Query 029888
Match_columns 186
No_of_seqs 202 out of 1139
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 07:59:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029888.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029888hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3htk_C E3 SUMO-protein ligase 99.9 1.2E-28 4.1E-33 208.6 7.1 151 4-164 77-251 (267)
2 2yu4_A E3 SUMO-protein ligase 99.8 2.2E-19 7.5E-24 129.9 7.1 77 86-165 3-83 (94)
3 2kr4_A Ubiquitin conjugation f 99.7 6.5E-18 2.2E-22 120.1 4.3 68 90-166 14-81 (85)
4 2kre_A Ubiquitin conjugation f 99.6 1.7E-16 5.9E-21 116.3 5.7 69 90-167 29-97 (100)
5 1wgm_A Ubiquitin conjugation f 99.6 4E-16 1.4E-20 113.9 7.4 70 90-168 22-92 (98)
6 1t1h_A Gspef-atpub14, armadill 99.6 4.2E-16 1.4E-20 107.8 4.7 68 90-165 8-75 (78)
7 2f42_A STIP1 homology and U-bo 99.5 7E-15 2.4E-19 118.3 5.6 68 90-165 106-173 (179)
8 3ztg_A E3 ubiquitin-protein li 99.5 1.1E-14 3.8E-19 103.5 6.0 68 90-164 13-82 (92)
9 2c2l_A CHIP, carboxy terminus 99.5 7E-15 2.4E-19 122.2 4.9 69 89-165 207-275 (281)
10 3fl2_A E3 ubiquitin-protein li 99.4 2.4E-13 8.1E-18 101.9 6.6 67 90-164 52-119 (124)
11 2y43_A E3 ubiquitin-protein li 99.4 1.9E-13 6.5E-18 98.5 4.9 70 90-167 22-91 (99)
12 1z6u_A NP95-like ring finger p 99.4 5.6E-13 1.9E-17 103.8 6.6 67 90-164 78-145 (150)
13 3lrq_A E3 ubiquitin-protein li 99.4 5E-13 1.7E-17 97.0 5.1 71 89-166 21-91 (100)
14 1jm7_A BRCA1, breast cancer ty 99.4 4E-13 1.4E-17 98.3 4.3 69 90-164 21-89 (112)
15 2ckl_A Polycomb group ring fin 99.3 2.4E-12 8.2E-17 94.2 5.1 67 89-163 14-84 (108)
16 2bay_A PRE-mRNA splicing facto 99.3 1E-12 3.5E-17 88.0 2.2 56 89-152 2-57 (61)
17 2csy_A Zinc finger protein 183 99.3 1.7E-12 5.8E-17 90.3 3.0 59 90-158 15-73 (81)
18 1jm7_B BARD1, BRCA1-associated 99.3 1.6E-12 5.4E-17 96.7 3.0 68 89-166 21-88 (117)
19 3hct_A TNF receptor-associated 99.3 2.6E-12 9E-17 95.6 3.7 67 89-163 17-83 (118)
20 2ckl_B Ubiquitin ligase protei 99.2 3.7E-12 1.3E-16 99.7 4.6 70 88-164 52-122 (165)
21 2ecw_A Tripartite motif-contai 99.2 6.7E-13 2.3E-17 92.0 0.2 60 90-155 19-81 (85)
22 2egp_A Tripartite motif-contai 99.2 1.9E-13 6.5E-18 94.1 -2.8 60 90-155 12-75 (79)
23 2ecy_A TNF receptor-associated 99.2 8.1E-12 2.8E-16 83.6 5.2 51 90-148 15-65 (66)
24 3i2d_A E3 SUMO-protein ligase 99.2 2.4E-12 8E-17 113.5 3.2 79 74-161 236-316 (371)
25 2ecv_A Tripartite motif-contai 99.2 1E-12 3.4E-17 91.1 0.6 60 90-155 19-81 (85)
26 2djb_A Polycomb group ring fin 99.2 9.2E-12 3.1E-16 84.8 4.5 54 90-151 15-68 (72)
27 2yur_A Retinoblastoma-binding 99.2 9.4E-12 3.2E-16 85.3 4.4 56 89-151 14-71 (74)
28 2ysl_A Tripartite motif-contai 99.2 9.5E-12 3.2E-16 84.3 4.3 53 90-148 20-72 (73)
29 3l11_A E3 ubiquitin-protein li 99.2 4.2E-12 1.4E-16 93.8 2.1 66 89-162 14-86 (115)
30 2ysj_A Tripartite motif-contai 99.2 3.1E-11 1.1E-15 79.9 4.7 45 89-139 19-63 (63)
31 4ayc_A E3 ubiquitin-protein li 99.1 3.1E-11 1.1E-15 92.1 4.5 47 90-145 53-99 (138)
32 3hcs_A TNF receptor-associated 99.1 2.3E-11 7.7E-16 95.6 3.7 66 89-162 17-82 (170)
33 1rmd_A RAG1; V(D)J recombinati 99.1 4.3E-11 1.5E-15 88.4 4.9 64 90-161 23-87 (116)
34 3knv_A TNF receptor-associated 99.1 6E-12 2E-16 97.1 -0.3 66 89-162 30-104 (141)
35 1g25_A CDK-activating kinase a 99.1 4.5E-11 1.6E-15 79.6 3.8 56 90-151 3-61 (65)
36 2ct2_A Tripartite motif protei 99.1 1.4E-10 4.9E-15 80.9 5.2 52 90-147 15-70 (88)
37 3ng2_A RNF4, snurf, ring finge 99.0 7.5E-11 2.6E-15 79.3 2.8 53 89-150 9-68 (71)
38 2ecj_A Tripartite motif-contai 99.0 1.5E-10 5.3E-15 74.8 3.9 44 90-139 15-58 (58)
39 4fo9_A E3 SUMO-protein ligase 99.0 1.6E-10 5.4E-15 101.6 4.5 78 74-160 202-281 (360)
40 2d8t_A Dactylidin, ring finger 99.0 4.6E-11 1.6E-15 81.0 0.6 49 90-147 15-63 (71)
41 2xeu_A Ring finger protein 4; 99.0 1E-10 3.5E-15 76.8 2.0 52 90-150 3-61 (64)
42 1e4u_A Transcriptional repress 98.9 1E-09 3.5E-14 76.6 4.7 54 89-148 10-65 (78)
43 2ea6_A Ring finger protein 4; 98.9 4.8E-10 1.6E-14 74.7 2.6 47 90-145 15-68 (69)
44 1wim_A KIAA0161 protein; ring 98.9 4.2E-10 1.4E-14 80.4 2.0 55 89-146 4-67 (94)
45 2ect_A Ring finger protein 126 98.9 8.1E-10 2.8E-14 75.8 3.0 55 90-152 15-71 (78)
46 4ap4_A E3 ubiquitin ligase RNF 98.8 1E-09 3.5E-14 81.5 2.3 52 90-150 7-65 (133)
47 1chc_A Equine herpes virus-1 r 98.8 1.7E-09 5.9E-14 72.1 3.1 47 90-144 5-51 (68)
48 2ecm_A Ring finger and CHY zin 98.8 3.7E-09 1.3E-13 67.5 3.1 48 89-144 4-54 (55)
49 1bor_A Transcription factor PM 98.7 2.1E-09 7.3E-14 69.9 1.5 46 89-146 5-50 (56)
50 2kiz_A E3 ubiquitin-protein li 98.7 6.7E-09 2.3E-13 69.5 4.0 50 90-145 14-63 (69)
51 2ep4_A Ring finger protein 24; 98.7 1.5E-08 5.2E-13 68.7 4.2 47 90-144 15-63 (74)
52 2l0b_A E3 ubiquitin-protein li 98.7 9.6E-09 3.3E-13 73.0 3.3 48 89-145 39-89 (91)
53 1v87_A Deltex protein 2; ring- 98.7 1.5E-08 5.2E-13 74.1 4.3 50 90-144 25-93 (114)
54 1x4j_A Ring finger protein 38; 98.7 7.8E-09 2.7E-13 70.5 2.5 48 90-145 23-72 (75)
55 2ecn_A Ring finger protein 141 98.7 2.9E-09 1E-13 71.5 0.2 48 90-147 15-62 (70)
56 1iym_A EL5; ring-H2 finger, ub 98.7 1E-08 3.4E-13 65.6 2.6 47 90-144 5-54 (55)
57 4ap4_A E3 ubiquitin ligase RNF 98.6 1.2E-08 4E-13 75.6 1.1 52 90-150 72-130 (133)
58 3m62_A Ubiquitin conjugation f 98.5 5.1E-08 1.7E-12 94.6 4.9 70 90-168 891-961 (968)
59 2y1n_A E3 ubiquitin-protein li 98.5 8.2E-08 2.8E-12 85.3 4.2 49 90-146 332-380 (389)
60 4ic3_A E3 ubiquitin-protein li 98.4 6.3E-08 2.2E-12 66.3 1.5 42 90-144 24-66 (74)
61 2ecl_A Ring-box protein 2; RNF 98.4 9.6E-08 3.3E-12 66.4 2.4 49 90-146 15-77 (81)
62 2ecg_A Baculoviral IAP repeat- 98.4 1.7E-07 6E-12 64.0 3.0 43 90-145 25-68 (75)
63 2vje_B MDM4 protein; proto-onc 98.1 1.3E-06 4.3E-11 58.0 3.3 47 89-144 6-55 (63)
64 2vje_A E3 ubiquitin-protein li 98.1 1.2E-06 4.1E-11 58.3 3.2 46 90-144 8-56 (64)
65 3dpl_R Ring-box protein 1; ubi 98.1 2.1E-06 7.2E-11 63.0 4.3 47 90-144 37-100 (106)
66 2yho_A E3 ubiquitin-protein li 97.9 1.9E-06 6.6E-11 59.7 0.9 42 90-144 18-60 (79)
67 3t6p_A Baculoviral IAP repeat- 97.8 2.1E-06 7E-11 75.1 -0.1 42 90-144 295-337 (345)
68 4a0k_B E3 ubiquitin-protein li 97.8 2.3E-06 7.8E-11 64.1 0.0 46 91-144 49-111 (117)
69 2ea5_A Cell growth regulator w 97.7 1.9E-05 6.4E-10 53.2 2.5 42 90-144 15-57 (68)
70 2d8s_A Cellular modulator of i 97.6 4.7E-05 1.6E-09 53.0 3.4 51 90-145 15-70 (80)
71 3vk6_A E3 ubiquitin-protein li 97.5 7E-05 2.4E-09 54.5 3.8 45 92-143 3-47 (101)
72 2ct0_A Non-SMC element 1 homol 97.2 0.00043 1.5E-08 47.6 4.7 48 91-144 16-63 (74)
73 3k1l_B Fancl; UBC, ring, RWD, 95.9 0.0017 5.7E-08 57.0 0.8 50 90-144 308-372 (381)
74 2jun_A Midline-1; B-BOX, TRIM, 95.6 0.0068 2.3E-07 42.8 2.9 35 90-126 3-38 (101)
75 1vyx_A ORF K3, K3RING; zinc-bi 95.2 0.019 6.4E-07 37.5 3.6 47 91-144 7-58 (60)
76 3nw0_A Non-structural maintena 93.2 0.081 2.8E-06 43.6 4.3 48 91-144 181-228 (238)
77 1dvp_A HRS, hepatocyte growth 88.1 1.4 4.7E-05 35.3 7.0 33 90-122 161-193 (220)
78 3zyq_A Hepatocyte growth facto 87.2 1.5 5.3E-05 35.4 6.8 33 90-122 164-196 (226)
79 1joc_A EEA1, early endosomal a 84.0 0.35 1.2E-05 35.9 1.3 32 91-122 70-101 (125)
80 2cs3_A Protein C14ORF4, MY039 83.7 1.2 4.2E-05 31.0 3.9 34 90-127 15-52 (93)
81 2gmg_A Hypothetical protein PF 81.6 0.52 1.8E-05 34.3 1.4 30 102-141 63-92 (105)
82 1wfk_A Zinc finger, FYVE domai 81.4 0.51 1.8E-05 32.9 1.3 35 88-122 7-41 (88)
83 1vfy_A Phosphatidylinositol-3- 80.8 0.58 2E-05 31.3 1.3 30 92-121 13-42 (73)
84 2yw8_A RUN and FYVE domain-con 79.2 0.61 2.1E-05 31.9 1.0 31 92-122 21-51 (82)
85 3knv_A TNF receptor-associated 78.6 0.16 5.4E-06 38.3 -2.4 56 90-148 66-121 (141)
86 1z2q_A LM5-1; membrane protein 78.5 0.7 2.4E-05 31.7 1.2 34 90-123 21-54 (84)
87 3t7l_A Zinc finger FYVE domain 77.6 0.82 2.8E-05 31.9 1.3 32 91-122 21-52 (90)
88 3mjh_B Early endosome antigen 76.1 0.74 2.5E-05 26.8 0.6 15 90-107 5-19 (34)
89 1x4u_A Zinc finger, FYVE domai 76.0 0.87 3E-05 31.2 1.1 31 91-121 15-45 (84)
90 2dmd_A Zinc finger protein 64, 75.8 3.9 0.00013 26.8 4.4 55 88-144 6-75 (96)
91 2kmk_A Zinc finger protein GFI 75.2 3.4 0.00012 26.1 3.8 38 105-144 28-68 (82)
92 2k5c_A Uncharacterized protein 73.1 1.3 4.3E-05 31.0 1.3 58 91-152 9-70 (95)
93 2kpi_A Uncharacterized protein 73.0 1.2 4.1E-05 28.5 1.1 27 90-116 10-38 (56)
94 2ee8_A Protein ODD-skipped-rel 72.4 7.1 0.00024 26.0 5.1 54 89-144 16-84 (106)
95 3mpx_A FYVE, rhogef and PH dom 71.6 0.81 2.8E-05 39.7 0.0 51 91-143 376-430 (434)
96 3hct_A TNF receptor-associated 70.3 1.4 4.9E-05 31.5 1.1 48 91-150 54-101 (118)
97 1weo_A Cellulose synthase, cat 70.1 10 0.00035 26.7 5.4 50 91-144 17-69 (93)
98 2yt9_A Zinc finger-containing 68.2 12 0.00042 24.1 5.5 55 88-144 5-76 (95)
99 1y02_A CARP2, FYVE-ring finger 67.2 1.8 6.1E-05 32.0 1.1 46 91-141 20-65 (120)
100 1ubd_C Protein (YY1 zinc finge 67.0 14 0.00049 25.1 5.9 59 90-148 34-110 (124)
101 2dlq_A GLI-kruppel family memb 66.5 8 0.00028 26.3 4.4 9 90-98 7-15 (124)
102 2lbm_A Transcriptional regulat 65.9 4.1 0.00014 30.9 2.9 45 91-141 64-116 (142)
103 2epq_A POZ-, at HOOK-, and zin 64.5 9.7 0.00033 21.2 3.9 31 106-136 10-43 (45)
104 4e17_B Catenin alpha-1; four h 64.2 3.3 0.00011 24.9 1.6 21 4-24 18-38 (40)
105 4gzn_C ZFP-57, zinc finger pro 63.9 5.8 0.0002 25.0 3.0 39 105-145 3-44 (60)
106 2jny_A Uncharacterized BCR; st 63.3 2.4 8.2E-05 28.2 1.0 11 90-100 10-20 (67)
107 2jr6_A UPF0434 protein NMA0874 61.5 2.8 9.6E-05 27.9 1.1 11 90-100 8-18 (68)
108 2hf1_A Tetraacyldisaccharide-1 61.4 2.7 9.3E-05 28.0 1.0 11 90-100 8-18 (68)
109 2pk7_A Uncharacterized protein 60.8 3 0.0001 27.8 1.2 11 90-100 8-18 (69)
110 2ctd_A Zinc finger protein 512 59.6 14 0.00048 25.0 4.6 38 106-145 34-74 (96)
111 1vd4_A Transcription initiatio 59.0 3.4 0.00012 25.5 1.1 37 106-144 14-50 (62)
112 2eps_A POZ-, at HOOK-, and zin 57.9 21 0.00073 20.8 4.8 24 119-144 26-52 (54)
113 2j7j_A Transcription factor II 56.8 9 0.00031 24.1 3.0 14 130-143 30-43 (85)
114 2kw0_A CCMH protein; oxidoredu 56.1 7.5 0.00026 27.3 2.6 37 130-168 22-59 (90)
115 1pft_A TFIIB, PFTFIIBN; N-term 54.7 5.2 0.00018 24.4 1.4 9 90-98 5-13 (50)
116 1yc5_A NAD-dependent deacetyla 53.7 15 0.00051 29.7 4.5 50 110-162 125-179 (246)
117 2kkx_A Uncharacterized protein 53.4 15 0.0005 26.4 3.8 52 89-146 26-80 (102)
118 2js4_A UPF0434 protein BB2007; 52.9 4 0.00014 27.2 0.7 11 90-100 8-18 (70)
119 2d9k_A FLN29 gene product; zin 51.9 5.6 0.00019 25.9 1.3 46 104-151 15-61 (75)
120 2epr_A POZ-, at HOOK-, and zin 50.8 17 0.00059 20.5 3.4 30 110-141 16-48 (48)
121 2i13_A AART; DNA binding, zinc 50.2 15 0.0005 27.3 3.7 36 106-143 105-143 (190)
122 2ko5_A Ring finger protein Z; 50.2 5.7 0.00019 28.3 1.2 47 88-144 26-72 (99)
123 4e18_B Catenin alpha-1; four h 50.1 8 0.00027 25.1 1.8 21 4-24 37-57 (59)
124 2rpc_A Zinc finger protein ZIC 49.4 23 0.0008 25.1 4.6 54 91-144 63-133 (155)
125 1bbo_A Human enhancer-binding 49.4 16 0.00055 21.2 3.1 32 111-144 6-40 (57)
126 3uk3_C Zinc finger protein 217 48.9 16 0.00054 21.2 3.0 14 129-144 30-43 (57)
127 1wff_A Riken cDNA 2810002D23 p 48.8 8.6 0.00029 26.7 1.9 29 89-119 24-52 (85)
128 2zet_C Melanophilin; complex, 47.3 6.5 0.00022 30.1 1.2 48 90-141 68-116 (153)
129 2hl7_A Cytochrome C-type bioge 47.2 12 0.00041 25.9 2.5 36 130-167 25-61 (84)
130 3pwf_A Rubrerythrin; non heme 47.2 8.8 0.0003 29.6 2.0 8 132-141 154-161 (170)
131 1x6e_A Zinc finger protein 24; 47.1 17 0.00057 22.5 3.1 24 119-144 28-53 (72)
132 2lce_A B-cell lymphoma 6 prote 45.9 18 0.00063 22.4 3.1 40 89-145 16-57 (74)
133 1vq8_Z 50S ribosomal protein L 45.0 6.6 0.00022 27.1 0.8 44 89-157 26-69 (83)
134 2k5r_A Uncharacterized protein 44.9 6.2 0.00021 28.1 0.7 11 90-100 8-18 (97)
135 2adr_A ADR1; transcription reg 44.7 19 0.00064 21.2 2.9 32 111-144 7-41 (60)
136 2wbs_A Krueppel-like factor 4; 44.6 26 0.00091 22.1 3.9 32 111-144 42-76 (89)
137 1yuz_A Nigerythrin; rubrythrin 44.2 7.9 0.00027 30.7 1.3 9 131-141 186-194 (202)
138 1lko_A Rubrerythrin all-iron(I 43.4 7.7 0.00026 30.4 1.1 8 132-141 172-179 (191)
139 1ma3_A SIR2-AF2, transcription 43.3 22 0.00075 28.8 3.9 49 111-162 128-182 (253)
140 2ytn_A Zinc finger protein 347 43.2 28 0.00095 19.2 3.4 30 107-136 13-45 (46)
141 1zbd_B Rabphilin-3A; G protein 42.8 6.5 0.00022 29.4 0.6 31 90-120 55-86 (134)
142 1wfl_A Zinc finger protein 216 42.6 11 0.00038 25.5 1.7 28 89-119 24-51 (74)
143 1wfh_A Zinc finger (AN1-like) 41.3 12 0.00042 24.6 1.7 28 89-119 14-41 (64)
144 1wg2_A Zinc finger (AN1-like) 40.9 12 0.00042 24.6 1.6 28 89-119 14-41 (64)
145 2eop_A Zinc finger protein 268 40.8 31 0.0011 18.9 3.4 27 110-136 16-45 (46)
146 2eod_A TNF receptor-associated 40.8 16 0.00054 22.3 2.1 39 104-144 8-48 (66)
147 2ebt_A Krueppel-like factor 5; 39.7 56 0.0019 20.9 5.0 53 90-144 15-86 (100)
148 2lcq_A Putative toxin VAPC6; P 39.4 5.5 0.00019 30.1 -0.3 27 107-144 133-159 (165)
149 2ema_A Zinc finger protein 347 39.4 30 0.001 19.0 3.1 31 106-136 12-45 (46)
150 1j8f_A SIRT2, sirtuin 2, isofo 39.2 17 0.00057 30.8 2.7 31 112-145 167-197 (323)
151 2el4_A Zinc finger protein 268 38.9 30 0.001 18.9 3.1 26 111-136 17-45 (46)
152 2lt7_A Transcriptional regulat 38.6 20 0.00067 25.9 2.7 55 88-144 20-89 (133)
153 2eq0_A Zinc finger protein 347 38.6 32 0.0011 18.9 3.2 31 106-136 12-45 (46)
154 1wfp_A Zinc finger (AN1-like) 38.2 15 0.00051 24.9 1.7 29 88-119 23-51 (74)
155 1twf_L ABC10-alpha, DNA-direct 38.1 17 0.00057 24.2 2.0 11 89-99 27-37 (70)
156 2eq4_A Zinc finger protein 224 38.0 34 0.0012 18.7 3.2 27 110-136 16-45 (46)
157 2eoe_A Zinc finger protein 347 38.0 30 0.001 19.0 3.0 30 107-136 13-45 (46)
158 2ytk_A Zinc finger protein 347 37.7 32 0.0011 18.9 3.0 18 119-136 26-45 (46)
159 2elz_A Zinc finger protein 224 37.7 38 0.0013 18.6 3.4 31 106-136 12-45 (46)
160 2eoq_A Zinc finger protein 224 37.7 35 0.0012 18.7 3.2 26 111-136 17-45 (46)
161 2epz_A Zinc finger protein 28 37.4 38 0.0013 18.6 3.4 31 106-136 12-45 (46)
162 2emy_A Zinc finger protein 268 37.4 33 0.0011 18.8 3.1 8 129-136 38-45 (46)
163 2drp_A Protein (tramtrack DNA- 37.2 25 0.00086 21.0 2.7 24 119-144 24-51 (66)
164 2ytd_A Zinc finger protein 473 37.1 34 0.0012 18.8 3.1 26 111-136 17-45 (46)
165 2dmi_A Teashirt homolog 3; zin 36.5 65 0.0022 21.4 5.1 13 130-144 79-91 (115)
166 2emh_A Zinc finger protein 484 36.5 33 0.0011 18.8 3.0 9 128-136 37-45 (46)
167 2ytm_A Zinc finger protein 28 36.4 40 0.0014 18.6 3.4 9 128-136 37-45 (46)
168 1llm_C Chimera of ZIF23-GCN4; 36.3 28 0.00097 22.2 3.0 23 120-144 18-42 (88)
169 1m3v_A FLIN4, fusion of the LI 36.3 24 0.00082 25.0 2.8 52 91-148 33-84 (122)
170 2cot_A Zinc finger protein 435 36.1 28 0.00097 21.6 2.9 24 119-144 32-57 (77)
171 2ene_A Zinc finger protein 347 36.1 38 0.0013 18.6 3.2 30 107-136 13-45 (46)
172 3glr_A NAD-dependent deacetyla 35.9 11 0.00038 31.6 1.0 32 111-145 144-175 (285)
173 2ytq_A Zinc finger protein 268 35.7 40 0.0014 18.5 3.3 26 111-136 17-45 (46)
174 2ytr_A Zinc finger protein 347 35.6 38 0.0013 18.5 3.2 27 110-136 16-45 (46)
175 2gqj_A Zinc finger protein KIA 35.4 11 0.00037 25.2 0.7 13 130-144 53-65 (98)
176 2eml_A Zinc finger protein 28 34.8 42 0.0014 18.4 3.2 18 119-136 26-45 (46)
177 2jne_A Hypothetical protein YF 34.6 1.3 4.3E-05 31.9 -4.3 42 89-144 31-72 (101)
178 2eov_A Zinc finger protein 484 34.6 45 0.0015 18.2 3.4 18 119-136 26-45 (46)
179 1x5w_A Zinc finger protein 64, 34.3 25 0.00084 21.4 2.3 24 119-144 23-48 (70)
180 6rxn_A Rubredoxin; electron tr 34.1 31 0.0011 21.0 2.6 10 130-141 29-38 (46)
181 2emp_A Zinc finger protein 347 34.1 40 0.0014 18.5 3.1 9 128-136 37-45 (46)
182 2eme_A Zinc finger protein 473 34.1 42 0.0014 18.3 3.2 18 119-136 26-45 (46)
183 2ct7_A Ring finger protein 31; 33.9 9.8 0.00034 25.8 0.3 29 90-120 24-57 (86)
184 2emf_A Zinc finger protein 484 33.8 38 0.0013 18.6 2.9 31 106-136 12-45 (46)
185 2em0_A Zinc finger protein 224 33.8 41 0.0014 18.4 3.1 8 129-136 38-45 (46)
186 2ytt_A Zinc finger protein 473 33.6 39 0.0013 18.6 3.0 8 129-136 38-45 (46)
187 1lv3_A Hypothetical protein YA 33.6 18 0.0006 24.1 1.5 13 88-100 7-19 (68)
188 1q1a_A HST2 protein; ternary c 33.4 21 0.0007 29.6 2.3 34 110-145 140-175 (289)
189 2em7_A Zinc finger protein 224 33.4 40 0.0014 18.5 3.0 8 129-136 38-45 (46)
190 2ytj_A Zinc finger protein 484 33.3 44 0.0015 18.3 3.2 26 111-136 17-45 (46)
191 2emm_A ZFP-95, zinc finger pro 33.2 43 0.0015 18.2 3.1 17 120-136 27-45 (46)
192 2jx1_A Myelin transcription fa 33.2 19 0.00066 20.3 1.4 11 132-142 2-12 (31)
193 2em9_A Zinc finger protein 224 33.1 43 0.0015 18.3 3.1 31 106-136 12-45 (46)
194 2ep2_A Zinc finger protein 484 33.0 44 0.0015 18.3 3.1 18 119-136 26-45 (46)
195 2ep0_A Zinc finger protein 28 32.7 44 0.0015 18.2 3.1 31 106-136 12-45 (46)
196 2ysp_A Zinc finger protein 224 32.5 38 0.0013 18.5 2.8 31 106-136 12-45 (46)
197 2eoo_A ZFP-95, zinc finger pro 32.3 45 0.0015 18.3 3.1 9 128-136 37-45 (46)
198 2emk_A Zinc finger protein 28 32.3 51 0.0017 18.0 3.3 8 129-136 38-45 (46)
199 2emx_A Zinc finger protein 268 32.2 44 0.0015 18.1 3.0 8 129-136 36-43 (44)
200 2em5_A ZFP-95, zinc finger pro 32.2 45 0.0015 18.3 3.1 18 119-136 26-45 (46)
201 2el6_A Zinc finger protein 268 32.2 46 0.0016 18.3 3.1 26 111-136 17-45 (46)
202 2pv0_B DNA (cytosine-5)-methyl 32.1 40 0.0014 29.5 4.0 47 90-142 93-148 (386)
203 2yso_A ZFP-95, zinc finger pro 32.1 47 0.0016 18.1 3.1 26 111-136 17-45 (46)
204 2em8_A Zinc finger protein 224 31.6 49 0.0017 18.1 3.2 17 120-136 27-45 (46)
205 2lv2_A Insulinoma-associated p 31.3 35 0.0012 22.8 2.8 39 90-145 28-68 (85)
206 4ayb_P DNA-directed RNA polyme 30.7 3.2 0.00011 25.8 -2.4 26 109-141 6-31 (48)
207 2en1_A Zinc finger protein 224 30.6 44 0.0015 18.2 2.9 27 110-136 16-45 (46)
208 2dlk_A Novel protein; ZF-C2H2 30.2 83 0.0028 19.1 4.4 6 131-136 68-73 (79)
209 2lri_C Autoimmune regulator; Z 29.8 38 0.0013 21.9 2.7 48 90-143 12-60 (66)
210 2en8_A Zinc finger protein 224 29.5 54 0.0018 17.8 3.1 30 107-136 13-45 (46)
211 2epw_A Zinc finger protein 268 29.4 40 0.0014 18.4 2.5 8 129-136 38-45 (46)
212 2d9h_A Zinc finger protein 692 28.5 41 0.0014 20.8 2.7 14 129-144 36-49 (78)
213 2enc_A Zinc finger protein 224 28.4 56 0.0019 17.8 3.0 26 111-136 17-45 (46)
214 1yk4_A Rubredoxin, RD; electro 28.2 22 0.00076 22.1 1.2 10 130-141 34-43 (52)
215 2jmo_A Parkin; IBR, E3 ligase, 27.9 19 0.00065 24.1 0.9 14 111-124 55-68 (80)
216 3h0g_L DNA-directed RNA polyme 27.9 35 0.0012 22.2 2.2 10 89-98 20-29 (63)
217 1k3s_A SIGE; type III, secreti 27.9 25 0.00085 25.4 1.6 30 68-98 13-49 (113)
218 2ely_A Zinc finger protein 224 27.7 41 0.0014 18.5 2.3 8 129-136 38-45 (46)
219 2yu8_A Zinc finger protein 347 27.6 37 0.0013 18.6 2.1 9 128-136 37-45 (46)
220 2en6_A Zinc finger protein 268 27.5 53 0.0018 17.9 2.8 26 111-136 17-45 (46)
221 3a1b_A DNA (cytosine-5)-methyl 27.4 52 0.0018 25.3 3.4 46 90-141 79-133 (159)
222 2wbt_A B-129; zinc finger; 2.7 27.3 66 0.0023 21.9 3.9 37 106-144 74-111 (129)
223 1s24_A Rubredoxin 2; electron 26.9 25 0.00085 24.4 1.4 37 90-141 35-76 (87)
224 2epx_A Zinc finger protein 28 26.9 81 0.0028 17.0 3.6 27 110-136 16-46 (47)
225 1wjp_A Zinc finger protein 295 26.7 44 0.0015 22.1 2.7 53 89-143 15-79 (107)
226 2epa_A Krueppel-like factor 10 26.5 59 0.002 19.6 3.1 26 119-144 33-60 (72)
227 1f2i_G Fusion of N-terminal 17 26.3 50 0.0017 20.0 2.8 23 120-144 36-60 (73)
228 2vrw_B P95VAV, VAV1, proto-onc 26.3 21 0.00072 30.4 1.1 32 90-121 357-389 (406)
229 2ep3_A Zinc finger protein 484 25.8 70 0.0024 17.4 3.1 27 110-136 16-45 (46)
230 2em2_A Zinc finger protein 28 25.2 72 0.0024 17.4 3.1 17 120-136 27-45 (46)
231 2jvx_A NF-kappa-B essential mo 24.6 23 0.00078 19.4 0.7 9 90-98 3-11 (28)
232 2jrp_A Putative cytoplasmic pr 24.6 24 0.00081 24.2 0.9 8 91-98 3-10 (81)
233 1wil_A KIAA1045 protein; ring 24.0 81 0.0028 21.9 3.5 48 90-141 15-75 (89)
234 1wfe_A Riken cDNA 2310008M20 p 23.9 36 0.0012 23.4 1.8 29 88-119 23-53 (86)
235 1pxe_A Neural zinc finger tran 23.6 38 0.0013 22.2 1.7 13 130-142 16-28 (63)
236 2ent_A Krueppel-like factor 15 23.5 79 0.0027 17.2 3.1 26 111-136 19-47 (48)
237 1zfo_A LAsp-1; LIM domain, zin 22.7 23 0.00079 19.3 0.5 28 90-120 3-30 (31)
238 2em4_A Zinc finger protein 28 22.6 83 0.0029 17.0 3.0 31 106-136 12-45 (46)
239 2ytg_A ZFP-95, zinc finger pro 22.1 35 0.0012 18.7 1.3 9 90-98 12-20 (46)
240 2eor_A Zinc finger protein 224 21.9 85 0.0029 16.9 3.0 8 129-136 38-45 (46)
241 1x4v_A Hypothetical protein LO 21.8 60 0.0021 21.0 2.4 28 89-119 11-40 (63)
242 2enf_A Zinc finger protein 347 21.5 1E+02 0.0035 16.6 3.3 7 130-136 39-45 (46)
243 1x61_A Thyroid receptor intera 21.3 1.3E+02 0.0043 18.6 4.0 34 90-126 33-66 (72)
244 2xqn_T Testin, TESS; metal-bin 21.3 55 0.0019 22.9 2.4 47 90-146 30-76 (126)
245 2epu_A Zinc finger protein 32; 21.2 81 0.0028 17.0 2.8 31 106-136 12-45 (45)
246 2en9_A Zinc finger protein 28 21.0 1.1E+02 0.0036 16.6 3.3 8 129-136 38-45 (46)
247 2ytp_A Zinc finger protein 484 20.8 92 0.0032 16.8 3.0 31 106-136 12-45 (46)
248 1e8j_A Rubredoxin; iron-sulfur 20.7 98 0.0034 19.0 3.2 10 130-141 35-44 (52)
249 2csh_A Zinc finger protein 297 20.6 79 0.0027 20.7 3.1 53 89-144 9-76 (110)
No 1
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=99.95 E-value=1.2e-28 Score=208.61 Aligned_cols=151 Identities=14% Similarity=0.398 Sum_probs=121.5
Q ss_pred hhhhhHHHHHHHHHHhhccC----CC---------------ChhhHHHHHHHHHhhhhccCCCCCCCChh-hhhHHHHHh
Q 029888 4 FGDCTHHSAAIQSVGNTYQP----GT---------------ELTDFKKLLVDEDAKSRAASSSVPPNDPL-HKFREAVWN 63 (186)
Q Consensus 4 ~~~~~~~~~al~~l~~~y~~----~~---------------~~~~f~~~~~~~~~~~~~~~~~~~~~~~~-~~F~~~i~~ 63 (186)
-++..++..+|+.+++.|.. -+ ..+++.+++.+.. ..+......+|++ +.||..+|.
T Consensus 77 ~~~~~~~~~~~~~~K~~yk~~~d~~~~~~~~twd~y~~~e~~ap~l~~~~~~~~---~~~~~~~~~~~~~~~~lk~~~~i 153 (267)
T 3htk_C 77 ESESNSFDEHIKDLKKNFKQSSDACPQIDLSTWDKYRTGELTAPKLSELYLNMP---TPEPATMVNNTDTLKILKVLPYI 153 (267)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSCCCCTTHHHHHHHTSSCCCCHHHHHHTCC---CCSCCSCCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHhcCCcCCchHHHHHHhcc---ccCcccccccchHHHHHHHcccc
Confidence 45667788888888877752 12 2457777776432 1223334556888 999999999
Q ss_pred hcCCCCCCCC----CCCcceEEeccCCccceeeccCcCCCCccccCCccccCCCccccHHHHHHHHHhcCCCCCCCCCCC
Q 029888 64 VHHAGELMPG----EEQEDIVMTSTQSNILNISCPLSGKPITELAEPVRSVECKHIYEKNAIQAYIKSKNANARCPVAGC 139 (186)
Q Consensus 64 ~~~~g~~~~~----d~ddDi~i~~~~~~~~~l~CPI~~~~~~~l~dPV~s~~CgH~fck~~I~~~l~~~~~~~~CPv~GC 139 (186)
+++|+.++|+ ++||||+|++ ...+++||||+. +|++||+++.|||+||+.||..||. .++...||++||
T Consensus 154 ~~~P~~~lPd~~~~~dDDDI~v~~---~~~el~CPIcl~---~f~DPVts~~CGHsFcR~cI~~~~~-~~~~~~CPvtGC 226 (267)
T 3htk_C 154 WNDPTCVIPDLQNPADEDDLQIEG---GKIELTCPITCK---PYEAPLISRKCNHVFDRDGIQNYLQ-GYTTRDCPQAAC 226 (267)
T ss_dssp HHCTTBCCCCCSSTTCSSCCCCCS---SBCCSBCTTTSS---BCSSEEEESSSCCEEEHHHHHHHST-TCSCEECSGGGC
T ss_pred ccCCCCCCCCCCCCCCCccceecC---CceeeECcCccC---cccCCeeeCCCCCcccHHHHHHHHH-hCCCCCCCcccc
Confidence 9999999986 5788999984 568999999997 7899999779999999999999998 356678999999
Q ss_pred CCCccCCCCccCHHHHHHHHHHHhc
Q 029888 140 PRKLQVSKVVCDSLLLVDIDEMRRT 164 (186)
Q Consensus 140 ~~~l~~~~L~~d~~L~~~I~~~r~~ 164 (186)
++.+...+|++|..|.++|+.++++
T Consensus 227 r~~l~~~dL~pN~~L~~lve~~k~r 251 (267)
T 3htk_C 227 SQVVSMRDFVRDPIMELRCKIAKMK 251 (267)
T ss_dssp SCEECGGGEEECHHHHHHHHHHHHH
T ss_pred cCcCchhhCCcCHHHHHHHHHHHHH
Confidence 9999999999999999999887664
No 2
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=2.2e-19 Score=129.88 Aligned_cols=77 Identities=30% Similarity=0.633 Sum_probs=66.8
Q ss_pred CccceeeccCcCCCCccccCCccccCCCccccHHHHHHHHHhc---CCCCCCCCCCCCCC-ccCCCCccCHHHHHHHHHH
Q 029888 86 SNILNISCPLSGKPITELAEPVRSVECKHIYEKNAIQAYIKSK---NANARCPVAGCPRK-LQVSKVVCDSLLLVDIDEM 161 (186)
Q Consensus 86 ~~~~~l~CPI~~~~~~~l~dPV~s~~CgH~fck~~I~~~l~~~---~~~~~CPv~GC~~~-l~~~~L~~d~~L~~~I~~~ 161 (186)
+....|.||||+. +|++||+...|||+||+.||..||... .+...||++||++. +...+|++|..|+++|+.+
T Consensus 3 ~~~~~~~CPI~~~---~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~pn~~L~~~I~~~ 79 (94)
T 2yu4_A 3 SGSSGFTCPITKE---EMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQDEALRRAIENH 79 (94)
T ss_dssp SCSSCCBCTTTCS---BCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEECHHHHHHHHHH
T ss_pred CCCcEeECcCcCc---hhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcCCHHHHHHHHHH
Confidence 3456899999997 789999943699999999999999842 24678999999988 9999999999999999999
Q ss_pred HhcC
Q 029888 162 RRTS 165 (186)
Q Consensus 162 r~~~ 165 (186)
++..
T Consensus 80 ~~~~ 83 (94)
T 2yu4_A 80 NKKR 83 (94)
T ss_dssp HTTC
T ss_pred HHHh
Confidence 8763
No 3
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.70 E-value=6.5e-18 Score=120.15 Aligned_cols=68 Identities=18% Similarity=0.218 Sum_probs=61.4
Q ss_pred eeeccCcCCCCccccCCccccCCCccccHHHHHHHHHhcCCCCCCCCCCCCCCccCCCCccCHHHHHHHHHHHhcCc
Q 029888 90 NISCPLSGKPITELAEPVRSVECKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQVSKVVCDSLLLVDIDEMRRTSK 166 (186)
Q Consensus 90 ~l~CPI~~~~~~~l~dPV~s~~CgH~fck~~I~~~l~~~~~~~~CPv~GC~~~l~~~~L~~d~~L~~~I~~~r~~~~ 166 (186)
.+.||||+. +|++||+ +.|||+||+.||..||.. ...||+ |+..+...+|.+|..|++.|+.++..+.
T Consensus 14 ~~~CpI~~~---~m~dPV~-~~cGhtf~r~~I~~~l~~---~~~cP~--~~~~l~~~~l~pn~~L~~~i~~~~~~~~ 81 (85)
T 2kr4_A 14 EFRDPLMDT---LMTDPVR-LPSGTVMDRSIILRHLLN---SPTDPF--NRQMLTESMLEPVPELKEQIQAWMREKQ 81 (85)
T ss_dssp TTBCTTTCS---BCSSEEE-CTTSCEEEHHHHHHHHHH---CSBCTT--TCCBCCGGGCEECHHHHHHHHHHHHHHH
T ss_pred heECcccCc---hhcCCeE-CCCCCEECHHHHHHHHhc---CCCCCC--CcCCCChHhcchHHHHHHHHHHHHHHhh
Confidence 799999997 8999999 779999999999999983 368999 9899999999999999999999987643
No 4
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.64 E-value=1.7e-16 Score=116.26 Aligned_cols=69 Identities=19% Similarity=0.230 Sum_probs=62.5
Q ss_pred eeeccCcCCCCccccCCccccCCCccccHHHHHHHHHhcCCCCCCCCCCCCCCccCCCCccCHHHHHHHHHHHhcCcc
Q 029888 90 NISCPLSGKPITELAEPVRSVECKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQVSKVVCDSLLLVDIDEMRRTSKE 167 (186)
Q Consensus 90 ~l~CPI~~~~~~~l~dPV~s~~CgH~fck~~I~~~l~~~~~~~~CPv~GC~~~l~~~~L~~d~~L~~~I~~~r~~~~~ 167 (186)
.+.||||+. +|++||+ +.|||+||+.||..||. . ...||+ |+..+...+|.+|..|++.|+.++..+++
T Consensus 29 ~~~CpI~~~---~m~dPV~-~~cGhtf~r~~I~~~l~-~--~~~cP~--~~~~l~~~~L~pn~~Lk~~I~~~~~~~~~ 97 (100)
T 2kre_A 29 EFRDPLMDT---LMTDPVR-LPSGTIMDRSIILRHLL-N--SPTDPF--NRQTLTESMLEPVPELKEQIQAWMREKQN 97 (100)
T ss_dssp TTBCTTTCS---BCSSEEE-ETTTEEEEHHHHHHHTT-S--CSBCSS--SCCBCCTTSSEECHHHHHHHHHHHHTTTC
T ss_pred hhCCcCccC---cccCCeE-CCCCCEEchHHHHHHHH-c--CCCCCC--CCCCCChhhceECHHHHHHHHHHHHHhhh
Confidence 799999997 8999999 67999999999999998 2 468999 99999999999999999999999887543
No 5
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.64 E-value=4e-16 Score=113.90 Aligned_cols=70 Identities=14% Similarity=0.206 Sum_probs=63.0
Q ss_pred eeeccCcCCCCccccCCccccCCC-ccccHHHHHHHHHhcCCCCCCCCCCCCCCccCCCCccCHHHHHHHHHHHhcCccc
Q 029888 90 NISCPLSGKPITELAEPVRSVECK-HIYEKNAIQAYIKSKNANARCPVAGCPRKLQVSKVVCDSLLLVDIDEMRRTSKET 168 (186)
Q Consensus 90 ~l~CPI~~~~~~~l~dPV~s~~Cg-H~fck~~I~~~l~~~~~~~~CPv~GC~~~l~~~~L~~d~~L~~~I~~~r~~~~~~ 168 (186)
.|.||||+. +|++||+ +.|| |+||+.||..||.. ...||+ |+..+...+|.+|..|++.|+.++......
T Consensus 22 ~~~CpI~~~---~m~dPV~-~~cG~htf~r~cI~~~l~~---~~~cP~--~~~~l~~~~L~pn~~Lk~~I~~~~~~~~~~ 92 (98)
T 1wgm_A 22 EFLDPIMST---LMCDPVV-LPSSRVTVDRSTIARHLLS---DQTDPF--NRSPLTMDQIRPNTELKEKIQRWLAERKQQ 92 (98)
T ss_dssp TTBCTTTCS---BCSSEEE-CTTTCCEEEHHHHHHHTTT---SCBCTT--TCSBCCTTTSEECHHHHHHHHHHHHHSTTC
T ss_pred hcCCcCccc---cccCCeE-CCCCCeEECHHHHHHHHHh---CCCCCC--CCCCCChhhceEcHHHHHHHHHHHHHcchh
Confidence 799999997 8999999 7899 99999999999983 358999 999999999999999999999998875443
No 6
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.61 E-value=4.2e-16 Score=107.77 Aligned_cols=68 Identities=22% Similarity=0.404 Sum_probs=61.9
Q ss_pred eeeccCcCCCCccccCCccccCCCccccHHHHHHHHHhcCCCCCCCCCCCCCCccCCCCccCHHHHHHHHHHHhcC
Q 029888 90 NISCPLSGKPITELAEPVRSVECKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQVSKVVCDSLLLVDIDEMRRTS 165 (186)
Q Consensus 90 ~l~CPI~~~~~~~l~dPV~s~~CgH~fck~~I~~~l~~~~~~~~CPv~GC~~~l~~~~L~~d~~L~~~I~~~r~~~ 165 (186)
.+.||||+. +|.+||+ +.|||+||+.||..|+.. +...||+ |+..+...+|.+|..|+..|+.+++++
T Consensus 8 ~~~C~IC~~---~~~~Pv~-~~CgH~fc~~Ci~~~~~~--~~~~CP~--C~~~~~~~~l~~n~~l~~~i~~~~~~~ 75 (78)
T 1t1h_A 8 YFRCPISLE---LMKDPVI-VSTGQTYERSSIQKWLDA--GHKTCPK--SQETLLHAGLTPNYVLKSLIALWCESN 75 (78)
T ss_dssp SSSCTTTSC---CCSSEEE-ETTTEEEEHHHHHHHHTT--TCCBCTT--TCCBCSSCCCEECTTTHHHHHHHHHHS
T ss_pred cCCCCCccc---cccCCEE-cCCCCeecHHHHHHHHHH--CcCCCCC--CcCCCChhhCccCHHHHHHHHHHHHHc
Confidence 689999997 7899999 789999999999999982 4678999 999999999999999999999998763
No 7
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=99.53 E-value=7e-15 Score=118.29 Aligned_cols=68 Identities=15% Similarity=0.190 Sum_probs=61.2
Q ss_pred eeeccCcCCCCccccCCccccCCCccccHHHHHHHHHhcCCCCCCCCCCCCCCccCCCCccCHHHHHHHHHHHhcC
Q 029888 90 NISCPLSGKPITELAEPVRSVECKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQVSKVVCDSLLLVDIDEMRRTS 165 (186)
Q Consensus 90 ~l~CPI~~~~~~~l~dPV~s~~CgH~fck~~I~~~l~~~~~~~~CPv~GC~~~l~~~~L~~d~~L~~~I~~~r~~~ 165 (186)
.|.||||+. +|.+||+ +.|||+||+.||..||.. ++. .||+ |+..+...+|.||..|+..|..++..+
T Consensus 106 ~f~CPI~~e---lm~DPV~-~~~Ghtfer~~I~~~l~~-~~~-tcP~--t~~~l~~~~L~pN~~Lk~~Ie~~~~~~ 173 (179)
T 2f42_A 106 YLCGKISFE---LMREPCI-TPSGITYDRKDIEEHLQR-VGH-FDPV--TRSPLTQDQLIPNLAMKEVIDAFIQEN 173 (179)
T ss_dssp GGBCTTTCS---BCSSEEE-CTTSCEEEHHHHHHHHHH-TCS-BCTT--TCCBCCGGGCEECHHHHHHHHHHHHHC
T ss_pred hhcccCccc---cCCCCeE-CCCCCEECHHHHHHHHHh-CCC-CCCC--CcCCCChhhCcchHHHHHHHHHHHHHC
Confidence 789999997 8899999 789999999999999984 333 6999 989999999999999999999998763
No 8
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.52 E-value=1.1e-14 Score=103.49 Aligned_cols=68 Identities=13% Similarity=0.439 Sum_probs=60.5
Q ss_pred eeeccCcCCCCccccCCccccC-CCccccHHHHHHHHHhcCCCCCCCCCCCCCCc-cCCCCccCHHHHHHHHHHHhc
Q 029888 90 NISCPLSGKPITELAEPVRSVE-CKHIYEKNAIQAYIKSKNANARCPVAGCPRKL-QVSKVVCDSLLLVDIDEMRRT 164 (186)
Q Consensus 90 ~l~CPI~~~~~~~l~dPV~s~~-CgH~fck~~I~~~l~~~~~~~~CPv~GC~~~l-~~~~L~~d~~L~~~I~~~r~~ 164 (186)
.+.||||+. +|.+||+ +. |||+||+.||..|+.. .+...||+ |+..+ ....|.+|..|...|+.++..
T Consensus 13 ~~~C~IC~~---~~~~p~~-~~~CgH~fC~~Ci~~~~~~-~~~~~CP~--Cr~~~~~~~~~~~n~~l~~~i~~~~~~ 82 (92)
T 3ztg_A 13 ELLCLICKD---IMTDAVV-IPCCGNSYCDECIRTALLE-SDEHTCPT--CHQNDVSPDALIANKFLRQAVNNFKNE 82 (92)
T ss_dssp TTEETTTTE---ECSSCEE-CTTTCCEECHHHHHHHHHH-CTTCCCTT--TCCSSCCTTSCEECHHHHHHHHHHHHH
T ss_pred CCCCCCCCh---hhcCceE-CCCCCCHHHHHHHHHHHHh-cCCCcCcC--CCCcCCCccccCcCHHHHHHHHHHHHH
Confidence 689999996 7899999 77 9999999999999983 45679999 99987 678999999999999999875
No 9
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.51 E-value=7e-15 Score=122.23 Aligned_cols=69 Identities=14% Similarity=0.155 Sum_probs=61.5
Q ss_pred ceeeccCcCCCCccccCCccccCCCccccHHHHHHHHHhcCCCCCCCCCCCCCCccCCCCccCHHHHHHHHHHHhcC
Q 029888 89 LNISCPLSGKPITELAEPVRSVECKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQVSKVVCDSLLLVDIDEMRRTS 165 (186)
Q Consensus 89 ~~l~CPI~~~~~~~l~dPV~s~~CgH~fck~~I~~~l~~~~~~~~CPv~GC~~~l~~~~L~~d~~L~~~I~~~r~~~ 165 (186)
..+.||||+. +|.+||+ +.|||+||+.||..||.. ++ ..||+ |+..++..+|.+|..|+..|+.++..+
T Consensus 207 ~~~~c~i~~~---~~~dPv~-~~~gh~f~~~~i~~~~~~-~~-~~cP~--~~~~~~~~~l~~n~~l~~~i~~~~~~~ 275 (281)
T 2c2l_A 207 DYLCGKISFE---LMREPCI-TPSGITYDRKDIEEHLQR-VG-HFNPV--TRSPLTQEQLIPNLAMKEVIDAFISEN 275 (281)
T ss_dssp STTBCTTTCS---BCSSEEE-CSSCCEEETTHHHHHHHH-TC-SSCTT--TCCCCCGGGCEECHHHHHHHHHHHTTC
T ss_pred cccCCcCcCC---HhcCCeE-CCCCCEECHHHHHHHHHH-CC-CCCcC--CCCCCchhcCcccHHHHHHHHHHHHHC
Confidence 3789999997 8899999 789999999999999984 33 34999 999999999999999999999998764
No 10
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.42 E-value=2.4e-13 Score=101.93 Aligned_cols=67 Identities=15% Similarity=0.320 Sum_probs=59.1
Q ss_pred eeeccCcCCCCccccCCccccCCCccccHHHHHHHHHhcCCCCCCCCCCCCCCccC-CCCccCHHHHHHHHHHHhc
Q 029888 90 NISCPLSGKPITELAEPVRSVECKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQV-SKVVCDSLLLVDIDEMRRT 164 (186)
Q Consensus 90 ~l~CPI~~~~~~~l~dPV~s~~CgH~fck~~I~~~l~~~~~~~~CPv~GC~~~l~~-~~L~~d~~L~~~I~~~r~~ 164 (186)
.+.||||+. .|.+||+ +.|||+||+.||..|+. .+...||+ |+..+.. ..|.+|..|...|+.+...
T Consensus 52 ~~~C~IC~~---~~~~p~~-~~CgH~fC~~Ci~~~~~--~~~~~CP~--Cr~~~~~~~~~~~n~~l~~~i~~~~p~ 119 (124)
T 3fl2_A 52 TFQCICCQE---LVFRPIT-TVCQHNVCKDCLDRSFR--AQVFSCPA--CRYDLGRSYAMQVNQPLQTVLNQLFPG 119 (124)
T ss_dssp HTBCTTTSS---BCSSEEE-CTTSCEEEHHHHHHHHH--TTCCBCTT--TCCBCCTTCCCCCCHHHHHHHHHHSTT
T ss_pred CCCCCcCCh---HHcCcEE-eeCCCcccHHHHHHHHh--HCcCCCCC--CCccCCCCCCCCCCHHHHHHHHHHccc
Confidence 578999997 7899999 89999999999999998 35568999 9999887 8899999999999887644
No 11
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.40 E-value=1.9e-13 Score=98.55 Aligned_cols=70 Identities=13% Similarity=0.298 Sum_probs=61.1
Q ss_pred eeeccCcCCCCccccCCccccCCCccccHHHHHHHHHhcCCCCCCCCCCCCCCccCCCCccCHHHHHHHHHHHhcCcc
Q 029888 90 NISCPLSGKPITELAEPVRSVECKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQVSKVVCDSLLLVDIDEMRRTSKE 167 (186)
Q Consensus 90 ~l~CPI~~~~~~~l~dPV~s~~CgH~fck~~I~~~l~~~~~~~~CPv~GC~~~l~~~~L~~d~~L~~~I~~~r~~~~~ 167 (186)
.+.||||+. .|.+||..+.|||+||+.||..|+. ....||+ |+..+...+|.+|..|...|+.++.....
T Consensus 22 ~~~C~IC~~---~~~~p~~~~~CgH~fC~~Ci~~~~~---~~~~CP~--Cr~~~~~~~l~~n~~l~~~i~~~~~~~~~ 91 (99)
T 2y43_A 22 LLRCGICFE---YFNIAMIIPQCSHNYCSLCIRKFLS---YKTQCPT--CCVTVTEPDLKNNRILDELVKSLNFARNH 91 (99)
T ss_dssp HTBCTTTCS---BCSSEEECTTTCCEEEHHHHHHHHT---TCCBCTT--TCCBCCGGGCEECHHHHHHHHHHHHHHHT
T ss_pred CCCcccCCh---hhCCcCEECCCCCHhhHHHHHHHHH---CCCCCCC--CCCcCChhhCCcCHHHHHHHHHHHHHHHH
Confidence 588999997 7899998448999999999999998 2368999 99999999999999999999998876443
No 12
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.38 E-value=5.6e-13 Score=103.85 Aligned_cols=67 Identities=22% Similarity=0.379 Sum_probs=59.8
Q ss_pred eeeccCcCCCCccccCCccccCCCccccHHHHHHHHHhcCCCCCCCCCCCCCCccCC-CCccCHHHHHHHHHHHhc
Q 029888 90 NISCPLSGKPITELAEPVRSVECKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQVS-KVVCDSLLLVDIDEMRRT 164 (186)
Q Consensus 90 ~l~CPI~~~~~~~l~dPV~s~~CgH~fck~~I~~~l~~~~~~~~CPv~GC~~~l~~~-~L~~d~~L~~~I~~~r~~ 164 (186)
.+.||||+. .|.+||+ +.|||+||+.||..|+.. +...||+ |+..+... .|.+|..|...|..+...
T Consensus 78 ~~~C~IC~~---~~~~pv~-~~CgH~fC~~Ci~~~~~~--~~~~CP~--Cr~~~~~~~~l~~n~~l~~lv~~~~p~ 145 (150)
T 1z6u_A 78 SFMCVCCQE---LVYQPVT-TECFHNVCKDCLQRSFKA--QVFSCPA--CRHDLGQNYIMIPNEILQTLLDLFFPG 145 (150)
T ss_dssp HTBCTTTSS---BCSSEEE-CTTSCEEEHHHHHHHHHT--TCCBCTT--TCCBCCTTCCCCBCHHHHHHHHHHSTT
T ss_pred CCEeecCCh---hhcCCEE-cCCCCchhHHHHHHHHHh--CCCcCCC--CCccCCCCCCCCCCHHHHHHHHHHhhH
Confidence 588999997 7899999 899999999999999983 4568999 99999887 899999999999988654
No 13
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.36 E-value=5e-13 Score=97.03 Aligned_cols=71 Identities=15% Similarity=0.281 Sum_probs=60.6
Q ss_pred ceeeccCcCCCCccccCCccccCCCccccHHHHHHHHHhcCCCCCCCCCCCCCCccCCCCccCHHHHHHHHHHHhcCc
Q 029888 89 LNISCPLSGKPITELAEPVRSVECKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQVSKVVCDSLLLVDIDEMRRTSK 166 (186)
Q Consensus 89 ~~l~CPI~~~~~~~l~dPV~s~~CgH~fck~~I~~~l~~~~~~~~CPv~GC~~~l~~~~L~~d~~L~~~I~~~r~~~~ 166 (186)
..+.||||+. .|.+||..+.|||+||+.||..|+.. ....||+ |+..+...+|..+..+...++.+.+...
T Consensus 21 ~~~~C~IC~~---~~~~p~~~~~CgH~FC~~Ci~~~~~~--~~~~CP~--Cr~~~~~~~l~~~~~~~~i~~~~~~l~~ 91 (100)
T 3lrq_A 21 EVFRCFICME---KLRDARLCPHCSKLCCFSCIRRWLTE--QRAQCPH--CRAPLQLRELVNCRWAEEVTQQLDTLQL 91 (100)
T ss_dssp HHTBCTTTCS---BCSSEEECTTTCCEEEHHHHHHHHHH--TCSBCTT--TCCBCCGGGCEECTTHHHHHHHHHHHCC
T ss_pred CCCCCccCCc---cccCccccCCCCChhhHHHHHHHHHH--CcCCCCC--CCCcCCHHHhHhhHHHHHHHHHHHHHHH
Confidence 3688999997 78999986789999999999999984 2368999 9999999999999888888777766543
No 14
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.36 E-value=4e-13 Score=98.25 Aligned_cols=69 Identities=20% Similarity=0.516 Sum_probs=58.7
Q ss_pred eeeccCcCCCCccccCCccccCCCccccHHHHHHHHHhcCCCCCCCCCCCCCCccCCCCccCHHHHHHHHHHHhc
Q 029888 90 NISCPLSGKPITELAEPVRSVECKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQVSKVVCDSLLLVDIDEMRRT 164 (186)
Q Consensus 90 ~l~CPI~~~~~~~l~dPV~s~~CgH~fck~~I~~~l~~~~~~~~CPv~GC~~~l~~~~L~~d~~L~~~I~~~r~~ 164 (186)
.+.||||+. .|.+|+. +.|||+||+.||..|+....+...||+ |+..+...++.++..+...++.+++.
T Consensus 21 ~~~C~IC~~---~~~~p~~-~~CgH~fC~~Ci~~~~~~~~~~~~CP~--Cr~~~~~~~~~~~~~l~~~~~~~~~~ 89 (112)
T 1jm7_A 21 ILECPICLE---LIKEPVS-TKCDHIFCKFCMLKLLNQKKGPSQCPL--CKNDITKRSLQESTRFSQLVEELLKI 89 (112)
T ss_dssp HTSCSSSCC---CCSSCCB-CTTSCCCCSHHHHHHHHSSSSSCCCTT--TSCCCCTTTCBCCCSSSHHHHHHHHH
T ss_pred CCCCcccCh---hhcCeEE-CCCCCHHHHHHHHHHHHhCCCCCCCcC--CCCcCCHhhcCccHHHHHHHHHHHHH
Confidence 578999997 7799999 899999999999999984344578999 99999999999987777777776654
No 15
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.29 E-value=2.4e-12 Score=94.20 Aligned_cols=67 Identities=21% Similarity=0.486 Sum_probs=57.2
Q ss_pred ceeeccCcCCCCccccCCccccCCCccccHHHHHHHHHhcCCCCCCCCCCCCCCccCC----CCccCHHHHHHHHHHHh
Q 029888 89 LNISCPLSGKPITELAEPVRSVECKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQVS----KVVCDSLLLVDIDEMRR 163 (186)
Q Consensus 89 ~~l~CPI~~~~~~~l~dPV~s~~CgH~fck~~I~~~l~~~~~~~~CPv~GC~~~l~~~----~L~~d~~L~~~I~~~r~ 163 (186)
..+.||||+. .|.+||+...|||+||+.||..|+.. ...||+ |+..+... .|.+|..|...|..+..
T Consensus 14 ~~~~C~IC~~---~~~~p~~~~~CgH~fC~~Ci~~~~~~---~~~CP~--Cr~~~~~~~~~~~l~~n~~l~~~i~~~~~ 84 (108)
T 2ckl_A 14 PHLMCVLCGG---YFIDATTIIECLHSFCKTCIVRYLET---SKYCPI--CDVQVHKTRPLLNIRSDKTLQDIVYKLVP 84 (108)
T ss_dssp GGTBCTTTSS---BCSSEEEETTTCCEEEHHHHHHHHTS---CSBCTT--TCCBSCSSCGGGGEEECHHHHHHHHHHST
T ss_pred CcCCCccCCh---HHhCcCEeCCCCChhhHHHHHHHHHh---CCcCcC--CCccccccCcccccCcCHHHHHHHHHHhh
Confidence 3689999997 78999994499999999999999982 378999 99988765 78899999988887654
No 16
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=99.27 E-value=1e-12 Score=88.03 Aligned_cols=56 Identities=27% Similarity=0.499 Sum_probs=46.1
Q ss_pred ceeeccCcCCCCccccCCccccCCCccccHHHHHHHHHhcCCCCCCCCCCCCCCccCCCCccCH
Q 029888 89 LNISCPLSGKPITELAEPVRSVECKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQVSKVVCDS 152 (186)
Q Consensus 89 ~~l~CPI~~~~~~~l~dPV~s~~CgH~fck~~I~~~l~~~~~~~~CPv~GC~~~l~~~~L~~d~ 152 (186)
.++.||||++ +|++||.+..|||+||+.||++||.. ++ .||+ ++..|...+|++..
T Consensus 2 ~~~~CpIs~~---~m~dPV~~~~sG~~yer~~I~~~l~~-~~--~cP~--t~~~L~~~~Lip~~ 57 (61)
T 2bay_A 2 SHMLCAISGK---VPRRPVLSPKSRTIFEKSLLEQYVKD-TG--NDPI--TNEPLSIEEIVEIV 57 (61)
T ss_dssp --CCCTTTCS---CCSSEEEETTTTEEEEHHHHHHHHHH-HS--BCTT--TCCBCCGGGCEECC
T ss_pred CeEEecCCCC---CCCCCEEeCCCCcEEcHHHHHHHHHh-CC--CCcC--CcCCCChhhcEECc
Confidence 3689999997 78999994489999999999999984 32 4999 66889989988763
No 17
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.26 E-value=1.7e-12 Score=90.25 Aligned_cols=59 Identities=15% Similarity=0.425 Sum_probs=48.9
Q ss_pred eeeccCcCCCCccccCCccccCCCccccHHHHHHHHHhcCCCCCCCCCCCCCCccCCCCccCHHHHHHH
Q 029888 90 NISCPLSGKPITELAEPVRSVECKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQVSKVVCDSLLLVDI 158 (186)
Q Consensus 90 ~l~CPI~~~~~~~l~dPV~s~~CgH~fck~~I~~~l~~~~~~~~CPv~GC~~~l~~~~L~~d~~L~~~I 158 (186)
.+.||||+. .|.+||. +.|||+||+.||..|+.. ...||+ |+..+. ..+.++..|..++
T Consensus 15 ~~~C~IC~~---~~~~p~~-~~CgH~fC~~Ci~~~~~~---~~~CP~--Cr~~~~-~~~~~~~~l~~~~ 73 (81)
T 2csy_A 15 PFRCFICRQ---AFQNPVV-TKCRHYFCESCALEHFRA---TPRCYI--CDQPTG-GIFNPAKELMAKL 73 (81)
T ss_dssp CSBCSSSCS---BCCSEEE-CTTSCEEEHHHHHHHHHH---CSBCSS--SCCBCC-SCCEECHHHHHHH
T ss_pred CCCCcCCCc---hhcCeeE-ccCCCHhHHHHHHHHHHC---CCcCCC--cCcccc-ccCCcHHHHHHHH
Confidence 578999997 7799998 899999999999999983 468999 999886 6777876554433
No 18
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.26 E-value=1.6e-12 Score=96.67 Aligned_cols=68 Identities=24% Similarity=0.376 Sum_probs=59.0
Q ss_pred ceeeccCcCCCCccccCCccccCCCccccHHHHHHHHHhcCCCCCCCCCCCCCCccCCCCccCHHHHHHHHHHHhcCc
Q 029888 89 LNISCPLSGKPITELAEPVRSVECKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQVSKVVCDSLLLVDIDEMRRTSK 166 (186)
Q Consensus 89 ~~l~CPI~~~~~~~l~dPV~s~~CgH~fck~~I~~~l~~~~~~~~CPv~GC~~~l~~~~L~~d~~L~~~I~~~r~~~~ 166 (186)
..+.||||+. +|.+||....|||+||+.||..|+. ..||+ |+..+...+|.+|..|...|..++....
T Consensus 21 ~~~~C~IC~~---~~~~pv~~~~CgH~fC~~Ci~~~~~-----~~CP~--Cr~~~~~~~~~~n~~l~~l~~~~~~~~~ 88 (117)
T 1jm7_B 21 KLLRCSRCTN---ILREPVCLGGCEHIFCSNCVSDCIG-----TGCPV--CYTPAWIQDLKINRQLDSMIQLCSKLRN 88 (117)
T ss_dssp HTTSCSSSCS---CCSSCBCCCSSSCCBCTTTGGGGTT-----TBCSS--SCCBCSCSSCCCCHHHHHHHHHHHHHHH
T ss_pred hCCCCCCCCh---HhhCccEeCCCCCHHHHHHHHHHhc-----CCCcC--CCCcCccccccccHHHHHHHHHHHHHHH
Confidence 3689999997 7899999338999999999999976 57999 9999999999999999999988876533
No 19
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.25 E-value=2.6e-12 Score=95.61 Aligned_cols=67 Identities=25% Similarity=0.399 Sum_probs=58.4
Q ss_pred ceeeccCcCCCCccccCCccccCCCccccHHHHHHHHHhcCCCCCCCCCCCCCCccCCCCccCHHHHHHHHHHHh
Q 029888 89 LNISCPLSGKPITELAEPVRSVECKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQVSKVVCDSLLLVDIDEMRR 163 (186)
Q Consensus 89 ~~l~CPI~~~~~~~l~dPV~s~~CgH~fck~~I~~~l~~~~~~~~CPv~GC~~~l~~~~L~~d~~L~~~I~~~r~ 163 (186)
..+.||||+. .|.+||. +.|||+||+.||..|+.. +...||+ |+..+...++.++..+.+.|..++-
T Consensus 17 ~~~~C~IC~~---~~~~p~~-~~CgH~fC~~Ci~~~~~~--~~~~CP~--Cr~~~~~~~~~~~~~l~~~i~~l~v 83 (118)
T 3hct_A 17 SKYECPICLM---ALREAVQ-TPCGHRFCKACIIKSIRD--AGHKCPV--DNEILLENQLFPDNFAKREILSLMV 83 (118)
T ss_dssp GGGBCTTTCS---BCSSEEE-CTTSCEEEHHHHHHHHHH--HCSBCTT--TCCBCCGGGCEECHHHHHHHHTSEE
T ss_pred CCCCCCcCCh---hhcCeEE-CCcCChhhHHHHHHHHhh--CCCCCCC--CCCCcCHHhcccCHHHHHHHcccee
Confidence 4689999997 7899999 799999999999999984 2348999 9999999999999999988887653
No 20
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.25 E-value=3.7e-12 Score=99.74 Aligned_cols=70 Identities=23% Similarity=0.436 Sum_probs=58.2
Q ss_pred cceeeccCcCCCCccccCCccccCCCccccHHHHHHHHHhcCCCCCCCCCCCCCCc-cCCCCccCHHHHHHHHHHHhc
Q 029888 88 ILNISCPLSGKPITELAEPVRSVECKHIYEKNAIQAYIKSKNANARCPVAGCPRKL-QVSKVVCDSLLLVDIDEMRRT 164 (186)
Q Consensus 88 ~~~l~CPI~~~~~~~l~dPV~s~~CgH~fck~~I~~~l~~~~~~~~CPv~GC~~~l-~~~~L~~d~~L~~~I~~~r~~ 164 (186)
...+.||||+. .|.+||+...|||+||+.||..|+.. +...||+ |+..+ ....|.+|..|...|..++..
T Consensus 52 ~~~~~C~IC~~---~~~~p~~~~~CgH~fC~~Ci~~~~~~--~~~~CP~--Cr~~~~~~~~l~~~~~l~~~i~~~~~~ 122 (165)
T 2ckl_B 52 HSELMCPICLD---MLKNTMTTKECLHRFCADCIITALRS--GNKECPT--CRKKLVSKRSLRPDPNFDALISKIYPS 122 (165)
T ss_dssp HHHHBCTTTSS---BCSSEEEETTTCCEEEHHHHHHHHHT--TCCBCTT--TCCBCCSGGGEEECHHHHHHHHHHC--
T ss_pred CCCCCCcccCh---HhhCcCEeCCCCChhHHHHHHHHHHh--CcCCCCC--CCCcCCCcccCCcCHHHHHHHHHHHcc
Confidence 34689999997 78999984499999999999999993 4578999 99987 456799999999999887553
No 21
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.25 E-value=6.7e-13 Score=91.96 Aligned_cols=60 Identities=23% Similarity=0.558 Sum_probs=51.2
Q ss_pred eeeccCcCCCCccccCCccccCCCccccHHHHHHHHHhc---CCCCCCCCCCCCCCccCCCCccCHHHH
Q 029888 90 NISCPLSGKPITELAEPVRSVECKHIYEKNAIQAYIKSK---NANARCPVAGCPRKLQVSKVVCDSLLL 155 (186)
Q Consensus 90 ~l~CPI~~~~~~~l~dPV~s~~CgH~fck~~I~~~l~~~---~~~~~CPv~GC~~~l~~~~L~~d~~L~ 155 (186)
.+.||||+. .|.+|+. +.|||+||+.||..|+... .+...||+ |+..+...+|.+|..|.
T Consensus 19 ~~~C~IC~~---~~~~p~~-~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~--Cr~~~~~~~~~~n~~l~ 81 (85)
T 2ecw_A 19 EVTCPICLE---LLKEPVS-ADCNHSFCRACITLNYESNRNTDGKGNCPV--CRVPYPFGNLKPNLHVA 81 (85)
T ss_dssp TTSCTTTCS---CCSSCEE-CTTSCCBCHHHHHHHHHHSBCTTSCBCCTT--TCCCCCTTCCEECSCCC
T ss_pred CCCCcCCCh---hhCccee-CCCCCHHHHHHHHHHHHhccCCCCCCCCCC--CCCcCCHHhCCcCHHHH
Confidence 678999997 6799998 8899999999999999841 23688999 99999998998886544
No 22
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.24 E-value=1.9e-13 Score=94.09 Aligned_cols=60 Identities=23% Similarity=0.546 Sum_probs=50.8
Q ss_pred eeeccCcCCCCccccCCccccCCCccccHHHHHHHHHhc----CCCCCCCCCCCCCCccCCCCccCHHHH
Q 029888 90 NISCPLSGKPITELAEPVRSVECKHIYEKNAIQAYIKSK----NANARCPVAGCPRKLQVSKVVCDSLLL 155 (186)
Q Consensus 90 ~l~CPI~~~~~~~l~dPV~s~~CgH~fck~~I~~~l~~~----~~~~~CPv~GC~~~l~~~~L~~d~~L~ 155 (186)
.+.||||+. .|.+|+. +.|||+||+.||..|+... .+...||+ |+..+...+|.+|..|.
T Consensus 12 ~~~C~IC~~---~~~~p~~-l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~--Cr~~~~~~~l~~n~~l~ 75 (79)
T 2egp_A 12 EVTCPICLE---LLTEPLS-LDCGHSLCRACITVSNKEAVTSMGGKSSCPV--CGISYSFEHLQANQHLA 75 (79)
T ss_dssp CCEETTTTE---ECSSCCC-CSSSCCCCHHHHSCCCCCCSSSCCCCCCCSS--SCCCCCSSGGGTCSSSC
T ss_pred CCCCcCCCc---ccCCeeE-CCCCCHHHHHHHHHHHHhcccCCCCCCcCCC--CCCcCCHhhCCcCHHHH
Confidence 688999997 7899999 8999999999999999731 23678999 99999988888886553
No 23
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.24 E-value=8.1e-12 Score=83.56 Aligned_cols=51 Identities=22% Similarity=0.536 Sum_probs=45.0
Q ss_pred eeeccCcCCCCccccCCccccCCCccccHHHHHHHHHhcCCCCCCCCCCCCCCccCCCC
Q 029888 90 NISCPLSGKPITELAEPVRSVECKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQVSKV 148 (186)
Q Consensus 90 ~l~CPI~~~~~~~l~dPV~s~~CgH~fck~~I~~~l~~~~~~~~CPv~GC~~~l~~~~L 148 (186)
.+.||||+. .|.+|+. +.|||+||+.||..|+. .+...||+ |+..+...++
T Consensus 15 ~~~C~IC~~---~~~~p~~-~~CgH~fC~~Ci~~~~~--~~~~~CP~--Cr~~~~~~~i 65 (66)
T 2ecy_A 15 KYKCEKCHL---VLCSPKQ-TECGHRFCESCMAALLS--SSSPKCTA--CQESIVKDKV 65 (66)
T ss_dssp CEECTTTCC---EESSCCC-CSSSCCCCHHHHHHHHT--TSSCCCTT--TCCCCCTTTC
T ss_pred CCCCCCCCh---HhcCeeE-CCCCCHHHHHHHHHHHH--hCcCCCCC--CCcCCChhhc
Confidence 689999997 7899999 89999999999999996 25578999 9998887765
No 24
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.24 E-value=2.4e-12 Score=113.49 Aligned_cols=79 Identities=20% Similarity=0.465 Sum_probs=64.5
Q ss_pred CCCcceEEeccCCccceeeccCcCCCCccccCCccccCCCcc--ccHHHHHHHHHhcCCCCCCCCCCCCCCccCCCCccC
Q 029888 74 EEQEDIVMTSTQSNILNISCPLSGKPITELAEPVRSVECKHI--YEKNAIQAYIKSKNANARCPVAGCPRKLQVSKVVCD 151 (186)
Q Consensus 74 d~ddDi~i~~~~~~~~~l~CPI~~~~~~~l~dPV~s~~CgH~--fck~~I~~~l~~~~~~~~CPv~GC~~~l~~~~L~~d 151 (186)
++||||++++ .+++|+|||++. .|+.|+++..|.|. |+..++..+.. ..+.+.||+ |++.+...+|..|
T Consensus 236 d~DdDIv~~s---~~vSL~CPlS~~---ri~~PvRg~~C~HlQCFDl~sfL~~~~-~~~~W~CPI--C~k~~~~~dL~ID 306 (371)
T 3i2d_A 236 DEEMGLTTTS---TIMSLQCPISYT---RMKYPSKSINCKHLQCFDALWFLHSQL-QIPTWQCPV--CQIDIALENLAIS 306 (371)
T ss_dssp CC------CE---EEEESBCTTTSS---BCSSEEEETTCCSSCCEEHHHHHHHHH-HSCCCBCTT--TCCBCCGGGEEEB
T ss_pred CCCCceeeee---eEEeecCCCccc---cccccCcCCcCCCcceECHHHHHHHhh-cCCceeCCC--CCcccCHHHeeEc
Confidence 5677888774 579999999997 68999999999998 99999999887 578999999 9999999999999
Q ss_pred HHHHHHHHHH
Q 029888 152 SLLLVDIDEM 161 (186)
Q Consensus 152 ~~L~~~I~~~ 161 (186)
..+.++++..
T Consensus 307 ~~~~~IL~~~ 316 (371)
T 3i2d_A 307 EFVDDILQNC 316 (371)
T ss_dssp HHHHHHHTTS
T ss_pred HHHHHHHHhc
Confidence 9998877654
No 25
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.23 E-value=1e-12 Score=91.07 Aligned_cols=60 Identities=22% Similarity=0.555 Sum_probs=51.5
Q ss_pred eeeccCcCCCCccccCCccccCCCccccHHHHHHHHHh---cCCCCCCCCCCCCCCccCCCCccCHHHH
Q 029888 90 NISCPLSGKPITELAEPVRSVECKHIYEKNAIQAYIKS---KNANARCPVAGCPRKLQVSKVVCDSLLL 155 (186)
Q Consensus 90 ~l~CPI~~~~~~~l~dPV~s~~CgH~fck~~I~~~l~~---~~~~~~CPv~GC~~~l~~~~L~~d~~L~ 155 (186)
.+.||||+. .|.+|+. +.|||+||+.||..|+.. ..+...||+ |+..+...++.+|..|.
T Consensus 19 ~~~C~IC~~---~~~~p~~-~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~--Cr~~~~~~~~~~n~~l~ 81 (85)
T 2ecv_A 19 EVTCPICLE---LLTQPLS-LDCGHSFCQACLTANHKKSMLDKGESSCPV--CRISYQPENIRPNRHVA 81 (85)
T ss_dssp CCCCTTTCS---CCSSCBC-CSSSCCBCTTHHHHHHHHHHHTTSCCCCTT--TCCSSCSSSCCCSCCCC
T ss_pred CCCCCCCCc---ccCCcee-CCCCCHHHHHHHHHHHHHhhcCCCCCcCCC--CCCccCHHhcCccHHHH
Confidence 688999997 6799999 799999999999999984 235789999 99999998888886543
No 26
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.21 E-value=9.2e-12 Score=84.76 Aligned_cols=54 Identities=22% Similarity=0.435 Sum_probs=46.8
Q ss_pred eeeccCcCCCCccccCCccccCCCccccHHHHHHHHHhcCCCCCCCCCCCCCCccCCCCccC
Q 029888 90 NISCPLSGKPITELAEPVRSVECKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQVSKVVCD 151 (186)
Q Consensus 90 ~l~CPI~~~~~~~l~dPV~s~~CgH~fck~~I~~~l~~~~~~~~CPv~GC~~~l~~~~L~~d 151 (186)
.+.||||+. .|.+||..+.|||+||+.||..|+.. ...||+ |+..+...++..+
T Consensus 15 ~~~C~IC~~---~~~~p~~~~~CgH~fC~~Ci~~~~~~---~~~CP~--Cr~~~~~~~~~~~ 68 (72)
T 2djb_A 15 YILCSICKG---YLIDATTITECLHTFCKSCIVRHFYY---SNRCPK--CNIVVHQTQPLSG 68 (72)
T ss_dssp GGSCTTTSS---CCSSCEECSSSCCEECHHHHHHHHHH---CSSCTT--TCCCCCSSCSCCC
T ss_pred CCCCCCCCh---HHHCcCEECCCCCHHHHHHHHHHHHc---CCcCCC--cCcccCccccccc
Confidence 688999997 78999984599999999999999983 468999 9999988887664
No 27
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.21 E-value=9.4e-12 Score=85.34 Aligned_cols=56 Identities=14% Similarity=0.366 Sum_probs=44.9
Q ss_pred ceeeccCcCCCCccccCCccccC-CCccccHHHHHHHHHhcCCCCCCCCCCCCCCcc-CCCCccC
Q 029888 89 LNISCPLSGKPITELAEPVRSVE-CKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQ-VSKVVCD 151 (186)
Q Consensus 89 ~~l~CPI~~~~~~~l~dPV~s~~-CgH~fck~~I~~~l~~~~~~~~CPv~GC~~~l~-~~~L~~d 151 (186)
..+.||||+. .|.+||+ +. |||+||+.||..|+.. .+...||+ |+..+. .+.+.++
T Consensus 14 ~~~~C~IC~~---~~~~p~~-~~~CgH~fC~~Ci~~~~~~-~~~~~CP~--Cr~~~~~~~~~~~n 71 (74)
T 2yur_A 14 DELLCLICKD---IMTDAVV-IPCCGNSYCDECIRTALLE-SDEHTCPT--CHQNDVSPDALSGP 71 (74)
T ss_dssp GGGSCSSSCC---CCTTCEE-CSSSCCEECTTHHHHHHHH-SSSSCCSS--SCCSSCCTTTTTCT
T ss_pred CCCCCcCCCh---HHhCCeE-cCCCCCHHHHHHHHHHHHh-cCCCcCCC--CCCcCCCccccccC
Confidence 3688999997 7899999 77 9999999999999984 44578999 998643 4444443
No 28
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.21 E-value=9.5e-12 Score=84.35 Aligned_cols=53 Identities=21% Similarity=0.557 Sum_probs=45.7
Q ss_pred eeeccCcCCCCccccCCccccCCCccccHHHHHHHHHhcCCCCCCCCCCCCCCccCCCC
Q 029888 90 NISCPLSGKPITELAEPVRSVECKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQVSKV 148 (186)
Q Consensus 90 ~l~CPI~~~~~~~l~dPV~s~~CgH~fck~~I~~~l~~~~~~~~CPv~GC~~~l~~~~L 148 (186)
.+.||||+. .|.+|+. +.|||+||+.||..|+....+...||+ |+..+...++
T Consensus 20 ~~~C~IC~~---~~~~~~~-~~CgH~fC~~Ci~~~~~~~~~~~~CP~--Cr~~~~~~~~ 72 (73)
T 2ysl_A 20 EVICPICLD---ILQKPVT-IDCGHNFCLKCITQIGETSCGFFKCPL--CKTSVRKNAI 72 (73)
T ss_dssp CCBCTTTCS---BCSSEEE-CTTCCEEEHHHHHHHCSSSCSCCCCSS--SCCCCCCCCC
T ss_pred CCEeccCCc---ccCCeEE-cCCCChhhHHHHHHHHHcCCCCCCCCC--CCCcCCcccC
Confidence 688999997 7799999 799999999999999973345678999 9998887765
No 29
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.19 E-value=4.2e-12 Score=93.77 Aligned_cols=66 Identities=24% Similarity=0.459 Sum_probs=56.1
Q ss_pred ceeeccCcCCCCccccCCccccCCCccccHHHHHHHHHhcCCCCCCCCCCCCCCccC-------CCCccCHHHHHHHHHH
Q 029888 89 LNISCPLSGKPITELAEPVRSVECKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQV-------SKVVCDSLLLVDIDEM 161 (186)
Q Consensus 89 ~~l~CPI~~~~~~~l~dPV~s~~CgH~fck~~I~~~l~~~~~~~~CPv~GC~~~l~~-------~~L~~d~~L~~~I~~~ 161 (186)
..+.||||+. .|.+||+ +.|||+||+.||..|+.. +...||+ |+..+.. .++..|..|...|+.+
T Consensus 14 ~~~~C~iC~~---~~~~p~~-~~CgH~fC~~Ci~~~~~~--~~~~CP~--Cr~~~~~~~~~~~~~~~~~n~~l~~~i~~~ 85 (115)
T 3l11_A 14 SECQCGICME---ILVEPVT-LPCNHTLCKPCFQSTVEK--ASLCCPF--CRRRVSSWTRYHTRRNSLVNVELWTIIQKH 85 (115)
T ss_dssp HHHBCTTTCS---BCSSCEE-CTTSCEECHHHHCCCCCT--TTSBCTT--TCCBCHHHHHHHHHTTCCBCHHHHHHHHHH
T ss_pred CCCCCccCCc---ccCceeE-cCCCCHHhHHHHHHHHhH--CcCCCCC--CCcccCccccccccccchhhHHHHHHHHHH
Confidence 3688999997 7899999 799999999999999972 4578999 9998763 7788899998888876
Q ss_pred H
Q 029888 162 R 162 (186)
Q Consensus 162 r 162 (186)
.
T Consensus 86 ~ 86 (115)
T 3l11_A 86 Y 86 (115)
T ss_dssp S
T ss_pred C
Confidence 4
No 30
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.15 E-value=3.1e-11 Score=79.85 Aligned_cols=45 Identities=24% Similarity=0.601 Sum_probs=38.9
Q ss_pred ceeeccCcCCCCccccCCccccCCCccccHHHHHHHHHhcCCCCCCCCCCC
Q 029888 89 LNISCPLSGKPITELAEPVRSVECKHIYEKNAIQAYIKSKNANARCPVAGC 139 (186)
Q Consensus 89 ~~l~CPI~~~~~~~l~dPV~s~~CgH~fck~~I~~~l~~~~~~~~CPv~GC 139 (186)
..+.||||+. .|.+||. +.|||+||+.||..|+...++...||+ |
T Consensus 19 ~~~~C~IC~~---~~~~p~~-~~CgH~fC~~Ci~~~~~~~~~~~~CP~--C 63 (63)
T 2ysj_A 19 EEVICPICLD---ILQKPVT-IDCGHNFCLKCITQIGETSCGFFKCPL--C 63 (63)
T ss_dssp CCCBCTTTCS---BCSSCEE-CTTSSEECHHHHHHHHHHCSSCCCCSC--C
T ss_pred cCCCCCcCCc---hhCCeEE-eCCCCcchHHHHHHHHHcCCCCCcCcC--C
Confidence 3688999997 7899999 799999999999999984345678998 7
No 31
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.13 E-value=3.1e-11 Score=92.14 Aligned_cols=47 Identities=21% Similarity=0.680 Sum_probs=40.8
Q ss_pred eeeccCcCCCCccccCCccccCCCccccHHHHHHHHHhcCCCCCCCCCCCCCCccC
Q 029888 90 NISCPLSGKPITELAEPVRSVECKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQV 145 (186)
Q Consensus 90 ~l~CPI~~~~~~~l~dPV~s~~CgH~fck~~I~~~l~~~~~~~~CPv~GC~~~l~~ 145 (186)
.+.||||+. .|.+||. +.|||+||+.||..|+. ....||+ |+..+..
T Consensus 53 ~~~C~iC~~---~~~~~~~-~~CgH~fc~~Ci~~~~~---~~~~CP~--Cr~~~~~ 99 (138)
T 4ayc_A 53 ELQCIICSE---YFIEAVT-LNCAHSFCSYCINEWMK---RKIECPI--CRKDIKS 99 (138)
T ss_dssp HSBCTTTCS---BCSSEEE-ETTSCEEEHHHHHHHTT---TCSBCTT--TCCBCCC
T ss_pred cCCCcccCc---ccCCceE-CCCCCCccHHHHHHHHH---cCCcCCC--CCCcCCC
Confidence 467999997 7799998 89999999999999998 3467999 9988754
No 32
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=99.13 E-value=2.3e-11 Score=95.57 Aligned_cols=66 Identities=26% Similarity=0.415 Sum_probs=57.7
Q ss_pred ceeeccCcCCCCccccCCccccCCCccccHHHHHHHHHhcCCCCCCCCCCCCCCccCCCCccCHHHHHHHHHHH
Q 029888 89 LNISCPLSGKPITELAEPVRSVECKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQVSKVVCDSLLLVDIDEMR 162 (186)
Q Consensus 89 ~~l~CPI~~~~~~~l~dPV~s~~CgH~fck~~I~~~l~~~~~~~~CPv~GC~~~l~~~~L~~d~~L~~~I~~~r 162 (186)
..+.||||+. +|.+||. +.|||+||+.||..|+.. +...||+ |+..+...++.++..+.+.|..++
T Consensus 17 ~~~~C~IC~~---~~~~pv~-~~CgH~fC~~Ci~~~~~~--~~~~CP~--Cr~~~~~~~~~~~~~~~~~i~~l~ 82 (170)
T 3hcs_A 17 SKYECPICLM---ALREAVQ-TPCGHRFCKACIIKSIRD--AGHKCPV--DNEILLENQLFPDNFAKREILSLM 82 (170)
T ss_dssp GGGBCTTTCS---BCSSEEE-CTTSCEEEHHHHHHHHHH--HCSBCTT--TCCBCCGGGCEECHHHHHHHHTSE
T ss_pred CCCCCCCCCh---hhcCcEE-CCCCCHHHHHHHHHHHHh--CCCCCCC--CccCcchhhhhhhHHHHHHHhhcc
Confidence 4789999997 7899999 899999999999999984 2348999 999999999999998888887643
No 33
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.12 E-value=4.3e-11 Score=88.43 Aligned_cols=64 Identities=25% Similarity=0.484 Sum_probs=52.3
Q ss_pred eeeccCcCCCCccccCCccccCCCccccHHHHHHHHHhcCCCCCCCCCCCCCCccCCCCc-cCHHHHHHHHHH
Q 029888 90 NISCPLSGKPITELAEPVRSVECKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQVSKVV-CDSLLLVDIDEM 161 (186)
Q Consensus 90 ~l~CPI~~~~~~~l~dPV~s~~CgH~fck~~I~~~l~~~~~~~~CPv~GC~~~l~~~~L~-~d~~L~~~I~~~ 161 (186)
.+.||||+. .|.+||. +.|||+||+.||..|+.. ....||+ |+..+...++. ++..+...+..+
T Consensus 23 ~~~C~IC~~---~~~~p~~-~~CgH~fC~~Ci~~~~~~--~~~~CP~--Cr~~~~~~~~~~~~~~l~~~i~~l 87 (116)
T 1rmd_A 23 SISCQICEH---ILADPVE-TSCKHLFCRICILRCLKV--MGSYCPS--CRYPCFPTDLESPVKSFLNILNSL 87 (116)
T ss_dssp HTBCTTTCS---BCSSEEE-CTTSCEEEHHHHHHHHHH--TCSBCTT--TCCBCCGGGCBCCCHHHHHHHHHC
T ss_pred CCCCCCCCc---HhcCcEE-cCCCCcccHHHHHHHHhH--CcCcCCC--CCCCCCHhhccccHHHHHHHHHHh
Confidence 688999997 7899999 899999999999999984 3468999 99999887765 455555655544
No 34
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.11 E-value=6e-12 Score=97.13 Aligned_cols=66 Identities=17% Similarity=0.370 Sum_probs=54.3
Q ss_pred ceeeccCcCCCCccccCCccccCCCccccHHHHHHHHHhcCCCCCCCCCCCCCCc---------cCCCCccCHHHHHHHH
Q 029888 89 LNISCPLSGKPITELAEPVRSVECKHIYEKNAIQAYIKSKNANARCPVAGCPRKL---------QVSKVVCDSLLLVDID 159 (186)
Q Consensus 89 ~~l~CPI~~~~~~~l~dPV~s~~CgH~fck~~I~~~l~~~~~~~~CPv~GC~~~l---------~~~~L~~d~~L~~~I~ 159 (186)
..+.||||+. +|.+||+ +.|||+||+.||..|+.. +...||+ |+..+ ....+.+|..+.+.|.
T Consensus 30 ~~~~C~IC~~---~~~~pv~-~~CgH~FC~~Ci~~~~~~--~~~~CP~--Cr~~~~~~~~~~~l~~~~~~~d~~~~~~i~ 101 (141)
T 3knv_A 30 AKYLCSACRN---VLRRPFQ-AQCGHRYCSFCLASILSS--GPQNCAA--CVHEGIYEEGISILESSSAFPDNAARREVE 101 (141)
T ss_dssp GGGBCTTTCS---BCSSEEE-CTTSCEEEHHHHHHHGGG--SCEECHH--HHHTTCCCTTTTEECGGGCEECHHHHHHHH
T ss_pred cCcCCCCCCh---hhcCcEE-CCCCCccCHHHHHHHHhc--CCCCCCC--CCCcccccccccccchhhhcccHHHHHHHc
Confidence 4789999996 7899999 899999999999999983 4468999 98754 2446779998888887
Q ss_pred HHH
Q 029888 160 EMR 162 (186)
Q Consensus 160 ~~r 162 (186)
.++
T Consensus 102 ~L~ 104 (141)
T 3knv_A 102 SLP 104 (141)
T ss_dssp TSE
T ss_pred ccc
Confidence 653
No 35
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.10 E-value=4.5e-11 Score=79.62 Aligned_cols=56 Identities=20% Similarity=0.420 Sum_probs=45.4
Q ss_pred eeeccCcCCCCccccCCcc---ccCCCccccHHHHHHHHHhcCCCCCCCCCCCCCCccCCCCccC
Q 029888 90 NISCPLSGKPITELAEPVR---SVECKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQVSKVVCD 151 (186)
Q Consensus 90 ~l~CPI~~~~~~~l~dPV~---s~~CgH~fck~~I~~~l~~~~~~~~CPv~GC~~~l~~~~L~~d 151 (186)
.+.||||+. ..|.+|+. .+.|||+||+.||.+|+.. +...||+ |++.+...++.+.
T Consensus 3 ~~~C~IC~~--~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~--~~~~CP~--Cr~~~~~~~~~~~ 61 (65)
T 1g25_A 3 DQGCPRCKT--TKYRNPSLKLMVNVCGHTLCESCVDLLFVR--GAGNCPE--CGTPLRKSNFRVQ 61 (65)
T ss_dssp TTCCSTTTT--HHHHCSSCCEEECTTCCCEEHHHHHHHHHT--TSSSCTT--TCCCCSSCCCEEE
T ss_pred CCcCCcCCC--CccCCCccCeecCCCCCHhHHHHHHHHHHc--CCCcCCC--CCCccccccceee
Confidence 467999995 15788952 3789999999999999873 4578999 9999998887654
No 36
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.06 E-value=1.4e-10 Score=80.91 Aligned_cols=52 Identities=21% Similarity=0.618 Sum_probs=43.4
Q ss_pred eeeccCcCCCCccccC----CccccCCCccccHHHHHHHHHhcCCCCCCCCCCCCCCccCCC
Q 029888 90 NISCPLSGKPITELAE----PVRSVECKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQVSK 147 (186)
Q Consensus 90 ~l~CPI~~~~~~~l~d----PV~s~~CgH~fck~~I~~~l~~~~~~~~CPv~GC~~~l~~~~ 147 (186)
.+.||||+. .|.+ |+. +.|||+||+.||..|+....+...||+ |+..+...+
T Consensus 15 ~~~C~IC~~---~~~~~~~~~~~-~~CgH~fC~~Ci~~~~~~~~~~~~CP~--Cr~~~~~~~ 70 (88)
T 2ct2_A 15 VLECPICME---SFTEEQLRPKL-LHCGHTICRQCLEKLLASSINGVRCPF--CSKITRITS 70 (88)
T ss_dssp CCBCTTTCC---BCCTTSSCEEE-CSSSCEEEHHHHHHHHHHCSSCBCCTT--TCCCBCCSS
T ss_pred CCCCccCCc---cccccCCCeEE-CCCCChhhHHHHHHHHHcCCCCcCCCC--CCCcccchh
Confidence 578999997 6687 988 799999999999999985334678999 999876553
No 37
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.04 E-value=7.5e-11 Score=79.30 Aligned_cols=53 Identities=25% Similarity=0.587 Sum_probs=44.9
Q ss_pred ceeeccCcCCCCccccCC-------ccccCCCccccHHHHHHHHHhcCCCCCCCCCCCCCCccCCCCcc
Q 029888 89 LNISCPLSGKPITELAEP-------VRSVECKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQVSKVVC 150 (186)
Q Consensus 89 ~~l~CPI~~~~~~~l~dP-------V~s~~CgH~fck~~I~~~l~~~~~~~~CPv~GC~~~l~~~~L~~ 150 (186)
..+.||||+. .|.+| +. +.|||+||+.||..|+.. . ..||+ |+..+...++.+
T Consensus 9 ~~~~C~IC~~---~~~~~~~~~~~~~~-~~CgH~fc~~Ci~~~~~~-~--~~CP~--Cr~~~~~~~~~~ 68 (71)
T 3ng2_A 9 GTVSCPICMD---GYSEIVQNGRLIVS-TECGHVFCSQCLRDSLKN-A--NTCPT--CRKKINHKRYHP 68 (71)
T ss_dssp TCCBCTTTCC---BHHHHHTTTCCEEE-CTTSCEEEHHHHHHHHHH-C--SBCTT--TCCBCCCCSCCC
T ss_pred CCCCCcccCh---hhhccccccCCeEe-CCCCChHhHHHHHHHHHc-C--CCCCC--CCCccChhheee
Confidence 3678999997 67888 55 899999999999999983 2 58999 999998887765
No 38
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.03 E-value=1.5e-10 Score=74.79 Aligned_cols=44 Identities=34% Similarity=0.685 Sum_probs=37.8
Q ss_pred eeeccCcCCCCccccCCccccCCCccccHHHHHHHHHhcCCCCCCCCCCC
Q 029888 90 NISCPLSGKPITELAEPVRSVECKHIYEKNAIQAYIKSKNANARCPVAGC 139 (186)
Q Consensus 90 ~l~CPI~~~~~~~l~dPV~s~~CgH~fck~~I~~~l~~~~~~~~CPv~GC 139 (186)
.+.||||+. .|.+|+. +.|||+||+.||..|+....+...||+ |
T Consensus 15 ~~~C~IC~~---~~~~p~~-~~CgH~fC~~Ci~~~~~~~~~~~~CP~--C 58 (58)
T 2ecj_A 15 EASCSVCLE---YLKEPVI-IECGHNFCKACITRWWEDLERDFPCPV--C 58 (58)
T ss_dssp CCBCSSSCC---BCSSCCC-CSSCCCCCHHHHHHHTTSSCCSCCCSC--C
T ss_pred CCCCccCCc---ccCccEe-CCCCCccCHHHHHHHHHhcCCCCCCCC--C
Confidence 678999997 7799999 899999999999999863235678998 7
No 39
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=99.01 E-value=1.6e-10 Score=101.59 Aligned_cols=78 Identities=26% Similarity=0.556 Sum_probs=62.8
Q ss_pred CCCcceEEeccCCccceeeccCcCCCCccccCCccccCCCcc--ccHHHHHHHHHhcCCCCCCCCCCCCCCccCCCCccC
Q 029888 74 EEQEDIVMTSTQSNILNISCPLSGKPITELAEPVRSVECKHI--YEKNAIQAYIKSKNANARCPVAGCPRKLQVSKVVCD 151 (186)
Q Consensus 74 d~ddDi~i~~~~~~~~~l~CPI~~~~~~~l~dPV~s~~CgH~--fck~~I~~~l~~~~~~~~CPv~GC~~~l~~~~L~~d 151 (186)
++|+||+++ ..+++|+|||++. .|+.|+++..|.|. |+...+..+.. ..+.+.||+ |++.+...+|..|
T Consensus 202 d~DddI~~~---~~~vSL~CPlS~~---ri~~P~Rg~~C~HlqCFDl~sfL~~~~-~~~~W~CPi--C~k~~~~~dL~ID 272 (360)
T 4fo9_A 202 DPDSEIATT---SLRVSLMCPLGKM---RLTIPCRAVTCTHLQCFDAALYLQMNE-KKPTWICPV--CDKKAAYESLILD 272 (360)
T ss_dssp --------C---CEEEESBCTTTCS---BCSSEEEETTCCCCCCEEHHHHHHHHH-HSCCCBCTT--TCSBCCGGGEEEB
T ss_pred CCccceeee---eeEEeeeCCCccc---eeccCCcCCCCCCCccCCHHHHHHHHh-hCCCeECCC--CCcccCHHHeEEc
Confidence 457778776 3679999999997 78999999999999 99999999887 478899999 9999999999999
Q ss_pred HHHHHHHHH
Q 029888 152 SLLLVDIDE 160 (186)
Q Consensus 152 ~~L~~~I~~ 160 (186)
..+...+..
T Consensus 273 ~~~~~IL~~ 281 (360)
T 4fo9_A 273 GLFMEILND 281 (360)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHHh
Confidence 998887764
No 40
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.00 E-value=4.6e-11 Score=81.04 Aligned_cols=49 Identities=18% Similarity=0.446 Sum_probs=41.8
Q ss_pred eeeccCcCCCCccccCCccccCCCccccHHHHHHHHHhcCCCCCCCCCCCCCCccCCC
Q 029888 90 NISCPLSGKPITELAEPVRSVECKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQVSK 147 (186)
Q Consensus 90 ~l~CPI~~~~~~~l~dPV~s~~CgH~fck~~I~~~l~~~~~~~~CPv~GC~~~l~~~~ 147 (186)
.+.||||+. .|.+||. +.|||+||+.||..|+. ....||+ |+..+...+
T Consensus 15 ~~~C~IC~~---~~~~~~~-~~CgH~fC~~Ci~~~~~---~~~~CP~--Cr~~~~~~~ 63 (71)
T 2d8t_A 15 VPECAICLQ---TCVHPVS-LPCKHVFCYLCVKGASW---LGKRCAL--CRQEIPEDF 63 (71)
T ss_dssp CCBCSSSSS---BCSSEEE-ETTTEEEEHHHHHHCTT---CSSBCSS--SCCBCCHHH
T ss_pred CCCCccCCc---ccCCCEE-ccCCCHHHHHHHHHHHH---CCCcCcC--cCchhCHhh
Confidence 578999997 7899998 78999999999999988 2368999 998876543
No 41
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=98.99 E-value=1e-10 Score=76.85 Aligned_cols=52 Identities=25% Similarity=0.609 Sum_probs=43.8
Q ss_pred eeeccCcCCCCccccCC-------ccccCCCccccHHHHHHHHHhcCCCCCCCCCCCCCCccCCCCcc
Q 029888 90 NISCPLSGKPITELAEP-------VRSVECKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQVSKVVC 150 (186)
Q Consensus 90 ~l~CPI~~~~~~~l~dP-------V~s~~CgH~fck~~I~~~l~~~~~~~~CPv~GC~~~l~~~~L~~ 150 (186)
.+.||||+. .|.+| +. +.|||+||+.||..|+.. ...||+ |+..+...++.+
T Consensus 3 ~~~C~IC~~---~~~~~~~~~~~~~~-~~CgH~fc~~Ci~~~~~~---~~~CP~--Cr~~~~~~~~~~ 61 (64)
T 2xeu_A 3 MVSCPICMD---GYSEIVQNGRLIVS-TECGHVFCSQCLRDSLKN---ANTCPT--CRKKINHKRYHP 61 (64)
T ss_dssp CCBCTTTCC---BHHHHHHTTCCEEE-ETTSCEEEHHHHHHHHHH---CSBCTT--TCCBCTTTCEEE
T ss_pred CCCCCccCh---hhhCccccCCCEEe-CCCCCchhHHHHHHHHHc---CCCCCC--CCccCCccceee
Confidence 578999997 67877 45 799999999999999983 458999 999988877654
No 42
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.91 E-value=1e-09 Score=76.62 Aligned_cols=54 Identities=19% Similarity=0.378 Sum_probs=41.2
Q ss_pred ceeeccCcCCCCccccCCccccC--CCccccHHHHHHHHHhcCCCCCCCCCCCCCCccCCCC
Q 029888 89 LNISCPLSGKPITELAEPVRSVE--CKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQVSKV 148 (186)
Q Consensus 89 ~~l~CPI~~~~~~~l~dPV~s~~--CgH~fck~~I~~~l~~~~~~~~CPv~GC~~~l~~~~L 148 (186)
..+.||||+.|+ .+.+|+. .. |||+||+.||..++.. +...||+ |++.+....+
T Consensus 10 ~~~~CpICle~~-~~~d~~~-~p~~CGH~fC~~Cl~~~~~~--~~~~CP~--CR~~~~~~~~ 65 (78)
T 1e4u_A 10 DPVECPLCMEPL-EIDDINF-FPCTCGYQICRFCWHRIRTD--ENGLCPA--CRKPYPEDPA 65 (78)
T ss_dssp CCCBCTTTCCBC-CTTTTTC-CSSTTSCCCCHHHHHHHTTS--SCSBCTT--TCCBCSSCSS
T ss_pred cCCcCCccCccC-ccccccc-cccCCCCCcCHHHHHHHHhc--CCCCCCC--CCCccCCCch
Confidence 357899999864 3344443 33 9999999999999872 5678999 9998876655
No 43
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.90 E-value=4.8e-10 Score=74.68 Aligned_cols=47 Identities=28% Similarity=0.717 Sum_probs=39.5
Q ss_pred eeeccCcCCCCccccCC-------ccccCCCccccHHHHHHHHHhcCCCCCCCCCCCCCCccC
Q 029888 90 NISCPLSGKPITELAEP-------VRSVECKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQV 145 (186)
Q Consensus 90 ~l~CPI~~~~~~~l~dP-------V~s~~CgH~fck~~I~~~l~~~~~~~~CPv~GC~~~l~~ 145 (186)
.+.||||+. .|.+| +. +.|||+||+.||..|+.. ...||+ |+..+..
T Consensus 15 ~~~C~IC~~---~~~~~~~~~~~~~~-~~CgH~fc~~Ci~~~~~~---~~~CP~--Cr~~~~~ 68 (69)
T 2ea6_A 15 TVSCPICMD---GYSEIVQNGRLIVS-TECGHVFCSQCLRDSLKN---ANTCPT--CRKKINH 68 (69)
T ss_dssp CCCCTTTCC---CHHHHTTTTCCEEE-CSSSCEEEHHHHHHHHHH---CSSCTT--TCCCCCC
T ss_pred CCCCcccCc---cccccccccCCeEe-CCCCChhcHHHHHHHHHc---CCCCCC--CCCccCc
Confidence 578999997 67877 55 799999999999999983 358999 9987753
No 44
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.89 E-value=4.2e-10 Score=80.37 Aligned_cols=55 Identities=24% Similarity=0.514 Sum_probs=42.7
Q ss_pred ceeeccCcCCCCccccCCccc--cCCCccccHHHHHHHHHh---cC--CCCCCCCCCCCCC--ccCC
Q 029888 89 LNISCPLSGKPITELAEPVRS--VECKHIYEKNAIQAYIKS---KN--ANARCPVAGCPRK--LQVS 146 (186)
Q Consensus 89 ~~l~CPI~~~~~~~l~dPV~s--~~CgH~fck~~I~~~l~~---~~--~~~~CPv~GC~~~--l~~~ 146 (186)
..+.||||+. .+..|+.- ..|||+||+.||..||.. .+ ....||..||+.. +...
T Consensus 4 ~~~~C~IC~~---~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~~ 67 (94)
T 1wim_A 4 GSSGCKLCLG---EYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQEN 67 (94)
T ss_dssp SBCCCSSSCC---CCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECHH
T ss_pred CCcCCcccCc---ccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCHH
Confidence 3688999997 56788652 269999999999999974 12 2468999999987 5543
No 45
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.87 E-value=8.1e-10 Score=75.79 Aligned_cols=55 Identities=22% Similarity=0.664 Sum_probs=44.1
Q ss_pred eeeccCcCCCCccccCCc--cccCCCccccHHHHHHHHHhcCCCCCCCCCCCCCCccCCCCccCH
Q 029888 90 NISCPLSGKPITELAEPV--RSVECKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQVSKVVCDS 152 (186)
Q Consensus 90 ~l~CPI~~~~~~~l~dPV--~s~~CgH~fck~~I~~~l~~~~~~~~CPv~GC~~~l~~~~L~~d~ 152 (186)
.+.||||+. .|.+|. ..+.|||+||+.||..|+.. ...||+ |+..+...++.+++
T Consensus 15 ~~~C~IC~~---~~~~~~~~~~~~C~H~fc~~Ci~~~~~~---~~~CP~--Cr~~~~~~~~~~~~ 71 (78)
T 2ect_A 15 GLECPVCKE---DYALGESVRQLPCNHLFHDSCIVPWLEQ---HDSCPV--CRKSLTGQNTATNP 71 (78)
T ss_dssp SCCCTTTTS---CCCTTSCEEECTTSCEEETTTTHHHHTT---TCSCTT--TCCCCCCSCSCCCC
T ss_pred CCCCeeCCc---cccCCCCEEEeCCCCeecHHHHHHHHHc---CCcCcC--cCCccCCcccCCCC
Confidence 577999997 556553 32589999999999999982 368999 99999888877653
No 46
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.83 E-value=1e-09 Score=81.50 Aligned_cols=52 Identities=25% Similarity=0.627 Sum_probs=43.9
Q ss_pred eeeccCcCCCCccccCC-------ccccCCCccccHHHHHHHHHhcCCCCCCCCCCCCCCccCCCCcc
Q 029888 90 NISCPLSGKPITELAEP-------VRSVECKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQVSKVVC 150 (186)
Q Consensus 90 ~l~CPI~~~~~~~l~dP-------V~s~~CgH~fck~~I~~~l~~~~~~~~CPv~GC~~~l~~~~L~~ 150 (186)
.+.||||+. .|.+| +. +.|||+||+.||.+|+.. ...||+ |++.+....+.+
T Consensus 7 ~~~C~IC~~---~~~~~~~~~~~~~~-~~CgH~fc~~Ci~~~~~~---~~~CP~--Cr~~~~~~~l~~ 65 (133)
T 4ap4_A 7 TVSCPICMD---GYSEIVQNGRLIVS-TECGHVFCSQCLRDSLKN---ANTCPT--CRKKINHKRYHP 65 (133)
T ss_dssp SCBCTTTCC---BHHHHHHTTCCEEE-ETTCCEEEHHHHHHHHTT---CSBCTT--TCCBCTTTCEEE
T ss_pred CCCCcccCh---hhhCccccccCeEe-cCCCChhhHHHHHHHHHh---CCCCCC--CCCcCccccccc
Confidence 688999997 77888 66 899999999999999982 358999 999887766544
No 47
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=98.82 E-value=1.7e-09 Score=72.14 Aligned_cols=47 Identities=21% Similarity=0.557 Sum_probs=39.4
Q ss_pred eeeccCcCCCCccccCCccccCCCccccHHHHHHHHHhcCCCCCCCCCCCCCCcc
Q 029888 90 NISCPLSGKPITELAEPVRSVECKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQ 144 (186)
Q Consensus 90 ~l~CPI~~~~~~~l~dPV~s~~CgH~fck~~I~~~l~~~~~~~~CPv~GC~~~l~ 144 (186)
...||||+. .+.+|+....|||+||+.||..|+.. ...||+ |+..+.
T Consensus 5 ~~~C~IC~~---~~~~~~~~~~C~H~fc~~Ci~~~~~~---~~~CP~--Cr~~~~ 51 (68)
T 1chc_A 5 AERCPICLE---DPSNYSMALPCLHAFCYVCITRWIRQ---NPTCPL--CKVPVE 51 (68)
T ss_dssp CCCCSSCCS---CCCSCEEETTTTEEESTTHHHHHHHH---SCSTTT--TCCCCC
T ss_pred CCCCeeCCc---cccCCcEecCCCCeeHHHHHHHHHhC---cCcCcC--CChhhH
Confidence 567999997 67898554899999999999999983 258999 998765
No 48
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=98.76 E-value=3.7e-09 Score=67.54 Aligned_cols=48 Identities=19% Similarity=0.558 Sum_probs=37.7
Q ss_pred ceeeccCcCCCCccccC---CccccCCCccccHHHHHHHHHhcCCCCCCCCCCCCCCcc
Q 029888 89 LNISCPLSGKPITELAE---PVRSVECKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQ 144 (186)
Q Consensus 89 ~~l~CPI~~~~~~~l~d---PV~s~~CgH~fck~~I~~~l~~~~~~~~CPv~GC~~~l~ 144 (186)
....||||+. .|.+ ++..+.|||+|++.||..|+.. . ..||+ |+..+.
T Consensus 4 ~~~~C~IC~~---~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~--~~CP~--Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLE---DIHTSRVVAHVLPCGHLLHRTCYEEMLKE-G--YRCPL--CSGPSS 54 (55)
T ss_dssp CCCSCTTTCC---CCCTTTSCEEECTTSCEEETTHHHHHHHH-T--CCCTT--SCCSSC
T ss_pred CCCcCcccCh---hhcCCCcCeEecCCCCcccHHHHHHHHHc-C--CcCCC--CCCcCC
Confidence 3678999997 4444 3443889999999999999994 2 78999 987663
No 49
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.74 E-value=2.1e-09 Score=69.91 Aligned_cols=46 Identities=20% Similarity=0.478 Sum_probs=38.3
Q ss_pred ceeeccCcCCCCccccCCccccCCCccccHHHHHHHHHhcCCCCCCCCCCCCCCccCC
Q 029888 89 LNISCPLSGKPITELAEPVRSVECKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQVS 146 (186)
Q Consensus 89 ~~l~CPI~~~~~~~l~dPV~s~~CgH~fck~~I~~~l~~~~~~~~CPv~GC~~~l~~~ 146 (186)
..+.||||+. .|.+|+. +.|||+||+.||.. ....||+ |++.+...
T Consensus 5 ~~~~C~IC~~---~~~~p~~-l~CgH~fC~~Ci~~------~~~~CP~--Cr~~~~~~ 50 (56)
T 1bor_A 5 QFLRCQQCQA---EAKCPKL-LPCLHTLCSGCLEA------SGMQCPI--CQAPWPLG 50 (56)
T ss_dssp CCSSCSSSCS---SCBCCSC-STTSCCSBTTTCSS------SSSSCSS--CCSSSSCC
T ss_pred cCCCceEeCC---ccCCeEE-cCCCCcccHHHHcc------CCCCCCc--CCcEeecC
Confidence 3678999997 7799998 89999999999876 3468999 99877643
No 50
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=98.74 E-value=6.7e-09 Score=69.53 Aligned_cols=50 Identities=18% Similarity=0.594 Sum_probs=37.2
Q ss_pred eeeccCcCCCCccccCCccccCCCccccHHHHHHHHHhcCCCCCCCCCCCCCCccC
Q 029888 90 NISCPLSGKPITELAEPVRSVECKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQV 145 (186)
Q Consensus 90 ~l~CPI~~~~~~~l~dPV~s~~CgH~fck~~I~~~l~~~~~~~~CPv~GC~~~l~~ 145 (186)
...||||+..|..-..++. +.|||+|+..||..|+.. . ..||+ |+..+..
T Consensus 14 ~~~C~IC~~~~~~~~~~~~-~~C~H~fc~~Ci~~~~~~-~--~~CP~--Cr~~~~~ 63 (69)
T 2kiz_A 14 EEKCTICLSILEEGEDVRR-LPCMHLFHQVCVDQWLIT-N--KKCPI--CRVDIEA 63 (69)
T ss_dssp CCSBTTTTBCCCSSSCEEE-CTTSCEEEHHHHHHHHHH-C--SBCTT--TCSBSCS
T ss_pred CCCCeeCCccccCCCcEEE-eCCCCHHHHHHHHHHHHc-C--CCCcC--cCccccC
Confidence 5679999974311123444 789999999999999983 2 46999 9987754
No 51
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.68 E-value=1.5e-08 Score=68.66 Aligned_cols=47 Identities=15% Similarity=0.490 Sum_probs=37.7
Q ss_pred eeeccCcCCCCccccCCccc--cCCCccccHHHHHHHHHhcCCCCCCCCCCCCCCcc
Q 029888 90 NISCPLSGKPITELAEPVRS--VECKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQ 144 (186)
Q Consensus 90 ~l~CPI~~~~~~~l~dPV~s--~~CgH~fck~~I~~~l~~~~~~~~CPv~GC~~~l~ 144 (186)
...||||+. .|.+|... ..|||+|++.||..|+.. . ..||+ |+..+.
T Consensus 15 ~~~C~IC~~---~~~~~~~~~~~~C~H~f~~~Ci~~~~~~-~--~~CP~--Cr~~~~ 63 (74)
T 2ep4_A 15 HELCAVCLE---DFKPRDELGICPCKHAFHRKCLIKWLEV-R--KVCPL--CNMPVL 63 (74)
T ss_dssp SCBCSSSCC---BCCSSSCEEEETTTEEEEHHHHHHHHHH-C--SBCTT--TCCBCS
T ss_pred CCCCcCCCc---ccCCCCcEEEcCCCCEecHHHHHHHHHc-C--CcCCC--cCcccc
Confidence 567999997 56766541 389999999999999983 2 48999 998764
No 52
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=98.67 E-value=9.6e-09 Score=72.97 Aligned_cols=48 Identities=21% Similarity=0.665 Sum_probs=38.0
Q ss_pred ceeeccCcCCCCccccC---CccccCCCccccHHHHHHHHHhcCCCCCCCCCCCCCCccC
Q 029888 89 LNISCPLSGKPITELAE---PVRSVECKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQV 145 (186)
Q Consensus 89 ~~l~CPI~~~~~~~l~d---PV~s~~CgH~fck~~I~~~l~~~~~~~~CPv~GC~~~l~~ 145 (186)
....||||+. .|.. ++. +.|||+|+..||..|+. ....||+ |+..+..
T Consensus 39 ~~~~C~IC~~---~~~~~~~~~~-l~C~H~Fh~~Ci~~wl~---~~~~CP~--Cr~~~~~ 89 (91)
T 2l0b_A 39 QEMCCPICCS---EYVKGDVATE-LPCHHYFHKPCVSIWLQ---KSGTCPV--CRCMFPP 89 (91)
T ss_dssp SCSEETTTTE---ECCTTCEEEE-ETTTEEEEHHHHHHHHT---TTCBCTT--TCCBSSC
T ss_pred CCCCCcccCh---hhcCCCcEEe-cCCCChHHHHHHHHHHH---cCCcCcC--cCccCCC
Confidence 3678999996 4454 555 78999999999999998 2358999 9987653
No 53
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.67 E-value=1.5e-08 Score=74.15 Aligned_cols=50 Identities=20% Similarity=0.428 Sum_probs=38.7
Q ss_pred eeeccCcCCCCccccCCc-----------------cccCCCccccHHHHHHHHHhc--CCCCCCCCCCCCCCcc
Q 029888 90 NISCPLSGKPITELAEPV-----------------RSVECKHIYEKNAIQAYIKSK--NANARCPVAGCPRKLQ 144 (186)
Q Consensus 90 ~l~CPI~~~~~~~l~dPV-----------------~s~~CgH~fck~~I~~~l~~~--~~~~~CPv~GC~~~l~ 144 (186)
+..||||+. .|.+|+ ..+.|||+|+..||..|+... .....||+ |+..+.
T Consensus 25 ~~~C~ICl~---~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~--CR~~~~ 93 (114)
T 1v87_A 25 EEDCIICME---KLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPS--CKTIYG 93 (114)
T ss_dssp SCEETTTTE---ETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTT--TCCBSS
T ss_pred CCcCccCCh---hhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCC--CCCccC
Confidence 457999997 566664 136899999999999999631 24578999 998765
No 54
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.66 E-value=7.8e-09 Score=70.46 Aligned_cols=48 Identities=19% Similarity=0.568 Sum_probs=38.6
Q ss_pred eeeccCcCCCCccccCC--ccccCCCccccHHHHHHHHHhcCCCCCCCCCCCCCCccC
Q 029888 90 NISCPLSGKPITELAEP--VRSVECKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQV 145 (186)
Q Consensus 90 ~l~CPI~~~~~~~l~dP--V~s~~CgH~fck~~I~~~l~~~~~~~~CPv~GC~~~l~~ 145 (186)
...||||+. .|..+ +..+.|||+|+..||..|+.. ...||+ |+..+..
T Consensus 23 ~~~C~IC~~---~~~~~~~~~~l~C~H~fh~~Ci~~w~~~---~~~CP~--Cr~~~~~ 72 (75)
T 1x4j_A 23 QTLCVVCMC---DFESRQLLRVLPCNHEFHAKCVDKWLKA---NRTCPI--CRADSGP 72 (75)
T ss_dssp CCEETTTTE---ECCBTCEEEEETTTEEEETTHHHHHHHH---CSSCTT--TCCCCCC
T ss_pred CCCCeECCc---ccCCCCeEEEECCCCHhHHHHHHHHHHc---CCcCcC--cCCcCCC
Confidence 567999997 55666 333789999999999999983 258999 9987754
No 55
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.66 E-value=2.9e-09 Score=71.50 Aligned_cols=48 Identities=17% Similarity=0.492 Sum_probs=39.9
Q ss_pred eeeccCcCCCCccccCCccccCCCccccHHHHHHHHHhcCCCCCCCCCCCCCCccCCC
Q 029888 90 NISCPLSGKPITELAEPVRSVECKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQVSK 147 (186)
Q Consensus 90 ~l~CPI~~~~~~~l~dPV~s~~CgH~fck~~I~~~l~~~~~~~~CPv~GC~~~l~~~~ 147 (186)
.+.||||+. .+.+ +. +.|||+||+.||..|+. ....||+ |+..+...+
T Consensus 15 ~~~C~IC~~---~~~~-~~-~~CgH~fc~~Ci~~~~~---~~~~CP~--Cr~~~~~~~ 62 (70)
T 2ecn_A 15 EEECCICMD---GRAD-LI-LPCAHSFCQKCIDKWSD---RHRNCPI--CRLQMTGAN 62 (70)
T ss_dssp CCCCSSSCC---SCCS-EE-ETTTEEECHHHHHHSSC---CCSSCHH--HHHCTTCCC
T ss_pred CCCCeeCCc---CccC-cc-cCCCCcccHHHHHHHHH---CcCcCCC--cCCcccCCC
Confidence 578999997 5677 66 89999999999999987 4578999 998776544
No 56
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=98.65 E-value=1e-08 Score=65.59 Aligned_cols=47 Identities=15% Similarity=0.503 Sum_probs=36.7
Q ss_pred eeeccCcCCCCccccC---CccccCCCccccHHHHHHHHHhcCCCCCCCCCCCCCCcc
Q 029888 90 NISCPLSGKPITELAE---PVRSVECKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQ 144 (186)
Q Consensus 90 ~l~CPI~~~~~~~l~d---PV~s~~CgH~fck~~I~~~l~~~~~~~~CPv~GC~~~l~ 144 (186)
...||||+.. |.+ ++....|||+|++.||..|++ ....||+ |+..+.
T Consensus 5 ~~~C~IC~~~---~~~~~~~~~~~~C~H~f~~~Ci~~w~~---~~~~CP~--Cr~~~~ 54 (55)
T 1iym_A 5 GVECAVCLAE---LEDGEEARFLPRCGHGFHAECVDMWLG---SHSTCPL--CRLTVV 54 (55)
T ss_dssp SCCCTTTCCC---CCTTSCCEECSSSCCEECTTHHHHTTT---TCCSCSS--SCCCSC
T ss_pred CCcCccCCcc---ccCCCceEECCCCCCcccHHHHHHHHH---cCCcCcC--CCCEeE
Confidence 4679999974 455 666234999999999999998 2468999 987653
No 57
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.56 E-value=1.2e-08 Score=75.65 Aligned_cols=52 Identities=25% Similarity=0.627 Sum_probs=43.8
Q ss_pred eeeccCcCCCCccccCC-------ccccCCCccccHHHHHHHHHhcCCCCCCCCCCCCCCccCCCCcc
Q 029888 90 NISCPLSGKPITELAEP-------VRSVECKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQVSKVVC 150 (186)
Q Consensus 90 ~l~CPI~~~~~~~l~dP-------V~s~~CgH~fck~~I~~~l~~~~~~~~CPv~GC~~~l~~~~L~~ 150 (186)
.+.||||+. .|.+| +. ..|||+||..||..|+.. ...||+ |+..+...++.+
T Consensus 72 ~~~C~iC~~---~~~~~~~~~~~~~~-~~CgH~fc~~Ci~~~~~~---~~~CP~--Cr~~~~~~~~~~ 130 (133)
T 4ap4_A 72 TVSCPICMD---GYSEIVQNGRLIVS-TECGHVFCSQCLRDSLKN---ANTCPT--CRKKINHKRYHP 130 (133)
T ss_dssp SCBCTTTCC---BHHHHHHTTCCEEE-ETTSBEEEHHHHHHHHHH---CSBCTT--TCCBCCGGGEEE
T ss_pred CCCCCCCCC---ccccccccCcceEe-CCCCChhhHHHHHHHHHc---CCCCCC--CCCcCChhccee
Confidence 678999997 66777 55 789999999999999983 358999 999998877654
No 58
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=98.53 E-value=5.1e-08 Score=94.61 Aligned_cols=70 Identities=20% Similarity=0.233 Sum_probs=61.1
Q ss_pred eeeccCcCCCCccccCCccccCCC-ccccHHHHHHHHHhcCCCCCCCCCCCCCCccCCCCccCHHHHHHHHHHHhcCccc
Q 029888 90 NISCPLSGKPITELAEPVRSVECK-HIYEKNAIQAYIKSKNANARCPVAGCPRKLQVSKVVCDSLLLVDIDEMRRTSKET 168 (186)
Q Consensus 90 ~l~CPI~~~~~~~l~dPV~s~~Cg-H~fck~~I~~~l~~~~~~~~CPv~GC~~~l~~~~L~~d~~L~~~I~~~r~~~~~~ 168 (186)
.+.|||++. +|+|||. +..| ++|+|.+|++|+.. ...||+ .+..|+..+|.||..|+..|++|....++.
T Consensus 891 ~F~cPIs~~---lM~DPVi-lpsG~~TydR~~I~~wl~~---~~tdP~--Tr~~L~~~~liPN~~Lk~~I~~w~~~~~~~ 961 (968)
T 3m62_A 891 EFLDPLMYT---IMKDPVI-LPASKMNIDRSTIKAHLLS---DSTDPF--NRMPLKLEDVTPNEELRQKILCFKKQKKEE 961 (968)
T ss_dssp GGBCTTTCS---BCSSEEE-CTTTCCEEEHHHHHHHHTT---CCBCTT--TCCBCCGGGCEECHHHHHHHHHHHHHHHTT
T ss_pred HhCCcchhh---HHhCCeE-cCCCCEEECHHHHHHHHhc---CCCCCC--CCCCCCcccccccHHHHHHHHHHHHHHHhh
Confidence 799999997 8999999 7787 69999999999983 358999 668899999999999999999998764443
No 59
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.47 E-value=8.2e-08 Score=85.26 Aligned_cols=49 Identities=14% Similarity=0.388 Sum_probs=42.0
Q ss_pred eeeccCcCCCCccccCCccccCCCccccHHHHHHHHHhcCCCCCCCCCCCCCCccCC
Q 029888 90 NISCPLSGKPITELAEPVRSVECKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQVS 146 (186)
Q Consensus 90 ~l~CPI~~~~~~~l~dPV~s~~CgH~fck~~I~~~l~~~~~~~~CPv~GC~~~l~~~ 146 (186)
...||||+. .+.+||. +.|||+||..||..|+.. ....||+ |+..+...
T Consensus 332 ~~~C~ICle---~~~~pv~-lpCGH~FC~~Ci~~wl~~--~~~~CP~--CR~~i~~~ 380 (389)
T 2y1n_A 332 FQLCKICAE---NDKDVKI-EPCGHLMCTSCLTSWQES--EGQGCPF--CRCEIKGT 380 (389)
T ss_dssp SSBCTTTSS---SBCCEEE-ETTCCEECHHHHHHHHHH--TCSBCTT--TCCBCCEE
T ss_pred CCCCCccCc---CCCCeEE-eCCCChhhHHHHHHHHhc--CCCCCCC--CCCccCCc
Confidence 378999997 6799998 899999999999999983 4568999 99877654
No 60
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.41 E-value=6.3e-08 Score=66.27 Aligned_cols=42 Identities=24% Similarity=0.460 Sum_probs=36.6
Q ss_pred eeeccCcCCCCccccCCccccCCCcc-ccHHHHHHHHHhcCCCCCCCCCCCCCCcc
Q 029888 90 NISCPLSGKPITELAEPVRSVECKHI-YEKNAIQAYIKSKNANARCPVAGCPRKLQ 144 (186)
Q Consensus 90 ~l~CPI~~~~~~~l~dPV~s~~CgH~-fck~~I~~~l~~~~~~~~CPv~GC~~~l~ 144 (186)
.+.||||+. .+.+||. ..|||+ ||+.|+..+ ..||+ |+..+.
T Consensus 24 ~~~C~iC~~---~~~~~~~-~pCgH~~~C~~C~~~~-------~~CP~--Cr~~i~ 66 (74)
T 4ic3_A 24 EKLCKICMD---RNIAIVF-VPCGHLVTCKQCAEAV-------DKCPM--CYTVIT 66 (74)
T ss_dssp HTBCTTTSS---SBCCEEE-ETTCCBCCCHHHHTTC-------SBCTT--TCCBCS
T ss_pred CCCCCCCCC---CCCCEEE-cCCCChhHHHHhhhcC-------ccCCC--cCcCcc
Confidence 578999997 7899998 899999 999998776 57999 998765
No 61
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.40 E-value=9.6e-08 Score=66.45 Aligned_cols=49 Identities=24% Similarity=0.595 Sum_probs=36.3
Q ss_pred eeeccCcCCCCccccC--------------CccccCCCccccHHHHHHHHHhcCCCCCCCCCCCCCCccCC
Q 029888 90 NISCPLSGKPITELAE--------------PVRSVECKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQVS 146 (186)
Q Consensus 90 ~l~CPI~~~~~~~l~d--------------PV~s~~CgH~fck~~I~~~l~~~~~~~~CPv~GC~~~l~~~ 146 (186)
...|+||+. .|.+ ++....|||+|.+.||.+|+.. ...||+ |+..+...
T Consensus 15 ~~~C~IC~~---~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~---~~~CP~--CR~~~~~~ 77 (81)
T 2ecl_A 15 CDTCAICRV---QVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQ---NNRCPL--CQQDWVVQ 77 (81)
T ss_dssp CSCBTTTTB---CTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTT---CCBCTT--TCCBCCEE
T ss_pred CCCCcccCh---hhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHh---CCCCCC--cCCCcchh
Confidence 345888886 3444 4443469999999999999983 258999 99877544
No 62
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.37 E-value=1.7e-07 Score=64.04 Aligned_cols=43 Identities=23% Similarity=0.442 Sum_probs=36.3
Q ss_pred eeeccCcCCCCccccCCccccCCCcc-ccHHHHHHHHHhcCCCCCCCCCCCCCCccC
Q 029888 90 NISCPLSGKPITELAEPVRSVECKHI-YEKNAIQAYIKSKNANARCPVAGCPRKLQV 145 (186)
Q Consensus 90 ~l~CPI~~~~~~~l~dPV~s~~CgH~-fck~~I~~~l~~~~~~~~CPv~GC~~~l~~ 145 (186)
.+.||||+. .+.+||. +.|||+ ||..|+.. ...||+ |+..+..
T Consensus 25 ~~~C~IC~~---~~~~~~~-~pCgH~~~C~~C~~~-------~~~CP~--Cr~~i~~ 68 (75)
T 2ecg_A 25 EKLCKICMD---RNIAIVF-VPCGHLVTCKQCAEA-------VDKCPM--CYTVITF 68 (75)
T ss_dssp HHSCSSSCS---SCCCBCC-SSSCCCCBCHHHHHH-------CSBCTT--TCCBCCC
T ss_pred CCCCCcCCC---CCCCEEE-ecCCCHHHHHHHhhC-------CCCCcc--CCceecC
Confidence 578999997 6899998 899999 99999853 257999 9987754
No 63
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.15 E-value=1.3e-06 Score=58.04 Aligned_cols=47 Identities=23% Similarity=0.450 Sum_probs=38.5
Q ss_pred ceeeccCcCCCCccccCCcccc--CCCcc-ccHHHHHHHHHhcCCCCCCCCCCCCCCcc
Q 029888 89 LNISCPLSGKPITELAEPVRSV--ECKHI-YEKNAIQAYIKSKNANARCPVAGCPRKLQ 144 (186)
Q Consensus 89 ~~l~CPI~~~~~~~l~dPV~s~--~CgH~-fck~~I~~~l~~~~~~~~CPv~GC~~~l~ 144 (186)
....|+||+. .+++++. . .|||. ||..|+..++.. ...||+ |++.+.
T Consensus 6 ~~~~C~IC~~---~~~~~~~-~~~pCgH~~~C~~C~~~~~~~---~~~CPi--CR~~i~ 55 (63)
T 2vje_B 6 LLKPCSLCEK---RPRDGNI-IHGRTGHLVTCFHCARRLKKA---GASCPI--CKKEIQ 55 (63)
T ss_dssp GGSBCTTTSS---SBSCEEE-EETTEEEEEECHHHHHHHHHT---TCBCTT--TCCBCC
T ss_pred cCCCCcccCC---cCCCeEE-EecCCCCHhHHHHHHHHHHHh---CCcCCC--cCchhh
Confidence 3567999996 5688876 5 89998 999999999872 368999 998764
No 64
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.15 E-value=1.2e-06 Score=58.32 Aligned_cols=46 Identities=22% Similarity=0.343 Sum_probs=38.4
Q ss_pred eeeccCcCCCCccccCCcccc--CCCcc-ccHHHHHHHHHhcCCCCCCCCCCCCCCcc
Q 029888 90 NISCPLSGKPITELAEPVRSV--ECKHI-YEKNAIQAYIKSKNANARCPVAGCPRKLQ 144 (186)
Q Consensus 90 ~l~CPI~~~~~~~l~dPV~s~--~CgH~-fck~~I~~~l~~~~~~~~CPv~GC~~~l~ 144 (186)
...|+||+. .+.+++. . .|||. ||..|+..++. ....||+ |++.+.
T Consensus 8 ~~~C~IC~~---~~~~~~~-~~~pCgH~~~C~~C~~~~~~---~~~~CPi--CR~~i~ 56 (64)
T 2vje_A 8 IEPCVICQG---RPKNGCI-VHGKTGHLMACFTCAKKLKK---RNKPCPV--CRQPIQ 56 (64)
T ss_dssp GSCCTTTSS---SCSCEEE-EETTEEEEEECHHHHHHHHH---TTCCCTT--TCCCCC
T ss_pred cCCCCcCCC---CCCCEEE-ECCCCCChhhHHHHHHHHHH---cCCcCCC--cCcchh
Confidence 567999997 6788886 4 89999 89999999987 2358999 998764
No 65
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=98.12 E-value=2.1e-06 Score=63.03 Aligned_cols=47 Identities=19% Similarity=0.456 Sum_probs=36.4
Q ss_pred eeeccCcCCCCccccCC-----------------ccccCCCccccHHHHHHHHHhcCCCCCCCCCCCCCCcc
Q 029888 90 NISCPLSGKPITELAEP-----------------VRSVECKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQ 144 (186)
Q Consensus 90 ~l~CPI~~~~~~~l~dP-----------------V~s~~CgH~fck~~I~~~l~~~~~~~~CPv~GC~~~l~ 144 (186)
.-.|+||+. .|.+| +....|||.|...||..||. ....||+ |+..+.
T Consensus 37 ~d~CaIC~~---~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~---~~~~CP~--Cr~~~~ 100 (106)
T 3dpl_R 37 VDNCAICRN---HIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLK---TRQVCPL--DNREWE 100 (106)
T ss_dssp SCCCSSSCS---CTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHT---TCSBCSS--SCSBCC
T ss_pred CCCCccCCh---hHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHH---cCCcCcC--CCCcce
Confidence 346999987 44554 44468999999999999998 2468999 998754
No 66
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=97.93 E-value=1.9e-06 Score=59.74 Aligned_cols=42 Identities=19% Similarity=0.479 Sum_probs=35.6
Q ss_pred eeeccCcCCCCccccCCccccCCCcc-ccHHHHHHHHHhcCCCCCCCCCCCCCCcc
Q 029888 90 NISCPLSGKPITELAEPVRSVECKHI-YEKNAIQAYIKSKNANARCPVAGCPRKLQ 144 (186)
Q Consensus 90 ~l~CPI~~~~~~~l~dPV~s~~CgH~-fck~~I~~~l~~~~~~~~CPv~GC~~~l~ 144 (186)
...|+||+. .+.+||. ..|||. ||..|+..+ ..||+ |+..+.
T Consensus 18 ~~~C~IC~~---~~~~~v~-~pCgH~~~C~~C~~~~-------~~CP~--Cr~~i~ 60 (79)
T 2yho_A 18 AMLCMVCCE---EEINSTF-CPCGHTVCCESCAAQL-------QSCPV--CRSRVE 60 (79)
T ss_dssp HTBCTTTSS---SBCCEEE-ETTCBCCBCHHHHTTC-------SBCTT--TCCBCC
T ss_pred CCEeEEeCc---ccCcEEE-ECCCCHHHHHHHHHhc-------CcCCC--CCchhh
Confidence 467999997 6799998 899999 999998754 37999 998765
No 67
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=97.85 E-value=2.1e-06 Score=75.11 Aligned_cols=42 Identities=17% Similarity=0.506 Sum_probs=36.6
Q ss_pred eeeccCcCCCCccccCCccccCCCcc-ccHHHHHHHHHhcCCCCCCCCCCCCCCcc
Q 029888 90 NISCPLSGKPITELAEPVRSVECKHI-YEKNAIQAYIKSKNANARCPVAGCPRKLQ 144 (186)
Q Consensus 90 ~l~CPI~~~~~~~l~dPV~s~~CgH~-fck~~I~~~l~~~~~~~~CPv~GC~~~l~ 144 (186)
.+.||||+. .+.+||. +.|||+ ||+.|+..+ ..||+ |+..+.
T Consensus 295 ~~~C~IC~~---~~~~~v~-lpCgH~~fC~~C~~~~-------~~CP~--CR~~i~ 337 (345)
T 3t6p_A 295 ERTCKVCMD---KEVSVVF-IPCGHLVVCQECAPSL-------RKCPI--CRGIIK 337 (345)
T ss_dssp TCBCTTTSS---SBCCEEE-ETTCCEEECTTTGGGC-------SBCTT--TCCBCC
T ss_pred CCCCCccCC---cCCceEE-cCCCChhHhHHHHhcC-------CcCCC--CCCCcc
Confidence 578999997 7899999 899999 999998765 47999 998765
No 68
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=97.84 E-value=2.3e-06 Score=64.10 Aligned_cols=46 Identities=20% Similarity=0.488 Sum_probs=0.0
Q ss_pred eeccCcCCCCccccCC-----------------ccccCCCccccHHHHHHHHHhcCCCCCCCCCCCCCCcc
Q 029888 91 ISCPLSGKPITELAEP-----------------VRSVECKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQ 144 (186)
Q Consensus 91 l~CPI~~~~~~~l~dP-----------------V~s~~CgH~fck~~I~~~l~~~~~~~~CPv~GC~~~l~ 144 (186)
-.|+||+. .|.+| +....|+|.|...||..|+.. ...||+ |+..+.
T Consensus 49 d~CaICl~---~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~---~~~CP~--Cr~~~~ 111 (117)
T 4a0k_B 49 DNCAICRN---HIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT---RQVCPL--DNREWE 111 (117)
T ss_dssp -----------------------------------------------------------------------
T ss_pred CcCeECCh---hhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHc---CCcCCC--CCCeee
Confidence 45888886 44543 333589999999999999983 468999 988654
No 69
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.67 E-value=1.9e-05 Score=53.21 Aligned_cols=42 Identities=19% Similarity=0.475 Sum_probs=35.3
Q ss_pred eeeccCcCCCCccccCCccccCCCcc-ccHHHHHHHHHhcCCCCCCCCCCCCCCcc
Q 029888 90 NISCPLSGKPITELAEPVRSVECKHI-YEKNAIQAYIKSKNANARCPVAGCPRKLQ 144 (186)
Q Consensus 90 ~l~CPI~~~~~~~l~dPV~s~~CgH~-fck~~I~~~l~~~~~~~~CPv~GC~~~l~ 144 (186)
...|+||+. .+.++|. ..|||. ||..|+.. ...||+ |+..+.
T Consensus 15 ~~~C~IC~~---~~~~~v~-~pCgH~~~C~~C~~~-------~~~CP~--CR~~i~ 57 (68)
T 2ea5_A 15 SKDCVVCQN---GTVNWVL-LPCRHTCLCDGCVKY-------FQQCPM--CRQFVQ 57 (68)
T ss_dssp SSCCSSSSS---SCCCCEE-TTTTBCCSCTTHHHH-------CSSCTT--TCCCCC
T ss_pred CCCCCCcCc---CCCCEEE-ECCCChhhhHHHHhc-------CCCCCC--CCcchh
Confidence 567999997 6789988 899999 99999883 157999 998765
No 70
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.57 E-value=4.7e-05 Score=53.02 Aligned_cols=51 Identities=20% Similarity=0.438 Sum_probs=39.6
Q ss_pred eeeccCcCCCCccccCCccccCCC-----ccccHHHHHHHHHhcCCCCCCCCCCCCCCccC
Q 029888 90 NISCPLSGKPITELAEPVRSVECK-----HIYEKNAIQAYIKSKNANARCPVAGCPRKLQV 145 (186)
Q Consensus 90 ~l~CPI~~~~~~~l~dPV~s~~Cg-----H~fck~~I~~~l~~~~~~~~CPv~GC~~~l~~ 145 (186)
...|+||+..+ .-.+|+. ..|+ |.|-..||.+||.. .+...||+ |+..+..
T Consensus 15 ~~~C~IC~~~~-~~~~~l~-~pC~C~Gs~h~fH~~Cl~~Wl~~-~~~~~Cpl--Cr~~~~~ 70 (80)
T 2d8s_A 15 QDICRICHCEG-DDESPLI-TPCHCTGSLHFVHQACLQQWIKS-SDTRCCEL--CKYEFIM 70 (80)
T ss_dssp SCCCSSSCCCC-CSSSCEE-CSSSCCSSSCCEETTHHHHHHHH-HCCSBCSS--SCCBCCC
T ss_pred CCCCeEcCccc-cCCCeeE-eccccCCcCCeeCHHHHHHHHhh-CCCCCCCC--CCCeeec
Confidence 35699999743 2257887 6786 99999999999984 44578999 9987754
No 71
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.51 E-value=7e-05 Score=54.54 Aligned_cols=45 Identities=27% Similarity=0.516 Sum_probs=33.0
Q ss_pred eccCcCCCCccccCCccccCCCccccHHHHHHHHHhcCCCCCCCCCCCCCCc
Q 029888 92 SCPLSGKPITELAEPVRSVECKHIYEKNAIQAYIKSKNANARCPVAGCPRKL 143 (186)
Q Consensus 92 ~CPI~~~~~~~l~dPV~s~~CgH~fck~~I~~~l~~~~~~~~CPv~GC~~~l 143 (186)
.||+|..|| ..=.+...|+|+||.+|+..|... +...||. |+..+
T Consensus 3 fC~~C~~Pi---~iygRmIPCkHvFCydCa~~~~~~--~~k~Cp~--C~~~V 47 (101)
T 3vk6_A 3 FCDKCGLPI---KVYGRMIPCKHVFCYDCAILHEKK--GDKMCPG--CSDPV 47 (101)
T ss_dssp BCTTTCSBC---SEEEEEETTCCEEEHHHHHHHHHT--TCCBCTT--TCCBC
T ss_pred ecCccCCCe---EEEeeeccccccHHHHHHHHHHhc--cCCCCcC--cCCee
Confidence 599999875 333455799999999999999873 3455666 65543
No 72
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.21 E-value=0.00043 Score=47.63 Aligned_cols=48 Identities=23% Similarity=0.419 Sum_probs=36.4
Q ss_pred eeccCcCCCCccccCCccccCCCccccHHHHHHHHHhcCCCCCCCCCCCCCCcc
Q 029888 91 ISCPLSGKPITELAEPVRSVECKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQ 144 (186)
Q Consensus 91 l~CPI~~~~~~~l~dPV~s~~CgH~fck~~I~~~l~~~~~~~~CPv~GC~~~l~ 144 (186)
-.|+||.. +|..=++...|+|.|=..||..||+. .....||. |+..+.
T Consensus 16 ~~C~IC~~---~i~~g~~C~~C~h~fH~~Ci~kWl~~-~~~~~CP~--Cr~~w~ 63 (74)
T 2ct0_A 16 KICNICHS---LLIQGQSCETCGIRMHLPCVAKYFQS-NAEPRCPH--CNDYWP 63 (74)
T ss_dssp CBCSSSCC---BCSSSEECSSSCCEECHHHHHHHSTT-CSSCCCTT--TCSCCC
T ss_pred CcCcchhh---HcccCCccCCCCchhhHHHHHHHHHh-cCCCCCCC--CcCcCC
Confidence 45999997 33333344579999999999999984 44478999 987654
No 73
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=95.93 E-value=0.0017 Score=57.03 Aligned_cols=50 Identities=18% Similarity=0.446 Sum_probs=36.4
Q ss_pred eeeccCcCCCCccccC----Ccc---ccCCCccccHHHHHHHHHhcCC--------CCCCCCCCCCCCcc
Q 029888 90 NISCPLSGKPITELAE----PVR---SVECKHIYEKNAIQAYIKSKNA--------NARCPVAGCPRKLQ 144 (186)
Q Consensus 90 ~l~CPI~~~~~~~l~d----PV~---s~~CgH~fck~~I~~~l~~~~~--------~~~CPv~GC~~~l~ 144 (186)
..-|+||.. .+.+ |-. +..|||.|-..||.+|+++... ...||. |++.++
T Consensus 308 ~~ECaICys---~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPy--Cr~pIs 372 (381)
T 3k1l_B 308 ELRCNICFA---YRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPF--CKAKLS 372 (381)
T ss_dssp CCSCSSSCC---SSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTT--TCCEEE
T ss_pred CccCcccce---eecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCC--CCCcCC
Confidence 456999997 3443 422 4689999999999999984111 146999 998765
No 74
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=95.63 E-value=0.0068 Score=42.81 Aligned_cols=35 Identities=17% Similarity=0.443 Sum_probs=27.7
Q ss_pred eeeccCcCCCCccccCCccc-cCCCccccHHHHHHHHH
Q 029888 90 NISCPLSGKPITELAEPVRS-VECKHIYEKNAIQAYIK 126 (186)
Q Consensus 90 ~l~CPI~~~~~~~l~dPV~s-~~CgH~fck~~I~~~l~ 126 (186)
.+.|+||.. ..+.+||.+ ..|+|+||+.|+..+..
T Consensus 3 e~~C~~C~~--~~~~~av~~C~~C~~~~C~~Cl~~~h~ 38 (101)
T 2jun_A 3 KVLCQFCDQ--DPAQDAVKTCVTCEVSYCDECLKATHP 38 (101)
T ss_dssp CCBCTTCCS--SSCCBCCEEETTTTEEECHHHHHHHSC
T ss_pred CCCCcCCCC--CCCCCceEECCcCChHHhHHHCHHHhc
Confidence 467999985 136788865 78999999999998443
No 75
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=95.18 E-value=0.019 Score=37.47 Aligned_cols=47 Identities=15% Similarity=0.382 Sum_probs=35.0
Q ss_pred eeccCcCCCCccccCCccccCC--Cc---cccHHHHHHHHHhcCCCCCCCCCCCCCCcc
Q 029888 91 ISCPLSGKPITELAEPVRSVEC--KH---IYEKNAIQAYIKSKNANARCPVAGCPRKLQ 144 (186)
Q Consensus 91 l~CPI~~~~~~~l~dPV~s~~C--gH---~fck~~I~~~l~~~~~~~~CPv~GC~~~l~ 144 (186)
..|.||+. ...+|+. ..| .+ .|=+.||..|+.. .+...||+ |+..+.
T Consensus 7 ~~CrIC~~---~~~~~l~-~PC~C~gs~~~~H~~Cl~~W~~~-~~~~~C~~--C~~~~~ 58 (60)
T 1vyx_A 7 PVCWICNE---ELGNERF-RACGCTGELENVHRSCLSTWLTI-SRNTACQI--CGVVYN 58 (60)
T ss_dssp CEETTTTE---ECSCCCC-CSCCCSSGGGSCCHHHHHHHHHH-HTCSBCTT--TCCBCC
T ss_pred CEeEEeec---CCCCcee-cCcCCCCchhhhHHHHHHHHHHh-CCCCccCC--CCCeee
Confidence 45999985 3456665 555 44 7999999999983 45679999 987664
No 76
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=93.23 E-value=0.081 Score=43.59 Aligned_cols=48 Identities=21% Similarity=0.408 Sum_probs=36.4
Q ss_pred eeccCcCCCCccccCCccccCCCccccHHHHHHHHHhcCCCCCCCCCCCCCCcc
Q 029888 91 ISCPLSGKPITELAEPVRSVECKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQ 144 (186)
Q Consensus 91 l~CPI~~~~~~~l~dPV~s~~CgH~fck~~I~~~l~~~~~~~~CPv~GC~~~l~ 144 (186)
..|.||... +.-=++...|+|.|=..|+..|++ ..+...||. |+....
T Consensus 181 ~~C~iC~~i---v~~g~~C~~C~~~~H~~C~~~~~~-~~~~~~CP~--C~~~W~ 228 (238)
T 3nw0_A 181 KICNICHSL---LIQGQSCETCGIRMHLPCVAKYFQ-SNAEPRCPH--CNDYWP 228 (238)
T ss_dssp CBCTTTCSB---CSSCEECSSSCCEECHHHHHHHTT-TCSSCBCTT--TCCBCC
T ss_pred CcCcchhhH---HhCCcccCccChHHHHHHHHHHHH-hCCCCCCCC--CCCCCC
Confidence 469999973 333345456999999999999998 355678998 987654
No 77
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=88.13 E-value=1.4 Score=35.30 Aligned_cols=33 Identities=9% Similarity=0.139 Sum_probs=26.6
Q ss_pred eeeccCcCCCCccccCCccccCCCccccHHHHH
Q 029888 90 NISCPLSGKPITELAEPVRSVECKHIYEKNAIQ 122 (186)
Q Consensus 90 ~l~CPI~~~~~~~l~dPV~s~~CgH~fck~~I~ 122 (186)
.-.|++|..+|+++..---...||++||..|..
T Consensus 161 ~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~ 193 (220)
T 1dvp_A 161 GRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTA 193 (220)
T ss_dssp CSBCTTTCCBCCSSSCCEECTTTCCEECSTTSC
T ss_pred CCccCCCCCccCCcccccccCCcCCEEChHHhC
Confidence 468999999988777666667899999988743
No 78
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=87.21 E-value=1.5 Score=35.36 Aligned_cols=33 Identities=9% Similarity=0.172 Sum_probs=26.3
Q ss_pred eeeccCcCCCCccccCCccccCCCccccHHHHH
Q 029888 90 NISCPLSGKPITELAEPVRSVECKHIYEKNAIQ 122 (186)
Q Consensus 90 ~l~CPI~~~~~~~l~dPV~s~~CgH~fck~~I~ 122 (186)
.-.|.+|..+|+++..---...||++||..|-.
T Consensus 164 ~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~ 196 (226)
T 3zyq_A 164 AEECHRCRVQFGVMTRKHHCRACGQIFCGKCSS 196 (226)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECTTTCC
T ss_pred CCCCcCcCCCCCccccccccCCCcCEeChhhcC
Confidence 457999999988776666567899999998844
No 79
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=83.97 E-value=0.35 Score=35.87 Aligned_cols=32 Identities=16% Similarity=0.306 Sum_probs=25.9
Q ss_pred eeccCcCCCCccccCCccccCCCccccHHHHH
Q 029888 91 ISCPLSGKPITELAEPVRSVECKHIYEKNAIQ 122 (186)
Q Consensus 91 l~CPI~~~~~~~l~dPV~s~~CgH~fck~~I~ 122 (186)
..|++|..+|++|..---...||++||..|..
T Consensus 70 ~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~ 101 (125)
T 1joc_A 70 QNCMACGKGFSVTVRRHHCRQCGNIFCAECSA 101 (125)
T ss_dssp CBCTTTCCBCCSSSCCEECTTTCCEECGGGSC
T ss_pred CCCcCcCCccccccccccCCCCCeEEChHHhC
Confidence 35999999988777666667899999998843
No 80
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=83.74 E-value=1.2 Score=31.02 Aligned_cols=34 Identities=21% Similarity=0.426 Sum_probs=27.3
Q ss_pred eeeccCcCCCCccccCCccccCC----CccccHHHHHHHHHh
Q 029888 90 NISCPLSGKPITELAEPVRSVEC----KHIYEKNAIQAYIKS 127 (186)
Q Consensus 90 ~l~CPI~~~~~~~l~dPV~s~~C----gH~fck~~I~~~l~~ 127 (186)
.++|-||.+ .|++--- .+| +|.||..|-..+|+.
T Consensus 15 ~l~CtlC~e---rLEdtHF-VQCPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 15 PLCCTICHE---RLEDTHF-VQCPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp SCCCSSSCS---CCSSTTS-EECSSCSSCEECHHHHHHHHHH
T ss_pred eeEeecchh---hhccCce-eeCCCccCCeeeccccHHHHHh
Confidence 689999997 6677644 455 599999999999975
No 81
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=81.63 E-value=0.52 Score=34.27 Aligned_cols=30 Identities=27% Similarity=0.706 Sum_probs=21.7
Q ss_pred cccCCccccCCCccccHHHHHHHHHhcCCCCCCCCCCCCC
Q 029888 102 ELAEPVRSVECKHIYEKNAIQAYIKSKNANARCPVAGCPR 141 (186)
Q Consensus 102 ~l~dPV~s~~CgH~fck~~I~~~l~~~~~~~~CPv~GC~~ 141 (186)
++..|.+...||++|.+ ..+...+||. |..
T Consensus 63 L~v~p~~C~~CG~~F~~--------~~~kPsrCP~--CkS 92 (105)
T 2gmg_A 63 LLIKPAQCRKCGFVFKA--------EINIPSRCPK--CKS 92 (105)
T ss_dssp EEECCCBBTTTCCBCCC--------CSSCCSSCSS--SCC
T ss_pred EEEECcChhhCcCeecc--------cCCCCCCCcC--CCC
Confidence 45667777999999921 1346689999 976
No 82
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=81.39 E-value=0.51 Score=32.90 Aligned_cols=35 Identities=9% Similarity=0.161 Sum_probs=26.5
Q ss_pred cceeeccCcCCCCccccCCccccCCCccccHHHHH
Q 029888 88 ILNISCPLSGKPITELAEPVRSVECKHIYEKNAIQ 122 (186)
Q Consensus 88 ~~~l~CPI~~~~~~~l~dPV~s~~CgH~fck~~I~ 122 (186)
.....|.+|..+|.+|..---...||++||..|..
T Consensus 7 ~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~ 41 (88)
T 1wfk_A 7 GMESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLS 41 (88)
T ss_dssp CCCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSC
T ss_pred CcCCCCcCcCCcccCccccccCCCCCCEEChhHcC
Confidence 34457999999887776555556899999998743
No 83
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=80.82 E-value=0.58 Score=31.31 Aligned_cols=30 Identities=13% Similarity=0.337 Sum_probs=24.9
Q ss_pred eccCcCCCCccccCCccccCCCccccHHHH
Q 029888 92 SCPLSGKPITELAEPVRSVECKHIYEKNAI 121 (186)
Q Consensus 92 ~CPI~~~~~~~l~dPV~s~~CgH~fck~~I 121 (186)
.|.+|..+|++|..---...||.+||..|.
T Consensus 13 ~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs 42 (73)
T 1vfy_A 13 ACMICSKKFSLLNRKHHCRSCGGVFCQEHS 42 (73)
T ss_dssp BCTTTCCBCBTTBCCEECTTTCCEECGGGS
T ss_pred cccCCCCccCCccccccCCCCCEEEccccc
Confidence 599999998877766666789999999874
No 84
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=79.23 E-value=0.61 Score=31.91 Aligned_cols=31 Identities=16% Similarity=0.303 Sum_probs=25.4
Q ss_pred eccCcCCCCccccCCccccCCCccccHHHHH
Q 029888 92 SCPLSGKPITELAEPVRSVECKHIYEKNAIQ 122 (186)
Q Consensus 92 ~CPI~~~~~~~l~dPV~s~~CgH~fck~~I~ 122 (186)
.|.+|..+|++|..---...||.+||..|..
T Consensus 21 ~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~ 51 (82)
T 2yw8_A 21 HCRQCEKEFSISRRKHHCRNCGHIFCNTCSS 51 (82)
T ss_dssp BCTTTCCBCBTTBCCEECTTTCCEECSGGGC
T ss_pred cccCcCCcccCccccccCCCCCCEEChHHhC
Confidence 4999999888777666667899999998854
No 85
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=78.59 E-value=0.16 Score=38.29 Aligned_cols=56 Identities=20% Similarity=0.320 Sum_probs=36.5
Q ss_pred eeeccCcCCCCccccCCccccCCCccccHHHHHHHHHhcCCCCCCCCCCCCCCccCCCC
Q 029888 90 NISCPLSGKPITELAEPVRSVECKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQVSKV 148 (186)
Q Consensus 90 ~l~CPI~~~~~~~l~dPV~s~~CgH~fck~~I~~~l~~~~~~~~CPv~GC~~~l~~~~L 148 (186)
...||+|..++ .+.++.....-...|-..++.+.|. .-.+.||..||...+...++
T Consensus 66 ~~~CP~Cr~~~-~~~~~~~~l~~~~~~~d~~~~~~i~--~L~v~Cpn~GC~~~~~l~~l 121 (141)
T 3knv_A 66 PQNCAACVHEG-IYEEGISILESSSAFPDNAARREVE--SLPAVCPSDGCTWKGTLKEY 121 (141)
T ss_dssp CEECHHHHHTT-CCCTTTTEECGGGCEECHHHHHHHH--TSEEECCSTTCCCEEEHHHH
T ss_pred CCCCCCCCCcc-cccccccccchhhhcccHHHHHHHc--ccccccCCCCCCCEeEHHHH
Confidence 36899998753 3333322122346677777888887 35678999999877664443
No 86
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=78.53 E-value=0.7 Score=31.72 Aligned_cols=34 Identities=12% Similarity=0.145 Sum_probs=26.8
Q ss_pred eeeccCcCCCCccccCCccccCCCccccHHHHHH
Q 029888 90 NISCPLSGKPITELAEPVRSVECKHIYEKNAIQA 123 (186)
Q Consensus 90 ~l~CPI~~~~~~~l~dPV~s~~CgH~fck~~I~~ 123 (186)
...|.+|..+|++|..---...||++||..|...
T Consensus 21 ~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 54 (84)
T 1z2q_A 21 APACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRH 54 (84)
T ss_dssp CCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCC
T ss_pred CCCCcCcCCccccchhcccccCCCcEEChHHhCC
Confidence 3469999999888776665678999999988443
No 87
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=77.56 E-value=0.82 Score=31.87 Aligned_cols=32 Identities=9% Similarity=0.089 Sum_probs=25.7
Q ss_pred eeccCcCCCCccccCCccccCCCccccHHHHH
Q 029888 91 ISCPLSGKPITELAEPVRSVECKHIYEKNAIQ 122 (186)
Q Consensus 91 l~CPI~~~~~~~l~dPV~s~~CgH~fck~~I~ 122 (186)
..|.+|..+|.++..---...||++||..|..
T Consensus 21 ~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~ 52 (90)
T 3t7l_A 21 PNCMNCQVKFTFTKRRHHCRACGKVFCGVCCN 52 (90)
T ss_dssp CBCTTTCCBCCSSSCCEECTTTCCEECGGGSC
T ss_pred CcCcCCCCcccchhhCccccCCCCEECCcccC
Confidence 45999999887776666667899999998844
No 88
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=76.14 E-value=0.74 Score=26.78 Aligned_cols=15 Identities=27% Similarity=0.428 Sum_probs=11.5
Q ss_pred eeeccCcCCCCccccCCc
Q 029888 90 NISCPLSGKPITELAEPV 107 (186)
Q Consensus 90 ~l~CPI~~~~~~~l~dPV 107 (186)
-|.||+|++ .|..|-
T Consensus 5 GFiCP~C~~---~l~s~~ 19 (34)
T 3mjh_B 5 GFICPQCMK---SLGSAD 19 (34)
T ss_dssp EEECTTTCC---EESSHH
T ss_pred ccCCcHHHH---HcCCHH
Confidence 589999997 666654
No 89
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=75.97 E-value=0.87 Score=31.20 Aligned_cols=31 Identities=10% Similarity=0.193 Sum_probs=24.9
Q ss_pred eeccCcCCCCccccCCccccCCCccccHHHH
Q 029888 91 ISCPLSGKPITELAEPVRSVECKHIYEKNAI 121 (186)
Q Consensus 91 l~CPI~~~~~~~l~dPV~s~~CgH~fck~~I 121 (186)
..|.+|..+|.+|..---...||.+||..|.
T Consensus 15 ~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs 45 (84)
T 1x4u_A 15 GNCTGCSATFSVLKKRRSCSNCGNSFCSRCC 45 (84)
T ss_dssp SSCSSSCCCCCSSSCCEECSSSCCEECTTTS
T ss_pred CcCcCcCCccccchhhhhhcCCCcEEChhhc
Confidence 3599999988777666555689999999883
No 90
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=75.84 E-value=3.9 Score=26.80 Aligned_cols=55 Identities=15% Similarity=0.381 Sum_probs=34.5
Q ss_pred cceeeccCcCCCCcc------------ccCCccccCCCccccH-HHHHHHHHh--cCCCCCCCCCCCCCCcc
Q 029888 88 ILNISCPLSGKPITE------------LAEPVRSVECKHIYEK-NAIQAYIKS--KNANARCPVAGCPRKLQ 144 (186)
Q Consensus 88 ~~~l~CPI~~~~~~~------------l~dPV~s~~CgH~fck-~~I~~~l~~--~~~~~~CPv~GC~~~l~ 144 (186)
...+.|++|.+.|.. -..|+....|+..|-. ..+...+.. ..+...|++ |...+.
T Consensus 6 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~--C~~~f~ 75 (96)
T 2dmd_A 6 SGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQI--CPYASR 75 (96)
T ss_dssp CCCCCBTTTTBCCCCHHHHHHHGGGCCCCCSEECSSSCCEESSHHHHHHHHHHSCCCCCEECSS--SSCEES
T ss_pred CcCeECCCCCCccCCHHHHHHHHHhcCCCCCEeCCCCCCccCCHHHHHHHHHHhCCCCCccCCC--CCCccC
Confidence 346889999874311 0256666778888754 445555553 234578999 987654
No 91
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}
Probab=75.19 E-value=3.4 Score=26.11 Aligned_cols=38 Identities=16% Similarity=0.396 Sum_probs=20.9
Q ss_pred CCccccCCCcccc-HHHHHHHHHh--cCCCCCCCCCCCCCCcc
Q 029888 105 EPVRSVECKHIYE-KNAIQAYIKS--KNANARCPVAGCPRKLQ 144 (186)
Q Consensus 105 dPV~s~~CgH~fc-k~~I~~~l~~--~~~~~~CPv~GC~~~l~ 144 (186)
.|+....|+..|. +..+...+.. ..+...|++ |+..+.
T Consensus 28 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~--C~~~f~ 68 (82)
T 2kmk_A 28 RPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQV--CGKAFS 68 (82)
T ss_dssp CCEECSSSCCEESSHHHHHHHHHHHHTCCCEECTT--TSCEES
T ss_pred CCeeCCcCChhhCCHHHHHHHHHHhcCCCCCcCCC--cchhhC
Confidence 3445556666663 3344444432 345567888 876553
No 92
>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}
Probab=73.07 E-value=1.3 Score=31.01 Aligned_cols=58 Identities=22% Similarity=0.488 Sum_probs=33.2
Q ss_pred eeccCcCCCCc--cccCCccccCCC-c-cccHHHHHHHHHhcCCCCCCCCCCCCCCccCCCCccCH
Q 029888 91 ISCPLSGKPIT--ELAEPVRSVECK-H-IYEKNAIQAYIKSKNANARCPVAGCPRKLQVSKVVCDS 152 (186)
Q Consensus 91 l~CPI~~~~~~--~l~dPV~s~~Cg-H-~fck~~I~~~l~~~~~~~~CPv~GC~~~l~~~~L~~d~ 152 (186)
.+||||+.++. .|.+.+.+..-. - .=+|+.++..+. .-.++||+ |+..+--..|..+.
T Consensus 9 ~~~PlCG~~L~W~eLIeQML~~en~~ei~kDr~~Fl~~~e--~F~FkCP~--CgEEFyG~~Lp~~E 70 (95)
T 2k5c_A 9 AKCPICGSPLKWEELIEEMLIIENFEEIVKDRERFLAQVE--EFVFKCPV--CGEEFYGKTLPRRE 70 (95)
T ss_dssp EECSSSCCEECHHHHHHHSTTCSTHHHHTTCHHHHHHHHH--HSEEECTT--TCCEEETTSSCTTT
T ss_pred ccCCcCCCccCHHHHHHHHHhhccHHHHHhhHHHHHHHHH--HHhhcCCC--ccHHHhcccCChHH
Confidence 58999998541 011222211110 1 124555555555 25688999 99888877776664
No 93
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=72.99 E-value=1.2 Score=28.54 Aligned_cols=27 Identities=22% Similarity=0.567 Sum_probs=16.0
Q ss_pred eeeccCcCCCCccccCCcccc--CCCccc
Q 029888 90 NISCPLSGKPITELAEPVRSV--ECKHIY 116 (186)
Q Consensus 90 ~l~CPI~~~~~~~l~dPV~s~--~CgH~f 116 (186)
-+.||.|+.++.+-..-..+. .||+.|
T Consensus 10 iL~CP~c~~~L~~~~~~L~C~~~~c~~~Y 38 (56)
T 2kpi_A 10 ILACPACHAPLEERDAELICTGQDCGLAY 38 (56)
T ss_dssp SCCCSSSCSCEEEETTEEEECSSSCCCEE
T ss_pred heeCCCCCCcceecCCEEEcCCcCCCcEE
Confidence 478999997642222333444 566666
No 94
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1
Probab=72.41 E-value=7.1 Score=26.02 Aligned_cols=54 Identities=15% Similarity=0.383 Sum_probs=33.8
Q ss_pred ceeeccCcCCCCcc------------ccCCccccCCCccccH-HHHHHHHHh--cCCCCCCCCCCCCCCcc
Q 029888 89 LNISCPLSGKPITE------------LAEPVRSVECKHIYEK-NAIQAYIKS--KNANARCPVAGCPRKLQ 144 (186)
Q Consensus 89 ~~l~CPI~~~~~~~------------l~dPV~s~~CgH~fck-~~I~~~l~~--~~~~~~CPv~GC~~~l~ 144 (186)
..+.|++|.+.|.. -..|+....|+..|-. ..+...+.. ..+...|++ |...+.
T Consensus 16 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~--C~~~f~ 84 (106)
T 2ee8_A 16 KEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQE--CGKGFC 84 (106)
T ss_dssp CCCBCSSSCCBCSSHHHHHHHHHHHCCSCCCBCSSSCCBCSCHHHHHHHGGGSCCCCTTSCSS--SCCCCS
T ss_pred cCeECCCCCCccCCHHHHHHHHHHcCCCCCcCCCCccchhCCHHHHHHHHHHhCCCCCeECCC--cCCccc
Confidence 36889999873311 0246666778888854 445555543 234578999 987553
No 95
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=71.58 E-value=0.81 Score=39.67 Aligned_cols=51 Identities=16% Similarity=0.214 Sum_probs=0.0
Q ss_pred eeccCcCCCCccccCCccccCCCccccHHHHHHHHHh----cCCCCCCCCCCCCCCc
Q 029888 91 ISCPLSGKPITELAEPVRSVECKHIYEKNAIQAYIKS----KNANARCPVAGCPRKL 143 (186)
Q Consensus 91 l~CPI~~~~~~~l~dPV~s~~CgH~fck~~I~~~l~~----~~~~~~CPv~GC~~~l 143 (186)
-.|+.|..+|.++..---...||++||..|-...+.. ......|-. |-..+
T Consensus 376 ~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~--C~~~l 430 (434)
T 3mpx_A 376 MMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDG--CFGEL 430 (434)
T ss_dssp ---------------------------------------------------------
T ss_pred CcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHH--HHHHH
Confidence 4699999988777666656789999999998765421 122345666 65444
No 96
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=70.30 E-value=1.4 Score=31.46 Aligned_cols=48 Identities=19% Similarity=0.487 Sum_probs=32.0
Q ss_pred eeccCcCCCCccccCCccccCCCccccHHHHHHHHHhcCCCCCCCCCCCCCCccCCCCcc
Q 029888 91 ISCPLSGKPITELAEPVRSVECKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQVSKVVC 150 (186)
Q Consensus 91 l~CPI~~~~~~~l~dPV~s~~CgH~fck~~I~~~l~~~~~~~~CPv~GC~~~l~~~~L~~ 150 (186)
..||+|..++ .. ...|-...+...+. .-.+.||..||...+...+|..
T Consensus 54 ~~CP~Cr~~~-------~~---~~~~~~~~l~~~i~--~l~v~C~n~gC~~~~~~~~l~~ 101 (118)
T 3hct_A 54 HKCPVDNEIL-------LE---NQLFPDNFAKREIL--SLMVKCPNEGCLHKMELRHLED 101 (118)
T ss_dssp SBCTTTCCBC-------CG---GGCEECHHHHHHHH--TSEEECSSTTCCCEEEGGGSGG
T ss_pred CCCCCCCCCc-------CH---HhcccCHHHHHHHc--cceeECCCCCCCCEEeeHHHHH
Confidence 3899998643 21 12334455777776 3567899999998887776654
No 97
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=70.15 E-value=10 Score=26.72 Aligned_cols=50 Identities=18% Similarity=0.345 Sum_probs=35.0
Q ss_pred eeccCcCCCCccccC--Ccc-ccCCCccccHHHHHHHHHhcCCCCCCCCCCCCCCcc
Q 029888 91 ISCPLSGKPITELAE--PVR-SVECKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQ 144 (186)
Q Consensus 91 l~CPI~~~~~~~l~d--PV~-s~~CgH~fck~~I~~~l~~~~~~~~CPv~GC~~~l~ 144 (186)
-.|.||+..|.+-.+ |+. ...|+.-.||.|.+--.+ .+...||+ |...+.
T Consensus 17 qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErk--eG~q~Cpq--CktrYk 69 (93)
T 1weo_A 17 QFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERR--EGTQNCPQ--CKTRYK 69 (93)
T ss_dssp CBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHH--TSCSSCTT--TCCCCC
T ss_pred CccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHh--ccCccccc--cCCccc
Confidence 469999975433222 332 246888999999877666 57789999 987664
No 98
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=68.24 E-value=12 Score=24.15 Aligned_cols=55 Identities=15% Similarity=0.399 Sum_probs=33.7
Q ss_pred cceeeccCcCCCCcc------------ccCCccccCCCccccH-HHHHHHHHh--cC--CCCCCCCCCCCCCcc
Q 029888 88 ILNISCPLSGKPITE------------LAEPVRSVECKHIYEK-NAIQAYIKS--KN--ANARCPVAGCPRKLQ 144 (186)
Q Consensus 88 ~~~l~CPI~~~~~~~------------l~dPV~s~~CgH~fck-~~I~~~l~~--~~--~~~~CPv~GC~~~l~ 144 (186)
...+.|++|.+.|.. -..|+....|+..|.. ..+...+.. .. +...|++ |...+.
T Consensus 5 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~--C~~~f~ 76 (95)
T 2yt9_A 5 SSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQS--CGKGFS 76 (95)
T ss_dssp CSCEECSSSCCEESSSHHHHHHHHHSCSSCSEECSSSCCEESCHHHHHHHHHHHCCCCCSSBCCSS--SCCCBS
T ss_pred CCCeECCCCCCccCChHHHHHHHHhcCCCCCCcCCCCCCccCCHHHHHHHHHHhcCCCCCceECCC--ccchhC
Confidence 346889999873311 1245666678887754 445555553 11 5678999 987653
No 99
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=67.21 E-value=1.8 Score=32.01 Aligned_cols=46 Identities=20% Similarity=0.373 Sum_probs=30.1
Q ss_pred eeccCcCCCCccccCCccccCCCccccHHHHHHHHHhcCCCCCCCCCCCCC
Q 029888 91 ISCPLSGKPITELAEPVRSVECKHIYEKNAIQAYIKSKNANARCPVAGCPR 141 (186)
Q Consensus 91 l~CPI~~~~~~~l~dPV~s~~CgH~fck~~I~~~l~~~~~~~~CPv~GC~~ 141 (186)
..|..|..+|+++..---...||.+||..|....+. ....|-. |-.
T Consensus 20 ~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~---~vRVC~~--C~~ 65 (120)
T 1y02_A 20 PSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGN---GPRLCLL--CQR 65 (120)
T ss_dssp CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC-------CCEEHH--HHH
T ss_pred CcccCcCCccccccccccCCCCCCeeCHHHhCCCCC---CceECHH--HHH
Confidence 359999998876655554567999999999655443 2345666 644
No 100
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Probab=67.05 E-value=14 Score=25.14 Aligned_cols=59 Identities=19% Similarity=0.456 Sum_probs=34.5
Q ss_pred eeeccCcCCCCcc------------ccCCcccc--CCCccccH-HHHHHHHHh--cCCCCCCCCCCCCCCccC-CCC
Q 029888 90 NISCPLSGKPITE------------LAEPVRSV--ECKHIYEK-NAIQAYIKS--KNANARCPVAGCPRKLQV-SKV 148 (186)
Q Consensus 90 ~l~CPI~~~~~~~------------l~dPV~s~--~CgH~fck-~~I~~~l~~--~~~~~~CPv~GC~~~l~~-~~L 148 (186)
.+.|++|++.|.. -..|+... .||..|.. ..+...+.. ..+...||+.+|+..+.. ..|
T Consensus 34 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L 110 (124)
T 1ubd_C 34 VHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNL 110 (124)
T ss_dssp CEECTTTCCEESSHHHHHHHGGGTSCCCCEECCSTTCCCEESCHHHHHHHHHHHHCCCCCCCCSTTCCCCCSSTTTT
T ss_pred CeECCCCCchhCCHHHHHHHHHHcCCCCCeeCCCCCCcCccCCHHHHHHHHHHhCCCCceECCCCCCCCccCCHHHH
Confidence 5778888863210 02345543 38888754 444455542 345688986679887653 444
No 101
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Probab=66.50 E-value=8 Score=26.28 Aligned_cols=9 Identities=33% Similarity=0.866 Sum_probs=5.5
Q ss_pred eeeccCcCC
Q 029888 90 NISCPLSGK 98 (186)
Q Consensus 90 ~l~CPI~~~ 98 (186)
.+.|++|.+
T Consensus 7 ~~~C~~C~~ 15 (124)
T 2dlq_A 7 GVECPTCHK 15 (124)
T ss_dssp SCCCTTTCC
T ss_pred CCCCCCCCC
Confidence 456666665
No 102
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=65.85 E-value=4.1 Score=30.92 Aligned_cols=45 Identities=16% Similarity=0.324 Sum_probs=31.6
Q ss_pred eeccCcCCCCccccCCccccCCCccccHHHHHHHHH--------hcCCCCCCCCCCCCC
Q 029888 91 ISCPLSGKPITELAEPVRSVECKHIYEKNAIQAYIK--------SKNANARCPVAGCPR 141 (186)
Q Consensus 91 l~CPI~~~~~~~l~dPV~s~~CgH~fck~~I~~~l~--------~~~~~~~CPv~GC~~ 141 (186)
..|-+|+.- -+=+-...|..+|+..||..-+. ...+.+.||+ |..
T Consensus 64 d~C~vC~~G----G~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~--C~~ 116 (142)
T 2lbm_A 64 EQCRWCAEG----GNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYI--CHP 116 (142)
T ss_dssp CSCSSSCCC----SSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTT--TCC
T ss_pred CeecccCCC----CcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeec--ccC
Confidence 458888753 23333457999999999996542 1357899999 963
No 103
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=64.52 E-value=9.7 Score=21.22 Aligned_cols=31 Identities=16% Similarity=0.329 Sum_probs=16.1
Q ss_pred CccccCCCcccc-HHHHHHHHHh--cCCCCCCCC
Q 029888 106 PVRSVECKHIYE-KNAIQAYIKS--KNANARCPV 136 (186)
Q Consensus 106 PV~s~~CgH~fc-k~~I~~~l~~--~~~~~~CPv 136 (186)
|+....||..|. +..+...++. ..+...||.
T Consensus 10 ~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~ 43 (45)
T 2epq_A 10 PYSCPVCGLRFKRKDRMSYHVRSHDGSVGKSGPS 43 (45)
T ss_dssp SSEETTTTEECSCHHHHHHHHHHHSCCCCCCCCC
T ss_pred CCcCCCCCcccCCHHHHHHHHHHccCCCCCCCcC
Confidence 333344544443 3344444442 346688999
No 104
>4e17_B Catenin alpha-1; four helix bundle, cell adhesion; 2.30A {Mus musculus}
Probab=64.16 E-value=3.3 Score=24.86 Aligned_cols=21 Identities=19% Similarity=0.387 Sum_probs=17.9
Q ss_pred hhhhhHHHHHHHHHHhhccCC
Q 029888 4 FGDCTHHSAAIQSVGNTYQPG 24 (186)
Q Consensus 4 ~~~~~~~~~al~~l~~~y~~~ 24 (186)
..+|++..+|||.|-.+|..+
T Consensus 18 v~eCnavrqALQdLlseY~~~ 38 (40)
T 4e17_B 18 VAECNAVRQALQDLLSEYMGN 38 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHhcc
Confidence 568999999999999999754
No 105
>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}
Probab=63.94 E-value=5.8 Score=24.98 Aligned_cols=39 Identities=15% Similarity=0.375 Sum_probs=24.9
Q ss_pred CCccccCCCccccH-HHHHHHHHh--cCCCCCCCCCCCCCCccC
Q 029888 105 EPVRSVECKHIYEK-NAIQAYIKS--KNANARCPVAGCPRKLQV 145 (186)
Q Consensus 105 dPV~s~~CgH~fck-~~I~~~l~~--~~~~~~CPv~GC~~~l~~ 145 (186)
.|+....||-+|-. ..+...++. ..+...|++ |++.+..
T Consensus 3 Kpy~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~--C~k~F~~ 44 (60)
T 4gzn_C 3 RPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPE--CGKCFRD 44 (60)
T ss_dssp CCEECTTTCCEESSHHHHHHHHHHHHTCCCEECTT--TCCEESS
T ss_pred CCccCCCCCCEeCCHHHHHHHHHHhCCCcCeECCC--CCCCcCC
Confidence 46666667776643 445555543 456788999 9887653
No 106
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=63.30 E-value=2.4 Score=28.17 Aligned_cols=11 Identities=27% Similarity=0.830 Sum_probs=8.7
Q ss_pred eeeccCcCCCC
Q 029888 90 NISCPLSGKPI 100 (186)
Q Consensus 90 ~l~CPI~~~~~ 100 (186)
-+.||+|+.|+
T Consensus 10 iL~CP~ck~~L 20 (67)
T 2jny_A 10 VLACPKDKGPL 20 (67)
T ss_dssp CCBCTTTCCBC
T ss_pred HhCCCCCCCcC
Confidence 47899999764
No 107
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=61.49 E-value=2.8 Score=27.89 Aligned_cols=11 Identities=18% Similarity=0.640 Sum_probs=8.5
Q ss_pred eeeccCcCCCC
Q 029888 90 NISCPLSGKPI 100 (186)
Q Consensus 90 ~l~CPI~~~~~ 100 (186)
-+.||+|+.++
T Consensus 8 iL~CP~ck~~L 18 (68)
T 2jr6_A 8 ILVCPVTKGRL 18 (68)
T ss_dssp CCBCSSSCCBC
T ss_pred heECCCCCCcC
Confidence 47899998754
No 108
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=61.45 E-value=2.7 Score=27.95 Aligned_cols=11 Identities=36% Similarity=0.920 Sum_probs=8.5
Q ss_pred eeeccCcCCCC
Q 029888 90 NISCPLSGKPI 100 (186)
Q Consensus 90 ~l~CPI~~~~~ 100 (186)
-+.||+|+.++
T Consensus 8 iL~CP~ck~~L 18 (68)
T 2hf1_A 8 ILVCPLCKGPL 18 (68)
T ss_dssp ECBCTTTCCBC
T ss_pred heECCCCCCcC
Confidence 47899998754
No 109
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=60.85 E-value=3 Score=27.79 Aligned_cols=11 Identities=27% Similarity=0.948 Sum_probs=8.5
Q ss_pred eeeccCcCCCC
Q 029888 90 NISCPLSGKPI 100 (186)
Q Consensus 90 ~l~CPI~~~~~ 100 (186)
-+.||+|+.++
T Consensus 8 iL~CP~ck~~L 18 (69)
T 2pk7_A 8 ILACPICKGPL 18 (69)
T ss_dssp TCCCTTTCCCC
T ss_pred heeCCCCCCcC
Confidence 47899998754
No 110
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=59.57 E-value=14 Score=24.95 Aligned_cols=38 Identities=16% Similarity=0.394 Sum_probs=21.4
Q ss_pred CccccCCCccc--cHHHHHHHHHh-cCCCCCCCCCCCCCCccC
Q 029888 106 PVRSVECKHIY--EKNAIQAYIKS-KNANARCPVAGCPRKLQV 145 (186)
Q Consensus 106 PV~s~~CgH~f--ck~~I~~~l~~-~~~~~~CPv~GC~~~l~~ 145 (186)
|+....||..| .+..+..+++. ..+...|++ |.+.+..
T Consensus 34 ~~~C~~C~k~F~~~~~~L~~H~~~h~~k~~~C~~--Cgk~F~~ 74 (96)
T 2ctd_A 34 SVSCPTCQAVGRKTIEGLKKHMENCKQEMFTCHH--CGKQLRS 74 (96)
T ss_dssp CEECTTTCSCEESSHHHHHHHHHHHCCCCCCCSS--SCCCCSS
T ss_pred CcCCCCCCCCcccCHHHHHHHHHHHCCCCeECCC--CCCeeCC
Confidence 33334455555 34555555542 245678999 9876643
No 111
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=59.05 E-value=3.4 Score=25.53 Aligned_cols=37 Identities=11% Similarity=0.394 Sum_probs=19.4
Q ss_pred CccccCCCccccHHHHHHHHHhcCCCCCCCCCCCCCCcc
Q 029888 106 PVRSVECKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQ 144 (186)
Q Consensus 106 PV~s~~CgH~fck~~I~~~l~~~~~~~~CPv~GC~~~l~ 144 (186)
|+....||..|.....+..+-...+...|+. |++.+.
T Consensus 14 ~~~C~~C~k~F~~~~~l~~~H~~~k~~~C~~--C~k~f~ 50 (62)
T 1vd4_A 14 SFKCPVCSSTFTDLEANQLFDPMTGTFRCTF--CHTEVE 50 (62)
T ss_dssp EEECSSSCCEEEHHHHHHHEETTTTEEBCSS--SCCBCE
T ss_pred CccCCCCCchhccHHHhHhhcCCCCCEECCC--CCCccc
Confidence 3443445555544433331111345678999 988765
No 112
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=57.94 E-value=21 Score=20.79 Aligned_cols=24 Identities=17% Similarity=0.270 Sum_probs=15.6
Q ss_pred HHHHHHHH-h--cCCCCCCCCCCCCCCcc
Q 029888 119 NAIQAYIK-S--KNANARCPVAGCPRKLQ 144 (186)
Q Consensus 119 ~~I~~~l~-~--~~~~~~CPv~GC~~~l~ 144 (186)
..|..+++ . ..+...|++ |.+.+.
T Consensus 26 ~~L~~H~~~~H~~~k~~~C~~--C~k~F~ 52 (54)
T 2eps_A 26 DHLNGHIKQVHTSERPHKCQV--WVSGPS 52 (54)
T ss_dssp HHHHHHHHHTSCCCCCCCSSS--SCCSSC
T ss_pred HHHHHHHHHhcCCCCCccCCC--CCCCCC
Confidence 44566654 2 345678999 988764
No 113
>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A
Probab=56.77 E-value=9 Score=24.08 Aligned_cols=14 Identities=29% Similarity=0.904 Sum_probs=7.5
Q ss_pred CCCCCCCCCCCCCc
Q 029888 130 ANARCPVAGCPRKL 143 (186)
Q Consensus 130 ~~~~CPv~GC~~~l 143 (186)
+...||+.||++.+
T Consensus 30 ~~~~C~~~~C~~~f 43 (85)
T 2j7j_A 30 LPYECPHEGCDKRF 43 (85)
T ss_dssp CCEECCSTTCCCEE
T ss_pred CCeeCCCCCCcCcc
Confidence 34556665665544
No 114
>2kw0_A CCMH protein; oxidoreductase, cytochrome C maturation; NMR {Escherichia coli}
Probab=56.13 E-value=7.5 Score=27.30 Aligned_cols=37 Identities=22% Similarity=0.398 Sum_probs=26.7
Q ss_pred CCCCCCCCCCCC-CccCCCCccCHHHHHHHHHHHhcCccc
Q 029888 130 ANARCPVAGCPR-KLQVSKVVCDSLLLVDIDEMRRTSKET 168 (186)
Q Consensus 130 ~~~~CPv~GC~~-~l~~~~L~~d~~L~~~I~~~r~~~~~~ 168 (186)
...+||+ |.. .|..++-.....|+.+|.++...++..
T Consensus 22 ~~LRCpv--CqnqsI~dSnA~iA~dlR~~Vre~l~~G~Sd 59 (90)
T 2kw0_A 22 EELRCPK--CQNNSIADSNSMIATDLRQKVYELMQEGKSK 59 (90)
T ss_dssp HSSBCSC--TTSCTTTSCCCHHHHHHHHHHHHHHHHTCCH
T ss_pred HcCcCCC--CCCCchhhcCcHHHHHHHHHHHHHHHcCCCH
Confidence 4589999 976 566666655667888888887765543
No 115
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=54.68 E-value=5.2 Score=24.36 Aligned_cols=9 Identities=22% Similarity=0.552 Sum_probs=6.6
Q ss_pred eeeccCcCC
Q 029888 90 NISCPLSGK 98 (186)
Q Consensus 90 ~l~CPI~~~ 98 (186)
.+.||.|+.
T Consensus 5 ~~~CP~C~~ 13 (50)
T 1pft_A 5 QKVCPACES 13 (50)
T ss_dssp CCSCTTTSC
T ss_pred cEeCcCCCC
Confidence 567888875
No 116
>1yc5_A NAD-dependent deacetylase; SIR2, sirtuin, SIR2TM, SIRT1, nicotinamide, hydrolase; HET: ALY; 1.40A {Thermotoga maritima} SCOP: c.31.1.5 PDB: 2h2d_A* 2h2f_A 2h2g_A* 2h2h_A* 2h2i_A* 2h4f_A* 2h4j_A* 3d4b_A* 3d81_A* 3pdh_A* 2h4h_A* 3jr3_A* 2h59_A*
Probab=53.73 E-value=15 Score=29.68 Aligned_cols=50 Identities=14% Similarity=0.250 Sum_probs=28.8
Q ss_pred cCCCccccHHHHHHHHHhcCCCCCCCCCCCCCCccC-----CCCccCHHHHHHHHHHH
Q 029888 110 VECKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQV-----SKVVCDSLLLVDIDEMR 162 (186)
Q Consensus 110 ~~CgH~fck~~I~~~l~~~~~~~~CPv~GC~~~l~~-----~~L~~d~~L~~~I~~~r 162 (186)
..|++.|...-+...+. ......||. |+..+.+ .+..|+..+.+..+.++
T Consensus 125 ~~C~~~~~~~~~~~~~~-~~~~p~C~~--Cgg~lrP~vv~FgE~lp~~~~~~a~~~~~ 179 (246)
T 1yc5_A 125 VRCEKKYTVEDVIKKLE-SSDVPLCDD--CNSLIRPNIVFFGENLPQDALREAIGLSS 179 (246)
T ss_dssp TTTCCEEEHHHHHHHTT-TCSSCBCTT--TCCBEEEEECCBTSBCCHHHHHHHHHHHH
T ss_pred CCCCCCCcHHHHHHHhc-cCCCCCCCC--CCCccCcceEECCCCCCHHHHHHHHHHHh
Confidence 35777777766666554 234678999 9876653 23334444544444433
No 117
>2kkx_A Uncharacterized protein ECS2156; methods development, U-box domain, structural genomics, PSI- protein structure initiative; NMR {Escherichia coli} PDB: 2kky_A
Probab=53.44 E-value=15 Score=26.37 Aligned_cols=52 Identities=15% Similarity=0.296 Sum_probs=30.0
Q ss_pred ceeeccCcCCCC--c-cccCCccccCCCccccHHHHHHHHHhcCCCCCCCCCCCCCCccCC
Q 029888 89 LNISCPLSGKPI--T-ELAEPVRSVECKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQVS 146 (186)
Q Consensus 89 ~~l~CPI~~~~~--~-~l~dPV~s~~CgH~fck~~I~~~l~~~~~~~~CPv~GC~~~l~~~ 146 (186)
..++||||+.-- + .+++-.-|..| --|++.|+.+.++. + ..-|. -+..++..
T Consensus 26 e~l~CPITL~~PE~GVFvkNs~~S~VC-sLyD~~Al~~Lv~~-~--~~HPL--SREpit~s 80 (102)
T 2kkx_A 26 EAIQCPITLEQPEKGIFVKNSDGSDVC-TLFDAAAFSRLVGE-G--LPHPL--TREPITAS 80 (102)
T ss_dssp GGGCBTTTTBCCSEEEEEEETTTTSEE-EEEEHHHHHHHHHH-T--CCCTT--TCCCCCTT
T ss_pred HHcCCCeEEeeCCcceEEecCCCCccc-eecCHHHHHHHHhc-C--CCCCC--ccCCCCHh
Confidence 368999998510 0 11222223334 34999999999984 2 23465 45555544
No 118
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=52.88 E-value=4 Score=27.25 Aligned_cols=11 Identities=18% Similarity=0.597 Sum_probs=8.4
Q ss_pred eeeccCcCCCC
Q 029888 90 NISCPLSGKPI 100 (186)
Q Consensus 90 ~l~CPI~~~~~ 100 (186)
-+.||+|+.++
T Consensus 8 iL~CP~ck~~L 18 (70)
T 2js4_A 8 ILVCPVCKGRL 18 (70)
T ss_dssp CCBCTTTCCBE
T ss_pred heECCCCCCcC
Confidence 47899998753
No 119
>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=51.87 E-value=5.6 Score=25.85 Aligned_cols=46 Identities=11% Similarity=0.130 Sum_probs=33.3
Q ss_pred cCCccccCCCccccHHHHHHHHHh-cCCCCCCCCCCCCCCccCCCCccC
Q 029888 104 AEPVRSVECKHIYEKNAIQAYIKS-KNANARCPVAGCPRKLQVSKVVCD 151 (186)
Q Consensus 104 ~dPV~s~~CgH~fck~~I~~~l~~-~~~~~~CPv~GC~~~l~~~~L~~d 151 (186)
..|+....|+..|-+..+...... ......||. |++.+...+|...
T Consensus 15 ~r~~~C~~C~~~~~~~~L~~H~~~c~~~~~~C~~--C~~~~~~~~l~~H 61 (75)
T 2d9k_A 15 LRLAVCQHCDLELSILKLKEHEDYCGARTELCGN--CGRNVLVKDLKTH 61 (75)
T ss_dssp CCCEECSSSCCEECHHHHHHHHHHHHHCEEECSS--SCCEEETTGGGTH
T ss_pred CcccCCcccChHhhHHHHHHHHhHcCCCceEccc--CCCcCcHHHHHHH
Confidence 356776778888888888887632 345678999 9988777766554
No 120
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=50.79 E-value=17 Score=20.51 Aligned_cols=30 Identities=10% Similarity=0.036 Sum_probs=15.8
Q ss_pred cCCCcccc-HHHHHHHHHh--cCCCCCCCCCCCCC
Q 029888 110 VECKHIYE-KNAIQAYIKS--KNANARCPVAGCPR 141 (186)
Q Consensus 110 ~~CgH~fc-k~~I~~~l~~--~~~~~~CPv~GC~~ 141 (186)
..||..|- +..|..++.. ..+...|++ |.+
T Consensus 16 ~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~--C~k 48 (48)
T 2epr_A 16 EICGKIFRDVYHLNRHKLSHSGEKPYSSGP--SSG 48 (48)
T ss_dssp TTTTEEESSHHHHHHHGGGSCSCCCCCSCC--CCC
T ss_pred CCCCcccCCHHHHHHHHHhcCCCCCccCCC--CCC
Confidence 33444443 2334555543 345678999 864
No 121
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Probab=50.20 E-value=15 Score=27.28 Aligned_cols=36 Identities=19% Similarity=0.535 Sum_probs=15.9
Q ss_pred CccccCCCccccHH-HHHHHHHh--cCCCCCCCCCCCCCCc
Q 029888 106 PVRSVECKHIYEKN-AIQAYIKS--KNANARCPVAGCPRKL 143 (186)
Q Consensus 106 PV~s~~CgH~fck~-~I~~~l~~--~~~~~~CPv~GC~~~l 143 (186)
|+....||..|-.. .+...+.. ..+...|++ |+..+
T Consensus 105 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~--C~~~f 143 (190)
T 2i13_A 105 PYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPE--CGKSF 143 (190)
T ss_dssp CEECTTTCCEESSHHHHHHHHHHHHCCCCEECTT--TCCEE
T ss_pred CCcCCCCCCccCCHHHHHHHHHHhCCCCCeECCC--CCccc
Confidence 44444555555332 23333331 223445666 65543
No 122
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=50.19 E-value=5.7 Score=28.34 Aligned_cols=47 Identities=21% Similarity=0.287 Sum_probs=33.5
Q ss_pred cceeeccCcCCCCccccCCccccCCCccccHHHHHHHHHhcCCCCCCCCCCCCCCcc
Q 029888 88 ILNISCPLSGKPITELAEPVRSVECKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQ 144 (186)
Q Consensus 88 ~~~l~CPI~~~~~~~l~dPV~s~~CgH~fck~~I~~~l~~~~~~~~CPv~GC~~~l~ 144 (186)
.--+.|-.|-. ..+.=|+ ...|-.|..|+..+|. .+-.||+ |.+.|.
T Consensus 26 ~G~~nCKsCWf---~~k~LV~--C~dHYLCl~CLtlmL~---~SdrCpI--C~~pLP 72 (99)
T 2ko5_A 26 LGPQFCKSCWF---ENKGLVE--CNNHYLCLNCLTLLLS---VSNRCPI--CKMPLP 72 (99)
T ss_dssp SCCCCCCSSCS---CCSSEEE--CSSCEEEHHHHHHTCS---SSSEETT--TTEECC
T ss_pred cCcccChhhcc---ccCCeee--ecchhhHHHHHHHHHh---hccCCcc--cCCcCC
Confidence 44577888863 2233333 3469999999999988 5678999 988664
No 123
>4e18_B Catenin alpha-1; four helix bundle, cell adhesion; 2.40A {Mus musculus}
Probab=50.11 E-value=8 Score=25.11 Aligned_cols=21 Identities=19% Similarity=0.387 Sum_probs=18.5
Q ss_pred hhhhhHHHHHHHHHHhhccCC
Q 029888 4 FGDCTHHSAAIQSVGNTYQPG 24 (186)
Q Consensus 4 ~~~~~~~~~al~~l~~~y~~~ 24 (186)
..+|++..+|||.|-..|..+
T Consensus 37 v~eCnavrqALQdLlsEY~~~ 57 (59)
T 4e18_B 37 VAECNAVRQALQDLLSEYMGN 57 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHhcc
Confidence 568999999999999999764
No 124
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Probab=49.42 E-value=23 Score=25.10 Aligned_cols=54 Identities=20% Similarity=0.554 Sum_probs=32.6
Q ss_pred eeccCcCCCCccc------------cCCccccC--CCccccH-HHHHHHHHh--cCCCCCCCCCCCCCCcc
Q 029888 91 ISCPLSGKPITEL------------AEPVRSVE--CKHIYEK-NAIQAYIKS--KNANARCPVAGCPRKLQ 144 (186)
Q Consensus 91 l~CPI~~~~~~~l------------~dPV~s~~--CgH~fck-~~I~~~l~~--~~~~~~CPv~GC~~~l~ 144 (186)
+.|++|.+.|... ..|+.... ||..|-. ..+...+.. ..+...|++.+|.+.+.
T Consensus 63 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~~~C~k~f~ 133 (155)
T 2rpc_A 63 EECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFA 133 (155)
T ss_dssp TTCTTSSCCCSSHHHHHHHTHHHHCCCSEECSCTTTCCEESCHHHHHHHHTTTCSSCSBCCSSTTCCCCBS
T ss_pred cCCCCcccccCCHHHHHHHHHhcCCCCcccCCcCCCCCccCCHHHHHHHHHhhCCCCCccCCCCCCCCccC
Confidence 6799998743110 24555544 8888754 445555553 23457899777887654
No 125
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A
Probab=49.36 E-value=16 Score=21.15 Aligned_cols=32 Identities=16% Similarity=0.385 Sum_probs=17.8
Q ss_pred CCCcccc-HHHHHHHHHh--cCCCCCCCCCCCCCCcc
Q 029888 111 ECKHIYE-KNAIQAYIKS--KNANARCPVAGCPRKLQ 144 (186)
Q Consensus 111 ~CgH~fc-k~~I~~~l~~--~~~~~~CPv~GC~~~l~ 144 (186)
.||..|. ...+...+.. ..+...|++ |+..+.
T Consensus 6 ~C~~~f~~~~~l~~H~~~h~~~~~~~C~~--C~~~f~ 40 (57)
T 1bbo_A 6 ECGIRXKKPSMLKKHIRTHTDVRPYHCTY--CNFSFK 40 (57)
T ss_dssp TTCCBCSSHHHHHHHHHHTSSCCCEECSS--SSCEES
T ss_pred CCcCcCCCHHHHHHHHHhcCCCCCccCCC--CCchhc
Confidence 3444443 2345555543 234577999 987664
No 126
>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}
Probab=48.87 E-value=16 Score=21.19 Aligned_cols=14 Identities=14% Similarity=0.444 Sum_probs=10.4
Q ss_pred CCCCCCCCCCCCCCcc
Q 029888 129 NANARCPVAGCPRKLQ 144 (186)
Q Consensus 129 ~~~~~CPv~GC~~~l~ 144 (186)
.+...|++ |...+.
T Consensus 30 ~~~~~C~~--C~~~f~ 43 (57)
T 3uk3_C 30 EKPYKCEF--CEYAAA 43 (57)
T ss_dssp CCCEECSS--SSCEES
T ss_pred CCCcCCCC--CcchhC
Confidence 45678999 987654
No 127
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=48.82 E-value=8.6 Score=26.74 Aligned_cols=29 Identities=24% Similarity=0.399 Sum_probs=22.1
Q ss_pred ceeeccCcCCCCccccCCccccCCCccccHH
Q 029888 89 LNISCPLSGKPITELAEPVRSVECKHIYEKN 119 (186)
Q Consensus 89 ~~l~CPI~~~~~~~l~dPV~s~~CgH~fck~ 119 (186)
..-+|..|.+.+ -|..|+... ||.+||..
T Consensus 24 ~~~rC~~C~kkv-gl~~~f~Cr-Cg~~FC~~ 52 (85)
T 1wff_A 24 IMKHCFLCGKKT-GLATSFECR-CGNNFCAS 52 (85)
T ss_dssp CCCBCSSSCCBC-SSSSCEECT-TCCEECTT
T ss_pred cCccchhhCCee-cccCCeEcC-CCCEeccc
Confidence 356899999865 333699974 99999974
No 128
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=47.34 E-value=6.5 Score=30.07 Aligned_cols=48 Identities=17% Similarity=0.260 Sum_probs=32.5
Q ss_pred eeeccCcCCCCccccCCc-cccCCCccccHHHHHHHHHhcCCCCCCCCCCCCC
Q 029888 90 NISCPLSGKPITELAEPV-RSVECKHIYEKNAIQAYIKSKNANARCPVAGCPR 141 (186)
Q Consensus 90 ~l~CPI~~~~~~~l~dPV-~s~~CgH~fck~~I~~~l~~~~~~~~CPv~GC~~ 141 (186)
.-.|.+|++||+.+.++- ....|+|.+|+.|= .|+. ....+.|-+ |.+
T Consensus 68 ~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~-~~~~-~~~~W~C~v--C~k 116 (153)
T 2zet_C 68 ETHCARCLQPYRLLLNSRRQCLECSLFVCKSCS-HAHP-EEQGWLCDP--CHL 116 (153)
T ss_dssp GTBCTTTCCBGGGCSSCCEECTTTCCEECGGGE-ECCS-SSSSCEEHH--HHH
T ss_pred CccchhhcCccccccCCCCcCCCCCchhhcccc-cccC-CCCcEeeHH--HHH
Confidence 567999999987665553 33578999999874 2333 345677777 753
No 129
>2hl7_A Cytochrome C-type biogenesis protein CCMH; three-helices bundle, oxidoreductase; HET: PG4; 1.70A {Pseudomonas aeruginosa}
Probab=47.22 E-value=12 Score=25.87 Aligned_cols=36 Identities=22% Similarity=0.315 Sum_probs=25.9
Q ss_pred CCCCCCCCCCCC-CccCCCCccCHHHHHHHHHHHhcCcc
Q 029888 130 ANARCPVAGCPR-KLQVSKVVCDSLLLVDIDEMRRTSKE 167 (186)
Q Consensus 130 ~~~~CPv~GC~~-~l~~~~L~~d~~L~~~I~~~r~~~~~ 167 (186)
...+||+ |.+ .|..++-.....|+.+|.++...++.
T Consensus 25 ~~LRCp~--Cqnqsi~dSna~iA~dlR~~V~~~l~~G~s 61 (84)
T 2hl7_A 25 QELRCPK--CQNQDIADSNAPIAADLRKQIYGQLQQGKS 61 (84)
T ss_dssp HHEECTT--SSSCBTTTCCSHHHHHHHHHHHHHHHHTCC
T ss_pred HcCcCCC--CCCCchhhcCcHHHHHHHHHHHHHHHcCCC
Confidence 4478999 976 56666665566788888888776554
No 130
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=47.15 E-value=8.8 Score=29.65 Aligned_cols=8 Identities=50% Similarity=1.248 Sum_probs=5.9
Q ss_pred CCCCCCCCCC
Q 029888 132 ARCPVAGCPR 141 (186)
Q Consensus 132 ~~CPv~GC~~ 141 (186)
..||+ |+.
T Consensus 154 ~~CP~--Cg~ 161 (170)
T 3pwf_A 154 EYCPV--CGA 161 (170)
T ss_dssp SBCTT--TCC
T ss_pred CCCCC--CCC
Confidence 47999 865
No 131
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=47.11 E-value=17 Score=22.49 Aligned_cols=24 Identities=8% Similarity=0.272 Sum_probs=14.7
Q ss_pred HHHHHHHHh--cCCCCCCCCCCCCCCcc
Q 029888 119 NAIQAYIKS--KNANARCPVAGCPRKLQ 144 (186)
Q Consensus 119 ~~I~~~l~~--~~~~~~CPv~GC~~~l~ 144 (186)
..+...+.. ..+...|++ |.+.+.
T Consensus 28 ~~L~~H~~~h~~~~~~~C~~--C~~~f~ 53 (72)
T 1x6e_A 28 SILVQHQRVHTGEKPYKCLE--CGKAFS 53 (72)
T ss_dssp HHHHHHHHGGGCSCCEECSS--SCCEES
T ss_pred HHHHHHHHhcCCCCCeECCC--CCcccC
Confidence 334455543 345678999 987654
No 132
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=45.91 E-value=18 Score=22.36 Aligned_cols=40 Identities=13% Similarity=0.257 Sum_probs=23.2
Q ss_pred ceeeccCcCCCCccccCCccccCCCccccHHHHHHHHHh--cCCCCCCCCCCCCCCccC
Q 029888 89 LNISCPLSGKPITELAEPVRSVECKHIYEKNAIQAYIKS--KNANARCPVAGCPRKLQV 145 (186)
Q Consensus 89 ~~l~CPI~~~~~~~l~dPV~s~~CgH~fck~~I~~~l~~--~~~~~~CPv~GC~~~l~~ 145 (186)
..+.|++|.+ .|.. +..+...++. ..+...|++ |.+.+..
T Consensus 16 ~~~~C~~C~k---~f~~------------~~~l~~H~~~H~~~~~~~C~~--C~k~f~~ 57 (74)
T 2lce_A 16 KPYKCDRCQA---SFRY------------KGNLASHKTVHTGEKPYRCNI--CGAQFNR 57 (74)
T ss_dssp CSBCCTTSSC---CBSC------------HHHHHHHHHHHCCCCSEECTT--TCCEESC
T ss_pred CCeECCCCCc---eeCC------------HHHHHHHHHHcCCCCCEECCC--CCchhCC
Confidence 4677888876 2322 2334444442 234578999 9876643
No 133
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=44.99 E-value=6.6 Score=27.08 Aligned_cols=44 Identities=14% Similarity=0.180 Sum_probs=27.1
Q ss_pred ceeeccCcCCCCccccCCccccCCCccccHHHHHHHHHhcCCCCCCCCCCCCCCccCCCCccCHHHHHH
Q 029888 89 LNISCPLSGKPITELAEPVRSVECKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQVSKVVCDSLLLVD 157 (186)
Q Consensus 89 ~~l~CPI~~~~~~~l~dPV~s~~CgH~fck~~I~~~l~~~~~~~~CPv~GC~~~l~~~~L~~d~~L~~~ 157 (186)
..+.||-|+.+ .+.+|-+ +.+.||- |...+.-.-..++......
T Consensus 26 ~~y~Cp~CG~~--~v~r~at---------------------GiW~C~~--Cg~~~aggay~~~t~~~~~ 69 (83)
T 1vq8_Z 26 EDHACPNCGED--RVDRQGT---------------------GIWQCSY--CDYKFTGGSYKPETPGGKT 69 (83)
T ss_dssp SCEECSSSCCE--EEEEEET---------------------TEEEETT--TCCEEECCSSSSSCHHHHH
T ss_pred ccCcCCCCCCc--ceeccCC---------------------CeEECCC--CCCEecCCEecccchHHHH
Confidence 37899999973 4444432 3466777 7776665555555544433
No 134
>2k5r_A Uncharacterized protein XF2673; solution structure, structural genomics, PSI-2, protein structure initiative; NMR {Xylella fastidiosa TEMECULA1}
Probab=44.87 E-value=6.2 Score=28.10 Aligned_cols=11 Identities=18% Similarity=0.486 Sum_probs=8.5
Q ss_pred eeeccCcCCCC
Q 029888 90 NISCPLSGKPI 100 (186)
Q Consensus 90 ~l~CPI~~~~~ 100 (186)
-+.||+|..|+
T Consensus 8 ILaCP~cK~pL 18 (97)
T 2k5r_A 8 LLCSPDTRQPL 18 (97)
T ss_dssp SCCCCTTSSCC
T ss_pred heECCCCCCcc
Confidence 46899998754
No 135
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1
Probab=44.66 E-value=19 Score=21.16 Aligned_cols=32 Identities=16% Similarity=0.499 Sum_probs=18.1
Q ss_pred CCCcccc-HHHHHHHHHh--cCCCCCCCCCCCCCCcc
Q 029888 111 ECKHIYE-KNAIQAYIKS--KNANARCPVAGCPRKLQ 144 (186)
Q Consensus 111 ~CgH~fc-k~~I~~~l~~--~~~~~~CPv~GC~~~l~ 144 (186)
.||..|- +..+...+.. ..+...|++ |...+.
T Consensus 7 ~C~~~f~~~~~l~~H~~~h~~~~~~~C~~--C~~~f~ 41 (60)
T 2adr_A 7 VCTRAFARQEHLKRHYRSHTNEKPYPCGL--CNRAFT 41 (60)
T ss_dssp TTCCCBSCHHHHHHHHHTTTSSCSEECTT--TCCEES
T ss_pred CCccccCCHHHHHHHHHHhCCCCCccCCC--CCCccC
Confidence 4444443 3445555553 234567999 987664
No 136
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A
Probab=44.63 E-value=26 Score=22.06 Aligned_cols=32 Identities=13% Similarity=0.454 Sum_probs=18.5
Q ss_pred CCCccccH-HHHHHHHHh--cCCCCCCCCCCCCCCcc
Q 029888 111 ECKHIYEK-NAIQAYIKS--KNANARCPVAGCPRKLQ 144 (186)
Q Consensus 111 ~CgH~fck-~~I~~~l~~--~~~~~~CPv~GC~~~l~ 144 (186)
.||..|.. ..+...+.. ..+...|++ |...+.
T Consensus 42 ~C~~~f~~~~~l~~H~~~h~~~~~~~C~~--C~~~f~ 76 (89)
T 2wbs_A 42 GCGWKFARSDELTRHYRKHTGHRPFQCQK--CDRAFS 76 (89)
T ss_dssp TTCCEESSHHHHHHHHHHHHCCCCEECSS--SSCEES
T ss_pred CCCCccCCHHHHHHHHHHcCCCCCccCCC--CCcccC
Confidence 47777743 344444432 334567888 876553
No 137
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=44.20 E-value=7.9 Score=30.68 Aligned_cols=9 Identities=44% Similarity=1.265 Sum_probs=6.3
Q ss_pred CCCCCCCCCCC
Q 029888 131 NARCPVAGCPR 141 (186)
Q Consensus 131 ~~~CPv~GC~~ 141 (186)
...||+ |..
T Consensus 186 p~~CP~--C~~ 194 (202)
T 1yuz_A 186 FEKCPI--CFR 194 (202)
T ss_dssp CSBCTT--TCC
T ss_pred CCCCCC--CCC
Confidence 368999 654
No 138
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=43.40 E-value=7.7 Score=30.35 Aligned_cols=8 Identities=38% Similarity=1.223 Sum_probs=5.9
Q ss_pred CCCCCCCCCC
Q 029888 132 ARCPVAGCPR 141 (186)
Q Consensus 132 ~~CPv~GC~~ 141 (186)
-.||+ |+.
T Consensus 172 ~~CP~--C~~ 179 (191)
T 1lko_A 172 ELCPA--CAH 179 (191)
T ss_dssp SBCTT--TCC
T ss_pred CCCCC--CcC
Confidence 38999 765
No 139
>1ma3_A SIR2-AF2, transcriptional regulatory protein, SIR2 family; enzyme-substrate complex, protein binding, transcription; HET: ALY MES; 2.00A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1s7g_A* 1yc2_A*
Probab=43.31 E-value=22 Score=28.82 Aligned_cols=49 Identities=18% Similarity=0.401 Sum_probs=26.0
Q ss_pred CCCccccHHHHHHHHHhcCCCCCCCCCCCCC-CccC-----CCCccCHHHHHHHHHHH
Q 029888 111 ECKHIYEKNAIQAYIKSKNANARCPVAGCPR-KLQV-----SKVVCDSLLLVDIDEMR 162 (186)
Q Consensus 111 ~CgH~fck~~I~~~l~~~~~~~~CPv~GC~~-~l~~-----~~L~~d~~L~~~I~~~r 162 (186)
.|++.|....+...+. ......||. |+. .+.+ .+-.|+..+....+.+.
T Consensus 128 ~C~~~~~~~~~~~~~~-~~~~p~C~~--Cgg~~lrP~Vv~FgE~lp~~~~~~a~~~~~ 182 (253)
T 1ma3_A 128 DCHETYDWSEFVEDFN-KGEIPRCRK--CGSYYVKPRVVLFGEPLPQRTLFEAIEEAK 182 (253)
T ss_dssp TTCCEEEGGGTHHHHH-TTCCCCCTT--TCCSCEEEEECCBTSBCCHHHHHHHHHHHH
T ss_pred CCCCcCcHHHHHHHhc-cCCCCCCCC--CCCccccceEEEeCCCCCHHHHHHHHHHHH
Confidence 3555555444555555 234678999 987 6553 23334444544444433
No 140
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=43.21 E-value=28 Score=19.17 Aligned_cols=30 Identities=7% Similarity=0.149 Sum_probs=13.8
Q ss_pred ccccCCCccccH-HHHHHHHHh--cCCCCCCCC
Q 029888 107 VRSVECKHIYEK-NAIQAYIKS--KNANARCPV 136 (186)
Q Consensus 107 V~s~~CgH~fck-~~I~~~l~~--~~~~~~CPv 136 (186)
+....||..|-. ..+...+.. ..+...|++
T Consensus 13 ~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~ 45 (46)
T 2ytn_A 13 YKCNECGKVFTQNSHLARHRGIHTGEKPSGPSS 45 (46)
T ss_dssp CBCTTTCCBCSSHHHHHHHGGGTSCCCCCSCCC
T ss_pred eECCCCCCeeCCHHHHHHHhhhcCCCCCCCCCC
Confidence 333344444433 334444432 335567887
No 141
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=42.76 E-value=6.5 Score=29.38 Aligned_cols=31 Identities=23% Similarity=0.348 Sum_probs=21.5
Q ss_pred eeeccCcCCCCccccCC-ccccCCCccccHHH
Q 029888 90 NISCPLSGKPITELAEP-VRSVECKHIYEKNA 120 (186)
Q Consensus 90 ~l~CPI~~~~~~~l~dP-V~s~~CgH~fck~~ 120 (186)
.-.|.+|+++|+.+.++ .....|+|.+|+.|
T Consensus 55 ~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C 86 (134)
T 1zbd_B 55 VNRCILCGEQLGMLGSASVVCEDCKKNVCTKC 86 (134)
T ss_dssp SSBCSSSCCBCSTTSCCEEECTTTCCEEETTS
T ss_pred CccccccCCCcccccCCCCCCCCCCccccccc
Confidence 35699999987544332 33457889888876
No 142
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=42.60 E-value=11 Score=25.50 Aligned_cols=28 Identities=11% Similarity=0.174 Sum_probs=20.8
Q ss_pred ceeeccCcCCCCccccCCccccCCCccccHH
Q 029888 89 LNISCPLSGKPITELAEPVRSVECKHIYEKN 119 (186)
Q Consensus 89 ~~l~CPI~~~~~~~l~dPV~s~~CgH~fck~ 119 (186)
...+|..|.+.+.++ |+... ||.+||..
T Consensus 24 ~~nRC~~CrKkvgL~--gf~Cr-Cg~~FCs~ 51 (74)
T 1wfl_A 24 KKNRCFMCRKKVGLT--GFDCR-CGNLFCGL 51 (74)
T ss_dssp CTTBCSSSCCBCGGG--CEECT-TSCEECSS
T ss_pred cCCcChhhCCccccc--CeecC-CCCEechh
Confidence 356899999865333 78865 99999963
No 143
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=41.34 E-value=12 Score=24.60 Aligned_cols=28 Identities=11% Similarity=0.184 Sum_probs=21.1
Q ss_pred ceeeccCcCCCCccccCCccccCCCccccHH
Q 029888 89 LNISCPLSGKPITELAEPVRSVECKHIYEKN 119 (186)
Q Consensus 89 ~~l~CPI~~~~~~~l~dPV~s~~CgH~fck~ 119 (186)
...+|..|.+.+.++ ++.. .||.+||..
T Consensus 14 ~~~rC~~C~kkvgl~--~f~C-rCg~~FC~~ 41 (64)
T 1wfh_A 14 RPNRCTVCRKRVGLT--GFMC-RCGTTFCGS 41 (64)
T ss_dssp SCCCCTTTCCCCCTT--CEEC-SSSCEECTT
T ss_pred cCCcChhhCCccCcc--CEEe-ecCCEeccc
Confidence 357899999865333 7886 699999964
No 144
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=40.95 E-value=12 Score=24.59 Aligned_cols=28 Identities=14% Similarity=0.288 Sum_probs=20.9
Q ss_pred ceeeccCcCCCCccccCCccccCCCccccHH
Q 029888 89 LNISCPLSGKPITELAEPVRSVECKHIYEKN 119 (186)
Q Consensus 89 ~~l~CPI~~~~~~~l~dPV~s~~CgH~fck~ 119 (186)
...+|..|.+.+.++ |+.. .||.+||..
T Consensus 14 ~~~rC~~C~kkvgl~--~f~C-rCg~~FC~~ 41 (64)
T 1wg2_A 14 PNNRCFSCNKKVGVM--GFKC-KCGSTFCGS 41 (64)
T ss_dssp CSCSCTTTCCCCTTS--CEEC-TTSCEECSS
T ss_pred cCCcChhhCCccccc--CeEe-ecCCEeccc
Confidence 356899999854333 7886 799999963
No 145
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=40.83 E-value=31 Score=18.88 Aligned_cols=27 Identities=7% Similarity=0.080 Sum_probs=12.7
Q ss_pred cCCCccccH-HHHHHHHHh--cCCCCCCCC
Q 029888 110 VECKHIYEK-NAIQAYIKS--KNANARCPV 136 (186)
Q Consensus 110 ~~CgH~fck-~~I~~~l~~--~~~~~~CPv 136 (186)
..||..|-. ..+...+.. ..+...|++
T Consensus 16 ~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~ 45 (46)
T 2eop_A 16 RECGKSFSFNSQLIVHQRIHTGENPSGPSS 45 (46)
T ss_dssp TTTCCBCSSHHHHHHHHTTTTTSCCSCCCC
T ss_pred CCCCchhCCHHHHHHHHHHcCCCCCCCCCC
Confidence 334444433 334444432 234567877
No 146
>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=40.83 E-value=16 Score=22.31 Aligned_cols=39 Identities=15% Similarity=0.239 Sum_probs=26.1
Q ss_pred cCCccccCCCccccHHHHHHHHHh-cCCCCCCC-CCCCCCCcc
Q 029888 104 AEPVRSVECKHIYEKNAIQAYIKS-KNANARCP-VAGCPRKLQ 144 (186)
Q Consensus 104 ~dPV~s~~CgH~fck~~I~~~l~~-~~~~~~CP-v~GC~~~l~ 144 (186)
..|+....||..|.+..+..++.. ..+...|+ . |.+.+.
T Consensus 8 ~~~~~C~~C~k~f~~~~L~~H~~~~~~~p~~C~~~--C~k~f~ 48 (66)
T 2eod_A 8 KRTQPCTYCTKEFVFDTIQSHQYQCPRLPVACPNQ--CGVGTV 48 (66)
T ss_dssp CCEEECSSSCCEEEHHHHHHHHHHCSSSEEECTTC--CSCCEE
T ss_pred CCCeeccccCCccCHHHHHHHHHHcCCcCccCCcc--cCcccc
Confidence 346666678888876667766653 23456799 8 988654
No 147
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}
Probab=39.69 E-value=56 Score=20.92 Aligned_cols=53 Identities=17% Similarity=0.376 Sum_probs=30.5
Q ss_pred eeeccC--cCCCCcc------------ccCCcccc--CCCccccHH-HHHHHHHh--cCCCCCCCCCCCCCCcc
Q 029888 90 NISCPL--SGKPITE------------LAEPVRSV--ECKHIYEKN-AIQAYIKS--KNANARCPVAGCPRKLQ 144 (186)
Q Consensus 90 ~l~CPI--~~~~~~~------------l~dPV~s~--~CgH~fck~-~I~~~l~~--~~~~~~CPv~GC~~~l~ 144 (186)
.+.|++ |.+.|.. -..|+... .|+..|... .+...+.. ..+...|++ |...+.
T Consensus 15 ~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~--C~~~f~ 86 (100)
T 2ebt_A 15 IHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGV--CNRSFS 86 (100)
T ss_dssp CEECCSSSCCCEESCHHHHHHHHHHHSCCCCEECCSSSCCCEESSHHHHHHHHHHHTSCCSCBCSS--SCCBCS
T ss_pred ceEcCCCCCCCcccCHHHHHHHHHHhCCCCCeeCCCCCCCCccCCHHHHHHHHHHhCCCCCeECCC--CcCccC
Confidence 577886 8763210 02455543 488887543 44445543 345678999 987654
No 148
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=39.42 E-value=5.5 Score=30.13 Aligned_cols=27 Identities=19% Similarity=0.511 Sum_probs=17.3
Q ss_pred ccccCCCccccHHHHHHHHHhcCCCCCCCCCCCCCCcc
Q 029888 107 VRSVECKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQ 144 (186)
Q Consensus 107 V~s~~CgH~fck~~I~~~l~~~~~~~~CPv~GC~~~l~ 144 (186)
+++..|||.|+.. .....||. |++.+.
T Consensus 133 y~C~~Cg~~~~~~---------~~~~~Cp~--CG~~~~ 159 (165)
T 2lcq_A 133 YVCIGCGRKFSTL---------PPGGVCPD--CGSKVK 159 (165)
T ss_dssp EEESSSCCEESSC---------CGGGBCTT--TCCBEE
T ss_pred EECCCCCCcccCC---------CCCCcCCC--CCCcce
Confidence 4556788888642 12247999 887653
No 149
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Probab=39.40 E-value=30 Score=19.02 Aligned_cols=31 Identities=10% Similarity=0.217 Sum_probs=14.9
Q ss_pred CccccCCCccccH-HHHHHHHHh--cCCCCCCCC
Q 029888 106 PVRSVECKHIYEK-NAIQAYIKS--KNANARCPV 136 (186)
Q Consensus 106 PV~s~~CgH~fck-~~I~~~l~~--~~~~~~CPv 136 (186)
|+....||..|-. ..+...+.. ..+...|++
T Consensus 12 ~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~ 45 (46)
T 2ema_A 12 RYKCNECGKVFSRNSQLSQHQKIHTGEKPSGPSS 45 (46)
T ss_dssp CEECSSSCCEESSHHHHHHHHTGGGCCCCCSSSC
T ss_pred CcCCCCCcchhCCHHHHHHHHHhcCCCCCCCCCC
Confidence 3333344444433 334445442 345677887
No 150
>1j8f_A SIRT2, sirtuin 2, isoform 1, silencing INFO; gene regulation, transferase; 1.70A {Homo sapiens} SCOP: c.31.1.5
Probab=39.18 E-value=17 Score=30.84 Aligned_cols=31 Identities=19% Similarity=0.493 Sum_probs=21.6
Q ss_pred CCccccHHHHHHHHHhcCCCCCCCCCCCCCCccC
Q 029888 112 CKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQV 145 (186)
Q Consensus 112 CgH~fck~~I~~~l~~~~~~~~CPv~GC~~~l~~ 145 (186)
|++.|....+...+. ......||. |+..+.+
T Consensus 167 C~~~~~~~~~~~~i~-~~~~P~C~~--Cgg~lrP 197 (323)
T 1j8f_A 167 CRHEYPLSWMKEKIF-SEVTPKCED--CQSLVKP 197 (323)
T ss_dssp TCCEECHHHHHHHHH-TTCCCBCTT--TCCBEEE
T ss_pred cCccccHHHHHHhhc-cCCCCCCcC--CCCccCC
Confidence 777887776665555 345678999 9876553
No 151
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Probab=38.85 E-value=30 Score=18.95 Aligned_cols=26 Identities=8% Similarity=0.134 Sum_probs=12.4
Q ss_pred CCCccccH-HHHHHHHHh--cCCCCCCCC
Q 029888 111 ECKHIYEK-NAIQAYIKS--KNANARCPV 136 (186)
Q Consensus 111 ~CgH~fck-~~I~~~l~~--~~~~~~CPv 136 (186)
.||..|-. ..+...+.. ..+...|++
T Consensus 17 ~C~k~f~~~~~L~~H~~~H~~~k~~~C~~ 45 (46)
T 2el4_A 17 QCAKTFSLKSQLIVHQRSHTGVKPSGPSS 45 (46)
T ss_dssp SSSCEESSHHHHHHHGGGSSSCCCSCCTT
T ss_pred CCCchhCCHHHHHHHHHHhCCCCCCCCCC
Confidence 34444433 334444432 235567887
No 152
>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*
Probab=38.63 E-value=20 Score=25.86 Aligned_cols=55 Identities=9% Similarity=0.183 Sum_probs=35.7
Q ss_pred cceeeccCcCCCCccc------------cCCccccCCCccccHH-HHHHHHHh--cCCCCCCCCCCCCCCcc
Q 029888 88 ILNISCPLSGKPITEL------------AEPVRSVECKHIYEKN-AIQAYIKS--KNANARCPVAGCPRKLQ 144 (186)
Q Consensus 88 ~~~l~CPI~~~~~~~l------------~dPV~s~~CgH~fck~-~I~~~l~~--~~~~~~CPv~GC~~~l~ 144 (186)
...+.|++|++.|... ..|+....||-+|-.. .+...+.. ..+...|++ |++.+.
T Consensus 20 ek~y~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~--C~k~F~ 89 (133)
T 2lt7_A 20 RVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCLA--CGKSFI 89 (133)
T ss_dssp EEEEEETTTCCEESCHHHHHHHHHHHHCCSCEECSSSSCEESSHHHHHHHHHHHHTCCCEEESS--SCCEES
T ss_pred CcCeECCCCCCCcCCHHHHHHHHHHcCCCCCeeCCccCeecccccchhhhccccCCCccccCCC--CCCCcC
Confidence 3579999999843110 2466667899888654 44455542 345678999 987664
No 153
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=38.56 E-value=32 Score=18.89 Aligned_cols=31 Identities=10% Similarity=0.240 Sum_probs=14.6
Q ss_pred CccccCCCccccH-HHHHHHHHh--cCCCCCCCC
Q 029888 106 PVRSVECKHIYEK-NAIQAYIKS--KNANARCPV 136 (186)
Q Consensus 106 PV~s~~CgH~fck-~~I~~~l~~--~~~~~~CPv 136 (186)
|+....||..|-. ..+...+.. ..+...|++
T Consensus 12 ~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~ 45 (46)
T 2eq0_A 12 PYKCHECGKVFRRNSHLARHQLIHTGEKPSGPSS 45 (46)
T ss_dssp CEECTTTCCEESSHHHHHHHHTTTCCCCCSCCSC
T ss_pred CeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCC
Confidence 3333344444433 334444442 235567887
No 154
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=38.22 E-value=15 Score=24.89 Aligned_cols=29 Identities=10% Similarity=0.204 Sum_probs=21.9
Q ss_pred cceeeccCcCCCCccccCCccccCCCccccHH
Q 029888 88 ILNISCPLSGKPITELAEPVRSVECKHIYEKN 119 (186)
Q Consensus 88 ~~~l~CPI~~~~~~~l~dPV~s~~CgH~fck~ 119 (186)
....+|..|.+.+.++ ++.. .||.+||..
T Consensus 23 ~~~~RC~~C~kkvgL~--~f~C-rCg~~FCs~ 51 (74)
T 1wfp_A 23 STATRCLSCNKKVGVT--GFKC-RCGSTFCGT 51 (74)
T ss_dssp CCCCBCSSSCCBCTTT--CEEC-TTSCEECTT
T ss_pred ccCccchhhcCccccc--ceEe-ccCCEeccc
Confidence 4467899999865333 8886 699999964
No 155
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=38.12 E-value=17 Score=24.19 Aligned_cols=11 Identities=18% Similarity=0.344 Sum_probs=7.4
Q ss_pred ceeeccCcCCC
Q 029888 89 LNISCPLSGKP 99 (186)
Q Consensus 89 ~~l~CPI~~~~ 99 (186)
..++|+-|+..
T Consensus 27 v~Y~C~~CG~~ 37 (70)
T 1twf_L 27 LKYICAECSSK 37 (70)
T ss_dssp CCEECSSSCCE
T ss_pred EEEECCCCCCc
Confidence 46777777763
No 156
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=38.04 E-value=34 Score=18.73 Aligned_cols=27 Identities=7% Similarity=0.127 Sum_probs=13.0
Q ss_pred cCCCccccH-HHHHHHHHh--cCCCCCCCC
Q 029888 110 VECKHIYEK-NAIQAYIKS--KNANARCPV 136 (186)
Q Consensus 110 ~~CgH~fck-~~I~~~l~~--~~~~~~CPv 136 (186)
..||..|-. ..+...+.. ..+...|++
T Consensus 16 ~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~ 45 (46)
T 2eq4_A 16 KECGKSFSRAPCLLKHERLHSGEKPSGPSS 45 (46)
T ss_dssp TTTTBCCSCHHHHHHHHHHCCSSSCCCCCC
T ss_pred CCCCCccCchHHHHHHHHhcCCCCCCCCCC
Confidence 334444433 334444442 335567887
No 157
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=37.98 E-value=30 Score=18.96 Aligned_cols=30 Identities=7% Similarity=0.165 Sum_probs=14.4
Q ss_pred ccccCCCccccH-HHHHHHHHh--cCCCCCCCC
Q 029888 107 VRSVECKHIYEK-NAIQAYIKS--KNANARCPV 136 (186)
Q Consensus 107 V~s~~CgH~fck-~~I~~~l~~--~~~~~~CPv 136 (186)
+....||..|-. ..+...+.. ..+...|++
T Consensus 13 ~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~ 45 (46)
T 2eoe_A 13 YKCNECGKVFTQNSHLANHQRIHTGVKPSGPSS 45 (46)
T ss_dssp SEETTTTEECSSHHHHHHHHGGGSCCCSCSSCC
T ss_pred eECCCcChhhCCHHHHHHHHHHcCCCCCCCCCC
Confidence 333344444433 334455543 335567887
No 158
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=37.65 E-value=32 Score=18.91 Aligned_cols=18 Identities=0% Similarity=-0.101 Sum_probs=9.6
Q ss_pred HHHHHHHHh--cCCCCCCCC
Q 029888 119 NAIQAYIKS--KNANARCPV 136 (186)
Q Consensus 119 ~~I~~~l~~--~~~~~~CPv 136 (186)
..+...+.. ..+...|++
T Consensus 26 ~~L~~H~~~H~~~~~~~C~~ 45 (46)
T 2ytk_A 26 SHLTNHWRIHTGEKPSGPSS 45 (46)
T ss_dssp HHHHHHHHHHSSSSCSSCCC
T ss_pred HHHHHHHHHHCCCCCCCCCC
Confidence 334444432 345677887
No 159
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=37.65 E-value=38 Score=18.60 Aligned_cols=31 Identities=10% Similarity=0.234 Sum_probs=14.2
Q ss_pred CccccCCCccccH-HHHHHHHHh--cCCCCCCCC
Q 029888 106 PVRSVECKHIYEK-NAIQAYIKS--KNANARCPV 136 (186)
Q Consensus 106 PV~s~~CgH~fck-~~I~~~l~~--~~~~~~CPv 136 (186)
|+....||..|-. ..+...++. ..+...|++
T Consensus 12 ~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~ 45 (46)
T 2elz_A 12 PYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGPSS 45 (46)
T ss_dssp SCBCSSSCCBCSSHHHHHHHGGGGGSCCCCCSCC
T ss_pred CeeCcccCchhCCHHHHHHHHHhcCCCCCCCCCC
Confidence 3333344444433 334444432 345577887
No 160
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=37.65 E-value=35 Score=18.74 Aligned_cols=26 Identities=4% Similarity=0.001 Sum_probs=12.2
Q ss_pred CCCccccH-HHHHHHHHh--cCCCCCCCC
Q 029888 111 ECKHIYEK-NAIQAYIKS--KNANARCPV 136 (186)
Q Consensus 111 ~CgH~fck-~~I~~~l~~--~~~~~~CPv 136 (186)
.||..|.. ..+...+.. ..+...|++
T Consensus 17 ~C~k~f~~~~~L~~H~~~H~~~k~~~C~~ 45 (46)
T 2eoq_A 17 ICGKSFCGRSRLNRHSMVHTAEKPSGPSS 45 (46)
T ss_dssp SSCCCCSSHHHHHHHHHHTTCCCSSSCCC
T ss_pred cCCchhCCHHHHHHHHHHcCCCCCCCCCC
Confidence 34444432 334444432 335567877
No 161
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=37.44 E-value=38 Score=18.56 Aligned_cols=31 Identities=6% Similarity=0.233 Sum_probs=14.3
Q ss_pred CccccCCCccccH-HHHHHHHHh--cCCCCCCCC
Q 029888 106 PVRSVECKHIYEK-NAIQAYIKS--KNANARCPV 136 (186)
Q Consensus 106 PV~s~~CgH~fck-~~I~~~l~~--~~~~~~CPv 136 (186)
|+....||..|-. ..+...+.. ..+...|++
T Consensus 12 ~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~ 45 (46)
T 2epz_A 12 PFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPSS 45 (46)
T ss_dssp SBCCTTTCCCBSSHHHHHHHHTTTTTCCCCSSCC
T ss_pred CeECCCCCceeCCHHHHHHHHHHhCCCCCCCCCC
Confidence 3333344444443 334444432 234567877
No 162
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=37.41 E-value=33 Score=18.83 Aligned_cols=8 Identities=0% Similarity=-0.164 Sum_probs=5.6
Q ss_pred CCCCCCCC
Q 029888 129 NANARCPV 136 (186)
Q Consensus 129 ~~~~~CPv 136 (186)
.+...|++
T Consensus 38 ~k~~~C~~ 45 (46)
T 2emy_A 38 EKPSGPSS 45 (46)
T ss_dssp SCCSCSSC
T ss_pred CCCCCCCC
Confidence 45677887
No 163
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Probab=37.20 E-value=25 Score=21.00 Aligned_cols=24 Identities=13% Similarity=0.296 Sum_probs=14.7
Q ss_pred HHHHHHHHh----cCCCCCCCCCCCCCCcc
Q 029888 119 NAIQAYIKS----KNANARCPVAGCPRKLQ 144 (186)
Q Consensus 119 ~~I~~~l~~----~~~~~~CPv~GC~~~l~ 144 (186)
..+...+.. ..+...|+. |++.+.
T Consensus 24 ~~l~~H~~~~H~~~~~~~~C~~--C~k~f~ 51 (66)
T 2drp_A 24 SNFCRHYVTSHKRNVKVYPCPF--CFKEFT 51 (66)
T ss_dssp HHHHHHHHHHSSSSCCCEECTT--TCCEES
T ss_pred HHHHHHHHHHcCCCCcCeECCC--CCCccC
Confidence 345555542 235578999 987664
No 164
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=37.08 E-value=34 Score=18.76 Aligned_cols=26 Identities=8% Similarity=0.180 Sum_probs=12.6
Q ss_pred CCCccccH-HHHHHHHHh--cCCCCCCCC
Q 029888 111 ECKHIYEK-NAIQAYIKS--KNANARCPV 136 (186)
Q Consensus 111 ~CgH~fck-~~I~~~l~~--~~~~~~CPv 136 (186)
.||..|-. ..+...+.. ..+...|++
T Consensus 17 ~C~k~f~~~~~L~~H~~~H~~~~~~~C~~ 45 (46)
T 2ytd_A 17 ECGKAFHRHTHLNEHRRIHTGYRPSGPSS 45 (46)
T ss_dssp SSCCEESSHHHHHHHHHHHTCCCSSCSSC
T ss_pred CCCCeeCChHHHHHHHHHcCCCCCCCCCC
Confidence 34444433 334444432 345677887
No 165
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=36.53 E-value=65 Score=21.38 Aligned_cols=13 Identities=15% Similarity=0.544 Sum_probs=8.2
Q ss_pred CCCCCCCCCCCCCcc
Q 029888 130 ANARCPVAGCPRKLQ 144 (186)
Q Consensus 130 ~~~~CPv~GC~~~l~ 144 (186)
+...|++ |.+.+.
T Consensus 79 ~~~~C~~--C~k~f~ 91 (115)
T 2dmi_A 79 KVLKCMY--CGHSFE 91 (115)
T ss_dssp SSCBCSS--SCCBCS
T ss_pred cceECCC--CCCccC
Confidence 4567777 766543
No 166
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=36.50 E-value=33 Score=18.83 Aligned_cols=9 Identities=0% Similarity=-0.186 Sum_probs=6.1
Q ss_pred cCCCCCCCC
Q 029888 128 KNANARCPV 136 (186)
Q Consensus 128 ~~~~~~CPv 136 (186)
..+...|++
T Consensus 37 ~~k~~~C~~ 45 (46)
T 2emh_A 37 GEKPSGPSS 45 (46)
T ss_dssp CSSCSSSCC
T ss_pred CCCCCCCCC
Confidence 345678887
No 167
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=36.44 E-value=40 Score=18.55 Aligned_cols=9 Identities=0% Similarity=-0.200 Sum_probs=6.0
Q ss_pred cCCCCCCCC
Q 029888 128 KNANARCPV 136 (186)
Q Consensus 128 ~~~~~~CPv 136 (186)
..+...|++
T Consensus 37 ~~~~~~C~~ 45 (46)
T 2ytm_A 37 GQRPSGPSS 45 (46)
T ss_dssp SCCCCCCCC
T ss_pred CCCCCCCCC
Confidence 345677887
No 168
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A
Probab=36.34 E-value=28 Score=22.23 Aligned_cols=23 Identities=22% Similarity=0.547 Sum_probs=13.3
Q ss_pred HHHHHHHh--cCCCCCCCCCCCCCCcc
Q 029888 120 AIQAYIKS--KNANARCPVAGCPRKLQ 144 (186)
Q Consensus 120 ~I~~~l~~--~~~~~~CPv~GC~~~l~ 144 (186)
.+...+.. ..+...|++ |...+.
T Consensus 18 ~L~~H~~~H~~~~~~~C~~--C~k~f~ 42 (88)
T 1llm_C 18 HLTTHIRTHTGEKPFACDI--CGRKFA 42 (88)
T ss_dssp HHHHHHHHHHCCCCEECTT--TCCEES
T ss_pred HHHHHHHHcCCCCCccCCC--CCCccC
Confidence 34444432 345577998 887654
No 169
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=36.26 E-value=24 Score=25.00 Aligned_cols=52 Identities=8% Similarity=0.050 Sum_probs=34.5
Q ss_pred eeccCcCCCCccccCCccccCCCccccHHHHHHHHHhcCCCCCCCCCCCCCCccCCCC
Q 029888 91 ISCPLSGKPITELAEPVRSVECKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQVSKV 148 (186)
Q Consensus 91 l~CPI~~~~~~~l~dPV~s~~CgH~fck~~I~~~l~~~~~~~~CPv~GC~~~l~~~~L 148 (186)
|+|..|.+++......+. ..=|..||+.+..+.+. ...+|-. |.+.|....+
T Consensus 33 F~C~~C~~~L~~~~~~~~-~~~g~~yC~~cy~~~f~---~~~~C~~--C~~~I~~~~~ 84 (122)
T 1m3v_A 33 LKCSSCQAQLGDIGTSSY-TKSGMILCRNDYIRLFG---NSGAGGS--GGHMGSGGDV 84 (122)
T ss_dssp HCCSSSCCCTTTSEECCE-EETTEEECHHHHHHHHC---CCCSSSC--SSCCSCCEES
T ss_pred CCcCCCCCcccccCCeEE-EECCeeecHHHHHHHcC---CCCcccc--CCCCcCchhe
Confidence 799999974310113444 45688999999888765 2236877 9888875544
No 170
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=36.13 E-value=28 Score=21.59 Aligned_cols=24 Identities=8% Similarity=0.321 Sum_probs=14.0
Q ss_pred HHHHHHHHh--cCCCCCCCCCCCCCCcc
Q 029888 119 NAIQAYIKS--KNANARCPVAGCPRKLQ 144 (186)
Q Consensus 119 ~~I~~~l~~--~~~~~~CPv~GC~~~l~ 144 (186)
..+...+.. ..+...|++ |.+.+.
T Consensus 32 ~~l~~H~~~h~~~~~~~C~~--C~~~f~ 57 (77)
T 2cot_A 32 SDLSKHRRTHTGEKPYKCDE--CGKAFI 57 (77)
T ss_dssp HHHHHHHTTTCCSCSEECSS--SCCEES
T ss_pred HHHHHHHHHcCCCcCeeCCC--CCCccC
Confidence 345555542 234567999 987654
No 171
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=36.10 E-value=38 Score=18.57 Aligned_cols=30 Identities=7% Similarity=0.181 Sum_probs=13.9
Q ss_pred ccccCCCccccH-HHHHHHHHh--cCCCCCCCC
Q 029888 107 VRSVECKHIYEK-NAIQAYIKS--KNANARCPV 136 (186)
Q Consensus 107 V~s~~CgH~fck-~~I~~~l~~--~~~~~~CPv 136 (186)
+....||..|-. ..+...+.. ..+...|++
T Consensus 13 ~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~ 45 (46)
T 2ene_A 13 YKCNECGKVFRHNSYLSRHQRIHTGEKPSGPSS 45 (46)
T ss_dssp EECSSSCCEESSHHHHHHHHTTTCCCCCCSCCC
T ss_pred eECCCCCchhCChHHHHHHHhhcCCCCCCCCCC
Confidence 333334444433 334444442 234567877
No 172
>3glr_A NAD-dependent deacetylase sirtuin-3, mitochondria; NAD dependent deacetylase, sirtuin, substrate peptide comple hydrolase, metal-binding; HET: ALY; 1.80A {Homo sapiens} PDB: 3gls_A 3glt_A* 3glu_A 4hd8_A* 4fvt_A*
Probab=35.86 E-value=11 Score=31.55 Aligned_cols=32 Identities=25% Similarity=0.593 Sum_probs=18.6
Q ss_pred CCCccccHHHHHHHHHhcCCCCCCCCCCCCCCccC
Q 029888 111 ECKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQV 145 (186)
Q Consensus 111 ~CgH~fck~~I~~~l~~~~~~~~CPv~GC~~~l~~ 145 (186)
.|++.|....+...+. ......||. |+..+.+
T Consensus 144 ~C~~~~~~~~~~~~i~-~~~~P~C~~--Cgg~lrP 175 (285)
T 3glr_A 144 VCQRPFPGEDIRADVM-ADRVPRCPV--CTGVVKP 175 (285)
T ss_dssp TTCCEEEGGGGHHHHH-TTCCCBCTT--TCCBEEE
T ss_pred CCCCcCCHHHHHHHhh-cCCCCCCCC--CCCccCC
Confidence 3555555444444444 245678999 9876553
No 173
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=35.71 E-value=40 Score=18.52 Aligned_cols=26 Identities=8% Similarity=0.225 Sum_probs=12.2
Q ss_pred CCCccccH-HHHHHHHHh--cCCCCCCCC
Q 029888 111 ECKHIYEK-NAIQAYIKS--KNANARCPV 136 (186)
Q Consensus 111 ~CgH~fck-~~I~~~l~~--~~~~~~CPv 136 (186)
.||..|-. ..+...+.. ..+...|++
T Consensus 17 ~C~k~f~~~~~L~~H~~~H~~~k~~~C~~ 45 (46)
T 2ytq_A 17 ECGKAFSSKSYLIIHMRTHSGEKPSGPSS 45 (46)
T ss_dssp SSCCBCSCHHHHHHHHTTTCCSCSSCCCC
T ss_pred ccChhhCChHHHHHHHHHhCCCCCCCCCC
Confidence 34444433 334444432 234567877
No 174
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=35.61 E-value=38 Score=18.48 Aligned_cols=27 Identities=7% Similarity=0.158 Sum_probs=12.5
Q ss_pred cCCCccccH-HHHHHHHHh--cCCCCCCCC
Q 029888 110 VECKHIYEK-NAIQAYIKS--KNANARCPV 136 (186)
Q Consensus 110 ~~CgH~fck-~~I~~~l~~--~~~~~~CPv 136 (186)
..||..|-. ..+...+.. ..+...|++
T Consensus 16 ~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~ 45 (46)
T 2ytr_A 16 NECGKAFSQTSKLARHQRIHTGEKPSGPSS 45 (46)
T ss_dssp TTTCCCCSSHHHHHHHHTTTTTCSCCCSCC
T ss_pred CCCCCccCCHHHHHHHHHhcCCCCCCCCCC
Confidence 334444433 334444432 234567777
No 175
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=35.39 E-value=11 Score=25.23 Aligned_cols=13 Identities=15% Similarity=0.731 Sum_probs=9.7
Q ss_pred CCCCCCCCCCCCCcc
Q 029888 130 ANARCPVAGCPRKLQ 144 (186)
Q Consensus 130 ~~~~CPv~GC~~~l~ 144 (186)
+...|++ |.+.+.
T Consensus 53 ~~~~C~~--C~k~F~ 65 (98)
T 2gqj_A 53 DALKCQH--CRKQFK 65 (98)
T ss_dssp HHHSCSS--SCCCCS
T ss_pred CCEECCC--CCCccC
Confidence 4578999 987664
No 176
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=34.78 E-value=42 Score=18.37 Aligned_cols=18 Identities=0% Similarity=-0.062 Sum_probs=9.6
Q ss_pred HHHHHHHHh--cCCCCCCCC
Q 029888 119 NAIQAYIKS--KNANARCPV 136 (186)
Q Consensus 119 ~~I~~~l~~--~~~~~~CPv 136 (186)
..+...+.. ..+...|++
T Consensus 26 ~~L~~H~~~H~~~~~~~C~~ 45 (46)
T 2eml_A 26 QSLSVHQRIHSGKKPSGPSS 45 (46)
T ss_dssp HHHHHHHGGGSSCCCSCSSC
T ss_pred HHHHHHHHHhcCCCCCCCCC
Confidence 344455542 335567887
No 177
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=34.64 E-value=1.3 Score=31.90 Aligned_cols=42 Identities=21% Similarity=0.432 Sum_probs=24.9
Q ss_pred ceeeccCcCCCCccccCCccccCCCccccHHHHHHHHHhcCCCCCCCCCCCCCCcc
Q 029888 89 LNISCPLSGKPITELAEPVRSVECKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQ 144 (186)
Q Consensus 89 ~~l~CPI~~~~~~~l~dPV~s~~CgH~fck~~I~~~l~~~~~~~~CPv~GC~~~l~ 144 (186)
++..||.|+.++ . + .=++.+|..|=..|. ....||- |.+.|.
T Consensus 31 M~~~CP~Cq~eL---~-~----~g~~~hC~~C~~~f~----~~a~CPd--C~q~Le 72 (101)
T 2jne_A 31 MELHCPQCQHVL---D-Q----DNGHARCRSCGEFIE----MKALCPD--CHQPLQ 72 (101)
T ss_dssp CCCBCSSSCSBE---E-E----ETTEEEETTTCCEEE----EEEECTT--TCSBCE
T ss_pred ccccCccCCCcc---e-e----cCCEEECccccchhh----ccccCcc--hhhHHH
Confidence 568899999742 2 2 123444665533332 2357999 988764
No 178
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=34.56 E-value=45 Score=18.16 Aligned_cols=18 Identities=6% Similarity=-0.001 Sum_probs=9.3
Q ss_pred HHHHHHHHh--cCCCCCCCC
Q 029888 119 NAIQAYIKS--KNANARCPV 136 (186)
Q Consensus 119 ~~I~~~l~~--~~~~~~CPv 136 (186)
..+...+.. ..+...|++
T Consensus 26 ~~L~~H~~~H~~~~~~~C~~ 45 (46)
T 2eov_A 26 SRLRIHQKCHTGERHSGPSS 45 (46)
T ss_dssp HHHHHHHHHHSCCSSCCSCC
T ss_pred HHHHHHHHhcCCCCCCCCCC
Confidence 334444432 335567887
No 179
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=34.33 E-value=25 Score=21.44 Aligned_cols=24 Identities=13% Similarity=0.303 Sum_probs=14.6
Q ss_pred HHHHHHHHh--cCCCCCCCCCCCCCCcc
Q 029888 119 NAIQAYIKS--KNANARCPVAGCPRKLQ 144 (186)
Q Consensus 119 ~~I~~~l~~--~~~~~~CPv~GC~~~l~ 144 (186)
..+...+.. ..+...|++ |...+.
T Consensus 23 ~~L~~H~~~H~~~~~~~C~~--C~~~f~ 48 (70)
T 1x5w_A 23 AALRIHERIHCTDRPFKCNY--CSFDTK 48 (70)
T ss_dssp HHHHHHHGGGCCSCSEECSS--SSCEES
T ss_pred HHHHHHHHHcCCCCCEeCCC--CCCccC
Confidence 345555543 234578999 987664
No 180
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=34.13 E-value=31 Score=20.96 Aligned_cols=10 Identities=40% Similarity=0.883 Sum_probs=7.6
Q ss_pred CCCCCCCCCCCC
Q 029888 130 ANARCPVAGCPR 141 (186)
Q Consensus 130 ~~~~CPv~GC~~ 141 (186)
..+.||+ |+.
T Consensus 29 ~dw~CP~--Cg~ 38 (46)
T 6rxn_A 29 DDWCCPV--CGV 38 (46)
T ss_dssp TTCBCTT--TCC
T ss_pred CCCcCcC--CCC
Confidence 4578999 875
No 181
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=34.10 E-value=40 Score=18.46 Aligned_cols=9 Identities=0% Similarity=-0.186 Sum_probs=6.1
Q ss_pred cCCCCCCCC
Q 029888 128 KNANARCPV 136 (186)
Q Consensus 128 ~~~~~~CPv 136 (186)
..+...|++
T Consensus 37 ~~k~~~C~~ 45 (46)
T 2emp_A 37 GEKPSGPSS 45 (46)
T ss_dssp CCSCCSCCC
T ss_pred CCCCCCCCC
Confidence 345678887
No 182
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=34.07 E-value=42 Score=18.30 Aligned_cols=18 Identities=0% Similarity=-0.143 Sum_probs=9.6
Q ss_pred HHHHHHHHh--cCCCCCCCC
Q 029888 119 NAIQAYIKS--KNANARCPV 136 (186)
Q Consensus 119 ~~I~~~l~~--~~~~~~CPv 136 (186)
..+...+.. ..+...|++
T Consensus 26 ~~L~~H~~~H~~~~~~~C~~ 45 (46)
T 2eme_A 26 AELVRHQRIHTGEKPSGPSS 45 (46)
T ss_dssp HHHHHHHGGGCCCSCCSSCC
T ss_pred HHHHHHHHhcCCCCCCCCCC
Confidence 344455542 335567887
No 183
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=33.88 E-value=9.8 Score=25.81 Aligned_cols=29 Identities=10% Similarity=0.221 Sum_probs=15.5
Q ss_pred eee-ccCcCCCCccccC----CccccCCCccccHHH
Q 029888 90 NIS-CPLSGKPITELAE----PVRSVECKHIYEKNA 120 (186)
Q Consensus 90 ~l~-CPI~~~~~~~l~d----PV~s~~CgH~fck~~ 120 (186)
.++ ||-|... ++.+ +|+...||+.||..|
T Consensus 24 ~~~wCP~C~~~--~~~~~~~~~v~C~~C~~~FC~~C 57 (86)
T 2ct7_A 24 KFLWCAQCSFG--FIYEREQLEATCPQCHQTFCVRC 57 (86)
T ss_dssp CEECCSSSCCC--EECCCSCSCEECTTTCCEECSSS
T ss_pred CEeECcCCCch--heecCCCCceEeCCCCCcccccc
Confidence 444 9977652 2222 244345777776655
No 184
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=33.85 E-value=38 Score=18.63 Aligned_cols=31 Identities=10% Similarity=0.185 Sum_probs=14.3
Q ss_pred CccccCCCccccH-HHHHHHHHh--cCCCCCCCC
Q 029888 106 PVRSVECKHIYEK-NAIQAYIKS--KNANARCPV 136 (186)
Q Consensus 106 PV~s~~CgH~fck-~~I~~~l~~--~~~~~~CPv 136 (186)
|+....||..|-. ..+...+.. ..+...|++
T Consensus 12 ~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~ 45 (46)
T 2emf_A 12 HFECTECGKAFTRKSTLSMHQKIHTGEKPSGPSS 45 (46)
T ss_dssp CEECSSSCCEESCHHHHHHHGGGTSCSSCSCCCC
T ss_pred CeECCCCCchhCCHHHHHHHHHHhCCCCCCCCCC
Confidence 3333344444433 334444432 234567877
No 185
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}
Probab=33.81 E-value=41 Score=18.42 Aligned_cols=8 Identities=0% Similarity=-0.164 Sum_probs=5.2
Q ss_pred CCCCCCCC
Q 029888 129 NANARCPV 136 (186)
Q Consensus 129 ~~~~~CPv 136 (186)
.+...|++
T Consensus 38 ~~~~~C~~ 45 (46)
T 2em0_A 38 EKPSGPSS 45 (46)
T ss_dssp SSCSCSSC
T ss_pred CCCcCCCC
Confidence 34567877
No 186
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=33.62 E-value=39 Score=18.58 Aligned_cols=8 Identities=0% Similarity=-0.164 Sum_probs=5.6
Q ss_pred CCCCCCCC
Q 029888 129 NANARCPV 136 (186)
Q Consensus 129 ~~~~~CPv 136 (186)
.+...|++
T Consensus 38 ~k~~~C~~ 45 (46)
T 2ytt_A 38 EKPSGPSS 45 (46)
T ss_dssp CCCCSCCC
T ss_pred CCCCCCCC
Confidence 45677887
No 187
>1lv3_A Hypothetical protein YACG; zinc finger, rubredoxin knuckle, C4 tetrahedral Zn+2, antiparallel beta strand and alpha helix, NESG project; NMR {Escherichia coli} SCOP: g.39.1.9
Probab=33.59 E-value=18 Score=24.09 Aligned_cols=13 Identities=31% Similarity=0.963 Sum_probs=10.3
Q ss_pred cceeeccCcCCCC
Q 029888 88 ILNISCPLSGKPI 100 (186)
Q Consensus 88 ~~~l~CPI~~~~~ 100 (186)
.....||+|++||
T Consensus 7 ~~~~~CP~Cgkp~ 19 (68)
T 1lv3_A 7 TITVNCPTCGKTV 19 (68)
T ss_dssp CCEEECTTTCCEE
T ss_pred CCcCcCCCCCCcc
Confidence 3467899999965
No 188
>1q1a_A HST2 protein; ternary complex, histone deacetylase, 2'-O-ADP ribose,, gene regulation; HET: ALY OAD; 1.50A {Saccharomyces cerevisiae} SCOP: c.31.1.5 PDB: 1szd_A* 1szc_A* 2od7_A* 2od9_A* 2qqf_A* 2qqg_A* 1q17_A* 2od2_A*
Probab=33.42 E-value=21 Score=29.59 Aligned_cols=34 Identities=15% Similarity=0.491 Sum_probs=20.9
Q ss_pred cCCCccccHHHHHHHHHh--cCCCCCCCCCCCCCCccC
Q 029888 110 VECKHIYEKNAIQAYIKS--KNANARCPVAGCPRKLQV 145 (186)
Q Consensus 110 ~~CgH~fck~~I~~~l~~--~~~~~~CPv~GC~~~l~~ 145 (186)
..|++.|...-+...+.. ......||. |+..+.+
T Consensus 140 ~~C~~~~~~~~~~~~~~~~~~~~~P~C~~--Cgg~lrP 175 (289)
T 1q1a_A 140 IGCGKVYPPQVFKSKLAEHPIKDFVKCDV--CGELVKP 175 (289)
T ss_dssp TTTCCEECHHHHHHHHTCSSCCSCCBCTT--TCCBEEE
T ss_pred CCCCCCCcHHHHHHHHhhccCCCCccCCC--CCCEECC
Confidence 346667777666655531 123578999 9876553
No 189
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=33.37 E-value=40 Score=18.47 Aligned_cols=8 Identities=0% Similarity=-0.164 Sum_probs=5.3
Q ss_pred CCCCCCCC
Q 029888 129 NANARCPV 136 (186)
Q Consensus 129 ~~~~~CPv 136 (186)
.+...|++
T Consensus 38 ~k~~~C~~ 45 (46)
T 2em7_A 38 EKPSGPSS 45 (46)
T ss_dssp CCCSSTTC
T ss_pred CCCCCCCC
Confidence 35567887
No 190
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=33.34 E-value=44 Score=18.27 Aligned_cols=26 Identities=15% Similarity=0.183 Sum_probs=12.5
Q ss_pred CCCccccH-HHHHHHHHh--cCCCCCCCC
Q 029888 111 ECKHIYEK-NAIQAYIKS--KNANARCPV 136 (186)
Q Consensus 111 ~CgH~fck-~~I~~~l~~--~~~~~~CPv 136 (186)
.||..|-. ..+...+.. ..+...|++
T Consensus 17 ~C~k~f~~~~~L~~H~~~H~~~k~~~C~~ 45 (46)
T 2ytj_A 17 ECGKAFTIRSNLIKHQKIHTKQKPSGPSS 45 (46)
T ss_dssp SSCCEESSHHHHHHHHHHTSCCCCSSCSC
T ss_pred CCChhhCCHHHHHHHHHHcCCCCCCCCCC
Confidence 34444433 334444442 335567887
No 191
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=33.19 E-value=43 Score=18.24 Aligned_cols=17 Identities=0% Similarity=-0.162 Sum_probs=9.3
Q ss_pred HHHHHHHh--cCCCCCCCC
Q 029888 120 AIQAYIKS--KNANARCPV 136 (186)
Q Consensus 120 ~I~~~l~~--~~~~~~CPv 136 (186)
.+...+.. ..+...|++
T Consensus 27 ~L~~H~~~H~~~k~~~C~~ 45 (46)
T 2emm_A 27 HLIQHQRIHTGEKPSGPSS 45 (46)
T ss_dssp HHHHHHHHHSCCCTTSSSC
T ss_pred HHHHHHHHhCCCCCCCCCC
Confidence 34444442 345677887
No 192
>2jx1_A Myelin transcription factor 1; protein-DNA complex, transcription/DNA complex; HET: DNA; NMR {Mus musculus}
Probab=33.17 E-value=19 Score=20.27 Aligned_cols=11 Identities=36% Similarity=1.132 Sum_probs=8.8
Q ss_pred CCCCCCCCCCC
Q 029888 132 ARCPVAGCPRK 142 (186)
Q Consensus 132 ~~CPv~GC~~~ 142 (186)
..||..||...
T Consensus 2 ~~CPtpGC~g~ 12 (31)
T 2jx1_A 2 LKCPTPGCDGS 12 (31)
T ss_dssp CSCSCTTCCSS
T ss_pred CcCCCCCcccc
Confidence 46999999764
No 193
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Probab=33.14 E-value=43 Score=18.25 Aligned_cols=31 Identities=10% Similarity=0.160 Sum_probs=14.6
Q ss_pred CccccCCCccccH-HHHHHHHHh--cCCCCCCCC
Q 029888 106 PVRSVECKHIYEK-NAIQAYIKS--KNANARCPV 136 (186)
Q Consensus 106 PV~s~~CgH~fck-~~I~~~l~~--~~~~~~CPv 136 (186)
|+....||..|-. ..+...+.. ..+...|++
T Consensus 12 ~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~ 45 (46)
T 2em9_A 12 PYNCKECGKSFRWASCLLKHQRVHSGEKPSGPSS 45 (46)
T ss_dssp SEECSSSCCEESSHHHHHHHGGGGTSCCCCSTTC
T ss_pred CeECCccccccCChHHHHHHHHHhCCCCCCCCCC
Confidence 3333444444443 334444432 234567877
No 194
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=32.98 E-value=44 Score=18.25 Aligned_cols=18 Identities=0% Similarity=-0.084 Sum_probs=9.7
Q ss_pred HHHHHHHHh--cCCCCCCCC
Q 029888 119 NAIQAYIKS--KNANARCPV 136 (186)
Q Consensus 119 ~~I~~~l~~--~~~~~~CPv 136 (186)
..+...+.. ..+...|++
T Consensus 26 ~~L~~H~~~H~~~k~~~C~~ 45 (46)
T 2ep2_A 26 SQLHVHQQIHTGEKPSGPSS 45 (46)
T ss_dssp HHHHHHHHTTSSCCSCCSCC
T ss_pred HHHHHHHHHhCCCCCCCCCC
Confidence 344555542 235567887
No 195
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=32.69 E-value=44 Score=18.25 Aligned_cols=31 Identities=6% Similarity=0.167 Sum_probs=14.5
Q ss_pred CccccCCCccccH-HHHHHHHHh--cCCCCCCCC
Q 029888 106 PVRSVECKHIYEK-NAIQAYIKS--KNANARCPV 136 (186)
Q Consensus 106 PV~s~~CgH~fck-~~I~~~l~~--~~~~~~CPv 136 (186)
|+....||..|-. ..+...++. ..+...|++
T Consensus 12 ~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~ 45 (46)
T 2ep0_A 12 PYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGPSS 45 (46)
T ss_dssp SEECSSSCCEESSHHHHHHHHTTTSSSCCCSCCC
T ss_pred CeeCcccCcccCChHHHHHHHHHhCCCCCCCCCC
Confidence 3333344444433 334444442 234567877
No 196
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=32.49 E-value=38 Score=18.54 Aligned_cols=31 Identities=13% Similarity=0.177 Sum_probs=14.9
Q ss_pred CccccCCCccccH-HHHHHHHHh--cCCCCCCCC
Q 029888 106 PVRSVECKHIYEK-NAIQAYIKS--KNANARCPV 136 (186)
Q Consensus 106 PV~s~~CgH~fck-~~I~~~l~~--~~~~~~CPv 136 (186)
|+....||..|-. ..+...+.. ..+...|++
T Consensus 12 ~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~ 45 (46)
T 2ysp_A 12 PYKCEKCGKGYNSKFNLDMHQKVHTGERPSGPSS 45 (46)
T ss_dssp SEEETTTTEEESCHHHHHHHHTTSCSCCSSCCSC
T ss_pred CeECCCCCCccCCHHHHHHHHHhhCCCCCCCCCC
Confidence 3433444444443 334444442 234567887
No 197
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=32.34 E-value=45 Score=18.29 Aligned_cols=9 Identities=0% Similarity=0.021 Sum_probs=6.0
Q ss_pred cCCCCCCCC
Q 029888 128 KNANARCPV 136 (186)
Q Consensus 128 ~~~~~~CPv 136 (186)
..+...|++
T Consensus 37 ~~k~~~C~~ 45 (46)
T 2eoo_A 37 REKSSGPSS 45 (46)
T ss_dssp STTSSCCSC
T ss_pred CCCCCCCCC
Confidence 345677887
No 198
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A
Probab=32.34 E-value=51 Score=18.04 Aligned_cols=8 Identities=0% Similarity=-0.164 Sum_probs=5.4
Q ss_pred CCCCCCCC
Q 029888 129 NANARCPV 136 (186)
Q Consensus 129 ~~~~~CPv 136 (186)
.+...|+.
T Consensus 38 ~k~~~C~~ 45 (46)
T 2emk_A 38 EKPSGPSS 45 (46)
T ss_dssp CCCSSCCC
T ss_pred CCCCCCCC
Confidence 45667887
No 199
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=32.23 E-value=44 Score=18.06 Aligned_cols=8 Identities=0% Similarity=-0.164 Sum_probs=5.4
Q ss_pred CCCCCCCC
Q 029888 129 NANARCPV 136 (186)
Q Consensus 129 ~~~~~CPv 136 (186)
.+...|++
T Consensus 36 ~~~~~C~~ 43 (44)
T 2emx_A 36 EKPSGPSS 43 (44)
T ss_dssp SCSCSCCC
T ss_pred CCCCCCCC
Confidence 45677877
No 200
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=32.23 E-value=45 Score=18.30 Aligned_cols=18 Identities=0% Similarity=-0.088 Sum_probs=9.5
Q ss_pred HHHHHHHHh--cCCCCCCCC
Q 029888 119 NAIQAYIKS--KNANARCPV 136 (186)
Q Consensus 119 ~~I~~~l~~--~~~~~~CPv 136 (186)
..+...+.. ..+...|++
T Consensus 26 ~~L~~H~~~H~~~~~~~C~~ 45 (46)
T 2em5_A 26 SHLNQHQRIHTGEKPSGPSS 45 (46)
T ss_dssp HHHHHHHTTTSCSCCSSCCC
T ss_pred HHHHHHHHHhCCCCCCCCCC
Confidence 344455442 234567887
No 201
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}
Probab=32.23 E-value=46 Score=18.26 Aligned_cols=26 Identities=4% Similarity=0.143 Sum_probs=12.4
Q ss_pred CCCccccH-HHHHHHHHh--cCCCCCCCC
Q 029888 111 ECKHIYEK-NAIQAYIKS--KNANARCPV 136 (186)
Q Consensus 111 ~CgH~fck-~~I~~~l~~--~~~~~~CPv 136 (186)
.||..|.. ..+...+.. ..+...|++
T Consensus 17 ~C~k~f~~~~~L~~H~~~H~~~~~~~C~~ 45 (46)
T 2el6_A 17 QCEKSFSGKLRLLVHQRMHTREKPSGPSS 45 (46)
T ss_dssp SSSCEESSHHHHHHHHGGGCCSSCCSCCC
T ss_pred CCCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence 34444432 334445442 234567877
No 202
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=32.15 E-value=40 Score=29.51 Aligned_cols=47 Identities=13% Similarity=0.297 Sum_probs=34.0
Q ss_pred eeeccCcCCCCccccCCcccc--CCCccccHHHHHHHHHh-------cCCCCCCCCCCCCCC
Q 029888 90 NISCPLSGKPITELAEPVRSV--ECKHIYEKNAIQAYIKS-------KNANARCPVAGCPRK 142 (186)
Q Consensus 90 ~l~CPI~~~~~~~l~dPV~s~--~CgH~fck~~I~~~l~~-------~~~~~~CPv~GC~~~ 142 (186)
...|-||... .+=+... .|...||+.||...+.. ....+.|=+ |...
T Consensus 93 ~~yCr~C~~G----g~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~--C~p~ 148 (386)
T 2pv0_B 93 QSYCSICCSG----ETLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYL--CLPS 148 (386)
T ss_dssp BCSCTTTCCC----SSCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTT--TSSC
T ss_pred cccceEcCCC----CeEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEE--cCCc
Confidence 4569999873 2333333 89999999999998842 346799999 9754
No 203
>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=32.13 E-value=47 Score=18.15 Aligned_cols=26 Identities=15% Similarity=0.161 Sum_probs=12.5
Q ss_pred CCCccccH-HHHHHHHHh--cCCCCCCCC
Q 029888 111 ECKHIYEK-NAIQAYIKS--KNANARCPV 136 (186)
Q Consensus 111 ~CgH~fck-~~I~~~l~~--~~~~~~CPv 136 (186)
.||..|-. ..+...+.. ..+...|+.
T Consensus 17 ~C~k~f~~~~~L~~H~~~H~~~k~~~C~~ 45 (46)
T 2yso_A 17 ECGEIFFQYVSLIEHQVLHMGQKNSGPSS 45 (46)
T ss_dssp TTCCEESSHHHHHHHHHHHSCCSCCCTTC
T ss_pred ccChhhCCHHHHHHHHHHhCCCCCCCCCC
Confidence 34444432 334444432 345677887
No 204
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=31.59 E-value=49 Score=18.09 Aligned_cols=17 Identities=0% Similarity=-0.164 Sum_probs=9.3
Q ss_pred HHHHHHHh--cCCCCCCCC
Q 029888 120 AIQAYIKS--KNANARCPV 136 (186)
Q Consensus 120 ~I~~~l~~--~~~~~~CPv 136 (186)
.+...+.. ..+...|++
T Consensus 27 ~L~~H~~~H~~~~~~~C~~ 45 (46)
T 2em8_A 27 DLDFHQRVHTGEKLSGPSS 45 (46)
T ss_dssp HHHHHHHHHHCCCCCCSCC
T ss_pred HHHHHHHHHcCCCCCCCCC
Confidence 34444432 345678887
No 205
>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=31.26 E-value=35 Score=22.76 Aligned_cols=39 Identities=23% Similarity=0.473 Sum_probs=24.1
Q ss_pred eeeccCcCCCCccccCCccccCCCccccHHHHHHHHHh--cCCCCCCCCCCCCCCccC
Q 029888 90 NISCPLSGKPITELAEPVRSVECKHIYEKNAIQAYIKS--KNANARCPVAGCPRKLQV 145 (186)
Q Consensus 90 ~l~CPI~~~~~~~l~dPV~s~~CgH~fck~~I~~~l~~--~~~~~~CPv~GC~~~l~~ 145 (186)
.+.||+|++ .|.. +..+...++. ..+...|++ |.+.+..
T Consensus 28 ~h~C~~Cgk---~F~~------------~~~L~~H~~~H~~~k~~~C~~--C~k~F~~ 68 (85)
T 2lv2_A 28 CHLCPVCGE---SFAS------------KGAQERHLRLLHAAQVFPCKY--CPATFYS 68 (85)
T ss_dssp TEECTTSCC---EESS------------HHHHHHHHHTTSCSSSEECTT--SSCEESS
T ss_pred CEECCCCCC---CcCc------------HHHHhhhhhhccCCCccCCCC--CCCEeCC
Confidence 467777775 2222 3456666653 345678999 9887653
No 206
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=30.65 E-value=3.2 Score=25.85 Aligned_cols=26 Identities=19% Similarity=0.580 Sum_probs=17.6
Q ss_pred ccCCCccccHHHHHHHHHhcCCCCCCCCCCCCC
Q 029888 109 SVECKHIYEKNAIQAYIKSKNANARCPVAGCPR 141 (186)
Q Consensus 109 s~~CgH~fck~~I~~~l~~~~~~~~CPv~GC~~ 141 (186)
...||++|..+-+.. -...+||. |+-
T Consensus 6 C~rCg~~fs~~el~~-----lP~IrCpy--CGy 31 (48)
T 4ayb_P 6 CGKCWKTFTDEQLKV-----LPGVRCPY--CGY 31 (48)
T ss_dssp CCCTTTTCCCCCSCC-----CSSSCCTT--TCC
T ss_pred eeccCCCccHHHHhh-----CCCcccCc--cCc
Confidence 357999998764322 25688999 754
No 207
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=30.57 E-value=44 Score=18.24 Aligned_cols=27 Identities=7% Similarity=0.188 Sum_probs=12.7
Q ss_pred cCCCccccH-HHHHHHHHh--cCCCCCCCC
Q 029888 110 VECKHIYEK-NAIQAYIKS--KNANARCPV 136 (186)
Q Consensus 110 ~~CgH~fck-~~I~~~l~~--~~~~~~CPv 136 (186)
..||..|-. ..+...+.. ..+...|++
T Consensus 16 ~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~ 45 (46)
T 2en1_A 16 EECGKRFTQNSQLHSHQRVHTGEKPSGPSS 45 (46)
T ss_dssp TTTTEEESSHHHHHHHGGGGSCCCCSCCCC
T ss_pred CCCCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence 334444433 334444432 335567887
No 208
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=30.20 E-value=83 Score=19.14 Aligned_cols=6 Identities=17% Similarity=0.484 Sum_probs=2.8
Q ss_pred CCCCCC
Q 029888 131 NARCPV 136 (186)
Q Consensus 131 ~~~CPv 136 (186)
...|++
T Consensus 68 ~~~C~~ 73 (79)
T 2dlk_A 68 DYICEF 73 (79)
T ss_dssp CCSCCS
T ss_pred CeeCCC
Confidence 344555
No 209
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=29.79 E-value=38 Score=21.87 Aligned_cols=48 Identities=17% Similarity=0.388 Sum_probs=33.7
Q ss_pred eeeccCcCCCCccccCCccccCCCccccHHHHHHHHHh-cCCCCCCCCCCCCCCc
Q 029888 90 NISCPLSGKPITELAEPVRSVECKHIYEKNAIQAYIKS-KNANARCPVAGCPRKL 143 (186)
Q Consensus 90 ~l~CPI~~~~~~~l~dPV~s~~CgH~fck~~I~~~l~~-~~~~~~CPv~GC~~~l 143 (186)
...|-+|++. -+=+.-..|...|-..|+.--|.. ..+.+.||. |....
T Consensus 12 ~~~C~vC~~~----~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~--C~~~~ 60 (66)
T 2lri_C 12 GARCGVCGDG----TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRS--CSGDV 60 (66)
T ss_dssp TCCCTTTSCC----TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTT--TTTCC
T ss_pred CCCcCCCCCC----CeEEECCCCCCceecccCCCccCcCCCCCEECcc--ccCCC
Confidence 4569999873 344555678999999998655542 246799999 97643
No 210
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=29.50 E-value=54 Score=17.80 Aligned_cols=30 Identities=10% Similarity=0.060 Sum_probs=13.5
Q ss_pred ccccCCCccccH-HHHHHHHHh--cCCCCCCCC
Q 029888 107 VRSVECKHIYEK-NAIQAYIKS--KNANARCPV 136 (186)
Q Consensus 107 V~s~~CgH~fck-~~I~~~l~~--~~~~~~CPv 136 (186)
+....||..|-. ..+...+.. ..+...|+.
T Consensus 13 ~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~ 45 (46)
T 2en8_A 13 HTCDECGKNFCYISALRIHQRVHMGEKCSGPSS 45 (46)
T ss_dssp EECTTTCCEESSHHHHHHHHTTTCCSCSSCCSC
T ss_pred eECCCcCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence 333344444433 334444432 234567776
No 211
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=29.39 E-value=40 Score=18.40 Aligned_cols=8 Identities=0% Similarity=-0.022 Sum_probs=5.2
Q ss_pred CCCCCCCC
Q 029888 129 NANARCPV 136 (186)
Q Consensus 129 ~~~~~CPv 136 (186)
.+...|++
T Consensus 38 ~k~~~C~~ 45 (46)
T 2epw_A 38 DKHSGPSS 45 (46)
T ss_dssp CCCSCCCC
T ss_pred CCCCCCCC
Confidence 34567887
No 212
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.47 E-value=41 Score=20.78 Aligned_cols=14 Identities=14% Similarity=0.612 Sum_probs=10.3
Q ss_pred CCCCCCCCCCCCCCcc
Q 029888 129 NANARCPVAGCPRKLQ 144 (186)
Q Consensus 129 ~~~~~CPv~GC~~~l~ 144 (186)
.+...|++ |.+.+.
T Consensus 36 ~~~~~C~~--C~k~f~ 49 (78)
T 2d9h_A 36 ALRFPCEF--CGKRFE 49 (78)
T ss_dssp TCCEECTT--TCCEES
T ss_pred CcccCCCC--CCchhC
Confidence 45678999 987664
No 213
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.41 E-value=56 Score=17.79 Aligned_cols=26 Identities=12% Similarity=0.096 Sum_probs=12.4
Q ss_pred CCCccccH-HHHHHHHHh--cCCCCCCCC
Q 029888 111 ECKHIYEK-NAIQAYIKS--KNANARCPV 136 (186)
Q Consensus 111 ~CgH~fck-~~I~~~l~~--~~~~~~CPv 136 (186)
.||..|-. ..+...+.. ..+...|++
T Consensus 17 ~C~k~f~~~~~L~~H~~~H~~~~~~~C~~ 45 (46)
T 2enc_A 17 ECGKGFYTNSQCYSHQRSHSGEKPSGPSS 45 (46)
T ss_dssp SSCCEESSHHHHHHHHHHSCCSSCCSSCC
T ss_pred CCCCcCCChHHHHHHHHHhCCCCCCCCCC
Confidence 34443332 334445443 234567887
No 214
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=28.22 E-value=22 Score=22.12 Aligned_cols=10 Identities=30% Similarity=0.883 Sum_probs=7.6
Q ss_pred CCCCCCCCCCCC
Q 029888 130 ANARCPVAGCPR 141 (186)
Q Consensus 130 ~~~~CPv~GC~~ 141 (186)
..+.||+ |..
T Consensus 34 ~dw~CP~--Cg~ 43 (52)
T 1yk4_A 34 DDWVCPL--CGA 43 (52)
T ss_dssp TTCBCTT--TCC
T ss_pred CCCcCCC--CCC
Confidence 4578999 765
No 215
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=27.94 E-value=19 Score=24.08 Aligned_cols=14 Identities=21% Similarity=0.588 Sum_probs=11.4
Q ss_pred CCCccccHHHHHHH
Q 029888 111 ECKHIYEKNAIQAY 124 (186)
Q Consensus 111 ~CgH~fck~~I~~~ 124 (186)
.||+.||..|-..|
T Consensus 55 ~C~~~FC~~C~~~w 68 (80)
T 2jmo_A 55 GCGFAFCRECKEAY 68 (80)
T ss_dssp CCSCCEETTTTEEC
T ss_pred CCCCeeccccCccc
Confidence 79999999986554
No 216
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=27.94 E-value=35 Score=22.22 Aligned_cols=10 Identities=20% Similarity=0.378 Sum_probs=5.8
Q ss_pred ceeeccCcCC
Q 029888 89 LNISCPLSGK 98 (186)
Q Consensus 89 ~~l~CPI~~~ 98 (186)
+.++|.-|+.
T Consensus 20 v~Y~C~~Cg~ 29 (63)
T 3h0g_L 20 MIYLCADCGA 29 (63)
T ss_dssp CCCBCSSSCC
T ss_pred eEEECCCCCC
Confidence 4566666665
No 217
>1k3s_A SIGE; type III, secretion, chaperone; 1.90A {Salmonella enterica} SCOP: d.198.1.1
Probab=27.91 E-value=25 Score=25.40 Aligned_cols=30 Identities=23% Similarity=0.521 Sum_probs=17.5
Q ss_pred CCCCCCCC-----CcceEE--eccCCccceeeccCcCC
Q 029888 68 GELMPGEE-----QEDIVM--TSTQSNILNISCPLSGK 98 (186)
Q Consensus 68 g~~~~~d~-----ddDi~i--~~~~~~~~~l~CPI~~~ 98 (186)
|-+.|+|| ||||.| ..+ ...+++.||.|--
T Consensus 13 Gl~~~~depal~iddd~~IYf~es-~~~lem~CPf~~l 49 (113)
T 1k3s_A 13 GLDAPEDEPLLIIDDGIQVYFNES-DHTLEMCCPFMPL 49 (113)
T ss_dssp TCC----CCCCEEETTEEEEEEEC-SSEEEEEEEEEEC
T ss_pred CCCCCCCCceEEecCCeEEEEccc-CchhhccCCcccC
Confidence 44556655 677766 222 4678999999964
No 218
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A
Probab=27.75 E-value=41 Score=18.49 Aligned_cols=8 Identities=0% Similarity=-0.164 Sum_probs=5.3
Q ss_pred CCCCCCCC
Q 029888 129 NANARCPV 136 (186)
Q Consensus 129 ~~~~~CPv 136 (186)
.+...|++
T Consensus 38 ~k~~~C~~ 45 (46)
T 2ely_A 38 EKPSGPSS 45 (46)
T ss_dssp CSSCSCCC
T ss_pred CCCCCCCC
Confidence 45567877
No 219
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=27.63 E-value=37 Score=18.58 Aligned_cols=9 Identities=0% Similarity=-0.204 Sum_probs=6.0
Q ss_pred cCCCCCCCC
Q 029888 128 KNANARCPV 136 (186)
Q Consensus 128 ~~~~~~CPv 136 (186)
..+...|++
T Consensus 37 ~~~~~~C~~ 45 (46)
T 2yu8_A 37 GGKPSGPSS 45 (46)
T ss_dssp SCCCSCSCC
T ss_pred CCCCCCCCC
Confidence 345677887
No 220
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=27.50 E-value=53 Score=17.90 Aligned_cols=26 Identities=12% Similarity=0.275 Sum_probs=12.4
Q ss_pred CCCccccH-HHHHHHHHh--cCCCCCCCC
Q 029888 111 ECKHIYEK-NAIQAYIKS--KNANARCPV 136 (186)
Q Consensus 111 ~CgH~fck-~~I~~~l~~--~~~~~~CPv 136 (186)
.||..|-. ..+...+.. ..+...|++
T Consensus 17 ~C~k~f~~~~~L~~H~~~H~~~k~~~C~~ 45 (46)
T 2en6_A 17 ECGKTFSQKSILSAHQRTHTGEKPSGPSS 45 (46)
T ss_dssp TTTEEESSHHHHHHHHHHHSSCCCSSSCC
T ss_pred CCCcccCchHHHHHHHHHcCCCCCCCCCC
Confidence 34444332 334444432 345677887
No 221
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=27.38 E-value=52 Score=25.28 Aligned_cols=46 Identities=13% Similarity=0.313 Sum_probs=32.1
Q ss_pred eeeccCcCCCCccccCCcc--ccCCCccccHHHHHHHHHh-------cCCCCCCCCCCCCC
Q 029888 90 NISCPLSGKPITELAEPVR--SVECKHIYEKNAIQAYIKS-------KNANARCPVAGCPR 141 (186)
Q Consensus 90 ~l~CPI~~~~~~~l~dPV~--s~~CgH~fck~~I~~~l~~-------~~~~~~CPv~GC~~ 141 (186)
...|-||..- .+=+. +..|...||+.||...+.. ....+.|=+ |..
T Consensus 79 ~~yC~wC~~G----g~l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~--C~P 133 (159)
T 3a1b_A 79 QSYCTICCGG----REVLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYM--CGH 133 (159)
T ss_dssp BSSCTTTSCC----SEEEECSSTTTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTT--TCS
T ss_pred cceeeEecCC----CeEEeeCCCCCCCchhHHHHHHhcCHhHHHHHhccCCCEEEe--cCC
Confidence 4568888862 12222 2379999999999988753 346788999 865
No 222
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Probab=27.30 E-value=66 Score=21.89 Aligned_cols=37 Identities=16% Similarity=0.429 Sum_probs=20.1
Q ss_pred CccccCCCccccH-HHHHHHHHhcCCCCCCCCCCCCCCcc
Q 029888 106 PVRSVECKHIYEK-NAIQAYIKSKNANARCPVAGCPRKLQ 144 (186)
Q Consensus 106 PV~s~~CgH~fck-~~I~~~l~~~~~~~~CPv~GC~~~l~ 144 (186)
|+....||..|-. ..+...+....+...|++ |++.+.
T Consensus 74 ~~~C~~C~k~f~~~~~l~~H~~~H~~~~~C~~--C~k~f~ 111 (129)
T 2wbt_A 74 QFVCPLCLMPFSSSVSLKQHIRYTEHTKVCPV--CKKEFT 111 (129)
T ss_dssp SEECTTTCCEESSHHHHHHHHHHTCCCCBCTT--TCCBCS
T ss_pred CeECCCCCcccCCHhHHHHHHHHCCCCCCCCC--CCcccC
Confidence 3333444444433 334555542245678999 987664
No 223
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=26.92 E-value=25 Score=24.43 Aligned_cols=37 Identities=16% Similarity=0.332 Sum_probs=21.8
Q ss_pred eeeccCcCCCCccccCC-----ccccCCCccccHHHHHHHHHhcCCCCCCCCCCCCC
Q 029888 90 NISCPLSGKPITELAEP-----VRSVECKHIYEKNAIQAYIKSKNANARCPVAGCPR 141 (186)
Q Consensus 90 ~l~CPI~~~~~~~l~dP-----V~s~~CgH~fck~~I~~~l~~~~~~~~CPv~GC~~ 141 (186)
.+.|++|+- .-+| .....=|..|+. ....+.||+ |+.
T Consensus 35 ~y~C~vCGy----vYD~~~Gdp~~gI~pGT~fed---------lPddW~CPv--Cga 76 (87)
T 1s24_A 35 KWICITCGH----IYDEALGDEAEGFTPGTRFED---------IPDDWCCPD--CGA 76 (87)
T ss_dssp EEEETTTTE----EEETTSCCTTTTCCSCCCGGG---------CCTTCCCSS--SCC
T ss_pred eEECCCCCe----EecCCcCCcccCcCCCCChhH---------CCCCCCCCC--CCC
Confidence 688999983 3344 222233555543 234578999 764
No 224
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=26.88 E-value=81 Score=17.02 Aligned_cols=27 Identities=7% Similarity=0.180 Sum_probs=12.3
Q ss_pred cCCCccccH-HHHHHHHH-h--cCCCCCCCC
Q 029888 110 VECKHIYEK-NAIQAYIK-S--KNANARCPV 136 (186)
Q Consensus 110 ~~CgH~fck-~~I~~~l~-~--~~~~~~CPv 136 (186)
..||..|-. ..+...++ . ..+...|++
T Consensus 16 ~~C~k~F~~~~~L~~H~~~~H~~~k~~~C~~ 46 (47)
T 2epx_A 16 IECGKAFIQNTSLIRHWRYYHTGEKPSGPSS 46 (47)
T ss_dssp SSSCCCBSSHHHHHHHHTTTTTTSCSSSCCC
T ss_pred CccCchhCChHHHHHHhHhhcCCCCCCCCCC
Confidence 334444433 33444444 2 234567776
No 225
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=26.70 E-value=44 Score=22.09 Aligned_cols=53 Identities=15% Similarity=0.227 Sum_probs=28.3
Q ss_pred ceeeccCcCCCCccc----------cCCccccCCCccccHH-HHHHHHHh-cCCCCCCCCCCCCCCc
Q 029888 89 LNISCPLSGKPITEL----------AEPVRSVECKHIYEKN-AIQAYIKS-KNANARCPVAGCPRKL 143 (186)
Q Consensus 89 ~~l~CPI~~~~~~~l----------~dPV~s~~CgH~fck~-~I~~~l~~-~~~~~~CPv~GC~~~l 143 (186)
..+.|++|.+.|... ..|+....|+..|... .+...+.. ..+...|++ |...+
T Consensus 15 ~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~C~~C~~~f~~~~~l~~H~~H~~~~~~~C~~--C~~~f 79 (107)
T 1wjp_A 15 EVYQCRLCNAKLSSLLEQGSHERLCRNAAVCPYCSLRFFSPELKQEHESKCEYKKLTCLE--CMRTF 79 (107)
T ss_dssp CCCBCTTTCCBCSSHHHHHHHHHHHHHSBCCTTTCCCBSSHHHHHHHHHHCSTGGGEEGG--GTEEC
T ss_pred cCeECCCCCCccCCHHHHHHHHHHCCCCccCCCCCCccCCHHHHHHHHHcCCCCCccCcc--ccchh
Confidence 368899998733100 1355556677766533 33333331 223456777 76544
No 226
>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}
Probab=26.51 E-value=59 Score=19.64 Aligned_cols=26 Identities=19% Similarity=0.512 Sum_probs=15.4
Q ss_pred HHHHHHHHh--cCCCCCCCCCCCCCCcc
Q 029888 119 NAIQAYIKS--KNANARCPVAGCPRKLQ 144 (186)
Q Consensus 119 ~~I~~~l~~--~~~~~~CPv~GC~~~l~ 144 (186)
..+...+.. ..+...|++.+|.+.+.
T Consensus 33 ~~L~~H~~~H~~~~~~~C~~~~C~k~f~ 60 (72)
T 2epa_A 33 SHLKAHTRTHTGEKPFSCSWKGCERRFA 60 (72)
T ss_dssp HHHHHHHHHHSSSCSEECCCTTCCCEES
T ss_pred HHHHHHHHhcCCCCCccCCCCCCCcccC
Confidence 344455442 34567897666987654
No 227
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1
Probab=26.31 E-value=50 Score=20.00 Aligned_cols=23 Identities=17% Similarity=0.478 Sum_probs=14.0
Q ss_pred HHHHHHHh--cCCCCCCCCCCCCCCcc
Q 029888 120 AIQAYIKS--KNANARCPVAGCPRKLQ 144 (186)
Q Consensus 120 ~I~~~l~~--~~~~~~CPv~GC~~~l~ 144 (186)
.+...+.. ..+...|++ |++.+.
T Consensus 36 ~l~~H~~~h~~~~~~~C~~--C~~~f~ 60 (73)
T 1f2i_G 36 ELTRHIRIHTGQKPFQCRI--CMRNFS 60 (73)
T ss_dssp HHHHHHHHHHCCCCEECTT--TCCEES
T ss_pred HHHHHHHhhCCCCCeECCC--CCchhC
Confidence 34444432 345678999 987664
No 228
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=26.26 E-value=21 Score=30.42 Aligned_cols=32 Identities=16% Similarity=0.294 Sum_probs=25.0
Q ss_pred eeeccCcCCCC-ccccCCccccCCCccccHHHH
Q 029888 90 NISCPLSGKPI-TELAEPVRSVECKHIYEKNAI 121 (186)
Q Consensus 90 ~l~CPI~~~~~-~~l~dPV~s~~CgH~fck~~I 121 (186)
...|-.|+..| +++..-.....||.++|+.|.
T Consensus 357 ~t~C~~C~~~~~g~~~qg~~C~~C~~~~h~~C~ 389 (406)
T 2vrw_B 357 TTSCKACQMLLRGTFYQGYRCYRCRAPAHKECL 389 (406)
T ss_dssp CCBCTTTCCBCCSSSSCEEEETTTCCEECGGGG
T ss_pred CCCCccccchhceeCCCCCCCCCCcCccchhhh
Confidence 46799999866 356666777889999999984
No 229
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=25.85 E-value=70 Score=17.35 Aligned_cols=27 Identities=11% Similarity=0.163 Sum_probs=12.3
Q ss_pred cCCCccccH-HHHHHHHHh--cCCCCCCCC
Q 029888 110 VECKHIYEK-NAIQAYIKS--KNANARCPV 136 (186)
Q Consensus 110 ~~CgH~fck-~~I~~~l~~--~~~~~~CPv 136 (186)
..||..|-. ..+...+.. ..+...|++
T Consensus 16 ~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~ 45 (46)
T 2ep3_A 16 AECGKAFTDRSNLFTHQKIHTGEKPSGPSS 45 (46)
T ss_dssp SSSCCEESSHHHHHHHHTTTTTSCCCCTTC
T ss_pred CCCCchhCCHHHHHHHHHHcCCCCCCCCCC
Confidence 334444433 334444432 234567776
No 230
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=25.25 E-value=72 Score=17.35 Aligned_cols=17 Identities=0% Similarity=-0.011 Sum_probs=8.7
Q ss_pred HHHHHHHh--cCCCCCCCC
Q 029888 120 AIQAYIKS--KNANARCPV 136 (186)
Q Consensus 120 ~I~~~l~~--~~~~~~CPv 136 (186)
.+...+.. ..+...|++
T Consensus 27 ~L~~H~~~H~~~k~~~C~~ 45 (46)
T 2em2_A 27 HLASHLRIHTGEKPSGPSS 45 (46)
T ss_dssp HHHHHHHHHCCCCSSCSSC
T ss_pred HHHHHHHHhCCCCCCCCCC
Confidence 34444432 345567876
No 231
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=24.61 E-value=23 Score=19.43 Aligned_cols=9 Identities=22% Similarity=0.641 Sum_probs=7.7
Q ss_pred eeeccCcCC
Q 029888 90 NISCPLSGK 98 (186)
Q Consensus 90 ~l~CPI~~~ 98 (186)
.+.||+|+.
T Consensus 3 k~~CpvCk~ 11 (28)
T 2jvx_A 3 DFCCPKCQY 11 (28)
T ss_dssp CEECTTSSC
T ss_pred cccCccccc
Confidence 588999985
No 232
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=24.57 E-value=24 Score=24.23 Aligned_cols=8 Identities=38% Similarity=1.070 Sum_probs=5.2
Q ss_pred eeccCcCC
Q 029888 91 ISCPLSGK 98 (186)
Q Consensus 91 l~CPI~~~ 98 (186)
..||.|..
T Consensus 3 ~~CP~C~~ 10 (81)
T 2jrp_A 3 ITCPVCHH 10 (81)
T ss_dssp CCCSSSCS
T ss_pred CCCCCCCC
Confidence 45777765
No 233
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=24.02 E-value=81 Score=21.90 Aligned_cols=48 Identities=17% Similarity=0.420 Sum_probs=31.7
Q ss_pred eeeccCcCCCCccccCCccccCCCccccHHHHHHH--HHh-----------cCCCCCCCCCCCCC
Q 029888 90 NISCPLSGKPITELAEPVRSVECKHIYEKNAIQAY--IKS-----------KNANARCPVAGCPR 141 (186)
Q Consensus 90 ~l~CPI~~~~~~~l~dPV~s~~CgH~fck~~I~~~--l~~-----------~~~~~~CPv~GC~~ 141 (186)
+-.|+||..-=..-.-|-+ .|+.+|=-.|+.++ ++. ....+.||. |..
T Consensus 15 D~~C~VC~~~t~~~l~pCR--vC~RvfH~~CL~r~gy~~~~~a~e~~l~A~T~~GWSC~~--Cen 75 (89)
T 1wil_A 15 DEMCDVCEVWTAESLFPCR--VCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHY--CDN 75 (89)
T ss_dssp SCCCTTTCCCCSSCCSSCS--SSSSCCCHHHHHHHTSCCCCCCCSCSCCCSSSSSCCCTT--TCC
T ss_pred CcccCccccccccceeccc--cccccccHhhcccccccccHHHHHHHHccCCCCCccccc--cch
Confidence 4569998720011234555 79999999999996 211 235789999 955
No 234
>1wfe_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=23.89 E-value=36 Score=23.39 Aligned_cols=29 Identities=21% Similarity=0.267 Sum_probs=22.9
Q ss_pred cceeeccC--cCCCCccccCCccccCCCccccHH
Q 029888 88 ILNISCPL--SGKPITELAEPVRSVECKHIYEKN 119 (186)
Q Consensus 88 ~~~l~CPI--~~~~~~~l~dPV~s~~CgH~fck~ 119 (186)
....+|+. |.+. .| -|+....|+.+||..
T Consensus 23 ~~~~~C~~~~Ck~~--~~-l~f~C~~C~~~FC~~ 53 (86)
T 1wfe_A 23 HKSYSCSFKGCTDV--EL-VAVICPYCEKNFCLR 53 (86)
T ss_dssp SCCEECCSTTCCCE--ES-SCEECTTTCCEECGG
T ss_pred CCCCCCCCcCCCCC--Cc-cceECCCCCcccccc
Confidence 34678999 9972 44 799988899999974
No 235
>1pxe_A Neural zinc finger transcription factor 1; CCHHC zinc binding domain, neural zinc finger factor-1, DNA binding domain, metal binding protein; NMR {Rattus norvegicus} SCOP: g.73.1.1
Probab=23.55 E-value=38 Score=22.17 Aligned_cols=13 Identities=31% Similarity=1.025 Sum_probs=10.0
Q ss_pred CCCCCCCCCCCCC
Q 029888 130 ANARCPVAGCPRK 142 (186)
Q Consensus 130 ~~~~CPv~GC~~~ 142 (186)
....||..||...
T Consensus 16 ~~~~CPtpGC~G~ 28 (63)
T 1pxe_A 16 RESKCPTPGCDGT 28 (63)
T ss_dssp CCCCSCCSSCCCC
T ss_pred ccccCCCCCcCcc
Confidence 4567999999753
No 236
>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.53 E-value=79 Score=17.17 Aligned_cols=26 Identities=8% Similarity=0.144 Sum_probs=13.4
Q ss_pred CCCccccH-HHHHHHHHh--cCCCCCCCC
Q 029888 111 ECKHIYEK-NAIQAYIKS--KNANARCPV 136 (186)
Q Consensus 111 ~CgH~fck-~~I~~~l~~--~~~~~~CPv 136 (186)
.||..|.. ..+...++. ..+...|++
T Consensus 19 ~C~k~f~~~~~L~~H~~~H~~~k~~~C~~ 47 (48)
T 2ent_A 19 GCGWRFSRSDELSRHRRSHSGVKPSGPSS 47 (48)
T ss_dssp SCCCEESSHHHHHHHHTTSCCCCSCSSCC
T ss_pred CCCCccCCHHHHHHHHHHhCCCCCCCCCC
Confidence 46655544 334444442 234567776
No 237
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=22.75 E-value=23 Score=19.34 Aligned_cols=28 Identities=25% Similarity=0.357 Sum_probs=16.3
Q ss_pred eeeccCcCCCCccccCCccccCCCccccHHH
Q 029888 90 NISCPLSGKPITELAEPVRSVECKHIYEKNA 120 (186)
Q Consensus 90 ~l~CPI~~~~~~~l~dPV~s~~CgH~fck~~ 120 (186)
+-+||.|++++ .+.+=|. .=|..|-+.|
T Consensus 3 ~~~C~~C~k~V-y~~Ek~~--~~g~~~Hk~C 30 (31)
T 1zfo_A 3 NPNCARCGKIV-YPTEKVN--CLDKFWHKAC 30 (31)
T ss_dssp CCBCSSSCSBC-CGGGCCC--SSSSCCCGGG
T ss_pred CCcCCccCCEE-ecceeEE--ECCeEecccC
Confidence 45799999965 3334333 2356665543
No 238
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.65 E-value=83 Score=17.05 Aligned_cols=31 Identities=13% Similarity=0.312 Sum_probs=13.9
Q ss_pred CccccCCCccccH-HHHHHHHHh--cCCCCCCCC
Q 029888 106 PVRSVECKHIYEK-NAIQAYIKS--KNANARCPV 136 (186)
Q Consensus 106 PV~s~~CgH~fck-~~I~~~l~~--~~~~~~CPv 136 (186)
|+....||..|-. ..+...+.. ..+...||+
T Consensus 12 ~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~ 45 (46)
T 2em4_A 12 PYECIECGKAFKTKSSLICHRRSHTGEKPSGPSS 45 (46)
T ss_dssp SEECSSSCCEESSHHHHHHHHHHHSSSSCCCCCC
T ss_pred CcCCCCCCCccCCHHHHHHHHHhcCCCCCCCCCC
Confidence 3333344444433 334444432 335567775
No 239
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.10 E-value=35 Score=18.69 Aligned_cols=9 Identities=33% Similarity=0.637 Sum_probs=5.9
Q ss_pred eeeccCcCC
Q 029888 90 NISCPLSGK 98 (186)
Q Consensus 90 ~l~CPI~~~ 98 (186)
.+.|++|++
T Consensus 12 ~~~C~~C~k 20 (46)
T 2ytg_A 12 PFKCGECGK 20 (46)
T ss_dssp SEECTTTCC
T ss_pred CeECCCCCc
Confidence 466777765
No 240
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.93 E-value=85 Score=16.90 Aligned_cols=8 Identities=0% Similarity=-0.164 Sum_probs=5.1
Q ss_pred CCCCCCCC
Q 029888 129 NANARCPV 136 (186)
Q Consensus 129 ~~~~~CPv 136 (186)
.+...||+
T Consensus 38 ~kp~~C~~ 45 (46)
T 2eor_A 38 EKPSGPSS 45 (46)
T ss_dssp CCCSSSTT
T ss_pred CCCCCCCC
Confidence 45567775
No 241
>1x4v_A Hypothetical protein LOC130617; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.75 E-value=60 Score=21.01 Aligned_cols=28 Identities=11% Similarity=0.269 Sum_probs=21.2
Q ss_pred ceeeccC--cCCCCccccCCccccCCCccccHH
Q 029888 89 LNISCPL--SGKPITELAEPVRSVECKHIYEKN 119 (186)
Q Consensus 89 ~~l~CPI--~~~~~~~l~dPV~s~~CgH~fck~ 119 (186)
..-+|+. |.+. .| -|+....|+.+||..
T Consensus 11 ~~~~Cs~~~Ck~~--~l-l~f~C~~C~~~FC~~ 40 (63)
T 1x4v_A 11 FTNKCERAGCRQR--EM-MKLTCERCSRNFCIK 40 (63)
T ss_dssp TCCCCCSTTCCCC--CS-SCCBCSSSCCBCCHH
T ss_pred cCCCCCccCCCCC--Cc-cceECCCCCcccCcc
Confidence 3567999 9873 23 489877899999975
No 242
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.53 E-value=1e+02 Score=16.59 Aligned_cols=7 Identities=0% Similarity=-0.230 Sum_probs=4.0
Q ss_pred CCCCCCC
Q 029888 130 ANARCPV 136 (186)
Q Consensus 130 ~~~~CPv 136 (186)
+...|++
T Consensus 39 k~~~C~~ 45 (46)
T 2enf_A 39 KPSGPSS 45 (46)
T ss_dssp SCCCCSC
T ss_pred CCCCCCC
Confidence 4456765
No 243
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.33 E-value=1.3e+02 Score=18.60 Aligned_cols=34 Identities=9% Similarity=0.141 Sum_probs=24.0
Q ss_pred eeeccCcCCCCccccCCccccCCCccccHHHHHHHHH
Q 029888 90 NISCPLSGKPITELAEPVRSVECKHIYEKNAIQAYIK 126 (186)
Q Consensus 90 ~l~CPI~~~~~~~l~dPV~s~~CgH~fck~~I~~~l~ 126 (186)
-|+|..|.+++ -..++. ..=|..||+.+..+.+.
T Consensus 33 CF~C~~C~~~L--~~~~~~-~~~~~~yC~~cy~~~~~ 66 (72)
T 1x61_A 33 CFVCSTCRAQL--RGQHFY-AVERRAYCEGCYVATLE 66 (72)
T ss_dssp TCBCSSSCCBC--TTSCEE-ESSSCEEEHHHHHHHHH
T ss_pred CCcccccCCcC--CcCcCE-eeCCeEECHHHHHHHHc
Confidence 38899999743 123344 34578999999988776
No 244
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=21.26 E-value=55 Score=22.88 Aligned_cols=47 Identities=11% Similarity=0.078 Sum_probs=32.3
Q ss_pred eeeccCcCCCCccccCCccccCCCccccHHHHHHHHHhcCCCCCCCCCCCCCCccCC
Q 029888 90 NISCPLSGKPITELAEPVRSVECKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQVS 146 (186)
Q Consensus 90 ~l~CPI~~~~~~~l~dPV~s~~CgH~fck~~I~~~l~~~~~~~~CPv~GC~~~l~~~ 146 (186)
-|+|..|.+++ -..++. ..=|..||+.+-.+... .+|+. |++.|...
T Consensus 30 CF~C~~C~~~L--~~~~f~-~~~g~~yC~~cy~~~~~-----~~C~~--C~~~I~~~ 76 (126)
T 2xqn_T 30 HFCCFDCDSIL--AGEIYV-MVNDKPVCKPCYVKNHA-----VVCQG--CHNAIDPE 76 (126)
T ss_dssp GSBCTTTCCBC--TTSEEE-EETTEEEEHHHHHHHSC-----CBCTT--TCSBCCTT
T ss_pred CCCcCCCCCCC--CcCEEE-eECCEEechHHhCcCcC-----ccCcc--cCCcCCcC
Confidence 48999999753 122444 45688999998765433 57888 98888753
No 245
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.24 E-value=81 Score=17.00 Aligned_cols=31 Identities=6% Similarity=0.204 Sum_probs=13.3
Q ss_pred CccccCCCccccH-HHHHHHHHh--cCCCCCCCC
Q 029888 106 PVRSVECKHIYEK-NAIQAYIKS--KNANARCPV 136 (186)
Q Consensus 106 PV~s~~CgH~fck-~~I~~~l~~--~~~~~~CPv 136 (186)
|+....||..|-. ..+...++. ..+...||+
T Consensus 12 ~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~ 45 (45)
T 2epu_A 12 PFECTHCGKSFRAKGNLVTHQRIHTGEKSGPSSG 45 (45)
T ss_dssp SEEETTTTEEESSHHHHHHHHTTTSSCCCCCSCC
T ss_pred CccCCCCCCccCChHHHHHHHHHhCCCCCCCCCC
Confidence 3333344444433 334444432 234456664
No 246
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.97 E-value=1.1e+02 Score=16.58 Aligned_cols=8 Identities=0% Similarity=-0.164 Sum_probs=4.8
Q ss_pred CCCCCCCC
Q 029888 129 NANARCPV 136 (186)
Q Consensus 129 ~~~~~CPv 136 (186)
.+...|++
T Consensus 38 ~k~~~C~~ 45 (46)
T 2en9_A 38 EKPSGPSS 45 (46)
T ss_dssp SCCCSCCC
T ss_pred CCCCCCCC
Confidence 34566765
No 247
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.82 E-value=92 Score=16.85 Aligned_cols=31 Identities=6% Similarity=0.134 Sum_probs=13.4
Q ss_pred CccccCCCccccH-HHHHHHHHh--cCCCCCCCC
Q 029888 106 PVRSVECKHIYEK-NAIQAYIKS--KNANARCPV 136 (186)
Q Consensus 106 PV~s~~CgH~fck-~~I~~~l~~--~~~~~~CPv 136 (186)
|+....||..|-. ..+...+.. ..+...||+
T Consensus 12 ~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~ 45 (46)
T 2ytp_A 12 HYECSECGKAFARKSTLIMHQRIHTGEKPSGPSS 45 (46)
T ss_dssp CEECSSSCCEESSHHHHHHHHTTTSCCCCCSSCC
T ss_pred CeECCcCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence 3333344444433 334444432 234566764
No 248
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=20.66 E-value=98 Score=19.04 Aligned_cols=10 Identities=40% Similarity=0.982 Sum_probs=7.4
Q ss_pred CCCCCCCCCCCC
Q 029888 130 ANARCPVAGCPR 141 (186)
Q Consensus 130 ~~~~CPv~GC~~ 141 (186)
..+.||+ |+.
T Consensus 35 ~dw~CP~--Cg~ 44 (52)
T 1e8j_A 35 DDWACPV--CGA 44 (52)
T ss_dssp TTCCCSS--SCC
T ss_pred CCCcCCC--CCC
Confidence 4568999 764
No 249
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=20.60 E-value=79 Score=20.73 Aligned_cols=53 Identities=17% Similarity=0.357 Sum_probs=33.4
Q ss_pred ceeeccCcCCCCcc------------ccCCccccCCCccccH-HHHHHHHHh--cCCCCCCCCCCCCCCcc
Q 029888 89 LNISCPLSGKPITE------------LAEPVRSVECKHIYEK-NAIQAYIKS--KNANARCPVAGCPRKLQ 144 (186)
Q Consensus 89 ~~l~CPI~~~~~~~------------l~dPV~s~~CgH~fck-~~I~~~l~~--~~~~~~CPv~GC~~~l~ 144 (186)
..+.| .|.+.|.. -..|+....|+..|-. ..+...+.. ..+...|++ |...+.
T Consensus 9 k~~~C-~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~--C~~~f~ 76 (110)
T 2csh_A 9 KLYPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNI--CAKRFM 76 (110)
T ss_dssp CCEEC-TTSCEESSHHHHHHHHHHHSCCCSEECTTTSCEESSSHHHHHHHTTTCCCCCEECSS--SCCEES
T ss_pred CCEec-cCCCccCCHHHHHHHHHHcCCCcCccCCCCCcccCCHHHHHHHHHHcCCCCCeeCCC--Ccchhc
Confidence 46889 89873311 0256777789888865 445555543 234567999 987664
Done!