Query 029889
Match_columns 186
No_of_seqs 211 out of 505
Neff 5.5
Searched_HMMs 46136
Date Fri Mar 29 05:15:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029889.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029889hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3165 Predicted nucleic-acid 100.0 3.3E-76 7.2E-81 475.8 11.5 182 1-183 1-182 (195)
2 COG1412 Uncharacterized protei 100.0 1.6E-40 3.5E-45 262.5 9.8 128 55-184 1-130 (136)
3 KOG3164 Uncharacterized protei 100.0 3.1E-40 6.8E-45 277.1 10.9 127 52-180 13-142 (236)
4 PF04900 Fcf1: Fcf1; InterPro 100.0 3.1E-29 6.7E-34 187.4 7.9 92 89-180 1-94 (101)
5 smart00670 PINc Large family o 98.4 6.9E-07 1.5E-11 65.4 6.7 93 67-164 1-111 (111)
6 PF13638 PIN_4: PIN domain; PD 98.3 8.7E-06 1.9E-10 62.1 9.3 101 67-177 1-132 (133)
7 PRK13764 ATPase; Provisional 97.8 9.5E-05 2.1E-09 71.1 8.6 109 66-182 2-132 (602)
8 TIGR00305 probable toxin-antit 97.2 0.005 1.1E-07 46.1 10.0 96 66-163 1-112 (114)
9 PF01850 PIN: PIN domain; Int 96.9 0.0066 1.4E-07 44.2 7.9 99 67-167 1-120 (121)
10 TIGR00028 Mtu_PIN_fam Mycobact 96.7 0.0049 1.1E-07 46.6 5.9 104 67-175 2-137 (142)
11 PF13470 PIN_3: PIN domain 95.3 0.19 4.2E-06 37.2 8.8 46 66-111 1-47 (119)
12 PRK00124 hypothetical protein; 94.4 0.071 1.5E-06 43.2 4.5 74 104-180 12-95 (151)
13 COG1848 Predicted nucleic acid 93.8 0.33 7.2E-06 37.2 7.2 100 66-165 1-131 (140)
14 COG1569 Predicted nucleic acid 93.3 0.75 1.6E-05 37.0 8.5 95 66-163 2-116 (142)
15 COG2402 Predicted nucleic acid 92.9 0.66 1.4E-05 36.9 7.7 96 67-162 2-124 (135)
16 PRK13725 plasmid maintenance p 91.8 1.4 3.1E-05 34.0 8.2 99 67-174 4-128 (132)
17 PRK12496 hypothetical protein; 90.4 1.7 3.8E-05 35.3 7.8 98 66-180 3-118 (164)
18 PF05991 NYN_YacP: YacP-like N 89.9 0.86 1.9E-05 36.9 5.6 41 135-176 75-119 (166)
19 PF02639 DUF188: Uncharacteriz 89.1 0.97 2.1E-05 35.6 5.2 52 125-179 27-78 (130)
20 COG1487 VapC Predicted nucleic 86.0 4.7 0.0001 30.7 7.3 43 65-110 2-44 (133)
21 COG4956 Integral membrane prot 84.6 3.4 7.5E-05 37.5 6.7 80 97-178 187-281 (356)
22 COG2405 Predicted nucleic acid 83.6 6.7 0.00015 31.9 7.4 99 67-176 2-111 (157)
23 COG1656 Uncharacterized conser 81.7 2.8 6.1E-05 34.6 4.6 43 137-182 34-76 (165)
24 smart00500 SFM Splicing Factor 75.3 2.2 4.7E-05 27.8 1.8 23 157-180 1-23 (44)
25 PF14367 DUF4411: Domain of un 74.0 4.2 9.1E-05 32.6 3.5 45 68-112 2-51 (162)
26 PF01927 Mut7-C: Mut7-C RNAse 70.8 8.8 0.00019 30.3 4.7 37 138-177 29-65 (147)
27 COG1875 NYN ribonuclease and A 67.2 6.1 0.00013 36.9 3.4 98 66-173 4-141 (436)
28 PRK04358 hypothetical protein; 66.9 17 0.00036 31.3 5.8 55 109-176 144-198 (217)
29 cd06167 LabA_like LabA_like pr 66.5 54 0.0012 24.8 9.2 107 66-180 4-132 (149)
30 COG1671 Uncharacterized protei 64.8 11 0.00025 30.6 4.2 36 138-176 55-90 (150)
31 PF01936 NYN: NYN domain; Int 60.3 66 0.0014 23.9 7.6 104 66-178 3-126 (146)
32 PF13344 Hydrolase_6: Haloacid 60.3 22 0.00047 26.1 4.7 36 138-174 18-58 (101)
33 COG0695 GrxC Glutaredoxin and 48.6 25 0.00054 24.8 3.3 33 152-184 29-66 (80)
34 PF11977 RNase_Zc3h12a: Zc3h12 47.7 16 0.00034 28.9 2.4 23 137-160 88-110 (155)
35 COG4113 Predicted nucleic acid 47.5 1.4E+02 0.003 23.5 8.5 103 64-169 1-127 (134)
36 COG1855 ATPase (PilT family) [ 47.3 1.4E+02 0.003 29.1 8.8 82 96-179 31-133 (604)
37 PF02739 5_3_exonuc_N: 5'-3' e 47.0 20 0.00043 29.1 2.9 34 135-168 106-143 (169)
38 PF00462 Glutaredoxin: Glutare 47.0 18 0.0004 23.3 2.2 28 153-180 28-58 (60)
39 COG2082 CobH Precorrin isomera 46.2 72 0.0016 27.3 6.2 115 60-183 65-191 (210)
40 COG0117 RibD Pyrimidine deamin 44.8 24 0.00052 28.6 3.0 46 128-175 74-126 (146)
41 PF09713 A_thal_3526: Plant pr 43.3 52 0.0011 22.3 4.0 46 72-118 3-50 (54)
42 COG4634 Uncharacterized protei 41.6 52 0.0011 25.6 4.3 38 139-178 36-75 (113)
43 TIGR03875 RNA_lig_partner RNA 41.4 86 0.0019 26.8 5.9 55 109-176 140-194 (206)
44 cd00008 53EXOc 5'-3' exonuclea 41.3 74 0.0016 27.0 5.6 31 136-166 106-140 (240)
45 COG1439 Predicted nucleic acid 39.8 1.5E+02 0.0033 24.7 7.1 100 66-180 8-129 (177)
46 cd08568 GDPD_TmGDE_like Glycer 38.9 1.6E+02 0.0035 24.2 7.2 79 99-179 60-148 (226)
47 TIGR02181 GRX_bact Glutaredoxi 37.3 53 0.0011 22.2 3.5 32 153-184 28-62 (79)
48 PF10130 PIN_2: PIN domain; I 36.2 29 0.00062 27.2 2.2 43 68-113 1-44 (133)
49 PF02570 CbiC: Precorrin-8X me 34.2 2.2E+02 0.0047 24.1 7.3 116 60-183 56-182 (198)
50 cd03418 GRX_GRXb_1_3_like Glut 34.2 45 0.00098 22.0 2.7 32 153-184 29-64 (75)
51 cd03030 GRX_SH3BGR Glutaredoxi 32.7 47 0.001 24.3 2.7 31 154-184 36-73 (92)
52 COG0069 GltB Glutamate synthas 31.9 24 0.00053 33.7 1.3 14 153-166 425-438 (485)
53 cd08556 GDPD Glycerophosphodie 31.1 1.5E+02 0.0032 22.9 5.6 43 139-181 77-123 (189)
54 PRK09482 flap endonuclease-lik 31.0 67 0.0014 28.0 3.8 41 133-175 102-146 (256)
55 COG0337 AroB 3-dehydroquinate 30.8 30 0.00066 31.8 1.7 16 60-75 155-170 (360)
56 PF02254 TrkA_N: TrkA-N domain 29.9 1.4E+02 0.0031 21.3 5.0 37 141-178 11-48 (116)
57 COG5573 Predicted nucleic-acid 29.0 59 0.0013 26.1 2.9 42 66-109 5-51 (142)
58 PRK10824 glutaredoxin-4; Provi 28.9 1.1E+02 0.0024 23.4 4.3 32 153-184 49-83 (115)
59 PF02348 CTP_transf_3: Cytidyl 28.0 84 0.0018 25.1 3.7 44 138-182 25-71 (217)
60 TIGR01589 A_thal_3526 uncharac 27.9 1.4E+02 0.003 20.5 4.2 47 72-118 6-53 (57)
61 COG1212 KdsB CMP-2-keto-3-deox 27.7 82 0.0018 27.6 3.7 33 151-184 44-76 (247)
62 PTZ00062 glutaredoxin; Provisi 27.2 59 0.0013 27.3 2.7 32 154-185 148-182 (204)
63 cd03419 GRX_GRXh_1_2_like Glut 25.9 72 0.0016 21.3 2.6 25 160-184 39-66 (82)
64 smart00475 53EXOc 5'-3' exonuc 25.7 1E+02 0.0023 26.6 4.1 32 136-167 105-140 (259)
65 COG5611 Predicted nucleic-acid 25.0 3.5E+02 0.0076 21.4 8.4 99 67-168 2-126 (130)
66 cd03028 GRX_PICOT_like Glutare 24.8 77 0.0017 22.4 2.7 29 156-184 45-76 (90)
67 KOG1475 Ribosomal protein RPL1 24.8 55 0.0012 29.8 2.2 31 151-181 205-235 (363)
68 cd08563 GDPD_TtGDE_like Glycer 24.4 2.8E+02 0.0061 22.7 6.3 80 99-179 61-163 (230)
69 cd03031 GRX_GRX_like Glutaredo 24.0 74 0.0016 25.4 2.6 28 157-184 39-73 (147)
70 cd02066 GRX_family Glutaredoxi 24.0 83 0.0018 19.7 2.5 28 157-184 33-63 (72)
71 PF02877 PARP_reg: Poly(ADP-ri 23.9 40 0.00086 26.2 1.0 36 50-90 71-109 (133)
72 KOG4127 Renal dipeptidase [Pos 22.5 3.6E+02 0.0078 25.3 7.0 108 68-182 207-344 (419)
73 PF10087 DUF2325: Uncharacteri 21.9 1.4E+02 0.003 21.4 3.6 41 142-183 41-87 (97)
74 TIGR00365 monothiol glutaredox 21.8 95 0.0021 22.5 2.7 28 157-184 50-80 (97)
75 TIGR01457 HAD-SF-IIA-hyp2 HAD- 21.8 1.3E+02 0.0029 25.2 3.9 36 138-174 21-61 (249)
76 COG1911 RPL30 Ribosomal protei 21.4 1.1E+02 0.0023 23.4 2.9 40 141-180 26-70 (100)
77 PF13407 Peripla_BP_4: Peripla 21.1 2.1E+02 0.0045 23.0 4.9 41 139-180 44-89 (257)
78 PF12813 XPG_I_2: XPG domain c 21.1 1.1E+02 0.0023 26.3 3.3 25 137-162 28-52 (246)
79 PHA00439 exonuclease 21.0 91 0.002 27.8 2.8 32 134-165 116-152 (286)
80 cd08559 GDPD_periplasmic_GlpQ_ 20.7 3E+02 0.0064 23.9 6.0 42 139-180 148-196 (296)
81 PRK11440 putative hydrolase; P 20.7 1E+02 0.0023 24.6 2.9 20 160-180 38-57 (188)
82 PRK04358 hypothetical protein; 20.2 1.1E+02 0.0023 26.4 3.0 47 66-112 5-63 (217)
83 PRK13010 purU formyltetrahydro 20.1 2.6E+02 0.0056 24.7 5.5 42 138-180 105-150 (289)
No 1
>KOG3165 consensus Predicted nucleic-acid-binding protein, contains PIN domain [General function prediction only]
Probab=100.00 E-value=3.3e-76 Score=475.82 Aligned_cols=182 Identities=68% Similarity=1.089 Sum_probs=172.7
Q ss_pred CCccccchhhHHhhhccCccccccccccccCCCCcCCCCCCCCcccCCCchhhHHHHhhCCCCCeEEEeehHHHHHHHHc
Q 029889 1 MGKAKKAPKFAAMKKIITKRAIKNYKEDVLNPNKKDLTKEKMPRNVPNVSSALFFTHNTALGPPYRVLVDTNFINFSIQN 80 (186)
Q Consensus 1 mg~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fy~~n~gf~~PY~VLvDtNFl~~~~~~ 80 (186)
|||+|||||||.||+||+.+ .|++++++.+.++++.+.++.++++||+||++||+||+.++|||+||||||||++|+++
T Consensus 1 mgk~kktrk~~~vk~~i~~k-~~~~~~dr~k~k~K~d~~~~~~~e~Pq~~s~lffqyn~~L~PPy~vivDTNFINfsi~~ 79 (195)
T KOG3165|consen 1 MGKAKKTRKFAVVKRMIKTK-QRLKKKDRVKNKEKKDENELLTREVPQVPSALFFQYNTTLGPPYHVIVDTNFINFSIQN 79 (195)
T ss_pred CCcccchHHHHHHHHHHHHH-HHHHHHHhhhcccCCCchhhhcccCcCcchhHHHhcccccCCCeEEEEecchhhHHHHh
Confidence 99999999999999999987 88888887665555555566799999999999999999999999999999999999999
Q ss_pred CCChHHhHHHhhcccceeeecHHHHHHHHHhchhhHHHHHhccCCCceeeecCCCCCChHHHHHHHhhcCceEEEEecCH
Q 029889 81 KLDLEKGMMDCLYAKCTPCITDCVMAELEKLGQKYRVALRIAKDPRFERLPCTHKGTYADDCLVERVTQHKCFIVATCDR 160 (186)
Q Consensus 81 kldl~~~l~~~L~~k~~~~iT~CVi~ELekLg~k~r~Al~lak~~~~e~~kC~H~g~~addCI~~~v~~~~~yiVATnD~ 160 (186)
|+|++++||+||+++|+||||+|||+|||+||++|+.||++|+||+|+|++|.|+|+||||||+++|.+|+||||||||+
T Consensus 80 KiDi~~gmmdcl~Ak~~pcitDCVmaELEkLg~kyrvALri~kDpr~eRL~C~HKGTYADDClv~RV~qHkCYIVAT~D~ 159 (195)
T KOG3165|consen 80 KIDLFEGMMDCLYAKCIPCITDCVMAELEKLGQKYRVALRIAKDPRFERLPCTHKGTYADDCLVQRVTQHKCYIVATNDR 159 (195)
T ss_pred HHHHHHHHHHHHHhccccchhHHHHHHHHHhcchhhhhhhhhcCCcccccccccCCcchhhHHHHHHhhcceEEEEeccH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCccEEEEeecccc
Q 029889 161 DLKRRIRKVRSTDLYLGTAFHDI 183 (186)
Q Consensus 161 ~LrrrlRkipGVPiiyi~~~~~~ 183 (186)
+|++|+|+||||||||+.++...
T Consensus 160 dLK~RIrkIPGVPim~v~~hk~~ 182 (195)
T KOG3165|consen 160 DLKQRIRKIPGVPIMYVANHKYS 182 (195)
T ss_pred HHHHHHhcCCCCceEEEecceee
Confidence 99999999999999999988654
No 2
>COG1412 Uncharacterized proteins of PilT N-term./Vapc superfamily [General function prediction only]
Probab=100.00 E-value=1.6e-40 Score=262.52 Aligned_cols=128 Identities=43% Similarity=0.629 Sum_probs=119.2
Q ss_pred HHHhhCCCCCeEEEeehHHHHHHHHcCCChHHhHHHhhcccceeeecHHHHHHHHHhchhhHHHHH--hccCCCceeeec
Q 029889 55 FTHNTALGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEKLGQKYRVALR--IAKDPRFERLPC 132 (186)
Q Consensus 55 y~~n~gf~~PY~VLvDtNFl~~~~~~kldl~~~l~~~L~~k~~~~iT~CVi~ELekLg~k~r~Al~--lak~~~~e~~kC 132 (186)
|++|+||++||+||||||||+++.++++|+++.++++++++++|+||+||++||++|++.++.+++ +|.. .+++++|
T Consensus 1 ~~~~~~~~~~~~VlvDTNfl~~~~q~~vdi~~~l~r~l~~~~~~~Ip~~Vi~EL~~l~~~~~~~~r~~ia~~-~~er~~~ 79 (136)
T COG1412 1 FQDNFGFRKPYQVLVDTNFLLYPYQFKVDIFEELERLLGAKYKPAIPSCVIRELEKLKRKHRGKARIAIALK-YAERLEC 79 (136)
T ss_pred CccccccCCceEEEecchHHHHHHHccCCHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchHHHHHHHH-HhhccCc
Confidence 678999999999999999999999999999999999999999999999999999999998777776 4443 6889999
Q ss_pred CCCCCChHHHHHHHhhcCceEEEEecCHHHHHHHhhcCCccEEEEeeccccC
Q 029889 133 THKGTYADDCLVERVTQHKCFIVATCDRDLKRRIRKVRSTDLYLGTAFHDIG 184 (186)
Q Consensus 133 ~H~g~~addCI~~~v~~~~~yiVATnD~~LrrrlRkipGVPiiyi~~~~~~~ 184 (186)
.|.+.++||||.++|.+++||+|||||++|++|||+. |||+||+++++...
T Consensus 80 ~~~~~~aDe~i~~~a~~~~~~iVaTnD~eLk~rlr~~-GIPvi~lr~r~~~~ 130 (136)
T COG1412 80 IHKGRYADECLLEAALKHGRYIVATNDKELKRRLREN-GIPVITLRQRKLLI 130 (136)
T ss_pred cccCCChHHHHHHHHHHcCCEEEEeCCHHHHHHHHHc-CCCEEEEeCCeEEE
Confidence 9998899999999999999999999999999999999 99999999887654
No 3
>KOG3164 consensus Uncharacterized proteins of PilT N-term./Vapc superfamily [General function prediction only]
Probab=100.00 E-value=3.1e-40 Score=277.15 Aligned_cols=127 Identities=34% Similarity=0.529 Sum_probs=121.0
Q ss_pred hhHHHHhhCCCCCeEEEeehHHHHHHHHcCCChHHhHHHhhcccceeeecHHHHHHHHHhchhhHHHHHhccCCCceeee
Q 029889 52 ALFFTHNTALGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEKLGQKYRVALRIAKDPRFERLP 131 (186)
Q Consensus 52 ~~fy~~n~gf~~PY~VLvDtNFl~~~~~~kldl~~~l~~~L~~k~~~~iT~CVi~ELekLg~k~r~Al~lak~~~~e~~k 131 (186)
..||++|||||+|||||||++|+.++++.+|++.++|.++|.|.++++||+|||.|||.+|+.+.+|+.+|+ .|++++
T Consensus 13 l~ff~~~fgfRePYQVLvD~tF~~a~~~~~i~l~~~i~r~l~~~vKL~tTqCvikele~~g~~l~ga~~iAK--~fe~~~ 90 (236)
T KOG3164|consen 13 LKFFSVNFGFREPYQVLVDGTFCQAALQQKIGLDEQIKRYLQGEVKLMTTQCVIKELEELGKDLYGAKGIAK--QFEIRN 90 (236)
T ss_pred eeeeeeccCccCceEEEehhHHHHHHHHhhhChHHHHHHHhcCCCeeeehHHHHHHHHHhCcchhhhHHHHH--HHhHhc
Confidence 469999999999999999999999999999999999999999999999999999999999999999999999 799999
Q ss_pred cCCCCC-ChHHHHHHHhhcC--ceEEEEecCHHHHHHHhhcCCccEEEEeec
Q 029889 132 CTHKGT-YADDCLVERVTQH--KCFIVATCDRDLKRRIRKVRSTDLYLGTAF 180 (186)
Q Consensus 132 C~H~g~-~addCI~~~v~~~--~~yiVATnD~~LrrrlRkipGVPiiyi~~~ 180 (186)
|+|++. ++++||.++++.. +||+|||||.+|++.||.+||||+||+.+.
T Consensus 91 C~H~~~~s~seCl~svv~~~Nk~~YvvATQD~el~~kLr~~pgvPli~~~r~ 142 (236)
T KOG3164|consen 91 CNHKDARSPSECLRSVVRISNKHHYVVATQDQELRRKLRKEPGVPLIYLKRN 142 (236)
T ss_pred CCCCCCCCHHHHHHHHHhccCCceEEEecCCHHHHHHHhcCCCCceEEEecc
Confidence 999664 8999999999763 679999999999999999999999999875
No 4
>PF04900 Fcf1: Fcf1; InterPro: IPR006984 This family is comprises of uncharacterised eukaryotic proteins.
Probab=99.96 E-value=3.1e-29 Score=187.44 Aligned_cols=92 Identities=41% Similarity=0.675 Sum_probs=85.1
Q ss_pred HHhhcccceeeecHHHHHHHHHhchhhHHHHHhccCCCceeeecCCCCC--ChHHHHHHHhhcCceEEEEecCHHHHHHH
Q 029889 89 MDCLYAKCTPCITDCVMAELEKLGQKYRVALRIAKDPRFERLPCTHKGT--YADDCLVERVTQHKCFIVATCDRDLKRRI 166 (186)
Q Consensus 89 ~~~L~~k~~~~iT~CVi~ELekLg~k~r~Al~lak~~~~e~~kC~H~g~--~addCI~~~v~~~~~yiVATnD~~Lrrrl 166 (186)
+++|+|+++|+||+||++||++||+.++++..+|+...+++++|+|.+. +|||||++++.+++.|||||||++||++|
T Consensus 1 ~~~L~~~~~~~vt~cVl~EL~~L~~~~~~~~~~a~~~~~~~~~c~h~~~~~~addci~~~~~~~~~~~VaT~D~~Lr~~l 80 (101)
T PF04900_consen 1 KKLLGGKVKPYVTQCVLEELESLGKKFKGALRIAKRKALERRKCNHKETPGSADDCILDLAGKNNKYIVATQDKELRRRL 80 (101)
T ss_pred CccccCccEEEecHHHHHHHHHhcccccchhhhhhchhhHhhcCCCCCCCcCHHHHHHHHhccCCeEEEEecCHHHHHHH
Confidence 3689999999999999999999999999999999944499999999865 99999999999887799999999999999
Q ss_pred hhcCCccEEEEeec
Q 029889 167 RKVRSTDLYLGTAF 180 (186)
Q Consensus 167 RkipGVPiiyi~~~ 180 (186)
|++|||||||++++
T Consensus 81 r~~~GvPvi~l~~~ 94 (101)
T PF04900_consen 81 RKIPGVPVIYLRRN 94 (101)
T ss_pred hcCCCCCEEEEECC
Confidence 99999999999944
No 5
>smart00670 PINc Large family of predicted nucleotide-binding domains. From similarities to 5'-exonucleases, these domains are predicted to be RNases. PINc domains in nematode SMG-5 and yeast NMD4p are predicted to be involved in RNAi.
Probab=98.44 E-value=6.9e-07 Score=65.44 Aligned_cols=93 Identities=24% Similarity=0.261 Sum_probs=59.5
Q ss_pred EEeehHHHHHHHHcCCChHHhHHHhhcccceeeecHHHHHHHHHhch--hhHHHHHhcc----------CCC-ceeeecC
Q 029889 67 VLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEKLGQ--KYRVALRIAK----------DPR-FERLPCT 133 (186)
Q Consensus 67 VLvDtNFl~~~~~~kldl~~~l~~~L~~k~~~~iT~CVi~ELekLg~--k~r~Al~lak----------~~~-~e~~kC~ 133 (186)
+++|||+++..+.. ++.+ .+..++..++||.+|+.||..... .++.--.++. +.. +....+.
T Consensus 1 ~vlDTnvli~~~~~--~~~~---~~~~~~~~~~i~~~v~~El~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 75 (111)
T smart00670 1 VVLDTNVLIDGLIG--KALE---KLLEKKGEVYIPPTVLEELEYLAKLRSLKKLEELALEGKIKLKVLKEERKLEEEILE 75 (111)
T ss_pred CEeeHHHHHHHHHH--HHHH---HHHcCCCcEEECHHHHHHHHHHHHHHHHhhHHHHHHhcccccceeecCCCeEEEecc
Confidence 58999999998766 3333 334447889999999999999762 1111111111 000 1112233
Q ss_pred CCCC-----ChHHHHHHHhhcCceEEEEecCHHHHH
Q 029889 134 HKGT-----YADDCLVERVTQHKCFIVATCDRDLKR 164 (186)
Q Consensus 134 H~g~-----~addCI~~~v~~~~~yiVATnD~~Lrr 164 (186)
+.+. ..|.+|+..+...++.+++|+|.+|++
T Consensus 76 ~~~~~~~~~~~D~~il~~a~~~~~~~lvT~D~~l~~ 111 (111)
T smart00670 76 RLSLKLELLPNDALILATAKELGNVVLVTNDRDLRR 111 (111)
T ss_pred cCChhhcCCCChHHHHHHHHHCCCCEEEeCCcccCC
Confidence 3222 368899999988756899999998863
No 6
>PF13638 PIN_4: PIN domain; PDB: 2HWW_C 2HWX_A 2DOK_B 2HWY_B 2WP8_J.
Probab=98.25 E-value=8.7e-06 Score=62.11 Aligned_cols=101 Identities=17% Similarity=0.171 Sum_probs=60.9
Q ss_pred EEeehHHHHHHHHcCCChHHhHHHhhcccceeeecHHHHHHHHHhchh-----------hHHHHHhccCC---Cceeeec
Q 029889 67 VLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEKLGQK-----------YRVALRIAKDP---RFERLPC 132 (186)
Q Consensus 67 VLvDtNFl~~~~~~kldl~~~l~~~L~~k~~~~iT~CVi~ELekLg~k-----------~r~Al~lak~~---~~e~~kC 132 (186)
+++|||+|+... +.+.++ +...++||.+|+.||..+... .+.|.++.... ....+..
T Consensus 1 ~V~DTnvll~~~-------~~l~~~--~~~~ivIP~~Vl~ELd~lk~~~~~~~~~~~~~ar~~~~~l~~~~~~~~~~i~~ 71 (133)
T PF13638_consen 1 YVLDTNVLLHHP-------DLLEKL--EQNKIVIPLTVLEELDRLKKSSRDRDRELRKRAREAIRWLEKLLKRGSRSIRV 71 (133)
T ss_dssp EEE-HHHHHHHH-------HHHHHH--SSSEEEEEHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHCT-TTEEE
T ss_pred CEeehhHHhCCh-------HHHhcc--ccCEEEechHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHhcCCCeEec
Confidence 589999999772 334433 788999999999999888432 23344333210 0001111
Q ss_pred CCC-----------CCChHHHHHHHhhc------CceEEEEecCHHHHHHHhhcCCccEEEE
Q 029889 133 THK-----------GTYADDCLVERVTQ------HKCFIVATCDRDLKRRIRKVRSTDLYLG 177 (186)
Q Consensus 133 ~H~-----------g~~addCI~~~v~~------~~~yiVATnD~~LrrrlRkipGVPiiyi 177 (186)
... ....|+.|++.+.. ....++.|+|..|+.+++.. |+|...+
T Consensus 72 q~~~~~~~~~~~~~~~~~D~~Il~~a~~~~~~~~~~~vvLvT~D~~l~~~A~~~-gi~~~~~ 132 (133)
T PF13638_consen 72 QTSDEEIDEDLNLDAQRNDDRILNCALYLQEENPGRKVVLVTNDKNLRLKARAE-GIPAVSY 132 (133)
T ss_dssp CTTTS-EES--S----HHHHHHHHHHHHHHHHCGCEEEEEEE--HHHHHHHHHT-T--EE--
T ss_pred chhhhhcchhhhccccccHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHHHHhhc-ccccccC
Confidence 110 12678999988743 23579999999999999998 9998864
No 7
>PRK13764 ATPase; Provisional
Probab=97.78 E-value=9.5e-05 Score=71.14 Aligned_cols=109 Identities=19% Similarity=0.131 Sum_probs=71.5
Q ss_pred EEEeehHHHHHHHHcCCChHHhHHHhhcccceeeecHHHHHHHHHhchh----hHHHHHhccC---------CCceeeec
Q 029889 66 RVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEKLGQK----YRVALRIAKD---------PRFERLPC 132 (186)
Q Consensus 66 ~VLvDtNFl~~~~~~kldl~~~l~~~L~~k~~~~iT~CVi~ELekLg~k----~r~Al~lak~---------~~~e~~kC 132 (186)
.+++|||.|+.-- +.+.+..-+.-...++||.-|++||+.+... =+.|++.++. ..++.. .
T Consensus 2 ~yVlDTSVIIDGr-----i~~~i~~g~~~~~~IiIP~~Vl~ELe~~A~~~r~~G~~gLeeL~~L~~l~~~g~i~ie~~-~ 75 (602)
T PRK13764 2 KIVPDTSVVIDGR-----VSELIEKGEYIGGTIIIPEAVVAELEAQANQGREIGFSGLEELKKLRELAEEGLIELEFV-G 75 (602)
T ss_pred eEEccceEEEech-----HHHHHHcCCccCCEEEeehHHHHHHHHHhhccchhhHHHHHHHHHHHHhhccCceEEEEe-c
Confidence 4677777775540 1122221111245699999999999999542 1234433331 011111 1
Q ss_pred CCC---------CCChHHHHHHHhhcCceEEEEecCHHHHHHHhhcCCccEEEEeeccc
Q 029889 133 THK---------GTYADDCLVERVTQHKCFIVATCDRDLKRRIRKVRSTDLYLGTAFHD 182 (186)
Q Consensus 133 ~H~---------g~~addCI~~~v~~~~~yiVATnD~~LrrrlRkipGVPiiyi~~~~~ 182 (186)
.+. +...|+-|++++.+++ .++.|+|..|+..++.. |||++|+++.+.
T Consensus 76 ~~p~~~~~~~~~~gevD~~I~~~A~~~~-~~lvT~D~~l~~~A~~~-GI~V~~l~~~~~ 132 (602)
T PRK13764 76 ERPTLEQIKLAKGGEIDALIREVAKELG-ATLVTSDRVQAEVARAK-GIDVIYLKPERE 132 (602)
T ss_pred cccchhhcccccCCCHHHHHHHHHHHcC-CEEEeCCHHHHHHHHHc-CCEEEEeCCCCC
Confidence 111 1368999999999887 59999999999999999 999999998764
No 8
>TIGR00305 probable toxin-antitoxin system toxin component, PIN family. This uncharacterized protein family, part of the PIN domain superfamily, is restricted to bacteria and archaea. A comprehensive in silico study of toxin-antitoxin systems by Makarova, et al. (2009) finds evidence this family represents the toxin-like component of one class of type 2 toxin-antitoxin systems.
Probab=97.22 E-value=0.005 Score=46.15 Aligned_cols=96 Identities=18% Similarity=0.103 Sum_probs=60.4
Q ss_pred EEEeehHHHHHHHHcCCChHHhHH-HhhcccceeeecHHHHHHH-HHhc-hhh---------HHHHHhccCCCceeeecC
Q 029889 66 RVLVDTNFINFSIQNKLDLEKGMM-DCLYAKCTPCITDCVMAEL-EKLG-QKY---------RVALRIAKDPRFERLPCT 133 (186)
Q Consensus 66 ~VLvDtNFl~~~~~~kldl~~~l~-~~L~~k~~~~iT~CVi~EL-ekLg-~k~---------r~Al~lak~~~~e~~kC~ 133 (186)
+|++|||.++.++-.+-. ...+. -+..+.+.++++..++.|+ +.+. +++ +..+..... .++...-.
T Consensus 1 rvvlDTNVli~all~~~~-~~~l~~~~~~~~~~~~~s~~~l~E~~~~l~~~~~~~~~~~~~~~~~l~~l~~-~~~~~~~~ 78 (114)
T TIGR00305 1 KVVIDTNVWISALIWKGL-PGKLIKLIIDNKIVNCTSVEILQEVEFVLLYPKLQKYFALETILEILLLLGE-KSTIINPN 78 (114)
T ss_pred CEEEEhHHHHHHHhCCCC-HHHHHHHHHhCCEEEEECHHHHHHHHHHHhhHhhhhhcCHHHHHHHHHHHHH-hcEEecCC
Confidence 489999999998876654 33343 3466889999999999999 4443 111 112221111 22222211
Q ss_pred C----CCCChHHHHHHHhhcCceEEEEecCHHHH
Q 029889 134 H----KGTYADDCLVERVTQHKCFIVATCDRDLK 163 (186)
Q Consensus 134 H----~g~~addCI~~~v~~~~~yiVATnD~~Lr 163 (186)
. ..-+.|+.+++.+...++=++.|.|++|-
T Consensus 79 ~~~~~~~D~~D~~~l~~A~~~~ad~iVT~Dkdll 112 (114)
T TIGR00305 79 PEFDDCRDKKDNKFLNTAYASKANALITGDTDLL 112 (114)
T ss_pred CCCCCCCCchhHHHHHHHHhcCCCEEEECCHHHh
Confidence 1 02256888888888776657779999874
No 9
>PF01850 PIN: PIN domain; InterPro: IPR002716 The PilT protein, N-terminal domain (PIN) is a compact domain of about 100 amino acids. The domain has two nearly invariant aspartates and forms a coiled-coil with other monomer units to polymerise a pilus fibre []. The function of the PIN domain is unknown but a role in signalling appears likely given the presence of this domain in some bacterial plasmid stability proteins and Dis3 from yeast that is implicated in mitotic control [].; PDB: 3TND_G 2H1O_B 2BSQ_B 2H1C_A 2FE1_A 3ZVK_C 1V8P_F 1V8O_C 3H87_A 1O4W_A ....
Probab=96.91 E-value=0.0066 Score=44.18 Aligned_cols=99 Identities=22% Similarity=0.283 Sum_probs=62.2
Q ss_pred EEeehHHHHHHHHcCCChHHhHHHhhcccceeeecHHHHHHHHHhchh-----h---HHHHHhccCCCceeeecCCC---
Q 029889 67 VLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEKLGQK-----Y---RVALRIAKDPRFERLPCTHK--- 135 (186)
Q Consensus 67 VLvDtNFl~~~~~~kldl~~~l~~~L~~k~~~~iT~CVi~ELekLg~k-----~---r~Al~lak~~~~e~~kC~H~--- 135 (186)
|+||||++...+ ..=...+...+++.....++++.-++.|+...-.+ . ....... .+.++..+.+..
T Consensus 1 i~lDTsili~~~-~~~~~~~~~~~~~~~~~~~~is~~~~~E~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~ 78 (121)
T PF01850_consen 1 ILLDTSILIALL-RDEENHEKARELLERAIEIVISSLVLAELLYVLRRRSKQQKAIALLELLIL-LSNFNILPITSEVFE 78 (121)
T ss_dssp EEE-HHHHHHHH-SHSCHHHHHHHHHHTHSEEEEEHHHHHHHHHHHHHSHCHHHHHHHHHHHHH-HCTSEEEEBCHHHHH
T ss_pred EEEcChhhcccc-CCChhHHHHHHHHhcCCCEEEcHHHHHHHHHHhhhccccchhhhHHHHHHH-HhhhccccchhHHHH
Confidence 799999999998 43444455666666558899999999999776433 1 1111112 235666665421
Q ss_pred ---------CCChHHHHH-HHhhcCceEEEEecCHHHHHHHh
Q 029889 136 ---------GTYADDCLV-ERVTQHKCFIVATCDRDLKRRIR 167 (186)
Q Consensus 136 ---------g~~addCI~-~~v~~~~~yiVATnD~~LrrrlR 167 (186)
+.+..||+. ..+..+++-.|.|+|+++++-.+
T Consensus 79 ~~~~~~~~~~~~~~Da~~~a~A~~~~~~~v~T~D~~f~~~a~ 120 (121)
T PF01850_consen 79 RAAELMRKYGLDFADALIAATAKENGAPLVVTFDKDFRKVAK 120 (121)
T ss_dssp HHHHHHHHHHSSHHHHHHHHHHHHHT-EEE-ESSHHHHHHHC
T ss_pred HHHHHHHhccCChhHHHHHHHHHHcCCEEEEECCcCHHhccC
Confidence 135556655 55666787788899999887544
No 10
>TIGR00028 Mtu_PIN_fam Mycobacterium tuberculosis PIN domain family. Members of this protein consist almost entirely of a PIN (PilT N terminus) domain (see Pfam pfam01850). This family was originally defined a set of twelve closely related paralogs found in Mycobacterium tuberculosis. Two more are now found in Synechococcus sp. WH8102. The specific function is unknown but may be in signal transduction.
Probab=96.68 E-value=0.0049 Score=46.55 Aligned_cols=104 Identities=16% Similarity=0.150 Sum_probs=56.5
Q ss_pred EEeehHHHHHHHHcCCChHHhHHHhhc---ccceeeecHHHHHHHHHh-ch-----------hhHHHHH-hccCCCceee
Q 029889 67 VLVDTNFINFSIQNKLDLEKGMMDCLY---AKCTPCITDCVMAELEKL-GQ-----------KYRVALR-IAKDPRFERL 130 (186)
Q Consensus 67 VLvDtNFl~~~~~~kldl~~~l~~~L~---~k~~~~iT~CVi~ELekL-g~-----------k~r~Al~-lak~~~~e~~ 130 (186)
+++|||++++.+...=...+...+.+. +...++++.-++.|+... .+ .....++ +...+.+...
T Consensus 2 i~lDTnvli~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vl~E~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 81 (142)
T TIGR00028 2 LLLDVNVLLAAVNRDHPHHDAARAWLDRFAAGGDWATCPLTLAGFVRLLTNPRVLPAPLSPAEAIAVVAAFLATPRHRLL 81 (142)
T ss_pred ccchhhHHHHhcCCCCcchHHHHHHHHHHhcCCCceechhhhhhheeeeccCCcCCCCCCHHHHHHHHHHHHhCCCeeec
Confidence 689999999887644322222333332 445577888999998553 11 1112221 1111112111
Q ss_pred ec--------------CCC-CC-ChHHHHHHHhhcCceEEEEecCHHHHHHHhhcCCccEE
Q 029889 131 PC--------------THK-GT-YADDCLVERVTQHKCFIVATCDRDLKRRIRKVRSTDLY 175 (186)
Q Consensus 131 kC--------------~H~-g~-~addCI~~~v~~~~~yiVATnD~~LrrrlRkipGVPii 175 (186)
.- ... +. .+|..|+..+..+++ .+.|.|+++ ...+|++++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~D~~i~a~A~~~~~-~lvT~D~~f----~~~~~~~i~ 137 (142)
T TIGR00028 82 WPGPRHLAVLRGLADPVIAGGRLVTDAHLAALAREHGA-ELVTFDRGF----ARFAGIRWR 137 (142)
T ss_pred CCCcchHHHHHHHHHHhccCCCCchHHHHHHHHHHcCC-EEEecCCCc----cccCCCeee
Confidence 11 001 12 455556677778875 555999865 456788775
No 11
>PF13470 PIN_3: PIN domain
Probab=95.31 E-value=0.19 Score=37.17 Aligned_cols=46 Identities=22% Similarity=0.351 Sum_probs=35.6
Q ss_pred EEEeehHHHHHHHHcCCChHHhHHHh-hcccceeeecHHHHHHHHHh
Q 029889 66 RVLVDTNFINFSIQNKLDLEKGMMDC-LYAKCTPCITDCVMAELEKL 111 (186)
Q Consensus 66 ~VLvDtNFl~~~~~~kldl~~~l~~~-L~~k~~~~iT~CVi~ELekL 111 (186)
+|++|||.++.++-..=.....+.+. ..|.+.++++.-++.|++..
T Consensus 1 RVvlDTNVli~~ll~~~~~~~~l~~~~~~~~~~~~~s~~~l~E~~~v 47 (119)
T PF13470_consen 1 RVVLDTNVLISALLSREPAARKLLDLAEDGRIELYISPEILDELERV 47 (119)
T ss_pred CEEEEechhHHHHhCCCchHHHHHHHHHcCCCeEEecHHHHHHHHHH
Confidence 58999999999877554334444444 46889999999999999855
No 12
>PRK00124 hypothetical protein; Validated
Probab=94.35 E-value=0.071 Score=43.21 Aligned_cols=74 Identities=14% Similarity=0.118 Sum_probs=50.9
Q ss_pred HHHHHHHhchhhHHHHHhcc-------CCC---ceeeecCCCCCChHHHHHHHhhcCceEEEEecCHHHHHHHhhcCCcc
Q 029889 104 VMAELEKLGQKYRVALRIAK-------DPR---FERLPCTHKGTYADDCLVERVTQHKCFIVATCDRDLKRRIRKVRSTD 173 (186)
Q Consensus 104 Vi~ELekLg~k~r~Al~lak-------~~~---~e~~kC~H~g~~addCI~~~v~~~~~yiVATnD~~LrrrlRkipGVP 173 (186)
|.+|+.+++.++..-+-+.- .|. .+.+-.+.....||+-|++.+.+.. +|.|||-.|-.++-.. |+-
T Consensus 12 Vk~~i~r~a~r~~i~v~~Vas~n~~~~~~~~~~v~~v~V~~g~D~AD~~Iv~~~~~gD--iVIT~Di~LAa~~l~K-ga~ 88 (151)
T PRK00124 12 VKDIIIRVAERHGIPVTLVASFNHFLRVPYSPFIRTVYVDAGFDAADNEIVQLAEKGD--IVITQDYGLAALALEK-GAI 88 (151)
T ss_pred HHHHHHHHHHHHCCeEEEEEeCCcccCCCCCCceEEEEeCCCCChHHHHHHHhCCCCC--EEEeCCHHHHHHHHHC-CCE
Confidence 88888888876543322211 111 2222233222379999999998886 9999999999999999 999
Q ss_pred EEEEeec
Q 029889 174 LYLGTAF 180 (186)
Q Consensus 174 iiyi~~~ 180 (186)
+|.-++.
T Consensus 89 vl~prG~ 95 (151)
T PRK00124 89 VLNPRGY 95 (151)
T ss_pred EECCCCc
Confidence 8865543
No 13
>COG1848 Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]
Probab=93.82 E-value=0.33 Score=37.20 Aligned_cols=100 Identities=20% Similarity=0.283 Sum_probs=58.8
Q ss_pred EEEeehHHHHHHHHcCC----ChHHhHHHhhcccceeeecHHHHHHHHHhchh------hHHHHHhc----cCCCc----
Q 029889 66 RVLVDTNFINFSIQNKL----DLEKGMMDCLYAKCTPCITDCVMAELEKLGQK------YRVALRIA----KDPRF---- 127 (186)
Q Consensus 66 ~VLvDtNFl~~~~~~kl----dl~~~l~~~L~~k~~~~iT~CVi~ELekLg~k------~r~Al~la----k~~~~---- 127 (186)
.+++|||++.+.+-..- .-.+.+.....+....+++.-|+.|+-.+-.+ ...+.... -.+.+
T Consensus 1 ~i~~Dtnvlv~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~v~~e~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (140)
T COG1848 1 MIVIDTNVLVYALFRDHPHHDRARELLERLEAGDIRVYTPELVLAELLRVLTRRRRPLSLAEAIEVVAALLALPRFELLL 80 (140)
T ss_pred CeeeehHHHHHHHHccChhHHHHHHHHHHHhcCCCceeecHHHHHHHHHHHhhcccCcCHHHHHHHHHHHHHHHHHHHHH
Confidence 37899999999976653 23455666666677899999999998666322 11111111 00011
Q ss_pred eeee--cC----------CCCCChHHHHH-HHhhcCceEEEEecCHHHHHH
Q 029889 128 ERLP--CT----------HKGTYADDCLV-ERVTQHKCFIVATCDRDLKRR 165 (186)
Q Consensus 128 e~~k--C~----------H~g~~addCI~-~~v~~~~~yiVATnD~~Lrrr 165 (186)
+..+ .. +.+..+.|++. ..+..++.--++|.|+++++-
T Consensus 81 ~~~~~~~~~~~~a~~~~~~~~l~~~DAl~lA~a~~~gi~~i~T~D~df~~~ 131 (140)
T COG1848 81 DILEVTAEAYRLAAALALKYGLLPNDALLLATAKRYGIKAIATFDEDFARV 131 (140)
T ss_pred hcccchHHHHHHHHHHHHHcCCCCcHHHHHHHHHHcCcceeeecchhhhhc
Confidence 1111 10 11223566666 455556567999999988763
No 14
>COG1569 Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]
Probab=93.28 E-value=0.75 Score=37.01 Aligned_cols=95 Identities=25% Similarity=0.276 Sum_probs=63.4
Q ss_pred EEEeehHHHHHHHHcCCChHHhHHHhhc-ccceeeecHHHHHHHH-Hhc-hhhHH------------HH-----HhccCC
Q 029889 66 RVLVDTNFINFSIQNKLDLEKGMMDCLY-AKCTPCITDCVMAELE-KLG-QKYRV------------AL-----RIAKDP 125 (186)
Q Consensus 66 ~VLvDtNFl~~~~~~kldl~~~l~~~L~-~k~~~~iT~CVi~ELe-kLg-~k~r~------------Al-----~lak~~ 125 (186)
+|++|||.++.++=.+=.+...+.+++. .+...+++.-.+.||+ .++ ++++. ++ .++-.|
T Consensus 2 kVViDTNV~isaLi~p~Gl~~~l~~ll~~~~i~n~tS~eil~El~~v~~~pKl~k~l~~e~~~~~v~~l~~~~~~i~I~p 81 (142)
T COG1569 2 KVVIDTNVWISALISPGGLPGELISLLIKEKIENYTSEEILDELEEVLSYPKLKKYLPLEVLGELVLVLFESVSLIAINP 81 (142)
T ss_pred eEEEEhhHHHHHHhCCCCCcHHHHHHHhhCceEEEecHHHHHHHHHHHhhHHHHhhcchHHHHHHHHHHHHhheeEeecc
Confidence 7999999999998777666666666665 4678899999999994 333 22111 11 111223
Q ss_pred CceeeecCCCCCChHHHHHHHhhcCceEEEEecCHHHH
Q 029889 126 RFERLPCTHKGTYADDCLVERVTQHKCFIVATCDRDLK 163 (186)
Q Consensus 126 ~~e~~kC~H~g~~addCI~~~v~~~~~yiVATnD~~Lr 163 (186)
.++...|.- .-|.-++++|-..+..++.|-|++|-
T Consensus 82 ~~~f~~~RD---p~Dn~~L~~A~~~kA~~lvTgD~dLL 116 (142)
T COG1569 82 LEKFNICRD---PKDNKLLALAYESKADYLVTGDQDLL 116 (142)
T ss_pred cccccccCC---chHHHHHHHHHhccCCEEEEcchhhh
Confidence 333233532 45778899998877778889999874
No 15
>COG2402 Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]
Probab=92.94 E-value=0.66 Score=36.87 Aligned_cols=96 Identities=17% Similarity=0.137 Sum_probs=55.6
Q ss_pred EEeehHHHHHHHHcCCChHHhHHHhhcccc-----eeeecHHHHHHHHHhchh-hHHHH----HhccCCCceeeecC---
Q 029889 67 VLVDTNFINFSIQNKLDLEKGMMDCLYAKC-----TPCITDCVMAELEKLGQK-YRVAL----RIAKDPRFERLPCT--- 133 (186)
Q Consensus 67 VLvDtNFl~~~~~~kldl~~~l~~~L~~k~-----~~~iT~CVi~ELekLg~k-~r~Al----~lak~~~~e~~kC~--- 133 (186)
|||||||+.+....+-.--+.-..++.+.. .+++++|++.|..-|.++ +..|. ..+....+.+..|.
T Consensus 2 v~vDT~~~~a~~~~~d~~H~~a~~~~~~~~~~~~~~~~~~~~v~~e~~~l~k~r~~~aa~~l~~~i~~~~~~~~~~~t~~ 81 (135)
T COG2402 2 VLVDTSVLLALFDKRDKNHEAAVQLFVSLADNKFRRLVVSDHVLDETLTLLKKRVVDAAAFLLEALEEGALEIFESVTEE 81 (135)
T ss_pred EEEechHHHHHHhchhhhHHHHHHHHhhcccCccceEEEeeeeHHHHHHHHHHhhhhHHHHHHHHhccCceEEEecccHH
Confidence 899999998876555433333333444333 689999999999988653 22222 22222345555553
Q ss_pred -------------CCCCChHHHHH-HHhhcCceEEEEecCHHH
Q 029889 134 -------------HKGTYADDCLV-ERVTQHKCFIVATCDRDL 162 (186)
Q Consensus 134 -------------H~g~~addCI~-~~v~~~~~yiVATnD~~L 162 (186)
|.+-+=+||+. -++.+.++-=+-|.|.+.
T Consensus 82 ~~~~a~~~~k~~d~~~~df~Da~~~ala~k~g~~~ilSfD~dF 124 (135)
T COG2402 82 LEEAAEAVFKRQDDLGLDFVDATSVALAEKLGILKILSFDSDF 124 (135)
T ss_pred HHHHHHHHHHhhcccCCCHHHHHHHHHHHHcCCCcEEEecccc
Confidence 23334445554 445556655566777653
No 16
>PRK13725 plasmid maintenance protein; Provisional
Probab=91.78 E-value=1.4 Score=34.04 Aligned_cols=99 Identities=22% Similarity=0.360 Sum_probs=54.6
Q ss_pred EEeehHHHHHHHHcCCChHHhHHHhhcccceeeecHHHHHHHHHhch------hhHHHHH-hccCCCceeeecC------
Q 029889 67 VLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEKLGQ------KYRVALR-IAKDPRFERLPCT------ 133 (186)
Q Consensus 67 VLvDtNFl~~~~~~kldl~~~l~~~L~~k~~~~iT~CVi~ELekLg~------k~r~Al~-lak~~~~e~~kC~------ 133 (186)
.|+|||.+...++.+-+......+ . ..-.++|+.-++.||..=-. +....++ +.. +|+.++-+
T Consensus 4 yLLDTni~i~~~~~~~~~v~~~~~-~-~~~~~~iS~It~~EL~~G~~~~~~~~~~~~~~~~~l~--~~~ilp~d~~~a~~ 79 (132)
T PRK13725 4 FMLDTNICIFTIKNKPEHVRERFN-L-NTGRMCISSVTLMELIYGAEKSQMPERNLAVIEGFVS--RLEVLDYDTAAATH 79 (132)
T ss_pred hhhhHHHHHHHHhCCcHHHHHHHh-C-CCcceeehHHHHHHHHHHHHhCCCHHHHHHHHHHHHh--cCccCCCCHHHHHH
Confidence 599999999998866432222222 1 23458899888999964211 1111111 122 34444332
Q ss_pred ---------CCC--CChHHHHH-HHhhcCceEEEEecC-HHHHHHHhhcCCccE
Q 029889 134 ---------HKG--TYADDCLV-ERVTQHKCFIVATCD-RDLKRRIRKVRSTDL 174 (186)
Q Consensus 134 ---------H~g--~~addCI~-~~v~~~~~yiVATnD-~~LrrrlRkipGVPi 174 (186)
..| ....|+++ ..+..|+ +.|.|+| +++ ..+||+-+
T Consensus 80 ~a~i~~~l~~~g~~i~~~D~lIAA~Al~~~-~~LvT~N~kdF----~~i~gl~~ 128 (132)
T PRK13725 80 TGQIRAELARQGRPVGPFDQMIAGHARSRG-LIVVTNNTREF----ERVPGIRI 128 (132)
T ss_pred HHHHHHHHHHcCCCCChhHHHHHHHHHHCC-CEEEECCHHHH----hcCCCCcc
Confidence 112 23345554 5667777 6888986 454 35677654
No 17
>PRK12496 hypothetical protein; Provisional
Probab=90.36 E-value=1.7 Score=35.29 Aligned_cols=98 Identities=13% Similarity=0.050 Sum_probs=62.7
Q ss_pred EEEeehHHHHHHHHcCCChHHhHHHhhcccceeeecHHHHHHHHHhchhhHHHHHhccC-CCceeeecCC----------
Q 029889 66 RVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEKLGQKYRVALRIAKD-PRFERLPCTH---------- 134 (186)
Q Consensus 66 ~VLvDtNFl~~~~~~kldl~~~l~~~L~~k~~~~iT~CVi~ELekLg~k~r~Al~lak~-~~~e~~kC~H---------- 134 (186)
.+++||+.++.... .+.+ .++||.-|++|+..-. .+..+..+.. ..++...=+.
T Consensus 3 ~~VlDtS~~I~~~~-----------~~~~--~i~tp~~V~~Ev~d~~--~~~~~~~l~~~~~i~v~~p~~~~i~~v~~~a 67 (164)
T PRK12496 3 IKVLDASAFIHGYN-----------PEDG--EHYTTPSVVEEVKDKE--SRLILESAISAGKLKILEPSPESIEKVEEAA 67 (164)
T ss_pred EEEEEChHHHccch-----------hhCC--CEEecHHHHHHHhCHH--HHHHHHHhcccCCeEEECCCHHHHHHHHHHH
Confidence 58999999986522 1233 4799999999998732 2222222221 0122211110
Q ss_pred --CC-----CChHHHHHHHhhcCceEEEEecCHHHHHHHhhcCCccEEEEeec
Q 029889 135 --KG-----TYADDCLVERVTQHKCFIVATCDRDLKRRIRKVRSTDLYLGTAF 180 (186)
Q Consensus 135 --~g-----~~addCI~~~v~~~~~yiVATnD~~LrrrlRkipGVPiiyi~~~ 180 (186)
.| ..+|.-++.++...+ ..+.|.|..+++-++.. |++++-+.++
T Consensus 68 ~~tgd~~~Ls~~D~~~iaLA~el~-~~lvtDD~~~~~vA~~l-gi~v~~~~~~ 118 (164)
T PRK12496 68 IKTGDLMRLSNTDIEVLALALELN-GTLYTDDYGIQNVAKKL-NIKFENIKTK 118 (164)
T ss_pred HhcCCccccchhhHHHHHHHHHhC-CcEECcHHHHHHHHHHc-CCeEeccccc
Confidence 01 146667777777766 48999999999999999 9999988744
No 18
>PF05991 NYN_YacP: YacP-like NYN domain; InterPro: IPR010298 This family consists of several hypothetical bacterial proteins as well as some uncharacterised sequences from Arabidopsis thaliana. The function of this family is unknown.
Probab=89.88 E-value=0.86 Score=36.89 Aligned_cols=41 Identities=27% Similarity=0.357 Sum_probs=33.8
Q ss_pred CCCChHHHHHHHhhc----CceEEEEecCHHHHHHHhhcCCccEEE
Q 029889 135 KGTYADDCLVERVTQ----HKCFIVATCDRDLKRRIRKVRSTDLYL 176 (186)
Q Consensus 135 ~g~~addCI~~~v~~----~~~yiVATnD~~LrrrlRkipGVPiiy 176 (186)
.|.+||+.|.+++.. +...+|+|.|..+++.++.. |.-.|.
T Consensus 75 ~~~tAD~~Ie~~v~~~~~~~~~v~VVTSD~~iq~~~~~~-GA~~is 119 (166)
T PF05991_consen 75 EGETADDYIERLVRELKNRPRQVTVVTSDREIQRAARGR-GAKRIS 119 (166)
T ss_pred CCCCHHHHHHHHHHHhccCCCeEEEEeCCHHHHHHHhhC-CCEEEc
Confidence 356999999999965 24589999999999999988 776654
No 19
>PF02639 DUF188: Uncharacterized BCR, YaiI/YqxD family COG1671; InterPro: IPR003791 This entry describes proteins of unknown function.
Probab=89.07 E-value=0.97 Score=35.58 Aligned_cols=52 Identities=19% Similarity=0.089 Sum_probs=42.3
Q ss_pred CCceeeecCCCCCChHHHHHHHhhcCceEEEEecCHHHHHHHhhcCCccEEEEee
Q 029889 125 PRFERLPCTHKGTYADDCLVERVTQHKCFIVATCDRDLKRRIRKVRSTDLYLGTA 179 (186)
Q Consensus 125 ~~~e~~kC~H~g~~addCI~~~v~~~~~yiVATnD~~LrrrlRkipGVPiiyi~~ 179 (186)
+..+..-|+.....||+-|++.+.+.. +|.|||-.|-.++-.. |+.+|.-++
T Consensus 27 ~~~~~i~Vd~g~DaaD~~I~~~~~~gD--iVITqDigLA~~~l~K-ga~vl~~rG 78 (130)
T PF02639_consen 27 PYVEMIVVDSGFDAADFYIVNHAKPGD--IVITQDIGLASLLLAK-GAYVLNPRG 78 (130)
T ss_pred CCeEEEEECCCCChHHHHHHHcCCCCC--EEEECCHHHHHHHHHC-CCEEECCCC
Confidence 345666676644479999999998887 8999999999999998 999886443
No 20
>COG1487 VapC Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]
Probab=85.97 E-value=4.7 Score=30.66 Aligned_cols=43 Identities=19% Similarity=0.060 Sum_probs=28.9
Q ss_pred eEEEeehHHHHHHHHcCCChHHhHHHhhcccceeeecHHHHHHHHH
Q 029889 65 YRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEK 110 (186)
Q Consensus 65 Y~VLvDtNFl~~~~~~kldl~~~l~~~L~~k~~~~iT~CVi~ELek 110 (186)
...++|||.+.......-.- .+...+.. ...+++.-++.||..
T Consensus 2 ~~~llDTnv~i~l~~~~~~~--~~~~~~~~-~~~~~s~it~~El~~ 44 (133)
T COG1487 2 MMYLLDTSVIIALLRGEPKE--LLELRLAE-FEIYLSSITVAELLL 44 (133)
T ss_pred CceeeeHHHHHHHHhcCChH--HHHHHHhc-CCeeecHHHHHHHHH
Confidence 35799999999987765542 22222222 567888888888854
No 21
>COG4956 Integral membrane protein (PIN domain superfamily) [General function prediction only]
Probab=84.57 E-value=3.4 Score=37.53 Aligned_cols=80 Identities=19% Similarity=0.115 Sum_probs=54.9
Q ss_pred eeeecHHHHHHHHHhchh--------hHHHHHhcc------CCCceeeecCCCC-CChHHHHHHHhhcCceEEEEecCHH
Q 029889 97 TPCITDCVMAELEKLGQK--------YRVALRIAK------DPRFERLPCTHKG-TYADDCLVERVTQHKCFIVATCDRD 161 (186)
Q Consensus 97 ~~~iT~CVi~ELekLg~k--------~r~Al~lak------~~~~e~~kC~H~g-~~addCI~~~v~~~~~yiVATnD~~ 161 (186)
.++||+-|++||..++.. =|..|++.- .++.+.+.-+-.+ ...|.-++.+++..+ -.|.|||-.
T Consensus 187 ~iiiP~FVL~ELQ~iADssD~lKR~RGRRGLdILn~iqk~~~~~v~I~~~Df~di~eVD~KLvklAk~~~-g~lvTND~N 265 (356)
T COG4956 187 TIIIPQFVLLELQHIADSSDDLKRNRGRRGLDILNEIQKEDPIQVEIYEGDFEDIPEVDSKLVKLAKVTG-GKLVTNDFN 265 (356)
T ss_pred eEeeeHHHHHHHHHHhhccchhhhhcccchhHHHHHHHhhCCCcEEEccCCccchhhHHHHHHHHHHHhC-CEEEeccCc
Confidence 589999999999998531 133444332 1134443333222 267899999998876 599999999
Q ss_pred HHHHHhhcCCccEEEEe
Q 029889 162 LKRRIRKVRSTDLYLGT 178 (186)
Q Consensus 162 LrrrlRkipGVPiiyi~ 178 (186)
|-+=..=. |||++.++
T Consensus 266 LnKVae~q-gV~vLNIN 281 (356)
T COG4956 266 LNKVAELQ-GVQVLNIN 281 (356)
T ss_pred HHHHHhhc-CCceecHH
Confidence 97766655 99999765
No 22
>COG2405 Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]
Probab=83.61 E-value=6.7 Score=31.91 Aligned_cols=99 Identities=17% Similarity=0.055 Sum_probs=61.3
Q ss_pred EEeehHHHHHH-HHcCCChHHhHHHhhcccceeeecHHHHHHHHHhchhhHHHHHhccCCCceeeecC-C---------C
Q 029889 67 VLVDTNFINFS-IQNKLDLEKGMMDCLYAKCTPCITDCVMAELEKLGQKYRVALRIAKDPRFERLPCT-H---------K 135 (186)
Q Consensus 67 VLvDtNFl~~~-~~~kldl~~~l~~~L~~k~~~~iT~CVi~ELekLg~k~r~Al~lak~~~~e~~kC~-H---------~ 135 (186)
|+.||+-|... .=-++++..++- . +++||.-|-.|++-....- ...+.-..++.+.-. | -
T Consensus 2 vvsdts~i~nla~ig~i~ll~~~y----e--~viip~~v~~E~~~~~~s~---~~~~~l~~iei~~~~n~~lv~~lre~L 72 (157)
T COG2405 2 VVSDTSPIINLANIGEIDLLHALY----E--KVIIPEQVAEEFEFGVNSG---VLPALLGWIEILRLKNRDLVNLLREKL 72 (157)
T ss_pred eeecchhHHHHHhcchhhHHHHHh----h--cccCCchHHHHHHHhhccc---ccccccCceEEeccCcHHHHHHHHHhc
Confidence 67888877544 333666665443 3 3689999999999886421 111110012222211 0 1
Q ss_pred CCChHHHHHHHhhcCceEEEEecCHHHHHHHhhcCCccEEE
Q 029889 136 GTYADDCLVERVTQHKCFIVATCDRDLKRRIRKVRSTDLYL 176 (186)
Q Consensus 136 g~~addCI~~~v~~~~~yiVATnD~~LrrrlRkipGVPiiy 176 (186)
+....+||. ++.+.++-.+.+.|++=|+-+.+. |+||+-
T Consensus 73 d~GEa~aIA-LA~e~~ad~Ll~Ddr~aR~~A~~l-gL~V~G 111 (157)
T COG2405 73 DKGEAEAIA-LALELKADLLLMDDRDARNVAKSL-GLKVTG 111 (157)
T ss_pred ccchHHHHH-HHHHcCCCeeeeccHHHHHHHHHc-CCeeee
Confidence 223456665 555666669999999999999998 999984
No 23
>COG1656 Uncharacterized conserved protein [Function unknown]
Probab=81.65 E-value=2.8 Score=34.57 Aligned_cols=43 Identities=23% Similarity=0.200 Sum_probs=36.7
Q ss_pred CChHHHHHHHhhcCceEEEEecCHHHHHHHhhcCCccEEEEeeccc
Q 029889 137 TYADDCLVERVTQHKCFIVATCDRDLKRRIRKVRSTDLYLGTAFHD 182 (186)
Q Consensus 137 ~~addCI~~~v~~~~~yiVATnD~~LrrrlRkipGVPiiyi~~~~~ 182 (186)
...|+-|+.++.++++ |+-|-|++|-+|. +. |++.||+...+.
T Consensus 34 ~~~d~~i~~i~~~e~r-IllTRDr~L~~r~-k~-g~~~i~i~~~s~ 76 (165)
T COG1656 34 NESDDEIILIAKKEGR-ILLTRDRELYKRA-KL-GIKAILIRSDSI 76 (165)
T ss_pred cCCcHHHHHHHhcCCe-EEEeccHHHHHHh-hc-cCceEEEeCCCH
Confidence 4678889989888875 9999999999999 77 999999987653
No 24
>smart00500 SFM Splicing Factor Motif, present in Prp18 and Pr04.
Probab=75.33 E-value=2.2 Score=27.78 Aligned_cols=23 Identities=22% Similarity=0.235 Sum_probs=20.1
Q ss_pred ecCHHHHHHHhhcCCccEEEEeec
Q 029889 157 TCDRDLKRRIRKVRSTDLYLGTAF 180 (186)
Q Consensus 157 TnD~~LrrrlRkipGVPiiyi~~~ 180 (186)
|.|.+++++||.. |=||.++...
T Consensus 1 ~~d~eV~~~LR~l-gePi~lFGE~ 23 (44)
T smart00500 1 LPDSEVIRRLREL-GEPITLFGED 23 (44)
T ss_pred CCHHHHHHHHHHc-CCCeeecCCC
Confidence 6899999999999 9999987543
No 25
>PF14367 DUF4411: Domain of unknown function (DUF4411)
Probab=73.98 E-value=4.2 Score=32.63 Aligned_cols=45 Identities=27% Similarity=0.222 Sum_probs=34.2
Q ss_pred EeehHHHHHHHHc--CCChHHhHHHhhcc---cceeeecHHHHHHHHHhc
Q 029889 68 LVDTNFINFSIQN--KLDLEKGMMDCLYA---KCTPCITDCVMAELEKLG 112 (186)
Q Consensus 68 LvDtNFl~~~~~~--kldl~~~l~~~L~~---k~~~~iT~CVi~ELekLg 112 (186)
|+|||.++.+... ..|+..++=+.|.. .-.+++++.|.+||+.=+
T Consensus 2 llDtN~~I~a~~~yY~~d~~p~fW~~L~~~~~~g~i~~~~~V~~El~~~~ 51 (162)
T PF14367_consen 2 LLDTNVFIQAWNRYYPFDIFPSFWDWLEQLIESGRIISPDEVYDELERGD 51 (162)
T ss_pred ccchHHHHHHHHhcCCchHHHHHHHHHHHHHhCCeEeehHHHHHHHhhCC
Confidence 6999999877553 67777766555543 457899999999999654
No 26
>PF01927 Mut7-C: Mut7-C RNAse domain; InterPro: IPR002782 This prokaryotic family of proteins have no known function. The proteins contain four conserved cysteines that may be involved in metal binding or disulphide bridges.
Probab=70.78 E-value=8.8 Score=30.27 Aligned_cols=37 Identities=32% Similarity=0.344 Sum_probs=31.3
Q ss_pred ChHHHHHHHhhcCceEEEEecCHHHHHHHhhcCCccEEEE
Q 029889 138 YADDCLVERVTQHKCFIVATCDRDLKRRIRKVRSTDLYLG 177 (186)
Q Consensus 138 ~addCI~~~v~~~~~yiVATnD~~LrrrlRkipGVPiiyi 177 (186)
..|+-|++++...++ ||-|.|++|.++....++ ++++
T Consensus 29 ~~D~~il~~A~~e~R-illTrd~~l~~~~~~~~~--~~li 65 (147)
T PF01927_consen 29 IDDDEILELAREEGR-ILLTRDRDLLKRRRVSGG--VILI 65 (147)
T ss_pred CChHHHHHHhhhCCe-EEEECCHHHHHHhhccCC--EEEE
Confidence 579999999988775 888999999999998855 6666
No 27
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=67.24 E-value=6.1 Score=36.91 Aligned_cols=98 Identities=16% Similarity=0.278 Sum_probs=61.8
Q ss_pred EEEeehHHHHHHHHcCCChHHhHHHhhcccceeeecHHHHHHHHHhc-------hhhHHHHHhccCCC---------c--
Q 029889 66 RVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEKLG-------QKYRVALRIAKDPR---------F-- 127 (186)
Q Consensus 66 ~VLvDtNFl~~~~~~kldl~~~l~~~L~~k~~~~iT~CVi~ELekLg-------~k~r~Al~lak~~~---------~-- 127 (186)
.-++|||.|++= ..++-+ .....++||--|++||++++ +..|.|+++...-+ +
T Consensus 4 tyVLDTnVLi~D-------P~Alf~--F~eh~VvIP~~VlEELd~~Kr~~~evgrnAR~a~r~ld~L~~~~~~l~~giPl 74 (436)
T COG1875 4 TYVLDTNVLIHD-------PTALFR--FEEHDVVIPMVVIEELDATKRGHSEIGRNARQASRLLDELRNEHGRLKAGIPL 74 (436)
T ss_pred EEEEecceeeeC-------cHHHhc--ccccceEeeehHHHHHHhhcccchhhHHHHHHHHHHHHHHHhhcCCccCCccc
Confidence 347899988652 233332 24567899999999999973 45676665543211 0
Q ss_pred ------eeeecCCC----------CCChHHHHHHHhh----cC--ceEEEEecCHHHHHHHhhcCCcc
Q 029889 128 ------ERLPCTHK----------GTYADDCLVERVT----QH--KCFIVATCDRDLKRRIRKVRSTD 173 (186)
Q Consensus 128 ------e~~kC~H~----------g~~addCI~~~v~----~~--~~yiVATnD~~LrrrlRkipGVP 173 (186)
-++.-.|. ....|.-|++.+. ++ .+.++.|-|-.+|=+++.. |++
T Consensus 75 ~~~G~~l~iel~~~~~~~~~~~~~~~~~DnrIL~~~~~L~~~~~~~~VvLVSKDi~~RvkA~a~-Gl~ 141 (436)
T COG1875 75 GNKGGTLHVELNHQNSTKLPNGFREGVNDNRILAVVLNLQEEEPGRRVVLVSKDINLRVKASAL-GLA 141 (436)
T ss_pred CCCCCeEEEEEeccCccccccccccccchHHHHHHHHHHHhcCCCCcEEEEECCccceeehhhc-Ccc
Confidence 01112232 1256777777763 22 3689999999988888887 776
No 28
>PRK04358 hypothetical protein; Provisional
Probab=66.92 E-value=17 Score=31.28 Aligned_cols=55 Identities=20% Similarity=0.217 Sum_probs=43.1
Q ss_pred HHhchhhHHHHHhccCCCceeeecCCCCCChHHHHHHHhhcCceEEEEecCHHHHHHHhhcCCccEEE
Q 029889 109 EKLGQKYRVALRIAKDPRFERLPCTHKGTYADDCLVERVTQHKCFIVATCDRDLKRRIRKVRSTDLYL 176 (186)
Q Consensus 109 ekLg~k~r~Al~lak~~~~e~~kC~H~g~~addCI~~~v~~~~~yiVATnD~~LrrrlRkipGVPiiy 176 (186)
.+|-.+||.|++- ++.+..+|--++.++.+-+ .+|.|.|..+++.+.+. ||.++-
T Consensus 144 ~~lRekYReAlr~-----------G~ldS~~DidvlaLA~ELd-a~lvTdD~giqn~A~~L-GI~~~~ 198 (217)
T PRK04358 144 SKLREKYREALRK-----------GILDSAEDLDVLLLAKELD-AAVVSADEGIRKWAERL-GLRFVD 198 (217)
T ss_pred HHHHHHHHHHHHc-----------CcccchhhHHHHHHHHHhC-CEEEeCCHHHHHHHHHc-CCeeec
Confidence 4455679999853 2334467888888888876 69999999999999999 998764
No 29
>cd06167 LabA_like LabA_like proteins. A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression.
Probab=66.54 E-value=54 Score=24.81 Aligned_cols=107 Identities=18% Similarity=0.178 Sum_probs=56.9
Q ss_pred EEEeehHHHHHHHHc----CCChHHhHHHhhcc----cceeeecHHHHHHHHHhchhhHHHHHhccCCCceeeecCCC--
Q 029889 66 RVLVDTNFINFSIQN----KLDLEKGMMDCLYA----KCTPCITDCVMAELEKLGQKYRVALRIAKDPRFERLPCTHK-- 135 (186)
Q Consensus 66 ~VLvDtNFl~~~~~~----kldl~~~l~~~L~~----k~~~~iT~CVi~ELekLg~k~r~Al~lak~~~~e~~kC~H~-- 135 (186)
-|++|++-+..+... .+|+...+..+... ..+.|.....- +. -..+..+|+-. .++.......
T Consensus 4 ~ifiD~~Nl~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~r~y~~~~~~---~~-~~~~~~~L~~~---g~~~~~~~~~~~ 76 (149)
T cd06167 4 AVFIDGENLYYSLRDLGGKRFDYRKLLEFLRDGGEIVLARAYGNWTSP---ER-QRGFLDALRRL---GFEPIQKPLRTR 76 (149)
T ss_pred EEEEeHHHHHHHHHHhcCCCcCHHHHHHHHHhCCeEEEEEEEEecCCc---hh-HHHHHHHHHHC---CcEEEEEcceec
Confidence 589999998887666 47876555544421 22333322211 00 01123333222 2443333321
Q ss_pred ---CCChHHHHH----HHhhc--CceEEEEecCHH---HHHHHhhcCCccEEEEeec
Q 029889 136 ---GTYADDCLV----ERVTQ--HKCFIVATCDRD---LKRRIRKVRSTDLYLGTAF 180 (186)
Q Consensus 136 ---g~~addCI~----~~v~~--~~~yiVATnD~~---LrrrlRkipGVPiiyi~~~ 180 (186)
...+|-.|. +.+.. -.+++++|.|.+ +-++||+. |..|+-+.-.
T Consensus 77 ~~~~~~~D~~l~~d~~~~~~~~~~d~ivLvSgD~Df~~~i~~lr~~-G~~V~v~~~~ 132 (149)
T cd06167 77 GSGKKGVDVALAIDALELAYKRRIDTIVLVSGDSDFVPLVERLREL-GKRVIVVGFE 132 (149)
T ss_pred CCcccCccHHHHHHHHHHhhhcCCCEEEEEECCccHHHHHHHHHHc-CCEEEEEccC
Confidence 113333332 22222 367999999988 45788888 9998877654
No 30
>COG1671 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=64.80 E-value=11 Score=30.57 Aligned_cols=36 Identities=22% Similarity=0.234 Sum_probs=32.9
Q ss_pred ChHHHHHHHhhcCceEEEEecCHHHHHHHhhcCCccEEE
Q 029889 138 YADDCLVERVTQHKCFIVATCDRDLKRRIRKVRSTDLYL 176 (186)
Q Consensus 138 ~addCI~~~v~~~~~yiVATnD~~LrrrlRkipGVPiiy 176 (186)
-||+-|++++.+.. +|.|+|-.|-.++-.. |+-+|.
T Consensus 55 aaD~~Iv~~a~~gD--lVVT~Di~LA~~ll~k-g~~v~~ 90 (150)
T COG1671 55 AADDWIVNLAEKGD--LVVTADIPLASLLLDK-GAAVLN 90 (150)
T ss_pred hHHHHHHHhCCCCC--EEEECchHHHHHHHhc-CCEEEC
Confidence 68999999998887 9999999999999998 988884
No 31
>PF01936 NYN: NYN domain; InterPro: IPR021139 This highly conserved domain has no known function. However it contains many conserved aspartates, suggesting an enzymatic function such as an endonuclease or glycosyl hydrolase.; PDB: 2QIP_A.
Probab=60.35 E-value=66 Score=23.86 Aligned_cols=104 Identities=15% Similarity=0.173 Sum_probs=44.6
Q ss_pred EEEeehHHHHHHHH-cCCChHHhHHHhhcc-c---ceeeecHHHHHHHHHhchhhHHHHHhccCCCceeeecCCC-----
Q 029889 66 RVLVDTNFINFSIQ-NKLDLEKGMMDCLYA-K---CTPCITDCVMAELEKLGQKYRVALRIAKDPRFERLPCTHK----- 135 (186)
Q Consensus 66 ~VLvDtNFl~~~~~-~kldl~~~l~~~L~~-k---~~~~iT~CVi~ELekLg~k~r~Al~lak~~~~e~~kC~H~----- 135 (186)
-|++|.+-+..+.. ..+|+...+..+... . ...|.. .-..-.+.+..+|+... ++...+...
T Consensus 3 avfvD~eN~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~y~~-----~~~~~~~~~~~~L~~~g---~~v~~~~~~~~~~~ 74 (146)
T PF01936_consen 3 AVFVDGENLYIPLKRWDIDFERLLEEIRKYGPLVRIRAYGN-----WDDPNQKSFQEALQRAG---IKVRHFPLRKRGGG 74 (146)
T ss_dssp EEEEEHHHHHHHHHSS-B-HHHHHHHHTTTEEEEEEEEEE---------HHHHHHHHHHHHHT----EEEE------S--
T ss_pred EEEEEhHhCchhhCCCCCCHHHHHHHHHhcCCeEEEEEEee-----ccccchhhHHHHHHhCe---eeEEeeeccccccc
Confidence 48899999998876 236665544443332 1 222323 11111122333343222 333333221
Q ss_pred C-CChHHHHH-HH---h--hcCceEEEEecCHH---HHHHHhhcCCccEEEEe
Q 029889 136 G-TYADDCLV-ER---V--TQHKCFIVATCDRD---LKRRIRKVRSTDLYLGT 178 (186)
Q Consensus 136 g-~~addCI~-~~---v--~~~~~yiVATnD~~---LrrrlRkipGVPiiyi~ 178 (186)
+ ..+|--|. ++ + .....++++|.|.+ +-++||+. |..|+.+.
T Consensus 75 ~k~~~D~~l~~d~~~~~~~~~~d~ivLvSgD~Df~~~v~~l~~~-g~~V~v~~ 126 (146)
T PF01936_consen 75 GKKGVDVALAVDILELAYENPPDTIVLVSGDSDFAPLVRKLRER-GKRVIVVG 126 (146)
T ss_dssp -S---HHHHHHHHHHHG--GG-SEEEEE---GGGHHHHHHHHHH---EEEEEE
T ss_pred ccCCcHHHHHHHHHHHhhccCCCEEEEEECcHHHHHHHHHHHHc-CCEEEEEE
Confidence 1 13444442 22 2 22467999999987 55677776 99888776
No 32
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=60.27 E-value=22 Score=26.12 Aligned_cols=36 Identities=14% Similarity=0.189 Sum_probs=29.2
Q ss_pred ChHHHHHHHhhcCceEEEEecC-----HHHHHHHhhcCCccE
Q 029889 138 YADDCLVERVTQHKCFIVATCD-----RDLKRRIRKVRSTDL 174 (186)
Q Consensus 138 ~addCI~~~v~~~~~yiVATnD-----~~LrrrlRkipGVPi 174 (186)
.|.++|-.+-..+..+++.||. .++.++|++. |+++
T Consensus 18 ga~e~l~~L~~~g~~~~~lTNns~~s~~~~~~~L~~~-Gi~~ 58 (101)
T PF13344_consen 18 GAVEALDALRERGKPVVFLTNNSSRSREEYAKKLKKL-GIPV 58 (101)
T ss_dssp THHHHHHHHHHTTSEEEEEES-SSS-HHHHHHHHHHT-TTT-
T ss_pred CHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHHhc-CcCC
Confidence 6888888888777779999998 5899999888 9884
No 33
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=48.60 E-value=25 Score=24.80 Aligned_cols=33 Identities=15% Similarity=0.066 Sum_probs=25.1
Q ss_pred eEEEEecCH--HHHHHHhhc---CCccEEEEeeccccC
Q 029889 152 CFIVATCDR--DLKRRIRKV---RSTDLYLGTAFHDIG 184 (186)
Q Consensus 152 ~yiVATnD~--~LrrrlRki---pGVPiiyi~~~~~~~ 184 (186)
.++..+.+. +.+..+++. -.||+|++...|-+|
T Consensus 29 ~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i~~~~igg 66 (80)
T COG0695 29 EEIDVDDDEPEEAREMVKRGKGQRTVPQIFIGGKHVGG 66 (80)
T ss_pred EEEEecCCcHHHHHHHHHHhCCCCCcCEEEECCEEEeC
Confidence 366777777 777777765 579999999987664
No 34
>PF11977 RNase_Zc3h12a: Zc3h12a-like Ribonuclease NYN domain; InterPro: IPR021869 This domain is found in the Zc3h12a protein which has shown to be a ribonuclease that controls the stability of a set of inflammatory genes []. It has been suggested that this domain belongs to the PIN domain superfamily []. ; PDB: 3V33_A 3V34_B 3V32_B.
Probab=47.68 E-value=16 Score=28.95 Aligned_cols=23 Identities=17% Similarity=0.446 Sum_probs=15.0
Q ss_pred CChHHHHHHHhhcCceEEEEecCH
Q 029889 137 TYADDCLVERVTQHKCFIVATCDR 160 (186)
Q Consensus 137 ~~addCI~~~v~~~~~yiVATnD~ 160 (186)
.|+|-.|+++|.+++. +|.|||+
T Consensus 88 ~ydD~~il~~A~~~~a-~IVSND~ 110 (155)
T PF11977_consen 88 NYDDRYILYYAEEKDA-VIVSNDR 110 (155)
T ss_dssp B-HHHHHHHHHHHTT--EEE-S--
T ss_pred ccchHHHHHHHHHcCC-EEEeCch
Confidence 3799999999999886 5559994
No 35
>COG4113 Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]
Probab=47.47 E-value=1.4e+02 Score=23.55 Aligned_cols=103 Identities=15% Similarity=0.078 Sum_probs=55.7
Q ss_pred CeEEEeehHHHHHHHHcCCC--hHHhHHHhhcccceeeecHHHHHHHHHhchh-------hHHHHHhccCCCceeeecCC
Q 029889 64 PYRVLVDTNFINFSIQNKLD--LEKGMMDCLYAKCTPCITDCVMAELEKLGQK-------YRVALRIAKDPRFERLPCTH 134 (186)
Q Consensus 64 PY~VLvDtNFl~~~~~~kld--l~~~l~~~L~~k~~~~iT~CVi~ELekLg~k-------~r~Al~lak~~~~e~~kC~H 134 (186)
|..+++|++++...+-.--+ .............-.+.-.+|..-+.++... ...++...+ ++....-++
T Consensus 1 ~~~~vvDaSa~i~~~v~e~~~~~~~~~~~~~~~~~~~l~~~Ev~~~~~k~~~~~~l~~~~~~~~~~~l~--~l~v~~~~~ 78 (134)
T COG4113 1 MEMIVVDASALVKLLVREENSDAVALRLKAEELHAPDLAIGEVANALWKLVVRVELSVEEALAALKLLR--RLAVTRVPL 78 (134)
T ss_pred CcEEEeeHHHHHHHHhccccchHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH--hCCceecCC
Confidence 35789999999766533333 2233333323332233344555555555432 233444444 233322222
Q ss_pred C--------------CCC-hHHHHHHHhhcCceEEEEecCHHHHHHHhhc
Q 029889 135 K--------------GTY-ADDCLVERVTQHKCFIVATCDRDLKRRIRKV 169 (186)
Q Consensus 135 ~--------------g~~-addCI~~~v~~~~~yiVATnD~~LrrrlRki 169 (186)
. +.+ .|---+..+...++ .+-|+|+.|-+..++.
T Consensus 79 ~~~ll~~A~~i~~~~~lt~YDA~yialAe~~g~-~l~T~D~rL~~~~~~~ 127 (134)
T COG4113 79 SEELLERAWEIALKYSLTVYDALYIALAERLGL-ELVTADKRLARKAKKA 127 (134)
T ss_pred cHHHHHHHHHHHHhcCccHHHHHHHHHHHHcCC-eEEeCCHHHHHHhhhc
Confidence 1 123 34445567777775 8889999999998875
No 36
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=47.27 E-value=1.4e+02 Score=29.11 Aligned_cols=82 Identities=18% Similarity=0.151 Sum_probs=54.1
Q ss_pred ceeeecHHHHHHHHHhchh-----------hHHHHHhccCCCceeeecCC----------CCCChHHHHHHHhhcCceEE
Q 029889 96 CTPCITDCVMAELEKLGQK-----------YRVALRIAKDPRFERLPCTH----------KGTYADDCLVERVTQHKCFI 154 (186)
Q Consensus 96 ~~~~iT~CVi~ELekLg~k-----------~r~Al~lak~~~~e~~kC~H----------~g~~addCI~~~v~~~~~yi 154 (186)
...+|+..|++|||..... .+.-.+++.+-.+++.-.+. ++.-.|.-|-+.+.+++ ++
T Consensus 31 ~~viipeAvvsele~qAn~Gr~~G~~gLeEL~kL~~l~~~g~i~~~~~gerp~~~~Ik~ak~GEid~miR~vA~e~~-a~ 109 (604)
T COG1855 31 ATVIIPEAVVSELEAQANRGREIGFAGLEELKKLRDLADEGKIELEFVGERPTLEEIKRAKSGEIDAMIREVALEYG-AT 109 (604)
T ss_pred cEEEeeHHHHHHHHHHhccchhhhhhHHHHHHHHHHHHhcCcEEEEEEeccCchhhhcccccccHHHHHHHHHHHhC-cE
Confidence 4789999999999988421 23333444331132222221 12356777888888888 59
Q ss_pred EEecCHHHHHHHhhcCCccEEEEee
Q 029889 155 VATCDRDLKRRIRKVRSTDLYLGTA 179 (186)
Q Consensus 155 VATnD~~LrrrlRkipGVPiiyi~~ 179 (186)
+.|.|+-=+.-.+.. |+-+.|+..
T Consensus 110 lVTsD~vQ~~va~a~-Giev~yl~p 133 (604)
T COG1855 110 LVTSDRVQRDVARAK-GIEVEYLEP 133 (604)
T ss_pred EEechHHHHHHHHhc-CceEEEeCC
Confidence 999998666666655 999999876
No 37
>PF02739 5_3_exonuc_N: 5'-3' exonuclease, N-terminal resolvase-like domain; InterPro: IPR020046 The N-terminal and internal 5'3'-exonuclease domains are commonly found together, and are most often associated with 5' to 3' nuclease activities. The XPG protein signatures (PDOC00658 from PROSITEDOC) are never found outside the '53EXO' domains. The latter are found in more diverse proteins [, , ]. The number of amino acids that separate the two 53EXO domains, and the presence of accompanying motifs allow the diagnosis of several protein families. In the eubacterial type A DNA-polymerases, the N-terminal and internal domains are separated by a few amino acids, usually four. The pattern DNA_POLYMERASE_A (IPR001098 from INTERPRO) is always present towards the C terminus. Several eukaryotic structure-dependent endonucleases and exonucleases have the 53EXO domains separated by 24 to 27 amino acids, and the XPG protein signatures are always present. In several proteins from herpesviridae, the two 53EXO domains are separated by 50 to 120 amino acids. These proteins are implicated in the inhibition of the expression of the host genes. Eukaryotic DNA repair proteins with 600 to 700 amino acids between the 53_EXO domains all carry the XPG protein signatures. This entry represents the N-terminal resolvase-like domain, which has a 3-layer alpha/beta/alpha core structure and contains an alpha-helical arch [, ].; GO: 0003677 DNA binding, 0008409 5'-3' exonuclease activity; PDB: 1TAQ_A 1BGX_T 1TAU_A 1XO1_B 1EXN_A 1UT8_A 1UT5_B 3H7I_A 3H8J_A 3H8S_A ....
Probab=47.03 E-value=20 Score=29.06 Aligned_cols=34 Identities=24% Similarity=0.332 Sum_probs=26.1
Q ss_pred CCCChHHHHHHHhhc---C-ceEEEEecCHHHHHHHhh
Q 029889 135 KGTYADDCLVERVTQ---H-KCFIVATCDRDLKRRIRK 168 (186)
Q Consensus 135 ~g~~addCI~~~v~~---~-~~yiVATnD~~LrrrlRk 168 (186)
.|--|||+|-.++.. + ...+|.|.|+||.+-+..
T Consensus 106 ~g~EADDvIatla~~~~~~~~~v~IvS~DkD~~QLv~~ 143 (169)
T PF02739_consen 106 PGYEADDVIATLAKKASEEGFEVIIVSGDKDLLQLVDE 143 (169)
T ss_dssp TTB-HHHHHHHHHHHHHHTTCEEEEE-SSGGGGGGTCS
T ss_pred CCCcHHHHHHHHHhhhccCCCEEEEEcCCCCHHHhcCC
Confidence 455799999999865 2 358999999999998886
No 38
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=46.98 E-value=18 Score=23.33 Aligned_cols=28 Identities=7% Similarity=0.115 Sum_probs=20.6
Q ss_pred EEEEecCHHHHHHHhhc---CCccEEEEeec
Q 029889 153 FIVATCDRDLKRRIRKV---RSTDLYLGTAF 180 (186)
Q Consensus 153 yiVATnD~~LrrrlRki---pGVPiiyi~~~ 180 (186)
++=.+.|.++++.+++. .++|.+++.+.
T Consensus 28 ~~dv~~~~~~~~~l~~~~g~~~~P~v~i~g~ 58 (60)
T PF00462_consen 28 EVDVDEDEEAREELKELSGVRTVPQVFIDGK 58 (60)
T ss_dssp EEEGGGSHHHHHHHHHHHSSSSSSEEEETTE
T ss_pred EcccccchhHHHHHHHHcCCCccCEEEECCE
Confidence 44556666778877665 79999999765
No 39
>COG2082 CobH Precorrin isomerase [Coenzyme metabolism]
Probab=46.17 E-value=72 Score=27.26 Aligned_cols=115 Identities=21% Similarity=0.165 Sum_probs=73.5
Q ss_pred CCCCCeEEEeehHHHHHHHHcCCChHHhHHHhhcccceeeecHHHHHHHHHhchhhHHHH--HhccCCCceeeecCCCC-
Q 029889 60 ALGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEKLGQKYRVAL--RIAKDPRFERLPCTHKG- 136 (186)
Q Consensus 60 gf~~PY~VLvDtNFl~~~~~~kldl~~~l~~~L~~k~~~~iT~CVi~ELekLg~k~r~Al--~lak~~~~e~~kC~H~g- 136 (186)
+|+..=.|++|+|++..-+.... ...++ ++.++|-+--..|+-+--...|.+. +++.. +++.-.+---|
T Consensus 65 AL~~g~~Iv~Dv~MV~aGI~~~~------l~~~~-~v~c~i~d~~~~e~a~~~g~Trsaa~~~~~~~-~~~~~~ivvIGN 136 (210)
T COG2082 65 ALKAGCPIVVDVNMVAAGITRRR------LPALN-PVICYVDDPRVAELAKEEGITRSAAGMRLAAE-RGEGGAIVVIGN 136 (210)
T ss_pred HHHcCCcEEEccHHHHHhccccc------ccccC-cEEEEecCcchHHHHHhhCchHHHHHHHHHHH-hcCCceEEEEeC
Confidence 56777899999999988755443 23455 8888888888888865422333332 22221 22110111112
Q ss_pred -CChHHHHHHHhhcC---ceEEEEe-----cCHHHHHHHhhcCCccEEEEeecccc
Q 029889 137 -TYADDCLVERVTQH---KCFIVAT-----CDRDLKRRIRKVRSTDLYLGTAFHDI 183 (186)
Q Consensus 137 -~~addCI~~~v~~~---~~yiVAT-----nD~~LrrrlRkipGVPiiyi~~~~~~ 183 (186)
.+|-.-+++++.+. -.++|++ +-.+-|+.|++. +||-|.+++..-+
T Consensus 137 APTAL~~l~elie~~~~~palvIg~PVGFv~AaesKe~L~~~-~iP~itv~G~rGG 191 (210)
T COG2082 137 APTALFELLELIEEGGIKPALVIGVPVGFVGAAESKEALRES-PIPYITVRGRRGG 191 (210)
T ss_pred CHHHHHHHHHHHHccCCCCcEEEEcCCcccchHHHHHHHHhC-CCCeEEEecCCCC
Confidence 35677777777652 3478875 678999999999 5999999887654
No 40
>COG0117 RibD Pyrimidine deaminase [Coenzyme metabolism]
Probab=44.84 E-value=24 Score=28.58 Aligned_cols=46 Identities=22% Similarity=0.364 Sum_probs=30.8
Q ss_pred eeeecCCCCCChHHHHHHHhhc-CceEEEEecCHHH------HHHHhhcCCccEE
Q 029889 128 ERLPCTHKGTYADDCLVERVTQ-HKCFIVATCDRDL------KRRIRKVRSTDLY 175 (186)
Q Consensus 128 e~~kC~H~g~~addCI~~~v~~-~~~yiVATnD~~L------rrrlRkipGVPii 175 (186)
..-+|+|.|. +--|--.++.. -...+||+.|++- -.+||+. |+.|-
T Consensus 74 TLEPCsH~Gr-TPPC~~ali~agi~rVvva~~DPnp~Vag~G~~~L~~a-Gi~V~ 126 (146)
T COG0117 74 TLEPCSHYGR-TPPCADALIKAGVARVVVAMLDPNPLVAGGGLARLRAA-GIEVE 126 (146)
T ss_pred EecCcccCCC-CcchHHHHHHhCCCEEEEEecCCCccccCchHHHHHHc-CCeEE
Confidence 3446999985 22355555543 2558999999994 3678887 86654
No 41
>PF09713 A_thal_3526: Plant protein 1589 of unknown function (A_thal_3526); InterPro: IPR006476 This plant-specific family of proteins are defined by an uncharacterised region 57 residues in length. It is found toward the N terminus of most proteins that contain it. Examples include at least several proteins from Arabidopsis thaliana (Mouse-ear cress) and Oryza sativa (Rice). The function of the proteins are unknown.
Probab=43.31 E-value=52 Score=22.30 Aligned_cols=46 Identities=28% Similarity=0.333 Sum_probs=34.6
Q ss_pred HHHHHHHHcCCChHHhHHHhh--cccceeeecHHHHHHHHHhchhhHHH
Q 029889 72 NFINFSIQNKLDLEKGMMDCL--YAKCTPCITDCVMAELEKLGQKYRVA 118 (186)
Q Consensus 72 NFl~~~~~~kldl~~~l~~~L--~~k~~~~iT~CVi~ELekLg~k~r~A 118 (186)
|-|=.|++..++-.+ +.+.| .+++.|.+|.-|..+|++=.+.+=.|
T Consensus 3 ~lIErCl~~yMsk~E-~v~~L~~~a~I~P~~T~~VW~~Le~eN~eFF~a 50 (54)
T PF09713_consen 3 NLIERCLQLYMSKEE-CVRALQKQANIEPVFTSTVWQKLEKENPEFFKA 50 (54)
T ss_pred hHHHHHHHHcCCHHH-HHHHHHHHcCCChHHHHHHHHHHHHHCHHHHHH
Confidence 345667888888644 44456 46899999999999999988875444
No 42
>COG4634 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=41.63 E-value=52 Score=25.57 Aligned_cols=38 Identities=13% Similarity=0.079 Sum_probs=30.8
Q ss_pred hHHHHHHHhhcCceEEEEecCHHHHHHHhhcCCcc--EEEEe
Q 029889 139 ADDCLVERVTQHKCFIVATCDRDLKRRIRKVRSTD--LYLGT 178 (186)
Q Consensus 139 addCI~~~v~~~~~yiVATnD~~LrrrlRkipGVP--iiyi~ 178 (186)
.|.-|.+.+..++ +++.|.|.|.-....-. |-| |+.++
T Consensus 36 ~D~EI~a~A~~~~-~iivTkDsDF~~la~~~-G~Ppki~wLr 75 (113)
T COG4634 36 TDIEIWAYARRNN-RIIVTKDSDFADLALTL-GSPPKIVWLR 75 (113)
T ss_pred ccHHHHHHHHhcC-cEEEEcCccHHHHHHHc-CCCCeEEEEE
Confidence 4888889998887 79999999998888877 877 44443
No 43
>TIGR03875 RNA_lig_partner RNA ligase partner, MJ_0950 family. This uncharacterized protein family is found almost perfectly in the same set of genomes as the Pab1020 family described by model TIGR01209. These pairs are found mostly in Archaea, but also in a few bacteria (e.g. Alkalilimnicola ehrlichei MLHE-1, Aquifex aeolicus). While the partner protein has been described as homodimeric ligase that has RNA circularization activity, the function of this protein (also called UPF0278) is unknown.
Probab=41.44 E-value=86 Score=26.82 Aligned_cols=55 Identities=22% Similarity=0.265 Sum_probs=42.0
Q ss_pred HHhchhhHHHHHhccCCCceeeecCCCCCChHHHHHHHhhcCceEEEEecCHHHHHHHhhcCCccEEE
Q 029889 109 EKLGQKYRVALRIAKDPRFERLPCTHKGTYADDCLVERVTQHKCFIVATCDRDLKRRIRKVRSTDLYL 176 (186)
Q Consensus 109 ekLg~k~r~Al~lak~~~~e~~kC~H~g~~addCI~~~v~~~~~yiVATnD~~LrrrlRkipGVPiiy 176 (186)
.+|-.+||.|++--- + +..+|--++.++.+-+ ..|.|.|..+++-+.+. |+.++-
T Consensus 140 ~~lRekYReAlR~Gi------L-----dS~~DidvlaLA~ELd-a~lvTdD~giqn~A~~L-gi~~~~ 194 (206)
T TIGR03875 140 RKLREKYREALRKGI------L-----DSAEDLDVLLLAKELD-AAVVSADEGIRKWAERL-GLRFVD 194 (206)
T ss_pred HHHHHHHHHHHHccc------c-----CchhhHHHHHHHHHcC-cEEEeCcHHHHHHHHHc-CCeeec
Confidence 444567999985311 1 2357888888888876 69999999999999999 998764
No 44
>cd00008 53EXOc 5'-3' exonuclease; T5 type 5'-3' exonuclease domains may co-occur with DNA polymerase I (Pol I) domains, or be part of Pol I containing complexes. They digest dsDNA and ssDNA, releasing mono-,di- and tri-nucleotides, as well as oligonucleotides, and have also been reported to possess RNase H activity. Also called 5' nuclease family, involved in structure-specific cleavage of flaps formed by Pol I activity (similar to mammalian flap endonuclease I, FEN-1). A single nucleic acid strand may be threaded through the 5' nuclease enzyme before cleavage occurs. The domain binds two divalent metal ions which are necessary for activity.
Probab=41.27 E-value=74 Score=27.03 Aligned_cols=31 Identities=23% Similarity=0.310 Sum_probs=24.3
Q ss_pred CCChHHHHHHHhhc----CceEEEEecCHHHHHHH
Q 029889 136 GTYADDCLVERVTQ----HKCFIVATCDRDLKRRI 166 (186)
Q Consensus 136 g~~addCI~~~v~~----~~~yiVATnD~~Lrrrl 166 (186)
|.-|||.|-.++.. ...++|+|.|+||..-+
T Consensus 106 ~~EADD~ia~la~~~~~~g~~~~I~S~DkD~~ql~ 140 (240)
T cd00008 106 GYEADDVIGTLAKKAEAEGYKVVIVSGDKDLLQLV 140 (240)
T ss_pred CcCHHHHHHHHHHHHHHcCCeEEEEeCCCChhhhC
Confidence 44799999988853 34589999999998665
No 45
>COG1439 Predicted nucleic acid-binding protein, consists of a PIN domain and a Zn-ribbon module [General function prediction only]
Probab=39.79 E-value=1.5e+02 Score=24.70 Aligned_cols=100 Identities=15% Similarity=0.090 Sum_probs=64.8
Q ss_pred EEEeehHHHHHHHHcCCChHHhHHHhhcccceeeecHHHHHHHHHhchhh--HHHHHhccCCCceeeecCCC--------
Q 029889 66 RVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEKLGQKY--RVALRIAKDPRFERLPCTHK-------- 135 (186)
Q Consensus 66 ~VLvDtNFl~~~~~~kldl~~~l~~~L~~k~~~~iT~CVi~ELekLg~k~--r~Al~lak~~~~e~~kC~H~-------- 135 (186)
..++||..++.. ++++ .+.|. .++|.-|++|++.-..++ ..++...+ +....+++.
T Consensus 8 ~~vlDtsa~I~g---~~~~------~~~g~--~yttp~Vv~Eikd~~s~~~~e~~~~~~~---~kv~~P~~e~vk~V~e~ 73 (177)
T COG1439 8 LYVLDTSAFING---KIPL------LLDGR--LYTTPSVVEEIKDRESRSLLELLLESGK---VKVAEPSTEYVKEVREA 73 (177)
T ss_pred eEEecchhhccC---CCCc------ccCCc--ccccHHHHHHHhchhhhHHHHHHhhhcC---eeEecCCHHHHHHHHHH
Confidence 467888877654 3332 22333 688889999998776543 23333233 555556541
Q ss_pred ----C-----CChHHHHHHHhhcCc---eEEEEecCHHHHHHHhhcCCccEEEEeec
Q 029889 136 ----G-----TYADDCLVERVTQHK---CFIVATCDRDLKRRIRKVRSTDLYLGTAF 180 (186)
Q Consensus 136 ----g-----~~addCI~~~v~~~~---~yiVATnD~~LrrrlRkipGVPiiyi~~~ 180 (186)
| +.+|--++.++-+.+ +.+++|-|-.+++=+.++ |+-++++.-.
T Consensus 74 a~~tgd~~~LS~tDi~VlalAlel~~~~~v~l~TdDysvQNVa~~L-gi~~~~~~~~ 129 (177)
T COG1439 74 AKKTGDLGNLSPTDIEVLALALELGEEVQVALATDDYSVQNVALQL-GLNVRSISYK 129 (177)
T ss_pred HHhhCcccccChhhHHHHHHHHhhccccceeEEecchHHHHHHHHh-CceEEeeecc
Confidence 1 146666666665533 379999999999999999 9999875443
No 46
>cd08568 GDPD_TmGDE_like Glycerophosphodiester phosphodiesterase domain of Thermotoga maritime and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Thermotoga maritime glycerophosphodiester phosphodiesterase (TmGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. TmGDE exists as a monomer that might be the biologically relevant form.
Probab=38.87 E-value=1.6e+02 Score=24.16 Aligned_cols=79 Identities=19% Similarity=0.183 Sum_probs=54.2
Q ss_pred eecHHHHHHHHHhc------hhhHHHHHhccCCCceeeecCCCCCChHHHHHHHhhcC---ceEEEEecCHHHHHHHhh-
Q 029889 99 CITDCVMAELEKLG------QKYRVALRIAKDPRFERLPCTHKGTYADDCLVERVTQH---KCFIVATCDRDLKRRIRK- 168 (186)
Q Consensus 99 ~iT~CVi~ELekLg------~k~r~Al~lak~~~~e~~kC~H~g~~addCI~~~v~~~---~~yiVATnD~~LrrrlRk- 168 (186)
.|.+..++||.+|. +.+...+..+.+ .. .+..+-+.....+-+++++.++ ...+|.+-|.+.-+++|+
T Consensus 60 ~v~~~t~~eL~~l~~~g~~iPtL~evl~~~~~-~~-~l~iEiK~~~~~~~~~~~l~~~~~~~~v~i~SF~~~~l~~~~~~ 137 (226)
T cd08568 60 KVKELTYKELKKLHPGGELIPTLEEVFRALPN-DA-IINVEIKDIDAVEPVLEIVEKFNALDRVIFSSFNHDALRELRKL 137 (226)
T ss_pred eeecCCHHHHhhCCCCCCcCCCHHHHHHhcCC-Cc-EEEEEECCccHHHHHHHHHHHcCCCCcEEEEECCHHHHHHHHHh
Confidence 46677788888872 235666666653 11 2445555444456677777653 457999999999999997
Q ss_pred cCCccEEEEee
Q 029889 169 VRSTDLYLGTA 179 (186)
Q Consensus 169 ipGVPiiyi~~ 179 (186)
.|.+|+.++..
T Consensus 138 ~p~~~~~~l~~ 148 (226)
T cd08568 138 DPDAKVGLLIG 148 (226)
T ss_pred CCCCcEEEEee
Confidence 49999998864
No 47
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=37.25 E-value=53 Score=22.17 Aligned_cols=32 Identities=19% Similarity=0.121 Sum_probs=23.6
Q ss_pred EEEEecCHHHHHHHhhc---CCccEEEEeeccccC
Q 029889 153 FIVATCDRDLKRRIRKV---RSTDLYLGTAFHDIG 184 (186)
Q Consensus 153 yiVATnD~~LrrrlRki---pGVPiiyi~~~~~~~ 184 (186)
++-.+.|.+.+..+.+. ++||+|++.+..=+|
T Consensus 28 ~~di~~~~~~~~~~~~~~g~~~vP~i~i~g~~igg 62 (79)
T TIGR02181 28 EIRVDGDPALRDEMMQRSGRRTVPQIFIGDVHVGG 62 (79)
T ss_pred EEEecCCHHHHHHHHHHhCCCCcCEEEECCEEEcC
Confidence 45567788887777653 679999998876554
No 48
>PF10130 PIN_2: PIN domain; InterPro: IPR019298 This entry represents a set of bacterial and archaeal proteins that are predicted to be RNases (from similarities to 5'-exonucleases).
Probab=36.23 E-value=29 Score=27.25 Aligned_cols=43 Identities=16% Similarity=0.146 Sum_probs=29.7
Q ss_pred EeehHHHHHHHHc-CCChHHhHHHhhcccceeeecHHHHHHHHHhch
Q 029889 68 LVDTNFINFSIQN-KLDLEKGMMDCLYAKCTPCITDCVMAELEKLGQ 113 (186)
Q Consensus 68 LvDtNFl~~~~~~-kldl~~~l~~~L~~k~~~~iT~CVi~ELekLg~ 113 (186)
+||||.++.++-. +.-. +.-.......+++++-++.|+++-.+
T Consensus 1 VvDaNIl~Sall~~~~~~---~~~~~~~~~~f~~p~~~~~Ei~kh~~ 44 (133)
T PF10130_consen 1 VVDANILFSALLGKRSRT---RILLVEPRIEFFAPDYALEEIEKHLP 44 (133)
T ss_pred CccHHHHHHHHHccCcce---eeeecccchheeccHHHHHHHHHHHH
Confidence 5899999998543 2211 11123456789999999999988754
No 49
>PF02570 CbiC: Precorrin-8X methylmutase; InterPro: IPR003722 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CbiC and CobH precorrin-8X methylmutase (also known as precorrin isomerase, 5.4.1.2 from EC), both as stand-alone enzymes and when CobJ forms part of a bifunctional enzyme. CobH and CbiC from the aerobic and anaerobic pathways, respectively, catalyse a methyl rearrangement in precorrin-8 that moves the methyl group from C-11 to C-12 to produce hydrogenobyrinic acid []. Hydrogenobyrinic acid now contains all the major framework alterations associated with corrin synthesis []. CobH and CbiC can sometimes be fused to other enzymes in the cobalamin pathway to make bifunctional enzymes: e.g., with CobJ/CibH (precorrin-3B C17-methylase/precorrin isomerase, IPR014422 from INTERPRO) and with CbiX (precorrin isomerase, IPR012067 from INTERPRO).; GO: 0016993 precorrin-8X methylmutase activity, 0009236 cobalamin biosynthetic process; PDB: 1V9C_B 1I1H_A 1F2V_A 1OU0_B 2AFV_A 2AFR_A 3E7D_D.
Probab=34.21 E-value=2.2e+02 Score=24.06 Aligned_cols=116 Identities=17% Similarity=0.105 Sum_probs=66.5
Q ss_pred CCCCCeEEEeehHHHHHHHHcCCChHHhHHHhhcccceeeecHHHHHHHHHh-ch-hhHHHHHhccCC-CceeeecCCCC
Q 029889 60 ALGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEKL-GQ-KYRVALRIAKDP-RFERLPCTHKG 136 (186)
Q Consensus 60 gf~~PY~VLvDtNFl~~~~~~kldl~~~l~~~L~~k~~~~iT~CVi~ELekL-g~-k~r~Al~lak~~-~~e~~kC~H~g 136 (186)
.|+.--.|++|++++..- |......-|++++.+++-+--..|+-+- |. +.-.+++.+.+. .-...-.+- .
T Consensus 56 AL~~g~~IvtDv~Mv~aG------I~~~~l~~~g~~v~c~i~d~~v~~~A~~~g~TRs~aa~~~a~~~~~~~I~vIGN-A 128 (198)
T PF02570_consen 56 ALRAGAPIVTDVNMVAAG------INKRRLAKLGNEVYCYIDDPEVAELAKEEGITRSAAAMRKAAKELPGAIVVIGN-A 128 (198)
T ss_dssp HHHTT-EEEESSHHHHHH------S-HHHHHTCT-EEEECTTSHHHHHHHHHHTS-HHHHHHHHHHCTTTTCEEEESS--
T ss_pred HHHCCCeEEEchHHHHHH------hCHhhHHHcCCcEEEECCCCchHHHHhhcCCcHHHHHHHHHHHHcCCcEEEEeC-c
Confidence 456667899999999887 4445555678899999977665555444 32 223334444320 000000000 0
Q ss_pred CChHHHHHHHhhcC---ceEEEE-----ecCHHHHHHHhhcCCccEEEEeecccc
Q 029889 137 TYADDCLVERVTQH---KCFIVA-----TCDRDLKRRIRKVRSTDLYLGTAFHDI 183 (186)
Q Consensus 137 ~~addCI~~~v~~~---~~yiVA-----TnD~~LrrrlRkipGVPiiyi~~~~~~ 183 (186)
.+|---+++++.+. -.+||+ +|=.+-++.|.+. |||-|.+.+.+-+
T Consensus 129 PTAL~~ll~li~~~~~~PalVIg~PVGFV~A~ESKe~L~~~-~vP~I~~~G~kGG 182 (198)
T PF02570_consen 129 PTALFELLELIEEGGVRPALVIGVPVGFVGAAESKEALMQS-GVPYITVRGRKGG 182 (198)
T ss_dssp HHHHHHHHHHHHTTT-TTSEEEE---SSSSHHHHHHHHHHS-TS-EEEESSS---
T ss_pred HHHHHHHHHHHHhcCCCCcEEEECCCcccCcHHHHHHHHhC-CCCEEEEecCCCC
Confidence 14555566666552 236777 4778999999999 9999998876543
No 50
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=34.16 E-value=45 Score=22.02 Aligned_cols=32 Identities=19% Similarity=0.095 Sum_probs=22.7
Q ss_pred EEEEecCHHHHHHHhhc---C-CccEEEEeeccccC
Q 029889 153 FIVATCDRDLKRRIRKV---R-STDLYLGTAFHDIG 184 (186)
Q Consensus 153 yiVATnD~~LrrrlRki---p-GVPiiyi~~~~~~~ 184 (186)
++-.+.|.+++..+++. . +||+|++.+..-+|
T Consensus 29 ~i~i~~~~~~~~~~~~~~~~~~~vP~v~i~g~~igg 64 (75)
T cd03418 29 EIDVDGDPALREEMINRSGGRRTVPQIFIGDVHIGG 64 (75)
T ss_pred EEECCCCHHHHHHHHHHhCCCCccCEEEECCEEEeC
Confidence 45556777777777543 2 79999999876655
No 51
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=32.75 E-value=47 Score=24.35 Aligned_cols=31 Identities=3% Similarity=-0.078 Sum_probs=23.2
Q ss_pred EEEecCHHHHHHHhhc-------CCccEEEEeeccccC
Q 029889 154 IVATCDRDLKRRIRKV-------RSTDLYLGTAFHDIG 184 (186)
Q Consensus 154 iVATnD~~LrrrlRki-------pGVPiiyi~~~~~~~ 184 (186)
+=.+.|.+.+..+++. +-||-||+...|-+|
T Consensus 36 iDI~~d~~~r~em~~~~~~~~g~~tvPQIFi~~~~iGg 73 (92)
T cd03030 36 VDISMNEENRQWMRENVPNENGKPLPPQIFNGDEYCGD 73 (92)
T ss_pred EecCCCHHHHHHHHHhcCCCCCCCCCCEEEECCEEeeC
Confidence 4455688888887755 468999999888765
No 52
>COG0069 GltB Glutamate synthase domain 2 [Amino acid transport and metabolism]
Probab=31.90 E-value=24 Score=33.69 Aligned_cols=14 Identities=36% Similarity=0.586 Sum_probs=12.6
Q ss_pred EEEEecCHHHHHHH
Q 029889 153 FIVATCDRDLKRRI 166 (186)
Q Consensus 153 yiVATnD~~Lrrrl 166 (186)
.=|||||++||+|+
T Consensus 425 ~GIaTqdp~Lrkrl 438 (485)
T COG0069 425 VGIATQDPELRKRL 438 (485)
T ss_pred ceeeecCHHHHhhc
Confidence 56999999999996
No 53
>cd08556 GDPD Glycerophosphodiester phosphodiesterase domain as found in prokaryota and eukaryota, and similar proteins. The typical glycerophosphodiester phosphodiesterase domain (GDPD) consists of a TIM barrel and a small insertion domain named the GDPD-insertion (GDPD-I) domain, which is specific for GDPD proteins. This family corresponds to both typical GDPD domain and GDPD-like domain which lacks the GDPD-I region. Members in this family mainly consist of a large family of prokaryotic and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), and a number of uncharacterized homologs. Sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria are also included in this family. GDPD plays an essential role in glycerol metabolism and catalyzes the hydrolysis of glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcoho
Probab=31.13 E-value=1.5e+02 Score=22.85 Aligned_cols=43 Identities=12% Similarity=0.124 Sum_probs=34.4
Q ss_pred hHHHHHHHhhcC---ceEEEEecCHHHHHHHhhc-CCccEEEEeecc
Q 029889 139 ADDCLVERVTQH---KCFIVATCDRDLKRRIRKV-RSTDLYLGTAFH 181 (186)
Q Consensus 139 addCI~~~v~~~---~~yiVATnD~~LrrrlRki-pGVPiiyi~~~~ 181 (186)
..+.+++++.++ ++.++.+-|.+..+++++. |++|+.++....
T Consensus 77 ~~~~l~~~i~~~~~~~~v~i~s~~~~~l~~~~~~~p~~~~~~~~~~~ 123 (189)
T cd08556 77 LEAKVAELLREYGLEERVVVSSFDHEALRALKELDPEVPTGLLVDKP 123 (189)
T ss_pred HHHHHHHHHHHcCCcCCEEEEeCCHHHHHHHHHhCCCCcEEEEeecC
Confidence 456677777663 5689999999999999986 999999887644
No 54
>PRK09482 flap endonuclease-like protein; Provisional
Probab=30.97 E-value=67 Score=28.05 Aligned_cols=41 Identities=12% Similarity=0.188 Sum_probs=28.5
Q ss_pred CCCCCChHHHHHHHhhc----CceEEEEecCHHHHHHHhhcCCccEE
Q 029889 133 THKGTYADDCLVERVTQ----HKCFIVATCDRDLKRRIRKVRSTDLY 175 (186)
Q Consensus 133 ~H~g~~addCI~~~v~~----~~~yiVATnD~~LrrrlRkipGVPii 175 (186)
.+.|.-|||.|-.++.+ +...+++|.|+||.+-+. ++|-+.
T Consensus 102 ~~~g~EADDvIatla~~~~~~~~~v~I~S~DKDl~Qlv~--~~v~~~ 146 (256)
T PRK09482 102 HADGNEADDLIATLAVKVAQAGHQATIVSTDKGYCQLLS--PTIQIR 146 (256)
T ss_pred ccCCcCHHHHHHHHHHHHHHCCCeEEEEECCCCccccCC--CCeEEE
Confidence 34455799998888754 335789999999977654 345443
No 55
>COG0337 AroB 3-dehydroquinate synthetase [Amino acid transport and metabolism]
Probab=30.82 E-value=30 Score=31.83 Aligned_cols=16 Identities=44% Similarity=0.742 Sum_probs=14.5
Q ss_pred CCCCCeEEEeehHHHH
Q 029889 60 ALGPPYRVLVDTNFIN 75 (186)
Q Consensus 60 gf~~PY~VLvDtNFl~ 75 (186)
.|.+|+-||+|+.||.
T Consensus 155 aF~qP~aVi~D~~~L~ 170 (360)
T COG0337 155 AFYQPKAVLIDTDFLK 170 (360)
T ss_pred cccCCcEEEEchHHhc
Confidence 5889999999999984
No 56
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=29.93 E-value=1.4e+02 Score=21.28 Aligned_cols=37 Identities=14% Similarity=0.247 Sum_probs=27.6
Q ss_pred HHHHHHhhcCc-eEEEEecCHHHHHHHhhcCCccEEEEe
Q 029889 141 DCLVERVTQHK-CFIVATCDRDLKRRIRKVRSTDLYLGT 178 (186)
Q Consensus 141 dCI~~~v~~~~-~yiVATnD~~LrrrlRkipGVPiiyi~ 178 (186)
..|++...+.+ .++|.+.|++..+.++.. |+++++-.
T Consensus 11 ~~i~~~L~~~~~~vvvid~d~~~~~~~~~~-~~~~i~gd 48 (116)
T PF02254_consen 11 REIAEQLKEGGIDVVVIDRDPERVEELREE-GVEVIYGD 48 (116)
T ss_dssp HHHHHHHHHTTSEEEEEESSHHHHHHHHHT-TSEEEES-
T ss_pred HHHHHHHHhCCCEEEEEECCcHHHHHHHhc-cccccccc
Confidence 34444444443 699999999999999998 89988743
No 57
>COG5573 Predicted nucleic-acid-binding protein, contains PIN domain [General function prediction only]
Probab=28.99 E-value=59 Score=26.15 Aligned_cols=42 Identities=17% Similarity=0.235 Sum_probs=30.5
Q ss_pred EEEeehHHHHHHHHcCCC-----hHHhHHHhhcccceeeecHHHHHHHH
Q 029889 66 RVLVDTNFINFSIQNKLD-----LEKGMMDCLYAKCTPCITDCVMAELE 109 (186)
Q Consensus 66 ~VLvDtNFl~~~~~~kld-----l~~~l~~~L~~k~~~~iT~CVi~ELe 109 (186)
..-+|||.+++++.++-+ +.+.|.+.+.- ..+|+.-|++|+-
T Consensus 5 ~~flDsNI~iYa~~~~~~~~kr~~a~~L~~a~~~--~~VVs~QVl~Et~ 51 (142)
T COG5573 5 PAFLDSNILIYALDNNAGEKKRDAAEVLEQALGH--TYVVSVQVLNETC 51 (142)
T ss_pred hhhhccchhhhhhcccchhhHHHHHHHHHHhcCc--eEEEehHHHHHHH
Confidence 356899999998766654 44556655543 3789999999983
No 58
>PRK10824 glutaredoxin-4; Provisional
Probab=28.88 E-value=1.1e+02 Score=23.42 Aligned_cols=32 Identities=9% Similarity=0.024 Sum_probs=26.1
Q ss_pred EEEEecCHHHHHHHhhc---CCccEEEEeeccccC
Q 029889 153 FIVATCDRDLKRRIRKV---RSTDLYLGTAFHDIG 184 (186)
Q Consensus 153 yiVATnD~~LrrrlRki---pGVPiiyi~~~~~~~ 184 (186)
++--..|.+++..|.+. |=||-|||++.+=||
T Consensus 49 ~idi~~d~~~~~~l~~~sg~~TVPQIFI~G~~IGG 83 (115)
T PRK10824 49 YVDILQNPDIRAELPKYANWPTFPQLWVDGELVGG 83 (115)
T ss_pred EEEecCCHHHHHHHHHHhCCCCCCeEEECCEEEcC
Confidence 55666788888888875 779999999998776
No 59
>PF02348 CTP_transf_3: Cytidylyltransferase; InterPro: IPR003329 Synonym(s): CMP-N-acetylneuraminic acid synthetase Acylneuraminate cytidylyltransferase (2.7.7.43 from EC) (CMP-NeuAc synthetase) catalyzes the reaction of CTP and NeuAc to form CMP-NeuAc, which is the nucleotide sugar donor used by sialyltransferases []. The outer membrane lipooligosaccharides of some microorganisms contain terminal sialic acid attached to N-acetyllactosamine and so this modification may be important in pathogenesis.; GO: 0009103 lipopolysaccharide biosynthetic process; PDB: 3K8D_C 1VH1_B 3K8E_C 1QWJ_A 3EWI_A 1VIC_B 3DUV_A 1VH3_C 3TQD_A 2Y6P_C ....
Probab=27.99 E-value=84 Score=25.13 Aligned_cols=44 Identities=16% Similarity=0.166 Sum_probs=29.9
Q ss_pred ChHHHHHHHhhc---CceEEEEecCHHHHHHHhhcCCccEEEEeeccc
Q 029889 138 YADDCLVERVTQ---HKCFIVATCDRDLKRRIRKVRSTDLYLGTAFHD 182 (186)
Q Consensus 138 ~addCI~~~v~~---~~~yiVATnD~~LrrrlRkipGVPiiyi~~~~~ 182 (186)
+--...++.+.+ -...+|||.|.+...-+.+. |+.++..+....
T Consensus 25 pLi~~~i~~a~~s~~~d~IvVaTd~~~i~~~~~~~-g~~v~~~~~~~~ 71 (217)
T PF02348_consen 25 PLIEYVIERAKQSKLIDEIVVATDDEEIDDIAEEY-GAKVIFRRGSLA 71 (217)
T ss_dssp EHHHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHT-TSEEEE--TTSS
T ss_pred cHHHHHHHHHHhCCCCCeEEEeCCCHHHHHHHHHc-CCeeEEcChhhc
Confidence 334444555544 13489999999999999998 888877665543
No 60
>TIGR01589 A_thal_3526 uncharacterized plant-specific domain TIGR01589. This model represents an uncharacterized plant-specific domain 57 residues in length. It is found toward the N-terminus of most proteins that contain it. Examples include at least 10 proteins from Arabidopsis thaliana and at least one from Oryza sativa.
Probab=27.93 E-value=1.4e+02 Score=20.48 Aligned_cols=47 Identities=26% Similarity=0.159 Sum_probs=33.8
Q ss_pred HHHHHHHHcCCChHHhHHHhhc-ccceeeecHHHHHHHHHhchhhHHH
Q 029889 72 NFINFSIQNKLDLEKGMMDCLY-AKCTPCITDCVMAELEKLGQKYRVA 118 (186)
Q Consensus 72 NFl~~~~~~kldl~~~l~~~L~-~k~~~~iT~CVi~ELekLg~k~r~A 118 (186)
|.|=.|++.-++..+-+.-+.. ++..|.+|.-|..+|++=.+++=.|
T Consensus 6 ~lIE~Cl~~yMsk~E~v~~L~~~a~I~P~~T~~VW~~LekeN~eFF~a 53 (57)
T TIGR01589 6 NRIETCIQGYMSKEETVSFLFENAGISPKFTRFVWYLLEKENADFFRC 53 (57)
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHH
Confidence 4455677777776554443333 6789999999999999988875444
No 61
>COG1212 KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=27.73 E-value=82 Score=27.63 Aligned_cols=33 Identities=18% Similarity=0.280 Sum_probs=28.6
Q ss_pred ceEEEEecCHHHHHHHhhcCCccEEEEeeccccC
Q 029889 151 KCFIVATCDRDLKRRIRKVRSTDLYLGTAFHDIG 184 (186)
Q Consensus 151 ~~yiVATnD~~LrrrlRkipGVPiiyi~~~~~~~ 184 (186)
.+.+|||.|.+...-..+. |.-++.-+..|.+|
T Consensus 44 ~rvvVATDde~I~~av~~~-G~~avmT~~~h~SG 76 (247)
T COG1212 44 DRVVVATDDERIAEAVQAF-GGEAVMTSKDHQSG 76 (247)
T ss_pred CeEEEEcCCHHHHHHHHHh-CCEEEecCCCCCCc
Confidence 5689999999999999999 88888777777766
No 62
>PTZ00062 glutaredoxin; Provisional
Probab=27.18 E-value=59 Score=27.32 Aligned_cols=32 Identities=13% Similarity=-0.058 Sum_probs=24.8
Q ss_pred EEEecCHHHHHHHhhc---CCccEEEEeeccccCC
Q 029889 154 IVATCDRDLKRRIRKV---RSTDLYLGTAFHDIGI 185 (186)
Q Consensus 154 iVATnD~~LrrrlRki---pGVPiiyi~~~~~~~~ 185 (186)
+=-..|.+.+..+.+. |.||.+||++.+-+|.
T Consensus 148 ~DI~~d~~~~~~l~~~sg~~TvPqVfI~G~~IGG~ 182 (204)
T PTZ00062 148 YNIFEDPDLREELKVYSNWPTYPQLYVNGELIGGH 182 (204)
T ss_pred EEcCCCHHHHHHHHHHhCCCCCCeEEECCEEEcCh
Confidence 3345788888888765 7899999999887763
No 63
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=25.86 E-value=72 Score=21.27 Aligned_cols=25 Identities=8% Similarity=0.028 Sum_probs=17.5
Q ss_pred HHHHHHHhh---cCCccEEEEeeccccC
Q 029889 160 RDLKRRIRK---VRSTDLYLGTAFHDIG 184 (186)
Q Consensus 160 ~~LrrrlRk---ipGVPiiyi~~~~~~~ 184 (186)
.+++..+.+ .+++|.+|+.+..-+|
T Consensus 39 ~~~~~~~~~~~g~~~~P~v~~~g~~igg 66 (82)
T cd03419 39 SEIQDYLQELTGQRTVPNVFIGGKFIGG 66 (82)
T ss_pred HHHHHHHHHHhCCCCCCeEEECCEEEcC
Confidence 455555554 4789999998876554
No 64
>smart00475 53EXOc 5'-3' exonuclease.
Probab=25.68 E-value=1e+02 Score=26.62 Aligned_cols=32 Identities=22% Similarity=0.275 Sum_probs=24.9
Q ss_pred CCChHHHHHHHhhc----CceEEEEecCHHHHHHHh
Q 029889 136 GTYADDCLVERVTQ----HKCFIVATCDRDLKRRIR 167 (186)
Q Consensus 136 g~~addCI~~~v~~----~~~yiVATnD~~LrrrlR 167 (186)
|.-|||.|-.++.. ....+|+|.|+||..-+.
T Consensus 105 g~EADD~iatla~~~~~~g~~~~IvS~DkDl~ql~~ 140 (259)
T smart00475 105 GYEADDVIATLAKKAEAEGYEVRIVSGDKDLLQLVS 140 (259)
T ss_pred CcCHHHHHHHHHHHHHhCCCeEEEEeCCCcHhhcCC
Confidence 44699999888864 235899999999987664
No 65
>COG5611 Predicted nucleic-acid-binding protein, contains PIN domain [General function prediction only]
Probab=25.03 E-value=3.5e+02 Score=21.42 Aligned_cols=99 Identities=23% Similarity=0.229 Sum_probs=62.4
Q ss_pred EEeehHHHHHHH--HcCCC-hHHhHHHhhcccceeeecHHHHHHHHHh---chh-----hHHHHH-hccCCCceeeecCC
Q 029889 67 VLVDTNFINFSI--QNKLD-LEKGMMDCLYAKCTPCITDCVMAELEKL---GQK-----YRVALR-IAKDPRFERLPCTH 134 (186)
Q Consensus 67 VLvDtNFl~~~~--~~kld-l~~~l~~~L~~k~~~~iT~CVi~ELekL---g~k-----~r~Al~-lak~~~~e~~kC~H 134 (186)
+.+|||.|...+ ..++. ..+++-+-+.-+.+.+|++-|+-|+--. |.+ +...++ +..+..| .-+|
T Consensus 2 ig~DTnvL~r~l~eddkvq~ka~Q~f~~~s~~~k~fI~~~vliE~V~vL~~~y~~~rE~i~~VIetll~~~~f---~V~~ 78 (130)
T COG5611 2 IGLDTNVLLRFLSEDDKVQTKAEQFFEELSQKGKLFIPEEVLIELVYVLEHGYKWEREDIYEVIETLLNDELF---NVEL 78 (130)
T ss_pred ccchhHHHHHHHhhhhhHHHHHHHHHHhcCcCCCccchHHHHHHHHHHHHhcchhhHHHHHHHHHHHhccccc---eecc
Confidence 579999996554 33443 3456666667778999999999998543 221 222233 4444233 3455
Q ss_pred CC-------------CChHHHHHHHhhc-CceEEEEecCHHHHHHHhh
Q 029889 135 KG-------------TYADDCLVERVTQ-HKCFIVATCDRDLKRRIRK 168 (186)
Q Consensus 135 ~g-------------~~addCI~~~v~~-~~~yiVATnD~~LrrrlRk 168 (186)
++ .+-.|||...=++ .+|-=+.|-|+.+.+-.-+
T Consensus 79 ~d~i~~A~~~Y~k~kadF~D~li~~~g~~~g~~e~vTFdk~~~~~~~~ 126 (130)
T COG5611 79 KDFIREAIKLYSKRKADFLDCLISVKGKKMGIKEVVTFDKRFKKLGFK 126 (130)
T ss_pred hHHHHHHHHHHHhccccHHHHHHHhhhhhcCceeeEeecHHHHHHhhh
Confidence 42 1447899877554 5677788999998875543
No 66
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=24.82 E-value=77 Score=22.43 Aligned_cols=29 Identities=7% Similarity=0.008 Sum_probs=21.7
Q ss_pred EecCHHHHHHHhhc---CCccEEEEeeccccC
Q 029889 156 ATCDRDLKRRIRKV---RSTDLYLGTAFHDIG 184 (186)
Q Consensus 156 ATnD~~LrrrlRki---pGVPiiyi~~~~~~~ 184 (186)
...|.+++..+.+. ..||.||+.+.+-+|
T Consensus 45 v~~~~~~~~~l~~~~g~~tvP~vfi~g~~iGG 76 (90)
T cd03028 45 ILEDEEVRQGLKEYSNWPTFPQLYVNGELVGG 76 (90)
T ss_pred cCCCHHHHHHHHHHhCCCCCCEEEECCEEEeC
Confidence 34677788888765 468999999887655
No 67
>KOG1475 consensus Ribosomal protein RPL1/RPL2/RL4L4 [RNA processing and modification]
Probab=24.77 E-value=55 Score=29.81 Aligned_cols=31 Identities=13% Similarity=0.214 Sum_probs=27.3
Q ss_pred ceEEEEecCHHHHHHHhhcCCccEEEEeecc
Q 029889 151 KCFIVATCDRDLKRRIRKVRSTDLYLGTAFH 181 (186)
Q Consensus 151 ~~yiVATnD~~LrrrlRkipGVPiiyi~~~~ 181 (186)
+-+||-++|.+.-.-.|.||||-+|.+.+-+
T Consensus 205 GPlVVy~Ed~~ivkAFRNIpGV~~~nV~~Ln 235 (363)
T KOG1475|consen 205 GPLVVYNEDNGIVKAFRNIPGVELMNVERLN 235 (363)
T ss_pred CCEEEEecCcchhhhhcCCCcceeechhhhh
Confidence 4589999999999999999999999876654
No 68
>cd08563 GDPD_TtGDE_like Glycerophosphodiester phosphodiesterase domain of Thermoanaerobacter tengcongensis and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Thermoanaerobacter tengcongensis glycerophosphodiester phosphodiesterase (TtGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Despite the fact that most of GDPD family members exist as the monomer, TtGDE can function as a dimeric unit. Its catalytic mechanism is based on the general base-acid catalysis, which is similar to that of phosphoinositide-specific phospholipases C (PI-PLCs, EC 3.1.4.11). A divalent metal cation is required for the enzyme activity of TtGDE.
Probab=24.44 E-value=2.8e+02 Score=22.68 Aligned_cols=80 Identities=21% Similarity=0.256 Sum_probs=50.2
Q ss_pred eecHHHHHHHHHhc--------------hhhHHHHHhccCCCceeeecCCCCCC-----hHHHHHHHhhcC---ceEEEE
Q 029889 99 CITDCVMAELEKLG--------------QKYRVALRIAKDPRFERLPCTHKGTY-----ADDCLVERVTQH---KCFIVA 156 (186)
Q Consensus 99 ~iT~CVi~ELekLg--------------~k~r~Al~lak~~~~e~~kC~H~g~~-----addCI~~~v~~~---~~yiVA 156 (186)
.|.+..++||..+. +.+...+.+++++.. .+..+.+... -.+.+++.+.+. +..++.
T Consensus 61 ~i~~~t~~el~~l~~~~~~~~~~~~~~iptL~evl~~~~~~~~-~l~leiK~~~~~~~~~~~~l~~~l~~~~~~~~v~~~ 139 (230)
T cd08563 61 YVKDLTLEELKKLDAGSWFDEKFTGEKIPTLEEVLDLLKDKDL-LLNIEIKTDVIHYPGIEKKVLELVKEYNLEDRVIFS 139 (230)
T ss_pred chhhCCHHHHHhcCCCCccCccCCCCcCCCHHHHHHHHHhcCc-EEEEEECCCCCcChhHHHHHHHHHHHcCCCCCEEEE
Confidence 36666777777662 124455555553221 2334544321 235677777653 457999
Q ss_pred ecCHHHHHHHhh-cCCccEEEEee
Q 029889 157 TCDRDLKRRIRK-VRSTDLYLGTA 179 (186)
Q Consensus 157 TnD~~LrrrlRk-ipGVPiiyi~~ 179 (186)
+-|.+..+++++ .|++|+.++..
T Consensus 140 Sf~~~~l~~~~~~~p~~~~~~l~~ 163 (230)
T cd08563 140 SFNHESLKRLKKLDPKIKLALLYE 163 (230)
T ss_pred cCCHHHHHHHHHHCCCCcEEEEec
Confidence 999998888886 68999998764
No 69
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=23.99 E-value=74 Score=25.40 Aligned_cols=28 Identities=14% Similarity=0.097 Sum_probs=19.8
Q ss_pred ecCHHHHHHHhhc-------CCccEEEEeeccccC
Q 029889 157 TCDRDLKRRIRKV-------RSTDLYLGTAFHDIG 184 (186)
Q Consensus 157 TnD~~LrrrlRki-------pGVPiiyi~~~~~~~ 184 (186)
..|.+.+..|++. +.||.|||.+.+-+|
T Consensus 39 s~~~~~~~EL~~~~g~~~~~~tvPqVFI~G~~IGG 73 (147)
T cd03031 39 SMDSGFREELRELLGAELKAVSLPRVFVDGRYLGG 73 (147)
T ss_pred CCCHHHHHHHHHHhCCCCCCCCCCEEEECCEEEec
Confidence 4566666655543 689999999887654
No 70
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=23.95 E-value=83 Score=19.72 Aligned_cols=28 Identities=11% Similarity=0.103 Sum_probs=18.5
Q ss_pred ecCHHHHHHHhhc---CCccEEEEeeccccC
Q 029889 157 TCDRDLKRRIRKV---RSTDLYLGTAFHDIG 184 (186)
Q Consensus 157 TnD~~LrrrlRki---pGVPiiyi~~~~~~~ 184 (186)
..|.+++..+.++ +.+|++++....-+|
T Consensus 33 ~~~~~~~~~l~~~~~~~~~P~~~~~~~~igg 63 (72)
T cd02066 33 LEDGELREELKELSGWPTVPQIFINGEFIGG 63 (72)
T ss_pred CCCHHHHHHHHHHhCCCCcCEEEECCEEEec
Confidence 4455566666543 579999997765444
No 71
>PF02877 PARP_reg: Poly(ADP-ribose) polymerase, regulatory domain; InterPro: IPR004102 Poly(ADP-ribose) polymerase catalyses the covalent attachment of ADP-ribose units from NAD+ to itself and to a limited number of other DNA binding proteins, which decreases their affinity for DNA. Poly(ADP-ribose) polymerase is a regulatory component induced by DNA damage. The regulatory domain of the polymerase is almost always associated with the C-terminal catalytic domain (see IPR001290 from INTERPRO). This domain consists of a duplication of two helix-loop-helix structural repeats [].; GO: 0003950 NAD+ ADP-ribosyltransferase activity, 0006471 protein ADP-ribosylation; PDB: 1GS0_B 3FHB_A 3C49_A 3CE0_A 3C4H_A 3KCZ_B 3KJD_B 3L3M_A 3GJW_A 1UK1_A ....
Probab=23.95 E-value=40 Score=26.20 Aligned_cols=36 Identities=33% Similarity=0.434 Sum_probs=22.3
Q ss_pred chhhHHH---HhhCCCCCeEEEeehHHHHHHHHcCCChHHhHHH
Q 029889 50 SSALFFT---HNTALGPPYRVLVDTNFINFSIQNKLDLEKGMMD 90 (186)
Q Consensus 50 ~~~~fy~---~n~gf~~PY~VLvDtNFl~~~~~~kldl~~~l~~ 90 (186)
-|+.||+ ++||++.|. ++|+.-.+. .++++.+.|.+
T Consensus 71 lsn~fYtlIPh~fg~~~~~--~I~~~~~l~---~k~~lle~L~d 109 (133)
T PF02877_consen 71 LSNRFYTLIPHNFGRSRPP--VIDTEEKLK---EKLELLEALLD 109 (133)
T ss_dssp HHHHHHHHSTB-STTS-S----STSHHHHH---HHHHHHHHHHH
T ss_pred HHHHHHHHCCCcccCCCCC--CcCCHHHHH---HHHHHHHHHHH
Confidence 6889998 578988887 778765543 45566666655
No 72
>KOG4127 consensus Renal dipeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=22.49 E-value=3.6e+02 Score=25.35 Aligned_cols=108 Identities=19% Similarity=0.202 Sum_probs=62.0
Q ss_pred EeehHHHHHHHHcCCChHHhHHHhhcccceeeecHHHHHHHHHhch----------hhHHHHHhccCCCceee-----ec
Q 029889 68 LVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEKLGQ----------KYRVALRIAKDPRFERL-----PC 132 (186)
Q Consensus 68 LvDtNFl~~~~~~kldl~~~l~~~L~~k~~~~iT~CVi~ELekLg~----------k~r~Al~lak~~~~e~~-----kC 132 (186)
=+||-|.-.+...-.+-.... .| .. -.-+-|+.|+.+||- -++.||+.++-|-+=-+ -|
T Consensus 207 ~C~tpwA~a~~~~~~~~~~~~----~g-Ls-~FG~~vV~EMNRLGMmVDLShvS~atm~~aL~vS~APVIFSHSsA~~vc 280 (419)
T KOG4127|consen 207 TCDTPWADAAIVDYHDGENNI----GG-LS-PFGQKVVFEMNRLGMMVDLSHVSDATMRDALEVSRAPVIFSHSSAYSVC 280 (419)
T ss_pred ccCCCchhhhhhcccCcCccc----CC-cc-HHHHHHHHHHhhhhheeehhhcCHHHHHHHHHhhcCceEeecccHHHHh
Confidence 378888877754322211100 00 01 123567899999984 37899999987754211 16
Q ss_pred CCCCCChHHHHHHHhhcCceEEEEecCH---------------HHHHHHhhcCCccEEEEeeccc
Q 029889 133 THKGTYADDCLVERVTQHKCFIVATCDR---------------DLKRRIRKVRSTDLYLGTAFHD 182 (186)
Q Consensus 133 ~H~g~~addCI~~~v~~~~~yiVATnD~---------------~LrrrlRkipGVPiiyi~~~~~ 182 (186)
+|. .+.-|-|++++.+++-.+..+-+. +-...+|++.|+--|-+....+
T Consensus 281 ns~-rNVPDdVL~llk~NgGvVMVnfy~~~isc~~~A~v~~v~~Hi~hIr~VaG~~hIGlGg~yD 344 (419)
T KOG4127|consen 281 NSS-RNVPDDVLQLLKENGGVVMVNFYPGFISCSDRATVSDVADHINHIRAVAGIDHIGLGGDYD 344 (419)
T ss_pred cCc-cCCcHHHHHHHhhcCCEEEEEeecccccCCCcccHHHHHHHHHHHHHhhccceeeccCCcC
Confidence 663 355567788887764333333222 3456778888887776655433
No 73
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=21.91 E-value=1.4e+02 Score=21.42 Aligned_cols=41 Identities=15% Similarity=0.089 Sum_probs=28.5
Q ss_pred HHHHHhhcCceEEEEecC------HHHHHHHhhcCCccEEEEeecccc
Q 029889 142 CLVERVTQHKCFIVATCD------RDLKRRIRKVRSTDLYLGTAFHDI 183 (186)
Q Consensus 142 CI~~~v~~~~~yiVATnD------~~LrrrlRkipGVPiiyi~~~~~~ 183 (186)
.|-+.+.+-...||.|+= ...++..++. |+|++|.++.+-+
T Consensus 41 ~l~~~i~~aD~VIv~t~~vsH~~~~~vk~~akk~-~ip~~~~~~~~~~ 87 (97)
T PF10087_consen 41 RLPSKIKKADLVIVFTDYVSHNAMWKVKKAAKKY-GIPIIYSRSRGVS 87 (97)
T ss_pred HHHHhcCCCCEEEEEeCCcChHHHHHHHHHHHHc-CCcEEEECCCCHH
Confidence 477778777765666543 4466666677 9999999866543
No 74
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=21.82 E-value=95 Score=22.51 Aligned_cols=28 Identities=11% Similarity=0.064 Sum_probs=20.0
Q ss_pred ecCHHHHHHHhhc---CCccEEEEeeccccC
Q 029889 157 TCDRDLKRRIRKV---RSTDLYLGTAFHDIG 184 (186)
Q Consensus 157 TnD~~LrrrlRki---pGVPiiyi~~~~~~~ 184 (186)
..|.+++..+.+. +.||.||+.+.+-+|
T Consensus 50 ~~~~~~~~~l~~~tg~~tvP~vfi~g~~iGG 80 (97)
T TIGR00365 50 LEDPEIRQGIKEYSNWPTIPQLYVKGEFVGG 80 (97)
T ss_pred CCCHHHHHHHHHHhCCCCCCEEEECCEEEeC
Confidence 3566666666543 689999999887555
No 75
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=21.75 E-value=1.3e+02 Score=25.23 Aligned_cols=36 Identities=8% Similarity=0.073 Sum_probs=26.5
Q ss_pred ChHHHHHHHhhcCceEEEEec-----CHHHHHHHhhcCCccE
Q 029889 138 YADDCLVERVTQHKCFIVATC-----DRDLKRRIRKVRSTDL 174 (186)
Q Consensus 138 ~addCI~~~v~~~~~yiVATn-----D~~LrrrlRkipGVPi 174 (186)
.+.++|-.+......++++|| -.++..++++. |+++
T Consensus 21 ~a~~~l~~l~~~g~~~~~~Tnn~~r~~~~~~~~l~~~-g~~~ 61 (249)
T TIGR01457 21 EAETFVHELQKRDIPYLFVTNNSTRTPESVAEMLASF-DIPA 61 (249)
T ss_pred CHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHc-CCCC
Confidence 467777777766667888887 46677788877 7765
No 76
>COG1911 RPL30 Ribosomal protein L30E [Translation, ribosomal structure and biogenesis]
Probab=21.43 E-value=1.1e+02 Score=23.39 Aligned_cols=40 Identities=10% Similarity=0.037 Sum_probs=26.9
Q ss_pred HHHHHHh-hcCceEEEEecCHHHHHHHhh----cCCccEEEEeec
Q 029889 141 DCLVERV-TQHKCFIVATCDRDLKRRIRK----VRSTDLYLGTAF 180 (186)
Q Consensus 141 dCI~~~v-~~~~~yiVATnD~~LrrrlRk----ipGVPiiyi~~~ 180 (186)
.-|..+. ++.++.|||.|-+..++.--+ ..|+||++....
T Consensus 26 ~tiK~lk~gkaKliiiAsN~P~~~k~~ieyYAkLs~ipV~~y~Gt 70 (100)
T COG1911 26 RTIKSLKLGKAKLIIIASNCPKELKEDIEYYAKLSDIPVYVYEGT 70 (100)
T ss_pred HHHHHHHcCCCcEEEEecCCCHHHHHHHHHHHHHcCCcEEEecCC
Confidence 3444443 345789999998877665544 459999987653
No 77
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=21.12 E-value=2.1e+02 Score=22.99 Aligned_cols=41 Identities=10% Similarity=0.098 Sum_probs=28.9
Q ss_pred hHHHHHHHhhcC-ceEEEEecCH----HHHHHHhhcCCccEEEEeec
Q 029889 139 ADDCLVERVTQH-KCFIVATCDR----DLKRRIRKVRSTDLYLGTAF 180 (186)
Q Consensus 139 addCI~~~v~~~-~~yiVATnD~----~LrrrlRkipGVPiiyi~~~ 180 (186)
..++|-+.+.++ ...||.+.|. ++-+++... ||||+.+.+.
T Consensus 44 q~~~i~~~i~~~~d~Iiv~~~~~~~~~~~l~~~~~~-gIpvv~~d~~ 89 (257)
T PF13407_consen 44 QIEQIEQAISQGVDGIIVSPVDPDSLAPFLEKAKAA-GIPVVTVDSD 89 (257)
T ss_dssp HHHHHHHHHHTTESEEEEESSSTTTTHHHHHHHHHT-TSEEEEESST
T ss_pred HHHHHHHHHHhcCCEEEecCCCHHHHHHHHHHHhhc-CceEEEEecc
Confidence 456666666554 4466676775 567778887 9999998765
No 78
>PF12813 XPG_I_2: XPG domain containing
Probab=21.12 E-value=1.1e+02 Score=26.34 Aligned_cols=25 Identities=28% Similarity=0.254 Sum_probs=21.8
Q ss_pred CChHHHHHHHhhcCceEEEEecCHHH
Q 029889 137 TYADDCLVERVTQHKCFIVATCDRDL 162 (186)
Q Consensus 137 ~~addCI~~~v~~~~~yiVATnD~~L 162 (186)
.-||.=+..+|.+++| .|.|+|-||
T Consensus 28 ~EAD~~~A~~A~~~~~-~VLt~DSDf 52 (246)
T PF12813_consen 28 GEADRECAALARKWGC-PVLTNDSDF 52 (246)
T ss_pred ccchHHHHHHHHHcCC-eEEccCCCE
Confidence 3689999999999998 888999885
No 79
>PHA00439 exonuclease
Probab=20.95 E-value=91 Score=27.81 Aligned_cols=32 Identities=25% Similarity=0.345 Sum_probs=23.7
Q ss_pred CCCCChHHHHHHHhhc---Cc--eEEEEecCHHHHHH
Q 029889 134 HKGTYADDCLVERVTQ---HK--CFIVATCDRDLKRR 165 (186)
Q Consensus 134 H~g~~addCI~~~v~~---~~--~yiVATnD~~Lrrr 165 (186)
..|--|||+|-.++.. .+ ..+|+|.|+||.+=
T Consensus 116 ~~G~EADDvIgtla~~~~~~g~~~vvIvS~DKDl~QL 152 (286)
T PHA00439 116 EPGLEGDDVMGIIGTNPSLFGFKKAVLVSCDKDFKTI 152 (286)
T ss_pred eCCccHHHHHHHHHHHHHHCCCCeEEEEeCCCCHhhc
Confidence 3455799999888753 22 46899999998774
No 80
>cd08559 GDPD_periplasmic_GlpQ_like Periplasmic glycerophosphodiester phosphodiesterase domain (GlpQ) and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in bacterial and eukaryotic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46) similar to Escherichia coli periplasmic phosphodiesterase GlpQ. GP-GDEs are involved in glycerol metabolism and catalyze the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. In E. coli, there are two major G3P uptake systems: Glp and Ugp, which contain genes coding for two different GP-GDEs. GlpQ gene from the glp operon codes for a periplasmic phosphodiesterase GlpQ. GlpQ is a dimeric enzyme that hydrolyzes periplasmic glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GPG), glycerophosphoinositol (GPI),
Probab=20.67 E-value=3e+02 Score=23.85 Aligned_cols=42 Identities=12% Similarity=0.223 Sum_probs=32.0
Q ss_pred hHHHHHHHhhcC------ceEEEEecCHHHHHHHhh-cCCccEEEEeec
Q 029889 139 ADDCLVERVTQH------KCFIVATCDRDLKRRIRK-VRSTDLYLGTAF 180 (186)
Q Consensus 139 addCI~~~v~~~------~~yiVATnD~~LrrrlRk-ipGVPiiyi~~~ 180 (186)
..+.+++++.+. ...+|.+-|.+.-+++|+ .|.+|+.++...
T Consensus 148 ~~~~v~~~l~~~~~~~~~~~v~i~SF~~~~L~~~r~~~p~~~~~~L~~~ 196 (296)
T cd08559 148 IEEKLLEVLKKYGYTGKNDPVFIQSFEPESLKRLRNETPDIPLVQLIDY 196 (296)
T ss_pred HHHHHHHHHHHcCCCCCCCCEEEecCCHHHHHHHHHhCCCCcEEEEecC
Confidence 345677777653 457999999998899986 589999988643
No 81
>PRK11440 putative hydrolase; Provisional
Probab=20.66 E-value=1e+02 Score=24.58 Aligned_cols=20 Identities=15% Similarity=0.109 Sum_probs=15.0
Q ss_pred HHHHHHHhhcCCccEEEEeec
Q 029889 160 RDLKRRIRKVRSTDLYLGTAF 180 (186)
Q Consensus 160 ~~LrrrlRkipGVPiiyi~~~ 180 (186)
..|.+..|+. |+||||++..
T Consensus 38 ~~l~~~ar~~-g~pVi~~~~~ 57 (188)
T PRK11440 38 ARLAAKFRAS-GSPVVLVRVG 57 (188)
T ss_pred HHHHHHHHHc-CCcEEEEecc
Confidence 3567788887 9999988643
No 82
>PRK04358 hypothetical protein; Provisional
Probab=20.17 E-value=1.1e+02 Score=26.43 Aligned_cols=47 Identities=21% Similarity=0.197 Sum_probs=31.9
Q ss_pred EEEeehHHHHHH-HH--cC-CChHHhHHHhhc--------ccceeeecHHHHHHHHHhc
Q 029889 66 RVLVDTNFINFS-IQ--NK-LDLEKGMMDCLY--------AKCTPCITDCVMAELEKLG 112 (186)
Q Consensus 66 ~VLvDtNFl~~~-~~--~k-ldl~~~l~~~L~--------~k~~~~iT~CVi~ELekLg 112 (186)
+.++||+.+..+ +. ++ =|+.+.+...|. ....+|+|..|+.||...-
T Consensus 5 rfVLDTS~fT~p~vr~~fg~e~l~ea~~~~l~Lia~arl~l~is~YmPpSVy~El~~f~ 63 (217)
T PRK04358 5 RFVLDTSAFTDPDVREQFGVEDLEEAVEKFLDLIARARLKLGISCYMPPSVYKELRGFL 63 (217)
T ss_pred EEEeeccccCCHHHHHHcCCCCHHHHHHHHHHHHHHhhhccCceEEcCHHHHHHHHHHH
Confidence 678999987544 22 34 245555554443 2467899999999999874
No 83
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=20.10 E-value=2.6e+02 Score=24.69 Aligned_cols=42 Identities=10% Similarity=-0.101 Sum_probs=31.0
Q ss_pred ChHHHHHHHhhcC----ceEEEEecCHHHHHHHhhcCCccEEEEeec
Q 029889 138 YADDCLVERVTQH----KCFIVATCDRDLKRRIRKVRSTDLYLGTAF 180 (186)
Q Consensus 138 ~addCI~~~v~~~----~~yiVATnD~~LrrrlRkipGVPiiyi~~~ 180 (186)
+--..|++.+... +...|.||.+++..++++. |||+.++...
T Consensus 105 ~nl~al~~~~~~~~l~~~i~~visn~~~~~~~A~~~-gIp~~~~~~~ 150 (289)
T PRK13010 105 HCLNDLLYRWRMGELDMDIVGIISNHPDLQPLAVQH-DIPFHHLPVT 150 (289)
T ss_pred ccHHHHHHHHHCCCCCcEEEEEEECChhHHHHHHHc-CCCEEEeCCC
Confidence 3345566665432 4578889999999999998 9999987543
Done!