BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029888
(186 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8GYH7|NSE2_ARATH E3 SUMO-protein ligase MMS21 OS=Arabidopsis thaliana GN=MMS21 PE=1
SV=1
Length = 249
Score = 231 bits (590), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 114/185 (61%), Positives = 143/185 (77%), Gaps = 3/185 (1%)
Query: 1 MEAFGDCTHHSAAIQSVGNTYQPGTELTDFKKLLVDEDAKSRAASSSVPPNDPL-HKFRE 59
++ DC H S AIQSV N YQP +LTDFKKLL DE K +A SSVP ND L +FRE
Sbjct: 66 LDLHSDCNHRSTAIQSVANRYQPVEQLTDFKKLLDDEFTKLKATPSSVPQNDHLMRQFRE 125
Query: 60 AVWNVHHAGELMPGEEQEDIVMTSTQSNILNISCPLSGKPITELAEPVRSVECKHIYEKN 119
AVWNVHHAGE MPG++ EDIVMTSTQ +LN++CPLSGKP+TELA+PVRS++C+H+YEK+
Sbjct: 126 AVWNVHHAGEPMPGDDDEDIVMTSTQCPLLNMTCPLSGKPVTELADPVRSMDCRHVYEKS 185
Query: 120 AIQAYIKSKNANARCPVAGCPRKLQVSKVVCDSLLLVDIDEMRRTSKETARTDMIEDFTA 179
I YI + N NA CPVAGC KLQ SKV+CD++L +I+EMR +K++ R ++IEDFT
Sbjct: 186 VILHYIVN-NPNANCPVAGCRGKLQNSKVICDAMLKFEIEEMRSLNKQSNRAEVIEDFTE 244
Query: 180 -VDEE 183
VDE+
Sbjct: 245 DVDED 249
>sp|Q4PIR3|NSE2_SCHPO E3 SUMO-protein ligase nse2 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=nse2 PE=1 SV=3
Length = 250
Score = 50.8 bits (120), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 54/111 (48%), Gaps = 20/111 (18%)
Query: 56 KFREAVWNVHHAG-----------ELMPGEEQE-DIVMTSTQSNILNISCPLSGKPITEL 103
+F++ +W+ + +M EEQE D VM + + + CPL+ +PI
Sbjct: 132 EFKKTIWHEQNTDGSDFPSMKTFFNVMNTEEQEADEVMVYSAT--FDNRCPLTLQPI--- 186
Query: 104 AEPVRSVECKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQVSKVVCDSLL 154
P+ S C H YEK+AI + + N CPV GC +LQ S + D +L
Sbjct: 187 VHPILSTACNHFYEKDAILSLL---NPTCVCPVVGCEARLQRSLLKEDEIL 234
>sp|Q91VT1|NSE2_MOUSE E3 SUMO-protein ligase NSE2 OS=Mus musculus GN=Nsmce2 PE=2 SV=1
Length = 247
Score = 50.1 bits (118), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 81/168 (48%), Gaps = 29/168 (17%)
Query: 6 DCTHHSAAIQSVGNTYQ-------PGTELTDFKKLLVDEDAKSRAASSSVPPNDPLHKFR 58
+ +H+ A+QS N + P +L KK L +D S A N+ +F+
Sbjct: 74 ELSHYVKAVQSTINHVKEERPEKVPDLKLLVEKKFLALQDKNSDA---DFKENEKFVQFK 130
Query: 59 EAV------WNVH--HAGELMPGEEQEDIVMTSTQSNILNISCPLSGKPITELAEPVRSV 110
+ + + +H +L G + ED+++T +Q+N + CP++ E+ +PV++
Sbjct: 131 QQLRELKKQYGIHADRENDLTEGVD-EDMIVTQSQTNFI---CPITQ---LEMKKPVKNK 183
Query: 111 ECKHIYEKNAIQAYIKSKNANAR---CPVAGCPRK-LQVSKVVCDSLL 154
C H YE+ AI I+SK+ + CP GC +++S ++ D L
Sbjct: 184 MCGHTYEEEAIVRMIESKHKRKKKACCPKIGCSHTDMRMSDLIPDEAL 231
>sp|Q4V8A0|NSE2_RAT E3 SUMO-protein ligase NSE2 OS=Rattus norvegicus GN=Nsmce2 PE=2
SV=1
Length = 247
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 82/179 (45%), Gaps = 27/179 (15%)
Query: 6 DCTHHSAAIQSVGNTYQ-------PGTELTDFKKLLVDEDAKSRAASSSVPPNDPLHKFR 58
+ H+ A+QS N + P +L KK L +D S A N+ +F+
Sbjct: 74 ELNHYVKAVQSTINHVKEERPEKVPDLKLLVEKKFLALQDKNSDA---DFKENEKFVQFK 130
Query: 59 EAVWNVH-----HAGELMPGEE--QEDIVMTSTQSNILNISCPLSGKPITELAEPVRSVE 111
+ + + HA G E ED+++T +Q+N + CP++ E+ +PV++
Sbjct: 131 QQLRELKKQYGIHADRENDGIEGMDEDMIVTQSQTNFI---CPITQ---LEMKKPVKNKM 184
Query: 112 CKHIYEKNAIQAYIKSKNANAR---CPVAGCPRK-LQVSKVVCDSLLLVDIDEMRRTSK 166
C H YE+ AI I+SK+ + CP GC +++S ++ D L I+ + K
Sbjct: 185 CGHTYEEEAIVRMIESKHKRKKKACCPKIGCSHTDMRMSDLIPDEALRRAIESHNKKKK 243
>sp|Q7ZXH2|NSE2_XENLA E3 SUMO-protein ligase NSE2 OS=Xenopus laevis GN=nsmce2 PE=2 SV=1
Length = 238
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 59/122 (48%), Gaps = 16/122 (13%)
Query: 48 VPPNDPLHKFREAVWNVH-HAGELMPGEE-----QEDIVMTSTQSNILNISCPLSGKPIT 101
+ ND +F++ + + GE G+ EDI + +Q N+ +CP++
Sbjct: 114 LKKNDRFVQFKDQLREMRKQMGEKEEGDAAFENVDEDIAVLPSQQNL---TCPITQ---M 167
Query: 102 ELAEPVRSVECKHIYEKNAIQAYIK---SKNANARCPVAGCPRK-LQVSKVVCDSLLLVD 157
E+ PV++ C H YEK AI+ I+ K +CP GC +Q+S +V D+ L
Sbjct: 168 EMTNPVKNKVCGHTYEKEAIERMIQDRHQKKKRVKCPKVGCVHSDMQISDLVPDTALKRT 227
Query: 158 ID 159
ID
Sbjct: 228 ID 229
>sp|Q96MF7|NSE2_HUMAN E3 SUMO-protein ligase NSE2 OS=Homo sapiens GN=NSMCE2 PE=1 SV=2
Length = 247
Score = 47.4 bits (111), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 69/148 (46%), Gaps = 26/148 (17%)
Query: 9 HHSAAIQSVGNTYQ-------PGTELTDFKKLLVDEDAKSRAASSSVPPNDPLHKFREAV 61
H+ A+QS N + P +L KK L +S+ + + N+ +F++ +
Sbjct: 77 HYVKAVQSTINHVKEERPEKIPDLKLLVEKKFLA---LQSKNSDADFQNNEKFVQFKQQL 133
Query: 62 WNVHHAGELMPGEE-------QEDIVMTSTQSNILNISCPLSGKPITELAEPVRSVECKH 114
+ L E EDI++T +Q+N +CP++ + E+ +PV++ C H
Sbjct: 134 KELKKQCGLQADREADGTEGVDEDIIVTQSQTNF---TCPITKE---EMKKPVKNKVCGH 187
Query: 115 IYEKNAIQAYIKSKN---ANARCPVAGC 139
YE++AI I+S+ A CP GC
Sbjct: 188 TYEEDAIVRMIESRQKRKKKAYCPQIGC 215
>sp|Q32KY9|NSE2_BOVIN E3 SUMO-protein ligase NSE2 OS=Bos taurus GN=NSMCE2 PE=2 SV=1
Length = 248
Score = 47.0 bits (110), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 83/181 (45%), Gaps = 27/181 (14%)
Query: 6 DCTHHSAAIQSVGNTYQ-------PGTELTDFKKLLVDEDAKSRAASSSVPPNDPLHKFR 58
+ H+ A+QS N + P +L KK L ++ S A N+ +F+
Sbjct: 76 ELNHYLKAVQSTINHVKEERSEKIPDLKLLVEKKFLALQNKNSDA---DFQNNEKFVQFK 132
Query: 59 EAVWNVHHAGELMPGEE-------QEDIVMTSTQSNILNISCPLSGKPITELAEPVRSVE 111
+ + + L E ED+++T +Q+N + CP++ E+ +PV++
Sbjct: 133 QQLKELKKQYGLQSDREADITEGVDEDMIVTQSQTNFI---CPITQ---LEMKKPVKNKV 186
Query: 112 CKHIYEKNAIQAYIKSKNANAR---CPVAGCPR-KLQVSKVVCDSLLLVDIDEMRRTSKE 167
C H YE+ AI I+SK+ + CP GC +++S ++ D L I+ ++ ++
Sbjct: 187 CGHTYEEEAIVRMIESKHERKKKACCPKIGCSHVDMRMSDLIQDEALRRAIESHKKRRRQ 246
Query: 168 T 168
+
Sbjct: 247 S 247
>sp|O94451|PLI1_SCHPO E3 SUMO-protein ligase pli1 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=pli1 PE=1 SV=3
Length = 727
Score = 39.3 bits (90), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 43/79 (54%), Gaps = 11/79 (13%)
Query: 78 DIVMTSTQSNILNISCPLSGKPITELAEPVRSVECKHI--YEKNAIQAYIKSKNANARCP 135
DI+ TST +++ CPLS + ++ PVRSV CKHI ++ +A + + + CP
Sbjct: 293 DIIATSTD---ISLKCPLS---FSRISLPVRSVFCKHIQCFDASAFLE-MNKQTPSWMCP 345
Query: 136 VAGCPRKLQVSKVVCDSLL 154
V C +Q S ++ D +
Sbjct: 346 V--CASHIQFSDLIIDGFM 362
>sp|Q9C5A4|ARI16_ARATH Probable E3 ubiquitin-protein ligase ARI16 OS=Arabidopsis thaliana
GN=ARI16 PE=2 SV=1
Length = 500
Score = 35.4 bits (80), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/92 (22%), Positives = 44/92 (47%), Gaps = 10/92 (10%)
Query: 55 HKFREAVWNVHHAGELMPGEEQEDIVMTSTQSNILNISCPLSGKPITELAEPVRSVECKH 114
HKF W+ + + L +EQ ++ +Q + ++ I +L EPV K
Sbjct: 98 HKFSTTCWSEYLSDALKKNKEQRGLISCLSQDCVASV----GPDTIEQLTEPV-----KE 148
Query: 115 IYEKNAIQAYIKSKNANAR-CPVAGCPRKLQV 145
+YE ++++++ A + CP +GC +++
Sbjct: 149 MYENYILESFMECHKATIKWCPASGCEYAVEL 180
>sp|Q9ZU51|RHA2B_ARATH Probable E3 ubiquitin-protein ligase RHA2B OS=Arabidopsis thaliana
GN=RHA2B PE=1 SV=2
Length = 147
Score = 32.7 bits (73), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Query: 104 AEPVRSVECKHIYEKNAIQAYIKSKNANARCPVAGCP 140
E VR ++C+H++ K ++ +++ N N CP+ P
Sbjct: 84 GEEVRKLDCRHVFHKQCLEGWLQHLNFN--CPLCRSP 118
>sp|Q94BR4|PR19A_ARATH Pre-mRNA-processing factor 19 homolog 1 OS=Arabidopsis thaliana
GN=PRP19A PE=1 SV=1
Length = 523
Score = 32.0 bits (71), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 6/53 (11%)
Query: 91 ISCPLSGKPITELAEPVRSVECKHIYEKNAIQAYIKSKNANARCPVAGCPRKL 143
++C +SG+ + E EPV S + +YEK IQ +I +CPV G P L
Sbjct: 1 MNCAISGE-VPE--EPVVSKKSGLLYEKRLIQTHISDY---GKCPVTGEPHTL 47
>sp|Q6ZPS6|AKIB1_MOUSE Ankyrin repeat and IBR domain-containing protein 1 OS=Mus musculus
GN=Ankib1 PE=1 SV=2
Length = 1085
Score = 32.0 bits (71), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 5/62 (8%)
Query: 90 NISCP----LSGKPITELAEPVRSVECKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQV 145
NI CP P+ ++ E V S E Y + I+A++++ A CP AGC R +++
Sbjct: 376 NIFCPAYECFQLVPV-DVIESVVSKEMDKRYLQFDIKAFVENNPAIKWCPTAGCERAVRL 434
Query: 146 SK 147
+K
Sbjct: 435 TK 436
>sp|Q04195|SIZ1_YEAST E3 SUMO-protein ligase SIZ1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=SIZ1 PE=1 SV=1
Length = 904
Score = 31.6 bits (70), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 27/41 (65%), Gaps = 4/41 (9%)
Query: 75 EQEDIVMTSTQSNILNISCPLSGKPITELAEPVRSVECKHI 115
E E++ +T+T S I+++ CP+S T + P +S+ CKH+
Sbjct: 344 EDEEMGLTTT-STIMSLQCPIS---YTRMKYPSKSINCKHL 380
>sp|P87176|SLX8_SCHPO E3 ubiquitin-protein ligase complex slx8-rfp subunit slx8
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=slx8 PE=1 SV=1
Length = 269
Score = 31.2 bits (69), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 112 CKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQVSKVVCDSLLL 155
C HI+ I + + + A +CPV C RK+ +KV+C ++L
Sbjct: 221 CGHIFCNFCILSALGTTAATQKCPV--CRRKVHPNKVICLEMML 262
>sp|Q6AY01|RN133_RAT E3 ubiquitin-protein ligase RNF133 OS=Rattus norvegicus GN=Rnf133
PE=2 SV=1
Length = 381
Score = 30.8 bits (68), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Query: 105 EPVRSVECKHIYEKNAIQAYIKSKNANARCPVAGC 139
E VR + CKH + KN I +I A+ CP+ C
Sbjct: 267 EIVRILTCKHFFHKNCIDPWIL---AHGTCPMCKC 298
>sp|Q95K04|RN133_MACFA E3 ubiquitin-protein ligase RNF133 OS=Macaca fascicularis GN=RNF133
PE=2 SV=1
Length = 376
Score = 30.8 bits (68), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
Query: 107 VRSVECKHIYEKNAIQAYIKSKNANARCPVAGC 139
VR + CKH + KN I +I S + CP+ C
Sbjct: 269 VRILTCKHFFHKNCIDPWILS---HGTCPICKC 298
>sp|Q14B02|RN133_MOUSE E3 ubiquitin-protein ligase RNF133 OS=Mus musculus GN=Rnf133 PE=1
SV=1
Length = 382
Score = 30.8 bits (68), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Query: 105 EPVRSVECKHIYEKNAIQAYIKSKNANARCPVAGC 139
E VR + CKH + KN I +I A+ CP+ C
Sbjct: 267 EIVRILTCKHFFHKNCIDPWIL---AHGTCPMCKC 298
>sp|O80742|PUB19_ARATH U-box domain-containing protein 19 OS=Arabidopsis thaliana GN=PUB19
PE=2 SV=1
Length = 686
Score = 30.4 bits (67), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 9/74 (12%)
Query: 80 VMTSTQSNILNISCPLSGKPITELAEPVRSVECKHIYEKNAIQAYIKSKNANARCPVAGC 139
+M N+ ++ CP+S + +++PV +E H Y++++I + S N CP G
Sbjct: 271 LMMVRSLNVDDLRCPIS---LEIMSDPV-VLESGHTYDRSSITKWFAS--GNITCPKTG- 323
Query: 140 PRKLQVSKVVCDSL 153
K VS V+ D+
Sbjct: 324 --KTLVSTVLVDNF 335
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.128 0.371
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,254,984
Number of Sequences: 539616
Number of extensions: 2483889
Number of successful extensions: 5008
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 5001
Number of HSP's gapped (non-prelim): 23
length of query: 186
length of database: 191,569,459
effective HSP length: 111
effective length of query: 75
effective length of database: 131,672,083
effective search space: 9875406225
effective search space used: 9875406225
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 57 (26.6 bits)