Query 029889
Match_columns 186
No_of_seqs 211 out of 505
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 08:00:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029889.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029889hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1o4w_A PIN (PILT N-terminus) d 99.9 3.3E-23 1.1E-27 161.6 11.8 122 55-185 13-143 (147)
2 3ix7_A Uncharacterized protein 99.0 3.1E-09 1.1E-13 83.0 9.8 101 67-179 8-124 (134)
3 2dok_A Telomerase-binding prot 98.9 9.4E-09 3.2E-13 82.9 9.1 108 64-179 12-178 (186)
4 3i8o_A KH domain-containing pr 98.7 4.6E-08 1.6E-12 77.1 9.1 110 66-182 5-135 (142)
5 2lcq_A Putative toxin VAPC6; P 97.2 0.00013 4.5E-09 57.3 2.8 93 66-178 12-122 (165)
6 3tnd_A TRNA(FMet)-specific end 96.4 0.023 7.9E-07 41.5 8.9 100 66-175 3-129 (132)
7 3zvk_A VAPC2, toxin of toxin-a 96.2 0.018 6.2E-07 42.2 7.8 102 66-175 2-130 (134)
8 3h87_A Putative uncharacterize 95.9 0.047 1.6E-06 42.6 9.0 115 61-182 15-154 (156)
9 1v96_A Hypothetical protein PH 95.6 0.038 1.3E-06 41.2 7.0 104 65-176 5-132 (149)
10 2fe1_A Conserved hypothetical 94.7 0.058 2E-06 41.1 5.8 104 66-173 27-156 (156)
11 1w8i_A Putative VAPC ribonucle 94.4 0.12 4.2E-06 39.0 7.0 98 66-164 2-126 (156)
12 2hwy_A Protein SMG5; RNA degra 93.3 0.12 4.2E-06 41.2 5.4 51 66-122 4-57 (164)
13 2h1c_A Trafficking protein B; 92.8 0.5 1.7E-05 33.9 7.7 99 67-175 2-134 (139)
14 3dbo_B Uncharacterized protein 90.4 0.43 1.5E-05 36.5 5.3 104 62-175 18-148 (150)
15 1v8p_A Hypothetical protein PA 78.1 11 0.00038 28.8 8.1 93 67-169 30-145 (158)
16 2wp8_J Exosome complex exonucl 77.6 11 0.00036 37.4 9.6 110 61-178 58-195 (977)
17 2xpn_B SPT6, chromatin structu 54.1 1.8 6.2E-05 24.1 -0.7 21 51-72 2-22 (26)
18 1wik_A Thioredoxin-like protei 40.9 16 0.00055 25.4 2.4 31 154-184 50-83 (109)
19 8tfv_A Protein (thanatin); bac 39.8 10 0.00035 19.9 0.9 11 171-181 5-15 (21)
20 3zyw_A Glutaredoxin-3; metal b 38.7 17 0.00058 25.8 2.3 28 157-184 54-84 (111)
21 2wul_A Glutaredoxin related pr 38.7 13 0.00044 27.5 1.6 32 153-184 55-89 (118)
22 2wem_A Glutaredoxin-related pr 37.1 19 0.00065 26.1 2.4 31 154-184 56-89 (118)
23 3ipz_A Monothiol glutaredoxin- 37.1 19 0.00065 25.3 2.3 28 157-184 56-86 (109)
24 3gx8_A Monothiol glutaredoxin- 36.3 24 0.00081 25.5 2.8 29 156-184 56-87 (121)
25 2ct6_A SH3 domain-binding glut 35.9 20 0.00067 25.3 2.2 31 154-184 44-85 (111)
26 2pz0_A Glycerophosphoryl diest 34.9 86 0.0029 25.0 6.2 81 99-180 72-175 (252)
27 1t1v_A SH3BGRL3, SH3 domain-bi 34.6 19 0.00066 24.2 1.9 31 154-184 38-73 (93)
28 2yan_A Glutaredoxin-3; oxidore 34.5 25 0.00086 24.1 2.6 32 153-184 51-85 (105)
29 2wci_A Glutaredoxin-4; redox-a 34.0 25 0.00085 26.2 2.6 32 153-184 69-103 (135)
30 3v32_B Ribonuclease ZC3H12A; r 32.8 55 0.0019 26.1 4.6 22 137-159 112-133 (185)
31 2dk4_A PRE-mRNA-splicing facto 32.7 8.3 0.00029 26.9 -0.2 25 153-178 23-47 (76)
32 1vd6_A Glycerophosphoryl diest 29.6 2E+02 0.0067 22.3 7.9 80 99-179 63-152 (224)
33 3qmx_A Glutaredoxin A, glutare 28.1 74 0.0025 21.7 4.2 32 153-184 45-80 (99)
34 1o1z_A GDPD, glycerophosphodie 25.7 1.7E+02 0.0058 23.1 6.5 78 98-180 72-154 (234)
35 2ns5_A Partitioning-defective 24.4 34 0.0012 24.2 1.7 45 114-159 35-82 (85)
36 3rhb_A ATGRXC5, glutaredoxin-C 22.4 35 0.0012 23.5 1.5 25 160-184 59-86 (113)
37 1u6t_A SH3 domain-binding glut 21.5 49 0.0017 24.5 2.2 32 153-184 35-77 (121)
38 1ul1_X Flap endonuclease-1; pr 21.0 46 0.0016 28.9 2.3 28 138-165 157-184 (379)
39 4fcu_A 3-deoxy-manno-octuloson 20.2 79 0.0027 25.5 3.4 32 151-183 43-74 (253)
No 1
>1o4w_A PIN (PILT N-terminus) domain; structural genomics, joint CEN structural genomics, JCSG, protein structure initiative, PS translation; 1.90A {Archaeoglobus fulgidus} SCOP: c.120.1.1
Probab=99.89 E-value=3.3e-23 Score=161.59 Aligned_cols=122 Identities=25% Similarity=0.289 Sum_probs=99.2
Q ss_pred HHHhhCCCCCeE-EEeehHHHHHHHHcCCChHHhHHHhhcccceeeecHHHHHHHHHhch--------hhHHHHHhccCC
Q 029889 55 FTHNTALGPPYR-VLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEKLGQ--------KYRVALRIAKDP 125 (186)
Q Consensus 55 y~~n~gf~~PY~-VLvDtNFl~~~~~~kldl~~~l~~~L~~k~~~~iT~CVi~ELekLg~--------k~r~Al~lak~~ 125 (186)
...|||||+||+ +|+|||+++.++..+.++.+.+.+++. ..++||.||+.||+.+.. ..+.++.++.
T Consensus 13 ~~~~~~~~~pmk~vvLDTNvli~~~~~~~~~~~~l~~~l~--~~~~I~~~vl~EL~~~~~~~~~~~~~~~~~~~~ll~-- 88 (147)
T 1o4w_A 13 MEADRGRNNKVRCAVVDTNVLMYVYLNKADVVGQLREFGF--SRFLITASVKRELEKLEMSLRGKEKVAARFALKLLE-- 88 (147)
T ss_dssp ---------CCEEEEECHHHHHHHHHHTCCHHHHHHHTTE--EEEEEEHHHHHHHHHHHHHCCHHHHHHHHHHHHHHT--
T ss_pred hhhhhccCCCCCEEEEEhhHHHHHHHcCchHHHHHHHhcc--CCEEEcHHHHHHHHHHHhccCcchHHHHHHHHHHHh--
Confidence 467999999999 999999999999999999999999875 789999999999999863 3455677777
Q ss_pred CceeeecCCCCCChHHHHHHHhhcCceEEEEecCHHHHHHHhhcCCccEEEEeeccccCC
Q 029889 126 RFERLPCTHKGTYADDCLVERVTQHKCFIVATCDRDLKRRIRKVRSTDLYLGTAFHDIGI 185 (186)
Q Consensus 126 ~~e~~kC~H~g~~addCI~~~v~~~~~yiVATnD~~LrrrlRkipGVPiiyi~~~~~~~~ 185 (186)
.++.++|+ .+ + |+||++.+..++ ++|+|+|++|+++++.. |||++|+++.....+
T Consensus 89 ~~~vv~~~-~~-~-D~~Ila~A~~~~-~~LvT~D~~l~~~a~~~-Gv~vi~~~~~~~~~~ 143 (147)
T 1o4w_A 89 HFEVVETE-SE-G-DPSLIEAAEKYG-CILITNDKELKRKAKQR-GIPVGYLKEDKRVFV 143 (147)
T ss_dssp TSEEECCS-SC-S-HHHHHHHHHHHT-CEEECCCHHHHHHHHHT-TCCEECCCCCCCCCC
T ss_pred cCcEeeCC-CC-c-hHHHHHHHHHhC-CEEEECCHHHHHHHHHC-CCeEEEecCCcEEEE
Confidence 46788887 45 7 999999998887 79999999999999999 999999999877654
No 2
>3ix7_A Uncharacterized protein TTHA0540; unknown function, thermus thermophilus HB8, structural genom 2, protein structure initiative; HET: MSE; 2.15A {Thermus thermophilus}
Probab=98.97 E-value=3.1e-09 Score=82.97 Aligned_cols=101 Identities=19% Similarity=0.166 Sum_probs=73.3
Q ss_pred EEeehHHHHHHHHcCCChHHhHHHhhccc---ceeeecHHHHHHHHHhch--------hhHHHHHhccC----CCceeee
Q 029889 67 VLVDTNFINFSIQNKLDLEKGMMDCLYAK---CTPCITDCVMAELEKLGQ--------KYRVALRIAKD----PRFERLP 131 (186)
Q Consensus 67 VLvDtNFl~~~~~~kldl~~~l~~~L~~k---~~~~iT~CVi~ELekLg~--------k~r~Al~lak~----~~~e~~k 131 (186)
.++|||+|+.. .+.+++... -.++||.+|++||+.+.. +-+.+|++.+. ..++...
T Consensus 8 ~vlDTSviIdG---------ri~~~~~~gf~eg~liIP~~Vl~ELq~lA~s~d~~~r~rGr~gL~iL~~L~~~~~vei~~ 78 (134)
T 3ix7_A 8 KVLDTSVLVDG---------RVAEVAAVGFLEGPLWVPHFVLKELQHFADSQDPLRRAKGRRGLETLERLREAAPLEVLE 78 (134)
T ss_dssp EEECHHHHHHC---------HHHHHHTTTCCCSCEEEEHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHSCEEEEC
T ss_pred eEcccceEEec---------HHHHHHHhccccCceecHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHhcCCEEEeC
Confidence 47799999854 222222211 269999999999999962 24556666552 1134432
Q ss_pred cCCC-CCChHHHHHHHhhcCceEEEEecCHHHHHHHhhcCCccEEEEee
Q 029889 132 CTHK-GTYADDCLVERVTQHKCFIVATCDRDLKRRIRKVRSTDLYLGTA 179 (186)
Q Consensus 132 C~H~-g~~addCI~~~v~~~~~yiVATnD~~LrrrlRkipGVPiiyi~~ 179 (186)
+.. +..+|+.|++++.+.++ +|.|+|..|++.++.. |||++|++.
T Consensus 79 -~~~~~~~vD~~ll~lA~~~~~-~lvTnD~~L~kvA~~~-GI~Vl~l~~ 124 (134)
T 3ix7_A 79 -TTPKGESVDEKLLFLARDLEA-ALVTNDHALLQMARIY-GVKALSIQA 124 (134)
T ss_dssp -CCCSCSSHHHHHHHHHHHTTC-EEEESCHHHHHHHHHT-TCCEEEHHH
T ss_pred -CCCCcccHHHHHHHHHHHhCC-EEEeCCHHHHHHHHHC-CCeEEehHH
Confidence 222 24799999999999885 9999999999999999 999999864
No 3
>2dok_A Telomerase-binding protein EST1A; telomerase-associated protein, unknown function; 1.80A {Homo sapiens} PDB: 2hww_A 2hwx_A
Probab=98.86 E-value=9.4e-09 Score=82.93 Aligned_cols=108 Identities=18% Similarity=0.150 Sum_probs=73.7
Q ss_pred CeEEEeehHHHHHHHHcCCChHHhHHHhhc-ccceeeecHHHHHHHHHhch-----------------hhHHHHHhccC-
Q 029889 64 PYRVLVDTNFINFSIQNKLDLEKGMMDCLY-AKCTPCITDCVMAELEKLGQ-----------------KYRVALRIAKD- 124 (186)
Q Consensus 64 PY~VLvDtNFl~~~~~~kldl~~~l~~~L~-~k~~~~iT~CVi~ELekLg~-----------------k~r~Al~lak~- 124 (186)
|..+++|||+|+.. .+.|.++.. +...++||..|+.||+.+.. ..|.|+++..+
T Consensus 12 ~~~~VlDTNvLl~~-------~~~l~~~~~~~~~~viIP~~VleELd~lk~~~~~~~~~~~~~~~~~~~AR~a~~~L~~~ 84 (186)
T 2dok_A 12 PLFLVPDTNGFIDH-------LASLARLLESRKYILVVPLIVINELDGLAKGQETDHRAGGYARVVQEKARKSIEFLEQR 84 (186)
T ss_dssp EEEEEECHHHHHHH-------HHHHHHHHHHTSSEEEEEHHHHHHHHHHHC-------CCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEhHHHHcC-------HHHHHHHHcCCCeEEEECHHHHHHHHHhccCCCccccccchhHHHHHHHHHHHHHHHHH
Confidence 45689999999776 344555443 45889999999999999832 34555554432
Q ss_pred -----CCcee----------eecCCC-----CCChHHHHHHHhhcC--------------------ceEEEEecCHHHHH
Q 029889 125 -----PRFER----------LPCTHK-----GTYADDCLVERVTQH--------------------KCFIVATCDRDLKR 164 (186)
Q Consensus 125 -----~~~e~----------~kC~H~-----g~~addCI~~~v~~~--------------------~~yiVATnD~~Lrr 164 (186)
+.+.. +...+. ...+|+.|++.+... ...++.|+|..||.
T Consensus 85 ~~~~~~~i~~~~~~g~~l~~v~~~~~~~~~~~~~~D~~IL~~a~~l~~~~~~~~~~~~~~~~~~~~~~vvLvTnD~nLr~ 164 (186)
T 2dok_A 85 FESRDSCLRALTSRGNELESIAFRSEDITGQLGNNDDLILSCCLHYCKDKAKDFMPASKEEPIRLLREVVLLTDDRNLRV 164 (186)
T ss_dssp HHTTCTTEEEECTTSCEESCCTTCCCCC----CCHHHHHHHHHHTTCCCCGGGGCCC---CCCEEEEEEEEECCCHHHHH
T ss_pred HhhCCCeEEEEeccCcccccccccccccccCCCCccHHHHHHHHHHHHhcccccccccccccccCCCcEEEEeCcHHHHH
Confidence 11110 001111 237899999998631 14789999999999
Q ss_pred HHhhcCCccEEEEee
Q 029889 165 RIRKVRSTDLYLGTA 179 (186)
Q Consensus 165 rlRkipGVPiiyi~~ 179 (186)
+++.. |||++.++.
T Consensus 165 KA~~~-Gi~~~~~~~ 178 (186)
T 2dok_A 165 KALTR-NVPVRDIPA 178 (186)
T ss_dssp HHHHT-TCCEECHHH
T ss_pred HHHHC-CCeeCcHHH
Confidence 99999 999987653
No 4
>3i8o_A KH domain-containing protein MJ1533; APC89320.5, methanocaldococcus jannaschii DSM 2661, structural genomics, PSI-2; 2.64A {Methanocaldococcus jannaschii}
Probab=98.73 E-value=4.6e-08 Score=77.06 Aligned_cols=110 Identities=16% Similarity=0.092 Sum_probs=77.2
Q ss_pred EEEeehHHHHHHHHcCCChHHhHHHhhcccceeeecHHHHHHHHHhchh----hHHHHHhccC---------CCceeeec
Q 029889 66 RVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEKLGQK----YRVALRIAKD---------PRFERLPC 132 (186)
Q Consensus 66 ~VLvDtNFl~~~~~~kldl~~~l~~~L~~k~~~~iT~CVi~ELekLg~k----~r~Al~lak~---------~~~e~~kC 132 (186)
.+++|||.|+.-. +.+.+..-+.....++||..|++||+.+... -+.+|++++. ..++...-
T Consensus 5 ~~vlDTSviIdGr-----I~~~~~~g~leg~~iiIP~~Vl~EL~~~a~~~r~~GrrGLe~L~~L~~~~~~~~i~vei~~~ 79 (142)
T 3i8o_A 5 KVCVDTCVVIDGR-----ITELIERGKLKDATIIIPEAVVSELEYQANMGREIGYKGIEELRKLIEKASEHNIKVEYYGE 79 (142)
T ss_dssp EEEECHHHHHTTH-----HHHHHHTTTTTTCEEEEEHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHTTCCEEEESC
T ss_pred EEEeecceEEEcH-----HHHHHHcCCccCCeEEehHHHHHHHHHHHHccchhhHHHHHHHHHHHHHhhccCceEEEecc
Confidence 6899999998541 3333333333335799999999999999542 3455555441 01121100
Q ss_pred C-------C-CCCChHHHHHHHhhcCceEEEEecCHHHHHHHhhcCCccEEEEeeccc
Q 029889 133 T-------H-KGTYADDCLVERVTQHKCFIVATCDRDLKRRIRKVRSTDLYLGTAFHD 182 (186)
Q Consensus 133 ~-------H-~g~~addCI~~~v~~~~~yiVATnD~~LrrrlRkipGVPiiyi~~~~~ 182 (186)
. + .+..+|+-|+++|.+.++ .|.|+|..|++.++.. |||++|+++..+
T Consensus 80 r~~~~~i~~~~~~~vD~~l~~lA~~~~a-~lvTnD~~l~kvA~~~-GI~V~~l~~~~~ 135 (142)
T 3i8o_A 80 RPTREEIFLAKSGEIDAMIRKVAKETNS-ILLTSDWIQYNLAKAQ-GIEAYFLEAAEE 135 (142)
T ss_dssp CCCHHHHHSCCSSSHHHHHHHHHHHTTC-EEEESCHHHHHHHHHT-TCCEEECCCCCC
T ss_pred cCchhhhccccCCcHHHHHHHHHHHhCC-EEEcCCHHHHHHHHHc-CCEEEEeccccc
Confidence 0 1 124789999999999884 8889999999999999 999999998765
No 5
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=97.25 E-value=0.00013 Score=57.28 Aligned_cols=93 Identities=12% Similarity=0.083 Sum_probs=63.1
Q ss_pred EEEeehHHHHHHHHcCCChHHhHHHhhcccceeeecHHHHHHHHHhchhhHHHHHhcc-CCCceeee-c-----------
Q 029889 66 RVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEKLGQKYRVALRIAK-DPRFERLP-C----------- 132 (186)
Q Consensus 66 ~VLvDtNFl~~~~~~kldl~~~l~~~L~~k~~~~iT~CVi~ELekLg~k~r~Al~lak-~~~~e~~k-C----------- 132 (186)
.+|+|||.|+... ++ .++||..|+.||.... .+..+..+. ...++... .
T Consensus 12 ~~VlDTs~lI~~~----~~------------~l~~p~~V~~El~~~~--~r~~l~~l~~~~~l~v~~~~~~~i~~v~~~~ 73 (165)
T 2lcq_A 12 TLVLDSSVFIQGI----DI------------EGYTTPSVVEEIKDRE--SKIFLESLISAGKVKIAEPSKESIDRIIQVA 73 (165)
T ss_dssp SCEECHHHHHHTC----CC------------CEEECHHHHTTCCSSH--HHHHHHHHHHTTSEEECCCCHHHHHHHHHHH
T ss_pred EEEEcChHHHcCC----CC------------CEEEChhhHHhhcCHH--HHHHHHHhhccCCEEEecCCHHHHHHHHHHH
Confidence 4799999999853 11 7899999999996432 222332221 10122210 0
Q ss_pred ---CC-CC-CChHHHHHHHhhcCceEEEEecCHHHHHHHhhcCCccEEEEe
Q 029889 133 ---TH-KG-TYADDCLVERVTQHKCFIVATCDRDLKRRIRKVRSTDLYLGT 178 (186)
Q Consensus 133 ---~H-~g-~~addCI~~~v~~~~~yiVATnD~~LrrrlRkipGVPiiyi~ 178 (186)
+. .+ ..+|..++.++.+.+. .|.|+|..|++.++.. ||+++.+.
T Consensus 74 ~~~gd~~~Ls~~D~~lIaLA~~l~~-~lvT~D~~l~~vA~~~-Gv~v~~~~ 122 (165)
T 2lcq_A 74 KETGEVNELSKADIEVLALAYELKG-EIFSDDYNVQNIASLL-GLRFRTLK 122 (165)
T ss_dssp HHHSCSSCSCHHHHHHHHHHHHHTC-CEECCCHHHHHHHHHT-TCCEECCS
T ss_pred HHcCCcccCCHHHHHHHHhHHHhCC-eEEcCcHHHHHHHHHC-CCeEEchh
Confidence 00 01 2488999999988774 8889999999999999 99999776
No 6
>3tnd_A TRNA(FMet)-specific endonuclease VAPC; PIN domain, spovt/ABRB-like domain, ribonuclease, DNA-bindin translation; 2.70A {Shigella flexneri}
Probab=96.36 E-value=0.023 Score=41.48 Aligned_cols=100 Identities=20% Similarity=0.267 Sum_probs=61.6
Q ss_pred EEEeehHHHHHHHHcCCC-hHHhHHHhhcccceeeecHHHHHHHHHhchh------hHHHH-HhccCCCceeeecC----
Q 029889 66 RVLVDTNFINFSIQNKLD-LEKGMMDCLYAKCTPCITDCVMAELEKLGQK------YRVAL-RIAKDPRFERLPCT---- 133 (186)
Q Consensus 66 ~VLvDtNFl~~~~~~kld-l~~~l~~~L~~k~~~~iT~CVi~ELekLg~k------~r~Al-~lak~~~~e~~kC~---- 133 (186)
.+|+|||.++..+...-+ +.+.+.... -.++|+.-++.|+...-.+ ....+ .+.. .++.++-+
T Consensus 3 ~~llDTnvli~~~~~~~~~~~~~l~~~~---~~~~iS~i~~~El~~~~~~~~~~~~~~~~l~~~l~--~~~il~~~~~~~ 77 (132)
T 3tnd_A 3 KFMLDTNICIFTIKNKPASVRERFNLNQ---GKMCISSVTLMELIYGAEKSQMPERNLAVIEGFVS--RIDVLDYDAAAA 77 (132)
T ss_dssp CEEECHHHHHHHHHHCCHHHHHHHHHHT---TSEEEEHHHHHHHHHHHHTSSCHHHHHHHHHHHHH--TSEEECBCHHHH
T ss_pred eeeeeHHHHHHHHcCCcHHHHHHHHhcC---CCEEeeHHHHHHHHHHHHhcCcHHHHHHHHHHHHH--cCcccCCCHHHH
Confidence 489999999999876643 444444432 3689999999999754211 11112 1222 34444432
Q ss_pred -----------CCC--CChHHHH-HHHhhcCceEEEEecC-HHHHHHHhhcCCccEE
Q 029889 134 -----------HKG--TYADDCL-VERVTQHKCFIVATCD-RDLKRRIRKVRSTDLY 175 (186)
Q Consensus 134 -----------H~g--~~addCI-~~~v~~~~~yiVATnD-~~LrrrlRkipGVPii 175 (186)
|.| ....||+ ...+..+++ .+.|.| +++ ..+||+.+.
T Consensus 78 ~~a~~l~~~~~~~g~~~~~~D~lIaA~A~~~~~-~lvT~d~~dF----~~~~gl~v~ 129 (132)
T 3tnd_A 78 THTGQIRAELARQGRPVGPFDQMIAGHARSRGL-IIVTNNTREF----ERVGGLRTE 129 (132)
T ss_dssp HHHHHHHHHHHHHTCCCCHHHHHHHHHHHHTTC-EEEESCCHHH----HTSTTCCEE
T ss_pred HHHHHHHHHHHHCCCCCCchHHHHHHHHHHcCC-EEEECCHHHh----CCCCCCeec
Confidence 112 2444454 466677886 788999 876 457899875
No 7
>3zvk_A VAPC2, toxin of toxin-antitoxin system; antitoxin-toxin-DNA complex, protein-DNA complex; HET: DNA MES; 2.50A {Rickettsia felis}
Probab=96.25 E-value=0.018 Score=42.19 Aligned_cols=102 Identities=20% Similarity=0.204 Sum_probs=61.8
Q ss_pred EEEeehHHHHHHHHcCCC-hHHhHHHhhcccceeeecHHHHHHHHHhchh------hHHHH-HhccCCCceeeecCC---
Q 029889 66 RVLVDTNFINFSIQNKLD-LEKGMMDCLYAKCTPCITDCVMAELEKLGQK------YRVAL-RIAKDPRFERLPCTH--- 134 (186)
Q Consensus 66 ~VLvDtNFl~~~~~~kld-l~~~l~~~L~~k~~~~iT~CVi~ELekLg~k------~r~Al-~lak~~~~e~~kC~H--- 134 (186)
.+|+|||.++..+...-. +.+.+..+.. .-.++|+.-++.|+...-.+ ....+ .+.. .++.++.+.
T Consensus 2 ~~llDTnvli~~~~~~~~~~~~~l~~~~~-~~~~~is~i~~~El~~~~~~~~~~~~~~~~l~~~l~--~~~il~~~~~~~ 78 (134)
T 3zvk_A 2 IYMLGTNICVYAINKHPDSYYNNLELLAK-NNTIAISSIVLAELQYGVSKSKKKEQNQSKLDIFLS--RLEIIDFSAKCT 78 (134)
T ss_dssp EEEECHHHHHHHHHHCCHHHHHHHHHHHT-TSEEEEEHHHHHHHHHHHHHSSCHHHHHHHHHHHHT--TSEEECBCHHHH
T ss_pred eEEeeHHHHHHHHcCCcHHHHHHHHhcCc-CCcEEeeheeHHHHHHHHHhcCCHHHHHHHHHHHHh--cCceecCCHHHH
Confidence 589999999999876643 3344444332 14789999999999754211 11222 1222 355554421
Q ss_pred ------------CC--CC-hHHHHHHHhhcCceEEEEecC-HHHHHHHhhcCCccEE
Q 029889 135 ------------KG--TY-ADDCLVERVTQHKCFIVATCD-RDLKRRIRKVRSTDLY 175 (186)
Q Consensus 135 ------------~g--~~-addCI~~~v~~~~~yiVATnD-~~LrrrlRkipGVPii 175 (186)
.| .. .|--|...+..+++ .+.|.| +++. .+||+.++
T Consensus 79 ~~a~~l~~~~~~~g~~~~~~D~lIaA~A~~~~~-~lvT~d~~df~----~~~gl~~~ 130 (134)
T 3zvk_A 79 FYYGELRTELEQKGLIIGNNDLLIASHAIAENA-TLVTNNIKEFK----RIPNLILE 130 (134)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTC-EEEESSTTTSC----SCTTCEEE
T ss_pred HHHHHHHHHHHHcCCCCCccHHHHHHHHHHCCC-EEEECCHHHhc----CCCCCeee
Confidence 12 23 44444466677886 788999 7664 57888875
No 8
>3h87_A Putative uncharacterized protein; toxin antitoxin complex, vapbc complex, RHH motif, structura genomics; 1.49A {Mycobacterium tuberculosis}
Probab=95.90 E-value=0.047 Score=42.56 Aligned_cols=115 Identities=15% Similarity=0.027 Sum_probs=69.0
Q ss_pred CCCCeEEEeehHHHHHHHHcCCChHHhHHHhhcccceeeecHHHHHHHHHhch---hhHHHHHh--ccCCCceeeecC--
Q 029889 61 LGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEKLGQ---KYRVALRI--AKDPRFERLPCT-- 133 (186)
Q Consensus 61 f~~PY~VLvDtNFl~~~~~~kldl~~~l~~~L~~k~~~~iT~CVi~ELekLg~---k~r~Al~l--ak~~~~e~~kC~-- 133 (186)
...+..+|||||.++..+... ....+.+.+.. -.++|+.-++.||..-.. .......+ .. .++.++.+
T Consensus 15 ~~~~~~~LLDTnvli~~l~~~--~~~~l~~~~~~-~~l~iS~it~~El~~G~~~~~~~~~l~~~~~L~--~~~vlp~d~~ 89 (156)
T 3h87_A 15 MVTDQRWLIDKSALVRLTDSP--DMEIWSNRIER-GLVHITGVTRLEVGFSAECGEIARREFREPPLS--AMPVEYLTPR 89 (156)
T ss_dssp --CCCCEEECHHHHTTGGGCT--THHHHHHHHHT-TCEEEEHHHHHHHHHHSSSHHHHHHHHHSTTGG--GSCEECCCHH
T ss_pred hhcCCCEEEEHHHHHHHHcCH--HHHHHHHhccC-CCEEEccccHHHHhhhhhCchHHHHHHHhhccc--CCCeecCCHH
Confidence 345668999999999987543 34556665543 247899999999975311 12222222 22 34444432
Q ss_pred -----------------CCCCChHHHHH-HHhhcCceEEEEecCHHHHHHHhhcCCccEEEEeeccc
Q 029889 134 -----------------HKGTYADDCLV-ERVTQHKCFIVATCDRDLKRRIRKVRSTDLYLGTAFHD 182 (186)
Q Consensus 134 -----------------H~g~~addCI~-~~v~~~~~yiVATnD~~LrrrlRkipGVPiiyi~~~~~ 182 (186)
|.+....||++ ..+..++ ..+.|+|+++.+--. +.|.|+-.+.....
T Consensus 90 ~a~~a~~i~~~l~~~G~~~~i~~~D~lIAAtA~~~g-l~LvT~d~dF~~i~~-~~~l~~~~~~~~~~ 154 (156)
T 3h87_A 90 IEDRALEVQTLLADRGHHRGPSIPDLLIAATAELSG-LTVLHVDKDFDAIAA-LTGQKTERLTHRPP 154 (156)
T ss_dssp HHHHHHHHHHHHHHTTCTTSSCHHHHHHHHHHHHHT-CEEEESCTHHHHHHH-HHCCCEEECCCC--
T ss_pred HHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHCC-CEEEEeChhhhhhhh-cCCCceEEecCCCC
Confidence 11224556655 4556677 577799999876544 44888887765543
No 9
>1v96_A Hypothetical protein PH0500; rossmann fold, tRNA synthetase, nucleotide binding protein, structural genomics; 1.75A {Pyrococcus horikoshii} SCOP: c.120.1.1 PDB: 1ye5_A 1y82_A
Probab=95.57 E-value=0.038 Score=41.16 Aligned_cols=104 Identities=13% Similarity=0.087 Sum_probs=60.2
Q ss_pred eEEEeehHHHHHHHHcCCChHHhHHHhhcccceeeecHHHHHHHHHhchh----hHHHH-HhccCCCceeeecC------
Q 029889 65 YRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEKLGQK----YRVAL-RIAKDPRFERLPCT------ 133 (186)
Q Consensus 65 Y~VLvDtNFl~~~~~~kldl~~~l~~~L~~k~~~~iT~CVi~ELekLg~k----~r~Al-~lak~~~~e~~kC~------ 133 (186)
-.+++|||.++..+. +-...+.+.+.+...++++.-++.|+...-.. -...+ .+.. .++.++.+
T Consensus 5 ~~~llDTnvli~~l~---~~~~~~~~~~~~~~~~~is~i~~~El~~~~~~~~~~~~~~~~~~l~--~~~il~~~~~~~~~ 79 (149)
T 1v96_A 5 PDITFDSLALIKMHS---QNMKRILEVTLAKFTVNLSIVTVYRYLTARAYLKKNIEAEFEILKD--IYNIVPLLDDIAIK 79 (149)
T ss_dssp SEEEECHHHHHHHTS---GGGHHHHHHHHHHCEEEEEHHHHHHHHHHC--CCSCHHHHHHHHHH--HSEEECCCHHHHHH
T ss_pred CEEEeehHHHHHHHc---cchHHHHHHHhcCCCEEeeHhhHHHHHHHHHhcCcchHHHHHHHHh--cCCeeCCCHHHHHH
Confidence 469999999999875 22234444444445689999999999854211 01111 1111 23333332
Q ss_pred -------C--CC--CChHHHHH-HHhhcCceEEEEecCH-HHHHHHhhcCCccEEE
Q 029889 134 -------H--KG--TYADDCLV-ERVTQHKCFIVATCDR-DLKRRIRKVRSTDLYL 176 (186)
Q Consensus 134 -------H--~g--~~addCI~-~~v~~~~~yiVATnD~-~LrrrlRkipGVPiiy 176 (186)
+ .| .+..||++ ..+..+++ .+.|.|. ++.+ +... |++++.
T Consensus 80 a~~l~~~~~~~g~~~~~~D~lIaA~A~~~~~-~lvT~D~kdf~~-i~~~-~i~~i~ 132 (149)
T 1v96_A 80 AAQIEANLIKKEITLDMEDIITATTAIYTNS-LLVTDDPKRYEP-IRRF-GLDTMP 132 (149)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHHHTC-EEEESCHHHHGG-GGGG-TCCEEE
T ss_pred HHHHHHHHHHCCCCCCHhHHHHHHHHHHcCC-EEEECCHHHHhh-hhhC-CeeecC
Confidence 0 12 34456655 66677786 6889995 6643 5555 777774
No 10
>2fe1_A Conserved hypothetical protein PAE0151; PIN domain, structural genomics, unknown function; 2.20A {Pyrobaculum aerophilum} SCOP: c.120.1.1
Probab=94.67 E-value=0.058 Score=41.07 Aligned_cols=104 Identities=16% Similarity=0.105 Sum_probs=62.7
Q ss_pred EEEeehHHHHHHHHcCCChHHhHHHhhcccceeeecHHHHHHHHHh-------ch----hhHHHHHh----ccCCCceee
Q 029889 66 RVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEKL-------GQ----KYRVALRI----AKDPRFERL 130 (186)
Q Consensus 66 ~VLvDtNFl~~~~~~kldl~~~l~~~L~~k~~~~iT~CVi~ELekL-------g~----k~r~Al~l----ak~~~~e~~ 130 (186)
.+++|||.++..+... +..+.+.+.+.+...++++.-++.|+... |+ ....++.. .....+...
T Consensus 27 ~ivlDTsvli~~l~~~-~~~~~a~~~l~~~~~~~is~~~~~Ev~~vl~r~~~~~~l~~~~~~~~l~~~~~~l~~l~i~~~ 105 (156)
T 2fe1_A 27 ELVVDASAIAALYVPE-ERSEQAERAVSQAQELHTLDLAAYEVANDLWKHARRGLLREDEASNMLEELWEFFKALKVHSY 105 (156)
T ss_dssp EEEECHHHHHTTSSSC-CCCHHHHHHHHHCSEEEEEHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSEEECG
T ss_pred eEEEEHHHHHHHHhCC-CCcHHHHHHHhhccCeehHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhcccccc
Confidence 5899999999987543 22355566665545789999999999642 11 12222222 221111111
Q ss_pred e----------cCCCCCChHHHH-HHHhhcCceEEEEecCHHHHHHHhhcCCcc
Q 029889 131 P----------CTHKGTYADDCL-VERVTQHKCFIVATCDRDLKRRIRKVRSTD 173 (186)
Q Consensus 131 k----------C~H~g~~addCI-~~~v~~~~~yiVATnD~~LrrrlRkipGVP 173 (186)
. -.| +.+..||+ +..+..+++ -++|.|++|.+..+.. |+|
T Consensus 106 ~~~~~~A~~l~~~~-~l~~~Dal~lA~A~~~~~-~LvT~D~~l~~~a~~~-Gi~ 156 (156)
T 2fe1_A 106 AEVLKDAFALALKH-GVTVYDAAYVALAEKIGG-KLLTLDRQLAEKFPAL-VTP 156 (156)
T ss_dssp GGTHHHHHHHHHHH-TCCHHHHHHHHHHHHHTC-EEECSCHHHHHHCTTT-BC-
T ss_pred hHHHHHHHHHHHHh-CcCHHHHHHHHHHHHcCC-CEEeCCHHHHHHHHHc-CCC
Confidence 1 011 32444554 567777776 4999999999998886 875
No 11
>1w8i_A Putative VAPC ribonuclease AF_1683; structural genomics, unknown function, hypothetical protein, PSI, protein structure initiative, MCSG; 2.10A {Archaeoglobus fulgidus} SCOP: c.120.1.1
Probab=94.37 E-value=0.12 Score=38.98 Aligned_cols=98 Identities=12% Similarity=-0.057 Sum_probs=58.5
Q ss_pred EEEeehHHHHHHHHcCCChHH----hHH-HhhcccceeeecHHHHHHHHHhch----hhHHHHHhc-cCCCceeeecC--
Q 029889 66 RVLVDTNFINFSIQNKLDLEK----GMM-DCLYAKCTPCITDCVMAELEKLGQ----KYRVALRIA-KDPRFERLPCT-- 133 (186)
Q Consensus 66 ~VLvDtNFl~~~~~~kldl~~----~l~-~~L~~k~~~~iT~CVi~ELekLg~----k~r~Al~la-k~~~~e~~kC~-- 133 (186)
.++||||+++..+...=...+ .+. .+..+...++|+.-|+.|+...-. .....++.. ..+.++.++.+
T Consensus 2 mi~lDTnvli~~l~~~~~~~~~a~~~l~~~~~~~~~~~~is~~vl~E~~~~l~~~~~~~~~~l~~l~~~~~~~v~~~~~~ 81 (156)
T 1w8i_A 2 AALIDTGIFFGFYSLKDVHHMDSVAIVVHAVEGKWGRLFVTNHILDETLTLLKYKKLPADKFLEGFVESGVLNIIYTDDE 81 (156)
T ss_dssp EEEECHHHHHHHHCTTSTTHHHHHHHHHHHHTTTTSEEEEEHHHHHHHHHHHHHTTCCHHHHHHHHTTTSSSEEECCCHH
T ss_pred eEEEEhHHHHHHHcCCcHhHHHHHHHHHHHHhcCCCcEEecHHHHHHHHHHHHhhHHHHHHHHHHHhhCCCeEEEeCCHH
Confidence 489999999999865433222 233 344446789999999999976522 222222222 11234443321
Q ss_pred ------------CC--CCChHHHH-HHHhhcCceEEEEecCHHHHH
Q 029889 134 ------------HK--GTYADDCL-VERVTQHKCFIVATCDRDLKR 164 (186)
Q Consensus 134 ------------H~--g~~addCI-~~~v~~~~~yiVATnD~~Lrr 164 (186)
+. +.+..||+ ...+..+++ .++|.|+++.+
T Consensus 82 ~~~~A~~l~~~~~~~~~l~~~Dali~A~A~~~g~-~l~T~D~dF~~ 126 (156)
T 1w8i_A 82 VERKALEVFKARVYEKGFSYTDAISEVVAEELKL-KLISYDSRFSL 126 (156)
T ss_dssp HHHHHHHHHHHTTTSTTCCHHHHHHHHHHHHHTC-EEECSCTTCSS
T ss_pred HHHHHHHHHHHHhccCCCCHhHHHHHHHHHHcCC-EEEEeCcccCc
Confidence 11 23444555 566777887 99999988765
No 12
>2hwy_A Protein SMG5; RNA degradation, decay, NMD, EST1A, P bodies, RNA binding protein; 2.75A {Homo sapiens}
Probab=93.32 E-value=0.12 Score=41.18 Aligned_cols=51 Identities=18% Similarity=0.206 Sum_probs=36.3
Q ss_pred EEEeehHHHHHHHHcCCChHHhHHHhhcccceeeecHHHHHHHHHhch---hhHHHHHhc
Q 029889 66 RVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEKLGQ---KYRVALRIA 122 (186)
Q Consensus 66 ~VLvDtNFl~~~~~~kldl~~~l~~~L~~k~~~~iT~CVi~ELekLg~---k~r~Al~la 122 (186)
..++|||+|+.. +++...|.+ .++..++||.-|+.||..|.+ .+|.|+++.
T Consensus 4 ylVlDTN~Li~~----l~~i~~l~~--~~~~~IvIP~~Vi~ELD~LK~~~~~AR~Air~L 57 (164)
T 2hwy_A 4 YLVPDTQALCHH----LPVIRQLAT--SGRFIVIIPRTVIDGLDLLKKEHPGARDGIRYL 57 (164)
T ss_dssp EEEECHHHHHHC----HHHHHHHHH--HSSSEEEECHHHHHHHHHHC-CCHHHHHHHHHH
T ss_pred eEEechHHHHhC----HHHHHHHHh--CCCcEEEEcHHHHHHHHHhccCCHHHHHHHHHH
Confidence 357899999875 233344432 257899999999999999954 367777665
No 13
>2h1c_A Trafficking protein B; DNA binding, PIN domain, RHH domain, gene regulation; 1.80A {Neisseria gonorrhoeae} SCOP: c.120.1.1 PDB: 2bsq_A* 2h1o_A*
Probab=92.79 E-value=0.5 Score=33.86 Aligned_cols=99 Identities=22% Similarity=0.240 Sum_probs=57.3
Q ss_pred EEeehHHHHHHHHcCCChHHhHHHhhc--ccceeeecHHHHHHHHHh-chh--------hHHHHHh--ccCCCc--eeee
Q 029889 67 VLVDTNFINFSIQNKLDLEKGMMDCLY--AKCTPCITDCVMAELEKL-GQK--------YRVALRI--AKDPRF--ERLP 131 (186)
Q Consensus 67 VLvDtNFl~~~~~~kldl~~~l~~~L~--~k~~~~iT~CVi~ELekL-g~k--------~r~Al~l--ak~~~~--e~~k 131 (186)
+++|||.++..+...-+ ....+.|. +...++|+.-++.|+... .+. ....++- .. .+ +.++
T Consensus 2 ~llDTnvli~~~~~~~~--~~~~~~l~~~~~~~~~is~~~~~El~~~~~~~~~~~~~~~~~~~l~~~l~~--~~~~~il~ 77 (139)
T 2h1c_A 2 ILLDTNVISEPLRPQPN--ERVVAWLDSLILEDVYLSAITVAELRLGVALLLNGKKKNVLHERLEQSILP--LFAGRILP 77 (139)
T ss_dssp EEECHHHHTGGGSSSCC--HHHHHHHHHSCGGGEEEEHHHHHHHHHHHHTCSCHHHHHHHHHHHHHTTGG--GGTTCEEC
T ss_pred EeeehHHHHHHHcCCCC--HHHHHHHHhCCcccEEeeHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHH--hccCCcCC
Confidence 68999999998765431 22333332 234689999999999754 221 1112221 12 23 4444
Q ss_pred cCC---------------CC--CChHHHH-HHHhhcCceEEEEecC-HHHHHHHhhcCCccEE
Q 029889 132 CTH---------------KG--TYADDCL-VERVTQHKCFIVATCD-RDLKRRIRKVRSTDLY 175 (186)
Q Consensus 132 C~H---------------~g--~~addCI-~~~v~~~~~yiVATnD-~~LrrrlRkipGVPii 175 (186)
.+. .| ....||+ ...+..+++ .+.|.| +++.+ + |++++
T Consensus 78 ~~~~~~~~a~~l~~~~~~~g~~~~~~D~liaA~A~~~~~-~lvT~d~~df~~----~-~l~~~ 134 (139)
T 2h1c_A 78 FDEPVAAIYAQIRSYAKTHGKEIAAADGYIAATAKQHSL-TVATRDTGSFFA----A-DVAVF 134 (139)
T ss_dssp CCHHHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHTC-EEECSCCHHHHH----T-TCCEE
T ss_pred CCHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHcCC-eEEECCHHHHhh----C-CCeee
Confidence 331 12 2444554 456667786 789999 77754 4 77765
No 14
>3dbo_B Uncharacterized protein; toxin antitoxin complex, vapbc, structural genomics, PSI-2, protein structure initiative; 1.76A {Mycobacterium tuberculosis}
Probab=90.41 E-value=0.43 Score=36.54 Aligned_cols=104 Identities=18% Similarity=0.147 Sum_probs=55.6
Q ss_pred CCCeEEEeehHHHHHHHHcCCChHHhHHHhhcccceeeecHHHHHHHHHh----chh--hHHHHH---hccCCCceeeec
Q 029889 62 GPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEKL----GQK--YRVALR---IAKDPRFERLPC 132 (186)
Q Consensus 62 ~~PY~VLvDtNFl~~~~~~kldl~~~l~~~L~~k~~~~iT~CVi~ELekL----g~k--~r~Al~---lak~~~~e~~kC 132 (186)
.+|-++|+|||.++..++..-.. . .+ ..-.++|+.-++.||..- +.. ....++ +.. .|+.++-
T Consensus 18 ~~~~~~LlDTnvlI~~l~g~~~~-~----~~-~~~~l~iS~It~~El~~G~~~~~~~~~~~~~l~~~~~l~--~~~ilp~ 89 (150)
T 3dbo_B 18 TTPAAGVLDTSVFIATESGRQLD-E----AL-IPDRVATTVVTLAELRVGVLAAATTDIRAQRLATLESVA--DMETLPV 89 (150)
T ss_dssp --CCEEEECSGGGBC-----CCC-G----GG-SCSEEEEEHHHHHHHHHHHHHCSSHHHHHHHHHHHHTTT--TBCEECC
T ss_pred cccCEEEEeHHHHHHHHcCCcch-h----hc-CCCcEEEchhHHHHHHHHHHhCcchHHHHHHHHHHHHhh--CCeEecc
Confidence 56778999999999887655322 2 22 345789999999998643 111 112232 222 4665554
Q ss_pred CC---------------CC--CChHHHH-HHHhhcCceEEEEecCHHHHHHHhhcCCccEE
Q 029889 133 TH---------------KG--TYADDCL-VERVTQHKCFIVATCDRDLKRRIRKVRSTDLY 175 (186)
Q Consensus 133 ~H---------------~g--~~addCI-~~~v~~~~~yiVATnD~~LrrrlRkipGVPii 175 (186)
+. .| ...-||+ ...+..++. .+.|+|+++.+ +-.+-|.+++
T Consensus 90 d~~~a~~a~~l~~~l~~~G~~~~~~D~lIaA~A~~~~~-~LvT~d~dF~~-i~~l~~l~~~ 148 (150)
T 3dbo_B 90 DDDAARMWARLRIHLAESGRRVRINDLWIAAVAASRAL-PVITQDDDFAA-LDGAASVEII 148 (150)
T ss_dssp CHHHHHHHHHHHHHHHHHTCCCBHHHHHHHHHHHHTTC-CEEESSSSGGG-GTTSTTCCEE
T ss_pred CHHHHHHHHHHHHHHHHcCCCCCCchHHHHHHHHHCCC-EEEECChhhhh-CCCccCceee
Confidence 31 12 2334554 456667774 78899976533 3333344543
No 15
>1v8p_A Hypothetical protein PAE2754; PIN-domain, tetramer, structural genomics, unknown function; 2.52A {Pyrobaculum aerophilum} SCOP: c.120.1.1 PDB: 1v8o_A
Probab=78.08 E-value=11 Score=28.77 Aligned_cols=93 Identities=15% Similarity=0.096 Sum_probs=56.7
Q ss_pred EEeehHHHHHHHHcCCChHHhHHHhhcccceeeecHHHHHHHHHhch-----------hhHHHHH-hccCCCceeeecCC
Q 029889 67 VLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEKLGQ-----------KYRVALR-IAKDPRFERLPCTH 134 (186)
Q Consensus 67 VLvDtNFl~~~~~~kldl~~~l~~~L~~k~~~~iT~CVi~ELekLg~-----------k~r~Al~-lak~~~~e~~kC~H 134 (186)
++||||.+...+.. .+ +.+.+....+++.-++.|+...-. ....++. +.. .++...-+.
T Consensus 30 ivvDTSvlv~~l~~----~~---~~l~~~~~~~ip~l~~~Ev~~vL~r~~r~~~l~~~~a~~~l~~ll~--~l~v~~~~~ 100 (158)
T 1v8p_A 30 YLVDASALYALAAH----YD---KWIKHREKLAILHLTIYEAGNALWKEARLGRVDWAAASRHLKKVLS--SFKVLEDPP 100 (158)
T ss_dssp EEECHHHHHHHTTC----HH---HHGGGGGGEEECHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHH--TSEECCCCC
T ss_pred EEeeHHHHHHHHHh----hH---HHHhhcCCEEeHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh--hCeEEeCcH
Confidence 89999999999743 22 333334568899999999865421 1222332 222 122222211
Q ss_pred ----------CCCChHHHH-HHHhhcCceEEEEecCHHHHHHHhhc
Q 029889 135 ----------KGTYADDCL-VERVTQHKCFIVATCDRDLKRRIRKV 169 (186)
Q Consensus 135 ----------~g~~addCI-~~~v~~~~~yiVATnD~~LrrrlRki 169 (186)
.|.+..||+ +..+...++ -+.|.|+.|.+.++++
T Consensus 101 ~~~A~~la~~~~Ls~yDA~~lAlA~~~g~-~L~T~D~~L~~~a~~~ 145 (158)
T 1v8p_A 101 LDEVLRVAVERGLTFYDASYAYVAESSGL-VLVTQDRELLAKTKGA 145 (158)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHTTC-EEECSCHHHHHHSTTC
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHhCC-eEEeCCHHHHHHHHhc
Confidence 033444554 677777886 6799999999998763
No 16
>2wp8_J Exosome complex exonuclease DIS3; nucleus, hydrolase, RNA-binding, exonucle binding, mitochondrion, rRNA processing; 3.00A {Saccharomyces cerevisiae}
Probab=77.55 E-value=11 Score=37.42 Aligned_cols=110 Identities=17% Similarity=0.116 Sum_probs=62.6
Q ss_pred CCCCeEEEeehHHHHHHHHcCCChHHhHHHhhcccceeeecHHHHHHHHHhchh-hHHHHHhccCCC----ceeeecC-C
Q 029889 61 LGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEKLGQK-YRVALRIAKDPR----FERLPCT-H 134 (186)
Q Consensus 61 f~~PY~VLvDtNFl~~~~~~kldl~~~l~~~L~~k~~~~iT~CVi~ELekLg~k-~r~Al~lak~~~----~e~~kC~-H 134 (186)
+..+..+++|||.++..+ |+++. . ..-..++|++-|+.|+...+.. |..--.+.+++. |-...-+ |
T Consensus 58 ~~~~~~~i~d~~v~l~~~----d~le~---~-~~~~~vii~qtv~~~v~~~~~~~y~rl~~l~~~~~~~~~~~vF~ne~~ 129 (977)
T 2wp8_J 58 PIGKHYVVLDTNVVLQAI----DLLEN---P-NCFFDVIVPQIVLDEVRNKSYPVYTRLRTLCRDSDDHKRFIVFHNEFS 129 (977)
T ss_dssp TTSBEEEEECHHHHHHHH----HHHTC---T-TTCCEEEEEHHHHHHHHHHCHHHHHHHHHHHHTCCSSCEEEEECTTTB
T ss_pred CCCCeEEEecHHHHHHHH----HHhhc---c-cccCCEEEEHHHHHHHHhcCHHHHHHHHHHhcCcCcCceEEEEccccc
Confidence 457788999999998862 23332 1 0224589999999999997654 665556666533 3332222 2
Q ss_pred CCC------------ChHHHHHHHhh---cC-----ceEEEEecCHHHHHHHhhc--CCccEEEEe
Q 029889 135 KGT------------YADDCLVERVT---QH-----KCFIVATCDRDLKRRIRKV--RSTDLYLGT 178 (186)
Q Consensus 135 ~g~------------~addCI~~~v~---~~-----~~yiVATnD~~LrrrlRki--pGVPiiyi~ 178 (186)
..+ ..|.+|...+. .| -..++.|+|++-+++.++. .|++++.+.
T Consensus 130 ~~t~~~~~~~es~~~r~~r~i~~~~~wy~~hl~~~~~~vv~~t~d~~~~~~~~~~~~~~~~~~s~~ 195 (977)
T 2wp8_J 130 EHTFVERLPNETINDRNDRAIRKTCQWYSEHLKPYDINVVLVTNDRLNREAATKEVESNIITKSLV 195 (977)
T ss_dssp TTTCCC-------CCHHHHHHHHHHHHHHHHHGGGTCEEEEEECC-----------CCCSCEEEHH
T ss_pred hhhcccCccCCChhhhhHHHHHHHHHHHHHhccccCCCEEEEeCCHHHHHHHhhhccCCcEEEEHH
Confidence 222 23567766552 12 1379999999999999881 499998764
No 17
>2xpn_B SPT6, chromatin structure modulator; transcription, elongation, histone chaperone, RNA polymerase mRNA export; 1.95A {Encephalitozoon cuniculi} PDB: 2xpo_B
Probab=54.12 E-value=1.8 Score=24.13 Aligned_cols=21 Identities=29% Similarity=0.634 Sum_probs=17.2
Q ss_pred hhhHHHHhhCCCCCeEEEeehH
Q 029889 51 SALFFTHNTALGPPYRVLVDTN 72 (186)
Q Consensus 51 ~~~fy~~n~gf~~PY~VLvDtN 72 (186)
|++||.. ||.++-|.-++..|
T Consensus 2 ~slFyEI-FGtG~EYrYile~~ 22 (26)
T 2xpn_B 2 SHMFFEI-FGTGEEYRYVLESD 22 (26)
T ss_pred CcEEEEE-ecCCceEEEEeecC
Confidence 5789988 99999999887653
No 18
>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1
Probab=40.93 E-value=16 Score=25.44 Aligned_cols=31 Identities=6% Similarity=-0.051 Sum_probs=21.6
Q ss_pred EEEecCHHHHHHHhh---cCCccEEEEeeccccC
Q 029889 154 IVATCDRDLKRRIRK---VRSTDLYLGTAFHDIG 184 (186)
Q Consensus 154 iVATnD~~LrrrlRk---ipGVPiiyi~~~~~~~ 184 (186)
+=.+.|.+++..+.+ .++||+||+.+.+-+|
T Consensus 50 vdi~~~~~~~~~l~~~~g~~~vP~ifi~g~~igG 83 (109)
T 1wik_A 50 FDILEDEEVRQGLKTFSNWPTYPQLYVRGDLVGG 83 (109)
T ss_dssp EESSSCHHHHHHHHHHHSCCSSCEEECSSSEEEC
T ss_pred EECCCCHHHHHHHHHHhCCCCCCEEEECCEEEcC
Confidence 334567777776654 4789999998876554
No 19
>8tfv_A Protein (thanatin); bactericidal, fungicidal, antimicrobial; NMR {Synthetic} SCOP: j.3.1.2
Probab=39.75 E-value=10 Score=19.87 Aligned_cols=11 Identities=0% Similarity=-0.112 Sum_probs=8.9
Q ss_pred CccEEEEeecc
Q 029889 171 STDLYLGTAFH 181 (186)
Q Consensus 171 GVPiiyi~~~~ 181 (186)
.|||||.+++.
T Consensus 5 pvpiiycnrrt 15 (21)
T 8tfv_A 5 PVPIIYCNRRT 15 (26)
T ss_dssp CCCCEEEEGGG
T ss_pred cccEEEEcCcc
Confidence 59999998753
No 20
>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}
Probab=38.73 E-value=17 Score=25.83 Aligned_cols=28 Identities=7% Similarity=0.012 Sum_probs=21.0
Q ss_pred ecCHHHHHHHhh---cCCccEEEEeeccccC
Q 029889 157 TCDRDLKRRIRK---VRSTDLYLGTAFHDIG 184 (186)
Q Consensus 157 TnD~~LrrrlRk---ipGVPiiyi~~~~~~~ 184 (186)
+.|.+++..|.+ .+.||.||+.+.+-+|
T Consensus 54 ~~d~~~~~~l~~~~g~~tvP~ifi~g~~iGG 84 (111)
T 3zyw_A 54 FSDEEVRQGLKAYSSWPTYPQLYVSGELIGG 84 (111)
T ss_dssp GGCHHHHHHHHHHHTCCSSCEEEETTEEEEC
T ss_pred cCCHHHHHHHHHHHCCCCCCEEEECCEEEec
Confidence 457777777764 3679999999887554
No 21
>2wul_A Glutaredoxin related protein 5; chromosome 14 open reading frame 87, oxidoreductase, thiored family, GLRX5, FLB4739; HET: GSH; 2.40A {Homo sapiens}
Probab=38.71 E-value=13 Score=27.48 Aligned_cols=32 Identities=13% Similarity=-0.012 Sum_probs=25.6
Q ss_pred EEEEecCHHHHHHHhhc---CCccEEEEeeccccC
Q 029889 153 FIVATCDRDLKRRIRKV---RSTDLYLGTAFHDIG 184 (186)
Q Consensus 153 yiVATnD~~LrrrlRki---pGVPiiyi~~~~~~~ 184 (186)
++-...|.++|..|.+. |-||-|||.+.|-+|
T Consensus 55 ~~~v~~~~~~r~~l~~~sg~~TvPqIFI~g~~IGG 89 (118)
T 2wul_A 55 AYNVLDDPELRQGIKDYSNWPTIPQVYLNGEFVGG 89 (118)
T ss_dssp EEETTSCHHHHHHHHHHHTCCSSCEEEETTEEEEC
T ss_pred eecccCCHHHHHHHHHhccCCCCCeEeECCEEECC
Confidence 45557889999988876 459999999988765
No 22
>2wem_A Glutaredoxin-related protein 5; chromosome 14 open reading frame 87, Fe/S cluster, oxidoreductase, thioredoxin family, GLRX5, FLB4739, C14ORF87; HET: GTT; 2.40A {Homo sapiens} PDB: 2wul_A*
Probab=37.14 E-value=19 Score=26.08 Aligned_cols=31 Identities=13% Similarity=-0.004 Sum_probs=22.5
Q ss_pred EEEecCHHHHHHHhh---cCCccEEEEeeccccC
Q 029889 154 IVATCDRDLKRRIRK---VRSTDLYLGTAFHDIG 184 (186)
Q Consensus 154 iVATnD~~LrrrlRk---ipGVPiiyi~~~~~~~ 184 (186)
+=...|.+++..|++ .+.||.||+.+.+-+|
T Consensus 56 vdV~~d~~~~~~l~~~tg~~tvP~vfI~g~~IGG 89 (118)
T 2wem_A 56 YNVLDDPELRQGIKDYSNWPTIPQVYLNGEFVGG 89 (118)
T ss_dssp EESSSCHHHHHHHHHHHTCCSSCEEEETTEEEES
T ss_pred EEcCCCHHHHHHHHHHhCCCCcCeEEECCEEEeC
Confidence 333567788877764 4689999999887554
No 23
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=37.08 E-value=19 Score=25.26 Aligned_cols=28 Identities=7% Similarity=-0.102 Sum_probs=21.2
Q ss_pred ecCHHHHHHHhh---cCCccEEEEeeccccC
Q 029889 157 TCDRDLKRRIRK---VRSTDLYLGTAFHDIG 184 (186)
Q Consensus 157 TnD~~LrrrlRk---ipGVPiiyi~~~~~~~ 184 (186)
..|.+++..|.+ .+.||.+|+.+.+-+|
T Consensus 56 ~~~~~~~~~l~~~~g~~tvP~ifi~g~~iGG 86 (109)
T 3ipz_A 56 LENEMLRQGLKEYSNWPTFPQLYIGGEFFGG 86 (109)
T ss_dssp GGCHHHHHHHHHHHTCSSSCEEEETTEEEEC
T ss_pred CCCHHHHHHHHHHHCCCCCCeEEECCEEEeC
Confidence 467777777764 4689999999887554
No 24
>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}
Probab=36.32 E-value=24 Score=25.49 Aligned_cols=29 Identities=14% Similarity=0.031 Sum_probs=22.8
Q ss_pred EecCHHHHHHHhh---cCCccEEEEeeccccC
Q 029889 156 ATCDRDLKRRIRK---VRSTDLYLGTAFHDIG 184 (186)
Q Consensus 156 ATnD~~LrrrlRk---ipGVPiiyi~~~~~~~ 184 (186)
...|.+++..|.+ .+.||.|||.+.+-+|
T Consensus 56 v~~~~~~~~~l~~~sg~~tvP~vfI~g~~iGG 87 (121)
T 3gx8_A 56 VLEDPELREGIKEFSEWPTIPQLYVNKEFIGG 87 (121)
T ss_dssp CTTCHHHHHHHHHHHTCCSSCEEEETTEEEES
T ss_pred ecCCHHHHHHHHHHhCCCCCCeEEECCEEEec
Confidence 4578888888875 4789999999887655
No 25
>2ct6_A SH3 domain-binding glutamic acid-rich-like protein 2; SH3BGRL2,FASH3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=35.93 E-value=20 Score=25.31 Aligned_cols=31 Identities=6% Similarity=-0.111 Sum_probs=21.2
Q ss_pred EEEecCHHHHHHHhhc-----------CCccEEEEeeccccC
Q 029889 154 IVATCDRDLKRRIRKV-----------RSTDLYLGTAFHDIG 184 (186)
Q Consensus 154 iVATnD~~LrrrlRki-----------pGVPiiyi~~~~~~~ 184 (186)
+=.+.|.+++..+++. +.||+||+...+-+|
T Consensus 44 vdI~~~~~~~~~l~~~~~~~~~~~~g~~tvP~vfi~g~~iGG 85 (111)
T 2ct6_A 44 VDITMSEEQRQWMYKNVPPEKKPTQGNPLPPQIFNGDRYCGD 85 (111)
T ss_dssp EETTTCHHHHHHHHHSCCTTTCCSSSSCCSCEEEETTEEEEE
T ss_pred EECCCCHHHHHHHHHHhcccccccCCCCCCCEEEECCEEEeC
Confidence 3345677777777754 359999998776443
No 26
>2pz0_A Glycerophosphoryl diester phosphodiesterase; glycerophosphodiester phosphodiesterase, T. tengcongensis; 1.91A {Thermoanaerobacter tengcongensis}
Probab=34.92 E-value=86 Score=25.01 Aligned_cols=81 Identities=15% Similarity=0.222 Sum_probs=51.7
Q ss_pred eecHHHHHHHHHhc--------------hhhHHHHHhccCCCceeeecCCCC-----CChHHHHHHHhhcC---ceEEEE
Q 029889 99 CITDCVMAELEKLG--------------QKYRVALRIAKDPRFERLPCTHKG-----TYADDCLVERVTQH---KCFIVA 156 (186)
Q Consensus 99 ~iT~CVi~ELekLg--------------~k~r~Al~lak~~~~e~~kC~H~g-----~~addCI~~~v~~~---~~yiVA 156 (186)
.|.+..++||.+|. +.+...|++++++.+. +..+-+. ....+-+++++.+. ...+|.
T Consensus 72 ~v~~~t~~eL~~l~~~~~~~~~~~~~~iPtL~evL~~~~~~~~~-l~iEiK~~~~~~~~~~~~v~~~l~~~~~~~~vii~ 150 (252)
T 2pz0_A 72 FVKDFTLEEIKKLDAGIKFGEKFAGERIPTLYEVFELIGDKDFL-VNIEIKSGIVLYPGIEEKLIKAIKEYNFEERVIIS 150 (252)
T ss_dssp BGGGSCHHHHTTSCSSTTTCGGGTTCCCCBHHHHHHHHTTSCCE-EEEEECCSSCCCTTHHHHHHHHHHHTTCTTTEEEE
T ss_pred chhhCcHHHHhhcCCCCCCCCCCCCCcCCCHHHHHHHhhhcCCe-EEEEeCCCCcccHHHHHHHHHHHHhcCCCCCEEEE
Confidence 46677778887762 2356677777543221 1111111 12346677777653 457899
Q ss_pred ecCHHHHHHHhhc-CCccEEEEeec
Q 029889 157 TCDRDLKRRIRKV-RSTDLYLGTAF 180 (186)
Q Consensus 157 TnD~~LrrrlRki-pGVPiiyi~~~ 180 (186)
+-|.+.-+++|+. |++|+.++...
T Consensus 151 SF~~~~l~~~~~~~p~~~~~~l~~~ 175 (252)
T 2pz0_A 151 SFNHYSLRDVKKMAPHLKIGLLYQC 175 (252)
T ss_dssp ESBHHHHHHHHHHCTTSEEEEEECS
T ss_pred eCCHHHHHHHHHHCCCCCEEEEecC
Confidence 9999999999975 99999988653
No 27
>1t1v_A SH3BGRL3, SH3 domain-binding glutamic acid-rich protein-LIK; glutaredoxin, thioredoxin fold, protein 3D-structure, X-RAY crystallography; 1.60A {Mus musculus} SCOP: c.47.1.14 PDB: 1j0f_A 1sj6_A
Probab=34.61 E-value=19 Score=24.17 Aligned_cols=31 Identities=10% Similarity=0.088 Sum_probs=20.3
Q ss_pred EEEecCHHHHHHHhhc-----CCccEEEEeeccccC
Q 029889 154 IVATCDRDLKRRIRKV-----RSTDLYLGTAFHDIG 184 (186)
Q Consensus 154 iVATnD~~LrrrlRki-----pGVPiiyi~~~~~~~ 184 (186)
+=.+.|.+++..+++. ..||.+++.+.+-+|
T Consensus 38 ~di~~~~~~~~~l~~~~g~~~~~vP~ifi~g~~igG 73 (93)
T 1t1v_A 38 VDISQDNALRDEMRTLAGNPKATPPQIVNGNHYCGD 73 (93)
T ss_dssp EETTSCHHHHHHHHHHTTCTTCCSCEEEETTEEEEE
T ss_pred EECCCCHHHHHHHHHHhCCCCCCCCEEEECCEEEeC
Confidence 3335566777666643 269999998876554
No 28
>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}
Probab=34.51 E-value=25 Score=24.07 Aligned_cols=32 Identities=6% Similarity=-0.056 Sum_probs=22.0
Q ss_pred EEEEecCHHHHHHHh---hcCCccEEEEeeccccC
Q 029889 153 FIVATCDRDLKRRIR---KVRSTDLYLGTAFHDIG 184 (186)
Q Consensus 153 yiVATnD~~LrrrlR---kipGVPiiyi~~~~~~~ 184 (186)
++=.+.|.+++..+. ..++||.+++.+.+-+|
T Consensus 51 ~vdi~~~~~~~~~l~~~~g~~~vP~v~i~g~~igg 85 (105)
T 2yan_A 51 TFDILEDEEVRQGLKAYSNWPTYPQLYVKGELVGG 85 (105)
T ss_dssp EEEGGGCHHHHHHHHHHHTCCSSCEEEETTEEEEC
T ss_pred EEECCCCHHHHHHHHHHHCCCCCCeEEECCEEEeC
Confidence 444566777776654 35799999998776543
No 29
>2wci_A Glutaredoxin-4; redox-active center, iron-sulfur cluster scaffolder, Fe2S2, homodimer, transport, glutathione, thioredoxin fold; HET: GSH; 1.90A {Escherichia coli} PDB: 1yka_A
Probab=34.03 E-value=25 Score=26.17 Aligned_cols=32 Identities=9% Similarity=0.009 Sum_probs=22.5
Q ss_pred EEEEecCHHHHHHHhh---cCCccEEEEeeccccC
Q 029889 153 FIVATCDRDLKRRIRK---VRSTDLYLGTAFHDIG 184 (186)
Q Consensus 153 yiVATnD~~LrrrlRk---ipGVPiiyi~~~~~~~ 184 (186)
++=.+.|.+++..|++ .+.||+||+.+.+-+|
T Consensus 69 ~vdI~~d~~~~~~L~~~~G~~tvP~VfI~G~~iGG 103 (135)
T 2wci_A 69 YVDILQNPDIRAELPKYANWPTFPQLWVDGELVGG 103 (135)
T ss_dssp EEEGGGCHHHHHHHHHHHTCCSSCEEEETTEEEES
T ss_pred EEECCCCHHHHHHHHHHHCCCCcCEEEECCEEEEC
Confidence 3444567777777765 4789999998876544
No 30
>3v32_B Ribonuclease ZC3H12A; rossmann-like sandwich fold, RNAse, cytoplastic, hydrolase; 2.00A {Homo sapiens} PDB: 3v34_A
Probab=32.79 E-value=55 Score=26.09 Aligned_cols=22 Identities=27% Similarity=0.394 Sum_probs=18.3
Q ss_pred CChHHHHHHHhhcCceEEEEecC
Q 029889 137 TYADDCLVERVTQHKCFIVATCD 159 (186)
Q Consensus 137 ~~addCI~~~v~~~~~yiVATnD 159 (186)
.|+|.=|+++|.+.+. +|.|||
T Consensus 112 ~ydD~~il~~A~~~~g-~IVSND 133 (185)
T 3v32_B 112 CYDDRFIVKLAYESDG-IVVSND 133 (185)
T ss_dssp CCHHHHHHHHHHHTTC-EEECSC
T ss_pred CccHHHHHHHHHHcCC-EEEeCc
Confidence 3778889999999885 777899
No 31
>2dk4_A PRE-mRNA-splicing factor 18; SFM domain, HPRP18, structural NPPSFA, national project on protein structural and function analyses; NMR {Homo sapiens} SCOP: a.140.6.1
Probab=32.66 E-value=8.3 Score=26.92 Aligned_cols=25 Identities=16% Similarity=0.247 Sum_probs=21.5
Q ss_pred EEEEecCHHHHHHHhhcCCccEEEEe
Q 029889 153 FIVATCDRDLKRRIRKVRSTDLYLGT 178 (186)
Q Consensus 153 yiVATnD~~LrrrlRkipGVPiiyi~ 178 (186)
.-|-|.|.+++++||.. |=||.++.
T Consensus 23 ~~v~~~d~eV~~~LR~l-gEPi~LFG 47 (76)
T 2dk4_A 23 LPMTLSRQEVIRRLRER-GEPIRLFG 47 (76)
T ss_dssp SSCCSCHHHHHHHHHHH-TCCSSCTT
T ss_pred CCCCCCHHHHHHHHHHc-CCCeeecC
Confidence 45789999999999999 99987653
No 32
>1vd6_A Glycerophosphoryl diester phosphodiesterase; glycerophosphod phosphodiesterase, HB8; 1.30A {Thermus thermophilus} SCOP: c.1.18.3 PDB: 1v8e_A
Probab=29.63 E-value=2e+02 Score=22.35 Aligned_cols=80 Identities=16% Similarity=0.068 Sum_probs=53.3
Q ss_pred eecHHHHHHHHHhc---hhhHHHHHhcc-CCCceeeecCCCCCC-----hHHHHHHHhhcCceEEEEecCHHHHHHHhh-
Q 029889 99 CITDCVMAELEKLG---QKYRVALRIAK-DPRFERLPCTHKGTY-----ADDCLVERVTQHKCFIVATCDRDLKRRIRK- 168 (186)
Q Consensus 99 ~iT~CVi~ELekLg---~k~r~Al~lak-~~~~e~~kC~H~g~~-----addCI~~~v~~~~~yiVATnD~~LrrrlRk- 168 (186)
.|.+..++||.+|. +.+...|+.++ +..+. +..+-+... .-+-+++.+.+....+|.+-|.+.-+++++
T Consensus 63 ~v~~~t~~eL~~l~~~iptL~evl~~~~~~~~~~-l~iEiK~~~~~~~~~~~~v~~~l~~~~~v~i~Sf~~~~l~~~~~~ 141 (224)
T 1vd6_A 63 PVFQVDYADLKAQEPDLPRLEEVLALKEAFPQAV-FNVELKSFPGLGEEAARRLAALLRGREGVWVSSFDPLALLALRKA 141 (224)
T ss_dssp EGGGSCHHHHHHHSTTCCBHHHHHGGGGTCTTCE-EEEEECCCTTSHHHHHHHHHHHTTTCSSEEEEESCHHHHHHHHHH
T ss_pred ChhhCCHHHHHhcCCCCCCHHHHHHhhhccCCce-EEEEECCCCCccHHHHHHHHHHHhcCCcEEEEeCCHHHHHHHHHH
Confidence 37778889998884 34777888776 32221 122222221 234566666655557999999999999987
Q ss_pred cCCccEEEEee
Q 029889 169 VRSTDLYLGTA 179 (186)
Q Consensus 169 ipGVPiiyi~~ 179 (186)
.|++|+.++..
T Consensus 142 ~p~~~~~~l~~ 152 (224)
T 1vd6_A 142 APGLPLGFLMA 152 (224)
T ss_dssp CTTSCEEEEES
T ss_pred CCCCCEEEEec
Confidence 69999988764
No 33
>3qmx_A Glutaredoxin A, glutaredoxin 3; electron transport; 1.82A {Synechocystis SP} SCOP: c.47.1.0
Probab=28.08 E-value=74 Score=21.74 Aligned_cols=32 Identities=16% Similarity=0.025 Sum_probs=22.3
Q ss_pred EEEEecCHHHHHHHh----hcCCccEEEEeeccccC
Q 029889 153 FIVATCDRDLKRRIR----KVRSTDLYLGTAFHDIG 184 (186)
Q Consensus 153 yiVATnD~~LrrrlR----kipGVPiiyi~~~~~~~ 184 (186)
++=.+.|.+++..+. ..++||++++.+..-+|
T Consensus 45 ~idI~~~~~~~~~l~~~~~g~~~vP~ifi~g~~igG 80 (99)
T 3qmx_A 45 EYCIDGDNEAREAMAARANGKRSLPQIFIDDQHIGG 80 (99)
T ss_dssp EEECTTCHHHHHHHHHHTTTCCCSCEEEETTEEEES
T ss_pred EEEcCCCHHHHHHHHHHhCCCCCCCEEEECCEEEeC
Confidence 455567777777775 44689999998765443
No 34
>1o1z_A GDPD, glycerophosphodiester phosphodiesterase; TM1621, glycerophosphodiester phosphodiesterase (GDPD), STRU genomics, JCSG, PSI; 1.60A {Thermotoga maritima} SCOP: c.1.18.3
Probab=25.69 E-value=1.7e+02 Score=23.06 Aligned_cols=78 Identities=21% Similarity=0.194 Sum_probs=52.6
Q ss_pred eeecHHHHHHHHHhc----hhhHHHHHhccCCCceeeecCCCCCChHHHHHHHhhcCceEEEEecCHHHHHHHh-hcCCc
Q 029889 98 PCITDCVMAELEKLG----QKYRVALRIAKDPRFERLPCTHKGTYADDCLVERVTQHKCFIVATCDRDLKRRIR-KVRST 172 (186)
Q Consensus 98 ~~iT~CVi~ELekLg----~k~r~Al~lak~~~~e~~kC~H~g~~addCI~~~v~~~~~yiVATnD~~LrrrlR-kipGV 172 (186)
-.|.+..++||.+|. +.+...|+.+++ +. .+..+-+.....+-+++++.+.+..++.+-| | ++++ ..|++
T Consensus 72 g~v~d~T~~eL~~l~~~~iptL~evL~~~~~-~~-~l~iEiK~~~~~~~v~~~l~~~~~vii~Sf~--l-~~~~~~~p~~ 146 (234)
T 1o1z_A 72 VKIRDATVSELKELTDGKITTLKEVFENVSD-DK-IINIEIKEREAADAVLEISKKRKNLIFSSFD--L-DLLDEKFKGT 146 (234)
T ss_dssp EEGGGSCHHHHHHHTTTCCCBHHHHHHHSCT-TS-EEEEEECCGGGHHHHHHHHTTCCSEEEEESC--H-HHHHHHCTTS
T ss_pred cCcccCcHHHHhcCCCCCCCCHHHHHHhccc-CC-eEEEEeCCccHHHHHHHHHhccCCEEEEchh--H-HHHHhhCCCC
Confidence 467888899999983 347788888775 21 1223333333456677777665568889999 4 5555 46999
Q ss_pred cEEEEeec
Q 029889 173 DLYLGTAF 180 (186)
Q Consensus 173 Piiyi~~~ 180 (186)
|+.++...
T Consensus 147 ~~~~l~~~ 154 (234)
T 1o1z_A 147 KYGYLIDE 154 (234)
T ss_dssp CEEEECCT
T ss_pred cEEEEecc
Confidence 99988654
No 35
>2ns5_A Partitioning-defective 3 homolog; cell polarity, N-terminal domain, PB1 domain, asymmetric membrane localization, signaling protein; NMR {Rattus norvegicus}
Probab=24.38 E-value=34 Score=24.20 Aligned_cols=45 Identities=22% Similarity=0.248 Sum_probs=28.7
Q ss_pred hhHHHHHhccCCCceee--ecCCCCC-ChHHHHHHHhhcCceEEEEecC
Q 029889 114 KYRVALRIAKDPRFERL--PCTHKGT-YADDCLVERVTQHKCFIVATCD 159 (186)
Q Consensus 114 k~r~Al~lak~~~~e~~--kC~H~g~-~addCI~~~v~~~~~yiVATnD 159 (186)
+|+.+...-.+..++.+ .|.-.|. .+||+|.+++..+. +|+|.-|
T Consensus 35 RY~K~~~k~~~~~v~V~~l~~~~ggiLD~DD~l~dVldD~e-~i~A~~~ 82 (85)
T 2ns5_A 35 RYRKAVAKDPNYWIQVHRLEHGDGGILDLDDILCDVADDKD-RLVAVFD 82 (85)
T ss_dssp HHHHHTTCCTTSCEEEEEEECSSSCEECTTSCHHHHSCTTE-EEEEEEE
T ss_pred HHHHhcCCCCCcEEEEEEEEeCCCcEeCcccchhhhccCcc-eEEEEec
Confidence 45555543233345555 6743333 89999999998776 7888654
No 36
>3rhb_A ATGRXC5, glutaredoxin-C5, chloroplastic; thioredoxin fold, thiol-disulfide oxidoreductase, glutaredox oxidoreductase; HET: GSH; 1.20A {Arabidopsis thaliana} PDB: 3rhc_A* 3fz9_A* 3fza_A*
Probab=22.44 E-value=35 Score=23.48 Aligned_cols=25 Identities=12% Similarity=0.104 Sum_probs=16.8
Q ss_pred HHHHHHHhh---cCCccEEEEeeccccC
Q 029889 160 RDLKRRIRK---VRSTDLYLGTAFHDIG 184 (186)
Q Consensus 160 ~~LrrrlRk---ipGVPiiyi~~~~~~~ 184 (186)
.+++..+.+ .+.||.+|+.+.+-+|
T Consensus 59 ~~~~~~l~~~~g~~tvP~ifi~g~~igG 86 (113)
T 3rhb_A 59 PQLQKVLERLTGQHTVPNVFVCGKHIGG 86 (113)
T ss_dssp HHHHHHHHHHHSCCSSCEEEETTEEEES
T ss_pred HHHHHHHHHHhCCCCcCEEEECCEEEcC
Confidence 455555543 4689999998876554
No 37
>1u6t_A SH3 domain-binding glutamic acid-rich-like protein; SH3-binding, glutaredoxin, thioredoxin fold, crystallography, protein binding; HET: CIT; 1.90A {Homo sapiens} PDB: 1wry_A
Probab=21.47 E-value=49 Score=24.47 Aligned_cols=32 Identities=3% Similarity=-0.084 Sum_probs=23.6
Q ss_pred EEEEecCHHHHHHHhhc-----------CCccEEEEeeccccC
Q 029889 153 FIVATCDRDLKRRIRKV-----------RSTDLYLGTAFHDIG 184 (186)
Q Consensus 153 yiVATnD~~LrrrlRki-----------pGVPiiyi~~~~~~~ 184 (186)
.+=.+.|.+.|..+++. +.||.||+...+-+|
T Consensus 35 EidI~~d~~~r~eM~~~~~~~~~~~~G~~tvPQIFi~~~~iGG 77 (121)
T 1u6t_A 35 EKDIAANEENRKWMRENVPENSRPATGYPLPPQIFNESQYRGD 77 (121)
T ss_dssp EEECTTCHHHHHHHHHHSCGGGSCSSSSCCSCEEEETTEEEEE
T ss_pred EEECCCCHHHHHHHHHhccccccccCCCcCCCEEEECCEEEec
Confidence 35556788888877733 479999999887654
No 38
>1ul1_X Flap endonuclease-1; protein complex, DNA-binding protein, flap DNA, flap endonuclease, sliding clamp, DNA clamp; 2.90A {Homo sapiens} SCOP: a.60.7.1 c.120.1.2
Probab=21.00 E-value=46 Score=28.87 Aligned_cols=28 Identities=25% Similarity=0.129 Sum_probs=24.4
Q ss_pred ChHHHHHHHhhcCceEEEEecCHHHHHH
Q 029889 138 YADDCLVERVTQHKCFIVATCDRDLKRR 165 (186)
Q Consensus 138 ~addCI~~~v~~~~~yiVATnD~~Lrrr 165 (186)
-||+.|..++.....+.|+|+|.||-.-
T Consensus 157 EADd~iA~La~~g~~~~iiS~D~Dll~~ 184 (379)
T 1ul1_X 157 EAEASCAALVKAGKVYAAATEDMDCLTF 184 (379)
T ss_dssp CHHHHHHHHHHHTSSSEEECSCTHHHHT
T ss_pred cHHHHHHHHHhcCCeEEEEecCcCcccc
Confidence 7999999999887778899999998754
No 39
>4fcu_A 3-deoxy-manno-octulosonate cytidylyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.90A {Acinetobacter baumannii} PDB: 3pol_A
Probab=20.22 E-value=79 Score=25.55 Aligned_cols=32 Identities=28% Similarity=0.225 Sum_probs=24.3
Q ss_pred ceEEEEecCHHHHHHHhhcCCccEEEEeecccc
Q 029889 151 KCFIVATCDRDLKRRIRKVRSTDLYLGTAFHDI 183 (186)
Q Consensus 151 ~~yiVATnD~~LrrrlRkipGVPiiyi~~~~~~ 183 (186)
...+|+|+|.++..-+.+. |+++++.+..+.+
T Consensus 43 ~~vvVvt~~~~i~~~~~~~-g~~v~~~~~~~~~ 74 (253)
T 4fcu_A 43 DDLCVATDDERIAEICRAE-GVDVVLTSADHPS 74 (253)
T ss_dssp CEEEEEESCHHHHHHHHTT-TCCEEECCTTCCC
T ss_pred CEEEEECCHHHHHHHHHHc-CCeEEEeCCCCCC
Confidence 3479999998888888776 9999876554443
Done!