BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029890
(186 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WKQ|A Chain A, Crystal Structure Of Bacillus Subtilis Guanine Deaminase.
The First Domain-Swapped Structure In The Cytidine
Deaminase Superfamily
pdb|1WKQ|B Chain B, Crystal Structure Of Bacillus Subtilis Guanine Deaminase.
The First Domain-Swapped Structure In The Cytidine
Deaminase Superfamily
Length = 164
Score = 117 bits (293), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 55/98 (56%), Positives = 68/98 (69%)
Query: 34 FLTRAVEEAYKGVECGDGGPFGAVVVRNDEVVVSCHNMVLKSTDPTAHAEVTAIREACKK 93
FL RAV A +GV G GGPFGAV+V++ ++ N V S DPTAHAEVTAIR+ACK
Sbjct: 14 FLKRAVTLACEGVNAGIGGPFGAVIVKDGAIIAEGQNNVTTSNDPTAHAEVTAIRKACKV 73
Query: 94 LNQIELSDCEIYASCEPCPMCFGAIHLSRIKRLVYGAK 131
L +L DC +Y SCEPCPMC GAI+ +R K + Y A+
Sbjct: 74 LGAYQLDDCILYTSCEPCPMCLGAIYWARPKAVFYAAE 111
>pdb|1TIY|A Chain A, X-Ray Structure Of Guanine Deaminase From Bacillus
Subtilis Northeast Structural Genomics Consortium Target
Sr160
pdb|1TIY|B Chain B, X-Ray Structure Of Guanine Deaminase From Bacillus
Subtilis Northeast Structural Genomics Consortium Target
Sr160
Length = 164
Score = 114 bits (286), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 54/98 (55%), Positives = 67/98 (68%)
Query: 34 FLTRAVEEAYKGVECGDGGPFGAVVVRNDEVVVSCHNMVLKSTDPTAHAEVTAIREACKK 93
FL RAV A +GV G GGPFGAV+V++ ++ N V S DPTAHAEVTAIR+ACK
Sbjct: 6 FLKRAVTLACEGVNAGIGGPFGAVIVKDGAIIAEGQNNVTTSNDPTAHAEVTAIRKACKV 65
Query: 94 LNQIELSDCEIYASCEPCPMCFGAIHLSRIKRLVYGAK 131
L +L DC +Y SCEPCP C GAI+ +R K + Y A+
Sbjct: 66 LGAYQLDDCILYTSCEPCPXCLGAIYWARPKAVFYAAE 103
>pdb|2B3J|A Chain A, Crystal Structure Of Staphylococcus Aureus Trna Adenosine
Deaminase, Tada, In Complex With Rna
pdb|2B3J|B Chain B, Crystal Structure Of Staphylococcus Aureus Trna Adenosine
Deaminase, Tada, In Complex With Rna
pdb|2B3J|C Chain C, Crystal Structure Of Staphylococcus Aureus Trna Adenosine
Deaminase, Tada, In Complex With Rna
pdb|2B3J|D Chain D, Crystal Structure Of Staphylococcus Aureus Trna Adenosine
Deaminase, Tada, In Complex With Rna
Length = 159
Score = 91.7 bits (226), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 46/100 (46%), Positives = 60/100 (60%), Gaps = 1/100 (1%)
Query: 31 DHKFLTRAVEEAYKGVECGDGGPFGAVVVRNDEVVVSCHNMVLKSTDPTAHAEVTAIREA 90
D F+T A+EEA K + G+ P GA++ ++DEV+ HN+ PTAHAE AI A
Sbjct: 7 DIYFMTLAIEEAKKAAQLGEV-PIGAIITKDDEVIARAHNLRETLQQPTAHAEHIAIERA 65
Query: 91 CKKLNQIELSDCEIYASCEPCPMCFGAIHLSRIKRLVYGA 130
K L L C +Y + EPC MC G I +SRI R+VYGA
Sbjct: 66 AKVLGSWRLEGCTLYVTLEPCVMCAGTIVMSRIPRVVYGA 105
>pdb|1WWR|A Chain A, Crystal Structure Of Trna Adenosine Deaminase Tada From
Aquifex Aeolicus
pdb|1WWR|B Chain B, Crystal Structure Of Trna Adenosine Deaminase Tada From
Aquifex Aeolicus
pdb|1WWR|C Chain C, Crystal Structure Of Trna Adenosine Deaminase Tada From
Aquifex Aeolicus
pdb|1WWR|D Chain D, Crystal Structure Of Trna Adenosine Deaminase Tada From
Aquifex Aeolicus
Length = 171
Score = 91.7 bits (226), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 44/97 (45%), Positives = 65/97 (67%), Gaps = 1/97 (1%)
Query: 34 FLTRAVEEAYKGVECGDGGPFGAVVVRNDEVVVSCHNMVLKSTDPTAHAEVTAIREACKK 93
FL A+ EA + E G+ P GA++V+ E++ HN V + DPTAHAE+ AI+EAC++
Sbjct: 26 FLKVALREAKRAFEKGEV-PVGAIIVKEGEIISKAHNSVEELKDPTAHAEMLAIKEACRR 84
Query: 94 LNQIELSDCEIYASCEPCPMCFGAIHLSRIKRLVYGA 130
LN L CE+Y + EPC MC A+ LSRI+++++ A
Sbjct: 85 LNTKYLEGCELYVTLEPCIMCSYALVLSRIEKVIFSA 121
>pdb|2A8N|A Chain A, Biochemical And Structural Studies Of A-To-I Editing By
Trna:a34 Deaminases At The Wobble Position Of Transfer
Rna
pdb|2A8N|B Chain B, Biochemical And Structural Studies Of A-To-I Editing By
Trna:a34 Deaminases At The Wobble Position Of Transfer
Rna
Length = 144
Score = 76.3 bits (186), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/105 (40%), Positives = 59/105 (56%), Gaps = 2/105 (1%)
Query: 27 VKDRDHKFLTRAVEEAYKGVECGDGGPFGAVVVRNDEVVVSCHNMVLKSTDPTAHAEVTA 86
+ +R H F+ A+ EA E D P GAV+V + V+ N + D TAHAE+
Sbjct: 1 MAERTH-FMELALVEARSAGE-RDEVPIGAVLVLDGRVIARSGNRTRELNDVTAHAEIAV 58
Query: 87 IREACKKLNQIELSDCEIYASCEPCPMCFGAIHLSRIKRLVYGAK 131
IR AC+ L Q L ++Y + EPC MC AI +RI+RL YGA+
Sbjct: 59 IRMACEALGQERLPGADLYVTLEPCTMCAAAISFARIRRLYYGAQ 103
>pdb|3OCQ|A Chain A, Crystal Structure Of Trna-Specific Adenosine Deaminase
From Salmonella Enterica
Length = 183
Score = 73.6 bits (179), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 60/118 (50%), Gaps = 2/118 (1%)
Query: 16 VAPAFPGHQEAVKD--RDHKFLTRAVEEAYKGVECGDGGPFGAVVVRNDEVVVSCHNMVL 73
+ PAF ++ D DH++ R K P GAV+V N V+ N +
Sbjct: 1 MPPAFITGVTSLSDVELDHEYWMRHALTLAKRAWDEREVPVGAVLVHNHRVIGEGWNRPI 60
Query: 74 KSTDPTAHAEVTAIREACKKLNQIELSDCEIYASCEPCPMCFGAIHLSRIKRLVYGAK 131
DPTAHAE+ A+R+ L L D +Y + EPC MC GA+ SRI R+V+GA+
Sbjct: 61 GRHDPTAHAEIMALRQGGLVLQNYRLLDTTLYVTLEPCVMCAGAMVHSRIGRVVFGAR 118
>pdb|1Z3A|A Chain A, Crystal Structure Of Trna Adenosine Deaminase Tada From
Escherichia Coli
pdb|1Z3A|B Chain B, Crystal Structure Of Trna Adenosine Deaminase Tada From
Escherichia Coli
Length = 168
Score = 73.6 bits (179), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 48/79 (60%)
Query: 53 PFGAVVVRNDEVVVSCHNMVLKSTDPTAHAEVTAIREACKKLNQIELSDCEIYASCEPCP 112
P GAV+V N+ V+ N + DPTAHAE+ A+R+ + L D +Y + EPC
Sbjct: 30 PVGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQGGLVMQNYRLIDATLYVTLEPCV 89
Query: 113 MCFGAIHLSRIKRLVYGAK 131
MC GA+ SRI R+V+GA+
Sbjct: 90 MCAGAMIHSRIGRVVFGAR 108
>pdb|2NX8|A Chain A, The Crystal Structure Of The Trna-Specific Adenosine
Deaminase From Streptococcus Pyogenes
Length = 179
Score = 67.4 bits (163), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 55/97 (56%), Gaps = 1/97 (1%)
Query: 34 FLTRAVEEAYKGVECGDGGPFGAVVVRNDEVVVSCHNMVLKSTDPTAHAEVTAIREACKK 93
F+ A++E+ K ++ + P G V+V++ E++ HN +S HAE+ AI EA
Sbjct: 19 FMQEALKESEKSLQKAEI-PIGCVIVKDGEIIGRGHNAREESNQAIMHAEMMAINEANAH 77
Query: 94 LNQIELSDCEIYASCEPCPMCFGAIHLSRIKRLVYGA 130
L D ++ + EPC MC GAI L+RI ++YGA
Sbjct: 78 EGNWRLLDTTLFVTIEPCVMCSGAIGLARIPHVIYGA 114
>pdb|2G84|A Chain A, Cytidine And Deoxycytidylate Deaminase Zinc-Binding Region
From Nitrosomonas Europaea.
pdb|2G84|B Chain B, Cytidine And Deoxycytidylate Deaminase Zinc-Binding Region
From Nitrosomonas Europaea
Length = 197
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 48/89 (53%), Gaps = 7/89 (7%)
Query: 50 DGGPFGAVVVRNDE--VVVSCHNMVLKSTDPTAHAEVTAIREACKKLNQIELSD-----C 102
DGGPF A V D ++ + N V+ AHAE+ A+ A KL+ +LS C
Sbjct: 46 DGGPFAAAVFERDSGLLIAAGTNRVVPGRCSAAHAEILALSLAQAKLDTHDLSADGLPAC 105
Query: 103 EIYASCEPCPMCFGAIHLSRIKRLVYGAK 131
E+ S EPC MCFGA+ S ++ LV A+
Sbjct: 106 ELVTSAEPCVMCFGAVIWSGVRSLVCAAR 134
>pdb|2O3K|A Chain A, Yeast Cytosine Deaminase D92e Triple Mutant Bound To
Transition State Analogue Hpy
pdb|2O3K|B Chain B, Yeast Cytosine Deaminase D92e Triple Mutant Bound To
Transition State Analogue Hpy
Length = 161
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 49/101 (48%), Gaps = 4/101 (3%)
Query: 31 DHKFLTRAVEEAYKGVECGDGGPFGAVVVRNDE--VVVSCHNMVLKSTDPTAHAEVTAIR 88
D K + A EEA G + G G P G ++ N + V+ HNM + T H E++ +
Sbjct: 14 DQKGMDIAYEEALLGYKEG-GVPIGGCLINNKDGSVLGRGHNMRFQKGSATLHGEISTL- 71
Query: 89 EACKKLNQIELSDCEIYASCEPCPMCFGAIHLSRIKRLVYG 129
E C +L D +Y + PC MC GAI + I R V G
Sbjct: 72 ENCGRLEGKVYKDTTLYTTLSPCEMCTGAIIMYGIPRCVIG 112
>pdb|1YSB|A Chain A, Yeast Cytosine Deaminase Triple Mutant
pdb|1YSB|B Chain B, Yeast Cytosine Deaminase Triple Mutant
Length = 161
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 49/101 (48%), Gaps = 4/101 (3%)
Query: 31 DHKFLTRAVEEAYKGVECGDGGPFGAVVVRNDE--VVVSCHNMVLKSTDPTAHAEVTAIR 88
D K + A EEA G + G G P G ++ N + V+ HNM + T H E++ +
Sbjct: 14 DQKGMDIAYEEALLGYKEG-GVPIGGCLINNKDGSVLGRGHNMRFQKGSATLHGEISTL- 71
Query: 89 EACKKLNQIELSDCEIYASCEPCPMCFGAIHLSRIKRLVYG 129
E C +L D +Y + PC MC GAI + I R V G
Sbjct: 72 ENCGRLEGKVYKDTTLYTTLSPCDMCTGAIIMYGIPRCVIG 112
>pdb|1YSD|A Chain A, Yeast Cytosine Deaminase Double Mutant
pdb|1YSD|B Chain B, Yeast Cytosine Deaminase Double Mutant
Length = 161
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 49/101 (48%), Gaps = 4/101 (3%)
Query: 31 DHKFLTRAVEEAYKGVECGDGGPFGAVVVRNDE--VVVSCHNMVLKSTDPTAHAEVTAIR 88
D K + A EEA G + G G P G ++ N + V+ HNM + T H E++ +
Sbjct: 14 DQKGMDIAYEEALLGYKEG-GVPIGGCLINNKDGSVLGRGHNMRFQKGSATLHGEISTL- 71
Query: 89 EACKKLNQIELSDCEIYASCEPCPMCFGAIHLSRIKRLVYG 129
E C +L D +Y + PC MC GAI + I R V G
Sbjct: 72 ENCGRLEGKVYKDTTLYTTLSPCDMCTGAIIMYGIPRCVVG 112
>pdb|1P6O|A Chain A, The Crystal Structure Of Yeast Cytosine Deaminase Bound To
4(R)-Hydroxyl-3,4-Dihydropyrimidine At 1.14 Angstroms.
pdb|1P6O|B Chain B, The Crystal Structure Of Yeast Cytosine Deaminase Bound To
4(R)-Hydroxyl-3,4-Dihydropyrimidine At 1.14 Angstroms.
pdb|1RB7|A Chain A, Yeast Cytosine Deaminase Crystal Form P212121 With Sodium
Acetate.
pdb|1RB7|B Chain B, Yeast Cytosine Deaminase Crystal Form P212121 With Sodium
Acetate
Length = 161
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 49/101 (48%), Gaps = 4/101 (3%)
Query: 31 DHKFLTRAVEEAYKGVECGDGGPFGAVVVRNDE--VVVSCHNMVLKSTDPTAHAEVTAIR 88
D K + A EEA G + G G P G ++ N + V+ HNM + T H E++ +
Sbjct: 14 DQKGMDIAYEEAALGYKEG-GVPIGGCLINNKDGSVLGRGHNMRFQKGSATLHGEISTL- 71
Query: 89 EACKKLNQIELSDCEIYASCEPCPMCFGAIHLSRIKRLVYG 129
E C +L D +Y + PC MC GAI + I R V G
Sbjct: 72 ENCGRLEGKVYKDTTLYTTLSPCDMCTGAIIMYGIPRCVVG 112
>pdb|1UAQ|A Chain A, The Crystal Structure Of Yeast Cytosine Deaminase
pdb|1UAQ|B Chain B, The Crystal Structure Of Yeast Cytosine Deaminase
Length = 158
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 49/101 (48%), Gaps = 4/101 (3%)
Query: 31 DHKFLTRAVEEAYKGVECGDGGPFGAVVVRNDE--VVVSCHNMVLKSTDPTAHAEVTAIR 88
D K + A EEA G + G G P G ++ N + V+ HNM + T H E++ +
Sbjct: 11 DQKGMDIAYEEAALGYKEG-GVPIGGCLINNKDGSVLGRGHNMRFQKGSATLHGEISTL- 68
Query: 89 EACKKLNQIELSDCEIYASCEPCPMCFGAIHLSRIKRLVYG 129
E C +L D +Y + PC MC GAI + I R V G
Sbjct: 69 ENCGRLEGKVYKDTTLYTTLSPCDMCTGAIIMYGIPRCVVG 109
>pdb|3DH1|A Chain A, Crystal Structure Of Human Trna-Specific Adenosine-34
Deaminase Subunit Adat2
pdb|3DH1|B Chain B, Crystal Structure Of Human Trna-Specific Adenosine-34
Deaminase Subunit Adat2
pdb|3DH1|C Chain C, Crystal Structure Of Human Trna-Specific Adenosine-34
Deaminase Subunit Adat2
pdb|3DH1|D Chain D, Crystal Structure Of Human Trna-Specific Adenosine-34
Deaminase Subunit Adat2
Length = 189
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 55/109 (50%), Gaps = 7/109 (6%)
Query: 29 DRDHKFLTRAVEEAYKGVECGDGGPFGAVVVRNDEVVVSCHNMVLKSTDPTAHAEVTAIR 88
+ K++ A+ A + +E + P G ++V N+EVV N V ++ + T HAE+ AI
Sbjct: 24 EETEKWMEEAMHMAKEALENTEV-PVGCLMVYNNEVVGKGRNEVNQTKNATRHAEMVAID 82
Query: 89 EACKKLNQIELSDCEI------YASCEPCPMCFGAIHLSRIKRLVYGAK 131
+ Q S E+ Y + EPC MC A+ L +I +VYG +
Sbjct: 83 QVLDWCRQSGKSPSEVFEHTVLYVTVEPCIMCAAALRLMKIPLVVYGCQ 131
>pdb|1OX7|A Chain A, Crystal Structure Of Yeast Cytosine Deaminase Apo-Enzyme:
Inorganic Zinc Bound
pdb|1OX7|B Chain B, Crystal Structure Of Yeast Cytosine Deaminase Apo-Enzyme:
Inorganic Zinc Bound
Length = 161
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 45/101 (44%), Gaps = 4/101 (3%)
Query: 31 DHKFLTRAVEEAYKGVECGDGGPFGAVVVRNDE--VVVSCHNMVLKSTDPTAHAEVTAIR 88
D K A EEA G + G G P G ++ N + V+ HN + T H E++ +
Sbjct: 14 DQKGXDIAYEEAALGYKEG-GVPIGGCLINNKDGSVLGRGHNXRFQKGSATLHGEISTL- 71
Query: 89 EACKKLNQIELSDCEIYASCEPCPMCFGAIHLSRIKRLVYG 129
E C +L D +Y + PC C GAI I R V G
Sbjct: 72 ENCGRLEGKVYKDTTLYTTLSPCDXCTGAIIXYGIPRCVVG 112
>pdb|2HVV|A Chain A, Crystal Structure Of Dcmp Deaminase From Streptococcus
Mutans
pdb|2HVV|B Chain B, Crystal Structure Of Dcmp Deaminase From Streptococcus
Mutans
pdb|2HVW|A Chain A, Crystal Structure Of Dcmp Deaminase From Streptococcus
Mutans
pdb|2HVW|B Chain B, Crystal Structure Of Dcmp Deaminase From Streptococcus
Mutans
pdb|2HVW|C Chain C, Crystal Structure Of Dcmp Deaminase From Streptococcus
Mutans
Length = 184
Score = 37.0 bits (84), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 44/89 (49%), Gaps = 17/89 (19%)
Query: 55 GAVVVRNDEVVVSCHNMVLKSTDP---------------TAHAEVTAIREACKKLNQIEL 99
GAV+V+N+ ++ + +N + TD T HAE+ A+ + K+ I
Sbjct: 64 GAVLVKNNRIIATGYNGGVADTDNCDDVGHEMEDGHCIRTVHAEMNALIQCAKE--GISA 121
Query: 100 SDCEIYASCEPCPMCFGAIHLSRIKRLVY 128
++ EIY + PC C A+ + +K++ Y
Sbjct: 122 NNTEIYVTHFPCINCTKALLQAGVKKITY 150
>pdb|1VQ2|A Chain A, Crystal Structure Of T4-Bacteriophage Deoxycytidylate
Deaminase, Mutant R115e
Length = 193
Score = 35.4 bits (80), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 75 STDPTAHAEVTAIREACKKLNQIELSDCEIYASCEPCPMCFGAIHLSRIKRLVY 128
S+ HAE+ AI A + + IE +Y + PCP C AI S IK+LVY
Sbjct: 98 SSKNEIHAELNAILFAAENGSSIE--GATMYVTLSPCPDCAKAIAQSGIKKLVY 149
>pdb|2O7P|A Chain A, The Crystal Structure Of Ribd From Escherichia Coli In
Complex With The Oxidised Nadp+ Cofactor In The Active
Site Of The Reductase Domain
pdb|2O7P|B Chain B, The Crystal Structure Of Ribd From Escherichia Coli In
Complex With The Oxidised Nadp+ Cofactor In The Active
Site Of The Reductase Domain
Length = 380
Score = 33.1 bits (74), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 67/156 (42%), Gaps = 27/156 (17%)
Query: 27 VKDRDHKFLTRAVEEAYKGVECGDGGP-FGAVVVRNDEVVVSCHNMVLKSTDPTAHAEVT 85
++ +D + RA++ A +G P G V+V++ E+V ++ ++ +P HAEV
Sbjct: 4 IQGQDEYYXARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQ--RAGEP--HAEVH 59
Query: 86 AIREACKKLNQIELSDCEIYASCEPC------PMCFGAIHLSRIKRLVYGAKXXXXXXXX 139
A+R A +K Y + EPC P C A+ + + R+V +
Sbjct: 60 ALRXAGEKAK-----GATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASXQ-------- 106
Query: 140 XXXXXXXXLRGTGFYQKAQLEIKKADGTGAAIAEQV 175
+ G G Y+ Q I + G + AEQ+
Sbjct: 107 ---DPNPQVAGRGLYRLQQAGIDVSHGLXXSEAEQL 139
>pdb|2G6V|A Chain A, The Crystal Structure Of Ribd From Escherichia Coli
pdb|2G6V|B Chain B, The Crystal Structure Of Ribd From Escherichia Coli
pdb|2OBC|A Chain A, The Crystal Structure Of Ribd From Escherichia Coli In
Complex With A Substrate Analogue, Ribose 5-Phosphate
(Beta Form), Bound To The Active Site Of The Reductase
Domain
pdb|2OBC|B Chain B, The Crystal Structure Of Ribd From Escherichia Coli In
Complex With A Substrate Analogue, Ribose 5-Phosphate
(Beta Form), Bound To The Active Site Of The Reductase
Domain
Length = 402
Score = 33.1 bits (74), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 67/156 (42%), Gaps = 27/156 (17%)
Query: 27 VKDRDHKFLTRAVEEAYKGVECGDGGP-FGAVVVRNDEVVVSCHNMVLKSTDPTAHAEVT 85
++ +D + RA++ A +G P G V+V++ E+V ++ ++ +P HAEV
Sbjct: 26 IQGQDEYYXARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQ--RAGEP--HAEVH 81
Query: 86 AIREACKKLNQIELSDCEIYASCEPC------PMCFGAIHLSRIKRLVYGAKXXXXXXXX 139
A+R A +K Y + EPC P C A+ + + R+V +
Sbjct: 82 ALRXAGEKAK-----GATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASXQ-------- 128
Query: 140 XXXXXXXXLRGTGFYQKAQLEIKKADGTGAAIAEQV 175
+ G G Y+ Q I + G + AEQ+
Sbjct: 129 ---DPNPQVAGRGLYRLQQAGIDVSHGLXXSEAEQL 161
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,036,769
Number of Sequences: 62578
Number of extensions: 176789
Number of successful extensions: 324
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 302
Number of HSP's gapped (non-prelim): 23
length of query: 186
length of database: 14,973,337
effective HSP length: 93
effective length of query: 93
effective length of database: 9,153,583
effective search space: 851283219
effective search space used: 851283219
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)