BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029889
(186 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5RFQ0|FCF1_PONAB rRNA-processing protein FCF1 homolog OS=Pongo abelii GN=FCF1 PE=2
SV=1
Length = 198
Score = 236 bits (601), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 120/171 (70%), Positives = 137/171 (80%), Gaps = 2/171 (1%)
Query: 1 MGKAKKAPKFAAMKKIITKRAIKNYKEDVLNPNKKDLTKEKM--PRNVPNVSSALFFTHN 58
MGK KK K+A MK++++ R + ++D L P KK+ R VP S LFF +N
Sbjct: 1 MGKQKKTRKYATMKRMLSLRDQRLKEKDRLKPKKKEKKDPSALKEREVPQHPSCLFFQYN 60
Query: 59 TALGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEKLGQKYRVA 118
T LGPPY +LVDTNFINFSI+ KLDL + MMDCLYAKC PCITDCVMAE+EKLGQKYRVA
Sbjct: 61 TQLGPPYHILVDTNFINFSIKAKLDLVQSMMDCLYAKCIPCITDCVMAEIEKLGQKYRVA 120
Query: 119 LRIAKDPRFERLPCTHKGTYADDCLVERVTQHKCFIVATCDRDLKRRIRKV 169
LRIAKDPRFERLPCTHKGTYADDCLV+RVTQHKC+IVAT DRDLKRRIRK+
Sbjct: 121 LRIAKDPRFERLPCTHKGTYADDCLVQRVTQHKCYIVATVDRDLKRRIRKI 171
>sp|Q9Y324|FCF1_HUMAN rRNA-processing protein FCF1 homolog OS=Homo sapiens GN=FCF1 PE=2
SV=1
Length = 198
Score = 236 bits (601), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 120/171 (70%), Positives = 137/171 (80%), Gaps = 2/171 (1%)
Query: 1 MGKAKKAPKFAAMKKIITKRAIKNYKEDVLNPNKKDLTKEKM--PRNVPNVSSALFFTHN 58
MGK KK K+A MK++++ R + ++D L P KK+ R VP S LFF +N
Sbjct: 1 MGKQKKTRKYATMKRMLSLRDQRLKEKDRLKPKKKEKKDPSALKEREVPQHPSCLFFQYN 60
Query: 59 TALGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEKLGQKYRVA 118
T LGPPY +LVDTNFINFSI+ KLDL + MMDCLYAKC PCITDCVMAE+EKLGQKYRVA
Sbjct: 61 TQLGPPYHILVDTNFINFSIKAKLDLVQSMMDCLYAKCIPCITDCVMAEIEKLGQKYRVA 120
Query: 119 LRIAKDPRFERLPCTHKGTYADDCLVERVTQHKCFIVATCDRDLKRRIRKV 169
LRIAKDPRFERLPCTHKGTYADDCLV+RVTQHKC+IVAT DRDLKRRIRK+
Sbjct: 121 LRIAKDPRFERLPCTHKGTYADDCLVQRVTQHKCYIVATVDRDLKRRIRKI 171
>sp|Q32PD0|FCF1_BOVIN rRNA-processing protein FCF1 homolog OS=Bos taurus GN=FCF1 PE=2
SV=1
Length = 198
Score = 236 bits (601), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 120/171 (70%), Positives = 137/171 (80%), Gaps = 2/171 (1%)
Query: 1 MGKAKKAPKFAAMKKIITKRAIKNYKEDVLNPNKKDLTKEKM--PRNVPNVSSALFFTHN 58
MGK KK K+A MK++++ R + ++D L P KK+ R VP S LFF +N
Sbjct: 1 MGKQKKTRKYATMKRMLSLRDQRLKEKDRLKPKKKEKKDPSALKEREVPQHPSCLFFQYN 60
Query: 59 TALGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEKLGQKYRVA 118
T LGPPY +LVDTNFINFSI+ KLDL + MMDCLYAKC PCITDCVMAE+EKLGQKYRVA
Sbjct: 61 TQLGPPYHILVDTNFINFSIKAKLDLVQSMMDCLYAKCIPCITDCVMAEIEKLGQKYRVA 120
Query: 119 LRIAKDPRFERLPCTHKGTYADDCLVERVTQHKCFIVATCDRDLKRRIRKV 169
LRIAKDPRFERLPCTHKGTYADDCLV+RVTQHKC+IVAT DRDLKRRIRK+
Sbjct: 121 LRIAKDPRFERLPCTHKGTYADDCLVQRVTQHKCYIVATVDRDLKRRIRKI 171
>sp|Q9CTH6|FCF1_MOUSE rRNA-processing protein FCF1 homolog OS=Mus musculus GN=Fcf1 PE=2
SV=2
Length = 198
Score = 233 bits (594), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 121/186 (65%), Positives = 143/186 (76%), Gaps = 3/186 (1%)
Query: 1 MGKAKKAPKFAAMKKIITKRAIKNYKEDVLNPNKKDLTKEKM--PRNVPNVSSALFFTHN 58
MGK KK K+A MK++++ R + ++D L P KK+ R VP S LFF +N
Sbjct: 1 MGKQKKTRKYATMKRMLSLRDERLKEKDRLKPKKKEKKDPSALKEREVPQHPSCLFFQYN 60
Query: 59 TALGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEKLGQKYRVA 118
T LGPPY +LVDTNFINFSI+ KLDL + MMDCLYAKC PCITDCVMAE+EKLGQK+RVA
Sbjct: 61 TQLGPPYHILVDTNFINFSIKAKLDLVQSMMDCLYAKCIPCITDCVMAEIEKLGQKFRVA 120
Query: 119 LRIAKDPRFERLPCTHKGTYADDCLVERVTQHKCFIVATCDRDLKRRIRKVRSTD-LYLG 177
LRIAKDPRF+RLPCTHKGTYADDCLV+RVTQHKC+IVAT DRDLKRRIRK+ +YL
Sbjct: 121 LRIAKDPRFDRLPCTHKGTYADDCLVQRVTQHKCYIVATVDRDLKRRIRKIPGVPIMYLS 180
Query: 178 TAFHDI 183
++I
Sbjct: 181 NHRYNI 186
>sp|Q05498|FCF1_YEAST rRNA-processing protein FCF1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=FCF1 PE=1 SV=1
Length = 189
Score = 218 bits (556), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 109/177 (61%), Positives = 135/177 (76%), Gaps = 8/177 (4%)
Query: 1 MGKAKKAPKFAAMKKIITKRAIKNYKEDVLNPNKKDL-TKE--KMPRNVPNVSSALFFTH 57
MGKAKK KF + KR + K+ L N++++ TKE ++ RN+P VSSALFF +
Sbjct: 1 MGKAKKTRKFG-----LVKRTLNTKKDQRLKKNQENIKTKEDPELTRNIPQVSSALFFQY 55
Query: 58 NTALGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEKLGQKYRV 117
N A+ PPY+VL+DTNFINFSIQ K+D+ +GMMDCL AKC P ITDCVMAELEKLG KYR+
Sbjct: 56 NQAIKPPYQVLIDTNFINFSIQKKVDIVRGMMDCLLAKCNPLITDCVMAELEKLGPKYRI 115
Query: 118 ALRIAKDPRFERLPCTHKGTYADDCLVERVTQHKCFIVATCDRDLKRRIRKVRSTDL 174
AL++A+DPR +RL C+HKGTYADDCLV RV QHKC+IVAT D LK+RIRK+ L
Sbjct: 116 ALKLARDPRIKRLSCSHKGTYADDCLVHRVLQHKCYIVATNDAGLKQRIRKIPGIPL 172
>sp|O13610|FCF1_SCHPO rRNA-processing protein fcf1 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=fcf1 PE=3 SV=1
Length = 192
Score = 213 bits (542), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 105/186 (56%), Positives = 138/186 (74%), Gaps = 1/186 (0%)
Query: 1 MGKAKKAPKFAAMKKIITKRAIKNYKEDVLNPNKKDLTKEKMPRNVPNVSSALFFTHNTA 60
MGKAK KFA +K++I + + K+D +K ++ R +P ++S LFF N +
Sbjct: 1 MGKAKTTRKFAQVKRVINLKDQRLQKKDQKKEKEKTTKNGELVREIPQMASNLFFQFNES 60
Query: 61 LGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEKLGQKYRVALR 120
LGPPY V++DTNFINF +Q K+DL +G+M CLYAK PCI+DCVMAELEKLG +YR+ALR
Sbjct: 61 LGPPYHVIIDTNFINFCLQQKIDLFEGLMTCLYAKTIPCISDCVMAELEKLGIRYRIALR 120
Query: 121 IAKDPRFERLPCTHKGTYADDCLVERVTQHKCFIVATCDRDLKRRIRKVRSTDLYLGTAF 180
IAKD RFERLPCTHKGTYADDC+V+RV QHKC++VAT D++LK+RIRK+ + L A
Sbjct: 121 IAKDERFERLPCTHKGTYADDCIVQRVMQHKCYLVATNDKNLKQRIRKIPGIPI-LSVAN 179
Query: 181 HDIGIQ 186
H I ++
Sbjct: 180 HKIRVE 185
>sp|Q55GM5|FCF1_DICDI rRNA-processing protein FCF1 homolog OS=Dictyostelium discoideum
GN=fcf1 PE=3 SV=1
Length = 194
Score = 189 bits (480), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 87/164 (53%), Positives = 123/164 (75%), Gaps = 1/164 (0%)
Query: 7 APKFAAMKKI-ITKRAIKNYKEDVLNPNKKDLTKEKMPRNVPNVSSALFFTHNTALGPPY 65
APK ++K+ T N ++ + ++D ++K+ + +S +FF++N AL PPY
Sbjct: 8 APKKVPLQKLNKTNPNFSNRQKQIQRSKQEDEHRKKLEEIPEDNTSHMFFSYNEALVPPY 67
Query: 66 RVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEKLGQKYRVALRIAKDP 125
V++DTNFINFSI +KLD+ +MDCLYAKC P I+DCV AE+E+LG K++VAL+I+KDP
Sbjct: 68 HVIIDTNFINFSISHKLDIIHSLMDCLYAKCIPYISDCVAAEIERLGSKFKVALKISKDP 127
Query: 126 RFERLPCTHKGTYADDCLVERVTQHKCFIVATCDRDLKRRIRKV 169
RF+RL C+HKGTYADDC++ R+T H+ FIVATCD DL+RRIRK+
Sbjct: 128 RFQRLTCSHKGTYADDCIINRITMHRMFIVATCDADLRRRIRKI 171
>sp|Q9BRU9|UTP23_HUMAN rRNA-processing protein UTP23 homolog OS=Homo sapiens GN=UTP23 PE=1
SV=2
Length = 249
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 58/118 (49%), Gaps = 4/118 (3%)
Query: 54 FFTHNTALGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEKLGQ 113
FF +N + PY++L+D F +++ ++ L + + L + C T CV+ ELE LG+
Sbjct: 15 FFRNNFGVREPYQILLDGTFCQAALRGRIQLREQLPRYLMGETQLCTTRCVLKELETLGK 74
Query: 114 KYRVALRIAKDPRFERLPCTHKGTYADDCL---VERVTQHKCFIVATCDRDLKRRIRK 168
A IA+ + P +CL VE H F VAT D++L +++K
Sbjct: 75 DLYGAKLIAQKCQVRNCPHFKNAVSGSECLLSMVEEGNPHHYF-VATQDQNLSVKVKK 131
>sp|Q08DU1|UTP23_BOVIN rRNA-processing protein UTP23 homolog OS=Bos taurus GN=UTP23 PE=2
SV=1
Length = 248
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 59/118 (50%), Gaps = 4/118 (3%)
Query: 54 FFTHNTALGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEKLGQ 113
FF +N + PY++L+D F +++ ++ L + + L A+ C T CV+ ELE LG+
Sbjct: 15 FFRNNFGVREPYQILLDGTFCQAALRGRIQLREQLPRYLMAETQLCTTRCVLKELETLGK 74
Query: 114 KYRVALRIAKDPRFERLPCTHKGTYADDCL---VERVTQHKCFIVATCDRDLKRRIRK 168
A IA+ + P +CL VE H F+ AT D++L +++K
Sbjct: 75 DLYGAKLIAQKCQVRNCPHFKNAVSGSECLLSMVEDGNPHHYFL-ATQDQNLSMKVKK 131
>sp|O74862|UTP23_SCHPO rRNA-processing protein utp23 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=utp23 PE=3 SV=1
Length = 260
Score = 54.7 bits (130), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 62/126 (49%), Gaps = 12/126 (9%)
Query: 53 LFFTHNTALG--PPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEK 110
L T+ G PY+VLVD +F+ Q K+D++ + + P IT C + +L
Sbjct: 12 LMHTYQLLFGFREPYQVLVDADFLKDLSQQKIDIQAALARTVQGAIKPMITQCCIRQLYS 71
Query: 111 LGQKYRVALRIAKDPRFERLPCTH--KGTYADDCLVERV-----TQHKCFIVATCDRDLK 163
+ + +RIAK FER C H + +C+ V +H+ ++VAT D +L+
Sbjct: 72 KSDELKQEIRIAKS--FERRRCGHIDEALSPSECIQSVVNINGRNKHR-YVVATQDPELR 128
Query: 164 RRIRKV 169
+ +R V
Sbjct: 129 QALRSV 134
>sp|Q9CX11|UTP23_MOUSE rRNA-processing protein UTP23 homolog OS=Mus musculus GN=Utp23 PE=2
SV=1
Length = 249
Score = 53.5 bits (127), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 60/124 (48%), Gaps = 4/124 (3%)
Query: 54 FFTHNTALGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEKLGQ 113
FF +N + PY++L+D F +++ ++ L + L + C T CV+ ELE LG+
Sbjct: 15 FFRNNFGVREPYQILLDGTFCQAALRGRIQLRDQLPRYLMGETQLCTTRCVLKELETLGK 74
Query: 114 KYRVALRIAKDPRFERLPCTHKGTYADDCLVERVTQ---HKCFIVATCDRDLKRRIRKVR 170
+ A IA+ + P +CL+ V + H F VAT D++L ++++
Sbjct: 75 ELYGAKLIAQKCQVRNCPHFKSPVSGSECLLSMVDEGNPHHYF-VATQDQNLSVKVKRTP 133
Query: 171 STDL 174
L
Sbjct: 134 GIPL 137
>sp|Q58716|VAPC4_METJA Putative ribonuclease VapC4 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=vapC4 PE=3 SV=1
Length = 131
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 57/110 (51%), Gaps = 10/110 (9%)
Query: 65 YRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEKL--------GQKYR 116
Y+++ DTNF+ + ++K++ + + L K I + ELE+L +K
Sbjct: 2 YKIVPDTNFLIYVFKHKINFDYEIERALNTKFEIVILSPIKEELERLLKSRDLKGKEKLA 61
Query: 117 VALRIAKDPRFERLPCTHKGTYADDCLVERVTQHKCFIVATCDRDLKRRI 166
V L +AK ++ + T YAD+ ++ +++ IVAT D++LK ++
Sbjct: 62 VNLALAKIKNYKLVDYT--ANYADEAILNYAKENENVIVATNDKELKEKL 109
>sp|Q12339|UTP23_YEAST rRNA-processing protein UTP23 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=UTP23 PE=1 SV=1
Length = 254
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 61/127 (48%), Gaps = 17/127 (13%)
Query: 53 LFFTHNTALGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEKLG 112
L ++H PY+VLVD + + +L G+ L A IT C + L +
Sbjct: 14 LVYSHTFKFREPYQVLVDNQLVLECNNSNFNLPSGLKRTLQADVKVMITQCCIQALYET- 72
Query: 113 QKYRVALRIAKDPRFERLPCTHKGTYAD-----DCL-----VERVTQHKCFIVATCDRDL 162
+ A+ +AK +FER C H ++ D +C+ + +H+ ++VA+ D DL
Sbjct: 73 -RNDGAINLAK--QFERRRCNH--SFKDPKSPAECIESVVNISGANKHR-YVVASQDIDL 126
Query: 163 KRRIRKV 169
+R++R V
Sbjct: 127 RRKLRTV 133
>sp|P38829|YHS2_YEAST MIP18 family protein YHR122W OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=YHR122W PE=1 SV=1
Length = 231
Score = 33.9 bits (76), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
Query: 89 MDCLYAKCTPCITDCVMAELEKLGQKYRVALRIAKDPRFERLPCTHKGTYADDCLVERVT 148
M + K TP IT C +A L LG RV L + PRF KGT+ + V +
Sbjct: 147 MAEVVIKITPTITHCSLATLIGLG--IRVRLERSLPPRFRITILLKKGTHDSENQVNKQL 204
Query: 149 QHKCFIVATCDRD 161
K + A C+ +
Sbjct: 205 NDKERVAAACENE 217
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.138 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,856,986
Number of Sequences: 539616
Number of extensions: 2602705
Number of successful extensions: 7431
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 7411
Number of HSP's gapped (non-prelim): 17
length of query: 186
length of database: 191,569,459
effective HSP length: 111
effective length of query: 75
effective length of database: 131,672,083
effective search space: 9875406225
effective search space used: 9875406225
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 57 (26.6 bits)