BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029890
(186 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O34598|GUAD_BACSU Guanine deaminase OS=Bacillus subtilis (strain 168) GN=guaD PE=1
SV=1
Length = 156
Score = 124 bits (312), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 66/129 (51%), Positives = 80/129 (62%), Gaps = 7/129 (5%)
Query: 34 FLTRAVEEAYKGVECGDGGPFGAVVVRNDEVVVSCHNMVLKSTDPTAHAEVTAIREACKK 93
FL RAV A +GV G GGPFGAV+V++ ++ N V S DPTAHAEVTAIR+ACK
Sbjct: 6 FLKRAVTLACEGVNAGIGGPFGAVIVKDGAIIAEGQNNVTTSNDPTAHAEVTAIRKACKV 65
Query: 94 LNQIELSDCEIYASCEPCPMCFGAIHLSRIKRLVYGAKAEAAIAIGFDD-FIADAL---- 148
L +L DC +Y SCEPCPMC GAI+ +R K + Y A+ A GFDD FI +
Sbjct: 66 LGAYQLDDCILYTSCEPCPMCLGAIYWARPKAVFYAAEHTDAAEAGFDDSFIYKEIDKPA 125
Query: 149 --RGTGFYQ 155
R FYQ
Sbjct: 126 EERTIPFYQ 134
>sp|O67050|TADA_AQUAE tRNA-specific adenosine deaminase OS=Aquifex aeolicus (strain VF5)
GN=tadA PE=1 SV=1
Length = 151
Score = 92.0 bits (227), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 44/97 (45%), Positives = 65/97 (67%), Gaps = 1/97 (1%)
Query: 34 FLTRAVEEAYKGVECGDGGPFGAVVVRNDEVVVSCHNMVLKSTDPTAHAEVTAIREACKK 93
FL A+ EA + E G+ P GA++V+ E++ HN V + DPTAHAE+ AI+EAC++
Sbjct: 6 FLKVALREAKRAFEKGEV-PVGAIIVKEGEIISKAHNSVEELKDPTAHAEMLAIKEACRR 64
Query: 94 LNQIELSDCEIYASCEPCPMCFGAIHLSRIKRLVYGA 130
LN L CE+Y + EPC MC A+ LSRI+++++ A
Sbjct: 65 LNTKYLEGCELYVTLEPCIMCSYALVLSRIEKVIFSA 101
>sp|P21335|TADA_BACSU tRNA-specific adenosine deaminase OS=Bacillus subtilis (strain 168)
GN=tadA PE=1 SV=1
Length = 161
Score = 84.3 bits (207), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 42/101 (41%), Positives = 61/101 (60%), Gaps = 1/101 (0%)
Query: 30 RDHKFLTRAVEEAYKGVECGDGGPFGAVVVRNDEVVVSCHNMVLKSTDPTAHAEVTAIRE 89
+D ++ A++EA K E G+ P GAV+V N E++ HN+ AHAE+ I E
Sbjct: 3 QDELYMKEAIKEAKKAEEKGEV-PIGAVLVINGEIIARAHNLRETEQRSIAHAEMLVIDE 61
Query: 90 ACKKLNQIELSDCEIYASCEPCPMCFGAIHLSRIKRLVYGA 130
ACK L L +Y + EPCPMC GA+ LSR++++V+GA
Sbjct: 62 ACKALGTWRLEGATLYVTLEPCPMCAGAVVLSRVEKVVFGA 102
>sp|Q8K9R4|Y246_BUCAP Uncharacterized protein BUsg_246 OS=Buchnera aphidicola subsp.
Schizaphis graminum (strain Sg) GN=BUsg_246 PE=3 SV=1
Length = 151
Score = 84.0 bits (206), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 41/102 (40%), Positives = 64/102 (62%), Gaps = 1/102 (0%)
Query: 29 DRDHKFLTRAVEEAYKGVECGDGGPFGAVVVRNDEVVVSCHNMVLKSTDPTAHAEVTAIR 88
+RD ++ A++ AY E G+ P GA++V ++++ + N V+ D TAHAE+ A+R
Sbjct: 4 NRDSYWMKIALKYAYYAEENGEV-PIGAILVFQEKIIGTGWNSVISQNDSTAHAEIIALR 62
Query: 89 EACKKLNQIELSDCEIYASCEPCPMCFGAIHLSRIKRLVYGA 130
EA + + L + +Y + +PC MC GAI SRIKRLV+GA
Sbjct: 63 EAGRNIKNYRLVNTTLYVTLQPCMMCCGAIINSRIKRLVFGA 104
>sp|P44931|TADA_HAEIN tRNA-specific adenosine deaminase OS=Haemophilus influenzae (strain
ATCC 51907 / DSM 11121 / KW20 / Rd) GN=tadA PE=3 SV=1
Length = 173
Score = 82.0 bits (201), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/121 (41%), Positives = 67/121 (55%), Gaps = 11/121 (9%)
Query: 31 DHKFLTRAVEEAYKGVECGDGGPFGAVVV---RNDEVVVSCHNMVLKSTDPTAHAEVTAI 87
D K + A+E A K G+ P GAV+V RN ++ N+ + +DPTAHAE+ A+
Sbjct: 11 DEKMMRYALELADKAEALGEI-PVGAVLVDDARN--IIGEGWNLSIVQSDPTAHAEIIAL 67
Query: 88 REACKKLNQIELSDCEIYASCEPCPMCFGAIHLSRIKRLVYGAKAEAAIAIG-----FDD 142
R K + L + +Y + EPC MC GAI SRIKRLV+GA AIG FDD
Sbjct: 68 RNGAKNIQNYRLLNSTLYVTLEPCTMCAGAILHSRIKRLVFGASDYKTGAIGSRFHFFDD 127
Query: 143 F 143
+
Sbjct: 128 Y 128
>sp|P57343|Y255_BUCAI Uncharacterized protein BU255 OS=Buchnera aphidicola subsp.
Acyrthosiphon pisum (strain APS) GN=BU255 PE=3 SV=1
Length = 161
Score = 80.5 bits (197), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 64/107 (59%), Gaps = 1/107 (0%)
Query: 29 DRDHKFLTRAVEEAYKGVECGDGGPFGAVVVRNDEVVVSCHNMVLKSTDPTAHAEVTAIR 88
++D ++ A++ AY E G+ P GA++V + ++ N + DPTAHAE+ A+R
Sbjct: 4 EKDKNWMKIALKYAYYAKEKGEI-PIGAILVFKERIIGIGWNSSISKNDPTAHAEIIALR 62
Query: 89 EACKKLNQIELSDCEIYASCEPCPMCFGAIHLSRIKRLVYGAKAEAA 135
A KK+ L + +Y + +PC MC GAI SRIKRLV+GA ++
Sbjct: 63 GAGKKIKNYRLLNTTLYVTLQPCIMCCGAIIQSRIKRLVFGANCNSS 109
>sp|Q9S7I0|TADA_ARATH tRNA-specific adenosine deaminase, chloroplastic OS=Arabidopsis
thaliana GN=TADA PE=1 SV=1
Length = 1307
Score = 79.3 bits (194), Expect = 1e-14, Method: Composition-based stats.
Identities = 41/100 (41%), Positives = 60/100 (60%), Gaps = 1/100 (1%)
Query: 31 DHKFLTRAVEEAYKGVECGDGGPFGAVVVRNDEVVVSCHNMVLKSTDPTAHAEVTAIREA 90
D F+ A+ EA K + + P GAV+V + +++ +N+V + D TAHAE+ IRE
Sbjct: 1110 DEIFMREALVEAKKAADTWEV-PVGAVLVHDGKIIARGYNLVEELRDSTAHAEMICIREG 1168
Query: 91 CKKLNQIELSDCEIYASCEPCPMCFGAIHLSRIKRLVYGA 130
K L L+D +Y + EPCPMC GAI +R+ LV+GA
Sbjct: 1169 SKALRSWRLADTTLYVTLEPCPMCAGAILQARVNTLVWGA 1208
>sp|Q89AM8|Y236_BUCBP Uncharacterized protein bbp_236 OS=Buchnera aphidicola subsp.
Baizongia pistaciae (strain Bp) GN=bbp_236 PE=3 SV=1
Length = 162
Score = 76.3 bits (186), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/105 (41%), Positives = 59/105 (56%), Gaps = 1/105 (0%)
Query: 27 VKDRDHKFLTRAVEEAYKGVECGDGGPFGAVVVRNDEVVVSCHNMVLKSTDPTAHAEVTA 86
+ D D F+ A+ A K E P GAV+V N+ ++ N + + DPTAHAE+ A
Sbjct: 1 MHDSDKYFMKCAIFLA-KISEMIGEVPVGAVLVFNNTIIGKGLNSSILNHDPTAHAEIKA 59
Query: 87 IREACKKLNQIELSDCEIYASCEPCPMCFGAIHLSRIKRLVYGAK 131
+R K L L +Y + EPC MC+GAI SRI RLV+GAK
Sbjct: 60 LRNGAKFLKNYRLLHTTLYVTLEPCIMCYGAIIHSRISRLVFGAK 104
>sp|Q68Y02|Y819_RICTY Uncharacterized deaminase RT0819 OS=Rickettsia typhi (strain ATCC
VR-144 / Wilmington) GN=RT0819 PE=3 SV=1
Length = 148
Score = 75.9 bits (185), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 50/80 (62%), Gaps = 2/80 (2%)
Query: 53 PFGAVVVR--NDEVVVSCHNMVLKSTDPTAHAEVTAIREACKKLNQIELSDCEIYASCEP 110
P G V+V N +++VS HN + + + HAE+ AI EAC ++ L+D +IY + EP
Sbjct: 18 PVGVVIVYRLNQKIIVSSHNNIEEKNNALCHAEIIAINEACNLISSKNLNDYDIYVTLEP 77
Query: 111 CPMCFGAIHLSRIKRLVYGA 130
C MC AI SR+KRL YGA
Sbjct: 78 CAMCASAISHSRLKRLFYGA 97
>sp|Q4UJW9|Y1319_RICFE Uncharacterized deaminase RF_1319 OS=Rickettsia felis (strain ATCC
VR-1525 / URRWXCal2) GN=RF_1319 PE=3 SV=2
Length = 144
Score = 75.9 bits (185), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 37/80 (46%), Positives = 50/80 (62%), Gaps = 2/80 (2%)
Query: 53 PFGAVVV--RNDEVVVSCHNMVLKSTDPTAHAEVTAIREACKKLNQIELSDCEIYASCEP 110
P GAV+V N +++VS HN + + HAE+ AI EAC ++ L+D +IY + EP
Sbjct: 18 PVGAVIVDRLNQKIIVSSHNNTEEKNNALYHAEIIAINEACNLISSKNLNDYDIYVTLEP 77
Query: 111 CPMCFGAIHLSRIKRLVYGA 130
C MC AI SR+KRL YGA
Sbjct: 78 CAMCAAAIAHSRLKRLFYGA 97
>sp|Q9ZCC6|Y831_RICPR Uncharacterized deaminase RP831 OS=Rickettsia prowazekii (strain
Madrid E) GN=RP831 PE=3 SV=1
Length = 148
Score = 75.5 bits (184), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 50/80 (62%), Gaps = 2/80 (2%)
Query: 53 PFGAVVV--RNDEVVVSCHNMVLKSTDPTAHAEVTAIREACKKLNQIELSDCEIYASCEP 110
P G V+V N +++VS HN + + +P HAE+ AI AC ++ L+D +IY + EP
Sbjct: 18 PVGVVIVCRLNQKIIVSSHNNIEEKKNPLCHAEIIAINTACNLISSKNLNDYDIYVTLEP 77
Query: 111 CPMCFGAIHLSRIKRLVYGA 130
C MC AI SR+KRL YGA
Sbjct: 78 CAMCASAISHSRLKRLFYGA 97
>sp|Q8FF24|TADA_ECOL6 tRNA-specific adenosine deaminase OS=Escherichia coli O6:H1 (strain
CFT073 / ATCC 700928 / UPEC) GN=tadA PE=3 SV=2
Length = 167
Score = 73.9 bits (180), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 57/107 (53%), Gaps = 3/107 (2%)
Query: 53 PFGAVVVRNDEVVVSCHNMVLKSTDPTAHAEVTAIREACKKLNQIELSDCEIYASCEPCP 112
P GAV+V N+ V+ N + DPTAHAE+ A+R+ + L D +Y + EPC
Sbjct: 29 PVGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQGGLVMQNYRLIDATLYVTLEPCV 88
Query: 113 MCFGAIHLSRIKRLVYGAKAEAAIAIGFDDFIADALRGTGFYQKAQL 159
MC GA+ SRI R+V+GA+ A G + D L G + ++
Sbjct: 89 MCAGAMIHSRIGRVVFGARDAKTGAAG---SLMDVLHHPGMNHRVEI 132
>sp|Q8XA44|TADA_ECO57 tRNA-specific adenosine deaminase OS=Escherichia coli O157:H7
GN=tadA PE=3 SV=2
Length = 167
Score = 73.9 bits (180), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 57/107 (53%), Gaps = 3/107 (2%)
Query: 53 PFGAVVVRNDEVVVSCHNMVLKSTDPTAHAEVTAIREACKKLNQIELSDCEIYASCEPCP 112
P GAV+V N+ V+ N + DPTAHAE+ A+R+ + L D +Y + EPC
Sbjct: 29 PVGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQGGLVMQNYRLIDATLYVTLEPCV 88
Query: 113 MCFGAIHLSRIKRLVYGAKAEAAIAIGFDDFIADALRGTGFYQKAQL 159
MC GA+ SRI R+V+GA+ A G + D L G + ++
Sbjct: 89 MCAGAMIHSRIGRVVFGARDAKTGAAG---SLMDVLHHPGMNHRVEI 132
>sp|P68397|TADA_SHIFL tRNA-specific adenosine deaminase OS=Shigella flexneri GN=tadA PE=3
SV=2
Length = 167
Score = 73.9 bits (180), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 57/107 (53%), Gaps = 3/107 (2%)
Query: 53 PFGAVVVRNDEVVVSCHNMVLKSTDPTAHAEVTAIREACKKLNQIELSDCEIYASCEPCP 112
P GAV+V N+ V+ N + DPTAHAE+ A+R+ + L D +Y + EPC
Sbjct: 29 PVGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQGGLVMQNYRLIDATLYVTLEPCV 88
Query: 113 MCFGAIHLSRIKRLVYGAKAEAAIAIGFDDFIADALRGTGFYQKAQL 159
MC GA+ SRI R+V+GA+ A G + D L G + ++
Sbjct: 89 MCAGAMIHSRIGRVVFGARDAKTGAAG---SLMDVLHHPGMNHRVEI 132
>sp|Q7CQ08|TADA_SALTY tRNA-specific adenosine deaminase OS=Salmonella typhimurium (strain
LT2 / SGSC1412 / ATCC 700720) GN=tadA PE=3 SV=2
Length = 172
Score = 73.9 bits (180), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 62/129 (48%), Gaps = 3/129 (2%)
Query: 31 DHKFLTRAVEEAYKGVECGDGGPFGAVVVRNDEVVVSCHNMVLKSTDPTAHAEVTAIREA 90
DH++ R K P GAV+V N V+ N + DPTAHAE+ A+R+
Sbjct: 7 DHEYWMRHALTLAKRAWDEREVPVGAVLVHNHRVIGEGWNRPIGRHDPTAHAEIMALRQG 66
Query: 91 CKKLNQIELSDCEIYASCEPCPMCFGAIHLSRIKRLVYGAKAEAAIAIGFDDFIADALRG 150
L L D +Y + EPC MC GA+ SRI R+V+GA+ A G + D L
Sbjct: 67 GLVLQNYRLLDTTLYVTLEPCVMCAGAMVHSRIGRVVFGARDAKTGAAG---SLIDVLHH 123
Query: 151 TGFYQKAQL 159
G + ++
Sbjct: 124 PGMNHRVEI 132
>sp|Q8XGY4|TADA_SALTI tRNA-specific adenosine deaminase OS=Salmonella typhi GN=tadA PE=3
SV=2
Length = 172
Score = 73.9 bits (180), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 62/129 (48%), Gaps = 3/129 (2%)
Query: 31 DHKFLTRAVEEAYKGVECGDGGPFGAVVVRNDEVVVSCHNMVLKSTDPTAHAEVTAIREA 90
DH++ R K P GAV+V N V+ N + DPTAHAE+ A+R+
Sbjct: 7 DHEYWMRHALTLAKRAWDEREVPVGAVLVHNHRVIGEGWNRPIGRHDPTAHAEIMALRQG 66
Query: 91 CKKLNQIELSDCEIYASCEPCPMCFGAIHLSRIKRLVYGAKAEAAIAIGFDDFIADALRG 150
L L D +Y + EPC MC GA+ SRI R+V+GA+ A G + D L
Sbjct: 67 GLVLQNYRLLDTTLYVTLEPCVMCAGAMVHSRIGRVVFGARDAKTGAAG---SLIDVLHH 123
Query: 151 TGFYQKAQL 159
G + ++
Sbjct: 124 PGMNHRVEI 132
>sp|P68398|TADA_ECOLI tRNA-specific adenosine deaminase OS=Escherichia coli (strain K12)
GN=tadA PE=1 SV=2
Length = 167
Score = 73.9 bits (180), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 57/107 (53%), Gaps = 3/107 (2%)
Query: 53 PFGAVVVRNDEVVVSCHNMVLKSTDPTAHAEVTAIREACKKLNQIELSDCEIYASCEPCP 112
P GAV+V N+ V+ N + DPTAHAE+ A+R+ + L D +Y + EPC
Sbjct: 29 PVGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQGGLVMQNYRLIDATLYVTLEPCV 88
Query: 113 MCFGAIHLSRIKRLVYGAKAEAAIAIGFDDFIADALRGTGFYQKAQL 159
MC GA+ SRI R+V+GA+ A G + D L G + ++
Sbjct: 89 MCAGAMIHSRIGRVVFGARDAKTGAAG---SLMDVLHHPGMNHRVEI 132
>sp|Q1RGK7|Y1426_RICBR Uncharacterized deaminase RBE_1426 OS=Rickettsia bellii (strain
RML369-C) GN=RBE_1426 PE=3 SV=2
Length = 145
Score = 72.0 bits (175), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 49/80 (61%), Gaps = 2/80 (2%)
Query: 53 PFGAVVV--RNDEVVVSCHNMVLKSTDPTAHAEVTAIREACKKLNQIELSDCEIYASCEP 110
P GAV+V N +++ +N + + HAE+ AI EAC+ ++ LSD +IY + EP
Sbjct: 18 PVGAVIVDRENQKIISKSYNNTEEKNNALYHAEIIAINEACRIISSKNLSDYDIYVTLEP 77
Query: 111 CPMCFGAIHLSRIKRLVYGA 130
C MC AI SR+KRL YGA
Sbjct: 78 CAMCAAAIAHSRLKRLFYGA 97
>sp|Q92G39|Y1285_RICCN Uncharacterized deaminase RC1285 OS=Rickettsia conorii (strain ATCC
VR-613 / Malish 7) GN=RC1285 PE=3 SV=2
Length = 153
Score = 72.0 bits (175), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 49/80 (61%), Gaps = 2/80 (2%)
Query: 53 PFGAVVV--RNDEVVVSCHNMVLKSTDPTAHAEVTAIREACKKLNQIELSDCEIYASCEP 110
P GAVVV + +++ S HN + + HAE+ AI EAC ++ L+D +IY + EP
Sbjct: 18 PVGAVVVDRLHQKIIASTHNNTEEKNNALYHAEIIAINEACNLISSKNLNDYDIYVTLEP 77
Query: 111 CPMCFGAIHLSRIKRLVYGA 130
C MC AI SR+KRL YGA
Sbjct: 78 CAMCAAAIAHSRLKRLFYGA 97
>sp|P0DA21|TADA_STRPQ tRNA-specific adenosine deaminase OS=Streptococcus pyogenes
serotype M3 (strain SSI-1) GN=tadA PE=3 SV=1
Length = 171
Score = 68.6 bits (166), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 56/100 (56%), Gaps = 1/100 (1%)
Query: 34 FLTRAVEEAYKGVECGDGGPFGAVVVRNDEVVVSCHNMVLKSTDPTAHAEVTAIREACKK 93
F+ A++EA K ++ + P G V+V++ E++ HN +S HAE+ AI EA
Sbjct: 11 FMQEALKEAEKSLQKAEI-PIGCVIVKDGEIIGRGHNAREESNQAIMHAEMMAINEANAH 69
Query: 94 LNQIELSDCEIYASCEPCPMCFGAIHLSRIKRLVYGAKAE 133
L D ++ + EPC MC GAI L+RI ++YGA +
Sbjct: 70 EGNWRLLDTTLFVTIEPCVMCSGAIGLARIPHVIYGASNQ 109
>sp|Q5XE14|TADA_STRP6 tRNA-specific adenosine deaminase OS=Streptococcus pyogenes
serotype M6 (strain ATCC BAA-946 / MGAS10394) GN=tadA
PE=1 SV=2
Length = 171
Score = 68.6 bits (166), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 56/100 (56%), Gaps = 1/100 (1%)
Query: 34 FLTRAVEEAYKGVECGDGGPFGAVVVRNDEVVVSCHNMVLKSTDPTAHAEVTAIREACKK 93
F+ A++EA K ++ + P G V+V++ E++ HN +S HAE+ AI EA
Sbjct: 11 FMQEALKEAEKSLQKAEI-PIGCVIVKDGEIIGRGHNAREESNQAIMHAEMMAINEANAH 69
Query: 94 LNQIELSDCEIYASCEPCPMCFGAIHLSRIKRLVYGAKAE 133
L D ++ + EPC MC GAI L+RI ++YGA +
Sbjct: 70 EGNWRLLDTTLFVTIEPCVMCSGAIGLARIPHVIYGASNQ 109
>sp|P0DA20|TADA_STRP3 tRNA-specific adenosine deaminase OS=Streptococcus pyogenes
serotype M3 (strain ATCC BAA-595 / MGAS315) GN=tadA PE=3
SV=1
Length = 171
Score = 68.6 bits (166), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 56/100 (56%), Gaps = 1/100 (1%)
Query: 34 FLTRAVEEAYKGVECGDGGPFGAVVVRNDEVVVSCHNMVLKSTDPTAHAEVTAIREACKK 93
F+ A++EA K ++ + P G V+V++ E++ HN +S HAE+ AI EA
Sbjct: 11 FMQEALKEAEKSLQKAEI-PIGCVIVKDGEIIGRGHNAREESNQAIMHAEMMAINEANAH 69
Query: 94 LNQIELSDCEIYASCEPCPMCFGAIHLSRIKRLVYGAKAE 133
L D ++ + EPC MC GAI L+RI ++YGA +
Sbjct: 70 EGNWRLLDTTLFVTIEPCVMCSGAIGLARIPHVIYGASNQ 109
>sp|P68999|TADA_STRP1 tRNA-specific adenosine deaminase OS=Streptococcus pyogenes
serotype M1 GN=tadA PE=3 SV=1
Length = 171
Score = 68.2 bits (165), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 56/100 (56%), Gaps = 1/100 (1%)
Query: 34 FLTRAVEEAYKGVECGDGGPFGAVVVRNDEVVVSCHNMVLKSTDPTAHAEVTAIREACKK 93
F+ A++EA K ++ + P G V+V++ E++ HN +S HAE+ AI EA
Sbjct: 11 FMQEALKEAEKSLQKAEI-PIGCVIVKDGEIIGRGHNAREESNQAIMHAEMMAINEANAH 69
Query: 94 LNQIELSDCEIYASCEPCPMCFGAIHLSRIKRLVYGAKAE 133
L D ++ + EPC MC GAI L+RI ++YGA +
Sbjct: 70 EGNWRLLDTTLFVTIEPCVMCSGAIGLARIPHVIYGASNQ 109
>sp|Q8P2R7|Y196_STRP8 Uncharacterized deaminase spyM18_0196 OS=Streptococcus pyogenes
serotype M18 (strain MGAS8232) GN=spyM18_0196 PE=3 SV=1
Length = 159
Score = 68.2 bits (165), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 56/100 (56%), Gaps = 1/100 (1%)
Query: 34 FLTRAVEEAYKGVECGDGGPFGAVVVRNDEVVVSCHNMVLKSTDPTAHAEVTAIREACKK 93
F+ A++EA K ++ + P G V+V++ E++ HN +S HAE+ AI EA
Sbjct: 11 FMQEALKEAEKSLQKAEI-PIGCVIVKDGEIIGRGHNAREESNQAIMHAEMMAINEANAH 69
Query: 94 LNQIELSDCEIYASCEPCPMCFGAIHLSRIKRLVYGAKAE 133
L D ++ + EPC MC GAI L+RI ++YGA +
Sbjct: 70 EGNWRLLDTTLFVTIEPCVMCSGAIGLARIPHVIYGASNQ 109
>sp|C1D1Q9|TILS_DEIDV tRNA(Ile)-lysidine synthase OS=Deinococcus deserti (strain VCD115 /
DSM 17065 / LMG 22923) GN=tilS PE=3 SV=1
Length = 533
Score = 67.8 bits (164), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 50/88 (56%), Gaps = 1/88 (1%)
Query: 53 PFGAVVV-RNDEVVVSCHNMVLKSTDPTAHAEVTAIREACKKLNQIELSDCEIYASCEPC 111
P GAVV+ ++ S N +D T HAE+ A+R A +L L+ C + + EPC
Sbjct: 400 PVGAVVLGPGGRIIGSGRNTSRADSDMTRHAELAALRAATAELGTAYLTGCTLVVTLEPC 459
Query: 112 PMCFGAIHLSRIKRLVYGAKAEAAIAIG 139
PMC GA +R++R+VYGA A A+G
Sbjct: 460 PMCLGAALEARVERIVYGASNPKAGALG 487
>sp|O59834|FCYS_SCHPO Probable cytosine deaminase OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=SPCC965.14c PE=3 SV=1
Length = 162
Score = 63.5 bits (153), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 61/113 (53%), Gaps = 5/113 (4%)
Query: 27 VKDRDHKFLTRAVEEAYKGVECGDGGPFGAVVV-RNDEVVVSCHNMVLKSTDPTAHAEVT 85
+ ++D +L A++ + + + G PFG ++V ND V++S N V D T HAE
Sbjct: 6 LSEKDLAYLREAIKVSQQARDEGQH-PFGCIIVDENDNVIMSAGNRV-PDGDVTQHAETR 63
Query: 86 AIREACKKLNQIELSDCEIYASCEPCPMCFGAIHLSRIKRLVYGAKAEAAIAI 138
A+ K + +L C +Y S EPC MC GAI S I+R+++G E I +
Sbjct: 64 AVGLITK--TRRDLEKCTLYTSTEPCAMCSGAIFWSGIRRMIFGLSNENLIKL 114
>sp|Q9RV23|TILS_DEIRA tRNA(Ile)-lysidine synthase OS=Deinococcus radiodurans (strain ATCC
13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 /
NCIMB 9279 / R1 / VKM B-1422) GN=tilS PE=3 SV=2
Length = 582
Score = 60.1 bits (144), Expect = 9e-09, Method: Composition-based stats.
Identities = 43/96 (44%), Positives = 54/96 (56%), Gaps = 2/96 (2%)
Query: 53 PFGAVVVRND-EVVVSCHNMVLKSTDPTAHAEVTAIREACKKLNQIELSDCEIYASCEPC 111
P GAVV+ D E+V N + D T HAE+ A+REA L LSDC + + EPC
Sbjct: 425 PVGAVVLNADGEIVGRGRNTSREDGDMTCHAELAALREAAAGLGTPYLSDCTLVVTLEPC 484
Query: 112 PMCFGAIHLSRIKRLVYGAKAEAAIAI-GFDDFIAD 146
PMC GA +RI +VYGA A A+ G D +AD
Sbjct: 485 PMCLGAALEARIGHIVYGAANPKAGALGGVSDLLAD 520
>sp|P78594|FCA1_CANAX Cytosine deaminase OS=Candida albicans GN=FCA1 PE=3 SV=1
Length = 150
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 52/100 (52%), Gaps = 3/100 (3%)
Query: 31 DHKFLTRAVEEAYKGVECGDGGPFGAVVVRNDEVVV-SCHNMVLKSTDPTAHAEVTAIRE 89
D K L A+++A K G G P G+ ++ +D+ V+ HN ++ H E++A+
Sbjct: 5 DKKGLQVALDQAKKSYSEG-GIPIGSCIISSDDTVLGQGHNERIQKHSAILHGEMSALEN 63
Query: 90 ACKKLNQIELSDCEIYASCEPCPMCFGAIHLSRIKRLVYG 129
A +L DC IY + PC MC GAI L KR+V G
Sbjct: 64 A-GRLPGKTYKDCTIYTTLSPCSMCTGAILLYGFKRVVMG 102
>sp|Q5RIV4|ADAT2_DANRE tRNA-specific adenosine deaminase 2 OS=Danio rerio GN=adat2 PE=2
SV=2
Length = 214
Score = 54.3 bits (129), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 65/129 (50%), Gaps = 10/129 (7%)
Query: 32 HKFLTRAVEEAYKGVECGDGGPFGAVVVRNDEVVVSCHNMVLKSTDPTAHAEVTAIREAC 91
++ +A + A + +E G+ P G ++V N+E++ N V ++ + T HAE+ A+ +
Sbjct: 22 QTWMAKAFDMAVEALENGEV-PVGCLMVYNNEIIGKGRNEVNETKNATRHAEMVALDQVL 80
Query: 92 KKLNQIELSDCE-------IYASCEPCPMCFGAIHLSRIKRLVYGAKAEAAIAIG-FDDF 143
++ DC+ +Y + EPC MC A+ L RI +VYG K E G D
Sbjct: 81 DWC-RLREKDCKEVCEQTVLYVTVEPCIMCAAALRLLRIPFVVYGCKNERFGGCGSVLDV 139
Query: 144 IADALRGTG 152
+D L TG
Sbjct: 140 SSDHLPHTG 148
>sp|Q12178|FCY1_YEAST Cytosine deaminase OS=Saccharomyces cerevisiae (strain ATCC 204508
/ S288c) GN=FCY1 PE=1 SV=1
Length = 158
Score = 54.3 bits (129), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 49/101 (48%), Gaps = 4/101 (3%)
Query: 31 DHKFLTRAVEEAYKGVECGDGGPFGAVVVRNDE--VVVSCHNMVLKSTDPTAHAEVTAIR 88
D K + A EEA G + G G P G ++ N + V+ HNM + T H E++ +
Sbjct: 11 DQKGMDIAYEEAALGYKEG-GVPIGGCLINNKDGSVLGRGHNMRFQKGSATLHGEISTL- 68
Query: 89 EACKKLNQIELSDCEIYASCEPCPMCFGAIHLSRIKRLVYG 129
E C +L D +Y + PC MC GAI + I R V G
Sbjct: 69 ENCGRLEGKVYKDTTLYTTLSPCDMCTGAIIMYGIPRCVVG 109
>sp|Q5E9J7|ADAT2_BOVIN tRNA-specific adenosine deaminase 2 OS=Bos taurus GN=DEADC1 PE=2
SV=1
Length = 191
Score = 53.5 bits (127), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 46/87 (52%), Gaps = 6/87 (6%)
Query: 53 PFGAVVVRNDEVVVSCHNMVLKSTDPTAHAEVTAIREACKKLNQIELSDCEI------YA 106
P G ++V N+EVV N V ++ + T HAE+ AI +A + S E+ Y
Sbjct: 43 PVGCLMVYNNEVVGKGRNEVNQTKNATRHAEMVAIDQALDWCRRRGRSPSEVFEHTVLYV 102
Query: 107 SCEPCPMCFGAIHLSRIKRLVYGAKAE 133
+ EPC MC A+ L RI +VYG + E
Sbjct: 103 TVEPCIMCAAALRLMRIPLVVYGCQNE 129
>sp|Q7Z6V5|ADAT2_HUMAN tRNA-specific adenosine deaminase 2 OS=Homo sapiens GN=ADAT2 PE=1
SV=1
Length = 191
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 62/131 (47%), Gaps = 8/131 (6%)
Query: 29 DRDHKFLTRAVEEAYKGVECGDGGPFGAVVVRNDEVVVSCHNMVLKSTDPTAHAEVTAIR 88
+ K++ A+ A + +E P G ++V N+EVV N V ++ + T HAE+ AI
Sbjct: 20 EETEKWMEEAMHMAKEALE-NTEVPVGCLMVYNNEVVGKGRNEVNQTKNATRHAEMVAID 78
Query: 89 EACKKLNQIELSDCEI------YASCEPCPMCFGAIHLSRIKRLVYGAKAEAAIAIGFDD 142
+ Q S E+ Y + EPC MC A+ L +I +VYG + E G
Sbjct: 79 QVLDWCRQSGKSPSEVFEHTVLYVTVEPCIMCAAALRLMKIPLVVYGCQNERFGGCGSVL 138
Query: 143 FIADA-LRGTG 152
IA A L TG
Sbjct: 139 NIASADLPNTG 149
>sp|Q6P6J0|ADAT2_MOUSE tRNA-specific adenosine deaminase 2 OS=Mus musculus GN=Adat2 PE=2
SV=1
Length = 191
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 72/158 (45%), Gaps = 18/158 (11%)
Query: 2 EDANSVETKDGAIAVAPAFPGHQEAVKDRDHKFLTRAVEEAYKGVECGDGGPFGAVVVRN 61
E S T DG V+ QE K + R +EA + +E P G ++V N
Sbjct: 3 EKVESTTTPDGPCVVS-----VQETEKWMEEAM--RMAKEALENIEV----PVGCLMVYN 51
Query: 62 DEVVVSCHNMVLKSTDPTAHAEVTAIREA---CKKLNQIELSDCE---IYASCEPCPMCF 115
+EVV N V ++ + T HAE+ AI + C + Q + E +Y + EPC MC
Sbjct: 52 NEVVGKGRNEVNQTKNATRHAEMVAIDQVLDWCHQHGQSPSTVFEHTVLYVTVEPCIMCA 111
Query: 116 GAIHLSRIKRLVYGAKAEAAIAIGFDDFIADA-LRGTG 152
A+ L +I +VYG + E G IA A L TG
Sbjct: 112 AALRLMKIPLVVYGCQNERFGGCGSVLNIASADLPNTG 149
>sp|Q0P4H0|ADAT2_XENTR tRNA-specific adenosine deaminase 2 OS=Xenopus tropicalis GN=adat2
PE=2 SV=1
Length = 170
Score = 50.8 bits (120), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 58/108 (53%), Gaps = 7/108 (6%)
Query: 32 HKFLTRAVEEAYKGVECGDGGPFGAVVVRNDEVVVSCHNMVLKSTDPTAHAEVTAIREA- 90
++ +A + A + G+ P G ++V +++VV N V ++ + T HAE+ AI +
Sbjct: 6 QNWMHKAFQMAQDALNNGEV-PVGCLMVYDNQVVGKGRNEVNETKNATRHAEMVAIDQVL 64
Query: 91 --CKKLNQIE---LSDCEIYASCEPCPMCFGAIHLSRIKRLVYGAKAE 133
C+K ++ + +Y + EPC MC GA+ L +I +VYG + E
Sbjct: 65 DWCEKNSKKSRDVFENIVLYVTVEPCIMCAGALRLLKIPLVVYGCRNE 112
>sp|Q4V7V8|ADAT2_XENLA tRNA-specific adenosine deaminase 2 OS=Xenopus laevis GN=adat2 PE=2
SV=1
Length = 175
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 59/113 (52%), Gaps = 7/113 (6%)
Query: 27 VKDRDHKFLTRAVEEAYKGVECGDGGPFGAVVVRNDEVVVSCHNMVLKSTDPTAHAEVTA 86
+ + ++ +A + A + G+ P G ++V ++VV N V ++ + T HAE+ A
Sbjct: 6 ITEEIQNWMHKAFQMAQDALNNGEV-PVGCLMVYGNQVVGKGRNEVNETKNATQHAEMVA 64
Query: 87 IREACK--KLNQIELSDC----EIYASCEPCPMCFGAIHLSRIKRLVYGAKAE 133
I + ++N + +D +Y + EPC MC GA+ L +I +VYG + E
Sbjct: 65 IDQVLDWCEMNSKKSTDVFENIVLYVTVEPCIMCAGALRLLKIPLVVYGCRNE 117
>sp|Q5SI38|TILS_THET8 tRNA(Ile)-lysidine synthase OS=Thermus thermophilus (strain HB8 /
ATCC 27634 / DSM 579) GN=tilS PE=3 SV=1
Length = 507
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 43/79 (54%), Gaps = 7/79 (8%)
Query: 53 PFGAVVVRNDEVVVSCHNMVLKSTDPTAHAEVTAIREACKKLNQIELSDCEIYASCEPCP 112
P GAV+V V+ HN V DPTAHAE+ +REA E +Y + EPC
Sbjct: 393 PVGAVLVLPGRVL-RAHNRVEGLRDPTAHAEMLLLREAGP-----EARGGRLYVTLEPCL 446
Query: 113 MCFGAIHLSRIKRLVYGAK 131
MC A+ + ++ +VYGA+
Sbjct: 447 MCHHALAQAGVE-VVYGAE 464
>sp|Q72IF6|TILS_THET2 tRNA(Ile)-lysidine synthase OS=Thermus thermophilus (strain HB27 /
ATCC BAA-163 / DSM 7039) GN=tilS PE=3 SV=1
Length = 507
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 43/79 (54%), Gaps = 7/79 (8%)
Query: 53 PFGAVVVRNDEVVVSCHNMVLKSTDPTAHAEVTAIREACKKLNQIELSDCEIYASCEPCP 112
P GAV+V V+ HN V DPTAHAE+ +REA E +Y + EPC
Sbjct: 393 PVGAVLVLPGRVL-RAHNRVEGLRDPTAHAEMLLLREAGP-----EARGGRLYVTLEPCL 446
Query: 113 MCFGAIHLSRIKRLVYGAK 131
MC A+ + ++ +VYGA+
Sbjct: 447 MCHHALAQAGVE-VVYGAE 464
>sp|P00814|DCTD_BPT2 Deoxycytidylate deaminase OS=Enterobacteria phage T2 GN=CD PE=1
SV=1
Length = 188
Score = 37.7 bits (86), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
Query: 75 STDPTAHAEVTAIREACKKLNQIELSDCEIYASCEPCPMCFGAIHLSRIKRLVYGAKAEA 134
S+ HAE+ AI A + + IE +Y + PCP C AI S IK+LVY +
Sbjct: 98 SSKNEIHAELNAILFAARNGSSIE--GATMYVTLSPCPDCAKAIAQSGIKKLVYCETYDK 155
Query: 135 AIAIGFDDFIADA 147
G+DD + +A
Sbjct: 156 N-KPGWDDILRNA 167
>sp|P16006|DCTD_BPT4 Deoxycytidylate deaminase OS=Enterobacteria phage T4 GN=CD PE=1
SV=1
Length = 193
Score = 37.7 bits (86), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 38/73 (52%), Gaps = 3/73 (4%)
Query: 75 STDPTAHAEVTAIREACKKLNQIELSDCEIYASCEPCPMCFGAIHLSRIKRLVYGAKAEA 134
S+ HAE+ AI A + + IE + +Y + PCP C AI S IK+LVY +
Sbjct: 98 SSKNEIHAELNAILFAARNGSSIEGAT--MYVTLSPCPDCAKAIAQSGIKKLVYCETYDK 155
Query: 135 AIAIGFDDFIADA 147
G+DD + +A
Sbjct: 156 N-KPGWDDILRNA 167
>sp|Q9URQ3|TAD3_YEAST tRNA-specific adenosine deaminase subunit TAD3 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=TAD3 PE=1
SV=1
Length = 322
Score = 37.4 bits (85), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 50/110 (45%), Gaps = 21/110 (19%)
Query: 35 LTRAVEEAYKGVECGDGGPFGAVVV----RNDEVVV----SCHNMVLKSTDPTAHAEVTA 86
L+RA + K G P +V V + D+VV +C N + P H+ +
Sbjct: 167 LSRASTLSVKMATAGKQFPMVSVFVDPSRKKDKVVAEDGRNCENSL-----PIDHSVMVG 221
Query: 87 IREACKKL--------NQIELSDCEIYASCEPCPMCFGAIHLSRIKRLVY 128
IR ++L N D ++Y + EPC MC A+ SR++R+V+
Sbjct: 222 IRAVGERLREGVDEDANSYLCLDYDVYLTHEPCSMCSMALIHSRVRRVVF 271
>sp|Q9P7N4|TAD3_SCHPO tRNA-specific adenosine deaminase subunit tad3
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=tad3 PE=3 SV=1
Length = 315
Score = 33.9 bits (76), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 14/71 (19%)
Query: 74 KSTDPTAHAEVTAI-----REACKKLNQIELS-------DCEIYASCEPCPMC-FGAIHL 120
K +P H + AI RE ++ N+ + S D + + EPC MC G +H
Sbjct: 204 KLKNPINHCVMNAINLVAKRELSRRQNRTDGSKDRYLCKDLTVVMTHEPCVMCSMGLLH- 262
Query: 121 SRIKRLVYGAK 131
SRI+RL+Y K
Sbjct: 263 SRIRRLIYCKK 273
>sp|O94642|TAD2_SCHPO tRNA-specific adenosine deaminase subunit tad2
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=tad2 PE=3 SV=2
Length = 389
Score = 33.1 bits (74), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 32/78 (41%)
Query: 52 GPFGAVVVRNDEVVVSCHNMVLKSTDPTAHAEVTAIREACKKLNQIELSDCEIYASCEPC 111
P V V EV+ N S HAE+ AI + + + +Y + EPC
Sbjct: 237 SPGSCVFVYKGEVIGRGFNETNCSLSGIRHAELIAIEKILEHYPASVFKETTLYVTVEPC 296
Query: 112 PMCFGAIHLSRIKRLVYG 129
MC A+ IK + +G
Sbjct: 297 LMCAAALKQLHIKAVYFG 314
>sp|Q9CCA7|Y1075_MYCLE Putative O-methyltransferase ML1075 OS=Mycobacterium leprae (strain
TN) GN=ML1075 PE=3 SV=1
Length = 224
Score = 33.1 bits (74), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 11/88 (12%)
Query: 21 PGHQEAVKDRDHKFLTRAVEEAYKGVECGDGGPFG--AVVVRNDEVVVSCHNMVL----- 73
P + R LTR +E+Y V D P A VV ++ SC +V+
Sbjct: 119 PSRTRLISGRGQDVLTRLADESYDLVFI-DADPIDQPAYVVEGVRLLRSCGIIVVHRAAL 177
Query: 74 --KSTDPTAH-AEVTAIREACKKLNQIE 98
++ DP A AEVTA+REA + + + E
Sbjct: 178 GGRAGDPAARDAEVTAVREAARLIAENE 205
>sp|B8ZQZ1|Y1075_MYCLB Putative O-methyltransferase MLBr01075 OS=Mycobacterium leprae
(strain Br4923) GN=MLBr01075 PE=3 SV=1
Length = 224
Score = 33.1 bits (74), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 11/88 (12%)
Query: 21 PGHQEAVKDRDHKFLTRAVEEAYKGVECGDGGPFG--AVVVRNDEVVVSCHNMVL----- 73
P + R LTR +E+Y V D P A VV ++ SC +V+
Sbjct: 119 PSRTRLISGRGQDVLTRLADESYDLVFI-DADPIDQPAYVVEGVRLLRSCGIIVVHRAAL 177
Query: 74 --KSTDPTAH-AEVTAIREACKKLNQIE 98
++ DP A AEVTA+REA + + + E
Sbjct: 178 GGRAGDPAARDAEVTAVREAARLIAENE 205
>sp|C5BWR2|PNP_BEUC1 Polyribonucleotide nucleotidyltransferase OS=Beutenbergia cavernae
(strain ATCC BAA-8 / DSM 12333 / NBRC 16432) GN=pnp PE=3
SV=1
Length = 744
Score = 32.3 bits (72), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 33/71 (46%), Gaps = 12/71 (16%)
Query: 111 CPMCFGAIHLSRIKRLVYGAKAEAAIAIGFDDFIADALRGTGFYQKAQLEIKKADGTGAA 170
P G +H+S+I+RLV G + E + D L G QK Q+EI + D G
Sbjct: 672 TPGKDGLLHISQIRRLVGGKRVEN---------VEDVL---GVGQKVQVEIAEIDPRGKL 719
Query: 171 IAEQVFEKTKA 181
V E+T A
Sbjct: 720 SLHAVVEETPA 730
>sp|Q8JFW4|ADAT3_DANRE Probable inactive tRNA-specific adenosine deaminase-like protein 3
OS=Danio rerio GN=adat3 PE=2 SV=2
Length = 336
Score = 32.0 bits (71), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 103 EIYASCEPCPMCFGAIHLSRIKRLVYGA 130
++Y + EPC MC A+ SRI R+ YGA
Sbjct: 269 DLYVTREPCVMCAMALVHSRISRVFYGA 296
>sp|Q6PAT0|ADAT3_MOUSE Probable inactive tRNA-specific adenosine deaminase-like protein 3
OS=Mus musculus GN=Adat3 PE=2 SV=1
Length = 349
Score = 32.0 bits (71), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 21/30 (70%)
Query: 103 EIYASCEPCPMCFGAIHLSRIKRLVYGAKA 132
++Y + EPC MC A+ +RI+R+ YGA +
Sbjct: 281 DLYVTREPCVMCAMALVHARIQRVFYGAPS 310
>sp|Q561R2|ADAT3_RAT Probable inactive tRNA-specific adenosine deaminase-like protein 3
OS=Rattus norvegicus GN=Adat3 PE=2 SV=1
Length = 349
Score = 32.0 bits (71), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 21/30 (70%)
Query: 103 EIYASCEPCPMCFGAIHLSRIKRLVYGAKA 132
++Y + EPC MC A+ +RI+R+ YGA +
Sbjct: 281 DLYVTREPCVMCAMALVHARIQRVFYGAPS 310
>sp|P25539|RIBD_ECOLI Riboflavin biosynthesis protein RibD OS=Escherichia coli (strain
K12) GN=ribD PE=1 SV=1
Length = 367
Score = 31.6 bits (70), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 66/153 (43%), Gaps = 27/153 (17%)
Query: 30 RDHKFLTRAVEEAYKGVECGDGGP-FGAVVVRNDEVVVSCHNMVLKSTDPTAHAEVTAIR 88
+D ++ RA++ A +G P G V+V++ E+V ++ ++ +P HAEV A+R
Sbjct: 2 QDEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQ--RAGEP--HAEVHALR 57
Query: 89 EACKKLNQIELSDCEIYASCEPC------PMCFGAIHLSRIKRLVYGAKAEAAIAIGFDD 142
A +K Y + EPC P C A+ + + R+V +
Sbjct: 58 MAGEKAK-----GATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNP------- 105
Query: 143 FIADALRGTGFYQKAQLEIKKADGTGAAIAEQV 175
+ G G Y+ Q I + G + AEQ+
Sbjct: 106 ----QVAGRGLYRLQQAGIDVSHGLMMSEAEQL 134
>sp|Q9Z735|RIBD_CHLPN Riboflavin biosynthesis protein RibD OS=Chlamydia pneumoniae
GN=ribD PE=3 SV=1
Length = 376
Score = 30.8 bits (68), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 40/95 (42%), Gaps = 9/95 (9%)
Query: 34 FLTRAVEEAYKGVECGDGGPF-GAVVVRNDEVVVSCHNMVLKSTDPTAHAEVTAIREACK 92
F+ RA+E KG P+ G VVV+ + ++ + HAE AI+ A
Sbjct: 11 FMRRAIEIGEKGRITAPPNPWVGCVVVQENRIIGEGFHAYAGG----PHAEELAIQNASM 66
Query: 93 KLN----QIELSDCEIYASCEPCPMCFGAIHLSRI 123
++ + L C + SC PC +SR+
Sbjct: 67 PISGSDVYVSLEPCSHFGSCPPCANLLIKHKVSRV 101
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.134 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,880,196
Number of Sequences: 539616
Number of extensions: 2717485
Number of successful extensions: 6461
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 6403
Number of HSP's gapped (non-prelim): 61
length of query: 186
length of database: 191,569,459
effective HSP length: 111
effective length of query: 75
effective length of database: 131,672,083
effective search space: 9875406225
effective search space used: 9875406225
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)