92 ~~~~~~~~~~~~~~~~~---------~~--~~~~~~~~~~~~~~~~l~~le~~L~~~~~~yl~G~~~t~aDi~~~~~l~~ 160 (186)
.|...+..+.+...+.. .. ...+..+.+.+++.+.|..+|+.|.+ +++|+.|++++++|+++++++.+
T Consensus 92 ~DPy~Ra~arfwa~~id~~~~~~~~~~~~~~~~e~~~~~~~e~~e~l~~lE~el~k-~k~~fgG~~~G~vDi~~~p~~~~ 170 (231)
T KOG0406|consen 92 SDPYERAQARFWAEYIDKKVFFVGRFVVAAKGGEEQEAAKEELREALKVLEEELGK-GKDFFGGETIGFVDIAIGPSFER 170 (231)
T ss_pred CCHHHHHHHHHHHHHHHhHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHhc-CCCCCCCCCcCHhhhhHHhhHHH
Confidence 88766655544433221 11 11234456678899999999999993 46899999999999999998888
Q ss_pred HHHHhhhcc--CCCCCccchhhhccccC
Q 029887 161 LQVALEHFK--QWTVPESLAHVHGYTKV 186 (186)
Q Consensus 161 ~~~~~~~~~--~~~~~~~~p~l~~w~~~ 186 (186)
+........ .....+.+|.|.+|.+|
T Consensus 171 ~~~~~~~~~~~~~~~~~~~P~L~~W~~~ 198 (231)
T KOG0406|consen 171 WLAVLEKFGGVKFIIEEETPKLIKWIKR 198 (231)
T ss_pred HHHHHHHhcCcccCCCCCCccHHHHHHH
Confidence 877766655 33346889999999874
No 6
>KOG1422 consensus Intracellular Cl- channel CLIC, contains GST domain [Inorganic ion transport and metabolism]
Probab=99.97 E-value=4.8e-30 Score=182.66 Aligned_cols=185 Identities=53% Similarity=0.924 Sum_probs=170.0
Q ss_pred CceeehhhhcccCCCCCCCChhHHHHHHHHHhcCCCceeEeccCCCCchhhhhhCCCCCccEEEeCCeeeeeHHHHHHHH
Q 029887 1 MAVEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFMEISPEGKVPVVKFDDKWVADSDVIVRII 80 (186)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~sp~~~~vr~~L~~~gi~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~g~~l~eS~aI~~yL 80 (186)
|.||++++|+++.+...+.|||||++.+.|.++|++|....++...+++||.++.|.+++|+|..++.+++||..|-+.|
T Consensus 2 p~iel~vkA~s~~~~~~Gdcpf~qr~~m~L~~k~~~f~vttVd~~~kp~~f~~~sp~~~~P~l~~d~~~~tDs~~Ie~~L 81 (221)
T KOG1422|consen 2 PEIELCVKAGSDGPDSLGDCPFCQRLFMTLELKGVPFKVTTVDLSRKPEWFLDISPGGKPPVLKFDEKWVTDSDKIEEFL 81 (221)
T ss_pred CceEEEEEeccCCcccCCCChhHHHHHHHHHHcCCCceEEEeecCCCcHHHHhhCCCCCCCeEEeCCceeccHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCCCCC--ChHHHhhccccchHHHHhhcC-CC-CCchHHHHHHHHHHHHHHHHhh-CCCCcccCCCCChhHHHhh
Q 029887 81 EEKYPEPSLTN--PPEFASLGSKIFPSFVNFLKS-KD-PNDGTEQALLEELKALDEHLKT-HGGPFIAGEKVTAVDLSLA 155 (186)
Q Consensus 81 ~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~l~~le~~L~~-~~~~yl~G~~~t~aDi~~~ 155 (186)
+++++.+.+.- ..+.+.+..+++..|..++.. ++ ..+..++.+.+.|..|+..|++ +.|+|+.||++|.|||.+.
T Consensus 82 ee~l~~p~~~~~~~~E~asag~diF~kF~~fi~ksk~~~n~~~e~~Ll~~L~~Ld~yL~sp~~~~Fl~Gd~lt~aDcsLl 161 (221)
T KOG1422|consen 82 EEKLPPPKLPTLAPPESASAGSDIFAKFSAFIKKSKDAANDGLEKALLKELEKLDDYLKSPSRRKFLDGDKLTLADCSLL 161 (221)
T ss_pred HHhcCCCCCcccCCHHHHhhHHHHHHHHHHHHhCchhhccchHHHHHHHHHHHHHHHhcCccCCccccCCeeeeehhhhc
Confidence 99999876543 678888999999999999643 33 3456678889999999999998 5689999999999999999
Q ss_pred hHHHHHHHHhhhccCCCCCccchhhhcccc
Q 029887 156 PKLYHLQVALEHFKQWTVPESLAHVHGYTK 185 (186)
Q Consensus 156 ~~l~~~~~~~~~~~~~~~~~~~p~l~~w~~ 185 (186)
|-|+.++.+..+++++.+++..+.+.+|++
T Consensus 162 PKL~~i~va~k~yk~~~IP~~lt~V~rYl~ 191 (221)
T KOG1422|consen 162 PKLHHIKVAAKHYKNFEIPASLTGVWRYLK 191 (221)
T ss_pred hhHHHHHHHHHHhcCCCCchhhhHHHHHHH
Confidence 999999999999999999999999999975
No 7
>TIGR01262 maiA maleylacetoacetate isomerase. Maleylacetoacetate isomerase is an enzyme of tyrosine and phenylalanine catabolism. It requires glutathione and belongs by homology to the zeta family of glutathione S-transferases. The enzyme (EC 5.2.1.2) is described as active also on maleylpyruvate, and the example from a Ralstonia sp. catabolic plasmid is described as a maleylpyruvate isomerase involved in gentisate catabolism.
Probab=99.96 E-value=3.8e-29 Score=185.58 Aligned_cols=167 Identities=22% Similarity=0.382 Sum_probs=126.8
Q ss_pred CCCCCCChhHHHHHHHHHhcCCCceeEeccCCC----CchhhhhhCCCCCccEEEeCCeeeeeHHHHHHHHHHhCCCCCC
Q 029887 14 PDILGDCPFSQRALLTLEEKKVPYKRHLINISD----KPQWFMEISPEGKVPVVKFDDKWVADSDVIVRIIEEKYPEPSL 89 (186)
Q Consensus 14 ~~~~~~sp~~~~vr~~L~~~gi~~~~~~~~~~~----~~~~~~~~~p~~~vP~L~~~g~~l~eS~aI~~yL~~~~~~~~l 89 (186)
++++..||+++++|++|.++||+|+.+.++... +++++.+.||.|++|+|+++|.+|+||.+|++||+++++..++
T Consensus 2 Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~nP~g~vP~L~~~g~~l~ES~aI~~yl~~~~~~~~l 81 (210)
T TIGR01262 2 LYSYWRSSCSYRVRIALALKGIDYEYVPVNLLRDGEQRSPEFLALNPQGLVPTLDIDGEVLTQSLAIIEYLEETYPDPPL 81 (210)
T ss_pred cccCCCCCchHHHHHHHHHCCCCceEEecccccccccCChhhhhcCCCCcCCEEEECCEEeecHHHHHHHHHHhCCCCCC
Confidence 456678999999999999999999999998622 4677999999999999999999999999999999999987777
Q ss_pred CCCh--HHHhhccccch-----------HHHHhhcCC---CCC---chHHHHHHHHHHHHHHHHhhCCCCcccCCCCChh
Q 029887 90 TNPP--EFASLGSKIFP-----------SFVNFLKSK---DPN---DGTEQALLEELKALDEHLKTHGGPFIAGEKVTAV 150 (186)
Q Consensus 90 ~~~~--~~~~~~~~~~~-----------~~~~~~~~~---~~~---~~~~~~~~~~l~~le~~L~~~~~~yl~G~~~t~a 150 (186)
.|.+ +++++..|+.. .+....... ... +...+.+.+.|+.||+.|++++|+|++|+++|+|
T Consensus 82 ~p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~T~A 161 (210)
T TIGR01262 82 LPADPIKRARVRALALLIACDIHPLNNLRVLQYLREKLGVEEEARNRWYQHWISKGFAALEALLQPHAGAFCVGDTPTLA 161 (210)
T ss_pred CCCCHHHHHHHHHHHHHHhcccChhhhhhHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCEeeCCCCCHH
Confidence 7743 44444333211 011111111 111 1233568889999999999766789999999999
Q ss_pred HHHhhhHHHHHHHHhhhccCCCCCccchhhhccccC
Q 029887 151 DLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYTKV 186 (186)
Q Consensus 151 Di~~~~~l~~~~~~~~~~~~~~~~~~~p~l~~w~~~ 186 (186)
||++++++.++.. . +.. .++||+|++|+++
T Consensus 162 Di~~~~~l~~~~~----~-~~~-~~~~p~l~~~~~~ 191 (210)
T TIGR01262 162 DLCLVPQVYNAER----F-GVD-LTPYPTLRRIAAA 191 (210)
T ss_pred HHHHHHHHHHHHH----c-CCC-cccchHHHHHHHH
Confidence 9999999887642 1 222 3789999999874
No 8
>PLN02473 glutathione S-transferase
Probab=99.96 E-value=7.6e-29 Score=184.52 Aligned_cols=167 Identities=19% Similarity=0.248 Sum_probs=122.9
Q ss_pred CCCCCChhHHHHHHHHHhcCCCceeEeccCCC---CchhhhhhCCCCCccEEEeCCeeeeeHHHHHHHHHHhCCCC--CC
Q 029887 15 DILGDCPFSQRALLTLEEKKVPYKRHLINISD---KPQWFMEISPEGKVPVVKFDDKWVADSDVIVRIIEEKYPEP--SL 89 (186)
Q Consensus 15 ~~~~~sp~~~~vr~~L~~~gi~~~~~~~~~~~---~~~~~~~~~p~~~vP~L~~~g~~l~eS~aI~~yL~~~~~~~--~l 89 (186)
|....||+++||+++|.++|++|+.+.++..+ .+++++++||.|+||+|+++|.+|+||.||++||+++++.. ++
T Consensus 6 y~~~~s~~~~rv~~~L~e~gi~ye~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~~g~~l~ES~aI~~YL~~~~~~~~~~l 85 (214)
T PLN02473 6 YGQIKAANPQRVLLCFLEKGIEFEVIHVDLDKLEQKKPEHLLRQPFGQVPAIEDGDLKLFESRAIARYYATKYADQGTDL 85 (214)
T ss_pred ecCCCCCchHHHHHHHHHcCCCceEEEecCcccccCCHHHHhhCCCCCCCeEEECCEEEEehHHHHHHHHHHcCCcCCCC
Confidence 33446899999999999999999999998763 56778899999999999999999999999999999999753 57
Q ss_pred CCCh--HHHhhccccc---hHH--------H-HhhcC--CCCC-----chHHHHHHHHHHHHHHHHhhCCCCcccCCCCC
Q 029887 90 TNPP--EFASLGSKIF---PSF--------V-NFLKS--KDPN-----DGTEQALLEELKALDEHLKTHGGPFIAGEKVT 148 (186)
Q Consensus 90 ~~~~--~~~~~~~~~~---~~~--------~-~~~~~--~~~~-----~~~~~~~~~~l~~le~~L~~~~~~yl~G~~~t 148 (186)
.|.+ +++++..|+. ..+ . ..+.. .... +...+++.+.++.+|+.|+++ +|++|+++|
T Consensus 86 ~p~~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~--~~l~Gd~~t 163 (214)
T PLN02473 86 LGKTLEHRAIVDQWVEVENNYFYAVALPLVINLVFKPRLGEPCDVALVEELKVKFDKVLDVYENRLATN--RYLGGDEFT 163 (214)
T ss_pred CCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhcccccCCCChHHHHHHHHHHHHHHHHHHHHhccC--CcccCCCCC
Confidence 7754 3444443331 101 0 11111 1111 223467788899999999865 899999999
Q ss_pred hhHHHhhhHHHHHHHHhhhccCCCCCccchhhhccccC
Q 029887 149 AVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYTKV 186 (186)
Q Consensus 149 ~aDi~~~~~l~~~~~~~~~~~~~~~~~~~p~l~~w~~~ 186 (186)
+|||++++.+.++.... ... ...+++|+|.+|++|
T Consensus 164 ~ADi~~~~~~~~~~~~~-~~~--~~~~~~P~l~~w~~~ 198 (214)
T PLN02473 164 LADLTHMPGMRYIMNET-SLS--GLVTSRENLNRWWNE 198 (214)
T ss_pred HHHHHHHHHHHHHHhcc-ccH--HHHhcCHHHHHHHHH
Confidence 99999999887654311 111 124789999999875
No 9
>PLN02395 glutathione S-transferase
Probab=99.96 E-value=8.6e-29 Score=184.32 Aligned_cols=171 Identities=23% Similarity=0.306 Sum_probs=124.8
Q ss_pred CceeehhhhcccCCCCCCCChhHHHHHHHHHhcCCCceeEeccCC---CCchhhhhhCCCCCccEEEeCCeeeeeHHHHH
Q 029887 1 MAVEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINIS---DKPQWFMEISPEGKVPVVKFDDKWVADSDVIV 77 (186)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~sp~~~~vr~~L~~~gi~~~~~~~~~~---~~~~~~~~~~p~~~vP~L~~~g~~l~eS~aI~ 77 (186)
|+++||.- .+++++|++++|.++|++|+.+.++.. ..+++|++.||.|+||+|+++|.+|+||.+|+
T Consensus 1 ~~~~ly~~----------~~~~~~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~~~~~l~ES~aI~ 70 (215)
T PLN02395 1 MVLKVYGP----------AFASPKRALVTLIEKGVEFETVPVDLMKGEHKQPEYLALQPFGVVPVIVDGDYKIFESRAIM 70 (215)
T ss_pred CeEEEEcC----------CcCcHHHHHHHHHHcCCCceEEEeccccCCcCCHHHHhhCCCCCCCEEEECCEEEEcHHHHH
Confidence 67777753 345689999999999999999999875 35678999999999999999999999999999
Q ss_pred HHHHHhCCCC--CCCCCh--HHHhhccccc-------hHHHHh----hc-----CCCCC---chHHHHHHHHHHHHHHHH
Q 029887 78 RIIEEKYPEP--SLTNPP--EFASLGSKIF-------PSFVNF----LK-----SKDPN---DGTEQALLEELKALDEHL 134 (186)
Q Consensus 78 ~yL~~~~~~~--~l~~~~--~~~~~~~~~~-------~~~~~~----~~-----~~~~~---~~~~~~~~~~l~~le~~L 134 (186)
+||+++++.. .+.|.+ +++++..|+. ..+... .. ..... +...+.+.+.++.+|+.|
T Consensus 71 ~YL~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L 150 (215)
T PLN02395 71 RYYAEKYRSQGPDLLGKTIEERGQVEQWLDVEATSYHPPLLNLTLHILFASKMGFPADEKVIKESEEKLAKVLDVYEARL 150 (215)
T ss_pred HHHHHHcCCCCcCcCCCChhHHHHHHHHHHHHHHhcCchHHHHHHHHHhhhhccCCCcHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999753 577754 3444444332 111110 00 01111 234566788899999999
Q ss_pred hhCCCCcccCCCCChhHHHhhhHHHHHHHHhhhccCCCCCccchhhhccccC
Q 029887 135 KTHGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYTKV 186 (186)
Q Consensus 135 ~~~~~~yl~G~~~t~aDi~~~~~l~~~~~~~~~~~~~~~~~~~p~l~~w~~~ 186 (186)
+++ +|++|+++|+||+++++++.++... .......+.+|+|++|+++
T Consensus 151 ~~~--~~l~G~~~s~ADi~l~~~~~~~~~~---~~~~~~~~~~p~L~~w~~~ 197 (215)
T PLN02395 151 SKS--KYLAGDFVSLADLAHLPFTEYLVGP---IGKAYLIKDRKHVSAWWDD 197 (215)
T ss_pred cCC--ccccCCCcCHHHHHHHHHHHHHhcc---cchhhhhccCchHHHHHHH
Confidence 765 8999999999999999887765321 1111124678999999874
No 10
>COG0625 Gst Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.1e-28 Score=183.26 Aligned_cols=165 Identities=27% Similarity=0.433 Sum_probs=127.0
Q ss_pred CCCCCCChhHHHHHHHHHhcCCCceeEeccCCC--CchhhhhhCCCCCccEEEeCCe-eeeeHHHHHHHHHHhCCCCCCC
Q 029887 14 PDILGDCPFSQRALLTLEEKKVPYKRHLINISD--KPQWFMEISPEGKVPVVKFDDK-WVADSDVIVRIIEEKYPEPSLT 90 (186)
Q Consensus 14 ~~~~~~sp~~~~vr~~L~~~gi~~~~~~~~~~~--~~~~~~~~~p~~~vP~L~~~g~-~l~eS~aI~~yL~~~~~~~~l~ 90 (186)
+++...||||.|++++|.++|++|+.+.++... .+++|.+.||.|+||+|+++|. +|+||.||++||+++||..++.
T Consensus 3 L~~~~~sp~~~kv~l~l~e~g~~ye~~~v~~~~~~~~~~~~~~nP~gkVPvL~~~~~~~l~ES~AI~~YL~~~~~~~~l~ 82 (211)
T COG0625 3 LYGSPTSPYSRKVRLALEEKGLPYEIVLVDLDAEQKPPDFLALNPLGKVPALVDDDGEVLTESGAILEYLAERYPGPPLL 82 (211)
T ss_pred eecCCCCcchHHHHHHHHHcCCCceEEEeCcccccCCHHHHhcCCCCCCCEEeeCCCCeeecHHHHHHHHHhhCCCCCcC
Confidence 455567899999999999999999999999974 7788999999999999998765 9999999999999999987677
Q ss_pred CChH-----HHhhccccc-------hHHHHhhcCC---------CCCchHHHHHHHHHHHHHHHHhhCCCCcccCCCCCh
Q 029887 91 NPPE-----FASLGSKIF-------PSFVNFLKSK---------DPNDGTEQALLEELKALDEHLKTHGGPFIAGEKVTA 149 (186)
Q Consensus 91 ~~~~-----~~~~~~~~~-------~~~~~~~~~~---------~~~~~~~~~~~~~l~~le~~L~~~~~~yl~G~~~t~ 149 (186)
|.+. +.....|+. ..+....... ...+.....+.+.+..+|+.|+.+ +|++|+++|+
T Consensus 83 p~~~~~r~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~--~~l~G~~~ti 160 (211)
T COG0625 83 PADPLARRARALLLWWLFFAASDLHPVIGQRRRALLGSEPELLEAALEAARAEIRALLALLEALLADG--PYLAGDRFTI 160 (211)
T ss_pred CCCchhHHHHHHHHHHHHHHHhcccHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHhccC--CcccCCCCCH
Confidence 7543 333333322 2222211111 111344567888999999999975 9999999999
Q ss_pred hHHHhhhHHHHHHHHhhhccCCCCCccchhhhccccC
Q 029887 150 VDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYTKV 186 (186)
Q Consensus 150 aDi~~~~~l~~~~~~~~~~~~~~~~~~~p~l~~w~~~ 186 (186)
||+.+++.+.++.. .+... +.+|+|.+|++|
T Consensus 161 AD~~~~~~~~~~~~-----~~~~~-~~~p~l~~w~~r 191 (211)
T COG0625 161 ADIALAPLLWRLAL-----LGEEL-ADYPALKAWYER 191 (211)
T ss_pred HHHHHHHHHHHhhh-----cCccc-ccChHHHHHHHH
Confidence 99999999888553 22222 679999999874
No 11
>PRK15113 glutathione S-transferase; Provisional
Probab=99.96 E-value=4.2e-28 Score=180.59 Aligned_cols=158 Identities=18% Similarity=0.259 Sum_probs=120.8
Q ss_pred CChhHHHHHHHHHhcCCCceeEeccCCC---CchhhhhhCCCCCccEEEeCCeeeeeHHHHHHHHHHhCCCCC---CCCC
Q 029887 19 DCPFSQRALLTLEEKKVPYKRHLINISD---KPQWFMEISPEGKVPVVKFDDKWVADSDVIVRIIEEKYPEPS---LTNP 92 (186)
Q Consensus 19 ~sp~~~~vr~~L~~~gi~~~~~~~~~~~---~~~~~~~~~p~~~vP~L~~~g~~l~eS~aI~~yL~~~~~~~~---l~~~ 92 (186)
.||+|++++++|.++||+|+.+.++..+ ..++|++.||.|+||+|+++|.+|+||.||++||+++++... +.|.
T Consensus 15 ~s~~~~rv~~~l~e~gi~~e~~~v~~~~~~~~~~~~~~~nP~g~VP~L~~~~~~l~ES~aI~~YL~~~~~~~~~~~l~p~ 94 (214)
T PRK15113 15 FSPYVMSAFVALQEKGLPFELKTVDLDAGEHLQPTYQGYSLTRRVPTLQHDDFELSESSAIAEYLEERFAPPAWERIYPA 94 (214)
T ss_pred CCchHHHHHHHHHHcCCCCeEEEeCCCCccccCHHHHhcCCCCCCCEEEECCEEEecHHHHHHHHHHHcCCCCccccCCC
Confidence 5999999999999999999999999865 457899999999999999999999999999999999998765 7775
Q ss_pred h--HHHhhccccch---HHHHh---------hcC---CCCCchHHHHHHHHHHHHHHHHhhCCCCcccCCCCChhHHHhh
Q 029887 93 P--EFASLGSKIFP---SFVNF---------LKS---KDPNDGTEQALLEELKALDEHLKTHGGPFIAGEKVTAVDLSLA 155 (186)
Q Consensus 93 ~--~~~~~~~~~~~---~~~~~---------~~~---~~~~~~~~~~~~~~l~~le~~L~~~~~~yl~G~~~t~aDi~~~ 155 (186)
+ +++++..|+.. .+... ... ....+...+.+.+.+..+|+.|+.. ++|++|+ +|+|||+++
T Consensus 95 ~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~-~~~l~G~-~TlADi~l~ 172 (214)
T PRK15113 95 DLQARARARQIQAWLRSDLMPLREERPTDVVFAGAKKAPLSEAGKAAAEKLFAVAERLLAPG-QPNLFGE-WCIADTDLA 172 (214)
T ss_pred CHHHHHHHHHHHHHHHhhhHHHhccCccchhccCCCCCcccHHHHHHHHHHHHHHHHHHhcC-CCEeeCC-ccHHHHHHH
Confidence 5 44555544321 12111 111 1123456678899999999999753 4799996 999999999
Q ss_pred hHHHHHHHHhhhccCCCCCccchhhhccccC
Q 029887 156 PKLYHLQVALEHFKQWTVPESLAHVHGYTKV 186 (186)
Q Consensus 156 ~~l~~~~~~~~~~~~~~~~~~~p~l~~w~~~ 186 (186)
+.+.++.. .+... .|+|.+|++|
T Consensus 173 ~~l~~~~~-----~~~~~---~p~l~~~~~r 195 (214)
T PRK15113 173 LMLNRLVL-----HGDEV---PERLADYATF 195 (214)
T ss_pred HHHHHHHH-----cCCCC---CHHHHHHHHH
Confidence 99887653 12222 1888888764
No 12
>PRK13972 GSH-dependent disulfide bond oxidoreductase; Provisional
Probab=99.96 E-value=3.9e-28 Score=180.90 Aligned_cols=158 Identities=18% Similarity=0.228 Sum_probs=117.0
Q ss_pred CChhHHHHHHHHHhcCCCceeEeccCCC---CchhhhhhCCCCCccEEEe-----CC--eeeeeHHHHHHHHHHhCCCCC
Q 029887 19 DCPFSQRALLTLEEKKVPYKRHLINISD---KPQWFMEISPEGKVPVVKF-----DD--KWVADSDVIVRIIEEKYPEPS 88 (186)
Q Consensus 19 ~sp~~~~vr~~L~~~gi~~~~~~~~~~~---~~~~~~~~~p~~~vP~L~~-----~g--~~l~eS~aI~~yL~~~~~~~~ 88 (186)
.+|+|++|+++|+++|++|+.+.++... +.++|+++||.|+||+|++ +| .+|+||.||++||+++++ .
T Consensus 8 ~~~~~~~v~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~iNP~gkVP~L~~~~~~d~g~~~~L~ES~AI~~YL~~~~~--~ 85 (215)
T PRK13972 8 PTPNGHKITLFLEEAELDYRLIKVDLGKGGQFRPEFLRISPNNKIPAIVDHSPADGGEPLSLFESGAILLYLAEKTG--L 85 (215)
T ss_pred CCCChHHHHHHHHHcCCCcEEEEecCcccccCCHHHHhhCcCCCCCEEEeCCCCCCCCceeEEcHHHHHHHHHHhcC--C
Confidence 3689999999999999999999998754 3578999999999999997 45 479999999999999986 3
Q ss_pred CCCC--hHHHhhccccchH---HHHhh-----c-C--CCC----CchHHHHHHHHHHHHHHHHhhCCCCcccCCCCChhH
Q 029887 89 LTNP--PEFASLGSKIFPS---FVNFL-----K-S--KDP----NDGTEQALLEELKALDEHLKTHGGPFIAGEKVTAVD 151 (186)
Q Consensus 89 l~~~--~~~~~~~~~~~~~---~~~~~-----~-~--~~~----~~~~~~~~~~~l~~le~~L~~~~~~yl~G~~~t~aD 151 (186)
+.|. .+++++..|+... +...+ . . ... .+...+.+.+.+..+|+.|+++ +|++|+++|+||
T Consensus 86 l~p~~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~--~~l~Gd~~t~AD 163 (215)
T PRK13972 86 FLSHETRERAATLQWLFWQVGGLGPMLGQNHHFNHAAPQTIPYAIERYQVETQRLYHVLNKRLENS--PWLGGENYSIAD 163 (215)
T ss_pred CCCCCHHHHHHHHHHHHHHhhccCcceeeeeeeeccCCCCCchHHHHHHHHHHHHHHHHHHHhccC--ccccCCCCCHHH
Confidence 4553 3566666665321 11100 0 0 110 1233456788899999999865 899999999999
Q ss_pred HHhhhHHHHHHHHhhhccCCCCCccchhhhccccC
Q 029887 152 LSLAPKLYHLQVALEHFKQWTVPESLAHVHGYTKV 186 (186)
Q Consensus 152 i~~~~~l~~~~~~~~~~~~~~~~~~~p~l~~w~~~ 186 (186)
|++++++..+.. .... .+.+|+|.+|++|
T Consensus 164 i~l~~~~~~~~~-----~~~~-~~~~P~l~~w~~r 192 (215)
T PRK13972 164 IACWPWVNAWTR-----QRID-LAMYPAVKNWHER 192 (215)
T ss_pred HHHHHHHHHHhh-----cCCc-chhCHHHHHHHHH
Confidence 999987754432 1222 3789999999874
No 13
>KOG0868 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=4.6e-28 Score=168.29 Aligned_cols=167 Identities=26% Similarity=0.392 Sum_probs=129.6
Q ss_pred ccCCCCCCCChhHHHHHHHHHhcCCCceeEeccCCCC----chhhhhhCCCCCccEEEeCCeeeeeHHHHHHHHHHhCCC
Q 029887 11 VGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISDK----PQWFMEISPEGKVPVVKFDDKWVADSDVIVRIIEEKYPE 86 (186)
Q Consensus 11 ~~~~~~~~~sp~~~~vr~~L~~~gi~~~~~~~~~~~~----~~~~~~~~p~~~vP~L~~~g~~l~eS~aI~~yL~~~~~~ 86 (186)
.+-+|.+..|+.++|||++|..+||+|+.+++++-.. ..+|.+.||.++||+|++||.+++||.||++||++.+|+
T Consensus 5 KpiLYSYWrSSCswRVRiALaLK~iDYey~PvnLlk~~~q~~~ef~~iNPm~kVP~L~i~g~tl~eS~AII~YLeEt~P~ 84 (217)
T KOG0868|consen 5 KPILYSYWRSSCSWRVRIALALKGIDYEYKPVNLLKEEDQSDSEFKEINPMEKVPTLVIDGLTLTESLAIIEYLEETYPD 84 (217)
T ss_pred cchhhhhhcccchHHHHHHHHHcCCCcceeehhhhcchhhhhhHHhhcCchhhCCeEEECCEEeehHHHHHHHHHhcCCC
Confidence 4457778899999999999999999999999998542 346999999999999999999999999999999999999
Q ss_pred CCCCCChH--HHhh-------ccccch----HHHHhhcCCCC---CchHHHHHHHHHHHHHHHHhhCCCCcccCCCCChh
Q 029887 87 PSLTNPPE--FASL-------GSKIFP----SFVNFLKSKDP---NDGTEQALLEELKALDEHLKTHGGPFIAGEKVTAV 150 (186)
Q Consensus 87 ~~l~~~~~--~~~~-------~~~~~~----~~~~~~~~~~~---~~~~~~~~~~~l~~le~~L~~~~~~yl~G~~~t~a 150 (186)
+.|+|.+. |+.. .+.+++ .+...+..+.. ..-+...+.+.+..||+.|+++.|.|.+||++|+|
T Consensus 85 ppLLP~d~~KRA~~r~i~~~i~sgIQPlQNl~vl~~l~ek~~~~~~~W~q~~ItkGF~ALEklL~~~aGkycvGDevtiA 164 (217)
T KOG0868|consen 85 PPLLPKDPHKRAKARAISLLIASGIQPLQNLSVLKMLNEKEPGYGDQWAQHFITKGFTALEKLLKSHAGKYCVGDEVTIA 164 (217)
T ss_pred CCCCCcCHHHHHHHHHHHHHHHhCCCcchhhHHHHHhcccccchhhHHHHHHHHHhHHHHHHHHHHccCCcccCceeehh
Confidence 99999763 2221 222221 12223333333 23455667899999999999999999999999999
Q ss_pred HHHhhhHHHHHHHHhhhccCCCCCccchhhhcc
Q 029887 151 DLSLAPKLYHLQVALEHFKQWTVPESLAHVHGY 183 (186)
Q Consensus 151 Di~~~~~l~~~~~~~~~~~~~~~~~~~p~l~~w 183 (186)
|+++.+.++..... .+ ..+.||.+.+.
T Consensus 165 Dl~L~pqv~nA~rf-----~v-dl~PYPti~ri 191 (217)
T KOG0868|consen 165 DLCLPPQVYNANRF-----HV-DLTPYPTITRI 191 (217)
T ss_pred hhccchhhhhhhhc-----cc-cCCcCchHHHH
Confidence 99999998876532 22 23677776654
No 14
>PRK10542 glutathionine S-transferase; Provisional
Probab=99.95 E-value=4.3e-28 Score=178.76 Aligned_cols=159 Identities=18% Similarity=0.295 Sum_probs=119.9
Q ss_pred ChhHHHHHHHHHhcCCCceeEeccCCC----CchhhhhhCCCCCccEEE-eCCeeeeeHHHHHHHHHHhCCCCCCC-CC-
Q 029887 20 CPFSQRALLTLEEKKVPYKRHLINISD----KPQWFMEISPEGKVPVVK-FDDKWVADSDVIVRIIEEKYPEPSLT-NP- 92 (186)
Q Consensus 20 sp~~~~vr~~L~~~gi~~~~~~~~~~~----~~~~~~~~~p~~~vP~L~-~~g~~l~eS~aI~~yL~~~~~~~~l~-~~- 92 (186)
++++++++++|+++|++|+.+.++... .+++|.++||.|+||+|+ ++|.+|+||.+|++||+++++...+. |.
T Consensus 8 ~s~~~~~~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~nP~g~vPvL~~~~g~~l~eS~aI~~YL~~~~~~~~l~~p~~ 87 (201)
T PRK10542 8 GACSLASHITLRESGLDFTLVSVDLAKKRLENGDDYLAINPKGQVPALLLDDGTLLTEGVAIMQYLADSVPDRQLLAPVG 87 (201)
T ss_pred cHHHHHHHHHHHHcCCCceEEEeecccccccCChHHHHhCcCCCCCeEEeCCCcEeecHHHHHHHHHHhCcccccCCCCC
Confidence 347999999999999999999998753 347899999999999998 57899999999999999999877655 32
Q ss_pred -hHHHhhccccc-------hHHHHhhcCCCCC---chHHHHHHHHHHHHHHHHhhCCCCcccCCCCChhHHHhhhHHHHH
Q 029887 93 -PEFASLGSKIF-------PSFVNFLKSKDPN---DGTEQALLEELKALDEHLKTHGGPFIAGEKVTAVDLSLAPKLYHL 161 (186)
Q Consensus 93 -~~~~~~~~~~~-------~~~~~~~~~~~~~---~~~~~~~~~~l~~le~~L~~~~~~yl~G~~~t~aDi~~~~~l~~~ 161 (186)
.+++++..|+. ..+...+...... +...+.+.+.++.+|+.|+.+ +|++|+++|+|||++++++.++
T Consensus 88 ~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~--~~l~G~~~s~ADi~l~~~~~~~ 165 (201)
T PRK10542 88 SLSRYHTIEWLNYIATELHKGFTPLFRPDTPEEYKPTVRAQLEKKFQYVDEALADE--QWICGQRFTIADAYLFTVLRWA 165 (201)
T ss_pred cHHHHHHHHHHHHHHhhhhhhhhhccCCCChHHHHHHHHHHHHHHHHHHHHHhcCC--CeeeCCCCcHHhHHHHHHHHHh
Confidence 24544444433 2222222211111 234567888999999999865 8999999999999999988776
Q ss_pred HHHhhhccCCCCCccchhhhccccC
Q 029887 162 QVALEHFKQWTVPESLAHVHGYTKV 186 (186)
Q Consensus 162 ~~~~~~~~~~~~~~~~p~l~~w~~~ 186 (186)
.. .+.. .+.+|+|.+|+++
T Consensus 166 ~~-----~~~~-~~~~p~l~~w~~~ 184 (201)
T PRK10542 166 YA-----VKLN-LEGLEHIAAYMQR 184 (201)
T ss_pred hc-----cCCC-cccchHHHHHHHH
Confidence 43 2222 3689999999874
No 15
>PRK10357 putative glutathione S-transferase; Provisional
Probab=99.95 E-value=1.9e-27 Score=175.55 Aligned_cols=167 Identities=14% Similarity=0.067 Sum_probs=124.0
Q ss_pred CCCCCCChhHHHHHHHHHhcCCCceeEeccCCCCchhhhhhCCCCCccEEE-eCCeeeeeHHHHHHHHHHhCCCCCCCCC
Q 029887 14 PDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFMEISPEGKVPVVK-FDDKWVADSDVIVRIIEEKYPEPSLTNP 92 (186)
Q Consensus 14 ~~~~~~sp~~~~vr~~L~~~gi~~~~~~~~~~~~~~~~~~~~p~~~vP~L~-~~g~~l~eS~aI~~yL~~~~~~~~l~~~ 92 (186)
++....||++++||++|+++|++|+.+.++...+++++.+.||.|++|+|+ ++|.+++||.+|++||+++++...+.|.
T Consensus 3 Ly~~~~s~~~~~v~~~L~~~gv~ye~~~~~~~~~~~~~~~~nP~g~vP~L~~~~g~~l~eS~aI~~yL~~~~~~~~l~p~ 82 (202)
T PRK10357 3 LIGSYTSPFVRKISILLLEKGITFEFVNELPYNADNGVAQYNPLGKVPALVTEEGECWFDSPIIAEYIELLNVAPAMLPR 82 (202)
T ss_pred eecCCCCchHHHHHHHHHHcCCCCeEEecCCCCCchhhhhcCCccCCCeEEeCCCCeeecHHHHHHHHHHhCCCCCCCCC
Confidence 566678999999999999999999999998776677788899999999998 6789999999999999999987678875
Q ss_pred hH--HHhhccccch---HH---H---H-hhcCC-CCC----chHHHHHHHHHHHHHHHHhhCCCCcccCCCCChhHHHhh
Q 029887 93 PE--FASLGSKIFP---SF---V---N-FLKSK-DPN----DGTEQALLEELKALDEHLKTHGGPFIAGEKVTAVDLSLA 155 (186)
Q Consensus 93 ~~--~~~~~~~~~~---~~---~---~-~~~~~-~~~----~~~~~~~~~~l~~le~~L~~~~~~yl~G~~~t~aDi~~~ 155 (186)
+. ++++..++.. .+ . . ..... ... +...+.+.+.++.+|+.|++. + ++|+++|+||++++
T Consensus 83 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~~--~-l~Gd~~t~ADi~l~ 159 (202)
T PRK10357 83 DPLAALRVRQLEALADGIMDAALVSVREQARPAAQQSEDELLRQREKINRSLDALEGYLVDG--T-LKTDTVNLATIAIA 159 (202)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHHHHHHHHHhhccC--c-ccCCCcCHHHHHHH
Confidence 53 3333332211 00 0 0 01111 111 234567888899999999754 6 99999999999999
Q ss_pred hHHHHHHHHhhhccCCCCCccchhhhccccC
Q 029887 156 PKLYHLQVALEHFKQWTVPESLAHVHGYTKV 186 (186)
Q Consensus 156 ~~l~~~~~~~~~~~~~~~~~~~p~l~~w~~~ 186 (186)
+.+.++.... .+.....++|+|++|++|
T Consensus 160 ~~l~~~~~~~---~~~~~~~~~p~l~~~~~~ 187 (202)
T PRK10357 160 CAVGYLNFRR---VAPGWCVDRPHLVKLVEN 187 (202)
T ss_pred HHHHHHHhcc---cCcchhhcChHHHHHHHH
Confidence 9988765421 111223678999999875
No 16
>PTZ00057 glutathione s-transferase; Provisional
Probab=99.95 E-value=2.4e-27 Score=175.48 Aligned_cols=160 Identities=14% Similarity=0.180 Sum_probs=115.4
Q ss_pred CCCChhHHHHHHHHHhcCCCceeEeccCCCCchhhh--------hhCCCCCccEEEeCCeeeeeHHHHHHHHHHhCCCCC
Q 029887 17 LGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFM--------EISPEGKVPVVKFDDKWVADSDVIVRIIEEKYPEPS 88 (186)
Q Consensus 17 ~~~sp~~~~vr~~L~~~gi~~~~~~~~~~~~~~~~~--------~~~p~~~vP~L~~~g~~l~eS~aI~~yL~~~~~~~~ 88 (186)
+..++++.++|++|+++|++|+.+.++. ..+ ++. +.||+|++|+|+++|.+|+||.||++||+++++.
T Consensus 10 ~~~~~~~~~vrl~L~~~gi~ye~~~~~~-~~~-~~~~~~~~~~~~~nP~g~vP~L~~~~~~l~eS~AI~~YLa~~~~~-- 85 (205)
T PTZ00057 10 FDARGKAELIRLIFAYLGIEYTDKRFGE-NGD-AFIEFKNFKKEKDTPFEQVPILEMDNIIFAQSQAIVRYLSKKYKI-- 85 (205)
T ss_pred cCCCcchHHHHHHHHHcCCCeEEEeccc-cch-HHHHHHhccccCCCCCCCCCEEEECCEEEecHHHHHHHHHHHcCC--
Confidence 3468889999999999999999997753 122 232 4799999999999999999999999999999974
Q ss_pred CCCChHHHhhccccchHH-HHhh---c-----CCCCCchHHHHHHHHHHHHHHHHhhCCCCcccCCCCChhHHHhhhHHH
Q 029887 89 LTNPPEFASLGSKIFPSF-VNFL---K-----SKDPNDGTEQALLEELKALDEHLKTHGGPFIAGEKVTAVDLSLAPKLY 159 (186)
Q Consensus 89 l~~~~~~~~~~~~~~~~~-~~~~---~-----~~~~~~~~~~~~~~~l~~le~~L~~~~~~yl~G~~~t~aDi~~~~~l~ 159 (186)
.+.++.++...|+.... ..+. . .....+...+.+.+.++.||+.|++++|+|++|+++|+||+++++++.
T Consensus 86 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~Gd~~T~AD~~l~~~~~ 164 (205)
T PTZ00057 86 -CGESELNEFYADMIFCGVQDIHYKFNNTNLFKQNETTFLNEELPKWSGYFENILKKNHCNYFVGDNLTYADLAVFNLYD 164 (205)
T ss_pred -CCCCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeeeCCcccHHHHHHHHHHH
Confidence 23444444333332111 1110 0 011112344677888999999998765689999999999999999888
Q ss_pred HHHHHhhhccCCCCCccchhhhccccC
Q 029887 160 HLQVALEHFKQWTVPESLAHVHGYTKV 186 (186)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~p~l~~w~~~ 186 (186)
++.... +. ..+.+|+|.+|++|
T Consensus 165 ~~~~~~----~~-~l~~~P~l~~~~~r 186 (205)
T PTZ00057 165 DIETKY----PN-SLKNFPLLKAHNEF 186 (205)
T ss_pred HHHHhC----hh-hhccChhHHHHHHH
Confidence 765321 11 23788999999764
No 17
>PRK11752 putative S-transferase; Provisional
Probab=99.94 E-value=1.1e-26 Score=177.91 Aligned_cols=164 Identities=24% Similarity=0.319 Sum_probs=120.1
Q ss_pred CChhHHHHHHHHHhc------CCCceeEeccCCC---CchhhhhhCCCCCccEEEeC----CeeeeeHHHHHHHHHHhCC
Q 029887 19 DCPFSQRALLTLEEK------KVPYKRHLINISD---KPQWFMEISPEGKVPVVKFD----DKWVADSDVIVRIIEEKYP 85 (186)
Q Consensus 19 ~sp~~~~vr~~L~~~------gi~~~~~~~~~~~---~~~~~~~~~p~~~vP~L~~~----g~~l~eS~aI~~yL~~~~~ 85 (186)
.||+|+||+++|+++ |++|+.+.++... .+++|+++||.|+||+|+++ |.+|+||.||++||+++++
T Consensus 51 ~s~~~~rV~i~L~e~~~~~~~gl~ye~~~v~~~~~~~~~~e~~~iNP~GkVP~Lv~~dg~~~~~L~ES~AIl~YL~~~~~ 130 (264)
T PRK11752 51 GTPNGQKVTIMLEELLALGVKGAEYDAWLIRIGEGDQFSSGFVEINPNSKIPALLDRSGNPPIRVFESGAILLYLAEKFG 130 (264)
T ss_pred CCCchHHHHHHHHHHHhccCCCCceEEEEecCccccccCHHHHhhCCCCCCCEEEeCCCCCCeEEEcHHHHHHHHHHhcC
Confidence 599999999999997 8999999998754 46789999999999999974 3699999999999999997
Q ss_pred CCCCCCCh--HHHhhccccchH----------HHHhh-cCCCCC----chHHHHHHHHHHHHHHHHhhCCCCcccCCCCC
Q 029887 86 EPSLTNPP--EFASLGSKIFPS----------FVNFL-KSKDPN----DGTEQALLEELKALDEHLKTHGGPFIAGEKVT 148 (186)
Q Consensus 86 ~~~l~~~~--~~~~~~~~~~~~----------~~~~~-~~~~~~----~~~~~~~~~~l~~le~~L~~~~~~yl~G~~~t 148 (186)
++.|.+ +++++..|+... +.... ..+... +....++.+.|+.+|+.|+++ +||+|+++|
T Consensus 131 --~L~P~~~~era~v~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~le~~L~~~--~fl~Gd~~T 206 (264)
T PRK11752 131 --AFLPKDLAARTETLNWLFWQQGSAPFLGGGFGHFYAYAPEKIEYAINRFTMEAKRQLDVLDKQLAEH--EYIAGDEYT 206 (264)
T ss_pred --CcCCCCHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHhccC--CCCCCCccC
Confidence 367644 455565554321 00111 111111 223356788899999999865 899999999
Q ss_pred hhHHHhhhHHHHHHHHhh-hccCCCCCccchhhhccccC
Q 029887 149 AVDLSLAPKLYHLQVALE-HFKQWTVPESLAHVHGYTKV 186 (186)
Q Consensus 149 ~aDi~~~~~l~~~~~~~~-~~~~~~~~~~~p~l~~w~~~ 186 (186)
+|||++++++.++..... ...+....+.+|+|++|+++
T Consensus 207 lADi~l~~~l~~l~~~~~~~~~~~~~~~~~P~L~~w~~r 245 (264)
T PRK11752 207 IADIAIWPWYGNLVLGNLYDAAEFLDVGSYKHVQRWAKE 245 (264)
T ss_pred HHHHHHHHHHHHHhhccccccccccCcccCHHHHHHHHH
Confidence 999999998877643110 01112224789999999874
No 18
>PRK10387 glutaredoxin 2; Provisional
Probab=99.94 E-value=2.4e-26 Score=170.55 Aligned_cols=161 Identities=21% Similarity=0.297 Sum_probs=116.7
Q ss_pred CCCCCCChhHHHHHHHHHhcCCCceeEeccCCCCchhhhhhCCCCCccEEE-eCCeeeeeHHHHHHHHHHhCCCCCCCCC
Q 029887 14 PDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFMEISPEGKVPVVK-FDDKWVADSDVIVRIIEEKYPEPSLTNP 92 (186)
Q Consensus 14 ~~~~~~sp~~~~vr~~L~~~gi~~~~~~~~~~~~~~~~~~~~p~~~vP~L~-~~g~~l~eS~aI~~yL~~~~~~~~l~~~ 92 (186)
++.+..||+|+|+|++|+++|++|+.+.++..+.. ...+.||.++||+|+ ++|..++||.+|++||+++|+...+. .
T Consensus 3 Ly~~~~sp~~~kv~~~L~~~gi~y~~~~~~~~~~~-~~~~~~p~~~VPvL~~~~g~~l~eS~aI~~yL~~~~~~~~l~-~ 80 (210)
T PRK10387 3 LYIYDHCPFCVKARMIFGLKNIPVELIVLANDDEA-TPIRMIGQKQVPILQKDDGSYMPESLDIVHYIDELDGKPLLT-G 80 (210)
T ss_pred EEeCCCCchHHHHHHHHHHcCCCeEEEEcCCCchh-hHHHhcCCcccceEEecCCeEecCHHHHHHHHHHhCCCccCC-C
Confidence 55667899999999999999999999988654422 235688999999995 78899999999999999999875443 2
Q ss_pred hHHHhhccccchH-------HHHhhcCC---C--------------------------CCchHHHHHHHHHHHHHHHHhh
Q 029887 93 PEFASLGSKIFPS-------FVNFLKSK---D--------------------------PNDGTEQALLEELKALDEHLKT 136 (186)
Q Consensus 93 ~~~~~~~~~~~~~-------~~~~~~~~---~--------------------------~~~~~~~~~~~~l~~le~~L~~ 136 (186)
++++.+..|+... +...+... . ..+...+.+.+.|+.+|+.|++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~ 160 (210)
T PRK10387 81 KRSPAIEEWLRKVFGYLNKLLYPRFAKADLPEFATPSARQYFIDKKEASIGDFDALLAHTPGLIKEINADLRALDPLIVK 160 (210)
T ss_pred cccHHHHHHHHHHHHHhhcchhcccccCCCcccCCHHHHHHHHHhHHhccCCHHHHHhcCHHHHHHHHHHHHHHHHHhcC
Confidence 3444444443211 00000000 0 0123456778889999999862
Q ss_pred CCCCcccCCCCChhHHHhhhHHHHHHHHhhhccCCCCCccchhhhccccC
Q 029887 137 HGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYTKV 186 (186)
Q Consensus 137 ~~~~yl~G~~~t~aDi~~~~~l~~~~~~~~~~~~~~~~~~~p~l~~w~~~ 186 (186)
+|++|+++|+||+++++++.++... .+. ..+|+|.+|++|
T Consensus 161 ---~~l~G~~~s~ADi~l~~~l~~~~~~----~~~---~~~p~l~~w~~r 200 (210)
T PRK10387 161 ---PNAVNGELSTDDIHLFPILRNLTLV----KGI---EWPPRVADYRDN 200 (210)
T ss_pred ---ccccCCCCCHHHHHHHHHHhcceee----cCC---CCCHHHHHHHHH
Confidence 8999999999999999998887642 222 235999999875
No 19
>TIGR02182 GRXB Glutaredoxin, GrxB family. This model includes the highly abundant E. coli GrxB (Grx2) glutaredoxin which is notably longer than either GrxA or GrxC. Unlike the other two E. coli glutaredoxins, GrxB appears to be unable to reduce ribonucleotide reductase, and may have more to do with resistance to redox stress.
Probab=99.93 E-value=5.6e-25 Score=163.19 Aligned_cols=160 Identities=20% Similarity=0.292 Sum_probs=114.1
Q ss_pred CCCCCCChhHHHHHHHHHhcCCCceeEeccCCCCchhhhhhCCCCCccEEE-eCCeeeeeHHHHHHHHHHhCCCCCCCCC
Q 029887 14 PDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFMEISPEGKVPVVK-FDDKWVADSDVIVRIIEEKYPEPSLTNP 92 (186)
Q Consensus 14 ~~~~~~sp~~~~vr~~L~~~gi~~~~~~~~~~~~~~~~~~~~p~~~vP~L~-~~g~~l~eS~aI~~yL~~~~~~~~l~~~ 92 (186)
+|.+..||||+|||++|.++|++|+.+.+...+. ....+.||.|++|+|+ ++|..++||.+|++||+++|+.+.+ ++
T Consensus 2 Ly~~~~sp~~~kvr~~L~~~gl~~e~~~~~~~~~-~~~~~~np~g~vP~l~~~~g~~l~es~~I~~yL~~~~~~~~~-~~ 79 (209)
T TIGR02182 2 LYIYDHCPFCVRARMIFGLKNIPVEKHVLLNDDE-ETPIRMIGAKQVPILQKDDGRAMPESLDIVAYFDKLDGEPLL-TG 79 (209)
T ss_pred eecCCCCChHHHHHHHHHHcCCCeEEEECCCCcc-hhHHHhcCCCCcceEEeeCCeEeccHHHHHHHHHHhCCCccC-CC
Confidence 4667789999999999999999999987755432 2347889999999998 7889999999999999999986433 33
Q ss_pred hHHHhhccccch---HHHHhh----cC------------------C-----------CCCchHHHHHHHHHHHHHHHHhh
Q 029887 93 PEFASLGSKIFP---SFVNFL----KS------------------K-----------DPNDGTEQALLEELKALDEHLKT 136 (186)
Q Consensus 93 ~~~~~~~~~~~~---~~~~~~----~~------------------~-----------~~~~~~~~~~~~~l~~le~~L~~ 136 (186)
..+.++..|+.. .+...+ .. + ...+...+.+.+.|+.+|+.|++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~le~~L~~ 159 (209)
T TIGR02182 80 KVSPEIEAWLRKVTGYANKLLLPRFAKSDLPEFATQSARKYFTDKKEASAGNFSALLNHTPGLLEEINADLEELDKLIDG 159 (209)
T ss_pred CChHHHHHHHHHHHHHhhhhhccccccCCCcccCCHHHHHHHHHHHHHhcCCHHHHHccCHHHHHHHHHHHHHHHHHHhC
Confidence 233333333311 111000 00 0 00124456788889999999987
Q ss_pred CCCCcccCCCCChhHHHhhhHHHHHHHHhhhccCCCCCccch-hhhccccC
Q 029887 137 HGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLA-HVHGYTKV 186 (186)
Q Consensus 137 ~~~~yl~G~~~t~aDi~~~~~l~~~~~~~~~~~~~~~~~~~p-~l~~w~~~ 186 (186)
+ +|++| ++|+||+++++.+.++... .+ .++| +|.+|++|
T Consensus 160 ~--~~l~g-~~TiADi~l~~~l~~~~~~----~~----~~~p~~l~~w~~R 199 (209)
T TIGR02182 160 P--NAVNG-ELSEDDILVFPLLRNLTLV----AG----INWPSRVADYLDN 199 (209)
T ss_pred c--cccCC-CCCHHHHHHHHHhcCeeee----cC----CCCChHHHHHHHH
Confidence 6 89865 6999999999998776531 12 1356 99999875
No 20
>KOG0867 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=1.5e-24 Score=162.44 Aligned_cols=168 Identities=23% Similarity=0.232 Sum_probs=129.6
Q ss_pred CCCCCCChhHHHHHHHHHhcCCCceeEeccCCC---CchhhhhhCCCCCccEEEeCCeeeeeHHHHHHHHHHhCC-CCC-
Q 029887 14 PDILGDCPFSQRALLTLEEKKVPYKRHLINISD---KPQWFMEISPEGKVPVVKFDDKWVADSDVIVRIIEEKYP-EPS- 88 (186)
Q Consensus 14 ~~~~~~sp~~~~vr~~L~~~gi~~~~~~~~~~~---~~~~~~~~~p~~~vP~L~~~g~~l~eS~aI~~yL~~~~~-~~~- 88 (186)
+|....||.++++.+++.++|++|+.+.++... .+++|+++||.|+||+|+|+|..+.||.||+.||.++|. .++
T Consensus 5 ly~~~~s~~~r~vl~~~~~~~l~~e~~~v~~~~ge~~~pefl~~nP~~kVP~l~d~~~~l~eS~AI~~Yl~~ky~~~~~~ 84 (226)
T KOG0867|consen 5 LYGHLGSPPARAVLIAAKELGLEVELKPVDLVKGEQKSPEFLKLNPLGKVPALEDGGLTLWESHAILRYLAEKYGPLGGI 84 (226)
T ss_pred EeecCCCcchHHHHHHHHHcCCceeEEEeeccccccCCHHHHhcCcCCCCCeEecCCeEEeeHHHHHHHHHHHcCCCCcc
Confidence 444457889999999999999999999887654 688899999999999999999999999999999999997 334
Q ss_pred CCCCh--HHHhhccccchHHH---------Hh----hc----CCCCCchHHHHHHHHHHHHHHHHhhCCCCcccCCCCCh
Q 029887 89 LTNPP--EFASLGSKIFPSFV---------NF----LK----SKDPNDGTEQALLEELKALDEHLKTHGGPFIAGEKVTA 149 (186)
Q Consensus 89 l~~~~--~~~~~~~~~~~~~~---------~~----~~----~~~~~~~~~~~~~~~l~~le~~L~~~~~~yl~G~~~t~ 149 (186)
+.|.+ +++.+..|++.... .. .. .....+.....+.+.++.+|..|.++ .|++|+++|+
T Consensus 85 l~p~~~~~ra~v~~~l~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~~--~yl~g~~~tl 162 (226)
T KOG0867|consen 85 LLPKDLKERAIVDQWLEFENGVLDPVTFERPILAPLLVGLPLNPTAVKELEAKLRKALDNLERFLKTQ--VYLAGDQLTL 162 (226)
T ss_pred cCCcCHHHHHHHHHHHHhhhcccccccccceeeecceecccCcchhhHHHHHHHHHHHHHHHHHHccC--CcccCCcccH
Confidence 67755 34445445421111 10 11 11223566788999999999999986 9999999999
Q ss_pred hHHHhhhHHHHHHHHhhhccCCCCCccchhhhccccC
Q 029887 150 VDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYTKV 186 (186)
Q Consensus 150 aDi~~~~~l~~~~~~~~~~~~~~~~~~~p~l~~w~~~ 186 (186)
||+.+.+.+..+... .. .....+++|++.+|+++
T Consensus 163 ADl~~~~~~~~~~~~--~~-~~~~~~~~p~v~~W~~~ 196 (226)
T KOG0867|consen 163 ADLSLASTLSQFQGK--FA-TEKDFEKYPKVARWYER 196 (226)
T ss_pred HHHHHhhHHHHHhHh--hh-hhhhhhhChHHHHHHHH
Confidence 999999998887421 11 22245899999999874
No 21
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=99.92 E-value=1.2e-24 Score=139.01 Aligned_cols=85 Identities=26% Similarity=0.525 Sum_probs=80.4
Q ss_pred ceeehhhhcccCCCCCCCChhHHHHHHHHHhcCCCceeEeccCCCCchhhhhhCCCCCccEEEeCCeeeeeHHHHHHHHH
Q 029887 2 AVEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFMEISPEGKVPVVKFDDKWVADSDVIVRIIE 81 (186)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~sp~~~~vr~~L~~~gi~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~g~~l~eS~aI~~yL~ 81 (186)
++|+|+|+++.... .+.||||+|+||+|+++|++|+.+.+++.+++++|.+.||.|++|+|+++|.+++||.+|++||+
T Consensus 5 ~~el~vka~~~~~~-~g~cpf~~rvrl~L~eKgi~ye~~~vd~~~~p~~~~~~nP~g~vPvL~~~~~~i~eS~~I~eYLd 83 (91)
T cd03061 5 EIELFVKASSDGES-IGNCPFCQRLFMVLWLKGVVFNVTTVDMKRKPEDLKDLAPGTQPPFLLYNGEVKTDNNKIEEFLE 83 (91)
T ss_pred cEEEEEEeccCCCC-CCCChhHHHHHHHHHHCCCceEEEEeCCCCCCHHHHHhCCCCCCCEEEECCEEecCHHHHHHHHH
Confidence 58999999987666 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCC
Q 029887 82 EKYPEP 87 (186)
Q Consensus 82 ~~~~~~ 87 (186)
++++..
T Consensus 84 e~~~~~ 89 (91)
T cd03061 84 ETLCPP 89 (91)
T ss_pred HHccCC
Confidence 998764
No 22
>KOG1695 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=1e-22 Score=148.53 Aligned_cols=151 Identities=21% Similarity=0.247 Sum_probs=108.7
Q ss_pred ceeehhhhcccCCCCCCCChhHHHHHHHHHhcCCCceeEeccCCC-CchhhhhhCCCCCccEEEeCCeeeeeHHHHHHHH
Q 029887 2 AVEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISD-KPQWFMEISPEGKVPVVKFDDKWVADSDVIVRII 80 (186)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~sp~~~~vr~~L~~~gi~~~~~~~~~~~-~~~~~~~~~p~~~vP~L~~~g~~l~eS~aI~~yL 80 (186)
+++|+|... ..++..+|++++.+|++||++++...+ |.. .+...|+|++|+|..||..+.||.||++||
T Consensus 3 ~ykL~Yf~~---------RG~ae~iR~lf~~a~v~fEd~r~~~~~~w~~-~K~~~pfgqlP~l~vDg~~i~QS~AI~RyL 72 (206)
T KOG1695|consen 3 PYKLTYFNI---------RGLAEPIRLLFAYAGVSFEDKRITMEDAWEE-LKDKMPFGQLPVLEVDGKKLVQSRAILRYL 72 (206)
T ss_pred ceEEEecCc---------chhHHHHHHHHHhcCCCcceeeeccccchhh-hcccCCCCCCCEEeECCEeeccHHHHHHHH
Confidence 456666654 445999999999999999999999887 443 566689999999999999999999999999
Q ss_pred HHhCCCCCCCCChHHHh---h---ccccchH-HHHhhcCCCC---Cc----hHHHHHHHHHHHHHHHHhhCCCCcccCCC
Q 029887 81 EEKYPEPSLTNPPEFAS---L---GSKIFPS-FVNFLKSKDP---ND----GTEQALLEELKALDEHLKTHGGPFIAGEK 146 (186)
Q Consensus 81 ~~~~~~~~l~~~~~~~~---~---~~~~~~~-~~~~~~~~~~---~~----~~~~~~~~~l~~le~~L~~~~~~yl~G~~ 146 (186)
+++|+..+-.+ .+.+. + ..++... +......... .+ .......+.+..+++.|.++++.|++||+
T Consensus 73 Ark~gl~Gkt~-~E~a~vD~i~d~~~D~~~~~~~~~~~~~~~g~~~~~~~~~~~Pa~~~~~~~~~~~L~~~~sgflvGd~ 151 (206)
T KOG1695|consen 73 ARKFGLAGKTE-EEEAWVDMIVDQFKDFRWEIFRQPYTAPEAGKSEEELDKLYLPAKPKYFKILEKILKKNKSGFLVGDK 151 (206)
T ss_pred HHHhCcCCCCH-HHHHHHHHHHHhhhhHHHHHHHHhhhhhhhccchhhhhhhhccchHHHHHHHHHHHHhCCCCeeecCc
Confidence 99999543222 12211 1 2222222 1111111111 11 12235567788999999977778999999
Q ss_pred CChhHHHhhhHHHHHHH
Q 029887 147 VTAVDLSLAPKLYHLQV 163 (186)
Q Consensus 147 ~t~aDi~~~~~l~~~~~ 163 (186)
+|+||+.++..+..+..
T Consensus 152 lT~aDl~i~e~l~~l~~ 168 (206)
T KOG1695|consen 152 LTWADLVIAEHLDTLEE 168 (206)
T ss_pred ccHHHHHHHHHHHHHHH
Confidence 99999999999888776
No 23
>KOG4420 consensus Uncharacterized conserved protein (Ganglioside-induced differentiation associated protein 1, GDAP1) [Function unknown]
Probab=99.86 E-value=8.6e-22 Score=144.62 Aligned_cols=176 Identities=20% Similarity=0.296 Sum_probs=125.8
Q ss_pred cccCCCCCCCChhHHHHHHHHHhcCCCceeEeccCCC---CchhhhhhCCCCCccEEEeCCeeeeeHHHHHHHHHHhCCC
Q 029887 10 AVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISD---KPQWFMEISPEGKVPVVKFDDKWVADSDVIVRIIEEKYPE 86 (186)
Q Consensus 10 ~~~~~~~~~~sp~~~~vr~~L~~~gi~~~~~~~~~~~---~~~~~~~~~p~~~vP~L~~~g~~l~eS~aI~~yL~~~~~~ 86 (186)
.++-+++.+.|-.+||||+++.++||+|+...|++.. .++||..+||.|.||||++++.+|.++.-|+.|++++|-+
T Consensus 25 e~~vLyhhpysf~sQkVrlvi~EK~id~~~y~V~l~~geh~epwFmrlNp~gevPVl~~g~~II~d~tqIIdYvErtf~g 104 (325)
T KOG4420|consen 25 ESLVLYHHPYSFSSQKVRLVIAEKGIDCEEYDVSLPQGEHKEPWFMRLNPGGEVPVLIHGDNIISDYTQIIDYVERTFTG 104 (325)
T ss_pred hcceeeecCcccccceeeeehhhcccccceeeccCccccccCchheecCCCCCCceEecCCeecccHHHHHHHHHHhhcc
Confidence 3355777788888999999999999999999999875 6899999999999999999999999999999999998876
Q ss_pred C-CCCCChH---------HHhh------ccc-----cchHH---------H--------------HhhcC----------
Q 029887 87 P-SLTNPPE---------FASL------GSK-----IFPSF---------V--------------NFLKS---------- 112 (186)
Q Consensus 87 ~-~l~~~~~---------~~~~------~~~-----~~~~~---------~--------------~~~~~---------- 112 (186)
. .|.|..+ .+.+ ..+ +++.+ . .....
T Consensus 105 er~l~pe~~S~~~d~~l~~e~~l~~lpm~~~t~g~~lh~eL~~~s~iP~~~~iR~~~~k~~~~v~~l~~~e~pdla~ay~ 184 (325)
T KOG4420|consen 105 ERVLMPEVGSLQHDRVLQYEELLDALPMDAYTHGCILHPELTTDSMIPKYAEIRRHLAKATTDVMKLDHEEEPDLAEAYL 184 (325)
T ss_pred cccccccccccccHHHHHHHHHHHhcCcchhhccccccchhhccccCcccHHHHHHHHHHHHHHHHHHhhcCchhhHHHH
Confidence 5 4555321 1100 000 01000 0 00000
Q ss_pred ------------CCCC---chHHHHHHHHHHHHHHHHhhC--CCCcccCCCCChhHHHhhhHHHHHHHHhhhccCCCCCc
Q 029887 113 ------------KDPN---DGTEQALLEELKALDEHLKTH--GGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPE 175 (186)
Q Consensus 113 ------------~~~~---~~~~~~~~~~l~~le~~L~~~--~~~yl~G~~~t~aDi~~~~~l~~~~~~~~~~~~~~~~~ 175 (186)
.+.. .+....+...|+..|..|..+ ...||+|+.+|+||+.+.+.|.++....-...-|.. .
T Consensus 185 akqkkl~~kl~~hdd~s~lkkild~l~~~Ld~VEteLe~r~~~~~wL~G~efslADVsLg~~LhRL~~Lg~e~~yw~~-g 263 (325)
T KOG4420|consen 185 AKQKKLMAKLLEHDDVSYLKKILDELAMVLDQVETELEKRKLCELWLCGCEFSLADVSLGATLHRLKFLGLEKKYWED-G 263 (325)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhhccccceeeccccchHHHHHHHHHHHHHHHcccHHHhccc-C
Confidence 0000 122345566677888888863 148999999999999999999999876433333322 5
Q ss_pred cchhhhccccC
Q 029887 176 SLAHVHGYTKV 186 (186)
Q Consensus 176 ~~p~l~~w~~~ 186 (186)
..|+|.+|+.|
T Consensus 264 srpnle~Yf~r 274 (325)
T KOG4420|consen 264 SRPNLESYFER 274 (325)
T ss_pred CCccHHHHHHH
Confidence 78999999864
No 24
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=99.83 E-value=1.8e-20 Score=116.89 Aligned_cols=73 Identities=37% Similarity=0.656 Sum_probs=68.7
Q ss_pred CCCCCChhHHHHHHHHHhcCCCceeEeccCCCCchhhhhhCCCCCccEEEeCCeeeeeHHHHHHHHHHhCCCC
Q 029887 15 DILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFMEISPEGKVPVVKFDDKWVADSDVIVRIIEEKYPEP 87 (186)
Q Consensus 15 ~~~~~sp~~~~vr~~L~~~gi~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~g~~l~eS~aI~~yL~~~~~~~ 87 (186)
+++..||||+|+|++|+++||+|+.+.++..++.+++.+.+|.+++|+|+++|.+++||.+|++||+++|+..
T Consensus 2 y~~~~Sp~~~kv~~~l~~~~i~~~~~~v~~~~~~~~~~~~~p~~~vPvL~~~g~~l~dS~~I~~yL~~~~~~~ 74 (75)
T PF13417_consen 2 YGFPGSPYSQKVRLALEEKGIPYELVPVDPEEKRPEFLKLNPKGKVPVLVDDGEVLTDSAAIIEYLEERYPGP 74 (75)
T ss_dssp EEETTSHHHHHHHHHHHHHTEEEEEEEEBTTSTSHHHHHHSTTSBSSEEEETTEEEESHHHHHHHHHHHSTSS
T ss_pred CCcCCChHHHHHHHHHHHcCCeEEEeccCcccchhHHHhhcccccceEEEECCEEEeCHHHHHHHHHHHcCCC
Confidence 4567999999999999999999999999988888899999999999999999999999999999999999864
No 25
>PLN02907 glutamate-tRNA ligase
Probab=99.82 E-value=1.4e-19 Score=153.86 Aligned_cols=150 Identities=12% Similarity=0.176 Sum_probs=112.5
Q ss_pred CceeehhhhcccCCCCCCCChhHHHHHHHHHhcCCCceeEeccCCCCchhhhhhCCCCCccEEEe-CCeeeeeHHHHHHH
Q 029887 1 MAVEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFMEISPEGKVPVVKF-DDKWVADSDVIVRI 79 (186)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~sp~~~~vr~~L~~~gi~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~-~g~~l~eS~aI~~y 79 (186)
|+++||+..+ +.+.++.++|++.|++|+.+. .+|.|++|+|++ +|..|+||.||++|
T Consensus 1 ~~~kLy~~~~----------S~~~~v~~~L~~lgv~~e~~~------------~~p~GkVPvLv~ddG~~L~ES~AIl~Y 58 (722)
T PLN02907 1 MEAKLSFPPD----------SPPLAVIAAAKVAGVPLTIDP------------SLKSGSAPTLLFSSGEKLTGTNVLLRY 58 (722)
T ss_pred CeEEEEECCC----------CChHHHHHHHHHcCCCcEEee------------cCCCCCCcEEEECCCCEEECHHHHHHH
Confidence 6677776632 235679999999999999874 268999999995 78999999999999
Q ss_pred HHHhCCCCCCCCCh--HHHhhccccchHHHHhhcCCCCCchHHHHHHHHHHHHHHHHhhCCCCcccCCCCChhHHHhhhH
Q 029887 80 IEEKYPEPSLTNPP--EFASLGSKIFPSFVNFLKSKDPNDGTEQALLEELKALDEHLKTHGGPFIAGEKVTAVDLSLAPK 157 (186)
Q Consensus 80 L~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~yl~G~~~t~aDi~~~~~ 157 (186)
|++.++...|.|.+ +++++..|+... .... ....+.+.+..||++|+.+ +||+|+++|+|||++++.
T Consensus 59 La~~~p~~~L~p~d~~erAqV~qWL~~~--~~~~-------~~~~l~~~L~~LE~~L~~r--tYLvGd~lTLADIaL~~~ 127 (722)
T PLN02907 59 IARSASLPGFYGQDAFESSQVDEWLDYA--PTFS-------SGSEFENACEYVDGYLASR--TFLVGYSLTIADIAIWSG 127 (722)
T ss_pred HHHhCCCcCCCCCCHHHHHHHHHHHHHH--hhcc-------cHHHHHHHHHHHHHHhccC--CeecCCCCCHHHHHHHHH
Confidence 99999877787755 456666776422 1111 1135677899999999876 899999999999999988
Q ss_pred HHHHHHHhhhccCCCCCccchhhhccccC
Q 029887 158 LYHLQVALEHFKQWTVPESLAHVHGYTKV 186 (186)
Q Consensus 158 l~~~~~~~~~~~~~~~~~~~p~l~~w~~~ 186 (186)
+...... .......+.+|+|.+|+++
T Consensus 128 L~~~~~~---~~~~~~~~~yPnL~RW~er 153 (722)
T PLN02907 128 LAGSGQR---WESLRKSKKYQNLVRWFNS 153 (722)
T ss_pred HHhhhhh---hhcccccccCHHHHHHHHH
Confidence 7655211 1111224789999999864
No 26
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=99.78 E-value=9.8e-19 Score=108.38 Aligned_cols=71 Identities=24% Similarity=0.333 Sum_probs=65.5
Q ss_pred CCCCCCChhHHHHHHHHHhcCCCceeEeccCCCCchhhhhhCCCCCccEEEeCCeeeeeHHHHHHHHHHhC
Q 029887 14 PDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFMEISPEGKVPVVKFDDKWVADSDVIVRIIEEKY 84 (186)
Q Consensus 14 ~~~~~~sp~~~~vr~~L~~~gi~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~g~~l~eS~aI~~yL~~~~ 84 (186)
++....||+|++++++|+++|++|+.+.++...+.+++++.||.|++|+|+++|..++||.+|++||+++|
T Consensus 3 ly~~~~~~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~~~~ 73 (73)
T cd03059 3 LYSGPDDVYSHRVRIVLAEKGVSVEIIDVDPDNPPEDLAELNPYGTVPTLVDRDLVLYESRIIMEYLDERF 73 (73)
T ss_pred EEECCCChhHHHHHHHHHHcCCccEEEEcCCCCCCHHHHhhCCCCCCCEEEECCEEEEcHHHHHHHHHhhC
Confidence 44556899999999999999999999999988778889999999999999999999999999999999875
No 27
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=99.77 E-value=1.3e-18 Score=107.33 Aligned_cols=67 Identities=24% Similarity=0.409 Sum_probs=62.1
Q ss_pred CCCCCCChhHHHHHHHHHhcCCCceeEeccCCCCchhhhhhCCCCCccEEEeC-CeeeeeHHHHHHHH
Q 029887 14 PDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFMEISPEGKVPVVKFD-DKWVADSDVIVRII 80 (186)
Q Consensus 14 ~~~~~~sp~~~~vr~~L~~~gi~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~-g~~l~eS~aI~~yL 80 (186)
++.+..||||+|++++|+++|++|+.+.++..++++++.+.||.|++|+|+++ |..++||.+|++|+
T Consensus 3 ly~~~~~p~~~rv~~~L~~~gl~~e~~~v~~~~~~~~~~~~np~~~vP~L~~~~g~~l~eS~aI~~y~ 70 (71)
T cd03060 3 LYSFRRCPYAMRARMALLLAGITVELREVELKNKPAEMLAASPKGTVPVLVLGNGTVIEESLDIMRWA 70 (71)
T ss_pred EEecCCCcHHHHHHHHHHHcCCCcEEEEeCCCCCCHHHHHHCCCCCCCEEEECCCcEEecHHHHHHhh
Confidence 45677899999999999999999999999988778899999999999999985 89999999999996
No 28
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=99.77 E-value=1.4e-18 Score=107.67 Aligned_cols=68 Identities=25% Similarity=0.417 Sum_probs=61.0
Q ss_pred CCCCCCChhHHHHHHHHHhcCCCceeEeccCCC---CchhhhhhCCCCCccEEEeCCeeeeeHHHHHHHHH
Q 029887 14 PDILGDCPFSQRALLTLEEKKVPYKRHLINISD---KPQWFMEISPEGKVPVVKFDDKWVADSDVIVRIIE 81 (186)
Q Consensus 14 ~~~~~~sp~~~~vr~~L~~~gi~~~~~~~~~~~---~~~~~~~~~p~~~vP~L~~~g~~l~eS~aI~~yL~ 81 (186)
++.+..||+|+++|++|+++|++|+.+.++... ++++|.+.||.|++|+|+++|..++||.+|++||+
T Consensus 3 ly~~~~s~~s~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~inP~g~vP~L~~~g~~l~Es~aI~~yLe 73 (73)
T cd03052 3 LYHWTQSFSSQKVRLVIAEKGLRCEEYDVSLPLSEHNEPWFMRLNPTGEVPVLIHGDNIICDPTQIIDYLE 73 (73)
T ss_pred EecCCCCccHHHHHHHHHHcCCCCEEEEecCCcCccCCHHHHHhCcCCCCCEEEECCEEEEcHHHHHHHhC
Confidence 345568999999999999999999999988742 56789999999999999999999999999999984
No 29
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=99.76 E-value=2.3e-18 Score=107.08 Aligned_cols=71 Identities=27% Similarity=0.389 Sum_probs=64.5
Q ss_pred CCCCCCChhHHHHHHHHHhcCCCceeEeccCCCCchhhhhhCCC-CCccEEEeCCeeeeeHHHHHHHHHHhC
Q 029887 14 PDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFMEISPE-GKVPVVKFDDKWVADSDVIVRIIEEKY 84 (186)
Q Consensus 14 ~~~~~~sp~~~~vr~~L~~~gi~~~~~~~~~~~~~~~~~~~~p~-~~vP~L~~~g~~l~eS~aI~~yL~~~~ 84 (186)
++.+..||+|+|+|++|+++|++|+.+.++...+.+++.+.||. +++|+|+++|..++||.+|++||++++
T Consensus 3 Ly~~~~sp~~~~v~~~l~~~gl~~~~~~~~~~~~~~~~~~~~p~~~~vP~l~~~~~~l~eS~aI~~yL~~~~ 74 (74)
T cd03058 3 LLGAWASPFVLRVRIALALKGVPYEYVEEDLGNKSELLLASNPVHKKIPVLLHNGKPICESLIIVEYIDEAW 74 (74)
T ss_pred EEECCCCchHHHHHHHHHHcCCCCEEEEeCcccCCHHHHHhCCCCCCCCEEEECCEEeehHHHHHHHHHhhC
Confidence 45566899999999999999999999998887777889999995 999999999999999999999999864
No 30
>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.
Probab=99.75 E-value=4.1e-18 Score=108.51 Aligned_cols=80 Identities=24% Similarity=0.273 Sum_probs=67.3
Q ss_pred eeehhhhcccCCCCCCCChhHHHHHHHHHhcCCCceeEeccCCCCc---hhhhhhCCCCCccEEEeC-CeeeeeHHHHHH
Q 029887 3 VEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISDKP---QWFMEISPEGKVPVVKFD-DKWVADSDVIVR 78 (186)
Q Consensus 3 ~~~~~~~~~~~~~~~~~sp~~~~vr~~L~~~gi~~~~~~~~~~~~~---~~~~~~~p~~~vP~L~~~-g~~l~eS~aI~~ 78 (186)
|++|.++++ ....+.||||+|+|++|.++|++|+.+.++..++. +++ +.||.+++|+|+++ |..++||.+|++
T Consensus 1 ~~~~~~~~~--~~~~~~Sp~~~kv~~~L~~~~i~~~~~~~~~~~~~~~~~~~-~~~p~~~vP~L~~~~~~~l~eS~aI~~ 77 (84)
T cd03038 1 ITLYDLAGK--DPVRAFSPNVWKTRLALNHKGLEYKTVPVEFPDIPPILGEL-TSGGFYTVPVIVDGSGEVIGDSFAIAE 77 (84)
T ss_pred CeeEeccCC--CCCCCcCChhHHHHHHHHhCCCCCeEEEecCCCcccccccc-cCCCCceeCeEEECCCCEEeCHHHHHH
Confidence 467777644 33378999999999999999999999998875432 234 78999999999998 899999999999
Q ss_pred HHHHhCC
Q 029887 79 IIEEKYP 85 (186)
Q Consensus 79 yL~~~~~ 85 (186)
||+++|+
T Consensus 78 yL~~~~p 84 (84)
T cd03038 78 YLEEAYP 84 (84)
T ss_pred HHHHhCc
Confidence 9999875
No 31
>PF13409 GST_N_2: Glutathione S-transferase, N-terminal domain; PDB: 3C8E_B 3M1G_A 3R3E_A 3O3T_A 1RK4_A 1K0O_B 1K0N_A 3QR6_A 3SWL_A 3TGZ_B ....
Probab=99.75 E-value=5.7e-18 Score=104.10 Aligned_cols=65 Identities=35% Similarity=0.652 Sum_probs=56.1
Q ss_pred CChhHHHHHHHHHhcCCCceeEeccC----CCCchhhhhhCCCCCccEEEe-CCeeeeeHHHHHHHHHHh
Q 029887 19 DCPFSQRALLTLEEKKVPYKRHLINI----SDKPQWFMEISPEGKVPVVKF-DDKWVADSDVIVRIIEEK 83 (186)
Q Consensus 19 ~sp~~~~vr~~L~~~gi~~~~~~~~~----~~~~~~~~~~~p~~~vP~L~~-~g~~l~eS~aI~~yL~~~ 83 (186)
+|||++|++++|+++|++|+...+.. ..+.++|.+.||.|+||+|++ +|.++.||.+|++||+++
T Consensus 1 ~sP~a~Rv~i~l~~~gl~~~~~~v~~~~~~~~~~~~~~~~~p~~~VP~L~~~~g~vi~eS~~I~~yL~~~ 70 (70)
T PF13409_consen 1 FSPFAHRVRIALEEKGLPYEIKVVPLIPKGEQKPPEFLALNPRGKVPVLVDPDGTVINESLAILEYLEEQ 70 (70)
T ss_dssp T-HHHHHHHHHHHHHTGTCEEEEEETTTTBCTTCHBHHHHSTT-SSSEEEETTTEEEESHHHHHHHHHHT
T ss_pred CchHhHHHHHHHHHhCCCCEEEEEeeecCccccChhhhccCcCeEEEEEEECCCCEeeCHHHHHHHHhcC
Confidence 59999999999999999999988843 234578999999999999997 789999999999999874
No 32
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.74 E-value=6.3e-18 Score=105.90 Aligned_cols=71 Identities=18% Similarity=0.125 Sum_probs=61.9
Q ss_pred CCCCCCChhHHHHHHHHHhcCCCceeEeccCCC-CchhhhhhCCCCCccEEEe--CCeeeeeHHHHHHHHHHhC
Q 029887 14 PDILGDCPFSQRALLTLEEKKVPYKRHLINISD-KPQWFMEISPEGKVPVVKF--DDKWVADSDVIVRIIEEKY 84 (186)
Q Consensus 14 ~~~~~~sp~~~~vr~~L~~~gi~~~~~~~~~~~-~~~~~~~~~p~~~vP~L~~--~g~~l~eS~aI~~yL~~~~ 84 (186)
++.+..||||+|++++|.++|++|+.+.++... ..+++.+.||.+++|+|++ +|.+++||.+|++||+++|
T Consensus 4 Ly~~~~sp~~~kv~~~L~~~gi~y~~~~v~~~~~~~~~~~~~~p~~~vP~l~~~~~~~~l~es~~I~~yL~~~~ 77 (77)
T cd03041 4 LYEFEGSPFCRLVREVLTELELDVILYPCPKGSPKRDKFLEKGGKVQVPYLVDPNTGVQMFESADIVKYLFKTY 77 (77)
T ss_pred EecCCCCchHHHHHHHHHHcCCcEEEEECCCChHHHHHHHHhCCCCcccEEEeCCCCeEEEcHHHHHHHHHHhC
Confidence 455668999999999999999999999887543 3567999999999999997 3689999999999999875
No 33
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=99.74 E-value=7.1e-18 Score=105.33 Aligned_cols=70 Identities=27% Similarity=0.334 Sum_probs=62.6
Q ss_pred CCCCCCChhHHHHHHHHHhcCCCceeEeccCCC---CchhhhhhCCCCCccEEEeCCeeeeeHHHHHHHHHHh
Q 029887 14 PDILGDCPFSQRALLTLEEKKVPYKRHLINISD---KPQWFMEISPEGKVPVVKFDDKWVADSDVIVRIIEEK 83 (186)
Q Consensus 14 ~~~~~~sp~~~~vr~~L~~~gi~~~~~~~~~~~---~~~~~~~~~p~~~vP~L~~~g~~l~eS~aI~~yL~~~ 83 (186)
++....||+|+++|++|+++|++|+.+.++... ..+++.+.||.|++|+|+++|..++||.||++||+++
T Consensus 4 Ly~~~~s~~s~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~P~~~vP~l~~~g~~l~es~aI~~yL~~~ 76 (76)
T cd03053 4 LYGAAMSTCVRRVLLCLEEKGVDYELVPVDLTKGEHKSPEHLARNPFGQIPALEDGDLKLFESRAITRYLAEK 76 (76)
T ss_pred EEeCCCChhHHHHHHHHHHcCCCcEEEEeCccccccCCHHHHhhCCCCCCCEEEECCEEEEcHHHHHHHHhhC
Confidence 455668999999999999999999999888753 4578999999999999999999999999999999863
No 34
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=99.74 E-value=7.5e-18 Score=104.67 Aligned_cols=69 Identities=19% Similarity=0.218 Sum_probs=61.9
Q ss_pred CCCCCCChhHHHHHHHHHhcCCCceeEeccCCC---CchhhhhhCCCCCccEEEeCCeeeeeHHHHHHHHHH
Q 029887 14 PDILGDCPFSQRALLTLEEKKVPYKRHLINISD---KPQWFMEISPEGKVPVVKFDDKWVADSDVIVRIIEE 82 (186)
Q Consensus 14 ~~~~~~sp~~~~vr~~L~~~gi~~~~~~~~~~~---~~~~~~~~~p~~~vP~L~~~g~~l~eS~aI~~yL~~ 82 (186)
++....||+|++++++|+++|++|+.+.++..+ +.+++.+.||.|++|+|+++|..++||.||++||++
T Consensus 3 Ly~~~~~~~~~~v~~~l~~~gi~~e~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~~ 74 (74)
T cd03045 3 LYYLPGSPPCRAVLLTAKALGLELNLKEVNLMKGEHLKPEFLKLNPQHTVPTLVDNGFVLWESHAILIYLVE 74 (74)
T ss_pred EEeCCCCCcHHHHHHHHHHcCCCCEEEEecCccCCcCCHHHHhhCcCCCCCEEEECCEEEEcHHHHHHHHhC
Confidence 455668999999999999999999999998754 457899999999999999999999999999999974
No 35
>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC
Probab=99.74 E-value=1.6e-17 Score=103.74 Aligned_cols=71 Identities=25% Similarity=0.304 Sum_probs=63.4
Q ss_pred CCCCCCChhHHHHHHHHHhcCCCceeEeccCCC---CchhhhhhCCCCCccEEEeCCeeeeeHHHHHHHHHHhC
Q 029887 14 PDILGDCPFSQRALLTLEEKKVPYKRHLINISD---KPQWFMEISPEGKVPVVKFDDKWVADSDVIVRIIEEKY 84 (186)
Q Consensus 14 ~~~~~~sp~~~~vr~~L~~~gi~~~~~~~~~~~---~~~~~~~~~p~~~vP~L~~~g~~l~eS~aI~~yL~~~~ 84 (186)
++....|++|++++++|+++|++|+.+.++..+ +.+++.+.||.|++|+|+++|..++||.||++||+++|
T Consensus 3 ly~~~~s~~~~~v~~~l~~~g~~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~l~eS~aI~~Yl~~~~ 76 (76)
T cd03050 3 LYYDLMSQPSRAVYIFLKLNKIPFEECPIDLRKGEQLTPEFKKINPFGKVPAIVDGDFTLAESVAILRYLARKF 76 (76)
T ss_pred EeeCCCChhHHHHHHHHHHcCCCcEEEEecCCCCCcCCHHHHHhCcCCCCCEEEECCEEEEcHHHHHHHHHhhC
Confidence 445568999999999999999999999998754 34679999999999999999999999999999999875
No 36
>cd03044 GST_N_EF1Bgamma GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal TRX-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in prot
Probab=99.73 E-value=1.5e-17 Score=103.63 Aligned_cols=70 Identities=19% Similarity=0.159 Sum_probs=62.9
Q ss_pred CCCCCCCChhHHHHHHHHHhcCCCceeEeccCC--CCchhhhhhCCCCCccEEEe-CCeeeeeHHHHHHHHHH
Q 029887 13 APDILGDCPFSQRALLTLEEKKVPYKRHLINIS--DKPQWFMEISPEGKVPVVKF-DDKWVADSDVIVRIIEE 82 (186)
Q Consensus 13 ~~~~~~~sp~~~~vr~~L~~~gi~~~~~~~~~~--~~~~~~~~~~p~~~vP~L~~-~g~~l~eS~aI~~yL~~ 82 (186)
.++.+..||+++++|++|+++|++|+.+.++.. .+.++|.+.||.|++|+|++ +|.+++||.||++||++
T Consensus 2 ~Ly~~~~~~~~~~~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~nP~~~vP~L~~~~g~~l~es~aI~~yL~~ 74 (75)
T cd03044 2 TLYTYPGNPRSLKILAAAKYNGLDVEIVDFQPGKENKTPEFLKKFPLGKVPAFEGADGFCLFESNAIAYYVAN 74 (75)
T ss_pred eEecCCCCccHHHHHHHHHHcCCceEEEecccccccCCHHHHHhCCCCCCCEEEcCCCCEEeeHHHHHHHHhh
Confidence 356677899999999999999999999999976 36778999999999999997 58999999999999986
No 37
>cd03076 GST_N_Pi GST_N family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an increase in JNK activity, thereby promoting apoptosis. GSTP1 is expressed in various tumors and is the predominant GST in a w
Probab=99.72 E-value=1.1e-17 Score=103.75 Aligned_cols=66 Identities=15% Similarity=0.166 Sum_probs=59.9
Q ss_pred CCChhHHHHHHHHHhcCCCceeEeccCCCCchhhhhhCCCCCccEEEeCCeeeeeHHHHHHHHHHh
Q 029887 18 GDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFMEISPEGKVPVVKFDDKWVADSDVIVRIIEEK 83 (186)
Q Consensus 18 ~~sp~~~~vr~~L~~~gi~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~g~~l~eS~aI~~yL~~~ 83 (186)
..|++|+++|++|.++|++|+.+.++...+.+++.+.||.|++|+|+++|..++||.||++||+++
T Consensus 8 ~~~~~~~~v~~~L~~~~i~~e~~~v~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~~~ 73 (73)
T cd03076 8 PVRGRAEAIRLLLADQGISWEEERVTYEEWQESLKPKMLFGQLPCFKDGDLTLVQSNAILRHLGRK 73 (73)
T ss_pred CCcchHHHHHHHHHHcCCCCEEEEecHHHhhhhhhccCCCCCCCEEEECCEEEEcHHHHHHHHhcC
Confidence 358999999999999999999999987555667899999999999999999999999999999863
No 38
>cd03080 GST_N_Metaxin_like GST_N family, Metaxin subfamily, Metaxin-like proteins; a heterogenous group of proteins, predominantly uncharacterized, with similarity to metaxins and GSTs. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. One characterized member of this subgroup is a novel GST from Rhodococcus with toluene o-monooxygenase and gamma-glutamylcysteine synthetase activities. Also members are the cadmium-inducible lysosomal protein CDR-1 and its homologs from C. elegans, and the failed axon connections (fax) protein from Drosophila. CDR-1 is an integral membrane protein that functions to protect against cadmium toxicity and may also have a role in osmoregulation to maintain salt balance in C. ele
Probab=99.71 E-value=4.9e-17 Score=101.34 Aligned_cols=74 Identities=24% Similarity=0.457 Sum_probs=63.0
Q ss_pred eeehhhhcccCCCCCCCChhHHHHHHHHHhcCCCceeEeccCCCCchhhhhhCCCCCccEEEeCCeeeeeHHHHHHHHHH
Q 029887 3 VEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFMEISPEGKVPVVKFDDKWVADSDVIVRIIEE 82 (186)
Q Consensus 3 ~~~~~~~~~~~~~~~~~sp~~~~vr~~L~~~gi~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~g~~l~eS~aI~~yL~~ 82 (186)
++||..... ....+.||+|+|++++|+++|++|+.+.++. .+.+|.|++|+|+++|..++||.+|++||++
T Consensus 2 ~~L~~~~~~--~~~~~~sp~~~~v~~~L~~~gi~~~~~~~~~-------~~~~p~g~vPvl~~~g~~l~eS~~I~~yL~~ 72 (75)
T cd03080 2 ITLYQFPRA--FGVPSLSPFCLKVETFLRMAGIPYENKFGGL-------AKRSPKGKLPFIELNGEKIADSELIIDHLEE 72 (75)
T ss_pred EEEEecCCC--CCCCCCCHHHHHHHHHHHHCCCCcEEeecCc-------ccCCCCCCCCEEEECCEEEcCHHHHHHHHHH
Confidence 456665332 4556789999999999999999999988764 3679999999999999999999999999999
Q ss_pred hCC
Q 029887 83 KYP 85 (186)
Q Consensus 83 ~~~ 85 (186)
+|+
T Consensus 73 ~~~ 75 (75)
T cd03080 73 KYG 75 (75)
T ss_pred HcC
Confidence 875
No 39
>cd03048 GST_N_Ure2p_like GST_N family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The N-terminal TRX-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. Characterized GSTs in this subfamily include Aspergillus fumigatus GSTs 1 and 2, and
Probab=99.71 E-value=3.9e-17 Score=103.29 Aligned_cols=66 Identities=32% Similarity=0.527 Sum_probs=60.5
Q ss_pred ChhHHHHHHHHHhcCCCceeEeccCC---CCchhhhhhCCCCCccEEEeC---CeeeeeHHHHHHHHHHhCC
Q 029887 20 CPFSQRALLTLEEKKVPYKRHLINIS---DKPQWFMEISPEGKVPVVKFD---DKWVADSDVIVRIIEEKYP 85 (186)
Q Consensus 20 sp~~~~vr~~L~~~gi~~~~~~~~~~---~~~~~~~~~~p~~~vP~L~~~---g~~l~eS~aI~~yL~~~~~ 85 (186)
+|+|+++|++|+++|++|+.+.++.. .+.++|.+.||.+++|+|+++ |..|+||.+|++||+++|+
T Consensus 9 ~~~~~~v~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~g~~l~eS~aI~~yL~~~~~ 80 (81)
T cd03048 9 TPNGFKVSIMLEELGLPYEIHPVDISKGEQKKPEFLKINPNGRIPAIVDHNGTPLTVFESGAILLYLAEKYD 80 (81)
T ss_pred CCChHHHHHHHHHcCCCcEEEEecCcCCcccCHHHHHhCcCCCCCEEEeCCCCceEEEcHHHHHHHHHHHhC
Confidence 49999999999999999999999864 356789999999999999987 8999999999999999986
No 40
>cd03043 GST_N_1 GST_N family, unknown subfamily 1; composed of uncharacterized proteins, predominantly from bacteria, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.71 E-value=5.3e-17 Score=100.60 Aligned_cols=66 Identities=27% Similarity=0.357 Sum_probs=60.1
Q ss_pred CCCCChhHHHHHHHHHhcCCCceeEeccCCC--CchhhhhhCCCCCccEEEeCCeeeeeHHHHHHHHH
Q 029887 16 ILGDCPFSQRALLTLEEKKVPYKRHLINISD--KPQWFMEISPEGKVPVVKFDDKWVADSDVIVRIIE 81 (186)
Q Consensus 16 ~~~~sp~~~~vr~~L~~~gi~~~~~~~~~~~--~~~~~~~~~p~~~vP~L~~~g~~l~eS~aI~~yL~ 81 (186)
+...||+++++|++|+++|++|+.+.++..+ ..++|.+.||.|++|+|+++|.+++||.+|++||+
T Consensus 6 ~~~~s~~s~~v~~~L~~~gl~~e~~~v~~~~~~~~~~~~~~nP~g~vP~L~~~g~~l~eS~aI~~YL~ 73 (73)
T cd03043 6 NKNYSSWSLRPWLLLKAAGIPFEEILVPLYTPDTRARILEFSPTGKVPVLVDGGIVVWDSLAICEYLA 73 (73)
T ss_pred CCCCCHHHHHHHHHHHHcCCCCEEEEeCCCCccccHHHHhhCCCCcCCEEEECCEEEEcHHHHHHHhC
Confidence 4568999999999999999999999998754 35789999999999999999999999999999984
No 41
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=99.71 E-value=2.7e-17 Score=105.87 Aligned_cols=72 Identities=38% Similarity=0.666 Sum_probs=64.2
Q ss_pred cccCCCCCCCChhHHHHHHHHHhcCCCceeEeccCCCCchhhhhhCCCCCccEEEeC-CeeeeeHHHHHHHHH
Q 029887 10 AVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFMEISPEGKVPVVKFD-DKWVADSDVIVRIIE 81 (186)
Q Consensus 10 ~~~~~~~~~~sp~~~~vr~~L~~~gi~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~-g~~l~eS~aI~~yL~ 81 (186)
+...++....||||++++++|+++|++|+.+.++...+++++.+.||.+++|+|+++ |..++||.+|++||+
T Consensus 17 ~~~~Ly~~~~sp~~~kv~~~L~~~gl~~~~~~v~~~~~~~~~~~~np~~~vPvL~~~~g~~l~eS~aI~~yLe 89 (89)
T cd03055 17 GIIRLYSMRFCPYAQRARLVLAAKNIPHEVININLKDKPDWFLEKNPQGKVPALEIDEGKVVYESLIICEYLD 89 (89)
T ss_pred CcEEEEeCCCCchHHHHHHHHHHcCCCCeEEEeCCCCCcHHHHhhCCCCCcCEEEECCCCEEECHHHHHHhhC
Confidence 334556667899999999999999999999999987777789999999999999986 899999999999985
No 42
>cd03046 GST_N_GTT1_like GST_N family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endoplasmic reticulum. Its expression is induced after diauxic shift and remains high throughout the stationary phase. S. pomb
Probab=99.70 E-value=7e-17 Score=100.75 Aligned_cols=65 Identities=35% Similarity=0.496 Sum_probs=59.6
Q ss_pred hhHHHHHHHHHhcCCCceeEeccCC---CCchhhhhhCCCCCccEEEeCCeeeeeHHHHHHHHHHhCC
Q 029887 21 PFSQRALLTLEEKKVPYKRHLINIS---DKPQWFMEISPEGKVPVVKFDDKWVADSDVIVRIIEEKYP 85 (186)
Q Consensus 21 p~~~~vr~~L~~~gi~~~~~~~~~~---~~~~~~~~~~p~~~vP~L~~~g~~l~eS~aI~~yL~~~~~ 85 (186)
++++++|++|+++|++|+.+.++.. .+.+++.+.||.+++|+|+++|..++||.+|++||+++|+
T Consensus 9 ~~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~g~~l~es~aI~~yL~~~~~ 76 (76)
T cd03046 9 SRSFRILWLLEELGLPYELVLYDRGPGEQAPPEYLAINPLGKVPVLVDGDLVLTESAAIILYLAEKYG 76 (76)
T ss_pred CChHHHHHHHHHcCCCcEEEEeCCCCCccCCHHHHhcCCCCCCCEEEECCEEEEcHHHHHHHHHHhCc
Confidence 5799999999999999999999874 3567899999999999999999999999999999999875
No 43
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=99.70 E-value=5.9e-17 Score=99.87 Aligned_cols=68 Identities=25% Similarity=0.417 Sum_probs=58.5
Q ss_pred CCCCCCChhHHHHHHHHHhcCCCceeEeccCCCCchhhhhhCCCCCccEEEeC-CeeeeeHHHHHHHHHH
Q 029887 14 PDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFMEISPEGKVPVVKFD-DKWVADSDVIVRIIEE 82 (186)
Q Consensus 14 ~~~~~~sp~~~~vr~~L~~~gi~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~-g~~l~eS~aI~~yL~~ 82 (186)
++.+..||||+|+|++|.++|++|+.+.++.... ....+.+|.+++|+|+++ |..++||.+|++||++
T Consensus 3 Ly~~~~~p~~~rvr~~L~~~gl~~~~~~~~~~~~-~~~~~~~~~~~vP~L~~~~~~~l~es~aI~~yL~~ 71 (71)
T cd03037 3 LYIYEHCPFCVKARMIAGLKNIPVEQIILQNDDE-ATPIRMIGAKQVPILEKDDGSFMAESLDIVAFIDE 71 (71)
T ss_pred eEecCCCcHhHHHHHHHHHcCCCeEEEECCCCch-HHHHHhcCCCccCEEEeCCCeEeehHHHHHHHHhC
Confidence 5667789999999999999999999998885432 334677999999999976 8999999999999974
No 44
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.70 E-value=6e-17 Score=100.23 Aligned_cols=68 Identities=22% Similarity=0.357 Sum_probs=60.9
Q ss_pred CCCCCCChhHHHHHHHHHhcCCCceeEeccCCC---CchhhhhhCCCCCccEEEeCCeeeeeHHHHHHHHH
Q 029887 14 PDILGDCPFSQRALLTLEEKKVPYKRHLINISD---KPQWFMEISPEGKVPVVKFDDKWVADSDVIVRIIE 81 (186)
Q Consensus 14 ~~~~~~sp~~~~vr~~L~~~gi~~~~~~~~~~~---~~~~~~~~~p~~~vP~L~~~g~~l~eS~aI~~yL~ 81 (186)
++.+..||+|+++|++|+++|++|+.+.++... +.+++.+.||.+++|+|+++|..++||.+|++||+
T Consensus 3 Ly~~~~~~~~~~v~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~i~es~aI~~yl~ 73 (73)
T cd03056 3 LYGFPLSGNCYKVRLLLALLGIPYEWVEVDILKGETRTPEFLALNPNGEVPVLELDGRVLAESNAILVYLA 73 (73)
T ss_pred EEeCCCCccHHHHHHHHHHcCCCcEEEEecCCCcccCCHHHHHhCCCCCCCEEEECCEEEEcHHHHHHHhC
Confidence 455668999999999999999999999998643 56789999999999999999999999999999984
No 45
>cd03039 GST_N_Sigma_like GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition of platelet aggregation, bronchoconstriction, vasodilation and mediation of allergy and inflammation. Other class Sigma
Probab=99.69 E-value=3.3e-17 Score=101.29 Aligned_cols=67 Identities=21% Similarity=0.258 Sum_probs=58.6
Q ss_pred CCCCChhHHHHHHHHHhcCCCceeEeccCCCC-chhhhhhCCCCCccEEEeCCeeeeeHHHHHHHHHH
Q 029887 16 ILGDCPFSQRALLTLEEKKVPYKRHLINISDK-PQWFMEISPEGKVPVVKFDDKWVADSDVIVRIIEE 82 (186)
Q Consensus 16 ~~~~sp~~~~vr~~L~~~gi~~~~~~~~~~~~-~~~~~~~~p~~~vP~L~~~g~~l~eS~aI~~yL~~ 82 (186)
.+..|++|+++|++|+++|++|+.+.++..+. .+++.+.||.+++|+|+++|..++||.||++||++
T Consensus 5 ~~~~~~~~~~v~~~l~~~gi~~e~~~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~l~es~aI~~yL~~ 72 (72)
T cd03039 5 YFNIRGRGEPIRLLLADAGVEYEDVRITYEEWPELDLKPTLPFGQLPVLEIDGKKLTQSNAILRYLAR 72 (72)
T ss_pred EEcCcchHHHHHHHHHHCCCCcEEEEeCHHHhhhhhhccCCcCCCCCEEEECCEEEEecHHHHHHhhC
Confidence 34568999999999999999999999987543 23488899999999999999999999999999974
No 46
>cd03047 GST_N_2 GST_N family, unknown subfamily 2; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The sequence from Burkholderia cepacia was identified as part of a gene cluster involved in the degradation of 2,4,5-trichlorophenoxyacetic acid. Some GSTs (e.g. Class Zeta and Delta) are known to catalyze dechlorination reactions.
Probab=99.69 E-value=7.2e-17 Score=100.03 Aligned_cols=68 Identities=25% Similarity=0.284 Sum_probs=60.2
Q ss_pred CCCCCCChhHHHHHHHHHhcCCCceeEeccCCC---CchhhhhhCCCCCccEEEeCCeeeeeHHHHHHHHH
Q 029887 14 PDILGDCPFSQRALLTLEEKKVPYKRHLINISD---KPQWFMEISPEGKVPVVKFDDKWVADSDVIVRIIE 81 (186)
Q Consensus 14 ~~~~~~sp~~~~vr~~L~~~gi~~~~~~~~~~~---~~~~~~~~~p~~~vP~L~~~g~~l~eS~aI~~yL~ 81 (186)
++....||+++++|++|+++|++|+.+.++... ..+++.+.||.|++|+|+++|..++||.||++||+
T Consensus 3 l~~~~~s~~~~~v~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~nP~~~vP~L~~~~~~l~eS~aI~~YL~ 73 (73)
T cd03047 3 IWGRRSSINVQKVLWLLDELGLPYERIDAGGQFGGLDTPEFLAMNPNGRVPVLEDGDFVLWESNAILRYLA 73 (73)
T ss_pred EEecCCCcchHHHHHHHHHcCCCCEEEEeccccccccCHHHHhhCCCCCCCEEEECCEEEECHHHHHHHhC
Confidence 455668999999999999999999999887532 45779999999999999999999999999999984
No 47
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.69 E-value=7.2e-17 Score=100.00 Aligned_cols=68 Identities=19% Similarity=0.289 Sum_probs=61.3
Q ss_pred CCCCCCChhHHHHHHHHHh--cCCCceeEeccCCCCchhhhhhCCCCCccEEEe-CCeeeeeHHHHHHHHH
Q 029887 14 PDILGDCPFSQRALLTLEE--KKVPYKRHLINISDKPQWFMEISPEGKVPVVKF-DDKWVADSDVIVRIIE 81 (186)
Q Consensus 14 ~~~~~~sp~~~~vr~~L~~--~gi~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~-~g~~l~eS~aI~~yL~ 81 (186)
++.+..||+|+++|++|++ +|++|+.+.++...+.+++.+.||.+++|+|++ +|..+.||.+|++||+
T Consensus 3 Ly~~~~s~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~~g~~l~es~aI~~yLe 73 (73)
T cd03049 3 LLYSPTSPYVRKVRVAAHETGLGDDVELVLVNPWSDDESLLAVNPLGKIPALVLDDGEALFDSRVICEYLD 73 (73)
T ss_pred EecCCCCcHHHHHHHHHHHhCCCCCcEEEEcCcccCChHHHHhCCCCCCCEEEECCCCEEECHHHHHhhhC
Confidence 4556789999999999999 899999999987777788999999999999984 7899999999999984
No 48
>cd03057 GST_N_Beta GST_N family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site forms a covalent bond with GSH.
Probab=99.69 E-value=1.2e-16 Score=100.00 Aligned_cols=64 Identities=23% Similarity=0.476 Sum_probs=58.4
Q ss_pred hHHHHHHHHHhcCCCceeEeccCCC---CchhhhhhCCCCCccEEEeC-CeeeeeHHHHHHHHHHhCC
Q 029887 22 FSQRALLTLEEKKVPYKRHLINISD---KPQWFMEISPEGKVPVVKFD-DKWVADSDVIVRIIEEKYP 85 (186)
Q Consensus 22 ~~~~vr~~L~~~gi~~~~~~~~~~~---~~~~~~~~~p~~~vP~L~~~-g~~l~eS~aI~~yL~~~~~ 85 (186)
+++++|++|+++|++|+.+.++..+ +.+++++.||.+++|+|+++ |..++||.+|++||+++||
T Consensus 10 ~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~np~~~vP~l~~~~g~~l~eS~aI~~yL~~~~p 77 (77)
T cd03057 10 CSLAPHIALEELGLPFELVRVDLRTKTQKGADYLAINPKGQVPALVLDDGEVLTESAAILQYLADLHP 77 (77)
T ss_pred chHHHHHHHHHcCCCceEEEEecccCccCCHhHHHhCCCCCCCEEEECCCcEEEcHHHHHHHHHHhCc
Confidence 5889999999999999999998754 46789999999999999986 8999999999999999885
No 49
>KOG3029 consensus Glutathione S-transferase-related protein [General function prediction only]
Probab=99.69 E-value=1.1e-16 Score=119.20 Aligned_cols=165 Identities=20% Similarity=0.260 Sum_probs=110.6
Q ss_pred CCCCCCChhHHHHHHHHHhcCCCceeEeccCCCCchhhhhhCCCCCccEEEeCCeeeeeHHHHHHHHHH-----------
Q 029887 14 PDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFMEISPEGKVPVVKFDDKWVADSDVIVRIIEE----------- 82 (186)
Q Consensus 14 ~~~~~~sp~~~~vr~~L~~~gi~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~g~~l~eS~aI~~yL~~----------- 82 (186)
+|.+-.||||.|||.+|.+.|++|+++++++..+.+ ++-+...+||+|...|..+.||.+|+--|..
T Consensus 93 LyQyetCPFCcKVrAFLDyhgisY~VVEVnpV~r~e--Ik~SsykKVPil~~~Geqm~dSsvIIs~laTyLq~~~q~l~e 170 (370)
T KOG3029|consen 93 LYQYETCPFCCKVRAFLDYHGISYAVVEVNPVLRQE--IKWSSYKKVPILLIRGEQMVDSSVIISLLATYLQDKRQDLGE 170 (370)
T ss_pred EEeeccCchHHHHHHHHhhcCCceEEEEecchhhhh--ccccccccccEEEeccceechhHHHHHHHHHHhccCCCCHHH
Confidence 455679999999999999999999999999876554 4445678999999878779999999876643
Q ss_pred ---hCCCCCCCCChH----------------------------HHhhccccchHHHH-----------------------
Q 029887 83 ---KYPEPSLTNPPE----------------------------FASLGSKIFPSFVN----------------------- 108 (186)
Q Consensus 83 ---~~~~~~l~~~~~----------------------------~~~~~~~~~~~~~~----------------------- 108 (186)
-||..+..+.+. ..+..+|+...+..
T Consensus 171 iiq~yPa~~~~ne~GK~v~~~~NKyflM~~e~d~~~~ke~~~eerkWR~WvDn~lVHLiSPNvYrn~~EsletFewf~q~ 250 (370)
T KOG3029|consen 171 IIQMYPATSFFNEDGKEVNDILNKYFLMYREHDPGVSKETDEEERKWRSWVDNHLVHLISPNVYRNMGESLETFEWFSQA 250 (370)
T ss_pred HHHhccccccccccccchhhcchhheeeeeccCCCccccchHHHhHHHHHHhhhhhhhcCcccccChhhHHHHHHHHHHc
Confidence 334211111110 11122332221111
Q ss_pred ----------------------------hhcCCCCCchHHHHHHHHHHHHHHHHhhCCCCcccCCCCChhHHHhhhHHHH
Q 029887 109 ----------------------------FLKSKDPNDGTEQALLEELKALDEHLKTHGGPFIAGEKVTAVDLSLAPKLYH 160 (186)
Q Consensus 109 ----------------------------~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~yl~G~~~t~aDi~~~~~l~~ 160 (186)
-+..+.+-...++.+.+.++.|-..|+++ .+|+.|++|++||+.+|+++..
T Consensus 251 G~w~~~FpawEr~lavY~GAtAM~lisK~LKkkhni~D~Re~lydA~d~Wvaalgkn-r~flGG~kPnLaDLsvfGvl~s 329 (370)
T KOG3029|consen 251 GEWDVHFPAWERDLAVYCGATAMYLISKMLKKKHNISDEREHLYDAADQWVAALGKN-RPFLGGKKPNLADLSVFGVLRS 329 (370)
T ss_pred CCccccCchHHHHHHHHhhHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhCCC-CCccCCCCCchhhhhhhhhhhH
Confidence 11112222335567778888888888754 6999999999999999999998
Q ss_pred HHHHhhhccCCCCCccchhhhcccc
Q 029887 161 LQVALEHFKQWTVPESLAHVHGYTK 185 (186)
Q Consensus 161 ~~~~~~~~~~~~~~~~~p~l~~w~~ 185 (186)
+... ..+...=.+.+|..|+.
T Consensus 330 m~gc----~afkd~~q~t~I~eW~~ 350 (370)
T KOG3029|consen 330 MEGC----QAFKDCLQNTSIGEWYY 350 (370)
T ss_pred hhhh----hHHHHHHhcchHHHHHH
Confidence 8753 22222234677888874
No 50
>KOG4244 consensus Failed axon connections (fax) protein/glutathione S-transferase-like protein [Signal transduction mechanisms]
Probab=99.69 E-value=7.5e-17 Score=119.29 Aligned_cols=165 Identities=17% Similarity=0.303 Sum_probs=118.1
Q ss_pred CCCCCCCChhHHHHHHHHHhcCCCceeEeccCCCCchhhhhhCCCCCccEEEeCCeeeeeHHHHHHHHHHhCCCCCCCCC
Q 029887 13 APDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFMEISPEGKVPVVKFDDKWVADSDVIVRIIEEKYPEPSLTNP 92 (186)
Q Consensus 13 ~~~~~~~sp~~~~vr~~L~~~gi~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~g~~l~eS~aI~~yL~~~~~~~~l~~~ 92 (186)
....+.-||||.|+...|+..+||||.+.-. +...+++|++|.++-+|..+.+|.-|..+|.++++-+..+++
T Consensus 54 ~~~~PnLSPfClKvEt~lR~~~IpYE~~~~~-------~~~rSr~G~lPFIELNGe~iaDS~~I~~~L~~hf~~~~~L~~ 126 (281)
T KOG4244|consen 54 TKTCPNLSPFCLKVETFLRAYDIPYEIVDCS-------LKRRSRNGTLPFIELNGEHIADSDLIEDRLRKHFKIPDDLSA 126 (281)
T ss_pred cCCCCCCChHHHHHHHHHHHhCCCceecccc-------ceeeccCCCcceEEeCCeeccccHHHHHHHHHHcCCCCCCCH
Confidence 3566779999999999999999999998443 335577999999999999999999999999999987764555
Q ss_pred hHHHh------hcc----------------c-------------cchHHHHhh-----c-----------CCCCCchHHH
Q 029887 93 PEFAS------LGS----------------K-------------IFPSFVNFL-----K-----------SKDPNDGTEQ 121 (186)
Q Consensus 93 ~~~~~------~~~----------------~-------------~~~~~~~~~-----~-----------~~~~~~~~~~ 121 (186)
.+++. +.+ | +.+.+..++ . +.-..++..+
T Consensus 127 e~~a~s~Al~rm~dnhL~~~l~y~k~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~f~~kv~~r~~g~IG~f~~~Ei~e 206 (281)
T KOG4244|consen 127 EQRAQSRALSRMADNHLFWILLYYKGADDAWLNTDRKLIGLPGFLFPLLLPLFWKAIFGKKVYKRSTGAIGDFESAEIDE 206 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHHHhhccccCcCHHHHHH
Confidence 54331 000 0 000111111 0 0112234556
Q ss_pred HHHHHHHHHHHHHhhCCCCcccCCCCChhHHHhhhHHHHHHHHhhhccCCCCCccchhhhccccC
Q 029887 122 ALLEELKALDEHLKTHGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYTKV 186 (186)
Q Consensus 122 ~~~~~l~~le~~L~~~~~~yl~G~~~t~aDi~~~~~l~~~~~~~~~~~~~~~~~~~p~l~~w~~~ 186 (186)
.+.+.|..++..|+.+ +||.|+++|-+|+.+|+.|..+.+-......-.+.+++|+|..|.+|
T Consensus 207 ll~rDlr~i~~~Lg~K--kflfGdkit~~DatvFgqLa~v~YP~~~~i~d~le~d~p~l~eYceR 269 (281)
T KOG4244|consen 207 LLHRDLRAISDYLGDK--KFLFGDKITPADATVFGQLAQVYYPFRSHISDLLEGDFPNLLEYCER 269 (281)
T ss_pred HHHHHHHHHHHHhCCC--ccccCCCCCcceeeehhhhhheeccCCCcHHHHHhhhchHHHHHHHH
Confidence 7788899999999977 99999999999999999998876511111111124789999998875
No 51
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=99.68 E-value=8.7e-17 Score=99.66 Aligned_cols=68 Identities=24% Similarity=0.367 Sum_probs=60.1
Q ss_pred CCCCCCChhHHHHHHHHHhcCCCceeEeccCCC---CchhhhhhCCCCCccEEEe-CCeeeeeHHHHHHHHH
Q 029887 14 PDILGDCPFSQRALLTLEEKKVPYKRHLINISD---KPQWFMEISPEGKVPVVKF-DDKWVADSDVIVRIIE 81 (186)
Q Consensus 14 ~~~~~~sp~~~~vr~~L~~~gi~~~~~~~~~~~---~~~~~~~~~p~~~vP~L~~-~g~~l~eS~aI~~yL~ 81 (186)
++....||+|+|+|++|.++|++|+.+.++... ..+++.+.||.+++|+|++ +|..++||.+|++||+
T Consensus 3 Ly~~~~s~~~~~~~~~L~~~~l~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~~l~es~aI~~yLe 74 (74)
T cd03051 3 LYDSPTAPNPRRVRIFLAEKGIDVPLVTVDLAAGEQRSPEFLAKNPAGTVPVLELDDGTVITESVAICRYLE 74 (74)
T ss_pred EEeCCCCcchHHHHHHHHHcCCCceEEEeecccCccCCHHHHhhCCCCCCCEEEeCCCCEEecHHHHHHHhC
Confidence 456678999999999999999999999998643 4567999999999999985 7789999999999985
No 52
>PF02798 GST_N: Glutathione S-transferase, N-terminal domain; InterPro: IPR004045 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of Cephalopoda is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Soluble GSTs activate glutathione (GSH) to GS-. In many GSTs, this is accomplished by a Tyr at H-bonding distance from the sulphur of GSH. These enzymes catalyse nucleophilic attack by reduced glutathione (GSH) on nonpolar compounds that contain an electrophillic carbon, nitrogen, or sulphur atom []. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold, with each monomer composed of two distinct domains []. The N-terminal domain forms a thioredoxin-like fold that binds the glutathione moiety, while the C-terminal domain contains several hydrophobic alpha-helices that specifically bind hydrophobic substrates. This entry represents the N-terminal domain of GST.; GO: 0005515 protein binding; PDB: 2VCT_H 2WJU_B 4ACS_A 1BYE_D 1AXD_B 2VCV_P 1TDI_A 1JLV_D 1Y6E_A 1U88_B ....
Probab=99.68 E-value=8.8e-17 Score=100.39 Aligned_cols=63 Identities=30% Similarity=0.430 Sum_probs=55.3
Q ss_pred ChhHHHHHHHHHhcCCCceeEeccCCC---CchhhhhhCCC-CCccEEEeC-CeeeeeHHHHHHHHHH
Q 029887 20 CPFSQRALLTLEEKKVPYKRHLINISD---KPQWFMEISPE-GKVPVVKFD-DKWVADSDVIVRIIEE 82 (186)
Q Consensus 20 sp~~~~vr~~L~~~gi~~~~~~~~~~~---~~~~~~~~~p~-~~vP~L~~~-g~~l~eS~aI~~yL~~ 82 (186)
..++.++|++|+++|++|+.+.++... +.+++.+.||. |++|+|+++ |..++||.||++||++
T Consensus 9 ~~~~~~~r~~l~~~gv~~e~~~v~~~~~~~~~~e~~~~~p~~g~vP~l~~~~~~~l~es~AI~~YLa~ 76 (76)
T PF02798_consen 9 RGRSERIRLLLAEKGVEYEDVRVDFEKGEHKSPEFLAINPMFGKVPALEDGDGFVLTESNAILRYLAR 76 (76)
T ss_dssp STTTHHHHHHHHHTT--EEEEEEETTTTGGGSHHHHHHTTTSSSSSEEEETTTEEEESHHHHHHHHHH
T ss_pred CCchHHHHHHHHHhcccCceEEEecccccccchhhhhcccccceeeEEEECCCCEEEcHHHHHHHhCC
Confidence 337999999999999999999999854 34889999999 999999998 9999999999999985
No 53
>cd03042 GST_N_Zeta GST_N family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates but display modest GSH peroxidase activity. They are also implicated in the detoxification of the carcinogen dichloroacetic acid by catalyzing its dechlorination to glyoxylic acid.
Probab=99.68 E-value=1.6e-16 Score=98.33 Aligned_cols=68 Identities=19% Similarity=0.247 Sum_probs=60.8
Q ss_pred CCCCCCChhHHHHHHHHHhcCCCceeEeccCCC---CchhhhhhCCCCCccEEEeCCeeeeeHHHHHHHHH
Q 029887 14 PDILGDCPFSQRALLTLEEKKVPYKRHLINISD---KPQWFMEISPEGKVPVVKFDDKWVADSDVIVRIIE 81 (186)
Q Consensus 14 ~~~~~~sp~~~~vr~~L~~~gi~~~~~~~~~~~---~~~~~~~~~p~~~vP~L~~~g~~l~eS~aI~~yL~ 81 (186)
++.+..|++|+++|++|+++|++|+.+.++..+ +.+++.+.||.+++|+|+++|..++||.||++||+
T Consensus 3 L~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~ 73 (73)
T cd03042 3 LYSYFRSSASYRVRIALNLKGLDYEYVPVNLLKGEQLSPAYRALNPQGLVPTLVIDGLVLTQSLAIIEYLD 73 (73)
T ss_pred EecCCCCcchHHHHHHHHHcCCCCeEEEecCccCCcCChHHHHhCCCCCCCEEEECCEEEEcHHHHHHHhC
Confidence 455567999999999999999999999998743 56789999999999999999999999999999984
No 54
>cd03075 GST_N_Mu GST_N family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the most abundant GSTs in human liver, skeletal muscle and brain, and are believed to provide protection against diseases inc
Probab=99.65 E-value=3.6e-16 Score=99.02 Aligned_cols=67 Identities=19% Similarity=0.159 Sum_probs=56.0
Q ss_pred CCChhHHHHHHHHHhcCCCceeEeccCCCC----chhhhh-h----CCCCCccEEEeCCeeeeeHHHHHHHHHHhC
Q 029887 18 GDCPFSQRALLTLEEKKVPYKRHLINISDK----PQWFME-I----SPEGKVPVVKFDDKWVADSDVIVRIIEEKY 84 (186)
Q Consensus 18 ~~sp~~~~vr~~L~~~gi~~~~~~~~~~~~----~~~~~~-~----~p~~~vP~L~~~g~~l~eS~aI~~yL~~~~ 84 (186)
..++.|+++|++|+++|++|+.+.++...+ .+++.+ . +|+|+||+|+++|..++||.||++||++++
T Consensus 7 ~~~~~~~~~~~~l~~~gi~~e~~~v~~~~~~~~~~~~~~~~~~~~~~P~g~vP~L~~~g~~l~ES~AIl~YLa~~~ 82 (82)
T cd03075 7 DIRGLAQPIRLLLEYTGEKYEEKRYELGDAPDYDRSQWLNEKFKLGLDFPNLPYYIDGDVKLTQSNAILRYIARKH 82 (82)
T ss_pred CCccccHHHHHHHHHcCCCcEEEEeccCCccccchHhhhccchhcCCcCCCCCEEEECCEEEeehHHHHHHHhhcC
Confidence 457889999999999999999999997542 233332 2 299999999999999999999999999865
No 55
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=99.64 E-value=1e-15 Score=94.50 Aligned_cols=71 Identities=23% Similarity=0.315 Sum_probs=61.1
Q ss_pred eehhhhcccCCCCCCCChhHHHHHHHHHhcCCCceeEeccCCCCchhhhhhCCCCCccEEEeCCeeeeeHHHHHHHHHHh
Q 029887 4 EICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFMEISPEGKVPVVKFDDKWVADSDVIVRIIEEK 83 (186)
Q Consensus 4 ~~~~~~~~~~~~~~~~sp~~~~vr~~L~~~gi~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~g~~l~eS~aI~~yL~~~ 83 (186)
+||-+.. .......||+|++++++|+++|++|+.+.++.. ..+|.|++|+|+++|..+.||.+|++||+++
T Consensus 2 ~L~~~~~--~~~~~s~sp~~~~v~~~L~~~~i~~~~~~~~~~-------~~~p~g~vP~l~~~g~~l~es~~I~~yL~~~ 72 (72)
T cd03054 2 ELYQWGR--AFGLPSLSPECLKVETYLRMAGIPYEVVFSSNP-------WRSPTGKLPFLELNGEKIADSEKIIEYLKKK 72 (72)
T ss_pred EEEEeCC--CCCCCCCCHHHHHHHHHHHhCCCceEEEecCCc-------ccCCCcccCEEEECCEEEcCHHHHHHHHhhC
Confidence 4565543 466677999999999999999999999988753 2689999999999999999999999999874
No 56
>COG2999 GrxB Glutaredoxin 2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=8.4e-16 Score=107.26 Aligned_cols=160 Identities=21% Similarity=0.345 Sum_probs=108.7
Q ss_pred CCCCCCCChhHHHHHHHHHhcCCCceeEeccCCCCchhhhhhCCCCCccEEE-eCCeeeeeHHHHHHHHHHhCCCCCCCC
Q 029887 13 APDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFMEISPEGKVPVVK-FDDKWVADSDVIVRIIEEKYPEPSLTN 91 (186)
Q Consensus 13 ~~~~~~~sp~~~~vr~~L~~~gi~~~~~~~~~~~~~~~~~~~~p~~~vP~L~-~~g~~l~eS~aI~~yL~~~~~~~~l~~ 91 (186)
.+|++..||||.|+|+++..+|||++.+....++ ++.-.++....+||+|+ ++|..+.||..|.+|+++..+.+-+.
T Consensus 2 kLYIYdHCPfcvrarmi~Gl~nipve~~vL~nDD-e~Tp~rmiG~KqVPiL~Kedg~~m~ESlDIV~y~d~~~~~~~lt- 79 (215)
T COG2999 2 KLYIYDHCPFCVRARMIFGLKNIPVELHVLLNDD-EETPIRMIGQKQVPILQKEDGRAMPESLDIVHYVDELDGKPLLT- 79 (215)
T ss_pred ceeEeccChHHHHHHHHhhccCCChhhheeccCc-ccChhhhhcccccceEEccccccchhhhHHHHHHHHhcCchhhc-
Confidence 4778889999999999999999999998877654 33345667788999998 68899999999999999988854222
Q ss_pred ChHHHhhcccc-----------chHHH-------------HhhcCCCC------------CchHHHHHHHHHHHHHHHHh
Q 029887 92 PPEFASLGSKI-----------FPSFV-------------NFLKSKDP------------NDGTEQALLEELKALDEHLK 135 (186)
Q Consensus 92 ~~~~~~~~~~~-----------~~~~~-------------~~~~~~~~------------~~~~~~~~~~~l~~le~~L~ 135 (186)
...+.++.+|+ .+.|. .++..+.+ ......++...|+.++.++.
T Consensus 80 ~~~~pai~~wlrkv~~y~nkll~PR~~k~~l~EF~T~sA~~yf~~KKe~s~g~F~~~l~~t~~~~~~i~~dl~~l~~Li~ 159 (215)
T COG2999 80 GKVRPAIEAWLRKVNGYLNKLLLPRFAKSALPEFATPSARKYFTDKKEASEGSFESLLNHTAQYLKRIQADLRALDKLIV 159 (215)
T ss_pred cCcCHHHHHHHHHhcchHhhhhhhhHhhcCCccccCHHHHHHHHhhhhhccccHHHHHhchHHHHHHHHHHHHHHHHHhc
Confidence 11111222222 12222 11211111 13445677788888888887
Q ss_pred hCCCCcccCCCCChhHHHhhhHHHHHHHHhhhccCCCCCccchhhhccc
Q 029887 136 THGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYT 184 (186)
Q Consensus 136 ~~~~~yl~G~~~t~aDi~~~~~l~~~~~~~~~~~~~~~~~~~p~l~~w~ 184 (186)
.. + -....+|.-|+.+|+.|+.+.. .++..|+ ..+..|.
T Consensus 160 ~~--s-~~n~~l~~ddi~vFplLRnlt~----v~gi~wp---s~v~dy~ 198 (215)
T COG2999 160 GP--S-AVNGELSEDDILVFPLLRNLTL----VAGIQWP---SRVADYR 198 (215)
T ss_pred Cc--c-hhccccchhhhhhhHHhcccee----cccCCCc---HHHHHHH
Confidence 64 2 2334699999999999998763 5665553 2444444
No 57
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=99.63 E-value=7.9e-16 Score=96.28 Aligned_cols=67 Identities=22% Similarity=0.434 Sum_probs=56.8
Q ss_pred CCCCChhHHHHHHHHHhcCCCceeEeccCCCCchhhhhhCCCCCccEEEeC----CeeeeeHHHHHHHHHHhC
Q 029887 16 ILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFMEISPEGKVPVVKFD----DKWVADSDVIVRIIEEKY 84 (186)
Q Consensus 16 ~~~~sp~~~~vr~~L~~~gi~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~----g~~l~eS~aI~~yL~~~~ 84 (186)
....||||+++|++|.++|++|+.+.++....++ .+.+|.+++|+|+++ |.++.||.+|++||+++.
T Consensus 6 ~~~~~p~c~kv~~~L~~~gi~y~~~~~~~~~~~~--~~~~~~~~vP~l~~~~~~~~~~l~eS~~I~~yL~~~~ 76 (77)
T cd03040 6 QYKTCPFCCKVRAFLDYHGIPYEVVEVNPVSRKE--IKWSSYKKVPILRVESGGDGQQLVDSSVIISTLKTYL 76 (77)
T ss_pred EcCCCHHHHHHHHHHHHCCCceEEEECCchhHHH--HHHhCCCccCEEEECCCCCccEEEcHHHHHHHHHHHc
Confidence 3457999999999999999999999887643333 356999999999965 789999999999999865
No 58
>cd03077 GST_N_Alpha GST_N family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Alpha subfamily is composed of eukaryotic GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GSTA3-3 catalyzes the isomerization of intermediates in steroid hormone biosynthesis. GSTA4-4 preferentially catalyzes the
Probab=99.63 E-value=1.2e-15 Score=95.86 Aligned_cols=67 Identities=16% Similarity=0.212 Sum_probs=56.1
Q ss_pred CCCCChhHHHHHHHHHhcCCCceeEeccCCCCchhhhhh-----CCCCCccEEEeCCeeeeeHHHHHHHHHHhCC
Q 029887 16 ILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFMEI-----SPEGKVPVVKFDDKWVADSDVIVRIIEEKYP 85 (186)
Q Consensus 16 ~~~~sp~~~~vr~~L~~~gi~~~~~~~~~~~~~~~~~~~-----~p~~~vP~L~~~g~~l~eS~aI~~yL~~~~~ 85 (186)
.+..|+.++++|++|+++|++|+.+.++.. +++.+. .|.|++|+|+++|..++||.||++||+++++
T Consensus 6 ~~~~~~~~~~v~~~l~~~gi~~e~~~v~~~---~~~~~~~~~~~~~~g~vP~L~~~g~~l~ES~AI~~YL~~~~~ 77 (79)
T cd03077 6 YFNGRGRMESIRWLLAAAGVEFEEKFIESA---EDLEKLKKDGSLMFQQVPMVEIDGMKLVQTRAILNYIAGKYN 77 (79)
T ss_pred EeCCCChHHHHHHHHHHcCCCcEEEEeccH---HHHHhhccccCCCCCCCCEEEECCEEEeeHHHHHHHHHHHcC
Confidence 334678899999999999999999988753 223233 3589999999999999999999999999987
No 59
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=99.57 E-value=8.6e-15 Score=89.15 Aligned_cols=68 Identities=29% Similarity=0.434 Sum_probs=59.6
Q ss_pred CCCCCCChhHHHHHHHHHhcCCCceeEeccCCCCch-hhhhhCCCCCccEEEeCCeeeeeHHHHHHHHH
Q 029887 14 PDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQ-WFMEISPEGKVPVVKFDDKWVADSDVIVRIIE 81 (186)
Q Consensus 14 ~~~~~~sp~~~~vr~~L~~~gi~~~~~~~~~~~~~~-~~~~~~p~~~vP~L~~~g~~l~eS~aI~~yL~ 81 (186)
++.+..||+|+++|++|+++|++|+.+.++..+... ++.+.+|.+++|+|+++|..++||.+|++||+
T Consensus 3 ly~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~es~~I~~yl~ 71 (71)
T cd00570 3 LYYFPGSPRSLRVRLALEEKGLPYELVPVDLGEGEQEEFLALNPLGKVPVLEDGGLVLTESLAILEYLA 71 (71)
T ss_pred EEeCCCCccHHHHHHHHHHcCCCcEEEEeCCCCCCCHHHHhcCCCCCCCEEEECCEEEEcHHHHHHHhC
Confidence 345567999999999999999999999998765433 48888999999999999999999999999984
No 60
>COG0435 ECM4 Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=2.2e-14 Score=106.83 Aligned_cols=174 Identities=18% Similarity=0.313 Sum_probs=119.5
Q ss_pred cccCCCCCCCChhHHHHHHHHHhcCCC-c-eeEecc--CCCC-----ch-----------------hhhhhCC----CCC
Q 029887 10 AVGAPDILGDCPFSQRALLTLEEKKVP-Y-KRHLIN--ISDK-----PQ-----------------WFMEISP----EGK 59 (186)
Q Consensus 10 ~~~~~~~~~~sp~~~~vr~~L~~~gi~-~-~~~~~~--~~~~-----~~-----------------~~~~~~p----~~~ 59 (186)
++..+|....|||++|..+.=..||++ . ...-++ +.++ ++ -|....| .-+
T Consensus 50 GRYhLYvslaCPWAHRTLI~R~LkgLE~~Isvsvv~~~m~~~GW~F~~~~~g~t~dpl~g~~~L~~~Y~~adP~YsgRvT 129 (324)
T COG0435 50 GRYHLYVSLACPWAHRTLIFRALKGLEPVISVSVVHPLMDENGWTFDPEFPGATGDPLYGIERLSQLYTRADPDYSGRVT 129 (324)
T ss_pred CeEEEEEEecCchHHHHHHHHHHhcccccceEEEecccccCCCceEcCCCCCCCCCcccchhHHHHHHhhcCCCCCCcee
Confidence 444667777999999999999999985 2 222222 2110 00 1222223 237
Q ss_pred ccEEEeCC---eeeeeHHHHHHHHHHhCCC-----CCCCCCh---HHHhhccccchHHHHhhcCC------CCCchHHHH
Q 029887 60 VPVVKFDD---KWVADSDVIVRIIEEKYPE-----PSLTNPP---EFASLGSKIFPSFVNFLKSK------DPNDGTEQA 122 (186)
Q Consensus 60 vP~L~~~g---~~l~eS~aI~~yL~~~~~~-----~~l~~~~---~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~ 122 (186)
||+|.|.. .+=-||..|++-+...|.. .++.|.. +.+.+++|+...+..-.+.. ++-+++-+.
T Consensus 130 VPVLwDk~~~tIVnNES~eIirm~N~aFde~~~~~~dlyP~~Lr~eId~~n~~Iy~~vNNGVYk~GFA~tq~aYeea~~~ 209 (324)
T COG0435 130 VPVLWDKKTQTIVNNESAEIIRMFNSAFDEFGASAVDLYPEALRTEIDELNKWIYDTVNNGVYKAGFATTQEAYEEAVKK 209 (324)
T ss_pred EEEEEecCCCeeecCCcHHHHHHHHHHHHHHhhhccccCCHHHHHHHHHHHhhhcccccCceeeecccchHHHHHHHHHH
Confidence 89999853 5667999999999876653 3567754 45667888887776543331 222444566
Q ss_pred HHHHHHHHHHHHhhCCCCcccCCCCChhHHHhhhHHHHHHHHhhhccCCCC--Cccchhhhcccc
Q 029887 123 LLEELKALDEHLKTHGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTV--PESLAHVHGYTK 185 (186)
Q Consensus 123 ~~~~l~~le~~L~~~~~~yl~G~~~t~aDi~~~~~l~~~~~~~~~~~~~~~--~~~~p~l~~w~~ 185 (186)
+-+.|+.+|+.|+++ .|++|+++|-||+.+|+.|.++...-..+.+... ..+||+|..|.+
T Consensus 210 lF~~Ld~lE~~L~~~--ryl~Gd~lTEAD~RLftTlvRFD~VYvgHFKCN~~rI~dypnL~~yLr 272 (324)
T COG0435 210 LFEALDKLEQILSER--RYLTGDQLTEADIRLFTTLVRFDPVYVGHFKCNLRRIRDYPNLWGYLR 272 (324)
T ss_pred HHHHHHHHHHHhhcC--eeeccccchHhhhhhhheeEeecceEEeeeecccchhhcCchHHHHHH
Confidence 777899999999987 9999999999999999999987765444433332 466999999875
No 61
>cd03079 GST_N_Metaxin2 GST_N family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=99.44 E-value=5.3e-13 Score=82.07 Aligned_cols=62 Identities=24% Similarity=0.370 Sum_probs=51.6
Q ss_pred CCCCChhHHHHHHHHHhcCCCceeEeccCCCCchhhhhhCCCCCccEEEeCCeeeeeHHHHHHHHHHh
Q 029887 16 ILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFMEISPEGKVPVVKFDDKWVADSDVIVRIIEEK 83 (186)
Q Consensus 16 ~~~~sp~~~~vr~~L~~~gi~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~g~~l~eS~aI~~yL~~~ 83 (186)
++..+++|.|++++|++.|++|+.+.+.. .+ ..+|.|+||+|+++|.+++||.+|+.||.++
T Consensus 13 ~~~~~~~~~kv~~~L~elglpye~~~~~~---~~---~~~P~GkVP~L~~dg~vI~eS~aIl~yL~~~ 74 (74)
T cd03079 13 LLPDNASCLAVQTFLKMCNLPFNVRCRAN---AE---FMSPSGKVPFIRVGNQIVSEFGPIVQFVEAK 74 (74)
T ss_pred ecCCCCCHHHHHHHHHHcCCCcEEEecCC---cc---ccCCCCcccEEEECCEEEeCHHHHHHHHhcC
Confidence 45578999999999999999999884321 11 2567899999999999999999999999864
No 62
>cd03198 GST_C_CLIC GST_C family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin, and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division, and apoptosis. They can exist in both water-soluble and membrane-bound states and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and adopts a fold similar to GSTs, containing an N-terminal domain with a thioredoxin fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. T
Probab=99.44 E-value=3.8e-13 Score=92.27 Aligned_cols=92 Identities=29% Similarity=0.554 Sum_probs=73.3
Q ss_pred HHhhccccchHHHHhhcCC--CCCchHHHHHHHHHHHHHHHHhh--------------CCCCcccCCCCChhHHHhhhHH
Q 029887 95 FASLGSKIFPSFVNFLKSK--DPNDGTEQALLEELKALDEHLKT--------------HGGPFIAGEKVTAVDLSLAPKL 158 (186)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~le~~L~~--------------~~~~yl~G~~~t~aDi~~~~~l 158 (186)
...+.+.+++.|..++..+ +..+...+.+.+.|..||+.|++ .+++|++|+++|+|||.+++.+
T Consensus 4 ~~~~~~~~f~~~~~~~~~~~~~~~e~~~~~l~~~L~~ld~~L~~~~~~~~~~~~~~~~~~~~fL~Gd~fTlADi~l~p~L 83 (134)
T cd03198 4 SNTAGEDIFAKFSAYIKNSNPALNENLEKGLLKALKKLDDYLNSPLPDEIDSAEDEGVSQRKFLDGDELTLADCNLLPKL 83 (134)
T ss_pred hhhhHHHHHHHHHHHHcCCChhhhHHHHHHHHHHHHHHHHHHccCccccccccccccccCCCCCCCCCCCHHHHHHHHHH
Confidence 3456778899999998875 33466778899999999999987 2358999999999999999999
Q ss_pred HHHHHHhhhccCCCCCccchhhhccccC
Q 029887 159 YHLQVALEHFKQWTVPESLAHVHGYTKV 186 (186)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~p~l~~w~~~ 186 (186)
.++..+.....++...+.+|+|.+|++|
T Consensus 84 ~~~~~~~~~~~g~~i~~~~P~L~aw~~r 111 (134)
T cd03198 84 HIVKVVAKKYRNFEIPADLTGLWRYLKN 111 (134)
T ss_pred HHHHHHHHhhcCCCccccCHHHHHHHHH
Confidence 8886544333455556889999999875
No 63
>KOG2903 consensus Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=1.2e-13 Score=102.01 Aligned_cols=176 Identities=18% Similarity=0.251 Sum_probs=119.0
Q ss_pred cccCCCCCCCChhHHHHHHHHHhcCCC----ceeEeccCCCC-----c-------------------------hhhhhhC
Q 029887 10 AVGAPDILGDCPFSQRALLTLEEKKVP----YKRHLINISDK-----P-------------------------QWFMEIS 55 (186)
Q Consensus 10 ~~~~~~~~~~sp~~~~vr~~L~~~gi~----~~~~~~~~~~~-----~-------------------------~~~~~~~ 55 (186)
++..+|+...|||++|..+.+..+|++ +-.+.--..++ + +-|....
T Consensus 36 gryhLYvslaCPWAhRtLi~r~LKGL~~~i~~s~v~~~~d~~gW~F~~~~~~~nDs~~l~~~~d~~~g~k~l~elY~~~~ 115 (319)
T KOG2903|consen 36 GRYHLYVSLACPWAHRTLIVRALKGLEPAIGVSVVHWHLDDKGWRFLDEHIIINDSERLGVTPDPLNGAKRLRELYYIAS 115 (319)
T ss_pred ceEEEEEeccCcHHHHHHHHHHHcCccccceeEEeccccCCCcccCCCcccCCCchhcccCCCcccccchhHHHHHhhcC
Confidence 555677778999999999999999974 33332201110 0 0011112
Q ss_pred CC----CCccEEEeCC---eeeeeHHHHHHHHHHhC---------CCCCCCCChHHH---hhccccchHHHHhhcC----
Q 029887 56 PE----GKVPVVKFDD---KWVADSDVIVRIIEEKY---------PEPSLTNPPEFA---SLGSKIFPSFVNFLKS---- 112 (186)
Q Consensus 56 p~----~~vP~L~~~g---~~l~eS~aI~~yL~~~~---------~~~~l~~~~~~~---~~~~~~~~~~~~~~~~---- 112 (186)
|. -+||||-|-. .+=-||..|++.+.+.| +.-.|.|+.-++ ..++|++..+..-...
T Consensus 116 p~Y~grfTVPVLWD~k~ktIVnNES~eIIr~fNs~f~ef~~~~e~~~lDL~P~~L~~~Ide~N~wvy~~INNGVYk~GFA 195 (319)
T KOG2903|consen 116 PNYTGRFTVPVLWDLKTKTIVNNESSEIIRMFNSAFDEFNGIAENPVLDLYPSSLRAQIDETNSWVYDKINNGVYKCGFA 195 (319)
T ss_pred CCCCceEEEEEEEccccceeecCchHHHHHHHhhhhhhhhccccCCccccCCHHHHHHHhhhhceecccccCceeeeccc
Confidence 32 2699998753 56679999999999332 233577766444 4678888777643322
Q ss_pred --CCCCchHHHHHHHHHHHHHHHHhhCCCCcccCCCCChhHHHhhhHHHHHHHHhhhccCCC---CCccchhhhcccc
Q 029887 113 --KDPNDGTEQALLEELKALDEHLKTHGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWT---VPESLAHVHGYTK 185 (186)
Q Consensus 113 --~~~~~~~~~~~~~~l~~le~~L~~~~~~yl~G~~~t~aDi~~~~~l~~~~~~~~~~~~~~---~~~~~p~l~~w~~ 185 (186)
.+..+..-..+-+.|+.+|+.|+++-+.|++|+++|.|||.+|+.+-++...-..+.+.. +..+||+|..|.+
T Consensus 196 ~~~e~Ye~~V~~lfe~LDr~E~vL~~~~~~f~~G~~LTeaDirLy~TiIRFD~VY~~hFKCn~~~ir~~Yp~l~~~lk 273 (319)
T KOG2903|consen 196 EKQEAYEEEVNQLFEALDRCEDVLGKNRKYFLCGDTLTEADIRLYTTIIRFDEVYVQHFKCNKKTIRDEYPNLHNWLK 273 (319)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHhcccceEeeccccchhheeeeeeEEeehhhhheeeecchhhhhccCcHHHHHHH
Confidence 333355567778889999999999855599999999999999998887665433333322 3568999999975
No 64
>cd03201 GST_C_DHAR GST_C family, Dehydroascorbate Reductase (DHAR) subfamily; composed of plant-specific DHARs, monomeric enzymes catalyzing the reduction of DHA into ascorbic acid (AsA) using glutathione as the reductant. DHAR allows plants to recycle oxidized AsA before it is lost. AsA serves as a cofactor of violaxanthin de-epoxidase in the xanthophyll cycle and as an antioxidant in the detoxification of reactive oxygen species. Because AsA is the major reductant in plants, DHAR serves to regulate their redox state. It has been suggested that a significant portion of DHAR activity is plastidic, acting to reduce the large amounts of ascorbate oxidized during hydrogen peroxide scavenging by ascorbate peroxidase. DHAR contains a conserved cysteine in its active site and in addition to its reductase activity, shows thiol transferase activity similar to glutaredoxins.
Probab=99.40 E-value=1.1e-12 Score=89.14 Aligned_cols=94 Identities=71% Similarity=1.169 Sum_probs=76.1
Q ss_pred ChHHHhhccccchHHHHhhcCCCCCchHHHHHHHHHHHHHHHHhhCCCCcccCCCCChhHHHhhhHHHHHHHHhhhccCC
Q 029887 92 PPEFASLGSKIFPSFVNFLKSKDPNDGTEQALLEELKALDEHLKTHGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQW 171 (186)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~yl~G~~~t~aDi~~~~~l~~~~~~~~~~~~~ 171 (186)
+.+...+.+.+++.+..++..+...+...+.+.+.+..||+.|++. ++|++|+++|+|||.+++++.++........++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Le~~L~~~-~~fl~Gd~~TlADi~l~~~l~~l~~~~~~~~~~ 82 (121)
T cd03201 4 PPEKASVGSKIFSTFVGFLKSKDSNDGTEQALLDELEALEDHLKEN-GPFINGEKISAVDLSLAPKLYHLEIALGHYKNW 82 (121)
T ss_pred cHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHhcC-CCccCCCCCCHHhHHHHHHHHHHHHHHHHhcCC
Confidence 4566777888889999988877766777788999999999999852 589999999999999999988877544444455
Q ss_pred CCCccchhhhccccC
Q 029887 172 TVPESLAHVHGYTKV 186 (186)
Q Consensus 172 ~~~~~~p~l~~w~~~ 186 (186)
...+.+|+|.+|++|
T Consensus 83 ~~~~~~P~l~~w~~r 97 (121)
T cd03201 83 SVPESLTSVKSYMKA 97 (121)
T ss_pred CCcccchHHHHHHHH
Confidence 445899999999874
No 65
>PF13410 GST_C_2: Glutathione S-transferase, C-terminal domain; PDB: 4DEJ_H 3IC8_A 2JL4_A 2V6K_B 3CBU_B 1JLW_B 3F6D_B 3G7I_A 3F63_A 3G7J_B ....
Probab=99.31 E-value=2.2e-12 Score=78.76 Aligned_cols=65 Identities=25% Similarity=0.498 Sum_probs=53.2
Q ss_pred chHHHHHHHHHHHHHHHHhhCCCCcccCCCCChhHHHhhhHHHHHHHHhhhccCCCCCccchhhhccccC
Q 029887 117 DGTEQALLEELKALDEHLKTHGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYTKV 186 (186)
Q Consensus 117 ~~~~~~~~~~l~~le~~L~~~~~~yl~G~~~t~aDi~~~~~l~~~~~~~~~~~~~~~~~~~p~l~~w~~~ 186 (186)
++..+.+.+.++.+|+.|+.+ +|++|+++|+|||.+++++.++..... +....+.+|+|.+|++|
T Consensus 5 ~~~~~~~~~~l~~le~~L~~~--~fl~G~~~s~aD~~l~~~l~~~~~~~~---~~~~~~~~p~l~~w~~r 69 (69)
T PF13410_consen 5 ERARAQLEAALDALEDHLADG--PFLFGDRPSLADIALAPFLWRLRFVGP---DFDLLEAYPNLRAWYER 69 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHTTS--SBTTBSS--HHHHHHHHHHHHHHHCTH---TCCHHTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhC--CCCCCCCCCHHHHHHHHHHHHHHHhCc---CcCccccCHHHHHHHhC
Confidence 456788899999999999987 799999999999999999999987533 22344899999999975
No 66
>cd03184 GST_C_Omega GST_C family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a re
Probab=99.19 E-value=9.5e-11 Score=79.85 Aligned_cols=81 Identities=19% Similarity=0.298 Sum_probs=59.7
Q ss_pred HHHhhcCCCCCchHHHHHHHHHHHHHHHHhhCCCCcccCCCCChhHHHhhhHHHHHHHHhhhccCCCCCccchhhhcccc
Q 029887 106 FVNFLKSKDPNDGTEQALLEELKALDEHLKTHGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYTK 185 (186)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~yl~G~~~t~aDi~~~~~l~~~~~~~~~~~~~~~~~~~p~l~~w~~ 185 (186)
+...+..++..+...+.+.+.+..+|+.|++++++|++|+++|+||+++++++.++.............+.+|+|++|++
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~yl~G~~~t~aDi~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~w~~ 99 (124)
T cd03184 20 FYKLLGAPSDREEKKAELRSALENLEEELTKRGTPFFGGDSPGMVDYMIWPWFERLEALKLLLGYEFPLDRFPKLKKWMD 99 (124)
T ss_pred HHHHHhccccchhhHHHHHHHHHHHHHHHHhcCCCCcCCCCccHHHHHhhHHHHHHHHHHhhccccCCcccChHHHHHHH
Confidence 33333333445677789999999999999875569999999999999999999887654322111123478999999987
Q ss_pred C
Q 029887 186 V 186 (186)
Q Consensus 186 ~ 186 (186)
+
T Consensus 100 r 100 (124)
T cd03184 100 A 100 (124)
T ss_pred H
Confidence 4
No 67
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=99.16 E-value=1.2e-10 Score=73.12 Aligned_cols=64 Identities=22% Similarity=0.349 Sum_probs=56.1
Q ss_pred CCChhHHHHHHHHHhcCCCceeEeccCCCCchhhhhhCCCCCccEEEeCCeeeeeHHHHHHHHH
Q 029887 18 GDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFMEISPEGKVPVVKFDDKWVADSDVIVRIIE 81 (186)
Q Consensus 18 ~~sp~~~~vr~~L~~~gi~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~g~~l~eS~aI~~yL~ 81 (186)
.+||+|.+++.+|...|++|+.+.++.....+++...++..++|++..+|..+.++..|..||+
T Consensus 16 ~~Cp~C~~ak~~L~~~gi~y~~idi~~~~~~~~~~~~~g~~~vP~i~i~g~~igG~~~l~~~l~ 79 (79)
T TIGR02190 16 PGCPFCAKAKATLKEKGYDFEEIPLGNDARGRSLRAVTGATTVPQVFIGGKLIGGSDELEAYLA 79 (79)
T ss_pred CCCHhHHHHHHHHHHcCCCcEEEECCCChHHHHHHHHHCCCCcCeEEECCEEEcCHHHHHHHhC
Confidence 5899999999999999999999988765444556667788899999999999999999999984
No 68
>cd03078 GST_N_Metaxin1_like GST_N family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins including Tom37 from fungi. Mammalian metaxin (or metaxin 1) and the fungal protein Tom37 are components of preprotein import complexes of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals.
Probab=99.16 E-value=1.8e-10 Score=71.07 Aligned_cols=72 Identities=19% Similarity=0.181 Sum_probs=58.0
Q ss_pred eeehhhhcccCCCCCCCChhHHHHHHHHHhcCCCceeEeccCCCCchhhhhhCCCCCccEEEeCCeeeeeHHHHHHHHHH
Q 029887 3 VEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFMEISPEGKVPVVKFDDKWVADSDVIVRIIEE 82 (186)
Q Consensus 3 ~~~~~~~~~~~~~~~~~sp~~~~vr~~L~~~gi~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~g~~l~eS~aI~~yL~~ 82 (186)
++||.+.. .....+.||+|.++.+.|+.+|++|+.+...- + ...|.|++|+|+++|..+.+|..|++||.+
T Consensus 1 ~~L~~~~~--~~g~ps~sp~clk~~~~Lr~~~~~~~v~~~~n----~---~~sp~gkLP~l~~~~~~i~d~~~Ii~~L~~ 71 (73)
T cd03078 1 MELHVWGG--DWGLPSVDPECLAVLAYLKFAGAPLKVVPSNN----P---WRSPTGKLPALLTSGTKISGPEKIIEYLRK 71 (73)
T ss_pred CEEEEECC--CCCCCcCCHHHHHHHHHHHcCCCCEEEEecCC----C---CCCCCCccCEEEECCEEecChHHHHHHHHH
Confidence 35666632 24557799999999999999999998874331 1 346899999999999999999999999987
Q ss_pred h
Q 029887 83 K 83 (186)
Q Consensus 83 ~ 83 (186)
+
T Consensus 72 ~ 72 (73)
T cd03078 72 Q 72 (73)
T ss_pred c
Confidence 4
No 69
>PF14497 GST_C_3: Glutathione S-transferase, C-terminal domain; PDB: 3AY8_A 2UZ8_B 1V2A_C 2HNL_A 2YV9_B 3H1N_A 3FR6_A 1Q4J_B 1PA3_B 1OKT_B ....
Probab=99.14 E-value=5.8e-11 Score=77.70 Aligned_cols=64 Identities=28% Similarity=0.447 Sum_probs=50.6
Q ss_pred CchHHHHHHHHHHHHHHHHhhCCCCcccCCCCChhHHHhhhHHHHHHHHhhhccCCCCCccchhhhccccC
Q 029887 116 NDGTEQALLEELKALDEHLKTHGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYTKV 186 (186)
Q Consensus 116 ~~~~~~~~~~~l~~le~~L~~~~~~yl~G~~~t~aDi~~~~~l~~~~~~~~~~~~~~~~~~~p~l~~w~~~ 186 (186)
.+...+.+.+.+..+|+.|+.++|+||+|++||+||+.+|+.|..+... ..+ +++|+|.+|++|
T Consensus 33 ~~~~~~~~~~~l~~l~~~L~~~~~~~l~G~~~T~AD~~v~~~l~~~~~~--~~~-----~~~p~L~~w~~r 96 (99)
T PF14497_consen 33 GDFSREELPKALKILEKHLAERGGDFLVGDKPTLADIAVFGFLASLRWA--DFP-----KDYPNLVRWYER 96 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSSSSSSSSS--HHHHHHHHHHHHHHCC--HHT-----TTCHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHcCCCeeecCCCCCHHHHHHHHHHHHHhhc--ccc-----cccHHHHHHHHh
Confidence 3556788899999999999999777999999999999999988666522 111 589999999875
No 70
>KOG3027 consensus Mitochondrial outer membrane protein Metaxin 2, Metaxin 1-binding protein [Cell wall/membrane/envelope biogenesis; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.13 E-value=4.9e-10 Score=80.46 Aligned_cols=159 Identities=18% Similarity=0.280 Sum_probs=111.2
Q ss_pred CCChhHHHHHHHHHhcCCCceeEeccCCCCchhhhhhCCCCCccEEEeCCeeeeeHHHHHHHHHHhCCC-CCCCCChHHH
Q 029887 18 GDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFMEISPEGKVPVVKFDDKWVADSDVIVRIIEEKYPE-PSLTNPPEFA 96 (186)
Q Consensus 18 ~~sp~~~~vr~~L~~~gi~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~g~~l~eS~aI~~yL~~~~~~-~~l~~~~~~~ 96 (186)
+...-|..|...|+.+++||.++.-+ ..+| ++|.|++|.|..+.+.++|-.+|..++..+--. .+....++++
T Consensus 32 ~d~ascLAVqtfLrMcnLPf~v~~~~----Naef--mSP~G~vPllr~g~~~~aef~pIV~fVeak~~~l~s~lsE~qka 105 (257)
T KOG3027|consen 32 PDNASCLAVQTFLRMCNLPFNVRQRA----NAEF--MSPGGKVPLLRIGKTLFAEFEPIVDFVEAKGVTLTSWLSEDQKA 105 (257)
T ss_pred ccchhHHHHHHHHHHcCCCceeeecC----Cccc--cCCCCCCceeeecchhhhhhhHHHHHHHHhccchhhhhhhHHHH
Confidence 34555999999999999999887443 2334 579999999999999999999999999987643 2344455544
Q ss_pred hhcc-------------------------------------ccchHHHHhhcC-------------CCCCchHHHHHHHH
Q 029887 97 SLGS-------------------------------------KIFPSFVNFLKS-------------KDPNDGTEQALLEE 126 (186)
Q Consensus 97 ~~~~-------------------------------------~~~~~~~~~~~~-------------~~~~~~~~~~~~~~ 126 (186)
.+.. |-.+.+..+.+. ....+...+++.++
T Consensus 106 dmra~vslVen~~t~aEl~~s~~de~ty~~vT~~R~gs~ypWPLs~i~~f~Krr~~~r~lk~~~W~~~~~DqVie~vdkc 185 (257)
T KOG3027|consen 106 DMRAYVSLVENLLTTAELYVSWNDEETYDEVTALRYGSVYPWPLSHILPFVKRRKALRELKVYDWDDKTMDQVIEQVDKC 185 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhccCCCCCCcHHHHHHHHHHHHHHHHHhhcCcccccHHHHHHHHHHH
Confidence 3211 111111111111 11224556777888
Q ss_pred HHHHHHHHhhCCCCcccCCCCChhHHHhhhHHHHHHHHhhhccCCC---CCccchhhhccccC
Q 029887 127 LKALDEHLKTHGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWT---VPESLAHVHGYTKV 186 (186)
Q Consensus 127 l~~le~~L~~~~~~yl~G~~~t~aDi~~~~~l~~~~~~~~~~~~~~---~~~~~p~l~~w~~~ 186 (186)
...|+..|+++ +||.|+.||-+|..+|++++.+.+.. ++.-. ..++|++|.++.+|
T Consensus 186 ~~aLsa~L~~q--~yf~g~~P~elDAlvFGHlytilTt~--Lpn~ela~~lkkys~Llefcrr 244 (257)
T KOG3027|consen 186 CRALSAQLGSQ--PYFTGDQPTELDALVFGHLYTILTTR--LPNMELANILKKYSNLLEFCRR 244 (257)
T ss_pred HHHHHHHhcCC--CccCCCCccHHHHHHHhhhHHhhhhc--CCcHHHHHHHHHhHHHHHHHHH
Confidence 99999999976 99999999999999999999876542 22222 25778888776653
No 71
>PF00043 GST_C: Glutathione S-transferase, C-terminal domain; InterPro: IPR004046 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of cephalopods is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold. Each monomer is composed of a distinct N-terminal sub-domain, which adopts the thioredoxin fold, and a C-terminal all-helical sub-domain. This entry is the C-terminal domain.; PDB: 3UAP_A 3UAR_A 3QAV_A 3QAW_A 1Y6E_A 1U88_B 4AI6_B 1UA5_A 4AKH_A 3QMZ_S ....
Probab=99.11 E-value=1.3e-10 Score=75.19 Aligned_cols=63 Identities=25% Similarity=0.426 Sum_probs=50.7
Q ss_pred hHHHHHHHHHHHHHHHHhhCCCCcccCCCCChhHHHhhhHHHHHHHHhhhccCCCCCccchhhhccccC
Q 029887 118 GTEQALLEELKALDEHLKTHGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYTKV 186 (186)
Q Consensus 118 ~~~~~~~~~l~~le~~L~~~~~~yl~G~~~t~aDi~~~~~l~~~~~~~~~~~~~~~~~~~p~l~~w~~~ 186 (186)
.....+.+.|..+|+.|+. ++|++|+++|+||+.+++++.++........ .+++|+|.+|++|
T Consensus 28 ~~~~~~~~~l~~le~~l~~--~~~l~G~~~t~ADi~~~~~~~~~~~~~~~~~----~~~~P~l~~w~~~ 90 (95)
T PF00043_consen 28 EARAKVPRYLEVLEKRLKG--GPYLVGDKLTIADIALFPMLDWLERLGPDFL----FEKFPKLKKWYER 90 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHT--SSSSSBSS-CHHHHHHHHHHHHHHHHTTTTT----HTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcC--CCeeeccCCchhHHHHHHHHHHHHHhCCCcc----cccCHHHHHHHHH
Confidence 4456778889999999994 5999999999999999999998876543321 2789999999874
No 72
>cd03202 GST_C_etherase_LigE GST_C family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=98.97 E-value=1.2e-09 Score=74.48 Aligned_cols=65 Identities=15% Similarity=0.228 Sum_probs=53.2
Q ss_pred CchHHHHHHHHHHHHHHHHhhCCCCcccCCCCChhHHHhhhHHHHHHHHhhhccCCCCCccchhhhccccC
Q 029887 116 NDGTEQALLEELKALDEHLKTHGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYTKV 186 (186)
Q Consensus 116 ~~~~~~~~~~~l~~le~~L~~~~~~yl~G~~~t~aDi~~~~~l~~~~~~~~~~~~~~~~~~~p~l~~w~~~ 186 (186)
.+...+.+.+.++.+|+.|+++ +|++|+++|+||+++++++.+.... .+....+.+|+|.+|++|
T Consensus 56 ~~~~~~~~~~~l~~l~~~L~~~--~fl~Gd~~t~AD~~l~~~l~~~~~~----~~~~~~~~~p~l~~W~~r 120 (124)
T cd03202 56 REAALANFRAALEPLRATLKGQ--PFLGGAAPNYADYIVFGGFQWARIV----SPFPLLEEDDPVYDWFER 120 (124)
T ss_pred hHHHHHHHHHHHHHHHHHHcCC--CccCCCCCchhHHHHHHHHHHHHHc----CcccccccCChHHHHHHH
Confidence 3567788999999999999864 8999999999999999998887642 223334789999999875
No 73
>cd03200 GST_C_JTV1 GST_C family, JTV-1 subfamily; composed of uncharacterized proteins with similarity to the translation product of the human JTV-1 gene. Human JTV-1, a gene of unknown function, initiates within the human PMS2 gene promoter, but is transcribed from the opposite strand. PMS2 encodes a protein involved in DNA mismatch repair and is mutated in a subset of patients with hereditary nonpolyposis colon cancer. It is unknown whether the expression of JTV-1 affects that of PMS2, or vice versa, as a result of their juxtaposition. JTV-1 is up-regulated while PMS2 is down-regulated in tumor cell spheroids that show increased resistance to anticancer cytotoxic drugs compared with tumor cell monolayers indicating that suppressed DNA mismatch repair may be a mechanism for multicellular resistance to alkylating agents.
Probab=98.97 E-value=9.9e-10 Score=71.47 Aligned_cols=90 Identities=17% Similarity=0.239 Sum_probs=61.1
Q ss_pred HHHHHHhCCCCCCCCCh--HHHhhccccchHHHHhhcCCCCCchHHHHHHHHHHHHHHHHhhCCCCcccCCCCChhHHHh
Q 029887 77 VRIIEEKYPEPSLTNPP--EFASLGSKIFPSFVNFLKSKDPNDGTEQALLEELKALDEHLKTHGGPFIAGEKVTAVDLSL 154 (186)
Q Consensus 77 ~~yL~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~yl~G~~~t~aDi~~ 154 (186)
++||++.- ++.|.+ +..++-.|+......+.. ....++.+.+..+|+.|+++ +|++|+++|+|||++
T Consensus 1 ~r~~~~~~---~~~~~~~~~~~~vd~~~d~~~~~l~~------~~~~~~~~~l~~le~~L~~~--~fl~Gd~~tiADi~l 69 (96)
T cd03200 1 ARFLYRLL---GPAPNAPNAATNIDSWVDTAIFQLAE------GSSKEKAAVLRALNSALGRS--PWLVGSEFTVADIVS 69 (96)
T ss_pred CchHHHHh---cccCCCchHHHHHHHHHHHHHHHHhc------CCHHHHHHHHHHHHHHHcCC--CccCCCCCCHHHHHH
Confidence 47888872 355543 445555555422112221 24466678899999999876 899999999999999
Q ss_pred hhHHHHHHHHhhhccCCCCCccchhhhccccC
Q 029887 155 APKLYHLQVALEHFKQWTVPESLAHVHGYTKV 186 (186)
Q Consensus 155 ~~~l~~~~~~~~~~~~~~~~~~~p~l~~w~~~ 186 (186)
++.+.+. +.. .+.+|+|.+|++|
T Consensus 70 ~~~l~~~--------~~~-~~~~p~l~~w~~r 92 (96)
T cd03200 70 WCALLQT--------GLA-SAAPANVQRWLKS 92 (96)
T ss_pred HHHHHHc--------ccc-cccChHHHHHHHH
Confidence 9887532 111 2679999999875
No 74
>cd03210 GST_C_Pi GST_C family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an incre
Probab=98.96 E-value=1e-09 Score=74.94 Aligned_cols=64 Identities=22% Similarity=0.309 Sum_probs=50.4
Q ss_pred hHHHHHHHHHHHHHHHHhhC-CCCcccCCCCChhHHHhhhHHHHHHHHhhhccCCCCCccchhhhccccC
Q 029887 118 GTEQALLEELKALDEHLKTH-GGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYTKV 186 (186)
Q Consensus 118 ~~~~~~~~~l~~le~~L~~~-~~~yl~G~~~t~aDi~~~~~l~~~~~~~~~~~~~~~~~~~p~l~~w~~~ 186 (186)
...+.+.+.+..||+.|+++ +++|++|+++|+||+++++.+.++..... ...+.+|+|.+|++|
T Consensus 35 ~~~~~~~~~l~~le~~L~~~~~~~~l~G~~~T~ADi~l~~~~~~~~~~~~-----~~~~~~P~l~~~~~r 99 (126)
T cd03210 35 DYIKDLPEQLKPFEKLLSKNNGKGFIVGDKISFADYNLFDLLDIHLVLAP-----GCLDAFPLLKAFVER 99 (126)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCeeeCCCccHHHHHHHHHHHHHHHhCh-----HhhhcChHHHHHHHH
Confidence 44566788999999999875 46899999999999999998877753211 123789999999874
No 75
>cd03196 GST_C_5 GST_C family, unknown subfamily 5; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=98.94 E-value=1.7e-09 Score=72.69 Aligned_cols=66 Identities=17% Similarity=0.304 Sum_probs=51.5
Q ss_pred CchHHHHHHHHHHHHHHHHhhCCCCcccCCCCChhHHHhhhHHHHHHHHhhhccCCCCCccchhhhccccC
Q 029887 116 NDGTEQALLEELKALDEHLKTHGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYTKV 186 (186)
Q Consensus 116 ~~~~~~~~~~~l~~le~~L~~~~~~yl~G~~~t~aDi~~~~~l~~~~~~~~~~~~~~~~~~~p~l~~w~~~ 186 (186)
.+...+.+.+.+..+|+.|+++ +|++|+++|+|||++++.+.++.... ......+++|+|.+|+++
T Consensus 39 ~~~~~~~i~~~l~~le~~L~~~--~yl~Gd~~tlADi~l~~~l~~~~~~~---~~~~~~~~~P~L~~w~~r 104 (115)
T cd03196 39 EEEYRQQAEAFLKDLEARLQQH--SYLLGDKPSLADWAIFPFVRQFAHVD---PKWFDQSPYPRLRRWLNG 104 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHccC--CccCCCCccHHHHHHHHHHHHHHHhh---hcccCcccCHHHHHHHHH
Confidence 4456678899999999999865 89999999999999999887665321 111123789999999874
No 76
>cd00299 GST_C_family Glutathione S-transferase (GST) family, C-terminal alpha helical domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an activ
Probab=98.93 E-value=2e-09 Score=69.75 Aligned_cols=65 Identities=22% Similarity=0.419 Sum_probs=52.5
Q ss_pred chHHHHHHHHHHHHHHHHhhCCCCcccCCCCChhHHHhhhHHHHHHHHhhhccCCCCCccchhhhccccC
Q 029887 117 DGTEQALLEELKALDEHLKTHGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYTKV 186 (186)
Q Consensus 117 ~~~~~~~~~~l~~le~~L~~~~~~yl~G~~~t~aDi~~~~~l~~~~~~~~~~~~~~~~~~~p~l~~w~~~ 186 (186)
+...+.+.+.++.+|+.|+++ +|++|+++|+||+.+++++.++....... + ..+.+|+|.+|+++
T Consensus 35 ~~~~~~~~~~~~~l~~~L~~~--~~~~g~~~t~aDi~~~~~l~~~~~~~~~~-~--~~~~~p~l~~~~~~ 99 (100)
T cd00299 35 EEAREELAAALAALEKLLAGR--PYLAGDRFSLADIALAPVLARLDLLGPLL-G--LLDEYPRLAAWYDR 99 (100)
T ss_pred HHHHHHHHHHHHHHHHHHccC--CCCCCCCcCHHHHHHHHHHHHHHHhhhhh-h--hhccCccHHHHHHh
Confidence 345678899999999999865 89999999999999999999987643221 1 24789999999875
No 77
>cd03193 GST_C_Metaxin GST_C family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken, and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities. Other members are the cadmium-inducible
Probab=98.93 E-value=6.9e-10 Score=70.95 Aligned_cols=67 Identities=19% Similarity=0.203 Sum_probs=50.6
Q ss_pred hHHHHHHHHHHHHHHHHhhCCCCcccCCCCChhHHHhhhHHHHHHHHhhhccCC-CCCccchhhhccccC
Q 029887 118 GTEQALLEELKALDEHLKTHGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQW-TVPESLAHVHGYTKV 186 (186)
Q Consensus 118 ~~~~~~~~~l~~le~~L~~~~~~yl~G~~~t~aDi~~~~~l~~~~~~~~~~~~~-~~~~~~p~l~~w~~~ 186 (186)
...+++.+.++.+|+.|+++ +|++|+++|+|||++++++.++.......... ...+.+|+|.+|++|
T Consensus 19 ~~~~~~~~~l~~le~~L~~~--~yl~Gd~~t~aDi~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~~~~r 86 (88)
T cd03193 19 EIYSLAKKDLKALSDLLGDK--KFFFGDKPTSLDATVFGHLASILYAPLPNSALQLILKEYPNLVEYCER 86 (88)
T ss_pred HHHHHHHHHHHHHHHHhCCC--CccCCCCCCHHHHHHHHHHHHHHhcCCCChHHHHHHHhCcHHHHHHHH
Confidence 55678899999999999976 89999999999999999988775320000000 013679999999875
No 78
>cd03203 GST_C_Lambda GST_C family, Class Lambda subfamily; composed of plant-specific class Lambda GSTs. GSTs are cytosolic, usually dimeric, proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Lambda subfamily was recently discovered, together with dehydroascorbate reductases (DHARs), as two outlying groups of the GST superfamily in Arabidopsis thaliana, which contain conserved active site cysteines. Characterization of recombinant A. thaliana proteins show that Lambda class GSTs are monomeric, similar
Probab=98.93 E-value=2.3e-09 Score=72.58 Aligned_cols=66 Identities=18% Similarity=0.411 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHHHhh-CCCCcccCCCCChhHHHhhhHHHHHHHHhhhccCCCCCccchhhhccccC
Q 029887 120 EQALLEELKALDEHLKT-HGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYTKV 186 (186)
Q Consensus 120 ~~~~~~~l~~le~~L~~-~~~~yl~G~~~t~aDi~~~~~l~~~~~~~~~~~~~~~~~~~p~l~~w~~~ 186 (186)
.+.+.+.++.+|+.|++ .+++|++| ++|+|||++++++.++........+..+.+++|+|.+|+++
T Consensus 32 ~~~~~~~l~~Le~~L~~~~~~~fl~G-~~tlADi~l~~~~~~~~~~~~~~~~~~~~~~~P~l~~W~~~ 98 (120)
T cd03203 32 SAEAAAALDYIENALSKFDDGPFFLG-QFSLVDIAYVPFIERFQIFLSELFNYDITEGRPNLAAWIEE 98 (120)
T ss_pred hHHHHHHHHHHHHHHHhcCCCCCcCC-CccHHHHHHHHHHHHHHHHHHHhcCccccccCcHHHHHHHH
Confidence 34567788999999974 13589999 99999999999998776433333444445789999999864
No 79
>cd03182 GST_C_GTT2_like GST_C family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensiti
Probab=98.92 E-value=2.1e-09 Score=72.24 Aligned_cols=62 Identities=26% Similarity=0.418 Sum_probs=50.5
Q ss_pred hHHHHHHHHHHHHHHHHhhCCCCcccCCCCChhHHHhhhHHHHHHHHhhhccCCCCCccchhhhccccC
Q 029887 118 GTEQALLEELKALDEHLKTHGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYTKV 186 (186)
Q Consensus 118 ~~~~~~~~~l~~le~~L~~~~~~yl~G~~~t~aDi~~~~~l~~~~~~~~~~~~~~~~~~~p~l~~w~~~ 186 (186)
+..+.+.+.++.+|+.|+++ +|++|+++|+|||++++.+.++.. .+..+...+|+|.+|+++
T Consensus 49 ~~~~~l~~~l~~le~~L~~~--~~l~gd~~t~aDi~l~~~~~~~~~-----~~~~~~~~~p~l~~w~~~ 110 (117)
T cd03182 49 RSKARAADFLAYLDTRLAGS--PYVAGDRFTIADITAFVGLDFAKV-----VKLRVPEELTHLRAWYDR 110 (117)
T ss_pred HHHHHHHHHHHHHHHHhcCC--CcccCCCCCHHHHHHHHHhHHHHh-----cCCCCccccHHHHHHHHH
Confidence 45577889999999999865 899999999999999999987754 222334689999999874
No 80
>cd03190 GST_C_ECM4_like GST_C family, ECM4-like subfamily; composed of predominantly uncharacterized and taxonomically diverse proteins with similarity to the translation product of the Saccharomyces cerevisiae gene ECM4. ECM4, a gene of unknown function, is involved in cell surface biosynthesis and architecture. S. cerevisiae ECM4 mutants show increased amounts of the cell wall hexose, N-acetylglucosamine. More recently, global gene expression analysis shows that ECM4 is upregulated during genotoxic conditions and together with the expression profiles of 18 other genes could potentially differentiate between genotoxic and cytotoxic insults in yeast.
Probab=98.91 E-value=1.8e-09 Score=75.32 Aligned_cols=67 Identities=18% Similarity=0.331 Sum_probs=51.0
Q ss_pred hHHHHHHHHHHHHHHHHhhCCCCcccCCCCChhHHHhhhHHHHHHHHhhhcc--CCCCCccchhhhccccC
Q 029887 118 GTEQALLEELKALDEHLKTHGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFK--QWTVPESLAHVHGYTKV 186 (186)
Q Consensus 118 ~~~~~~~~~l~~le~~L~~~~~~yl~G~~~t~aDi~~~~~l~~~~~~~~~~~--~~~~~~~~p~l~~w~~~ 186 (186)
...+.+.+.|+.+|+.|+++ +|++|+++|+|||++++++.++........ +....+.+|+|.+|++|
T Consensus 37 ~~~~~l~~~l~~LE~~L~~~--~yl~Gd~~TlADi~l~~~l~~~~~~~~~~~~~~~~~~~~~P~L~~w~~r 105 (142)
T cd03190 37 EAVDELFEALDRLEELLSDR--RYLLGDRLTEADIRLFTTLIRFDAVYVQHFKCNLKRIRDYPNLWNYLRR 105 (142)
T ss_pred HHHHHHHHHHHHHHHHHccC--CeeeCCCccHHHHHHHHHHHHHHHHhhhhcccccchhhhCchHHHHHHH
Confidence 45578889999999999865 899999999999999999887654221111 12234689999999874
No 81
>cd03208 GST_C_Alpha GST_C family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Alpha subfamily is composed of vertebrate GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GS
Probab=98.90 E-value=2.6e-09 Score=74.07 Aligned_cols=60 Identities=17% Similarity=0.329 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHhhCCCCcccCCCCChhHHHhhhHHHHHHHHhhhccCCCCCccchhhhccccC
Q 029887 122 ALLEELKALDEHLKTHGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYTKV 186 (186)
Q Consensus 122 ~~~~~l~~le~~L~~~~~~yl~G~~~t~aDi~~~~~l~~~~~~~~~~~~~~~~~~~p~l~~w~~~ 186 (186)
.+.+.+..||+.|++++++|++|+++|+||+++++.+.++..... ...+.+|+|.+|++|
T Consensus 43 ~~~~~l~~lE~~L~~~~~~~l~G~~~T~ADi~l~~~l~~~~~~~~-----~~l~~~P~l~~~~~r 102 (137)
T cd03208 43 AKNRYFPVFEKVLKSHGQDFLVGNKLSRADIHLLEAILMVEELDP-----SLLSDFPLLQAFKTR 102 (137)
T ss_pred HHHHHHHHHHHHHHhCCCCeeeCCCCCHHHHHHHHHHHHHHHhch-----hhhccChHHHHHHHH
Confidence 457889999999986556899999999999999999988764221 123689999999864
No 82
>cd03204 GST_C_GDAP1 GST_C family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal thioredoxin-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=98.90 E-value=2.9e-09 Score=70.84 Aligned_cols=69 Identities=17% Similarity=0.244 Sum_probs=51.0
Q ss_pred chHHHHHHHHHHHHHHHHhhCC--------CCcccCCCCChhHHHhhhHHHHHHHHhhhccCCCCCccchhhhccccC
Q 029887 117 DGTEQALLEELKALDEHLKTHG--------GPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYTKV 186 (186)
Q Consensus 117 ~~~~~~~~~~l~~le~~L~~~~--------~~yl~G~~~t~aDi~~~~~l~~~~~~~~~~~~~~~~~~~p~l~~w~~~ 186 (186)
++....+.+.++.+|+.|+++. ++|++|+++|+|||++++.+.++.........+ ....+|+|.+|++|
T Consensus 28 ~~~~~~l~~~l~~LE~~L~~~~~~~~~~~~~~yL~Gd~~TlADi~l~~~l~~~~~~~~~~~~~-~~~~~P~l~~w~~r 104 (111)
T cd03204 28 KKILDELEMVLDQVEQELQRRKEETEEQKCQLWLCGDTFTLADISLGVTLHRLKFLGLSRRYW-GNGKRPNLEAYFER 104 (111)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCcccccccCCCccCCCCCCHHHHHHHHHHHHHHHcCcccccc-ccccChHHHHHHHH
Confidence 3456778899999999998642 259999999999999999998876421110000 03679999999875
No 83
>cd03186 GST_C_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=98.90 E-value=3.1e-09 Score=70.31 Aligned_cols=63 Identities=25% Similarity=0.424 Sum_probs=49.6
Q ss_pred chHHHHHHHHHHHHHHHHhhCCCCcccCCCCChhHHHhhhHHHHHHHHhhhccCCCCCccchhhhccccC
Q 029887 117 DGTEQALLEELKALDEHLKTHGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYTKV 186 (186)
Q Consensus 117 ~~~~~~~~~~l~~le~~L~~~~~~yl~G~~~t~aDi~~~~~l~~~~~~~~~~~~~~~~~~~p~l~~w~~~ 186 (186)
+...+.+.+.+..+|+.|+.+ +|++|+++|+|||++++.+..+.. .+......+|+|++|+++
T Consensus 34 ~~~~~~~~~~l~~le~~L~~~--~~l~G~~~t~aDi~~~~~~~~~~~-----~~~~~~~~~p~l~~w~~~ 96 (107)
T cd03186 34 EKARKELRESLLALAPVFAHK--PYFMSEEFSLVDCALAPLLWRLPA-----LGIELPKQAKPLKDYMER 96 (107)
T ss_pred HHHHHHHHHHHHHHHHHHcCC--CcccCCCCcHHHHHHHHHHHHHHH-----cCCCCcccchHHHHHHHH
Confidence 345677889999999999754 999999999999999999865542 233333579999999864
No 84
>PRK10638 glutaredoxin 3; Provisional
Probab=98.90 E-value=4.7e-09 Score=66.41 Aligned_cols=64 Identities=23% Similarity=0.363 Sum_probs=55.7
Q ss_pred CCChhHHHHHHHHHhcCCCceeEeccCCC-CchhhhhhCCCCCccEEEeCCeeeeeHHHHHHHHH
Q 029887 18 GDCPFSQRALLTLEEKKVPYKRHLINISD-KPQWFMEISPEGKVPVVKFDDKWVADSDVIVRIIE 81 (186)
Q Consensus 18 ~~sp~~~~vr~~L~~~gi~~~~~~~~~~~-~~~~~~~~~p~~~vP~L~~~g~~l~eS~aI~~yL~ 81 (186)
..||||.+++.+|.++|++|+.+.++... ..+++.+.++..++|++..+|..+.....+..+-.
T Consensus 10 ~~Cp~C~~a~~~L~~~gi~y~~~dv~~~~~~~~~l~~~~g~~~vP~i~~~g~~igG~~~~~~~~~ 74 (83)
T PRK10638 10 ATCPFCHRAKALLNSKGVSFQEIPIDGDAAKREEMIKRSGRTTVPQIFIDAQHIGGCDDLYALDA 74 (83)
T ss_pred CCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHhCCCCcCEEEECCEEEeCHHHHHHHHH
Confidence 47999999999999999999999997654 45668888999999999999999999988887644
No 85
>cd03189 GST_C_GTT1_like GST_C family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endopl
Probab=98.88 E-value=3e-09 Score=71.68 Aligned_cols=60 Identities=20% Similarity=0.302 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCcccCCCCChhHHHhhhHHHHHHHHhhhccCCCCCccchhhhccccC
Q 029887 119 TEQALLEELKALDEHLKTHGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYTKV 186 (186)
Q Consensus 119 ~~~~~~~~l~~le~~L~~~~~~yl~G~~~t~aDi~~~~~l~~~~~~~~~~~~~~~~~~~p~l~~w~~~ 186 (186)
..+.+.+.++.+|+.|+++ +|++|+++|+|||++++.+.++... +. ..+.+|+|.+|++|
T Consensus 55 ~~~~~~~~l~~le~~L~~~--~~l~Gd~~t~ADi~l~~~~~~~~~~-----~~-~~~~~p~l~~w~~~ 114 (119)
T cd03189 55 INPELKKHLDFLEDRLAKK--GYFVGDKLTAADIMMSFPLEAALAR-----GP-LLEKYPNIAAYLER 114 (119)
T ss_pred HhHHHHHHHHHHHHHHccC--CCCCCCCCCHHHHHHHHHHHHHHHc-----Cc-ccccCchHHHHHHH
Confidence 3457888999999999865 8999999999999999888776532 11 24789999999874
No 86
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=98.88 E-value=7.5e-09 Score=63.60 Aligned_cols=65 Identities=22% Similarity=0.340 Sum_probs=54.9
Q ss_pred CCCChhHHHHHHHHHhcCCCceeEeccCCCCchhhhhhCCCCCccEEEeCCeeeeeHHHHHHHHH
Q 029887 17 LGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFMEISPEGKVPVVKFDDKWVADSDVIVRIIE 81 (186)
Q Consensus 17 ~~~sp~~~~vr~~L~~~gi~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~g~~l~eS~aI~~yL~ 81 (186)
...||+|.+++-+|...|++|+.+.++.......+.......++|++..+|..+.++..|.+||+
T Consensus 8 ~~~Cp~C~~ak~~L~~~~i~~~~~~v~~~~~~~~~~~~~g~~~vP~ifi~g~~igg~~~l~~~l~ 72 (72)
T cd03029 8 KPGCPFCARAKAALQENGISYEEIPLGKDITGRSLRAVTGAMTVPQVFIDGELIGGSDDLEKYFA 72 (72)
T ss_pred CCCCHHHHHHHHHHHHcCCCcEEEECCCChhHHHHHHHhCCCCcCeEEECCEEEeCHHHHHHHhC
Confidence 35899999999999999999999988765433445555677899999999999999999999974
No 87
>cd03206 GST_C_7 GST_C family, unknown subfamily 7; composed of uncharacterized proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=98.88 E-value=3.8e-09 Score=69.09 Aligned_cols=62 Identities=18% Similarity=0.228 Sum_probs=49.7
Q ss_pred chHHHHHHHHHHHHHHHHhhCCCCcccCCCCChhHHHhhhHHHHHHHHhhhccCCCCCccchhhhccccC
Q 029887 117 DGTEQALLEELKALDEHLKTHGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYTKV 186 (186)
Q Consensus 117 ~~~~~~~~~~l~~le~~L~~~~~~yl~G~~~t~aDi~~~~~l~~~~~~~~~~~~~~~~~~~p~l~~w~~~ 186 (186)
++..+++.+.+..+|+.|+++ +|++|+++|+||+.+++++..... ... ..+.+|+|.+|++|
T Consensus 32 ~~~~~~~~~~l~~le~~L~~~--~~l~G~~~t~aDi~~~~~~~~~~~-----~~~-~~~~~p~l~~~~~~ 93 (100)
T cd03206 32 ETAIARAHRLLRLLEEHLAGR--DWLAGDRPTIADVAVYPYVALAPE-----GGV-DLEDYPAIRRWLAR 93 (100)
T ss_pred HHHHHHHHHHHHHHHHHHccC--CccCCCCCCHHHHHHHHHHHHHhc-----cCC-ChhhCcHHHHHHHH
Confidence 456788999999999999875 899999999999999988765332 111 23789999999874
No 88
>cd03187 GST_C_Phi GST_C family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes a
Probab=98.87 E-value=2.3e-09 Score=72.06 Aligned_cols=63 Identities=25% Similarity=0.314 Sum_probs=49.4
Q ss_pred hHHHHHHHHHHHHHHHHhhCCCCcccCCCCChhHHHhhhHHHHHHHHhhhccCCCCCccchhhhccccC
Q 029887 118 GTEQALLEELKALDEHLKTHGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYTKV 186 (186)
Q Consensus 118 ~~~~~~~~~l~~le~~L~~~~~~yl~G~~~t~aDi~~~~~l~~~~~~~~~~~~~~~~~~~p~l~~w~~~ 186 (186)
...+.+.+.++.+|+.|+++ +|++|+++|+|||++++++.++... ......+.+|+|++|+++
T Consensus 45 ~~~~~~~~~l~~le~~L~~~--~~l~G~~~t~aDi~l~~~~~~~~~~----~~~~~~~~~p~l~~~~~~ 107 (118)
T cd03187 45 ENEEKLKKVLDVYEARLSKS--KYLAGDSFTLADLSHLPYLQYLMAT----PFAKLFDSRPHVKAWWED 107 (118)
T ss_pred HHHHHHHHHHHHHHHHcccC--cccCCCCccHHHHHHHHHHHHHHHc----cchhhhhcCchHHHHHHH
Confidence 34567889999999999864 8999999999999999998877531 111123679999999864
No 89
>cd03191 GST_C_Zeta GST_C family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates, but display modest GSH peroxidase activity. They are also implicated in the detoxification of th
Probab=98.87 E-value=4.7e-09 Score=71.00 Aligned_cols=61 Identities=18% Similarity=0.315 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHhhCCCCcccCCCCChhHHHhhhHHHHHHHHhhhccCCCCCccchhhhccccC
Q 029887 120 EQALLEELKALDEHLKTHGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYTKV 186 (186)
Q Consensus 120 ~~~~~~~l~~le~~L~~~~~~yl~G~~~t~aDi~~~~~l~~~~~~~~~~~~~~~~~~~p~l~~w~~~ 186 (186)
.+.+.+.|..+|+.|++++++|++|+++|+|||++++.+.++... +.. .+.+|+|++|+++
T Consensus 46 ~~~~~~~l~~le~~L~~~~~~~l~G~~~t~ADi~~~~~~~~~~~~-----~~~-~~~~p~l~~w~~~ 106 (121)
T cd03191 46 RHWIARGFAALEKLLAQTAGKFCFGDEPTLADICLVPQVYNARRF-----GVD-LSPYPTIARINEA 106 (121)
T ss_pred HHHHHHHHHHHHHHHHhcCCCeecCCcCCHHHHHHHHHHHHHHHh-----CCC-cccCcHHHHHHHH
Confidence 356788899999999864457999999999999999988765531 222 3789999999874
No 90
>cd03180 GST_C_2 GST_C family, unknown subfamily 2; composed of uncharacterized bacterial proteins, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=98.86 E-value=4.3e-09 Score=69.73 Aligned_cols=61 Identities=21% Similarity=0.347 Sum_probs=48.8
Q ss_pred hHHHHHHHHHHHHHHHHhhCCCCcccCCCCChhHHHhhhHHHHHHHHhhhccCCCCCccchhhhccccC
Q 029887 118 GTEQALLEELKALDEHLKTHGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYTKV 186 (186)
Q Consensus 118 ~~~~~~~~~l~~le~~L~~~~~~yl~G~~~t~aDi~~~~~l~~~~~~~~~~~~~~~~~~~p~l~~w~~~ 186 (186)
...+.+.+.++.+|+.|+++ +|++|+++|+|||++++++..+.. .. . ..+++|+|++|+++
T Consensus 43 ~~~~~~~~~l~~lE~~L~~~--~~l~g~~~t~aDi~~~~~~~~~~~----~~-~-~~~~~p~l~~~~~~ 103 (110)
T cd03180 43 ASLAAWAKLMAILDAQLAGR--PYLAGDRFTLADIPLGCSAYRWFE----LP-I-ERPPLPHLERWYAR 103 (110)
T ss_pred HHHHHHHHHHHHHHHHhCCC--CcccCCCCCHHHHHHHHHHHHHHH----cc-c-ccccCchHHHHHHH
Confidence 35678899999999999864 899999999999999998864432 11 1 24789999999874
No 91
>cd03209 GST_C_Mu GST_C family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the m
Probab=98.85 E-value=5.8e-09 Score=70.68 Aligned_cols=62 Identities=21% Similarity=0.348 Sum_probs=49.1
Q ss_pred hHHHHHHHHHHHHHHHHhhCCCCcccCCCCChhHHHhhhHHHHHHHHhhhccCCCCCccchhhhccccC
Q 029887 118 GTEQALLEELKALDEHLKTHGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYTKV 186 (186)
Q Consensus 118 ~~~~~~~~~l~~le~~L~~~~~~yl~G~~~t~aDi~~~~~l~~~~~~~~~~~~~~~~~~~p~l~~w~~~ 186 (186)
...+.+.+.+..+|+.|+++ +|++|+++|+||+++++.+.++....+ ...+.+|+|.+|++|
T Consensus 35 ~~~~~~~~~l~~le~~L~~~--~~l~G~~~T~aDi~l~~~~~~~~~~~~-----~~~~~~P~l~~~~~r 96 (121)
T cd03209 35 DYLAKLPDKLKLFSDFLGDR--PWFAGDKITYVDFLLYEALDQHRIFEP-----DCLDAFPNLKDFLER 96 (121)
T ss_pred HHHHHHHHHHHHHHHHhCCC--CCcCCCCccHHHHHHHHHHHHHHHhCc-----cccccChHHHHHHHH
Confidence 34566788899999999764 899999999999999999888764211 124689999999864
No 92
>cd03192 GST_C_Sigma_like GST_C family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi, and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition
Probab=98.84 E-value=4.3e-09 Score=69.21 Aligned_cols=65 Identities=23% Similarity=0.294 Sum_probs=51.1
Q ss_pred hHHHHHHHHHHHHHHHHhhCCCCcccCCCCChhHHHhhhHHHHHHHHhhhccCCCCCccchhhhccccC
Q 029887 118 GTEQALLEELKALDEHLKTHGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYTKV 186 (186)
Q Consensus 118 ~~~~~~~~~l~~le~~L~~~~~~yl~G~~~t~aDi~~~~~l~~~~~~~~~~~~~~~~~~~p~l~~w~~~ 186 (186)
...+.+.+.++.+|+.|++.+++|++|+++|+||+++++++.++....+.. ..+.+|+|.+|++|
T Consensus 39 ~~~~~~~~~l~~le~~l~~~~~~~~~G~~~s~aDi~l~~~~~~~~~~~~~~----~~~~~p~l~~~~~~ 103 (104)
T cd03192 39 FLKEAIPKYLKKLEKILKENGGGYLVGDKLTWADLVVFDVLDYLLYLDPKL----LLKKYPKLKALRER 103 (104)
T ss_pred HHHHhhHHHHHHHHHHHHHcCCCeeeCCCccHHHHHHHHHHHHHHhhCchh----hHHhChhHHHHHHh
Confidence 345677889999999998733489999999999999999998886432211 14789999999875
No 93
>cd03188 GST_C_Beta GST_C family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site for
Probab=98.84 E-value=4.2e-09 Score=70.26 Aligned_cols=61 Identities=18% Similarity=0.243 Sum_probs=48.9
Q ss_pred hHHHHHHHHHHHHHHHHhhCCCCcccCCCCChhHHHhhhHHHHHHHHhhhccCCCCCccchhhhccccC
Q 029887 118 GTEQALLEELKALDEHLKTHGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYTKV 186 (186)
Q Consensus 118 ~~~~~~~~~l~~le~~L~~~~~~yl~G~~~t~aDi~~~~~l~~~~~~~~~~~~~~~~~~~p~l~~w~~~ 186 (186)
...+.+.+.++.+|+.|+.+ +|++|+++|+|||++++.+.++.. .+.. .+.+|+|.+|+++
T Consensus 43 ~~~~~~~~~l~~le~~l~~~--~~l~G~~~t~aDi~~~~~~~~~~~-----~~~~-~~~~p~l~~w~~~ 103 (114)
T cd03188 43 AARERLAARLAYLDAQLAGG--PYLLGDRFSVADAYLFVVLRWAPG-----VGLD-LSDWPNLAAYLAR 103 (114)
T ss_pred HHHHHHHHHHHHHHHHhcCC--CeeeCCCcchHHHHHHHHHHHHhh-----cCCC-hhhChHHHHHHHH
Confidence 45567889999999999854 899999999999999999887653 1222 3679999999864
No 94
>cd03179 GST_C_1 GST_C family, unknown subfamily 1; composed of uncharacterized bacterial proteins, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=98.84 E-value=4.2e-09 Score=69.26 Aligned_cols=61 Identities=16% Similarity=0.216 Sum_probs=49.7
Q ss_pred hHHHHHHHHHHHHHHHHhhCCCCcccCCCCChhHHHhhhHHHHHHHHhhhccCCCCCccchhhhccccC
Q 029887 118 GTEQALLEELKALDEHLKTHGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYTKV 186 (186)
Q Consensus 118 ~~~~~~~~~l~~le~~L~~~~~~yl~G~~~t~aDi~~~~~l~~~~~~~~~~~~~~~~~~~p~l~~w~~~ 186 (186)
...+++.+.++.+|+.|+.+ +|++|+++|+|||++++++.++.. .+.. ...+|+|.+|+++
T Consensus 43 ~~~~~~~~~l~~le~~L~~~--~~l~g~~~slaDi~~~~~~~~~~~-----~~~~-~~~~p~l~~~~~~ 103 (105)
T cd03179 43 FLRERGHAALAVLEAHLAGR--DFLVGDALTIADIALAAYTHVADE-----GGFD-LADYPAIRAWLAR 103 (105)
T ss_pred HHHHHHHHHHHHHHHHHccC--ccccCCCCCHHHHHHHHHHHhccc-----cCCC-hHhCccHHHHHHh
Confidence 45677888999999999754 899999999999999999887653 2222 3679999999875
No 95
>cd03185 GST_C_Tau GST_C family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropi
Probab=98.84 E-value=6.3e-09 Score=70.78 Aligned_cols=67 Identities=24% Similarity=0.352 Sum_probs=51.8
Q ss_pred chHHHHHHHHHHHHHHHHhhCCCCcccCCCCChhHHHhhhHHHHHHHHhhhccCCC--CCccchhhhccccC
Q 029887 117 DGTEQALLEELKALDEHLKTHGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWT--VPESLAHVHGYTKV 186 (186)
Q Consensus 117 ~~~~~~~~~~l~~le~~L~~~~~~yl~G~~~t~aDi~~~~~l~~~~~~~~~~~~~~--~~~~~p~l~~w~~~ 186 (186)
+...+.+.+.++.+|+.|+.+ +|++|+++|+|||++++.+.++..... ..+.. ..+.+|++.+|+++
T Consensus 34 ~~~~~~~~~~l~~le~~L~~~--~~l~G~~~t~ADi~l~~~~~~~~~~~~-~~~~~~~~~~~~p~l~~w~~~ 102 (126)
T cd03185 34 EKAKEEALEALKVLEEELGGK--PFFGGDTIGYVDIALGSFLGWFRAYEE-VGGVKLLDEEKTPLLAAWAER 102 (126)
T ss_pred HHHHHHHHHHHHHHHHHhcCC--CCCCCCCcchHHHHHHHHHHHHHHHHH-HcCccccCcccCchHHHHHHH
Confidence 345677889999999999764 999999999999999999988754321 12222 23679999999864
No 96
>cd03207 GST_C_8 GST_C family, unknown subfamily 8; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=98.82 E-value=7.2e-09 Score=68.05 Aligned_cols=61 Identities=20% Similarity=0.192 Sum_probs=50.4
Q ss_pred chHHHHHHHHHHHHHHHHhhCCCCcccCCCCChhHHHhhhHHHHHHHHhhhccCCCCCccchhhhccccC
Q 029887 117 DGTEQALLEELKALDEHLKTHGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYTKV 186 (186)
Q Consensus 117 ~~~~~~~~~~l~~le~~L~~~~~~yl~G~~~t~aDi~~~~~l~~~~~~~~~~~~~~~~~~~p~l~~w~~~ 186 (186)
+...+++.+.++.+|+.|+++ +|++|+++|+|||++++.+.++... + ..+.+|+|.+|+++
T Consensus 29 ~~~~~~~~~~l~~le~~l~~~--~~l~g~~~t~aDi~~~~~~~~~~~~-----~--~~~~~p~l~~w~~~ 89 (103)
T cd03207 29 MAGFGSYDDVLAALEQALAKG--PYLLGERFTAADVLVGSPLGWGLQF-----G--LLPERPAFDAYIAR 89 (103)
T ss_pred hhhhhhHHHHHHHHHHHHccC--CcccCCccCHHHHHHHHHHHHHHHc-----C--CCCCChHHHHHHHH
Confidence 445577899999999999865 8999999999999999998887631 2 23679999999874
No 97
>cd03183 GST_C_Theta GST_C family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenatio
Probab=98.81 E-value=7.6e-09 Score=70.47 Aligned_cols=63 Identities=24% Similarity=0.394 Sum_probs=48.3
Q ss_pred hHHHHHHHHHHHHHHHHhhCCCCcccCCCCChhHHHhhhHHHHHHHHhhhccCCCCCccchhhhccccC
Q 029887 118 GTEQALLEELKALDEHLKTHGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYTKV 186 (186)
Q Consensus 118 ~~~~~~~~~l~~le~~L~~~~~~yl~G~~~t~aDi~~~~~l~~~~~~~~~~~~~~~~~~~p~l~~w~~~ 186 (186)
...+.+.+.+..+|+.+.+ +++|++|+++|+|||++++.+.+... .+....+++|+|.+|+++
T Consensus 45 ~~~~~~~~~l~~le~~l~~-~~~~l~Gd~~t~ADi~l~~~~~~~~~-----~~~~~~~~~p~l~~w~~~ 107 (126)
T cd03183 45 KAEENLEESLDLLENYFLK-DKPFLAGDEISIADLSAVCEIMQPEA-----AGYDVFEGRPKLAAWRKR 107 (126)
T ss_pred HHHHHHHHHHHHHHHHHhc-CCCcccCCCCCHHHHHHHHHHHHHHh-----cCCcccccCchHHHHHHH
Confidence 3456788999999997543 24899999999999999988766643 233334789999999874
No 98
>cd03177 GST_C_Delta_Epsilon GST_C family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites th
Probab=98.80 E-value=9.6e-09 Score=69.22 Aligned_cols=65 Identities=23% Similarity=0.364 Sum_probs=52.0
Q ss_pred CCchHHHHHHHHHHHHHHHHhhCCCCcccCCCCChhHHHhhhHHHHHHHHhhhccCCCCCccchhhhccccC
Q 029887 115 PNDGTEQALLEELKALDEHLKTHGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYTKV 186 (186)
Q Consensus 115 ~~~~~~~~~~~~l~~le~~L~~~~~~yl~G~~~t~aDi~~~~~l~~~~~~~~~~~~~~~~~~~p~l~~w~~~ 186 (186)
..+...+.+.+.+..+|+.|+++ +|++|+++|+||+++++++.++... .+.. ...+|+|.+|+++
T Consensus 35 ~~~~~~~~~~~~l~~le~~L~~~--~~l~G~~~s~aDi~l~~~~~~~~~~----~~~~-~~~~p~l~~w~~~ 99 (118)
T cd03177 35 PPEEKLDKLEEALDFLETFLEGS--DYVAGDQLTIADLSLVATVSTLEAL----LPLD-LSKYPNVRAWLER 99 (118)
T ss_pred CCHHHHHHHHHHHHHHHHHHccC--CeeCCCCcCHHHHHHHHHHHHHHHh----cCCC-hhhCchHHHHHHH
Confidence 34566788999999999999765 8999999999999999999887631 2222 2679999999864
No 99
>cd03178 GST_C_Ure2p_like GST_C family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. The N-terminal thioredoxin-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of GSH with a wide range of en
Probab=98.79 E-value=4.8e-09 Score=69.97 Aligned_cols=62 Identities=15% Similarity=0.236 Sum_probs=50.1
Q ss_pred hHHHHHHHHHHHHHHHHhhCCCCcccCCCCChhHHHhhhHHHHHHHHhhhccCCCCCccchhhhccccC
Q 029887 118 GTEQALLEELKALDEHLKTHGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYTKV 186 (186)
Q Consensus 118 ~~~~~~~~~l~~le~~L~~~~~~yl~G~~~t~aDi~~~~~l~~~~~~~~~~~~~~~~~~~p~l~~w~~~ 186 (186)
...+.+.+.++.+|+.|+.+ +|++|+++|+|||++++.+.++... +....+.+|+|.+|+++
T Consensus 40 ~~~~~~~~~l~~le~~L~~~--~~l~G~~~t~aDi~l~~~~~~~~~~-----~~~~~~~~p~l~~w~~~ 101 (113)
T cd03178 40 RYTNEAKRLYGVLDKRLAGR--DYLAGDEYSIADIAIFPWVRRLEWI-----GIDDLDDFPNVKRWLDR 101 (113)
T ss_pred HHHHHHHHHHHHHHHHHccC--CcccCCCCCeeeeeHHHHHHHHHhc-----cccchhhchHHHHHHHH
Confidence 45677889999999999754 8999999999999999988887542 22234789999999864
No 100
>PRK10329 glutaredoxin-like protein; Provisional
Probab=98.78 E-value=1.8e-08 Score=63.37 Aligned_cols=61 Identities=15% Similarity=0.176 Sum_probs=46.7
Q ss_pred CceeehhhhcccCCCCCCCChhHHHHHHHHHhcCCCceeEeccCCCCchhhhhhCCCCCccEEEeCCeee
Q 029887 1 MAVEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFMEISPEGKVPVVKFDDKWV 70 (186)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~sp~~~~vr~~L~~~gi~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~g~~l 70 (186)
|+|++|.+ .+||+|.+++-+|.++||+|+.+.++......+.....+..++|+++.+|..+
T Consensus 1 ~~v~lYt~---------~~Cp~C~~ak~~L~~~gI~~~~idi~~~~~~~~~~~~~g~~~vPvv~i~~~~~ 61 (81)
T PRK10329 1 MRITIYTR---------NDCVQCHATKRAMESRGFDFEMINVDRVPEAAETLRAQGFRQLPVVIAGDLSW 61 (81)
T ss_pred CEEEEEeC---------CCCHhHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHcCCCCcCEEEECCEEE
Confidence 66777766 47999999999999999999999887543222223346888999999887543
No 101
>cd03211 GST_C_Metaxin2 GST_C family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=98.75 E-value=4.9e-09 Score=71.63 Aligned_cols=72 Identities=14% Similarity=0.222 Sum_probs=54.1
Q ss_pred CCCCchHHHHHHHHHHHHHHHHhhCCCCcccCCCCChhHHHhhhHHHHHHHHhhhccCCC-CCccchhhhccccC
Q 029887 113 KDPNDGTEQALLEELKALDEHLKTHGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWT-VPESLAHVHGYTKV 186 (186)
Q Consensus 113 ~~~~~~~~~~~~~~l~~le~~L~~~~~~yl~G~~~t~aDi~~~~~l~~~~~~~~~~~~~~-~~~~~p~l~~w~~~ 186 (186)
....++..+...+.+..+++.|+++ +||+|++||.+|+.+++++..+........... ..+.+|+|.+|++|
T Consensus 52 r~~~ee~~~~~~~~l~aLs~~Lg~~--~~l~Gd~pT~~Da~vf~~la~~~~~~~~~~~l~~~~~~~pnL~~y~~R 124 (126)
T cd03211 52 DKTLDQVIEEVDQCCQALSQRLGTQ--PYFFGDQPTELDALVFGHLFTILTTQLPNDELAEKVKKYSNLLAFCRR 124 (126)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHCCC--CCCCCCCCcHHHHHHHHHHHHHHhcCCCChHHHHHHHhCcHHHHHHHh
Confidence 3345667778899999999999986 999999999999999999887753211000111 24789999999876
No 102
>cd03197 GST_C_mPGES2 GST_C family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH, or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature, and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated and a C-terminal soluble domain with a GST-like structure. The C-terminus contains two structural domains a N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. The GST active site is located in a cleft between t
Probab=98.68 E-value=5.1e-08 Score=67.76 Aligned_cols=77 Identities=16% Similarity=0.157 Sum_probs=55.9
Q ss_pred HHHHhhcCCCCC-chHHHHHHHHHHHHHHHHhhCCCCcccCCCCChhHHHhhhHHHHHHHHhhhccCCCCCccchhhhcc
Q 029887 105 SFVNFLKSKDPN-DGTEQALLEELKALDEHLKTHGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGY 183 (186)
Q Consensus 105 ~~~~~~~~~~~~-~~~~~~~~~~l~~le~~L~~~~~~yl~G~~~t~aDi~~~~~l~~~~~~~~~~~~~~~~~~~p~l~~w 183 (186)
.+...+..+... +..++.+.+.++.|=+.+.++ ++|++|+++|+|||.+++++..+.. +.++....++|+|.+|
T Consensus 65 ~isk~lkk~~~i~~D~r~~L~~a~~~w~~~~~~~-~~FlaGd~ptIADisvyg~l~s~e~----~~~~~Dl~~~p~I~~W 139 (149)
T cd03197 65 LISKYLKKPRLLQDDVREWLYDALNTWVAALGKD-RQFHGGSKPNLADLAVYGVLRSVEG----HPAFKDMVEETKIGEW 139 (149)
T ss_pred HHHHHhccccCCCchHHHHHHHHHHHHHHHhcCC-CCccCCCCCCHHHHHHHHHHHHHHH----hccccchhhCcCHHHH
Confidence 344444443433 456788888888877666653 5899999999999999999988764 3344234689999999
Q ss_pred ccC
Q 029887 184 TKV 186 (186)
Q Consensus 184 ~~~ 186 (186)
++|
T Consensus 140 ~eR 142 (149)
T cd03197 140 YER 142 (149)
T ss_pred HHH
Confidence 875
No 103
>cd03181 GST_C_EFB1gamma GST_C family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role
Probab=98.66 E-value=1.9e-08 Score=68.07 Aligned_cols=64 Identities=19% Similarity=0.195 Sum_probs=49.1
Q ss_pred hHHHHHHHHHHHHHHHHhhCCCCcccCCCCChhHHHhhhHHHHHHHHhhhccCCCCCccchhhhccccC
Q 029887 118 GTEQALLEELKALDEHLKTHGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYTKV 186 (186)
Q Consensus 118 ~~~~~~~~~l~~le~~L~~~~~~yl~G~~~t~aDi~~~~~l~~~~~~~~~~~~~~~~~~~p~l~~w~~~ 186 (186)
...+.+.+.++.+|+.|+.+ +|++|+++|+|||++++.+.++..... +....+.+|++.+|+++
T Consensus 40 ~~~~~~~~~l~~le~~l~~~--~~l~G~~~siaDi~l~~~~~~~~~~~~---~~~~~~~~p~l~~w~~~ 103 (123)
T cd03181 40 AALEELDRVLGVLEERLLKR--TYLVGERLTLADIFVAGALLLGFTYVF---DKEWRAKYPNVTRWFNT 103 (123)
T ss_pred HHHHHHHHHHHHHHHHHccC--ceeccCCccHHHHHHHHHHHHHHHHHc---CHHHHHhChHHHHHHHH
Confidence 44567888999999999865 899999999999999999887643211 11123678999999863
No 104
>cd03205 GST_C_6 GST_C family, unknown subfamily 6; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=98.62 E-value=7.7e-08 Score=62.66 Aligned_cols=62 Identities=15% Similarity=0.190 Sum_probs=48.6
Q ss_pred chHHHHHHHHHHHHHHHHhhCCCCcccCCCCChhHHHhhhHHHHHHHHhhhccCCCCCccchhhhccccC
Q 029887 117 DGTEQALLEELKALDEHLKTHGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYTKV 186 (186)
Q Consensus 117 ~~~~~~~~~~l~~le~~L~~~~~~yl~G~~~t~aDi~~~~~l~~~~~~~~~~~~~~~~~~~p~l~~w~~~ 186 (186)
+...+.+.+.+..+|+.|+++ +| +++|+|||++++.+.+..... .+....+++|+|.+|++|
T Consensus 36 ~~~~~~~~~~l~~le~~L~~~--~~---d~~TlADi~l~~~l~~~~~~~---~~~~~~~~~p~l~~w~~r 97 (98)
T cd03205 36 ERQRGKIERALDALEAELAKL--PL---DPLDLADIAVACALGYLDFRH---PDLDWRAAHPALAAWYAR 97 (98)
T ss_pred HHHHHHHHHHHHHHHHhhhhC--CC---CCCCHHHHHHHHHHHHHHhHc---cCcchhhhChHHHHHHHh
Confidence 345678899999999999865 77 899999999999998876421 122234789999999875
No 105
>cd03194 GST_C_3 GST_C family, unknown subfamily 3; composed of uncharacterized proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=98.58 E-value=2e-07 Score=62.47 Aligned_cols=62 Identities=18% Similarity=0.347 Sum_probs=46.5
Q ss_pred CchHHHHHHHHHHHHHHHHhhC-CCCcccCCCCChhHHHhhhHHHHHHHHhhhccCCCCCccchhhhccccC
Q 029887 116 NDGTEQALLEELKALDEHLKTH-GGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYTKV 186 (186)
Q Consensus 116 ~~~~~~~~~~~l~~le~~L~~~-~~~yl~G~~~t~aDi~~~~~l~~~~~~~~~~~~~~~~~~~p~l~~w~~~ 186 (186)
.+...+.+.+.+..+|..++.. +++|++|+ +|+||+++++++.++... +... .|+|++|++|
T Consensus 39 ~~~~~~~~~~~~~~le~~l~~~~~~~yl~Gd-~T~ADi~l~~~~~~~~~~-----~~~~---~P~l~~~~~r 101 (114)
T cd03194 39 SEAVQADIARIEAIWAECLARFQGGPFLFGD-FSIADAFFAPVVTRFRTY-----GLPL---SPAAQAYVDA 101 (114)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCCCCCCC-CcHHHHHHHHHHHHHHHc-----CCCC---CHHHHHHHHH
Confidence 4566677888888888888643 56899999 999999999998877531 2221 2888888764
No 106
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=98.56 E-value=3.9e-07 Score=57.77 Aligned_cols=76 Identities=20% Similarity=0.253 Sum_probs=60.9
Q ss_pred CceeehhhhcccCCCCCCCChhHHHHHHHHHh-----cCCCceeEeccCCC-CchhhhhhCCC--CCccEEEeCCeeeee
Q 029887 1 MAVEICVKAAVGAPDILGDCPFSQRALLTLEE-----KKVPYKRHLINISD-KPQWFMEISPE--GKVPVVKFDDKWVAD 72 (186)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~sp~~~~vr~~L~~-----~gi~~~~~~~~~~~-~~~~~~~~~p~--~~vP~L~~~g~~l~e 72 (186)
|.|++|.+. +||+|.+++-+|.. .|++|+.+.++... ..+++...... ..+|.+..+|..+..
T Consensus 1 m~v~iy~~~---------~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~ifi~g~~igg 71 (85)
T PRK11200 1 MFVVIFGRP---------GCPYCVRAKELAEKLSEERDDFDYRYVDIHAEGISKADLEKTVGKPVETVPQIFVDQKHIGG 71 (85)
T ss_pred CEEEEEeCC---------CChhHHHHHHHHHhhcccccCCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEEECCEEEcC
Confidence 778888774 79999999999999 89999998887532 12334444332 589999999999999
Q ss_pred HHHHHHHHHHhCC
Q 029887 73 SDVIVRIIEEKYP 85 (186)
Q Consensus 73 S~aI~~yL~~~~~ 85 (186)
...|..++.+.++
T Consensus 72 ~~~~~~~~~~~~~ 84 (85)
T PRK11200 72 CTDFEAYVKENLG 84 (85)
T ss_pred HHHHHHHHHHhcc
Confidence 9999999988775
No 107
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=98.55 E-value=2e-07 Score=57.38 Aligned_cols=63 Identities=24% Similarity=0.232 Sum_probs=51.0
Q ss_pred CCCCCChhHHHHHHHHHhcCCCceeEeccCCC-CchhhhhhCCCCCccEEEeCCeeeeeHHHHH
Q 029887 15 DILGDCPFSQRALLTLEEKKVPYKRHLINISD-KPQWFMEISPEGKVPVVKFDDKWVADSDVIV 77 (186)
Q Consensus 15 ~~~~~sp~~~~vr~~L~~~gi~~~~~~~~~~~-~~~~~~~~~p~~~vP~L~~~g~~l~eS~aI~ 77 (186)
+..+.||+|.+++.+|++.|++|+.+.+.... ..+++.+.++..++|++..+|..+..-....
T Consensus 6 y~~~~C~~C~ka~~~L~~~gi~~~~~di~~~~~~~~el~~~~g~~~vP~v~i~~~~iGg~~~~~ 69 (73)
T cd03027 6 YSRLGCEDCTAVRLFLREKGLPYVEINIDIFPERKAELEERTGSSVVPQIFFNEKLVGGLTDLK 69 (73)
T ss_pred EecCCChhHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHHhCCCCcCEEEECCEEEeCHHHHH
Confidence 34468999999999999999999999887543 3456888889999999999998777655543
No 108
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=4.4e-07 Score=56.86 Aligned_cols=70 Identities=23% Similarity=0.360 Sum_probs=52.1
Q ss_pred CceeehhhhcccCCCCCCCChhHHHHHHHHHhcCCCceeEeccCCC--Cchhhhh-hCCCCCccEEEeCCeeeeeHHHHH
Q 029887 1 MAVEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISD--KPQWFME-ISPEGKVPVVKFDDKWVADSDVIV 77 (186)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~sp~~~~vr~~L~~~gi~~~~~~~~~~~--~~~~~~~-~~p~~~vP~L~~~g~~l~eS~aI~ 77 (186)
|.+++|.+. .||||.++.-+|..+|++|+.+.++..+ ...++.. .++..++|++..+|..+.....+-
T Consensus 1 ~~v~iyt~~---------~CPyC~~ak~~L~~~g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i~~~~igg~~d~~ 71 (80)
T COG0695 1 ANVTIYTKP---------GCPYCKRAKRLLDRKGVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFIGGKHVGGCDDLD 71 (80)
T ss_pred CCEEEEECC---------CCchHHHHHHHHHHcCCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEECCEEEeCcccHH
Confidence 456666663 6999999999999999999999888765 3333444 347889999999997766544433
Q ss_pred HH
Q 029887 78 RI 79 (186)
Q Consensus 78 ~y 79 (186)
.+
T Consensus 72 ~~ 73 (80)
T COG0695 72 AL 73 (80)
T ss_pred HH
Confidence 33
No 109
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=98.49 E-value=4.4e-07 Score=55.00 Aligned_cols=62 Identities=19% Similarity=0.296 Sum_probs=52.4
Q ss_pred CCChhHHHHHHHHHhcCCCceeEeccCCC-CchhhhhhCCCCCccEEEeCCeeeeeHHHHHHH
Q 029887 18 GDCPFSQRALLTLEEKKVPYKRHLINISD-KPQWFMEISPEGKVPVVKFDDKWVADSDVIVRI 79 (186)
Q Consensus 18 ~~sp~~~~vr~~L~~~gi~~~~~~~~~~~-~~~~~~~~~p~~~vP~L~~~g~~l~eS~aI~~y 79 (186)
.+||+|++++.+|..+|++|+.+.+.... ..+++.+.++..++|++..+|..+.++..|.+.
T Consensus 8 ~~Cp~C~~~~~~L~~~~i~~~~~di~~~~~~~~~l~~~~~~~~~P~~~~~~~~igg~~~~~~~ 70 (72)
T cd02066 8 STCPYCKRAKRLLESLGIEFEEIDILEDGELREELKELSGWPTVPQIFINGEFIGGYDDLKAL 70 (72)
T ss_pred CCCHHHHHHHHHHHHcCCcEEEEECCCCHHHHHHHHHHhCCCCcCEEEECCEEEecHHHHHHh
Confidence 47999999999999999999988776543 345577778889999999999999999888754
No 110
>cd03212 GST_C_Metaxin1_3 GST_C family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins. Mammalian metaxin (or metaxin 1) is a component of the preprotein import complex of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken, and mammals.
Probab=98.48 E-value=6.4e-08 Score=67.04 Aligned_cols=67 Identities=16% Similarity=0.127 Sum_probs=50.9
Q ss_pred CchHHHHHHHHHHHHHHHHhhCCCCcccCCCCChhHHHhhhHHHHHHHHhhhccCC---CCCccchhhhccccC
Q 029887 116 NDGTEQALLEELKALDEHLKTHGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQW---TVPESLAHVHGYTKV 186 (186)
Q Consensus 116 ~~~~~~~~~~~l~~le~~L~~~~~~yl~G~~~t~aDi~~~~~l~~~~~~~~~~~~~---~~~~~~p~l~~w~~~ 186 (186)
.++..+...+.++.+++.|+++ +|++|+++|.+|+.+++++..+... ..+.. ...+++|+|.+|++|
T Consensus 62 ~~~~~~~a~~~l~~l~~~L~~~--~~~~Gd~~t~~D~~~~~~l~~~~~~--~~~~~~l~~~~~~~pnL~~~~~r 131 (137)
T cd03212 62 EAEIYRDAKECLNLLSQRLGES--QFFFGDTPTSLDALVFGYLAPLLKA--PLPNNKLQNHLKQCPNLCRFCDR 131 (137)
T ss_pred HHHHHHHHHHHHHHHHHHHCCC--CcCCCCCCcHHHHHHHHHHHHHHhc--cCCChHHHHHHHHCcHHHHHHHH
Confidence 3455677788999999999976 9999999999999999988776531 11110 114789999999875
No 111
>KOG3028 consensus Translocase of outer mitochondrial membrane complex, subunit TOM37/Metaxin 1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.46 E-value=2.4e-06 Score=65.54 Aligned_cols=169 Identities=21% Similarity=0.261 Sum_probs=102.0
Q ss_pred eehhhhcccCCCCCCCChhHHHHHHHHHhcCCCceeEeccCCCCchhhhhhCCCCCccEEEe-CCeeeeeHHHHHHHHHH
Q 029887 4 EICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFMEISPEGKVPVVKF-DDKWVADSDVIVRIIEE 82 (186)
Q Consensus 4 ~~~~~~~~~~~~~~~~sp~~~~vr~~L~~~gi~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~-~g~~l~eS~aI~~yL~~ 82 (186)
+|+.+. +.......++-|..+.+.+..++.+.+++.... +| ..|.|++|+|+. +|+.+..-..|..+|..
T Consensus 3 ~L~~~~--~~~glptid~~sL~~l~y~kl~~~~l~v~~ssN----~~---~s~sg~LP~l~~~ng~~va~~~~iv~~L~k 73 (313)
T KOG3028|consen 3 ELHIWS--GGYGLPTIDPDSLAALIYLKLAGAPLKVVVSSN----PW---RSPSGKLPYLITDNGTKVAGPVKIVQFLKK 73 (313)
T ss_pred eEEEec--CCCCCCCcChhHHHHHHHHHHhCCCceeEeecC----CC---CCCCCCCCeEEecCCceeccHHHHHHHHHH
Confidence 444442 235556689999999999999996665554432 22 367899999996 56999999999999998
Q ss_pred hCCCCCCCCCh---HHHh-------hccccchHHHH--------------------------hh---------------c
Q 029887 83 KYPEPSLTNPP---EFAS-------LGSKIFPSFVN--------------------------FL---------------K 111 (186)
Q Consensus 83 ~~~~~~l~~~~---~~~~-------~~~~~~~~~~~--------------------------~~---------------~ 111 (186)
.-....+-+.. +.+. +..++.+.+.. +. .
T Consensus 74 ~~~ky~~d~dl~~kq~a~~~a~~sll~~~l~~a~~~t~~v~~~Ny~e~Tkk~yak~l~fP~n~~~p~~l~~qAk~rl~l~ 153 (313)
T KOG3028|consen 74 NTKKYNLDADLSAKQLADTLAFMSLLEENLEPALLYTFWVDTENYNEVTKKWYAKALPFPLNYILPGKLQRQAKERLQLT 153 (313)
T ss_pred hcccCCcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHhHHHHHhcCCCchhhcchhhhHHHHHHHHHHH
Confidence 42222222111 1111 11111111000 00 0
Q ss_pred CCCC---CchHHHHHHHHHHHHHHHHhhCCCCcccCCCCChhHHHhhhHHHHHHHHhhhccCCCC---Cccchhhhcccc
Q 029887 112 SKDP---NDGTEQALLEELKALDEHLKTHGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTV---PESLAHVHGYTK 185 (186)
Q Consensus 112 ~~~~---~~~~~~~~~~~l~~le~~L~~~~~~yl~G~~~t~aDi~~~~~l~~~~~~~~~~~~~~~---~~~~p~l~~w~~ 185 (186)
.... ..+......++++.+.+.|+++ .|++|+++|--|+.+++.+..+-.. .++.-.. ...+++|.++.+
T Consensus 154 ~g~~~~~e~~i~~~Aska~~~LS~~Lgs~--kffFgd~psslDa~lfs~la~~~~~--~Lp~~~Lq~~l~~~~NL~~~~~ 229 (313)
T KOG3028|consen 154 LGELTEREDQIYKDASKALNLLSTLLGSK--KFFFGDKPSSLDALLFSYLAILLQV--ALPNDSLQVHLLAHKNLVRYVE 229 (313)
T ss_pred hCCchhhHHHHHHHHHHHHHHHHHHhcCc--eEeeCCCCchHHHHHHHHHHHHHhc--cCCchhHHHHHHhcchHHHHHH
Confidence 0011 1122234567788999999987 9999999999999999998873221 1222111 244777777654
No 112
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=98.46 E-value=5.7e-07 Score=54.85 Aligned_cols=65 Identities=15% Similarity=0.265 Sum_probs=50.7
Q ss_pred CCCCChhHHHHHHHHHhcCCCceeEeccCCC-CchhhhhhCCCCCccEEEeCCeee--eeHHHHHHHH
Q 029887 16 ILGDCPFSQRALLTLEEKKVPYKRHLINISD-KPQWFMEISPEGKVPVVKFDDKWV--ADSDVIVRII 80 (186)
Q Consensus 16 ~~~~sp~~~~vr~~L~~~gi~~~~~~~~~~~-~~~~~~~~~p~~~vP~L~~~g~~l--~eS~aI~~yL 80 (186)
...+||+|++++.+|.+.|++|+.+.++... ..+++.+.++...+|+++.+|..+ .++.+|-++|
T Consensus 6 ~~~~C~~C~~~~~~l~~~~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~~~~~~~g~~~~~i~~~i 73 (74)
T TIGR02196 6 TTPWCPPCKKAKEYLTSKGIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVIGHKIIVGFDPEKLDQLL 73 (74)
T ss_pred cCCCChhHHHHHHHHHHCCCeEEEEeccCCHHHHHHHHHHhCCCcccEEEECCEEEeeCCHHHHHHHh
Confidence 3458999999999999999999988776432 123466778889999999988776 6666666654
No 113
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=98.45 E-value=8.7e-07 Score=54.61 Aligned_cols=65 Identities=20% Similarity=0.289 Sum_probs=50.8
Q ss_pred CCCChhHHHHHHHHHhcCCCceeEeccCCC-CchhhhhhCCCC-CccEEEeCCeeeeeHHHHHHHHH
Q 029887 17 LGDCPFSQRALLTLEEKKVPYKRHLINISD-KPQWFMEISPEG-KVPVVKFDDKWVADSDVIVRIIE 81 (186)
Q Consensus 17 ~~~sp~~~~vr~~L~~~gi~~~~~~~~~~~-~~~~~~~~~p~~-~vP~L~~~g~~l~eS~aI~~yL~ 81 (186)
...||+|.+++-+|...|++|+.+.++... ..+++....+.. .+|++..+|..+.....+.++-.
T Consensus 7 ~~~Cp~C~~ak~~L~~~~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~i~g~~igg~~~~~~~~~ 73 (75)
T cd03418 7 KPNCPYCVRAKALLDKKGVDYEEIDVDGDPALREEMINRSGGRRTVPQIFIGDVHIGGCDDLYALER 73 (75)
T ss_pred CCCChHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCCCCccCEEEECCEEEeChHHHHHHHh
Confidence 357999999999999999999999887542 122344444544 89999999999999988887643
No 114
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=98.42 E-value=5.6e-07 Score=54.80 Aligned_cols=57 Identities=19% Similarity=0.385 Sum_probs=46.4
Q ss_pred CCCCChhHHHHHHHHHhcCCCceeEeccCCC-CchhhhhhCCCCCccEEEeCCeeeee
Q 029887 16 ILGDCPFSQRALLTLEEKKVPYKRHLINISD-KPQWFMEISPEGKVPVVKFDDKWVAD 72 (186)
Q Consensus 16 ~~~~sp~~~~vr~~L~~~gi~~~~~~~~~~~-~~~~~~~~~p~~~vP~L~~~g~~l~e 72 (186)
...+||+|.+++.+|.++|++|+.+.++... ..+++.+.+|.+.+|+++++|..+..
T Consensus 6 ~~~~c~~c~~~~~~l~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~~~~~i~g 63 (73)
T cd02976 6 TKPDCPYCKATKRFLDERGIPFEEVDVDEDPEALEELKKLNGYRSVPVVVIGDEHLSG 63 (73)
T ss_pred eCCCChhHHHHHHHHHHCCCCeEEEeCCCCHHHHHHHHHHcCCcccCEEEECCEEEec
Confidence 4458999999999999999999998887543 23457778899999999998865544
No 115
>cd03195 GST_C_4 GST_C family, unknown subfamily 4; composed of uncharacterized proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=98.39 E-value=1e-06 Score=59.00 Aligned_cols=60 Identities=18% Similarity=0.220 Sum_probs=45.7
Q ss_pred chHHHHHHHHHHHHHHHHhhCCCCcccCCCCChhHHHhhhHHHHHHHHhhhccCCCCCccchhhhccccC
Q 029887 117 DGTEQALLEELKALDEHLKTHGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYTKV 186 (186)
Q Consensus 117 ~~~~~~~~~~l~~le~~L~~~~~~yl~G~~~t~aDi~~~~~l~~~~~~~~~~~~~~~~~~~p~l~~w~~~ 186 (186)
+...+.+.+.+..+|..|+. +++||+| ++|+||+++++++.+.... +.+. + |++.+|.+|
T Consensus 41 ~~~~~~~~~~~~~le~~l~~-~~~~l~G-~fSiAD~~l~~~~~~~~~~-----g~~l-~--p~l~ay~~r 100 (114)
T cd03195 41 EAAQAAAEKLIAVAEALLPP-GAANLFG-EWCIADTDLALMLNRLVLN-----GDPV-P--ERLRDYARR 100 (114)
T ss_pred HHHHHHHHHHHHHHHHHHhc-CCCcccC-CccHHHHHHHHHHHHHHHc-----CCCC-C--HHHHHHHHH
Confidence 45677888999999999972 3489999 5999999999999887642 3333 2 777777654
No 116
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=98.32 E-value=1.9e-06 Score=53.68 Aligned_cols=68 Identities=22% Similarity=0.248 Sum_probs=54.6
Q ss_pred CCCCCChhHHHHHHHHHhcCCCceeEeccCCC-CchhhhhhCCCCCccEEEeCCeeeeeHHHHHHHHHH
Q 029887 15 DILGDCPFSQRALLTLEEKKVPYKRHLINISD-KPQWFMEISPEGKVPVVKFDDKWVADSDVIVRIIEE 82 (186)
Q Consensus 15 ~~~~~sp~~~~vr~~L~~~gi~~~~~~~~~~~-~~~~~~~~~p~~~vP~L~~~g~~l~eS~aI~~yL~~ 82 (186)
+....||+|.+++-+|+..|++|+.+.++... ..+++.+..+...+|++..+|..+.....+..+..+
T Consensus 4 y~~~~Cp~C~~a~~~L~~~~i~~~~~di~~~~~~~~~~~~~~g~~~vP~i~i~g~~igg~~~~~~~~~~ 72 (79)
T TIGR02181 4 YTKPYCPYCTRAKALLSSKGVTFTEIRVDGDPALRDEMMQRSGRRTVPQIFIGDVHVGGCDDLYALDRE 72 (79)
T ss_pred EecCCChhHHHHHHHHHHcCCCcEEEEecCCHHHHHHHHHHhCCCCcCEEEECCEEEcChHHHHHHHHc
Confidence 34468999999999999999999999887543 234466666778999999999998888887776544
No 117
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=98.24 E-value=1.9e-06 Score=52.80 Aligned_cols=53 Identities=17% Similarity=0.213 Sum_probs=40.8
Q ss_pred CCCCCChhHHHHHHHHHhcCCCceeEeccCCCCchhhhhhCCCCCccEEEeCC
Q 029887 15 DILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFMEISPEGKVPVVKFDD 67 (186)
Q Consensus 15 ~~~~~sp~~~~vr~~L~~~gi~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~g 67 (186)
|....||+|.+++-+|.++|++|+.+.++......+.....+...+|+++.+|
T Consensus 4 y~~~~Cp~C~~ak~~L~~~~i~~~~~di~~~~~~~~~~~~~g~~~vP~v~~~g 56 (72)
T TIGR02194 4 YSKNNCVQCKMTKKALEEHGIAFEEINIDEQPEAIDYVKAQGFRQVPVIVADG 56 (72)
T ss_pred EeCCCCHHHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHcCCcccCEEEECC
Confidence 44568999999999999999999999887544222333345667999999865
No 118
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=98.16 E-value=8.3e-06 Score=51.80 Aligned_cols=71 Identities=17% Similarity=0.222 Sum_probs=53.8
Q ss_pred CCCCCChhHHHHHHHHHhcC-----CCceeEeccCCC-CchhhhhhCCC--CCccEEEeCCeeeeeHHHHHHHHHHhCC
Q 029887 15 DILGDCPFSQRALLTLEEKK-----VPYKRHLINISD-KPQWFMEISPE--GKVPVVKFDDKWVADSDVIVRIIEEKYP 85 (186)
Q Consensus 15 ~~~~~sp~~~~vr~~L~~~g-----i~~~~~~~~~~~-~~~~~~~~~p~--~~vP~L~~~g~~l~eS~aI~~yL~~~~~ 85 (186)
+...+||||.+++-+|...+ ++|+.+.++... ..+++...... ..||++..+|..+..+..|..++.++++
T Consensus 5 ys~~~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~ifi~g~~igG~~dl~~~~~~~~~ 83 (86)
T TIGR02183 5 FGRPGCPYCVRAKQLAEKLAIERADFEFRYIDIHAEGISKADLEKTVGKPVETVPQIFVDEKHVGGCTDFEQLVKENFD 83 (86)
T ss_pred EeCCCCccHHHHHHHHHHhCcccCCCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEEECCEEecCHHHHHHHHHhccc
Confidence 33458999999999999985 567776665322 12335554443 6899999999999999999999988765
No 119
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=98.16 E-value=1.3e-05 Score=52.26 Aligned_cols=62 Identities=16% Similarity=0.136 Sum_probs=50.1
Q ss_pred CCChhHHHHHHHHHhcCCCceeEeccCCCCch----hhhhhCCCCCccEEEeCCeeeeeHHHHHHH
Q 029887 18 GDCPFSQRALLTLEEKKVPYKRHLINISDKPQ----WFMEISPEGKVPVVKFDDKWVADSDVIVRI 79 (186)
Q Consensus 18 ~~sp~~~~vr~~L~~~gi~~~~~~~~~~~~~~----~~~~~~p~~~vP~L~~~g~~l~eS~aI~~y 79 (186)
++||||.+++-+|...|++|+.+.++..+... .+...++..++|.+..+|..+.....+...
T Consensus 16 ~~Cp~C~~ak~~L~~~~i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~Vfi~g~~iGG~ddl~~l 81 (99)
T TIGR02189 16 SSCCMCHVVKRLLLTLGVNPAVHEIDKEPAGKDIENALSRLGCSPAVPAVFVGGKLVGGLENVMAL 81 (99)
T ss_pred CCCHHHHHHHHHHHHcCCCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeEEECCEEEcCHHHHHHH
Confidence 58999999999999999999999998643222 345556778999999999988888777664
No 120
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=98.15 E-value=1.7e-05 Score=49.57 Aligned_cols=65 Identities=20% Similarity=0.355 Sum_probs=54.3
Q ss_pred CCChhHHHHHHHHHhcCCCceeEeccCCCCc----hhhhhhCCCCCccEEEeCCeeeeeHHHHHHHHHH
Q 029887 18 GDCPFSQRALLTLEEKKVPYKRHLINISDKP----QWFMEISPEGKVPVVKFDDKWVADSDVIVRIIEE 82 (186)
Q Consensus 18 ~~sp~~~~vr~~L~~~gi~~~~~~~~~~~~~----~~~~~~~p~~~vP~L~~~g~~l~eS~aI~~yL~~ 82 (186)
.+||+|.+++-+|...+++|+.+.++..+.. ..+.+.+....+|++..+|..+.++..|..+..+
T Consensus 8 ~~Cp~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v~~~g~~igg~~~~~~~~~~ 76 (82)
T cd03419 8 SYCPYCKRAKSLLKELGVKPAVVELDQHEDGSEIQDYLQELTGQRTVPNVFIGGKFIGGCDDLMALHKS 76 (82)
T ss_pred CCCHHHHHHHHHHHHcCCCcEEEEEeCCCChHHHHHHHHHHhCCCCCCeEEECCEEEcCHHHHHHHHHc
Confidence 5899999999999999999999998876542 2345566677999999999999999999888654
No 121
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=98.13 E-value=2e-06 Score=50.73 Aligned_cols=54 Identities=28% Similarity=0.487 Sum_probs=44.3
Q ss_pred CCCChhHHHHHHHHHhcCCCceeEeccCCC-CchhhhhhCCCCCccEEEeCCeee
Q 029887 17 LGDCPFSQRALLTLEEKKVPYKRHLINISD-KPQWFMEISPEGKVPVVKFDDKWV 70 (186)
Q Consensus 17 ~~~sp~~~~vr~~L~~~gi~~~~~~~~~~~-~~~~~~~~~p~~~vP~L~~~g~~l 70 (186)
...||+|.+++-+|...|++|+.+.++..+ ..+++.+.....++|++..+|..+
T Consensus 6 ~~~C~~C~~~~~~L~~~~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i~g~~I 60 (60)
T PF00462_consen 6 KPGCPYCKKAKEFLDEKGIPYEEVDVDEDEEAREELKELSGVRTVPQVFIDGKFI 60 (60)
T ss_dssp STTSHHHHHHHHHHHHTTBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEETTEEE
T ss_pred cCCCcCHHHHHHHHHHcCCeeeEcccccchhHHHHHHHHcCCCccCEEEECCEEC
Confidence 468999999999999999999999998753 344466666788999999988653
No 122
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=98.11 E-value=1.8e-05 Score=51.50 Aligned_cols=64 Identities=23% Similarity=0.325 Sum_probs=49.6
Q ss_pred CCCChhHHHHHHHHHhcCCCceeEeccCCC-CchhhhhhCCCCCccEEEeCCeeeeeHHHHHHHH
Q 029887 17 LGDCPFSQRALLTLEEKKVPYKRHLINISD-KPQWFMEISPEGKVPVVKFDDKWVADSDVIVRII 80 (186)
Q Consensus 17 ~~~sp~~~~vr~~L~~~gi~~~~~~~~~~~-~~~~~~~~~p~~~vP~L~~~g~~l~eS~aI~~yL 80 (186)
.++||||.+++-+|...|++|+.+.+.-.. ...++.+.+...++|.+..+|..+.....+....
T Consensus 24 ~~~Cp~C~~ak~lL~~~~i~~~~~di~~~~~~~~~l~~~tg~~tvP~vfi~g~~iGG~ddl~~l~ 88 (97)
T TIGR00365 24 FPQCGFSARAVQILKACGVPFAYVNVLEDPEIRQGIKEYSNWPTIPQLYVKGEFVGGCDIIMEMY 88 (97)
T ss_pred CCCCchHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHhCCCCCCEEEECCEEEeChHHHHHHH
Confidence 458999999999999999999988775321 1223555667779999999999888877776653
No 123
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=98.10 E-value=2.1e-05 Score=50.37 Aligned_cols=64 Identities=20% Similarity=0.262 Sum_probs=51.1
Q ss_pred CCChhHHHHHHHHHhcCCCceeEeccCCC-CchhhhhhCCCCCccEEEeCCeeeeeHHHHHHHHH
Q 029887 18 GDCPFSQRALLTLEEKKVPYKRHLINISD-KPQWFMEISPEGKVPVVKFDDKWVADSDVIVRIIE 81 (186)
Q Consensus 18 ~~sp~~~~vr~~L~~~gi~~~~~~~~~~~-~~~~~~~~~p~~~vP~L~~~g~~l~eS~aI~~yL~ 81 (186)
++||||.+++-+|...|++|+.+.+.... ...++.+.+...++|.+..+|..+.....+.....
T Consensus 21 ~~Cp~C~~ak~~L~~~~i~y~~idv~~~~~~~~~l~~~~g~~tvP~vfi~g~~iGG~~~l~~l~~ 85 (90)
T cd03028 21 PRCGFSRKVVQILNQLGVDFGTFDILEDEEVRQGLKEYSNWPTFPQLYVNGELVGGCDIVKEMHE 85 (90)
T ss_pred CCCcHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHHHHHhCCCCCCEEEECCEEEeCHHHHHHHHH
Confidence 58999999999999999999999886432 12335556667799999999999988888877543
No 124
>PHA03050 glutaredoxin; Provisional
Probab=98.10 E-value=2.3e-05 Score=51.94 Aligned_cols=64 Identities=20% Similarity=0.287 Sum_probs=51.4
Q ss_pred CCCCCChhHHHHHHHHHhcCC---CceeEeccCCCC----chhhhhhCCCCCccEEEeCCeeeeeHHHHHH
Q 029887 15 DILGDCPFSQRALLTLEEKKV---PYKRHLINISDK----PQWFMEISPEGKVPVVKFDDKWVADSDVIVR 78 (186)
Q Consensus 15 ~~~~~sp~~~~vr~~L~~~gi---~~~~~~~~~~~~----~~~~~~~~p~~~vP~L~~~g~~l~eS~aI~~ 78 (186)
+..++||||.+++-+|...|+ +|+.+.++-... ..++.+.+...+||.+..+|..+.....+..
T Consensus 18 ys~~~CPyC~~ak~~L~~~~i~~~~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~IfI~g~~iGG~ddl~~ 88 (108)
T PHA03050 18 FVKFTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQITGGRTVPRIFFGKTSIGGYSDLLE 88 (108)
T ss_pred EECCCChHHHHHHHHHHHcCCCcCCcEEEECCCCCCCHHHHHHHHHHcCCCCcCEEEECCEEEeChHHHHH
Confidence 444689999999999999999 798988885322 2346677777899999999998888877765
No 125
>PF10568 Tom37: Outer mitochondrial membrane transport complex protein; InterPro: IPR019564 Tom37 is one of the outer membrane proteins that make up the TOM complex for guiding cytosolic mitochondrial beta-barrel proteins from the cytosol across the outer mitochondrial membrane into the intramembrane space. In conjunction with Tom70, it guides peptides without an mitochondrial targeting sequence (MTS) into Tom40, the protein that forms the passage through the outer membrane []. It has homology with metaxin, also part of the outer mitochondrial membrane beta-barrel protein transport complex []. This entry represents outer mitochondrial membrane transport complex proteins Tom37 and metaxin.; GO: 0006626 protein targeting to mitochondrion, 0005741 mitochondrial outer membrane
Probab=98.09 E-value=3.1e-05 Score=47.41 Aligned_cols=60 Identities=22% Similarity=0.242 Sum_probs=51.3
Q ss_pred CCCCCCChhHHHHHHHHHhcCCC---ceeEeccCCCCchhhhhhCCCCCccEEEe-CCeeeeeHHHHHHHH
Q 029887 14 PDILGDCPFSQRALLTLEEKKVP---YKRHLINISDKPQWFMEISPEGKVPVVKF-DDKWVADSDVIVRII 80 (186)
Q Consensus 14 ~~~~~~sp~~~~vr~~L~~~gi~---~~~~~~~~~~~~~~~~~~~p~~~vP~L~~-~g~~l~eS~aI~~yL 80 (186)
......+|-|.++.+.|+.++.+ |+.+..+- + ..+|.|++|+|.+ +++.+.+-..|++||
T Consensus 8 ~glpsid~ecLa~~~yl~~~~~~~~~~~vv~s~n----~---~~Sptg~LP~L~~~~~~~vsg~~~Iv~yL 71 (72)
T PF10568_consen 8 WGLPSIDPECLAVIAYLKFAGAPEQQFKVVPSNN----P---WLSPTGELPALIDSGGTWVSGFRNIVEYL 71 (72)
T ss_pred CCCCccCHHHHHHHHHHHhCCCCCceEEEEEcCC----C---CcCCCCCCCEEEECCCcEEECHHHHHHhh
Confidence 45667899999999999999999 87775542 2 2578999999999 889999999999997
No 126
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=97.98 E-value=1.8e-05 Score=48.68 Aligned_cols=58 Identities=17% Similarity=0.302 Sum_probs=44.2
Q ss_pred CCCChhHHHHHHHHHhcCCCceeEeccCCCC-chhhhhhC-CCCCccEEE-eCCeeeeeHH
Q 029887 17 LGDCPFSQRALLTLEEKKVPYKRHLINISDK-PQWFMEIS-PEGKVPVVK-FDDKWVADSD 74 (186)
Q Consensus 17 ~~~sp~~~~vr~~L~~~gi~~~~~~~~~~~~-~~~~~~~~-p~~~vP~L~-~~g~~l~eS~ 74 (186)
..+||+|++++..|.+.|++|+.+.++.... .+.+.+.+ +...+|+++ ++|..+.++.
T Consensus 7 ~~~C~~C~~~~~~L~~~~~~~~~idi~~~~~~~~~~~~~~~~~~~vP~i~~~~g~~l~~~~ 67 (77)
T TIGR02200 7 TTWCGYCAQLMRTLDKLGAAYEWVDIEEDEGAADRVVSVNNGNMTVPTVKFADGSFLTNPS 67 (77)
T ss_pred CCCChhHHHHHHHHHHcCCceEEEeCcCCHhHHHHHHHHhCCCceeCEEEECCCeEecCCC
Confidence 3589999999999999999999887765432 34455665 888999997 4666666543
No 127
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=97.84 E-value=0.00011 Score=45.95 Aligned_cols=66 Identities=17% Similarity=0.358 Sum_probs=53.4
Q ss_pred CCCChhHHHHHHHHHhcCCC--ceeEeccCCCCch----hhhhhCCCCCccEEEeCCeeeeeHHHHHHHHHH
Q 029887 17 LGDCPFSQRALLTLEEKKVP--YKRHLINISDKPQ----WFMEISPEGKVPVVKFDDKWVADSDVIVRIIEE 82 (186)
Q Consensus 17 ~~~sp~~~~vr~~L~~~gi~--~~~~~~~~~~~~~----~~~~~~p~~~vP~L~~~g~~l~eS~aI~~yL~~ 82 (186)
-.+||+|.+++-+|...+++ |+.+.++..+..+ .+.+......+|.+..+|..+..+..+..+..+
T Consensus 6 ~~~Cp~C~~~~~~L~~~~i~~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~i~g~~igg~~~~~~~~~~ 77 (84)
T TIGR02180 6 KSYCPYCKKAKEILAKLNVKPAYEVVELDQLSNGSEIQDYLEEITGQRTVPNIFINGKFIGGCSDLLALYKS 77 (84)
T ss_pred CCCChhHHHHHHHHHHcCCCCCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEEECCEEEcCHHHHHHHHHc
Confidence 35899999999999999999 9898888654332 244556667899999999999999988887654
No 128
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=97.48 E-value=0.00064 Score=47.53 Aligned_cols=77 Identities=13% Similarity=0.185 Sum_probs=55.9
Q ss_pred ceeehhhhcccCCCCCCCChhHHHHHHHHHhcCCCceeEeccCCC-CchhhhhhCCC----CCccEEEeCCeeeeeHHHH
Q 029887 2 AVEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISD-KPQWFMEISPE----GKVPVVKFDDKWVADSDVI 76 (186)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~sp~~~~vr~~L~~~gi~~~~~~~~~~~-~~~~~~~~~p~----~~vP~L~~~g~~l~eS~aI 76 (186)
+|++|.+-.+ .+-.++|+|.+++-+|+..||+|+.+.++... .-+++.+.... ..+|.+..+|..|.....+
T Consensus 1 ~VvlYttsl~---giR~t~~~C~~ak~iL~~~~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVFI~G~~IGG~del 77 (147)
T cd03031 1 RVVLYTTSLR---GVRKTFEDCNNVRAILESFRVKFDERDVSMDSGFREELRELLGAELKAVSLPRVFVDGRYLGGAEEV 77 (147)
T ss_pred CEEEEEcCCc---CCCCcChhHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEEECCEEEecHHHH
Confidence 3566666332 23447999999999999999999998887643 12345554433 6899999999998888887
Q ss_pred HHHHH
Q 029887 77 VRIIE 81 (186)
Q Consensus 77 ~~yL~ 81 (186)
.+.-+
T Consensus 78 ~~L~e 82 (147)
T cd03031 78 LRLNE 82 (147)
T ss_pred HHHHH
Confidence 76533
No 129
>PRK10824 glutaredoxin-4; Provisional
Probab=97.43 E-value=0.00071 Score=45.24 Aligned_cols=64 Identities=17% Similarity=0.197 Sum_probs=50.6
Q ss_pred CCCChhHHHHHHHHHhcCCCceeEeccCCC-CchhhhhhCCCCCccEEEeCCeeeeeHHHHHHHH
Q 029887 17 LGDCPFSQRALLTLEEKKVPYKRHLINISD-KPQWFMEISPEGKVPVVKFDDKWVADSDVIVRII 80 (186)
Q Consensus 17 ~~~sp~~~~vr~~L~~~gi~~~~~~~~~~~-~~~~~~~~~p~~~vP~L~~~g~~l~eS~aI~~yL 80 (186)
.+.||||.++.-+|...|++|..+.++... -...+...+...++|-+-.+|..+.....+....
T Consensus 27 ~p~Cpyc~~ak~lL~~~~i~~~~idi~~d~~~~~~l~~~sg~~TVPQIFI~G~~IGG~ddl~~l~ 91 (115)
T PRK10824 27 LPSCGFSAQAVQALSACGERFAYVDILQNPDIRAELPKYANWPTFPQLWVDGELVGGCDIVIEMY 91 (115)
T ss_pred CCCCchHHHHHHHHHHcCCCceEEEecCCHHHHHHHHHHhCCCCCCeEEECCEEEcChHHHHHHH
Confidence 358999999999999999999988776432 1234556667789999999999998887777653
No 130
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=97.26 E-value=0.001 Score=54.40 Aligned_cols=61 Identities=18% Similarity=0.287 Sum_probs=46.4
Q ss_pred CCChhHHHHHHHHHhcCCCceeEeccCCCCchhhhh---------hCCCCCccEEEeCCeeeeeHHHHHH
Q 029887 18 GDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFME---------ISPEGKVPVVKFDDKWVADSDVIVR 78 (186)
Q Consensus 18 ~~sp~~~~vr~~L~~~gi~~~~~~~~~~~~~~~~~~---------~~p~~~vP~L~~~g~~l~eS~aI~~ 78 (186)
++||+|.++.-+|...||+|+.+.++......++.+ ......||++..+|..+..-.....
T Consensus 10 ~~Cp~C~~aK~~L~~~gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi~~~~igGf~~l~~ 79 (410)
T PRK12759 10 TNCPFCDLAKSWFGANDIPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFVGDVHIGGYDNLMA 79 (410)
T ss_pred CCCHHHHHHHHHHHHCCCCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEECCEEEeCchHHHH
Confidence 589999999999999999999999984332222221 2356689999999988887777655
No 131
>PF14834 GST_C_4: Glutathione S-transferase, C-terminal domain; PDB: 3BBY_A.
Probab=97.15 E-value=0.00065 Score=44.90 Aligned_cols=67 Identities=19% Similarity=0.241 Sum_probs=44.1
Q ss_pred hhccccchHHHHhhcC------------CCCCchHHHHHHHHHHHHHHHHhhCCCCcccCCCCChhHHHhhhHHHHHHHH
Q 029887 97 SLGSKIFPSFVNFLKS------------KDPNDGTEQALLEELKALDEHLKTHGGPFIAGEKVTAVDLSLAPKLYHLQVA 164 (186)
Q Consensus 97 ~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~l~~le~~L~~~~~~yl~G~~~t~aDi~~~~~l~~~~~~ 164 (186)
++..|+++.|...... ..-.+.......+.+...+++|.. +++||+|+ .|+||..+++++.++...
T Consensus 10 ~vqAwlrSdf~~lR~Erpt~vvf~~~~~~pLs~~a~~~a~kL~~~a~~ll~~-g~~~LFGe-wsIAD~dlA~ml~Rl~~~ 87 (117)
T PF14834_consen 10 QVQAWLRSDFMALRQERPTNVVFRGARKPPLSEAAQAAAQKLIAVAERLLAD-GGPNLFGE-WSIADADLALMLNRLVTY 87 (117)
T ss_dssp HHHHHHHHS-HHHHHHS-THHHHS--------HHHHHHHHHHHHHHHHHTTT---SSTTSS---HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcccHHHHhhCChhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhcc-CCCCcccc-chHHHHHHHHHHHHHHHc
Confidence 3567777766543211 112456677788888888988876 68999995 999999999999998754
Q ss_pred h
Q 029887 165 L 165 (186)
Q Consensus 165 ~ 165 (186)
.
T Consensus 88 g 88 (117)
T PF14834_consen 88 G 88 (117)
T ss_dssp T
T ss_pred C
Confidence 3
No 132
>PTZ00062 glutaredoxin; Provisional
Probab=97.08 E-value=0.0027 Score=46.88 Aligned_cols=62 Identities=18% Similarity=0.179 Sum_probs=48.7
Q ss_pred CCChhHHHHHHHHHhcCCCceeEeccCCC-CchhhhhhCCCCCccEEEeCCeeeeeHHHHHHH
Q 029887 18 GDCPFSQRALLTLEEKKVPYKRHLINISD-KPQWFMEISPEGKVPVVKFDDKWVADSDVIVRI 79 (186)
Q Consensus 18 ~~sp~~~~vr~~L~~~gi~~~~~~~~~~~-~~~~~~~~~p~~~vP~L~~~g~~l~eS~aI~~y 79 (186)
+.||||.++.-+|...|++|+...+...+ ..+.+.+.+...++|.+..+|..+.....+...
T Consensus 126 p~C~~C~~~k~~L~~~~i~y~~~DI~~d~~~~~~l~~~sg~~TvPqVfI~G~~IGG~d~l~~l 188 (204)
T PTZ00062 126 PFCRFSNAVVNMLNSSGVKYETYNIFEDPDLREELKVYSNWPTYPQLYVNGELIGGHDIIKEL 188 (204)
T ss_pred CCChhHHHHHHHHHHcCCCEEEEEcCCCHHHHHHHHHHhCCCCCCeEEECCEEEcChHHHHHH
Confidence 57999999999999999999988776432 123355566667999999999988877776664
No 133
>cd03199 GST_C_GRX2 GST_C family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD (most GRXs range from 9-12kD). GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain, but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=97.08 E-value=0.0019 Score=43.92 Aligned_cols=61 Identities=23% Similarity=0.283 Sum_probs=46.7
Q ss_pred CchHHHHHHHHHHHHHHHHhhCCCCcccCCCCChhHHHhhhHHHHHHHHhhhccCCCCCccchhhhccccC
Q 029887 116 NDGTEQALLEELKALDEHLKTHGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYTKV 186 (186)
Q Consensus 116 ~~~~~~~~~~~l~~le~~L~~~~~~yl~G~~~t~aDi~~~~~l~~~~~~~~~~~~~~~~~~~p~l~~w~~~ 186 (186)
.....+++...|..++..+... . ..++.+|+-||.+|+.|+.+.. .+++.++ |++.+|+++
T Consensus 58 t~~~i~~l~~~L~~l~~ll~~~--~-~~n~~ls~DDi~lFp~LR~Lt~----vkgi~~P---~~V~~Y~~~ 118 (128)
T cd03199 58 TPQYIAALNALLEELDPLILSS--E-AVNGQLSTDDIILFPILRNLTL----VKGLVFP---PKVKAYLER 118 (128)
T ss_pred cHHHHHHHHHHHHHHHHHHcCc--c-ccCCcCCHHHHHHHHHHhhhhh----hcCCCCC---HHHHHHHHH
Confidence 3467788888999999999543 2 3556899999999999999875 5676554 678888753
No 134
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=96.90 E-value=0.0064 Score=39.88 Aligned_cols=64 Identities=17% Similarity=0.300 Sum_probs=52.0
Q ss_pred CCChhHHHHHHHHHhcCCCceeEeccCCCCchh----hhhhCCCCCccEEEeCCeeeeeHHHHHHHHH
Q 029887 18 GDCPFSQRALLTLEEKKVPYKRHLINISDKPQW----FMEISPEGKVPVVKFDDKWVADSDVIVRIIE 81 (186)
Q Consensus 18 ~~sp~~~~vr~~L~~~gi~~~~~~~~~~~~~~~----~~~~~p~~~vP~L~~~g~~l~eS~aI~~yL~ 81 (186)
.+||||.+++-+|...|+++..+++|..+...+ +.+.....++|.+..+|..+.....+..+-.
T Consensus 22 s~C~~c~~~k~ll~~~~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI~Gk~iGG~~dl~~lh~ 89 (104)
T KOG1752|consen 22 SSCPYCHRAKELLSDLGVNPKVVELDEDEDGSEIQKALKKLTGQRTVPNVFIGGKFIGGASDLMALHK 89 (104)
T ss_pred CcCchHHHHHHHHHhCCCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEECCEEEcCHHHHHHHHH
Confidence 489999999999999999999999997653322 3445556799999999999999888887643
No 135
>PF04399 Glutaredoxin2_C: Glutaredoxin 2, C terminal domain; InterPro: IPR007494 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. Unlike other glutaredoxins, glutaredoxin 2 (Grx2) cannot reduce ribonucleotide reductase. Grx2 has significantly higher catalytic activity in the reduction of mixed disulphides with glutathione (GSH) compared with other glutaredoxins. The active site residues (Cys9-Pro10-Tyr11-Cys12, in Escherichia coli Grx2, P39811 from SWISSPROT), which are found at the interface between the N- and C-terminal domains are identical to other glutaredoxins, but there is no other similarity between glutaredoxin 2 and other glutaredoxins. Grx2 is structurally similar to glutathione-S-transferases (GST), but there is no obvious sequence similarity. The inter-domain contacts are mainly hydrophobic, suggesting that the two domains are unlikely to be stable on their own. Both domains are needed for correct folding and activity of Grx2. It is thought that the primary function of Grx2 is to catalyse reversible glutathionylation of proteins with GSH in cellular redox regulation including the response to oxidative stress. The N-terminal domain is IPR004045 from INTERPRO.; PDB: 1G7O_A 3IR4_A.
Probab=96.71 E-value=0.0018 Score=44.35 Aligned_cols=59 Identities=22% Similarity=0.277 Sum_probs=41.2
Q ss_pred chHHHHHHHHHHHHHHHHhhCCCCcccCCCCChhHHHhhhHHHHHHHHhhhccCCCCCccchhhhcccc
Q 029887 117 DGTEQALLEELKALDEHLKTHGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYTK 185 (186)
Q Consensus 117 ~~~~~~~~~~l~~le~~L~~~~~~yl~G~~~t~aDi~~~~~l~~~~~~~~~~~~~~~~~~~p~l~~w~~ 185 (186)
+....++...|..+|..|... .-.+.++|+-||.+|+.|+.+.. .+++.++ |++++|++
T Consensus 58 ~~~i~~l~~~L~~Le~ll~~~---~~~n~~LS~dDi~lFp~LR~Lti----vkgi~~P---~~V~~Y~~ 116 (132)
T PF04399_consen 58 PELIAELNADLEELEPLLASP---NAVNGELSIDDIILFPILRSLTI----VKGIQWP---PKVRAYMD 116 (132)
T ss_dssp HHHHHHHHHHHHHHHHH-SCT---TBTTSS--HHHHHHHHHHHHHCT----CTTS------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccc---cccCCCCCHHHHHHHHHHhhhhh----ccCCcCC---HHHHHHHH
Confidence 456678888899999998853 34445899999999999998874 6776664 67888765
No 136
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=96.47 E-value=0.016 Score=35.65 Aligned_cols=57 Identities=19% Similarity=0.171 Sum_probs=41.4
Q ss_pred CceeehhhhcccCCCCCCCChhHHHH----HHHHHhcCCCceeEeccCCCCchhhhhhCCCCCccEEEeCCeeee
Q 029887 1 MAVEICVKAAVGAPDILGDCPFSQRA----LLTLEEKKVPYKRHLINISDKPQWFMEISPEGKVPVVKFDDKWVA 71 (186)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~sp~~~~v----r~~L~~~gi~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~g~~l~ 71 (186)
|.|++|.. +||.|..+ .-++.+.|++++.+.++ + .++ ........+|+++.+|..+.
T Consensus 1 m~i~~~a~----------~C~~C~~~~~~~~~~~~e~~~~~~~~~v~--~-~~~-a~~~~v~~vPti~i~G~~~~ 61 (76)
T TIGR00412 1 MKIQIYGT----------GCANCQMTEKNVKKAVEELGIDAEFEKVT--D-MNE-ILEAGVTATPGVAVDGELVI 61 (76)
T ss_pred CEEEEECC----------CCcCHHHHHHHHHHHHHHcCCCeEEEEeC--C-HHH-HHHcCCCcCCEEEECCEEEE
Confidence 67777764 89999998 56888889998888887 2 122 22345678999998885543
No 137
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=96.19 E-value=0.015 Score=34.58 Aligned_cols=51 Identities=12% Similarity=0.106 Sum_probs=35.2
Q ss_pred CCChhHHHHHHHHHhc-----CCCceeEeccCCCCchhhhhhCCCCCccEEEeCCeeee
Q 029887 18 GDCPFSQRALLTLEEK-----KVPYKRHLINISDKPQWFMEISPEGKVPVVKFDDKWVA 71 (186)
Q Consensus 18 ~~sp~~~~vr~~L~~~-----gi~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~g~~l~ 71 (186)
.+||+|.+++-+|.+. +++|..+.++ + .++..+......+|++..+|..++
T Consensus 9 ~~C~~C~~~~~~l~~l~~~~~~i~~~~id~~--~-~~~l~~~~~i~~vPti~i~~~~~~ 64 (67)
T cd02973 9 PTCPYCPDAVQAANRIAALNPNISAEMIDAA--E-FPDLADEYGVMSVPAIVINGKVEF 64 (67)
T ss_pred CCCCCcHHHHHHHHHHHHhCCceEEEEEEcc--c-CHhHHHHcCCcccCEEEECCEEEE
Confidence 4899999999998865 4555555443 2 234555555668999998886554
No 138
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=95.89 E-value=0.049 Score=35.89 Aligned_cols=70 Identities=17% Similarity=0.256 Sum_probs=49.4
Q ss_pred CCChhHHHHHHHHHhcC---CCceeEeccCCCCchhhhhhC--CCCCccEEEe-CC-------------eeeeeHHHHHH
Q 029887 18 GDCPFSQRALLTLEEKK---VPYKRHLINISDKPQWFMEIS--PEGKVPVVKF-DD-------------KWVADSDVIVR 78 (186)
Q Consensus 18 ~~sp~~~~vr~~L~~~g---i~~~~~~~~~~~~~~~~~~~~--p~~~vP~L~~-~g-------------~~l~eS~aI~~ 78 (186)
..||.|..+.=+|..-= -..++++|+....-....+.- .+..+|+|+- +| ..|.++..|+.
T Consensus 22 f~Cp~c~~iEGlLa~~P~l~~~ldV~rV~f~RPR~~vi~llGE~~QslPvLVL~~~~~~~~~~~~~~~~rfi~d~~~I~~ 101 (112)
T PF11287_consen 22 FYCPHCAAIEGLLASFPDLRERLDVRRVDFPRPRQAVIALLGEANQSLPVLVLADGAPSPDDAGSHGGRRFIDDPRRILR 101 (112)
T ss_pred EECCchHHHHhHHhhChhhhhcccEEEeCCCCchHHHHHHhChhccCCCEEEeCCCCCCcccccccCCeEEeCCHHHHHH
Confidence 57999999998885432 245666666654444444442 2568999984 33 27999999999
Q ss_pred HHHHhCCCC
Q 029887 79 IIEEKYPEP 87 (186)
Q Consensus 79 yL~~~~~~~ 87 (186)
||.++|+.+
T Consensus 102 ~La~r~g~p 110 (112)
T PF11287_consen 102 YLAERHGFP 110 (112)
T ss_pred HHHHHcCCC
Confidence 999999854
No 139
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=95.83 E-value=0.05 Score=34.89 Aligned_cols=73 Identities=21% Similarity=0.368 Sum_probs=50.1
Q ss_pred eeehhhhcccCCCCCCCChhHHHHHHHHHhcCCCceeEeccCCC-CchhhhhhCC----CCCccEEEeCCeeeeeHHHHH
Q 029887 3 VEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISD-KPQWFMEISP----EGKVPVVKFDDKWVADSDVIV 77 (186)
Q Consensus 3 ~~~~~~~~~~~~~~~~~sp~~~~vr~~L~~~gi~~~~~~~~~~~-~~~~~~~~~p----~~~vP~L~~~g~~l~eS~aI~ 77 (186)
|++|..-.+|... .--.|++++.+|..+||+|+.+.++..+ ..+++.+..+ ...+|-+..+|..+.....+.
T Consensus 2 i~vY~ts~~g~~~---~k~~~~~v~~lL~~k~I~f~eiDI~~d~~~r~em~~~~~~~~g~~tvPQIFi~~~~iGg~ddl~ 78 (92)
T cd03030 2 IKVYIASSSGSTE---IKKRQQEVLGFLEAKKIEFEEVDISMNEENRQWMRENVPNENGKPLPPQIFNGDEYCGDYEAFF 78 (92)
T ss_pred EEEEEecccccHH---HHHHHHHHHHHHHHCCCceEEEecCCCHHHHHHHHHhcCCCCCCCCCCEEEECCEEeeCHHHHH
Confidence 5666664433211 2234788999999999999999998654 2234555543 368899989998888876665
Q ss_pred H
Q 029887 78 R 78 (186)
Q Consensus 78 ~ 78 (186)
.
T Consensus 79 ~ 79 (92)
T cd03030 79 E 79 (92)
T ss_pred H
Confidence 5
No 140
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=95.54 E-value=0.019 Score=39.39 Aligned_cols=31 Identities=26% Similarity=0.302 Sum_probs=26.5
Q ss_pred CCCCCChhHHHHHHHHHhcCCCceeEeccCC
Q 029887 15 DILGDCPFSQRALLTLEEKKVPYKRHLINIS 45 (186)
Q Consensus 15 ~~~~~sp~~~~vr~~L~~~gi~~~~~~~~~~ 45 (186)
|+.+.||+|++++-.|...||+|+.+.+.-.
T Consensus 5 Y~~~~C~~C~ka~~~L~~~gi~~~~idi~~~ 35 (131)
T PRK01655 5 FTSPSCTSCRKAKAWLEEHDIPFTERNIFSS 35 (131)
T ss_pred EeCCCChHHHHHHHHHHHcCCCcEEeeccCC
Confidence 3445899999999999999999999988643
No 141
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=95.17 E-value=0.031 Score=37.30 Aligned_cols=31 Identities=19% Similarity=0.304 Sum_probs=26.4
Q ss_pred CCCCCChhHHHHHHHHHhcCCCceeEeccCC
Q 029887 15 DILGDCPFSQRALLTLEEKKVPYKRHLINIS 45 (186)
Q Consensus 15 ~~~~~sp~~~~vr~~L~~~gi~~~~~~~~~~ 45 (186)
|+...||+|++++-.|...|++|+.+.+.-.
T Consensus 5 Y~~~~C~~c~ka~~~L~~~gi~~~~idi~~~ 35 (115)
T cd03032 5 YTSPSCSSCRKAKQWLEEHQIPFEERNLFKQ 35 (115)
T ss_pred EeCCCCHHHHHHHHHHHHCCCceEEEecCCC
Confidence 3445899999999999999999999988543
No 142
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.98 E-value=0.14 Score=33.04 Aligned_cols=76 Identities=18% Similarity=0.232 Sum_probs=52.3
Q ss_pred ceeehhhhcccCCCCCCCChhHHHHHHHHHhcC-CCceeEeccCCC-CchhhhhhCCCCCccEEEeCCeeeeeHHHHHHH
Q 029887 2 AVEICVKAAVGAPDILGDCPFSQRALLTLEEKK-VPYKRHLINISD-KPQWFMEISPEGKVPVVKFDDKWVADSDVIVRI 79 (186)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~sp~~~~vr~~L~~~g-i~~~~~~~~~~~-~~~~~~~~~p~~~vP~L~~~g~~l~eS~aI~~y 79 (186)
++.||+|.. ..++.|.|+.++-=+|..+| ++|..+.+-.++ -.+.+++.+.=.+.|-|-.+|.-+..|.-|.+.
T Consensus 16 ~VvLFMKGt----p~~P~CGFS~~~vqiL~~~g~v~~~~vnVL~d~eiR~~lk~~s~WPT~PQLyi~GEfvGG~DIv~Em 91 (105)
T COG0278 16 PVVLFMKGT----PEFPQCGFSAQAVQILSACGVVDFAYVDVLQDPEIRQGLKEYSNWPTFPQLYVNGEFVGGCDIVREM 91 (105)
T ss_pred ceEEEecCC----CCCCCCCccHHHHHHHHHcCCcceeEEeeccCHHHHhccHhhcCCCCCceeeECCEEeccHHHHHHH
Confidence 467888853 24678999999999999999 677666554332 112233334446899999999888888776665
Q ss_pred HH
Q 029887 80 IE 81 (186)
Q Consensus 80 L~ 81 (186)
..
T Consensus 92 ~q 93 (105)
T COG0278 92 YQ 93 (105)
T ss_pred HH
Confidence 43
No 143
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=94.74 E-value=0.035 Score=36.83 Aligned_cols=33 Identities=21% Similarity=0.108 Sum_probs=27.9
Q ss_pred CCCCCCChhHHHHHHHHHhcCCCceeEeccCCC
Q 029887 14 PDILGDCPFSQRALLTLEEKKVPYKRHLINISD 46 (186)
Q Consensus 14 ~~~~~~sp~~~~vr~~L~~~gi~~~~~~~~~~~ 46 (186)
.|+...||+|.+++-.|.+.|++|+.+.+....
T Consensus 3 iY~~~~C~~c~ka~~~L~~~~i~~~~idi~~~~ 35 (111)
T cd03036 3 FYEYPKCSTCRKAKKWLDEHGVDYTAIDIVEEP 35 (111)
T ss_pred EEECCCCHHHHHHHHHHHHcCCceEEecccCCc
Confidence 345568999999999999999999999886543
No 144
>KOG1147 consensus Glutamyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=94.71 E-value=0.026 Score=47.05 Aligned_cols=104 Identities=14% Similarity=0.138 Sum_probs=62.0
Q ss_pred CeeeeeHHHHHHHHHHhCCC-CCCCCC-hHHHhhccccchHHHHhhcCCCCCchHHHHHHHHHHHHHHHHhhCCCCcccC
Q 029887 67 DKWVADSDVIVRIIEEKYPE-PSLTNP-PEFASLGSKIFPSFVNFLKSKDPNDGTEQALLEELKALDEHLKTHGGPFIAG 144 (186)
Q Consensus 67 g~~l~eS~aI~~yL~~~~~~-~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~yl~G 144 (186)
|..+..+..+..|....... +.++++ .++..+-.|+..... ..-..+...+..++..|... +||+|
T Consensus 45 ~~~l~~a~~~~~~~~~~~~~~~~lf~~~~d~~~vd~w~~~s~~----------~~~~~~s~~~~~ld~~l~~~--t~lvg 112 (712)
T KOG1147|consen 45 GRKLNGATEPVVYSAALAKADPKLFGNNIDRSQVDHWVSFSST----------FSFDEISSSLSELDKFLVLR--TFLVG 112 (712)
T ss_pred cccccCCccchhhhhhhcccCHhHcCCcccHHHHHHHHHHhhh----------cchHHHHHHHHHHHhhhhHH--HHhhc
Confidence 44445555555554432222 234443 344444444432211 22355677788889988887 89999
Q ss_pred CCCChhHHHhhhHHHHHHHHhhhccCCCCCccchhhhcccc
Q 029887 145 EKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYTK 185 (186)
Q Consensus 145 ~~~t~aDi~~~~~l~~~~~~~~~~~~~~~~~~~p~l~~w~~ 185 (186)
.++|+||+++|+.+..-....+.++. -+.+.++.+|++
T Consensus 113 ~sls~Ad~aiw~~l~~n~~~~~~lk~---~k~~~~v~Rw~~ 150 (712)
T KOG1147|consen 113 NSLSIADFAIWGALHSNGMRQEQLKA---KKDYQNVERWYD 150 (712)
T ss_pred cchhHHHHHHHHHHhcccchHHHHHh---hCCchhhhhhcC
Confidence 99999999999998874322222221 145677888874
No 145
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=94.55 E-value=0.11 Score=31.85 Aligned_cols=51 Identities=20% Similarity=0.177 Sum_probs=34.0
Q ss_pred CChhHHHHHH----HHHhcCCCceeEeccCCCCchhhhhhCCCCCccEEEeCCeeeeeH
Q 029887 19 DCPFSQRALL----TLEEKKVPYKRHLINISDKPQWFMEISPEGKVPVVKFDDKWVADS 73 (186)
Q Consensus 19 ~sp~~~~vr~----~L~~~gi~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~g~~l~eS 73 (186)
.||+|.++.- ++...|++++.+.+ . ..++. .......+|+++.||...+..
T Consensus 9 ~C~~C~~~~~~~~~~~~~~~i~~ei~~~--~-~~~~~-~~ygv~~vPalvIng~~~~~G 63 (76)
T PF13192_consen 9 GCPYCPELVQLLKEAAEELGIEVEIIDI--E-DFEEI-EKYGVMSVPALVINGKVVFVG 63 (76)
T ss_dssp SCTTHHHHHHHHHHHHHHTTEEEEEEET--T-THHHH-HHTT-SSSSEEEETTEEEEES
T ss_pred CCCCcHHHHHHHHHHHHhcCCeEEEEEc--c-CHHHH-HHcCCCCCCEEEECCEEEEEe
Confidence 5999986665 55666777766655 2 23334 556678999999998655543
No 146
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=94.52 E-value=0.051 Score=35.57 Aligned_cols=30 Identities=27% Similarity=0.171 Sum_probs=26.4
Q ss_pred CCCCCChhHHHHHHHHHhcCCCceeEeccC
Q 029887 15 DILGDCPFSQRALLTLEEKKVPYKRHLINI 44 (186)
Q Consensus 15 ~~~~~sp~~~~vr~~L~~~gi~~~~~~~~~ 44 (186)
|+...||+|++++-.|..+|++|+.+.+.-
T Consensus 4 Y~~~~C~~c~ka~~~L~~~~i~~~~idi~~ 33 (105)
T cd02977 4 YGNPNCSTSRKALAWLEEHGIEYEFIDYLK 33 (105)
T ss_pred EECCCCHHHHHHHHHHHHcCCCcEEEeecc
Confidence 445689999999999999999999998864
No 147
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=94.46 E-value=0.07 Score=36.61 Aligned_cols=32 Identities=16% Similarity=0.296 Sum_probs=27.3
Q ss_pred CCCCCChhHHHHHHHHHhcCCCceeEeccCCC
Q 029887 15 DILGDCPFSQRALLTLEEKKVPYKRHLINISD 46 (186)
Q Consensus 15 ~~~~~sp~~~~vr~~L~~~gi~~~~~~~~~~~ 46 (186)
|+.+.|+.|++++-.|...|++|+.+.+.-..
T Consensus 5 Y~~~~C~~crkA~~~L~~~~i~~~~~d~~~~~ 36 (132)
T PRK13344 5 YTISSCTSCKKAKTWLNAHQLSYKEQNLGKEP 36 (132)
T ss_pred EeCCCCHHHHHHHHHHHHcCCCeEEEECCCCC
Confidence 34468999999999999999999999887543
No 148
>PF09635 MetRS-N: MetRS-N binding domain; InterPro: IPR018285 This entry represents the N-terminal domain of methionyl-tRNA synthetase (MetRS). This N-terminal appended domain mediates non-catalytic complex formation through its interaction with a domain in the tRNA aminoacylation cofactor Arc1p. The interacting domains of MetRS, GluRS (glutamyl-tRNA synthetase) and Arc1p form a ternary complex resembling a classical GST homo-dimer []. Domain-swapping between symmetrically related MetRS-N and Arc1p-N domains generates a 2:2 tetramer held together by van der Waals forces. This domain is necessary for formation of the aminoacyl-tRNA synthetase complex necessary for tRNA nuclear export and shuttling as part of the translational apparatus. ; PDB: 2HSN_A.
Probab=93.76 E-value=0.15 Score=34.20 Aligned_cols=28 Identities=18% Similarity=0.287 Sum_probs=14.3
Q ss_pred CccEEEe--CCeeeeeHHHHHHHHHHhCCC
Q 029887 59 KVPVVKF--DDKWVADSDVIVRIIEEKYPE 86 (186)
Q Consensus 59 ~vP~L~~--~g~~l~eS~aI~~yL~~~~~~ 86 (186)
.-|-|.+ +|..++|+.||++|+..-|-.
T Consensus 35 ~~~~L~~~~~gF~L~e~NAIvrYl~nDF~~ 64 (122)
T PF09635_consen 35 SGPLLKDKKSGFELFEPNAIVRYLANDFEG 64 (122)
T ss_dssp -S--EEE-S--S----HHHHHHHHTT--TT
T ss_pred ccceeeecCCceEEecccHHHHHHHhhcCC
Confidence 4488865 579999999999999987764
No 149
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=93.12 E-value=0.097 Score=35.02 Aligned_cols=31 Identities=19% Similarity=0.100 Sum_probs=26.8
Q ss_pred CCCCCCChhHHHHHHHHHhcCCCceeEeccC
Q 029887 14 PDILGDCPFSQRALLTLEEKKVPYKRHLINI 44 (186)
Q Consensus 14 ~~~~~~sp~~~~vr~~L~~~gi~~~~~~~~~ 44 (186)
.|+...||+|++++-+|.+.|++|+.+.+.-
T Consensus 3 iY~~~~C~~c~ka~~~L~~~~i~~~~idi~~ 33 (117)
T TIGR01617 3 VYGSPNCTTCKKARRWLEANGIEYQFIDIGE 33 (117)
T ss_pred EEeCCCCHHHHHHHHHHHHcCCceEEEecCC
Confidence 3455689999999999999999999988764
No 150
>PF04908 SH3BGR: SH3-binding, glutamic acid-rich protein; InterPro: IPR006993 This family of proteins, which contains SH3BGRL3, is functionally uncharacterised. SH3BGRL3 is a highly conserved small protein, which is widely expressed and shows a significant similarity to glutaredoxin 1 (GRX1) of Escherichia coli which is predicted to belong to the thioredoxin superfamily. However, SH3BGRL3 lacks both conserved cysteine residues, which characterise the enzymatic active site of GRX. This structural feature raises the possibility that SH3BGRL3 and its homologues could function as endogenous modulators of GRX activity []. ; PDB: 1SJ6_A 1U6T_A 1WRY_A 1T1V_B 1J0F_A 2CT6_A.
Probab=93.11 E-value=0.1 Score=33.89 Aligned_cols=74 Identities=23% Similarity=0.384 Sum_probs=41.1
Q ss_pred CceeehhhhcccCCCCCCCChhHHHHHHHHHhcCCCceeEeccCCCC-chhhhhhC---------CCCCccEEEeCCeee
Q 029887 1 MAVEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISDK-PQWFMEIS---------PEGKVPVVKFDDKWV 70 (186)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~sp~~~~vr~~L~~~gi~~~~~~~~~~~~-~~~~~~~~---------p~~~vP~L~~~g~~l 70 (186)
|.|.+|..-.+|. ...-...+++..+|+.++|+|+.+.+...+. ..++++.. +....|-+..+|.-+
T Consensus 1 m~I~vy~ss~sg~---~~ikk~q~~v~~iL~a~kI~fe~vDIa~~e~~r~~mr~~~g~~~~~~~~~~~lpPqiF~~~~Y~ 77 (99)
T PF04908_consen 1 MVIKVYISSISGS---REIKKRQQRVLMILEAKKIPFEEVDIAMDEEARQWMRENAGPEEKDPGNGKPLPPQIFNGDEYC 77 (99)
T ss_dssp -SEEEEE-SS-SS---HHHHHHHHHHHHHHHHTT--EEEEETTT-HHHHHHHHHHT--CCCS-TSTT--S-EEEETTEEE
T ss_pred CEEEEEEecccCC---HHHHHHHHHHHHHHHHcCCCcEEEeCcCCHHHHHHHHHhccccccCCCCCCCCCCEEEeCCEEE
Confidence 7888998754432 1123457899999999999999988876442 22334333 122346777777666
Q ss_pred eeHHHHH
Q 029887 71 ADSDVIV 77 (186)
Q Consensus 71 ~eS~aI~ 77 (186)
.+=..+-
T Consensus 78 Gdye~f~ 84 (99)
T PF04908_consen 78 GDYEDFE 84 (99)
T ss_dssp EEHHHHH
T ss_pred eeHHHHH
Confidence 5544443
No 151
>PRK12559 transcriptional regulator Spx; Provisional
Probab=92.46 E-value=0.19 Score=34.43 Aligned_cols=32 Identities=22% Similarity=0.297 Sum_probs=27.3
Q ss_pred CCCCCChhHHHHHHHHHhcCCCceeEeccCCC
Q 029887 15 DILGDCPFSQRALLTLEEKKVPYKRHLINISD 46 (186)
Q Consensus 15 ~~~~~sp~~~~vr~~L~~~gi~~~~~~~~~~~ 46 (186)
|+.+.|+.|++++-.|...|++|+.+.+....
T Consensus 5 Y~~~~C~~crkA~~~L~~~gi~~~~~di~~~~ 36 (131)
T PRK12559 5 YTTASCASCRKAKAWLEENQIDYTEKNIVSNS 36 (131)
T ss_pred EeCCCChHHHHHHHHHHHcCCCeEEEEeeCCc
Confidence 44468999999999999999999999887544
No 152
>PF11801 Tom37_C: Tom37 C-terminal domain; InterPro: IPR019564 Tom37 is one of the outer membrane proteins that make up the TOM complex for guiding cytosolic mitochondrial beta-barrel proteins from the cytosol across the outer mitochondrial membrane into the intramembrane space. In conjunction with Tom70, it guides peptides without an mitochondrial targeting sequence (MTS) into Tom40, the protein that forms the passage through the outer membrane []. It has homology with metaxin, also part of the outer mitochondrial membrane beta-barrel protein transport complex []. This entry represents outer mitochondrial membrane transport complex proteins Tom37 and metaxin.; GO: 0006626 protein targeting to mitochondrion, 0005741 mitochondrial outer membrane
Probab=92.35 E-value=0.6 Score=33.42 Aligned_cols=40 Identities=23% Similarity=0.237 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHhhC-CCCcccCCC-CChhHHHhhhHHHHHH
Q 029887 123 LLEELKALDEHLKTH-GGPFIAGEK-VTAVDLSLAPKLYHLQ 162 (186)
Q Consensus 123 ~~~~l~~le~~L~~~-~~~yl~G~~-~t~aDi~~~~~l~~~~ 162 (186)
-.+++..+++.|+.. ...|+.|+. +|-.||.+++.|..+.
T Consensus 113 a~~~l~~L~~~L~~~~~~~~~f~~~~psslD~L~~ayL~l~l 154 (168)
T PF11801_consen 113 AMECLSLLEELLGEWEEARYFFGDSKPSSLDCLAFAYLALLL 154 (168)
T ss_pred HHHHHHHHHHHHhhccccccccCCCCCCHHHHHHHHHHHHHh
Confidence 356788889998864 236788877 9999999998888654
No 153
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.87 E-value=0.79 Score=30.74 Aligned_cols=80 Identities=13% Similarity=0.121 Sum_probs=53.8
Q ss_pred eeehhhhcccCCCCCCCChhHHHHHH----HHHhcCCCceeEeccCCCCchhhhhhCCCC-------CccEEEe-C--Ce
Q 029887 3 VEICVKAAVGAPDILGDCPFSQRALL----TLEEKKVPYKRHLINISDKPQWFMEISPEG-------KVPVVKF-D--DK 68 (186)
Q Consensus 3 ~~~~~~~~~~~~~~~~~sp~~~~vr~----~L~~~gi~~~~~~~~~~~~~~~~~~~~p~~-------~vP~L~~-~--g~ 68 (186)
|-+|..++....++.+|||.|.++.= +|+++.-+...+++..++.+.|-...||+. -||.|.- + +.
T Consensus 28 ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~rp~Wk~p~n~FR~d~~~lt~vPTLlrw~~~~~ 107 (128)
T KOG3425|consen 28 IFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNRPYWKDPANPFRKDPGILTAVPTLLRWKRQPQ 107 (128)
T ss_pred EEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCCceEEEEEEecCCCcccCCCCccccCCCceeecceeeEEcCccc
Confidence 33455566667788899999998765 566677788889999888766655555543 4788863 3 35
Q ss_pred eeeeHHHHHHHHHH
Q 029887 69 WVADSDVIVRIIEE 82 (186)
Q Consensus 69 ~l~eS~aI~~yL~~ 82 (186)
.+.+...-...|.+
T Consensus 108 rL~~~q~~~~~Lve 121 (128)
T KOG3425|consen 108 RLDGLQCLNDHLVE 121 (128)
T ss_pred cchHhHhhHHHHHH
Confidence 66666555555543
No 154
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=91.85 E-value=0.27 Score=32.27 Aligned_cols=33 Identities=21% Similarity=0.188 Sum_probs=28.0
Q ss_pred CCCCCCChhHHHHHHHHHhcCCCceeEeccCCC
Q 029887 14 PDILGDCPFSQRALLTLEEKKVPYKRHLINISD 46 (186)
Q Consensus 14 ~~~~~~sp~~~~vr~~L~~~gi~~~~~~~~~~~ 46 (186)
.|+.+.|+.|++++-.|.+.|++|+.+.+.-..
T Consensus 3 iy~~~~C~~crka~~~L~~~~i~~~~~di~~~p 35 (105)
T cd03035 3 LYGIKNCDTVKKARKWLEARGVAYTFHDYRKDG 35 (105)
T ss_pred EEeCCCCHHHHHHHHHHHHcCCCeEEEecccCC
Confidence 455678999999999999999999999886443
No 155
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=91.46 E-value=0.76 Score=28.46 Aligned_cols=55 Identities=24% Similarity=0.500 Sum_probs=37.9
Q ss_pred ceeehhhhcccCCCCCCCChhHHHHHHHHHhcC--CCceeEeccCCCCchhhhhhCCCCCccEEEeCC
Q 029887 2 AVEICVKAAVGAPDILGDCPFSQRALLTLEEKK--VPYKRHLINISDKPQWFMEISPEGKVPVVKFDD 67 (186)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~sp~~~~vr~~L~~~g--i~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~g 67 (186)
+|+||.+. .|+.|..++-+|+... .+++...+|..+.++ +..... -.+|||..+|
T Consensus 1 ~l~l~~k~---------~C~LC~~a~~~L~~~~~~~~~~l~~vDI~~d~~-l~~~Y~-~~IPVl~~~~ 57 (81)
T PF05768_consen 1 TLTLYTKP---------GCHLCDEAKEILEEVAAEFPFELEEVDIDEDPE-LFEKYG-YRIPVLHIDG 57 (81)
T ss_dssp -EEEEE-S---------SSHHHHHHHHHHHHCCTTSTCEEEEEETTTTHH-HHHHSC-TSTSEEEETT
T ss_pred CEEEEcCC---------CCChHHHHHHHHHHHHhhcCceEEEEECCCCHH-HHHHhc-CCCCEEEEcC
Confidence 35566664 6999999999999655 356677777765555 444443 4899999776
No 156
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=90.75 E-value=0.44 Score=26.50 Aligned_cols=49 Identities=20% Similarity=0.213 Sum_probs=30.8
Q ss_pred CCCChhHHHHHHHHH-----hcCCCceeEeccCCCCchhhhhhCCCCCccEEEe
Q 029887 17 LGDCPFSQRALLTLE-----EKKVPYKRHLINISDKPQWFMEISPEGKVPVVKF 65 (186)
Q Consensus 17 ~~~sp~~~~vr~~L~-----~~gi~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~ 65 (186)
..+|++|.+.+..+. ..++.+..+.++............+...+|+++.
T Consensus 6 ~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~ 59 (69)
T cd01659 6 APWCPFCQALRPVLAELALLNKGVKFEAVDVDEDPALEKELKRYGVGGVPTLVV 59 (69)
T ss_pred CCCChhHHhhhhHHHHHHhhCCCcEEEEEEcCCChHHhhHHHhCCCccccEEEE
Confidence 347899999999999 4445554444443222221224567889999874
No 157
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=90.62 E-value=0.34 Score=32.28 Aligned_cols=32 Identities=13% Similarity=-0.059 Sum_probs=27.3
Q ss_pred CCCCCCChhHHHHHHHHHhcCCCceeEeccCC
Q 029887 14 PDILGDCPFSQRALLTLEEKKVPYKRHLINIS 45 (186)
Q Consensus 14 ~~~~~~sp~~~~vr~~L~~~gi~~~~~~~~~~ 45 (186)
.|+.+.|+-|++++-.|.+.|++|+.+.+.-.
T Consensus 4 iy~~p~C~~crkA~~~L~~~gi~~~~~d~~~~ 35 (113)
T cd03033 4 FYEKPGCANNARQKALLEAAGHEVEVRDLLTE 35 (113)
T ss_pred EEECCCCHHHHHHHHHHHHcCCCcEEeehhcC
Confidence 45567899999999999999999999987643
No 158
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=90.03 E-value=1.1 Score=27.46 Aligned_cols=59 Identities=25% Similarity=0.090 Sum_probs=40.6
Q ss_pred CCCCCCCChhHHHHHHHHHhcCCCceeEeccCCC-----------CchhhhhhC--CCCCccEEE-eCCeeee
Q 029887 13 APDILGDCPFSQRALLTLEEKKVPYKRHLINISD-----------KPQWFMEIS--PEGKVPVVK-FDDKWVA 71 (186)
Q Consensus 13 ~~~~~~~sp~~~~vr~~L~~~gi~~~~~~~~~~~-----------~~~~~~~~~--p~~~vP~L~-~~g~~l~ 71 (186)
.++....||-|....--|+..++.|+.+.+.-+. ..++|.+.- ..--+|+|. ++|.++.
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl~v~yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gyiGIPall~~d~~vVl 77 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERLNVDYDFVEITESMANLKRFLHLRDSRPEFDEVKSNGYIGIPALLTDDGKVVL 77 (85)
T ss_pred eeeccccCcchHHHHHHHHHcCCCceeeehhhhhhhHHHHHhhhccchhHHhhhhcCcccceEEEeCCCcEEE
Confidence 3455568999999999999999999999887542 223444332 333579887 4555443
No 159
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=87.57 E-value=1.3 Score=29.72 Aligned_cols=31 Identities=23% Similarity=0.147 Sum_probs=25.6
Q ss_pred CCCCCChhHHHHHHHHHhcCCCceeEeccCC
Q 029887 15 DILGDCPFSQRALLTLEEKKVPYKRHLINIS 45 (186)
Q Consensus 15 ~~~~~sp~~~~vr~~L~~~gi~~~~~~~~~~ 45 (186)
|+.+.|.-|++++-.|++.||+|+.+.+.-.
T Consensus 6 y~~p~C~t~rka~~~L~~~gi~~~~~~y~~~ 36 (117)
T COG1393 6 YGNPNCSTCRKALAWLEEHGIEYTFIDYLKT 36 (117)
T ss_pred EeCCCChHHHHHHHHHHHcCCCcEEEEeecC
Confidence 3345688899999999999999999877643
No 160
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=87.44 E-value=1.8 Score=27.38 Aligned_cols=51 Identities=12% Similarity=-0.053 Sum_probs=33.5
Q ss_pred CCChhHHHHHHHHHhc-----CCCceeEeccCCCCchhhhhhCCCCCccEEEeCCeeee
Q 029887 18 GDCPFSQRALLTLEEK-----KVPYKRHLINISDKPQWFMEISPEGKVPVVKFDDKWVA 71 (186)
Q Consensus 18 ~~sp~~~~vr~~L~~~-----gi~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~g~~l~ 71 (186)
.+||+|..++-++... +++++.+.++ +. ++......-..+|.++.+|..+.
T Consensus 22 ~~C~~C~~~~~~~~~l~~~~~~i~~~~vd~~--~~-~e~a~~~~V~~vPt~vidG~~~~ 77 (89)
T cd03026 22 LSCHNCPDVVQALNLMAVLNPNIEHEMIDGA--LF-QDEVEERGIMSVPAIFLNGELFG 77 (89)
T ss_pred CCCCCcHHHHHHHHHHHHHCCCceEEEEEhH--hC-HHHHHHcCCccCCEEEECCEEEE
Confidence 5799999988877655 4555554443 22 33455566778999998885444
No 161
>PRK10026 arsenate reductase; Provisional
Probab=86.02 E-value=0.87 Score=31.62 Aligned_cols=33 Identities=9% Similarity=-0.119 Sum_probs=27.0
Q ss_pred CCCCCCChhHHHHHHHHHhcCCCceeEeccCCC
Q 029887 14 PDILGDCPFSQRALLTLEEKKVPYKRHLINISD 46 (186)
Q Consensus 14 ~~~~~~sp~~~~vr~~L~~~gi~~~~~~~~~~~ 46 (186)
.|+.+.|.-|++++-.|++.|++|+.+.+.-..
T Consensus 6 iY~~p~Cst~RKA~~wL~~~gi~~~~~d~~~~p 38 (141)
T PRK10026 6 IYHNPACGTSRNTLEMIRNSGTEPTIIHYLETP 38 (141)
T ss_pred EEeCCCCHHHHHHHHHHHHCCCCcEEEeeeCCC
Confidence 344457999999999999999999999876443
No 162
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=85.63 E-value=1.1 Score=30.41 Aligned_cols=32 Identities=13% Similarity=-0.058 Sum_probs=27.0
Q ss_pred CCCCCCChhHHHHHHHHHhcCCCceeEeccCC
Q 029887 14 PDILGDCPFSQRALLTLEEKKVPYKRHLINIS 45 (186)
Q Consensus 14 ~~~~~~sp~~~~vr~~L~~~gi~~~~~~~~~~ 45 (186)
.|+.+.|.-|++++-.|++.|++|+.+.+.-.
T Consensus 5 iY~~p~Cst~RKA~~~L~~~gi~~~~~d~~~~ 36 (126)
T TIGR01616 5 FYEKPGCANNARQKAALKASGHDVEVQDILKE 36 (126)
T ss_pred EEeCCCCHHHHHHHHHHHHCCCCcEEEeccCC
Confidence 45556899999999999999999999987643
No 163
>PHA02125 thioredoxin-like protein
Probab=84.74 E-value=3.1 Score=25.11 Aligned_cols=45 Identities=11% Similarity=0.054 Sum_probs=32.0
Q ss_pred CCChhHHHHHHHHHhcCCCceeEeccCCCCchhhhhhCCCCCccEEEe
Q 029887 18 GDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFMEISPEGKVPVVKF 65 (186)
Q Consensus 18 ~~sp~~~~vr~~L~~~gi~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~ 65 (186)
.+|+.|..+.-.|+. ++++...++..+ ..++.+.+.-..+|+++.
T Consensus 8 ~wC~~Ck~~~~~l~~--~~~~~~~vd~~~-~~~l~~~~~v~~~PT~~~ 52 (75)
T PHA02125 8 EWCANCKMVKPMLAN--VEYTYVDVDTDE-GVELTAKHHIRSLPTLVN 52 (75)
T ss_pred CCCHhHHHHHHHHHH--HhheEEeeeCCC-CHHHHHHcCCceeCeEEC
Confidence 489999999888864 566666676544 334666666778999983
No 164
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=83.52 E-value=3.1 Score=25.17 Aligned_cols=50 Identities=18% Similarity=0.202 Sum_probs=33.7
Q ss_pred CCChhHHHHHHHHHh----cCCCceeEeccCCCCchhhhhhCCCCCccEEEeCCe
Q 029887 18 GDCPFSQRALLTLEE----KKVPYKRHLINISDKPQWFMEISPEGKVPVVKFDDK 68 (186)
Q Consensus 18 ~~sp~~~~vr~~L~~----~gi~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~g~ 68 (186)
.+||+|..+.-.|+. .+..+....++..+. ++..+......+|++..+|.
T Consensus 9 ~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~-~~~~~~~~v~~vPt~~~~g~ 62 (82)
T TIGR00411 9 PTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMEN-PQKAMEYGIMAVPAIVINGD 62 (82)
T ss_pred CCCcchHHHHHHHHHHHHHhcCceEEEEEeCccC-HHHHHHcCCccCCEEEECCE
Confidence 589999998888754 344466666665443 33445556667999988774
No 165
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=82.77 E-value=4.5 Score=30.26 Aligned_cols=74 Identities=18% Similarity=0.266 Sum_probs=51.2
Q ss_pred ceeehhhhcccCCCCCCCChhHHHHHHHHHhcCCCceeEeccCCCC-chhhhhhCCCCCccEEEeCCeeeeeHHHHHHH
Q 029887 2 AVEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISDK-PQWFMEISPEGKVPVVKFDDKWVADSDVIVRI 79 (186)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~sp~~~~vr~~L~~~gi~~~~~~~~~~~~-~~~~~~~~p~~~vP~L~~~g~~l~eS~aI~~y 79 (186)
.+.+|.|.. ...+.|.|++++--+|+..|++|+...|--++- .+..+..+.=.+.|-|-.+|.-+....-|...
T Consensus 140 ~v~lFmKG~----p~~P~CGFS~~~v~iL~~~nV~~~~fdIL~DeelRqglK~fSdWPTfPQlyI~GEFiGGlDIl~~m 214 (227)
T KOG0911|consen 140 PVMLFMKGT----PEEPKCGFSRQLVGILQSHNVNYTIFDVLTDEELRQGLKEFSDWPTFPQLYVKGEFIGGLDILKEM 214 (227)
T ss_pred eEEEEecCC----CCcccccccHHHHHHHHHcCCCeeEEeccCCHHHHHHhhhhcCCCCccceeECCEeccCcHHHHHH
Confidence 356777753 345689999999999999999998887764321 12233445456889998888776665555443
No 166
>PRK10853 putative reductase; Provisional
Probab=81.14 E-value=2.9 Score=28.05 Aligned_cols=32 Identities=19% Similarity=0.238 Sum_probs=26.7
Q ss_pred CCCCCCChhHHHHHHHHHhcCCCceeEeccCC
Q 029887 14 PDILGDCPFSQRALLTLEEKKVPYKRHLINIS 45 (186)
Q Consensus 14 ~~~~~~sp~~~~vr~~L~~~gi~~~~~~~~~~ 45 (186)
.|+.+.|.-|++++-.|++.|++|+.+.+.-.
T Consensus 4 iy~~~~C~t~rkA~~~L~~~~i~~~~~d~~k~ 35 (118)
T PRK10853 4 LYGIKNCDTIKKARRWLEAQGIDYRFHDYRVD 35 (118)
T ss_pred EEcCCCCHHHHHHHHHHHHcCCCcEEeehccC
Confidence 44556899999999999999999999877643
No 167
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=78.78 E-value=2.9 Score=27.72 Aligned_cols=31 Identities=19% Similarity=0.076 Sum_probs=26.1
Q ss_pred CCCCCChhHHHHHHHHHhcCCCceeEeccCC
Q 029887 15 DILGDCPFSQRALLTLEEKKVPYKRHLINIS 45 (186)
Q Consensus 15 ~~~~~sp~~~~vr~~L~~~gi~~~~~~~~~~ 45 (186)
|+.+.|+-|++++-.|++.|++|+.+.+.-.
T Consensus 4 y~~~~C~t~rkA~~~L~~~~i~~~~~di~~~ 34 (114)
T TIGR00014 4 YHNPRCSKSRNTLALLEDKGIEPEVVKYLKN 34 (114)
T ss_pred EECCCCHHHHHHHHHHHHCCCCeEEEeccCC
Confidence 4456799999999999999999999877643
No 168
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=78.37 E-value=2.4 Score=27.80 Aligned_cols=29 Identities=24% Similarity=0.220 Sum_probs=21.9
Q ss_pred CCCCChhHHHHHHHHHhcCCCceeEeccC
Q 029887 16 ILGDCPFSQRALLTLEEKKVPYKRHLINI 44 (186)
Q Consensus 16 ~~~~sp~~~~vr~~L~~~gi~~~~~~~~~ 44 (186)
+.+.|.-|++++-.|++.|++|+.+.+.-
T Consensus 2 ~~~~C~t~rka~~~L~~~gi~~~~~d~~k 30 (110)
T PF03960_consen 2 GNPNCSTCRKALKWLEENGIEYEFIDYKK 30 (110)
T ss_dssp E-TT-HHHHHHHHHHHHTT--EEEEETTT
T ss_pred cCCCCHHHHHHHHHHHHcCCCeEeehhhh
Confidence 45679999999999999999999987764
No 169
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=78.02 E-value=2.8 Score=28.17 Aligned_cols=62 Identities=13% Similarity=0.225 Sum_probs=32.3
Q ss_pred CCCCCCChhHHHHHHHH----HhcCCCceeEeccCCCCchhhhhh-----CC---CCCccEEEe--CCeeeeeHHH
Q 029887 14 PDILGDCPFSQRALLTL----EEKKVPYKRHLINISDKPQWFMEI-----SP---EGKVPVVKF--DDKWVADSDV 75 (186)
Q Consensus 14 ~~~~~~sp~~~~vr~~L----~~~gi~~~~~~~~~~~~~~~~~~~-----~p---~~~vP~L~~--~g~~l~eS~a 75 (186)
..+.+|||.|.++.-.+ ..+.-....+.+..+++++|-... +| ...||+|+- ++..|.|...
T Consensus 32 ~~g~sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~~p~~~l~~IPTLi~~~~~~rL~e~e~ 107 (119)
T PF06110_consen 32 ETGQSWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFRTDPDLKLKGIPTLIRWETGERLVEEEC 107 (119)
T ss_dssp TTS-BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHHH--CC---SSSEEEECTSS-EEEHHHH
T ss_pred CCCCcccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCceEcceeeeeecceEEEECCCCccchhhh
Confidence 67788999999988644 443335566666665544332222 22 356899983 4466666543
No 170
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=76.65 E-value=4.3 Score=26.81 Aligned_cols=31 Identities=23% Similarity=0.017 Sum_probs=26.2
Q ss_pred CCCCCCChhHHHHHHHHHhcCCCceeEeccC
Q 029887 14 PDILGDCPFSQRALLTLEEKKVPYKRHLINI 44 (186)
Q Consensus 14 ~~~~~~sp~~~~vr~~L~~~gi~~~~~~~~~ 44 (186)
.|+.+.|+-|++++-.|++.|++|+.+.+.-
T Consensus 3 iy~~~~C~t~rkA~~~L~~~~i~~~~~di~~ 33 (112)
T cd03034 3 IYHNPRCSKSRNALALLEEAGIEPEIVEYLK 33 (112)
T ss_pred EEECCCCHHHHHHHHHHHHCCCCeEEEeccc
Confidence 3455689999999999999999999987753
No 171
>COG5515 Uncharacterized conserved small protein [Function unknown]
Probab=66.34 E-value=4.2 Score=23.69 Aligned_cols=27 Identities=19% Similarity=0.210 Sum_probs=21.2
Q ss_pred CceeehhhhcccCCCCCCCChhHHHHHHHHHh
Q 029887 1 MAVEICVKAAVGAPDILGDCPFSQRALLTLEE 32 (186)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~sp~~~~vr~~L~~ 32 (186)
|+++||-. ......|.||.||-.+|.+
T Consensus 1 ~~mKLYRf-----iTGpDDssFChrvta~LN~ 27 (70)
T COG5515 1 MKMKLYRF-----ITGPDDSSFCHRVTAALNK 27 (70)
T ss_pred CcceeeEe-----ecCCchHHHHHHHHHHHhC
Confidence 56777766 5666789999999988864
No 172
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=54.94 E-value=10 Score=32.14 Aligned_cols=68 Identities=15% Similarity=0.060 Sum_probs=39.3
Q ss_pred CCCCChhHHHHHHHHHhcCCC---ceeEeccCCCCchhhhhhCCCCCccEEEeCCeeeee----HHHHHHHHHHhC
Q 029887 16 ILGDCPFSQRALLTLEEKKVP---YKRHLINISDKPQWFMEISPEGKVPVVKFDDKWVAD----SDVIVRIIEEKY 84 (186)
Q Consensus 16 ~~~~sp~~~~vr~~L~~~gi~---~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~g~~l~e----S~aI~~yL~~~~ 84 (186)
....||||-.+.-+++..-+. ++...++-.. .+++.+...-..||.+..+|..+.+ -..++..+.+..
T Consensus 124 v~~~Cp~Cp~~v~~~~~~a~~~~~i~~~~id~~~-~~~~~~~~~v~~VP~~~i~~~~~~~g~~~~~~~~~~~~~~~ 198 (517)
T PRK15317 124 VSLSCHNCPDVVQALNLMAVLNPNITHTMIDGAL-FQDEVEARNIMAVPTVFLNGEEFGQGRMTLEEILAKLDTGA 198 (517)
T ss_pred EcCCCCCcHHHHHHHHHHHHhCCCceEEEEEchh-CHhHHHhcCCcccCEEEECCcEEEecCCCHHHHHHHHhccc
Confidence 345788888877766554443 3333333222 3345566667799999987754444 234555655543
No 173
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=54.84 E-value=8.9 Score=32.51 Aligned_cols=66 Identities=15% Similarity=0.096 Sum_probs=38.1
Q ss_pred CCCChhHHHHHHHHHhcCCC---ceeEeccCCCCchhhhhhCCCCCccEEEeCCeeeeeH----HHHHHHHHHh
Q 029887 17 LGDCPFSQRALLTLEEKKVP---YKRHLINISDKPQWFMEISPEGKVPVVKFDDKWVADS----DVIVRIIEEK 83 (186)
Q Consensus 17 ~~~sp~~~~vr~~L~~~gi~---~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~g~~l~eS----~aI~~yL~~~ 83 (186)
...||||-.+.-+++...+. ++...++-.. -+++.+......||.+..+|..+.+. ..++..+.+.
T Consensus 126 ~~~Cp~Cp~~v~~~~~~a~~~p~i~~~~id~~~-~~~~~~~~~v~~VP~~~i~~~~~~~g~~~~~~~~~~l~~~ 198 (515)
T TIGR03140 126 SLTCQNCPDVVQALNQMALLNPNISHTMIDGAL-FQDEVEALGIQGVPAVFLNGEEFHNGRMDLAELLEKLEET 198 (515)
T ss_pred eCCCCCCHHHHHHHHHHHHhCCCceEEEEEchh-CHHHHHhcCCcccCEEEECCcEEEecCCCHHHHHHHHhhc
Confidence 35789988877777655543 2222233222 23355666677999999877554442 3344555443
No 174
>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.
Probab=54.18 E-value=32 Score=23.28 Aligned_cols=66 Identities=20% Similarity=0.274 Sum_probs=29.4
Q ss_pred ceeehhhhcccCCCCCCCChhHHHHHH-----HHHhcCCCceeEeccCCCCchhh---------hhhCCCCCccEEEeCC
Q 029887 2 AVEICVKAAVGAPDILGDCPFSQRALL-----TLEEKKVPYKRHLINISDKPQWF---------MEISPEGKVPVVKFDD 67 (186)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~sp~~~~vr~-----~L~~~gi~~~~~~~~~~~~~~~~---------~~~~p~~~vP~L~~~g 67 (186)
+|++|.-++-=.-.+=+.+.--.-+|+ .|+..|++++ ++++...+..| ++......+|+...||
T Consensus 3 ~i~ifepamCC~tGvCG~~vd~eL~~~a~~~~~Lk~~gv~v~--RyNL~~~P~aF~~n~~V~~~L~~~G~e~LPitlVdG 80 (123)
T PF06953_consen 3 KIEIFEPAMCCSTGVCGPSVDPELVRFAADLDWLKEQGVEVE--RYNLAQNPQAFVENPEVNQLLQTEGAEALPITLVDG 80 (123)
T ss_dssp EEEEEE-S-SSTTS-SSSS--HHHHHHHHHHHHHHHTT-EEE--EEETTT-TTHHHHSHHHHHHHHHH-GGG-SEEEETT
T ss_pred ceEEeccccccccCccCCCCCHHHHHHHHHHHHHHhCCceEE--EEccccCHHHHHhCHHHHHHHHHcCcccCCEEEECC
Confidence 678888764211122223333333333 3466666554 44544433333 3444556799998887
Q ss_pred ee
Q 029887 68 KW 69 (186)
Q Consensus 68 ~~ 69 (186)
.+
T Consensus 81 ei 82 (123)
T PF06953_consen 81 EI 82 (123)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 175
>TIGR02681 phage_pRha phage regulatory protein, rha family. Members of this protein family are found in temperate phage and bacterial prophage regions. Members include the product of the rha gene of the lambdoid phage phi-80, a late operon gene. The presence of this gene interferes with infection of bacterial strains that lack integration host factor (IHF), which regulates the rha gene. It is suggested that pRha is a phage regulatory protein.
Probab=50.66 E-value=19 Score=23.73 Aligned_cols=26 Identities=19% Similarity=0.236 Sum_probs=21.3
Q ss_pred ccEEE-eCCeeeeeHHHHHHHHHHhCC
Q 029887 60 VPVVK-FDDKWVADSDVIVRIIEEKYP 85 (186)
Q Consensus 60 vP~L~-~~g~~l~eS~aI~~yL~~~~~ 85 (186)
+|.+. .+|.+++.|..|+++.+.+|.
T Consensus 2 ~~~v~~~~~~~~ttS~~IAe~fgK~H~ 28 (108)
T TIGR02681 2 FPKVFTKRNQVVTDSLTMAQMFGKRHD 28 (108)
T ss_pred CceEEEECCEEEEeHHHHHHHHCcchH
Confidence 35554 689999999999999998775
No 176
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=49.87 E-value=30 Score=22.64 Aligned_cols=47 Identities=19% Similarity=0.221 Sum_probs=30.3
Q ss_pred CCChhHHHHHHHHHhcCCC---ceeEeccCCCCchhhhhhCCCCCccEEEe
Q 029887 18 GDCPFSQRALLTLEEKKVP---YKRHLINISDKPQWFMEISPEGKVPVVKF 65 (186)
Q Consensus 18 ~~sp~~~~vr~~L~~~gi~---~~~~~~~~~~~~~~~~~~~p~~~vP~L~~ 65 (186)
.+||+|+.++-+|++..-. ++...++.. ..+++.....-..+|.+..
T Consensus 32 ~wC~~C~~~~~~l~~la~~~~~i~~~~vd~d-~~~~l~~~~~v~~vPt~~i 81 (113)
T cd02975 32 EGCQYCEVTKQLLEELSELSDKLKLEIYDFD-EDKEKAEKYGVERVPTTIF 81 (113)
T ss_pred CCCCChHHHHHHHHHHHHhcCceEEEEEeCC-cCHHHHHHcCCCcCCEEEE
Confidence 4899999888877654432 234444443 3445666666778998873
No 177
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=45.78 E-value=44 Score=28.73 Aligned_cols=52 Identities=15% Similarity=0.077 Sum_probs=33.6
Q ss_pred CCCChhHHHHHHH----HHhc-CCCceeEeccCCCCchhhhhhCCCCCccEEEeCCeeee
Q 029887 17 LGDCPFSQRALLT----LEEK-KVPYKRHLINISDKPQWFMEISPEGKVPVVKFDDKWVA 71 (186)
Q Consensus 17 ~~~sp~~~~vr~~----L~~~-gi~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~g~~l~ 71 (186)
...||||-.+.-+ ..+. +|..+.+.... . ++..+...-..+|.++.||..+.
T Consensus 485 ~~~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~~--~-~~~~~~~~v~~vP~~~i~~~~~~ 541 (555)
T TIGR03143 485 SLSCTLCPDVVLAAQRIASLNPNVEAEMIDVSH--F-PDLKDEYGIMSVPAIVVDDQQVY 541 (555)
T ss_pred CCCCCCcHHHHHHHHHHHHhCCCceEEEEECcc--c-HHHHHhCCceecCEEEECCEEEE
Confidence 3578888776653 3444 67776665543 2 34555566788999998875433
No 178
>PRK09266 hypothetical protein; Provisional
Probab=45.05 E-value=30 Score=26.52 Aligned_cols=57 Identities=21% Similarity=0.331 Sum_probs=41.1
Q ss_pred HHHhcCCCceeEeccCCC---CchhhhhhCCCCCccEEEeCCeeeeeHHHHHHHHHHhCC
Q 029887 29 TLEEKKVPYKRHLINISD---KPQWFMEISPEGKVPVVKFDDKWVADSDVIVRIIEEKYP 85 (186)
Q Consensus 29 ~L~~~gi~~~~~~~~~~~---~~~~~~~~~p~~~vP~L~~~g~~l~eS~aI~~yL~~~~~ 85 (186)
.+...|++++...+.+.+ .++.|.-.+-.|.+||-..++..+..+..|.+.|.+.|.
T Consensus 200 ~~~~~g~~v~e~~i~~~eL~~adevfltnSl~gi~pV~~i~~~~~~~~~~~~~~l~~~~~ 259 (266)
T PRK09266 200 GLERLGIPQRTRPVTLADLGRFAGAFACNAWRGQRAVSAIDDVALPDSHALLELLRRAYE 259 (266)
T ss_pred HHHHcCCeeEEEECCHHHHHHhhHhhhhcCccceEEEEEECCEECCCCchHHHHHHHHHH
Confidence 456779999988888654 445555545568999999888777655677777777664
No 179
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=43.86 E-value=96 Score=20.65 Aligned_cols=27 Identities=22% Similarity=0.299 Sum_probs=17.1
Q ss_pred CCCChhHHHHHHHHH----hcCCCceeEecc
Q 029887 17 LGDCPFSQRALLTLE----EKKVPYKRHLIN 43 (186)
Q Consensus 17 ~~~sp~~~~vr~~L~----~~gi~~~~~~~~ 43 (186)
..+||+|+.+.-.|. +.++++-.+.++
T Consensus 32 ~~~Cp~C~~~~P~l~~~~~~~~~~~y~vdvd 62 (122)
T TIGR01295 32 RKTCPYCRKFSGTLSGVVAQTKAPIYYIDSE 62 (122)
T ss_pred CCCChhHHHHhHHHHHHHHhcCCcEEEEECC
Confidence 348999999766553 344555555554
No 180
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=38.85 E-value=58 Score=25.35 Aligned_cols=58 Identities=14% Similarity=0.242 Sum_probs=42.8
Q ss_pred hHHHHHHHHHhcCCCceeEeccCCCC-chhhhhh----CCCCCccEEEeCCeeeeeHHHHHHH
Q 029887 22 FSQRALLTLEEKKVPYKRHLINISDK-PQWFMEI----SPEGKVPVVKFDDKWVADSDVIVRI 79 (186)
Q Consensus 22 ~~~~vr~~L~~~gi~~~~~~~~~~~~-~~~~~~~----~p~~~vP~L~~~g~~l~eS~aI~~y 79 (186)
-|..||.+|+--+|.|+...+.+... .+++..+ .-...+|.+-.+|.-|.....|.+.
T Consensus 149 ~C~~VR~ilesf~V~v~ERDVSMd~~fr~EL~~~lg~~~~~~~LPrVFV~GryIGgaeeV~~L 211 (281)
T KOG2824|consen 149 DCNAVRAILESFRVKVDERDVSMDSEFREELQELLGEDEKAVSLPRVFVKGRYIGGAEEVVRL 211 (281)
T ss_pred HHHHHHHHHHhCceEEEEecccccHHHHHHHHHHHhcccccCccCeEEEccEEeccHHHhhhh
Confidence 48889999999999999999988652 2223322 2245789777888888888777654
No 181
>cd05295 MDH_like Malate dehydrogenase-like. These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=36.77 E-value=80 Score=26.55 Aligned_cols=74 Identities=16% Similarity=0.313 Sum_probs=55.5
Q ss_pred CCChhHHHHHHHHHhcCC---CceeEeccC--CCCchhhhhhCC-----CCCccEEE----e-C--CeeeeeHHHHHHHH
Q 029887 18 GDCPFSQRALLTLEEKKV---PYKRHLINI--SDKPQWFMEISP-----EGKVPVVK----F-D--DKWVADSDVIVRII 80 (186)
Q Consensus 18 ~~sp~~~~vr~~L~~~gi---~~~~~~~~~--~~~~~~~~~~~p-----~~~vP~L~----~-~--g~~l~eS~aI~~yL 80 (186)
..|||-.|+.++..++.. .|.++.+.. .+|++|+.+++. .++.|++- | + |.-|.....-++|.
T Consensus 2 ~~cp~ya~~ellad~l~~~l~~f~~~ki~~~p~~w~~wl~~~c~~~~w~~~~spiiwrel~~rggkg~l~gg~~~f~e~~ 81 (452)
T cd05295 2 ADCPYYAKAELLADYLQKNLPDFRVHKIVKHPDEWEDWLQDLCKKNGWSHKRSPIIWRELLDRGGKGLLLGGCNEFLEYA 81 (452)
T ss_pred CCCchhHHHHHHHHHHHhhCCCceEEEccCChHHHHHHHHHHHHhcCCccCCCCeeHHHHHhcCCCceEecChHHHHHHH
Confidence 369999999999988765 466666553 347888776532 36789983 4 3 37999999999999
Q ss_pred HHhCCCCCCCC
Q 029887 81 EEKYPEPSLTN 91 (186)
Q Consensus 81 ~~~~~~~~l~~ 91 (186)
...|+..+.+.
T Consensus 82 ~~yyg~~s~m~ 92 (452)
T cd05295 82 ESYYGITSSMM 92 (452)
T ss_pred HHHhCcccccc
Confidence 99999765444
No 182
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=35.81 E-value=1.1e+02 Score=19.29 Aligned_cols=46 Identities=9% Similarity=-0.126 Sum_probs=27.1
Q ss_pred CCChhHHHHHHHH--------HhcCCCceeEeccCCCC---chhhhhhCCCCCccEEE
Q 029887 18 GDCPFSQRALLTL--------EEKKVPYKRHLINISDK---PQWFMEISPEGKVPVVK 64 (186)
Q Consensus 18 ~~sp~~~~vr~~L--------~~~gi~~~~~~~~~~~~---~~~~~~~~p~~~vP~L~ 64 (186)
.+|++|++..-.+ ...+ .+....++.... ..++.+...-..+|++.
T Consensus 21 ~wC~~C~~~~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~ 77 (104)
T cd02953 21 DWCVTCKVNEKVVFSDPEVQAALKK-DVVLLRADWTKNDPEITALLKRFGVFGPPTYL 77 (104)
T ss_pred chhHHHHHHHHHhcCCHHHHHHHhC-CeEEEEEecCCCCHHHHHHHHHcCCCCCCEEE
Confidence 3899998876433 2232 455566665432 23455555667789775
No 183
>KOG1668 consensus Elongation factor 1 beta/delta chain [Transcription]
Probab=34.80 E-value=24 Score=26.59 Aligned_cols=33 Identities=24% Similarity=0.403 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHhhCCCCcccCCCCChhHHHhhhHH
Q 029887 124 LEELKALDEHLKTHGGPFIAGEKVTAVDLSLAPKL 158 (186)
Q Consensus 124 ~~~l~~le~~L~~~~~~yl~G~~~t~aDi~~~~~l 158 (186)
...+..++..|..+ +|..|..++-+|+.+|..+
T Consensus 10 ~~glk~l~~sLA~k--s~~~g~~~s~edv~vf~al 42 (231)
T KOG1668|consen 10 PAGLKKLNKSLAEK--SYIEGYQLSKEDVVVFAAL 42 (231)
T ss_pred hhhhhhhhHhhhcc--cCCCCCCcccccceeehhc
Confidence 56788899999987 9999999999999999766
No 184
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=31.41 E-value=1.5e+02 Score=19.12 Aligned_cols=63 Identities=24% Similarity=0.424 Sum_probs=36.9
Q ss_pred CCChhHHHHHHHHHhcCC--CceeEeccCCCCchhhh---hhCC---CCCccEEEeCCe-eeeeHHHHHHHHHH
Q 029887 18 GDCPFSQRALLTLEEKKV--PYKRHLINISDKPQWFM---EISP---EGKVPVVKFDDK-WVADSDVIVRIIEE 82 (186)
Q Consensus 18 ~~sp~~~~vr~~L~~~gi--~~~~~~~~~~~~~~~~~---~~~p---~~~vP~L~~~g~-~l~eS~aI~~yL~~ 82 (186)
+.||+|.+..-.+...+- .++.+.+... ...+.. ..++ ...+-+ ..+|. .+..+.|+.+-+..
T Consensus 5 g~C~lC~~~~~~l~~~d~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~-~~~g~~~~~G~~A~~~l~~~ 76 (114)
T PF04134_consen 5 GDCPLCRREVRFLRRRDRGGRLRFVDIQSE-PDQALLASYGISPEDADSRLHL-IDDGERVYRGSDAVLRLLRR 76 (114)
T ss_pred CCCHhHHHHHHHHHhcCCCCCEEEEECCCh-hhhhHHHhcCcCHHHHcCeeEE-ecCCCEEEEcHHHHHHHHHH
Confidence 379999998888887775 3444444211 111111 1111 223333 55665 99999999887555
No 185
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=29.27 E-value=1.8e+02 Score=19.44 Aligned_cols=58 Identities=14% Similarity=0.078 Sum_probs=32.3
Q ss_pred CCCCCChhHHHHHHHH----HhcCCCceeEeccCCCC------chhhhhhCCCC-CccEEEe--CCeeeee
Q 029887 15 DILGDCPFSQRALLTL----EEKKVPYKRHLINISDK------PQWFMEISPEG-KVPVVKF--DDKWVAD 72 (186)
Q Consensus 15 ~~~~~sp~~~~vr~~L----~~~gi~~~~~~~~~~~~------~~~~~~~~p~~-~vP~L~~--~g~~l~e 72 (186)
.+..|||.|+...-.+ .+..-.+..+.++..+. ...+.....-. .+|++.. ++..+.|
T Consensus 35 ~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~~I~~~iPT~~~~~~~~~l~~ 105 (119)
T cd02952 35 DGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDPKLTTGVPTLLRWKTPQRLVE 105 (119)
T ss_pred CCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhccCcccCCCEEEEEcCCceecc
Confidence 6778999999776544 33222355566665432 23344433334 7998863 4444444
No 186
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=29.24 E-value=1.2e+02 Score=17.64 Aligned_cols=48 Identities=19% Similarity=0.156 Sum_probs=29.8
Q ss_pred CCChhHHHHHHHHHh-----cCCCceeEeccCCCCchhhhhhCCCCCccEEE--eCCe
Q 029887 18 GDCPFSQRALLTLEE-----KKVPYKRHLINISDKPQWFMEISPEGKVPVVK--FDDK 68 (186)
Q Consensus 18 ~~sp~~~~vr~~L~~-----~gi~~~~~~~~~~~~~~~~~~~~p~~~vP~L~--~~g~ 68 (186)
.+|++|....-.+.. .++.+-.+..+ . ...+........+|+++ .+|.
T Consensus 20 ~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~--~-~~~~~~~~~v~~~P~~~~~~~g~ 74 (93)
T cd02947 20 PWCGPCKAIAPVLEELAEEYPKVKFVKVDVD--E-NPELAEEYGVRSIPTFLFFKNGK 74 (93)
T ss_pred CCChhHHHhhHHHHHHHHHCCCceEEEEECC--C-ChhHHHhcCcccccEEEEEECCE
Confidence 379999988888876 55555444333 2 33355555566789876 3554
No 187
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=29.12 E-value=1.5e+02 Score=18.40 Aligned_cols=51 Identities=18% Similarity=0.086 Sum_probs=30.1
Q ss_pred CCChhHHHHHHHHHh----cCCCceeEeccCCCCchhhhhhCCCCCccEEE--eCCee
Q 029887 18 GDCPFSQRALLTLEE----KKVPYKRHLINISDKPQWFMEISPEGKVPVVK--FDDKW 69 (186)
Q Consensus 18 ~~sp~~~~vr~~L~~----~gi~~~~~~~~~~~~~~~~~~~~p~~~vP~L~--~~g~~ 69 (186)
.+|+.|....-.++. .+-.+....++... .+++.....-..+|++. .+|..
T Consensus 23 ~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~-~~~l~~~~~v~~vPt~~i~~~g~~ 79 (97)
T cd02949 23 PTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDE-DQEIAEAAGIMGTPTVQFFKDKEL 79 (97)
T ss_pred CCChhHHHHHHHHHHHHHHhCCceEEEEEECCC-CHHHHHHCCCeeccEEEEEECCeE
Confidence 489999988877755 11134445555433 33455555556889775 35543
No 188
>PF10990 DUF2809: Protein of unknown function (DUF2809); InterPro: IPR021257 Some members in this family of proteins are annotated as yjgA however currently no function for the protein is known.
Probab=29.04 E-value=37 Score=21.62 Aligned_cols=18 Identities=22% Similarity=0.259 Sum_probs=15.4
Q ss_pred CCcccCCCCChhHHHhhh
Q 029887 139 GPFIAGEKVTAVDLSLAP 156 (186)
Q Consensus 139 ~~yl~G~~~t~aDi~~~~ 156 (186)
|..+.|..+++.|+..+.
T Consensus 70 g~lvLG~~F~w~Dll~Y~ 87 (91)
T PF10990_consen 70 GRLVLGSTFDWWDLLAYA 87 (91)
T ss_pred hHhhcCCCCCHHHHHHHH
Confidence 457899999999999874
No 189
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=28.65 E-value=1.4e+02 Score=18.18 Aligned_cols=63 Identities=19% Similarity=0.208 Sum_probs=38.6
Q ss_pred CChhHHHHHHHHHhc----CCCceeEeccCCCCchhhhhhCCCCCccEEE--eCCeee------eeHHHHHHHHHH
Q 029887 19 DCPFSQRALLTLEEK----KVPYKRHLINISDKPQWFMEISPEGKVPVVK--FDDKWV------ADSDVIVRIIEE 82 (186)
Q Consensus 19 ~sp~~~~vr~~L~~~----gi~~~~~~~~~~~~~~~~~~~~p~~~vP~L~--~~g~~l------~eS~aI~~yL~~ 82 (186)
+|+.|+...-.+... +-++....++..+. +.+.+...-..+|.+. .+|..+ .....|..+|.+
T Consensus 28 ~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~-~~l~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~ 102 (103)
T PF00085_consen 28 WCPPCKAFKPILEKLAKEYKDNVKFAKVDCDEN-KELCKKYGVKSVPTIIFFKNGKEVKRYNGPRNAESLIEFIEK 102 (103)
T ss_dssp TSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTS-HHHHHHTTCSSSSEEEEEETTEEEEEEESSSSHHHHHHHHHH
T ss_pred CCCccccccceecccccccccccccchhhhhcc-chhhhccCCCCCCEEEEEECCcEEEEEECCCCHHHHHHHHHc
Confidence 899999988555322 11566666665533 4466666678899886 466322 244566666654
No 190
>TIGR03396 PC_PLC phospholipase C, phosphocholine-specific, Pseudomonas-type. Members of this protein family are bacterial, phosphatidylcholine-hydrolyzing phospholipase C enzymes, with a characteristic domain architecture as found in hemolytyic (PlcH) and nonhemolytic (PlcN) secreted enzymes of Pseudomonas aeruginosa. PlcH hydrolyzes phosphatidylcholine to diacylglycerol and phosphocholine, but unlike PlcN can also hydrolyze sphingomyelin to ceramide ((N-acylsphingosine)) and phosphocholine. Members of this family share the twin-arginine signal sequence for Sec-independent transport across the plasma membrane. PlcH is secreted as a heterodimer with a small chaperone, PlcR, encoded immediately downstream.
Probab=28.21 E-value=96 Score=27.67 Aligned_cols=50 Identities=16% Similarity=0.280 Sum_probs=33.2
Q ss_pred CCCccEEEeC-----C---eeeeeHHHHHHHHHHhCCCCCCCCChHHHhhccccchHH
Q 029887 57 EGKVPVVKFD-----D---KWVADSDVIVRIIEEKYPEPSLTNPPEFASLGSKIFPSF 106 (186)
Q Consensus 57 ~~~vP~L~~~-----g---~~l~eS~aI~~yL~~~~~~~~l~~~~~~~~~~~~~~~~~ 106 (186)
..+||+++.. | ..+++-..|+++|+++++.....-..-|.+++.++.+.|
T Consensus 389 G~RVP~iVISPwsrgG~V~s~~~DHtSvLrflE~~fgl~~~nis~wRra~~gDLtsaf 446 (690)
T TIGR03396 389 GPRVPMYVISPWSKGGWVNSQVFDHTSVLRFLEKRFGVREPNISPWRRAVCGDLTSAF 446 (690)
T ss_pred cceeeEEEECCCCCCCcccCccccHHHHHHHHHHHhCCCCcccChhhhcccccHHHhc
Confidence 3489999864 3 578899999999999998432111122555666665443
No 191
>TIGR01764 excise DNA binding domain, excisionase family. An excisionase, or Xis protein, is a small protein that binds and promotes excisive recombination; it is not enzymatically active. This model represents a number of putative excisionases and related proteins from temperate phage, plasmids, and transposons, as well as DNA binding domains of other proteins, such as a DNA modification methylase. This model identifies mostly small proteins and N-terminal regions of large proteins, but some proteins appear to have two copies. This domain appears similar, in both sequence and predicted secondary structure (PSIPRED) to the MerR family of transcriptional regulators (pfam00376).
Probab=27.83 E-value=99 Score=16.02 Aligned_cols=26 Identities=15% Similarity=0.365 Sum_probs=20.7
Q ss_pred CCCCccEEEeCCeeeeeHHHHHHHHH
Q 029887 56 PEGKVPVVKFDDKWVADSDVIVRIIE 81 (186)
Q Consensus 56 p~~~vP~L~~~g~~l~eS~aI~~yL~ 81 (186)
-.|.+|....++..+.....|..|+.
T Consensus 23 ~~g~i~~~~~g~~~~~~~~~l~~~~~ 48 (49)
T TIGR01764 23 HEGELPAYRVGRHYRIPREDVDEYLE 48 (49)
T ss_pred HcCCCCeEEeCCeEEEeHHHHHHHHh
Confidence 45788887777788888888888875
No 192
>cd00449 PLPDE_IV PyridoxaL 5'-Phosphate Dependent Enzymes class IV (PLPDE_IV). This D-amino acid superfamily, one of five classes of PLPDE, consists of branched-chain amino acid aminotransferases (BCAT), D-amino acid transferases (DAAT), and 4-amino-4-deoxychorismate lyases (ADCL). BCAT catalyzes the reversible transamination reaction between the L-branched-chain amino and alpha-keto acids. DAAT catalyzes the synthesis of D-glutamic acid and D-alanine, and ADCL converts 4-amino-4-deoxychorismate to p-aminobenzoate and pyruvate. Except for a few enzymes, i. e., Escherichia coli and Salmonella BCATs, which are homohexamers arranged as a double trimer, the class IV PLPDEs are homodimers. Homodimer formation is required for catalytic activity.
Probab=27.15 E-value=62 Score=24.36 Aligned_cols=54 Identities=15% Similarity=0.284 Sum_probs=36.2
Q ss_pred HHHhcCCCceeEeccCCC---CchhhhhhCCCCCccEEEeCCeee--eeHHHHHHHHHH
Q 029887 29 TLEEKKVPYKRHLINISD---KPQWFMEISPEGKVPVVKFDDKWV--ADSDVIVRIIEE 82 (186)
Q Consensus 29 ~L~~~gi~~~~~~~~~~~---~~~~~~~~~p~~~vP~L~~~g~~l--~eS~aI~~yL~~ 82 (186)
.++..|++++...+.+.+ .++-|.-.+..|.+|+-..++..+ .....|.+.|.+
T Consensus 196 ~~~~~g~~v~e~~i~~~dL~~adevfl~ns~~gv~pV~~i~~~~~~~~~~~~~~~~l~~ 254 (256)
T cd00449 196 LAKELGIKVEERPISLDELYAADEVFLTGTAAEVTPVTEIDGRGIGDGKPGPVTRKLRE 254 (256)
T ss_pred HHHHcCCeEEEEecCHHHHhhCCEEEEccccceEEEEEEECCeecCCCCCCHHHHHHHH
Confidence 457789999888887654 344455444568899998887665 344566666644
No 193
>cd01557 BCAT_beta_family BCAT_beta_family: Branched-chain aminotransferase catalyses the transamination of the branched-chain amino acids leusine, isoleucine and valine to their respective alpha-keto acids, alpha-ketoisocaproate, alpha-keto-beta-methylvalerate and alpha-ketoisovalerate. The enzyme requires pyridoxal 5'-phosphate (PLP) as a cofactor to catalyze the reaction. It has been found that mammals have two foms of the enzyme - mitochondrial and cytosolic forms while bacteria contain only one form of the enzyme. The mitochondrial form plays a significant role in skeletal muscle glutamine and alanine synthesis and in interorgan nitrogen metabolism.Members of this subgroup are widely distributed in all three forms of life.
Probab=26.38 E-value=43 Score=25.88 Aligned_cols=56 Identities=9% Similarity=0.087 Sum_probs=37.5
Q ss_pred HHHhcCCCceeEeccCCC---CchhhhhhCCCCCccEEEeCCeee----eeHHHHHHHHHHhC
Q 029887 29 TLEEKKVPYKRHLINISD---KPQWFMEISPEGKVPVVKFDDKWV----ADSDVIVRIIEEKY 84 (186)
Q Consensus 29 ~L~~~gi~~~~~~~~~~~---~~~~~~~~~p~~~vP~L~~~g~~l----~eS~aI~~yL~~~~ 84 (186)
+++..|++++...+.+.+ .++-|.-.+..+-+|+-..++..+ .....|.+.|.+.+
T Consensus 211 ~~~~~Gi~v~e~~i~~~~l~~ade~f~~ns~~gi~pV~~i~~~~~~~~~~~~gp~~~~l~~~~ 273 (279)
T cd01557 211 LARDLGIKVEERPITRDELYEADEVFATGTAAVVTPVGEIDYRGKEPGEGEVGPVTKKLYDLL 273 (279)
T ss_pred HHHHcCCeEEEEeCCHHHHhhCCEEEEecceeEEEEEEEEccccccCCCCCCCHHHHHHHHHH
Confidence 567889999998887654 444455445568889998877665 34456666555433
No 194
>cd08200 catalase_peroxidase_2 C-terminal non-catalytic domain of catalase-peroxidases. This is a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Catalase-peroxidases can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. These enzymes are found in many archaeal and bacterial organisms where they neutralize potentially lethal hydrogen peroxide molecules generated during photosynthesis or stationary phase. Along with related intracellular fungal and plant peroxidases, catalase-peroxidases belong to plant peroxidase superfamily. Unlike the eukaryotic enzymes, they are typically comprised of two homologous domains that probably arose via a single gene duplication event. The heme binding motif is present only in the N-terminal domain; the function of the C-terminal do
Probab=25.53 E-value=2.3e+02 Score=22.48 Aligned_cols=43 Identities=23% Similarity=0.206 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHhhCCCCcccCCCCChhHHHhhhHHHHHHHH
Q 029887 122 ALLEELKALDEHLKTHGGPFIAGEKVTAVDLSLAPKLYHLQVA 164 (186)
Q Consensus 122 ~~~~~l~~le~~L~~~~~~yl~G~~~t~aDi~~~~~l~~~~~~ 164 (186)
.+.+.+..||..-.+-+..--.|.++|+||+.+.+-...++.+
T Consensus 73 ~L~~~~~~Le~ik~~~~~~~~~~~~vS~ADLivLaG~vAiE~a 115 (297)
T cd08200 73 ELAKVLAVLEGIQKEFNESQSGGKKVSLADLIVLGGCAAVEKA 115 (297)
T ss_pred HHHHHHHHHHHHHHHhcccccCCccccHHHHHHHHhHHHHHHH
Confidence 4677777777764432111123457999999988776766654
No 195
>PHA03158 hypothetical protein; Provisional
Probab=24.65 E-value=2.9e+02 Score=20.37 Aligned_cols=66 Identities=18% Similarity=0.194 Sum_probs=40.5
Q ss_pred CC-eeeeeHHHHHHHHHHhCCCCCCCCChHHHhhccccchHHHHhhcCCCCCchHHHHHHHHHHHHHHHHh
Q 029887 66 DD-KWVADSDVIVRIIEEKYPEPSLTNPPEFASLGSKIFPSFVNFLKSKDPNDGTEQALLEELKALDEHLK 135 (186)
Q Consensus 66 ~g-~~l~eS~aI~~yL~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~ 135 (186)
+| .++++|..-.+.|.+.-+.-......+++.+...+...-..-. ...+...++++.++.+|+-+.
T Consensus 205 nG~~V~y~sLpf~ERl~Rs~pPWCv~t~~EK~~~~kQllka~kkc~----~~s~~~~~leeei~eleks~a 271 (273)
T PHA03158 205 NGKHVRFDDLPFMERIKRSGPPWCIKTAKEKAAILKQLLKAAKKCC----KNSEHEKELEEEIEELEKSLA 271 (273)
T ss_pred cCEEEEeccCcHHHHHhccCCCcEeecHHHhHHHHHHHHHHHHHHh----cchHHHHHHHHHHHHHHHhhc
Confidence 45 6889999999998886665444555666665554433222211 123445667777777777654
No 196
>PRK06606 branched-chain amino acid aminotransferase; Validated
Probab=24.36 E-value=68 Score=25.16 Aligned_cols=54 Identities=9% Similarity=0.169 Sum_probs=36.0
Q ss_pred HHHhcCCCceeEeccCCC---CchhhhhhCCCCCccEEEeCCeeee--eHHHHHHHHHH
Q 029887 29 TLEEKKVPYKRHLINISD---KPQWFMEISPEGKVPVVKFDDKWVA--DSDVIVRIIEE 82 (186)
Q Consensus 29 ~L~~~gi~~~~~~~~~~~---~~~~~~~~~p~~~vP~L~~~g~~l~--eS~aI~~yL~~ 82 (186)
++...|++++...+.+.+ .++-|.-.+..|.+|+-..++..+. .+..|.+-|.+
T Consensus 228 ~~~~~g~~v~e~~i~~~eL~~AdevfltnS~~gi~PV~~id~~~~~~g~~g~~~~~L~~ 286 (306)
T PRK06606 228 LAKDLGIEVIERRITRDELYIADEVFFTGTAAEVTPIREVDGRQIGNGKRGPITEKLQS 286 (306)
T ss_pred HHHHcCCcEEEEeCCHHHHhhCCEEEEcCCcceEEEEEEECcEECCCCCCCHHHHHHHH
Confidence 567889999998887654 4454555555788999998886664 33444444443
No 197
>PRK06092 4-amino-4-deoxychorismate lyase; Reviewed
Probab=24.23 E-value=1e+02 Score=23.56 Aligned_cols=55 Identities=15% Similarity=0.128 Sum_probs=36.7
Q ss_pred HHHhcCCCceeEeccCCC---CchhhhhhCCCCCccEEEeCCeeeeeHHHHHHHHHHhC
Q 029887 29 TLEEKKVPYKRHLINISD---KPQWFMEISPEGKVPVVKFDDKWVADSDVIVRIIEEKY 84 (186)
Q Consensus 29 ~L~~~gi~~~~~~~~~~~---~~~~~~~~~p~~~vP~L~~~g~~l~eS~aI~~yL~~~~ 84 (186)
.++..|++++...+.+.+ .++.|.-.+-.+.+||-..++..+. +..+.+.|.+.+
T Consensus 208 ~~~~~g~~v~e~~i~~~dL~~adevfltns~~gi~pV~~id~~~~~-~g~~~~~l~~~~ 265 (268)
T PRK06092 208 LLAQSGYPVVEVDASLEELLQADEVFICNSLMPVWPVRAIGETSYS-SGTLTRYLQPLC 265 (268)
T ss_pred HHHHcCCeEEEEECCHHHHhhCCEEEEeCCcceEEEEEEECCEEcc-chHHHHHHHHHH
Confidence 456789999998888654 3444554445688999998886653 356666665443
No 198
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=23.54 E-value=77 Score=23.10 Aligned_cols=20 Identities=40% Similarity=0.587 Sum_probs=18.1
Q ss_pred CCeeeeeHHHHHHHHHHhCC
Q 029887 66 DDKWVADSDVIVRIIEEKYP 85 (186)
Q Consensus 66 ~g~~l~eS~aI~~yL~~~~~ 85 (186)
.+..|++|..|-.|+.++|+
T Consensus 154 ad~lIaDs~~I~~y~~~~y~ 173 (185)
T PF09314_consen 154 ADRLIADSKGIQDYIKERYG 173 (185)
T ss_pred CCEEEEcCHHHHHHHHHHcC
Confidence 35689999999999999998
No 199
>PF15608 PELOTA_1: PELOTA RNA binding domain
Probab=23.38 E-value=98 Score=20.14 Aligned_cols=22 Identities=41% Similarity=0.356 Sum_probs=19.9
Q ss_pred CChhHHHHHHHHHhcCCCceeE
Q 029887 19 DCPFSQRALLTLEEKKVPYKRH 40 (186)
Q Consensus 19 ~sp~~~~vr~~L~~~gi~~~~~ 40 (186)
.+|....++.+.+++||+++..
T Consensus 65 ~~pd~~Hl~~LA~ekgVpVe~~ 86 (100)
T PF15608_consen 65 DDPDLAHLLLLAEEKGVPVEVY 86 (100)
T ss_pred CCccHHHHHHHHHHcCCcEEEe
Confidence 5688999999999999999886
No 200
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=22.92 E-value=2.2e+02 Score=18.43 Aligned_cols=53 Identities=17% Similarity=-0.004 Sum_probs=32.8
Q ss_pred CCChhHHHHHHHHHhcCC---CceeEeccCCCCchhhhhhCCCCCccEEE--eCCeeee
Q 029887 18 GDCPFSQRALLTLEEKKV---PYKRHLINISDKPQWFMEISPEGKVPVVK--FDDKWVA 71 (186)
Q Consensus 18 ~~sp~~~~vr~~L~~~gi---~~~~~~~~~~~~~~~~~~~~p~~~vP~L~--~~g~~l~ 71 (186)
.+|+.|+.+.-.|++.-- ......++... .+++.+...-..+|+++ .+|..+.
T Consensus 32 ~~c~~C~~~~p~l~~la~~~~~i~f~~Vd~~~-~~~l~~~~~v~~vPt~l~fk~G~~v~ 89 (113)
T cd02989 32 PEFFRCKIMDKHLEILAKKHLETKFIKVNAEK-APFLVEKLNIKVLPTVILFKNGKTVD 89 (113)
T ss_pred CCCccHHHHHHHHHHHHHHcCCCEEEEEEccc-CHHHHHHCCCccCCEEEEEECCEEEE
Confidence 378888888776644211 23556666443 33456666777899887 4776554
No 201
>PRK13356 aminotransferase; Provisional
Probab=22.84 E-value=77 Score=24.54 Aligned_cols=53 Identities=25% Similarity=0.310 Sum_probs=36.1
Q ss_pred HHHhcCCCceeEeccCCC---CchhhhhhCCCCCccEEEeCCeeeeeHHHHHHHHHH
Q 029887 29 TLEEKKVPYKRHLINISD---KPQWFMEISPEGKVPVVKFDDKWVADSDVIVRIIEE 82 (186)
Q Consensus 29 ~L~~~gi~~~~~~~~~~~---~~~~~~~~~p~~~vP~L~~~g~~l~eS~aI~~yL~~ 82 (186)
+++..|++++...+.+.+ .++-|...+..+-+|+-..+|..+. ...|.+.|.+
T Consensus 221 ~a~~~gi~v~e~~i~~~eL~~adevfltns~~gi~PV~~id~~~~~-~g~~~~~l~~ 276 (286)
T PRK13356 221 LLREDGVTVVETTLTYEDFLEADEVFSTGNYSKVVPVTRFDDRSLQ-PGPVTRRARE 276 (286)
T ss_pred HHHHcCCeEEEEecCHHHHHhcCceEEecChheEEEEEEECCEEec-CChHHHHHHH
Confidence 567889999998888654 4555655455678899998886653 2455555544
No 202
>PF07056 DUF1335: Protein of unknown function (DUF1335); InterPro: IPR009766 This family represents a conserved region approximately 130 residues long within a number of proteins of unknown function that seem to be specific to the white spot syndrome virus (WSSV).
Probab=22.71 E-value=1.4e+02 Score=20.25 Aligned_cols=31 Identities=29% Similarity=0.628 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHhhCCCCcccCCCCChhHHHh
Q 029887 121 QALLEELKALDEHLKTHGGPFIAGEKVTAVDLSL 154 (186)
Q Consensus 121 ~~~~~~l~~le~~L~~~~~~yl~G~~~t~aDi~~ 154 (186)
..+.+.|..+|+.+.+++|.+ ...+.+||+.
T Consensus 43 ~~v~~~L~~me~~l~~~g~~~---~~v~v~dICh 73 (131)
T PF07056_consen 43 RNVTKKLKSMEQNLVKHGGKY---SMVPVVDICH 73 (131)
T ss_pred HHHHHHHHHHHHHHHHccCCc---ceeeHHHHHH
Confidence 567788999999998886554 4577888764
No 203
>cd04911 ACT_AKiii-YclM-BS_1 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Bacillus subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from Bacillus subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=21.05 E-value=1.1e+02 Score=18.71 Aligned_cols=24 Identities=21% Similarity=0.425 Sum_probs=20.3
Q ss_pred CChhHHHHHHHHHhcCCCceeEec
Q 029887 19 DCPFSQRALLTLEEKKVPYKRHLI 42 (186)
Q Consensus 19 ~sp~~~~vr~~L~~~gi~~~~~~~ 42 (186)
--.|++|+.=+|+..|++||-.+-
T Consensus 14 evGF~rk~L~I~E~~~is~Eh~PS 37 (76)
T cd04911 14 EVGFGRKLLSILEDNGISYEHMPS 37 (76)
T ss_pred hhcHHHHHHHHHHHcCCCEeeecC
Confidence 456899999999999999988743
No 204
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=21.03 E-value=90 Score=22.98 Aligned_cols=49 Identities=16% Similarity=0.230 Sum_probs=30.5
Q ss_pred CCCChhHHHHHHHHHhcCC---CceeEeccCCCCchhhhhhCCCCCccEEEeC
Q 029887 17 LGDCPFSQRALLTLEEKKV---PYKRHLINISDKPQWFMEISPEGKVPVVKFD 66 (186)
Q Consensus 17 ~~~sp~~~~vr~~L~~~gi---~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~ 66 (186)
..+||+|..+..+++..-- .+....++... .++..+...-..+|+++.+
T Consensus 142 a~~C~~C~~~~~~l~~l~~~~~~i~~~~vD~~~-~~~~~~~~~V~~vPtl~i~ 193 (215)
T TIGR02187 142 TPTCPYCPYAVLMAHKFALANDKILGEMIEANE-NPDLAEKYGVMSVPKIVIN 193 (215)
T ss_pred CCCCCCcHHHHHHHHHHHHhcCceEEEEEeCCC-CHHHHHHhCCccCCEEEEe
Confidence 3589999988887765432 23333455433 3445555666789999753
No 205
>TIGR01122 ilvE_I branched-chain amino acid aminotransferase, group I. Among the class IV aminotransferases are two phylogenetically separable groups of branched-chain amino acid aminotransferase (IlvE). The last common ancestor of the two lineages appears also to have given rise to a family of D-amino acid aminotransferases (DAAT). This model represents the IlvE family more strongly similar to the DAAT family.
Probab=20.47 E-value=95 Score=24.19 Aligned_cols=54 Identities=11% Similarity=0.191 Sum_probs=35.8
Q ss_pred HHHhcCCCceeEeccCCC---CchhhhhhCCCCCccEEEeCCeeee--eHHHHHHHHHH
Q 029887 29 TLEEKKVPYKRHLINISD---KPQWFMEISPEGKVPVVKFDDKWVA--DSDVIVRIIEE 82 (186)
Q Consensus 29 ~L~~~gi~~~~~~~~~~~---~~~~~~~~~p~~~vP~L~~~g~~l~--eS~aI~~yL~~ 82 (186)
++...|++++...+.+.+ .++-|...+..+.+|+-..++..+. ....|.+-|.+
T Consensus 220 la~~~g~~v~e~~i~~~eL~~adevfltns~~gv~PV~~id~~~~~~~~~g~~~~~l~~ 278 (298)
T TIGR01122 220 LAKELGIEVVEQPISREELYTADEAFFTGTAAEITPIREVDGRKIGNGRRGPVTKKLQE 278 (298)
T ss_pred HHHHcCCcEEEEeCCHHHHhhCCEEEEcCCcceEEEEEEECCEECCCCCCChHHHHHHH
Confidence 467889999998888754 4444555555788999988876653 22344444433
No 206
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=20.42 E-value=3.1e+02 Score=21.81 Aligned_cols=54 Identities=13% Similarity=0.114 Sum_probs=29.6
Q ss_pred CChhHHHHHHHHHhcCCCceeEeccCCCCchhhhhhCCCCCccEEEeCCeeeeeH
Q 029887 19 DCPFSQRALLTLEEKKVPYKRHLINISDKPQWFMEISPEGKVPVVKFDDKWVADS 73 (186)
Q Consensus 19 ~sp~~~~vr~~L~~~gi~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~g~~l~eS 73 (186)
.++.+..+.-.|+++|+++-...=.....-..+.+.-.. ..|++..+|..+...
T Consensus 19 ~~~~a~~aL~~Lk~~GI~vVlaTGRt~~ev~~l~~~Lgl-~~p~I~eNGA~I~~p 72 (302)
T PRK12702 19 SYGAARQALAALERRSIPLVLYSLRTRAQLEHLCRQLRL-EHPFICEDGSAIYVP 72 (302)
T ss_pred CCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCC-CCeEEEeCCcEEEEc
Confidence 455677788888999998855422211111123332222 238888887555443
No 207
>PRK07650 4-amino-4-deoxychorismate lyase; Provisional
Probab=20.04 E-value=1.1e+02 Score=23.62 Aligned_cols=54 Identities=15% Similarity=0.287 Sum_probs=35.7
Q ss_pred HHHhcCCCceeEeccCCC---CchhhhhhCCCCCccEEEeCCeeee-eHHHHHHHHHH
Q 029887 29 TLEEKKVPYKRHLINISD---KPQWFMEISPEGKVPVVKFDDKWVA-DSDVIVRIIEE 82 (186)
Q Consensus 29 ~L~~~gi~~~~~~~~~~~---~~~~~~~~~p~~~vP~L~~~g~~l~-eS~aI~~yL~~ 82 (186)
.++..|++++...+.+.+ .++-|.-.+..|.+|+...++..+. ....|...|.+
T Consensus 212 ~~~~~g~~v~e~~i~~~dL~~adeifl~ns~~gv~pV~~i~~~~~~g~~g~~~~~l~~ 269 (283)
T PRK07650 212 VLEELGIEVKEGFYTKEELLSADEVFVTNSIQEIVPLTRIEERDFPGKVGMVTKRLQN 269 (283)
T ss_pred HHHHcCCeEEEEecCHHHHhhCCEeeeecCcccEEEEEEECCEEeCCCCCHHHHHHHH
Confidence 567889999988887654 3454555455688999998886653 22345444443
Done!