Query 029890
Match_columns 186
No_of_seqs 147 out of 1400
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 05:16:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029890.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029890hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10860 tRNA-specific adenosi 100.0 9.4E-40 2E-44 259.6 17.2 151 29-183 11-161 (172)
2 COG0590 CumB Cytosine/adenosin 100.0 4.1E-39 9E-44 251.4 14.5 148 26-177 3-151 (152)
3 TIGR02571 ComEB ComE operon pr 100.0 5.5E-34 1.2E-38 222.2 14.1 123 27-165 2-139 (151)
4 PHA02588 cd deoxycytidylate de 100.0 9E-34 2E-38 224.6 14.4 123 30-167 2-156 (168)
5 cd01285 nucleoside_deaminase N 100.0 1.2E-32 2.5E-37 203.7 12.6 105 35-140 1-106 (109)
6 COG0117 RibD Pyrimidine deamin 100.0 3.8E-32 8.3E-37 207.6 13.4 134 28-179 3-145 (146)
7 cd01286 deoxycytidylate_deamin 100.0 7.9E-31 1.7E-35 200.1 12.7 101 31-135 1-122 (131)
8 PLN02807 diaminohydroxyphospho 100.0 2.2E-30 4.8E-35 228.0 15.7 135 28-180 29-172 (380)
9 PF00383 dCMP_cyt_deam_1: Cyti 100.0 8.5E-30 1.8E-34 185.0 12.3 100 29-130 2-102 (102)
10 PRK10786 ribD bifunctional dia 100.0 1.1E-29 2.4E-34 223.0 15.0 135 30-182 2-145 (367)
11 cd01284 Riboflavin_deaminase-r 100.0 5.2E-30 1.1E-34 191.5 10.9 94 35-137 1-103 (115)
12 KOG1018 Cytosine deaminase FCY 100.0 4.5E-29 9.7E-34 197.4 12.3 153 23-180 3-163 (169)
13 TIGR00326 eubact_ribD riboflav 100.0 7E-29 1.5E-33 216.1 13.5 128 35-180 1-137 (344)
14 cd00786 cytidine_deaminase-lik 100.0 4.7E-28 1E-32 175.3 10.9 92 35-130 1-95 (96)
15 COG2131 ComEB Deoxycytidylate 100.0 1.3E-27 2.8E-32 186.9 12.2 124 29-165 7-152 (164)
16 KOG3127 Deoxycytidylate deamin 99.8 4.2E-21 9.2E-26 155.4 9.6 127 23-163 59-206 (230)
17 cd01283 cytidine_deaminase Cyt 99.8 5.9E-19 1.3E-23 130.7 10.9 96 36-134 2-103 (112)
18 KOG2771 Subunit of tRNA-specif 99.7 1.7E-17 3.7E-22 142.0 8.3 133 30-169 166-338 (344)
19 TIGR01354 cyt_deam_tetra cytid 99.5 9.3E-13 2E-17 100.0 11.0 88 33-122 2-94 (127)
20 PF14439 Bd3614-deam: Bd3614-l 99.1 2.7E-10 5.8E-15 84.5 8.5 82 52-135 8-118 (136)
21 PRK06848 hypothetical protein; 99.1 1.9E-09 4.1E-14 83.1 11.9 96 27-124 3-110 (139)
22 COG0295 Cdd Cytidine deaminase 99.0 2.7E-09 5.9E-14 81.5 10.7 97 33-130 7-108 (134)
23 PRK05578 cytidine deaminase; V 99.0 6.9E-09 1.5E-13 79.2 10.9 90 32-122 4-97 (131)
24 PRK12411 cytidine deaminase; P 98.9 1.9E-08 4.2E-13 76.9 10.8 90 32-122 4-97 (132)
25 PRK08298 cytidine deaminase; V 98.9 3.7E-08 8E-13 75.7 10.6 95 31-128 4-106 (136)
26 PRK14719 bifunctional RNAse/5- 98.8 1.2E-08 2.6E-13 89.9 6.5 78 98-182 42-120 (360)
27 TIGR01355 cyt_deam_dimer cytid 98.8 7.5E-08 1.6E-12 82.1 10.5 89 31-122 22-112 (283)
28 KOG0833 Cytidine deaminase [Nu 98.7 4.5E-07 9.9E-12 71.6 11.3 99 29-129 19-123 (173)
29 PLN02402 cytidine deaminase 98.6 1.8E-07 4E-12 80.2 9.2 89 31-122 25-115 (303)
30 PLN02182 cytidine deaminase 98.5 1.4E-06 3.1E-11 75.7 10.8 92 31-123 45-144 (339)
31 PRK09027 cytidine deaminase; P 98.5 1.3E-06 2.8E-11 75.0 10.4 95 31-127 189-290 (295)
32 PRK09027 cytidine deaminase; P 98.3 4.4E-06 9.5E-11 71.7 10.4 84 36-122 55-140 (295)
33 TIGR01355 cyt_deam_dimer cytid 98.3 1.2E-05 2.7E-10 68.6 11.5 95 30-124 173-274 (283)
34 PLN02402 cytidine deaminase 97.6 0.00029 6.2E-09 60.7 8.6 63 31-93 192-254 (303)
35 PF08211 dCMP_cyt_deam_2: Cyti 96.9 0.003 6.5E-08 47.8 6.0 61 33-93 35-95 (124)
36 PF14437 MafB19-deam: MafB19-l 96.2 0.048 1E-06 42.3 8.9 53 79-132 80-136 (146)
37 PF14431 YwqJ-deaminase: YwqJ- 96.1 0.033 7.1E-07 42.0 7.3 46 78-123 65-125 (125)
38 PF08210 APOBEC_N: APOBEC-like 95.7 0.029 6.3E-07 45.3 5.9 107 53-166 25-147 (188)
39 PF14424 Toxin-deaminase: The 94.5 0.081 1.8E-06 40.4 5.0 45 78-122 72-119 (133)
40 PF14440 XOO_2897-deam: Xantho 87.1 0.57 1.2E-05 35.2 2.6 56 77-133 43-102 (118)
41 PF14441 OTT_1508_deam: OTT_15 86.4 1.9 4.2E-05 32.8 5.3 45 75-122 63-107 (142)
42 TIGR00355 purH phosphoribosyla 83.0 9.1 0.0002 35.6 8.9 67 55-128 413-480 (511)
43 PRK00881 purH bifunctional pho 82.9 16 0.00035 34.0 10.5 91 27-130 393-484 (513)
44 PLN02891 IMP cyclohydrolase 64.3 39 0.00083 31.8 8.0 63 55-127 450-515 (547)
45 cd06222 RnaseH RNase H (RNase 60.0 31 0.00067 23.6 5.4 54 52-107 15-69 (130)
46 PRK09710 lar restriction allev 57.0 2.8 6.1E-05 28.1 -0.5 21 105-125 3-23 (64)
47 PF14421 LmjF365940-deam: A di 56.9 54 0.0012 26.5 6.7 43 51-93 36-88 (193)
48 PF14427 Pput2613-deam: Pput_2 54.7 20 0.00044 26.6 3.7 40 79-122 48-89 (118)
49 PRK13907 rnhA ribonuclease H; 54.3 75 0.0016 23.0 6.9 53 53-109 18-71 (128)
50 PLN02182 cytidine deaminase 54.0 62 0.0013 28.7 7.2 62 31-93 201-263 (339)
51 PF05507 MAGP: Microfibril-ass 51.1 15 0.00032 28.0 2.5 30 102-131 91-120 (137)
52 PF02132 RecR: RecR protein; 49.9 29 0.00064 20.7 3.3 30 85-116 8-37 (41)
53 PF04244 DPRP: Deoxyribodipyri 47.2 93 0.002 25.7 6.9 76 100-185 61-160 (224)
54 PF14428 SCP1201-deam: SCP1.20 45.8 24 0.00053 26.9 3.0 40 78-121 67-110 (135)
55 PRK00611 putative disulfide ox 41.8 12 0.00026 28.7 0.8 11 106-116 31-41 (135)
56 PF13540 RCC1_2: Regulator of 39.8 52 0.0011 18.0 3.1 19 53-71 9-27 (30)
57 PRK04307 putative disulfide ox 36.9 14 0.00031 30.6 0.5 12 105-116 47-58 (218)
58 PF05582 Peptidase_U57: YabG p 36.8 2.8E+02 0.0061 24.0 8.9 97 29-135 112-239 (287)
59 PF05528 Coronavirus_5: Corona 36.6 22 0.00047 24.4 1.3 20 101-120 26-49 (82)
60 COG0328 RnhA Ribonuclease HI [ 35.1 1.5E+02 0.0033 23.2 6.0 63 48-115 13-79 (154)
61 KOG1783 Small nuclear ribonucl 34.6 75 0.0016 21.8 3.7 37 32-68 37-73 (77)
62 PRK03113 putative disulfide ox 33.6 19 0.00042 27.6 0.8 10 107-116 33-42 (139)
63 PF04805 Pox_E10: E10-like pro 32.5 33 0.00072 23.2 1.7 17 106-122 13-29 (70)
64 PF08098 ATX_III: Anemonia sul 32.3 17 0.00037 19.8 0.2 9 107-115 2-10 (27)
65 smart00552 ADEAMc tRNA-specifi 29.6 38 0.00082 30.2 2.1 38 80-117 71-133 (374)
66 PF01808 AICARFT_IMPCHas: AICA 29.6 1E+02 0.0022 27.0 4.7 31 55-90 285-315 (315)
67 PTZ00119 40S ribosomal protein 29.3 85 0.0019 27.1 4.0 52 112-184 178-230 (302)
68 TIGR00159 conserved hypothetic 28.9 58 0.0012 26.9 2.9 34 54-87 126-164 (211)
69 PRK03922 hypothetical protein; 28.7 50 0.0011 24.5 2.2 39 79-117 20-58 (113)
70 PF02137 A_deamin: Adenosine-d 26.4 56 0.0012 28.4 2.6 20 102-121 76-95 (343)
71 PF14354 Lar_restr_allev: Rest 25.2 19 0.00041 23.0 -0.5 12 107-118 2-13 (61)
72 TIGR02855 spore_yabG sporulati 24.6 4.6E+02 0.01 22.6 8.8 96 29-134 111-237 (283)
73 COG0138 PurH AICAR transformyl 24.6 5.9E+02 0.013 23.9 9.7 88 28-128 396-484 (515)
74 cd04679 Nudix_Hydrolase_20 Mem 24.5 2.6E+02 0.0056 19.7 6.3 42 54-95 5-56 (125)
75 KOG1682 Enoyl-CoA isomerase [L 24.5 94 0.002 26.0 3.3 47 36-84 61-110 (287)
76 PF02457 DisA_N: DisA bacteria 23.8 48 0.001 24.8 1.4 18 54-71 56-73 (122)
77 COG1624 Uncharacterized conser 23.6 77 0.0017 26.8 2.7 34 54-87 173-212 (247)
78 PF02600 DsbB: Disulfide bond 23.4 28 0.00061 26.6 0.1 11 106-116 29-39 (156)
79 PRK01749 disulfide bond format 23.1 38 0.00082 26.8 0.8 11 106-116 36-46 (176)
80 PRK02110 disulfide bond format 23.0 39 0.00085 26.6 0.9 11 106-116 36-46 (169)
81 PRK04388 disulfide bond format 22.6 39 0.00086 26.6 0.8 11 106-116 33-43 (172)
82 PF09930 DUF2162: Predicted tr 22.2 54 0.0012 27.2 1.6 25 97-121 94-118 (224)
83 PHA03005 sulfhydryl oxidase; P 22.1 62 0.0014 23.3 1.6 15 107-121 39-53 (96)
84 PRK00203 rnhA ribonuclease H; 21.1 3.3E+02 0.0071 20.4 5.7 57 54-116 21-78 (150)
85 PRK07106 5-aminoimidazole-4-ca 20.9 6.3E+02 0.014 22.9 9.2 32 55-91 230-261 (390)
86 smart00798 AICARFT_IMPCHas AIC 20.8 1.6E+02 0.0035 25.7 4.3 19 55-73 281-299 (311)
87 PF13953 PapC_C: PapC C-termin 20.4 36 0.00078 22.4 0.1 23 48-70 7-31 (68)
No 1
>PRK10860 tRNA-specific adenosine deaminase; Provisional
Probab=100.00 E-value=9.4e-40 Score=259.58 Aligned_cols=151 Identities=30% Similarity=0.470 Sum_probs=130.9
Q ss_pred hHHHHHHHHHHHHHhhcccCCCCCcEEEEEeeCCEEEEEEecCcccCCCCcccHHHHHHHHHHHHcCCccCCCceEEeeC
Q 029890 29 DRDHKFLTRAVEEAYKGVECGDGGPFGAVVVRNDEVVVSCHNMVLKSTDPTAHAEVTAIREACKKLNQIELSDCEIYASC 108 (186)
Q Consensus 29 ~~d~~~m~~A~~~A~~~~~~~~~~pVGavIv~~g~ii~~g~N~~~~~~~~~~HAE~~Ai~~a~~~~~~~~l~~~tly~T~ 108 (186)
.+|++||++|+++|+++...++ .|||||||++|+||++|+|+.....|++.|||++||++|.++++.+.+.|+|||||+
T Consensus 11 ~~~~~~m~~A~~~A~~a~~~g~-~pvGAVIV~~g~IIa~g~N~~~~~~d~~~HAEi~Ai~~a~~~~~~~~l~g~tlY~Tl 89 (172)
T PRK10860 11 FSHEYWMRHALTLAKRAWDERE-VPVGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQGGLVLQNYRLLDATLYVTL 89 (172)
T ss_pred ccHHHHHHHHHHHHHHhhccCC-CCEEEEEEeCCEEEEEeeCCCCCCCCCccCHHHHHHHHHHHhcCCCCcCCcEEEeeC
Confidence 3578899999999999998875 899999999999999999999888999999999999999999988899999999999
Q ss_pred CCcHHHHHHHHHhCCCEEEEEeecchhhhcCchhhHHhhhhccccccccceEEEeccchHHHHHHHHHHHhhccc
Q 029890 109 EPCPMCFGAIHLSRIKRLVYGAKAEAAIAIGFDDFIADALRGTGFYQKAQLEIKKADGTGAAIAEQVFEKTKAKF 183 (186)
Q Consensus 109 ePC~mCa~ai~~~gI~rVvy~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~v~v~~~~~~~~~l~~~~~~~~~~~f 183 (186)
|||+||+++|+|+||+||||+..+++.++.| +...+++...+.++..|..+.+++++..+++.||++++..+
T Consensus 90 EPC~MC~~aii~agI~rVvyg~~d~~~g~~g---~~~~~l~~~~~~~~i~v~~gv~~~e~~~ll~~ff~~~~~~~ 161 (172)
T PRK10860 90 EPCVMCAGAMVHSRIGRLVFGARDAKTGAAG---SLMDVLHHPGMNHRVEITEGVLADECAALLSDFFRMRRQEI 161 (172)
T ss_pred CCcHHHHHHHHHhCCCEEEEeecCCCCCCCC---cHHHHhhcccCCCCCEEEeCccHHHHHHHHHHHHHHHhhcc
Confidence 9999999999999999999999999887766 33444444444444444445788899999999999987544
No 2
>COG0590 CumB Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.1e-39 Score=251.40 Aligned_cols=148 Identities=36% Similarity=0.619 Sum_probs=134.6
Q ss_pred CCChHHHHHHHHHHHHHhhcccCCCCCcEEEEEee-CCEEEEEEecCcccCCCCcccHHHHHHHHHHHHcCCccCCCceE
Q 029890 26 AVKDRDHKFLTRAVEEAYKGVECGDGGPFGAVVVR-NDEVVVSCHNMVLKSTDPTAHAEVTAIREACKKLNQIELSDCEI 104 (186)
Q Consensus 26 ~~~~~d~~~m~~A~~~A~~~~~~~~~~pVGavIv~-~g~ii~~g~N~~~~~~~~~~HAE~~Ai~~a~~~~~~~~l~~~tl 104 (186)
...++|+.||++|+.+|+++...+ +.|||||||+ +|+||+.|+|+.....||+.|||++||+.|.+.++.+.+.+|||
T Consensus 3 ~~~~~~~~~m~~al~~A~~a~~~g-e~PvGaviV~~~~~ii~~~~N~~~~~~dptaHAEi~air~a~~~~~~~~l~~~tl 81 (152)
T COG0590 3 FLSEKDEDFMREALKEAKKAGDEG-EVPVGAVIVDADGEIIARGHNRREEDNDPTAHAEILAIRAAAETLGNYRLKDCTL 81 (152)
T ss_pred chhhhhHHHHHHHHHHHHHHHhcC-CCCEEEEEEcCCCCEEEEecCccccCCCccccHHHHHHHHHHHhhCCCCcCCcEE
Confidence 345789999999999999999666 4999999999 89999999999999999999999999999999999999999999
Q ss_pred EeeCCCcHHHHHHHHHhCCCEEEEEeecchhhhcCchhhHHhhhhccccccccceEEEeccchHHHHHHHHHH
Q 029890 105 YASCEPCPMCFGAIHLSRIKRLVYGAKAEAAIAIGFDDFIADALRGTGFYQKAQLEIKKADGTGAAIAEQVFE 177 (186)
Q Consensus 105 y~T~ePC~mCa~ai~~~gI~rVvy~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~v~v~~~~~~~~~l~~~~~~ 177 (186)
|+|+|||+||++||+|+||+||||+.++++.++.| +..+++.....+++.-|....+.+++..+++.||.
T Consensus 82 yvT~EPC~MCagAi~~ari~rvvyga~~~~~ga~g---~~~~i~~~~~~~~~~~v~~g~~~~e~~~~l~~f~~ 151 (152)
T COG0590 82 YVTLEPCPMCAGAIIWARIDRVVYGASDPKTGAIG---SLLDILKDPRLNHRVEVYGGILEEECSALLSEFFR 151 (152)
T ss_pred EEecCCHHHHHHHHHHhCCCeEEEecCCCCcCccC---cccccccCCCCCcCeEEecchhhHHHHHHHHHHHh
Confidence 99999999999999999999999999999999888 55666666667777777777899999999999886
No 3
>TIGR02571 ComEB ComE operon protein 2. This protein is found in the ComE operon for "late competence" as characterized in B. subtilis. Proteins in this family contain homology to a cytidine/deoxycytidine deaminase domain family (pfam00383), and may carry out this activity.
Probab=100.00 E-value=5.5e-34 Score=222.20 Aligned_cols=123 Identities=23% Similarity=0.332 Sum_probs=105.6
Q ss_pred CChHHHHHHHHHHHHHhhcccCCCCCcEEEEEeeCCEEEEEEecCcccCC---------------CCcccHHHHHHHHHH
Q 029890 27 VKDRDHKFLTRAVEEAYKGVECGDGGPFGAVVVRNDEVVVSCHNMVLKST---------------DPTAHAEVTAIREAC 91 (186)
Q Consensus 27 ~~~~d~~~m~~A~~~A~~~~~~~~~~pVGavIv~~g~ii~~g~N~~~~~~---------------~~~~HAE~~Ai~~a~ 91 (186)
.++||++||++|+.+|+++... + .|||||||++|+||++|+|+.+... +++.|||++||+++.
T Consensus 2 ~~~~d~~fM~~A~~~A~rs~~~-~-~~VGAVIV~d~~IIs~GyN~~~~g~~~~~~~~~~~~~~~~~~~~HAE~nAI~~a~ 79 (151)
T TIGR02571 2 RIKWDQYFMAQSHLLALRSTCT-R-LSVGATIVRDKRIIAGGYNGSVAGGVHCIDEGCYVVDGHCVRTIHAEMNALLQCA 79 (151)
T ss_pred CCcHHHHHHHHHHHHHHhcCCC-C-CCEEEEEEECCEEEEEEECCCCCCCCccccccccccccccCCccCHHHHHHHHHH
Confidence 3578999999999999998543 3 8999999999999999999987654 478999999999988
Q ss_pred HHcCCccCCCceEEeeCCCcHHHHHHHHHhCCCEEEEEeecchhhhcCchhhHHhhhhccccccccceEEEecc
Q 029890 92 KKLNQIELSDCEIYASCEPCPMCFGAIHLSRIKRLVYGAKAEAAIAIGFDDFIADALRGTGFYQKAQLEIKKAD 165 (186)
Q Consensus 92 ~~~~~~~l~~~tly~T~ePC~mCa~ai~~~gI~rVvy~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~v~v~~~~ 165 (186)
+. +..+.|++||||+|||+||+++|+++||+||||+..++... .+.++|+++||+|..++
T Consensus 80 ~~--~~~l~g~tlYvT~ePC~~Ca~ai~~agI~~Vvy~~~~~~~~------------~~~~~l~~~gi~v~~~~ 139 (151)
T TIGR02571 80 KF--GVSTEGAEIYVTHFPCLQCTKSIIQAGIKKIYYAQDYHNHP------------YAIELFEQAGVELKKVP 139 (151)
T ss_pred hc--CCCcCCcEEEEeCCCcHHHHHHHHHhCCCEEEEccCCCCcH------------HHHHHHHHCCCEEEEeC
Confidence 64 34789999999999999999999999999999997654321 24678999999999886
No 4
>PHA02588 cd deoxycytidylate deaminase; Provisional
Probab=100.00 E-value=9e-34 Score=224.57 Aligned_cols=123 Identities=25% Similarity=0.354 Sum_probs=104.8
Q ss_pred HHHHHHHHHHHHHhhcccCCCCCcEEEEEeeCCEEEEEEecCcccC--------------------------------CC
Q 029890 30 RDHKFLTRAVEEAYKGVECGDGGPFGAVVVRNDEVVVSCHNMVLKS--------------------------------TD 77 (186)
Q Consensus 30 ~d~~~m~~A~~~A~~~~~~~~~~pVGavIv~~g~ii~~g~N~~~~~--------------------------------~~ 77 (186)
.|++||++|+.+|+++... + .|||||||++|+||++|+|+++.. .+
T Consensus 2 ~d~~fM~~A~~~A~~s~~~-~-~~VGAVIV~~~~Iis~GyNg~p~g~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (168)
T PHA02588 2 KDSTYLQIAYLVSQESKCV-S-WKVGAVIEKNGRIISTGYNGTPAGGVNCCDHANEQGWLDDEGKLKKEHRPEHSAWSSK 79 (168)
T ss_pred CHHHHHHHHHHHHHhcCCC-C-CCEEEEEEECCEEEEEEeCCCCcCCcccccccccccccccccccccccccccccccCC
Confidence 4778999999999999653 3 899999999999999999998754 35
Q ss_pred CcccHHHHHHHHHHHHcCCccCCCceEEeeCCCcHHHHHHHHHhCCCEEEEEeecchhhhcCchhhHHhhhhcccccccc
Q 029890 78 PTAHAEVTAIREACKKLNQIELSDCEIYASCEPCPMCFGAIHLSRIKRLVYGAKAEAAIAIGFDDFIADALRGTGFYQKA 157 (186)
Q Consensus 78 ~~~HAE~~Ai~~a~~~~~~~~l~~~tly~T~ePC~mCa~ai~~~gI~rVvy~~~~~~~~~~g~~~~~~~~~~~~~~l~~~ 157 (186)
++.|||++||++|.++ +..+.|+|||||+|||+||+.+|+++||+||||+..++.... .+..+|+++
T Consensus 80 ~~~HAE~nAi~~a~~~--~~~~~g~tLYvTlePC~~Ca~aI~~~gI~rVvy~~~~~~~~~-----------~~~~~L~~~ 146 (168)
T PHA02588 80 NEIHAELNAILFAARN--GISIEGATMYVTASPCPDCAKAIAQSGIKKLVYCEKYDRNGP-----------GWDDILRKS 146 (168)
T ss_pred CCccHHHHHHHHHhhc--CCCCCCcEEEEeCCCcHHHHHHHHHhCCCEEEEeeccCCCcH-----------HHHHHHHHC
Confidence 6889999999999875 467899999999999999999999999999999987543211 246689999
Q ss_pred ceEEEeccch
Q 029890 158 QLEIKKADGT 167 (186)
Q Consensus 158 ~v~v~~~~~~ 167 (186)
||+|..++.+
T Consensus 147 Gi~v~~~~~~ 156 (168)
T PHA02588 147 GIEVIQIPKE 156 (168)
T ss_pred CCEEEEeCHH
Confidence 9999988754
No 5
>cd01285 nucleoside_deaminase Nucleoside deaminases include adenosine, guanine and cytosine deaminases. These enzymes are Zn dependent and catalyze the deamination of nucleosides. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a water molecule to form a hydroxide ion that performs a nucleophilic attack on the substrate. The functional enzyme is a homodimer. Cytosine deaminase catalyzes the deamination of cytosine to uracil and ammonia and is a member of the pyrimidine salvage pathway. Cytosine deaminase is found in bacteria and fungi but is not present in mammals; for this reason, the enzyme is currently of interest for antimicrobial drug design and gene therapy applications against tumors. Some members of this family are tRNA-specific adenosine deaminases that generate inosine at the first position of their anticodon (position 34) of specific tRNAs; this modification is thought to enlarge the codon recognition capacity during protei
Probab=100.00 E-value=1.2e-32 Score=203.68 Aligned_cols=105 Identities=48% Similarity=0.803 Sum_probs=98.0
Q ss_pred HHHHHHHHhhcccCCCCCcEEEEEeeC-CEEEEEEecCcccCCCCcccHHHHHHHHHHHHcCCccCCCceEEeeCCCcHH
Q 029890 35 LTRAVEEAYKGVECGDGGPFGAVVVRN-DEVVVSCHNMVLKSTDPTAHAEVTAIREACKKLNQIELSDCEIYASCEPCPM 113 (186)
Q Consensus 35 m~~A~~~A~~~~~~~~~~pVGavIv~~-g~ii~~g~N~~~~~~~~~~HAE~~Ai~~a~~~~~~~~l~~~tly~T~ePC~m 113 (186)
|++|+++|+++...++ .||||+||++ |+||+.|+|+.....+++.|||++||+++.++++.+.+.|++||+|+|||+|
T Consensus 1 m~~al~~a~~~~~~~~-~~vgaviv~~~~~ii~~g~n~~~~~~~~~~HAE~~ai~~~~~~~~~~~~~~~~ly~t~EPC~m 79 (109)
T cd01285 1 MRLAIELARKALAEGE-VPFGAVIVDDDGKVIARGHNRVEQDGDPTAHAEIVAIRNAARRLGSYLLSGCTLYTTLEPCPM 79 (109)
T ss_pred CHHHHHHHHHHHHcCC-CcEEEEEEeCCCEEEEEEeCCCCCCCCCcccHHHHHHHHHHHHhCCCccCCeEEEEeCCChHH
Confidence 6889999999988775 8999999985 9999999999998899999999999999999988889999999999999999
Q ss_pred HHHHHHHhCCCEEEEEeecchhhhcCc
Q 029890 114 CFGAIHLSRIKRLVYGAKAEAAIAIGF 140 (186)
Q Consensus 114 Ca~ai~~~gI~rVvy~~~~~~~~~~g~ 140 (186)
|+++|+|+||+||||+.++++.++.++
T Consensus 80 C~~ai~~~gi~~Vvy~~~~~~~g~~~~ 106 (109)
T cd01285 80 CAGALLWARIKRVVYGASDPKLGGIGF 106 (109)
T ss_pred HHHHHHHHCCCEEEEEecCCccccccc
Confidence 999999999999999999998776663
No 6
>COG0117 RibD Pyrimidine deaminase [Coenzyme metabolism]
Probab=100.00 E-value=3.8e-32 Score=207.60 Aligned_cols=134 Identities=25% Similarity=0.408 Sum_probs=115.9
Q ss_pred ChHHHHHHHHHHHHHhhcccCCCCCc-EEEEEeeCCEEEEEEecCcccCCCCcccHHHHHHHHHHHHcCCccCCCceEEe
Q 029890 28 KDRDHKFLTRAVEEAYKGVECGDGGP-FGAVVVRNDEVVVSCHNMVLKSTDPTAHAEVTAIREACKKLNQIELSDCEIYA 106 (186)
Q Consensus 28 ~~~d~~~m~~A~~~A~~~~~~~~~~p-VGavIv~~g~ii~~g~N~~~~~~~~~~HAE~~Ai~~a~~~~~~~~l~~~tly~ 106 (186)
+..|++||++|+++|++.....+++| ||||||++|+||+.|+.. ..+..|||+.||++|. ...+|+|+||
T Consensus 3 ~~~~~~~M~~Al~lA~k~~g~T~pNP~VG~VIV~~~~Ivg~G~h~----~aG~pHAEv~Al~~ag-----~~a~Gat~yV 73 (146)
T COG0117 3 SELDERYMERALELAEKGQGTTSPNPSVGCVIVKDGEIVGEGYHE----KAGGPHAEVCALRMAG-----EAARGATAYV 73 (146)
T ss_pred chHHHHHHHHHHHHHHhcCCcCCCCCceeEEEEECCEEEeeeecC----CCCCCcHHHHHHHHcC-----cccCCCEEEE
Confidence 45699999999999999888887777 999999999999999984 3578899999999984 4579999999
Q ss_pred eCCCc------HHHHHHHHHhCCCEEEEEeecchhhhcCchhhHHhhhhccccccccceE--EEeccchHHHHHHHHHHH
Q 029890 107 SCEPC------PMCFGAIHLSRIKRLVYGAKAEAAIAIGFDDFIADALRGTGFYQKAQLE--IKKADGTGAAIAEQVFEK 178 (186)
Q Consensus 107 T~ePC------~mCa~ai~~~gI~rVvy~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~v~--v~~~~~~~~~l~~~~~~~ 178 (186)
|+||| |+|+.+|+.+||+|||++..||+....| +|...|+++||+ +..++.++..+.+.|+.+
T Consensus 74 TLEPCsH~GrTPPC~~ali~agi~rVvva~~DPnp~Vag---------~G~~~L~~aGi~V~~gil~~e~~~l~~~f~~~ 144 (146)
T COG0117 74 TLEPCSHYGRTPPCADALIKAGVARVVVAMLDPNPLVAG---------GGLARLRAAGIEVEVGILEEEAEKLNEGFLKR 144 (146)
T ss_pred EecCcccCCCCcchHHHHHHhCCCEEEEEecCCCccccC---------chHHHHHHcCCeEEEehhHHHHHHHHHHHHcc
Confidence 99999 9999999999999999999999864444 567789999955 557888888888887765
Q ss_pred h
Q 029890 179 T 179 (186)
Q Consensus 179 ~ 179 (186)
.
T Consensus 145 ~ 145 (146)
T COG0117 145 M 145 (146)
T ss_pred c
Confidence 3
No 7
>cd01286 deoxycytidylate_deaminase Deoxycytidylate deaminase domain. Deoxycytidylate deaminase catalyzes the deamination of dCMP to dUMP, providing the nucleotide substrate for thymidylate synthase. The enzyme binds Zn++, which is required for catalytic activity. The activity of the enzyme is allosterically regulated by the ratio of dCTP to dTTP not only in eukaryotic cells but also in T-even phage-infected Escherichia coli, with dCTP acting as an activator and dTTP as an inhibitor.
Probab=99.97 E-value=7.9e-31 Score=200.10 Aligned_cols=101 Identities=26% Similarity=0.365 Sum_probs=90.6
Q ss_pred HHHHHHHHHHHHhhcccCCCCCcEEEEEeeCCEEEEEEecCccc---------------------CCCCcccHHHHHHHH
Q 029890 31 DHKFLTRAVEEAYKGVECGDGGPFGAVVVRNDEVVVSCHNMVLK---------------------STDPTAHAEVTAIRE 89 (186)
Q Consensus 31 d~~~m~~A~~~A~~~~~~~~~~pVGavIv~~g~ii~~g~N~~~~---------------------~~~~~~HAE~~Ai~~ 89 (186)
|+.||++|+++|+++... + .|||||||++|+||++|+|+++. ..+++.|||++||++
T Consensus 1 d~~~m~~A~~~A~~s~~~-~-~~VGAViv~~~~iI~~G~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~HAE~~Ai~~ 78 (131)
T cd01286 1 DEYFMAIARLAALRSTCP-R-RQVGAVIVKDKRIISTGYNGSPSGLPHCAEVGCERDDLPSGEDQKCCRTVHAEQNAILQ 78 (131)
T ss_pred CHHHHHHHHHHHHHcCCC-C-CCEEEEEEECCEEEEEeeCCCCCCCCCcccccccccccccccccccCCCCCHHHHHHHH
Confidence 457999999999998754 3 89999999999999999999863 457899999999999
Q ss_pred HHHHcCCccCCCceEEeeCCCcHHHHHHHHHhCCCEEEEEeecchh
Q 029890 90 ACKKLNQIELSDCEIYASCEPCPMCFGAIHLSRIKRLVYGAKAEAA 135 (186)
Q Consensus 90 a~~~~~~~~l~~~tly~T~ePC~mCa~ai~~~gI~rVvy~~~~~~~ 135 (186)
+.++ +..+.++|||||+|||+||+.+|+++||+||||+.+++..
T Consensus 79 a~~~--~~~~~~~tLyvT~ePC~~C~~ai~~~gI~~Vvy~~~~~~~ 122 (131)
T cd01286 79 AARH--GVSLEGATLYVTLFPCIECAKLIIQAGIKKVVYAEPYDDD 122 (131)
T ss_pred HhHc--CCCcCCeEEEEecCcHHHHHHHHHHhCCCEEEEeeccCcc
Confidence 9876 5678999999999999999999999999999999988753
No 8
>PLN02807 diaminohydroxyphosphoribosylaminopyrimidine deaminase
Probab=99.97 E-value=2.2e-30 Score=228.00 Aligned_cols=135 Identities=27% Similarity=0.453 Sum_probs=116.2
Q ss_pred ChHHHHHHHHHHHHHhhcccCCCCCc-EEEEEeeCCEEEEEEecCcccCCCCcccHHHHHHHHHHHHcCCccCCCceEEe
Q 029890 28 KDRDHKFLTRAVEEAYKGVECGDGGP-FGAVVVRNDEVVVSCHNMVLKSTDPTAHAEVTAIREACKKLNQIELSDCEIYA 106 (186)
Q Consensus 28 ~~~d~~~m~~A~~~A~~~~~~~~~~p-VGavIv~~g~ii~~g~N~~~~~~~~~~HAE~~Ai~~a~~~~~~~~l~~~tly~ 106 (186)
+.+|++||++|+++|+++...+.++| ||||||++|+||+.|+|.. .+..|||++||++|.++ +.|+||||
T Consensus 29 ~~~d~~~M~~Al~lA~~~~~~~~~np~VGaViV~~g~Ii~~g~n~~----~g~~HAEi~Ai~~a~~~-----~~g~tlyv 99 (380)
T PLN02807 29 GDDDSFYMRRCVELARKAIGCTSPNPMVGCVIVKDGRIVGEGFHPK----AGQPHAEVFALRDAGDL-----AENATAYV 99 (380)
T ss_pred CchHHHHHHHHHHHHHhhcccCCCCCCEEEEEEECCEEEEEEeCCC----CCCcCHHHHHHHHhhhh-----cCCcEEEE
Confidence 46688999999999999987776556 9999999999999999965 35689999999999765 57999999
Q ss_pred eCCCc------HHHHHHHHHhCCCEEEEEeecchhhhcCchhhHHhhhhccccccccceEEE--eccchHHHHHHHHHHH
Q 029890 107 SCEPC------PMCFGAIHLSRIKRLVYGAKAEAAIAIGFDDFIADALRGTGFYQKAQLEIK--KADGTGAAIAEQVFEK 178 (186)
Q Consensus 107 T~ePC------~mCa~ai~~~gI~rVvy~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~v~v~--~~~~~~~~l~~~~~~~ 178 (186)
|+||| |||+.+|+++||+||||+..||+.+..| ++..+|++.||+|. .++++|..+++.||.+
T Consensus 100 TLEPC~h~Gktp~C~~aii~agI~rVv~g~~dp~~~~~g---------~g~~~l~~~gi~V~~g~~~~e~~~l~~~f~~~ 170 (380)
T PLN02807 100 SLEPCNHYGRTPPCTEALIKAKVKRVVVGMVDPNPIVAS---------KGIERLRDAGIEVTVGVEEELCRKLNEAFIHR 170 (380)
T ss_pred EcCCCcCCCCChHHHHHHHHhCCCEEEEEecCCCccccc---------hHHHHHHhCCCEEEeCcCHHHHHHHHHHHHHH
Confidence 99999 8999999999999999999999875544 24566788899885 4677899999999987
Q ss_pred hh
Q 029890 179 TK 180 (186)
Q Consensus 179 ~~ 180 (186)
..
T Consensus 171 ~~ 172 (380)
T PLN02807 171 ML 172 (380)
T ss_pred Hh
Confidence 65
No 9
>PF00383 dCMP_cyt_deam_1: Cytidine and deoxycytidylate deaminase zinc-binding region; InterPro: IPR002125 Cytidine deaminase (3.5.4.5 from EC) (cytidine aminohydrolase) catalyzes the hydrolysis of cytidine into uridine and ammonia while deoxycytidylate deaminase (3.5.4.12 from EC) (dCMP deaminase) hydrolyzes dCMP into dUMP. Both enzymes are known to bind zinc and to require it for their catalytic activity [, ]. These two enzymes do not share any sequence similarity with the exception of a region that contains three conserved histidine and cysteine residues which are thought to be involved in the binding of the catalytic zinc ion. Such a region is also found in other proteins [, ]: Yeast cytosine deaminase (3.5.4.1 from EC) (gene FCY1) which transforms cytosine into uracil. Mammalian apolipoprotein B mRNA editing protein, responsible for the postranscriptional editing of a CAA codon into a UAA (stop) codon in the APOB mRNA. Riboflavin biosynthesis protein ribG, which converts 2,5-diamino-6-(ribosylamino)-4(3H)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1H,3H)-pyrimidinedione 5'-phosphate. Bacillus cereus blasticidin-S deaminase (3.5.4.23 from EC), which catalyzes the deamination of the cytosine moiety of the antibiotics blasticidin S, cytomycin and acetylblasticidin S. Bacillus subtilis protein comEB. This protein is required for the binding and uptake of transforming DNA. B. subtilis hypothetical protein yaaJ. Escherichia coli hypothetical protein yfhC. Yeast hypothetical protein YJL035c. ; GO: 0008270 zinc ion binding, 0016787 hydrolase activity; PDB: 3MPZ_C 3R2N_C 1WKQ_A 1TIY_B 2B3J_C 2O7P_B 2OBC_A 2G6V_B 2D30_B 2D5N_B ....
Probab=99.97 E-value=8.5e-30 Score=184.99 Aligned_cols=100 Identities=38% Similarity=0.669 Sum_probs=89.3
Q ss_pred hHHHHHHHHHHHHHhhcccCCCCCcEEEEEee-CCEEEEEEecCcccCCCCcccHHHHHHHHHHHHcCCccCCCceEEee
Q 029890 29 DRDHKFLTRAVEEAYKGVECGDGGPFGAVVVR-NDEVVVSCHNMVLKSTDPTAHAEVTAIREACKKLNQIELSDCEIYAS 107 (186)
Q Consensus 29 ~~d~~~m~~A~~~A~~~~~~~~~~pVGavIv~-~g~ii~~g~N~~~~~~~~~~HAE~~Ai~~a~~~~~~~~l~~~tly~T 107 (186)
++|++||++|+++|+++...+. .|||||||+ +|++|+.|+|......+++.|||++||.++.++ +...+.|++||+|
T Consensus 2 ~~~~~~m~~a~~~a~~s~~~~~-~~vgaviv~~~~~~i~~g~n~~~~~~~~~~HAE~~Ai~~~~~~-~~~~~~~~~lyvt 79 (102)
T PF00383_consen 2 EWDEEFMRIAIELAKRSRPCGN-FPVGAVIVDPDGKIIATGYNGEPPGKNPTIHAEMNAIRKAARN-GGSSLKGCTLYVT 79 (102)
T ss_dssp CHHHHHHHHHHHHHHTHBTTTS-SSEEEEEEETTTEEEEEEESBHHSTTGGTB-HHHHHHHHHHHT-TSSGETTEEEEEE
T ss_pred HHHHHHHHHHHHHHHhccccCC-CCEEEEEEeccCccEEEEeeeeeeeccccccchhhhhhhhhhh-ccccccCcccccC
Confidence 4799999999999999985553 889999999 899999999999988889999999999999988 5667899999999
Q ss_pred CCCcHHHHHHHHHhCCCEEEEEe
Q 029890 108 CEPCPMCFGAIHLSRIKRLVYGA 130 (186)
Q Consensus 108 ~ePC~mCa~ai~~~gI~rVvy~~ 130 (186)
+|||+||+++|+++||+||||+.
T Consensus 80 ~ePC~~C~~ai~~~gi~~vvy~~ 102 (102)
T PF00383_consen 80 LEPCGMCAMAIVHAGIKRVVYGT 102 (102)
T ss_dssp E--BHHHHHHHHHHTSSEEEEEE
T ss_pred CCCHHHHHHHHHHHCcCeEEEeC
Confidence 99999999999999999999974
No 10
>PRK10786 ribD bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase; Provisional
Probab=99.97 E-value=1.1e-29 Score=223.05 Aligned_cols=135 Identities=24% Similarity=0.379 Sum_probs=114.0
Q ss_pred HHHHHHHHHHHHHhhcccCCCC-CcEEEEEeeCCEEEEEEecCcccCCCCcccHHHHHHHHHHHHcCCccCCCceEEeeC
Q 029890 30 RDHKFLTRAVEEAYKGVECGDG-GPFGAVVVRNDEVVVSCHNMVLKSTDPTAHAEVTAIREACKKLNQIELSDCEIYASC 108 (186)
Q Consensus 30 ~d~~~m~~A~~~A~~~~~~~~~-~pVGavIv~~g~ii~~g~N~~~~~~~~~~HAE~~Ai~~a~~~~~~~~l~~~tly~T~ 108 (186)
.|++||++|+++|+++...+.+ .|||||||++|+||++|+|... +..|||++||++|.++ +.|||||||+
T Consensus 2 ~d~~~m~~A~~~A~~~~~~~~~~~~vGaviv~~g~ii~~g~n~~~----g~~HAE~~ai~~a~~~-----~~g~tlyvTl 72 (367)
T PRK10786 2 QDEFYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRA----GEPHAEVHALRMAGEK-----AKGATAYVTL 72 (367)
T ss_pred CHHHHHHHHHHHHHhcCcCCCCCCCEEEEEEeCCEEEEEEeCCCC----CCCCHHHHHHHHHhhh-----cCCCEEEEec
Confidence 3678999999999998654322 5699999999999999999653 4689999999999875 4899999999
Q ss_pred CCc------HHHHHHHHHhCCCEEEEEeecchhhhcCchhhHHhhhhccccccccceEEE--eccchHHHHHHHHHHHhh
Q 029890 109 EPC------PMCFGAIHLSRIKRLVYGAKAEAAIAIGFDDFIADALRGTGFYQKAQLEIK--KADGTGAAIAEQVFEKTK 180 (186)
Q Consensus 109 ePC------~mCa~ai~~~gI~rVvy~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~v~v~--~~~~~~~~l~~~~~~~~~ 180 (186)
||| +||+.+|+++||+||||+..+|+.+..| ++...|++.||+|. .+++++..+++.||.+.+
T Consensus 73 EPC~~~g~t~mC~~aii~agI~rVv~~~~dp~~~~~g---------~~~~~l~~~gi~v~~~~~~~e~~~l~~~f~~~~~ 143 (367)
T PRK10786 73 EPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAG---------RGLYRLQQAGIDVSHGLMMSEAEALNKGFLKRMR 143 (367)
T ss_pred CCccCCCCChHHHHHHHHhCCCEEEEecCCCCcccCc---------hHHHHHhcCCcEEEcCCcHHHHHHHHHHHHHHhh
Confidence 999 8999999999999999999999876544 23455778899886 578889999999999876
Q ss_pred cc
Q 029890 181 AK 182 (186)
Q Consensus 181 ~~ 182 (186)
.+
T Consensus 144 ~~ 145 (367)
T PRK10786 144 TG 145 (367)
T ss_pred cc
Confidence 43
No 11
>cd01284 Riboflavin_deaminase-reductase Riboflavin-specific deaminase. Riboflavin biosynthesis protein RibD (Diaminohydroxyphosphoribosylaminopyrimidine deaminase) catalyzes the deamination of 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate, which is an intermediate step in the biosynthesis of riboflavin.The ribG gene of Bacillus subtilis and the ribD gene of E. coli are bifunctional and contain this deaminase domain and a reductase domain which catalyzes the subsequent reduction of the ribosyl side chain.
Probab=99.97 E-value=5.2e-30 Score=191.54 Aligned_cols=94 Identities=34% Similarity=0.523 Sum_probs=84.9
Q ss_pred HHHHHHHHhhc--ccCCCCCcEEEEEeeC-CEEEEEEecCcccCCCCcccHHHHHHHHHHHHcCCccCCCceEEeeCCCc
Q 029890 35 LTRAVEEAYKG--VECGDGGPFGAVVVRN-DEVVVSCHNMVLKSTDPTAHAEVTAIREACKKLNQIELSDCEIYASCEPC 111 (186)
Q Consensus 35 m~~A~~~A~~~--~~~~~~~pVGavIv~~-g~ii~~g~N~~~~~~~~~~HAE~~Ai~~a~~~~~~~~l~~~tly~T~ePC 111 (186)
|++|+++|+++ ...++ .|||||||++ |+||++|+|+.. ++.|||++||+++.++ .+.|+|||+|+|||
T Consensus 1 m~~al~~A~~~~~~~~~~-~pvGaviv~~~g~iv~~g~n~~~----~~~HAE~~ai~~a~~~----~l~g~tly~TlEPC 71 (115)
T cd01284 1 MRRALELAEKGRGLTSPN-PPVGCVIVDDDGEIVGEGYHRKA----GGPHAEVNALASAGEK----LARGATLYVTLEPC 71 (115)
T ss_pred CHHHHHHHHhcccccCCC-CCEEEEEEeCCCeEEEEecCCCC----CcccHHHHHHHHHhhc----CCCCeEEEEeCCCC
Confidence 68999999999 66554 8999999985 999999999864 8999999999999875 67999999999999
Q ss_pred ------HHHHHHHHHhCCCEEEEEeecchhhh
Q 029890 112 ------PMCFGAIHLSRIKRLVYGAKAEAAIA 137 (186)
Q Consensus 112 ------~mCa~ai~~~gI~rVvy~~~~~~~~~ 137 (186)
+||+++|+|+||+||||+..+++.+.
T Consensus 72 ~~~~~~~mC~~ai~~~gi~~Vv~g~~~~~~~~ 103 (115)
T cd01284 72 SHHGKTPPCVDAIIEAGIKRVVVGVRDPNPLV 103 (115)
T ss_pred CCCCCchHHHHHHHHHCcCEEEEEecCCCccc
Confidence 89999999999999999999997643
No 12
>KOG1018 consensus Cytosine deaminase FCY1 and related enzymes [Nucleotide transport and metabolism]
Probab=99.96 E-value=4.5e-29 Score=197.39 Aligned_cols=153 Identities=41% Similarity=0.653 Sum_probs=124.6
Q ss_pred CCCCCChHHHHHHHHHHHHHhhcccCCCCCcEEEEEee-CCEEEEEEecCcccCCCCcccHHHHHHHH---HHHHcCCcc
Q 029890 23 HQEAVKDRDHKFLTRAVEEAYKGVECGDGGPFGAVVVR-NDEVVVSCHNMVLKSTDPTAHAEVTAIRE---ACKKLNQIE 98 (186)
Q Consensus 23 ~~~~~~~~d~~~m~~A~~~A~~~~~~~~~~pVGavIv~-~g~ii~~g~N~~~~~~~~~~HAE~~Ai~~---a~~~~~~~~ 98 (186)
+....+++|..||..|+++|+++...+.+.|||||+|+ +|+|+++|+|.++...+++.|||+.||++ ...+++.+.
T Consensus 3 ~~~~~~~~~~~~m~~a~eea~ka~d~~~~~pvg~vlV~~~g~v~a~g~n~~~~~~d~t~HaE~~~I~~~~~~~~~~~~~~ 82 (169)
T KOG1018|consen 3 SIRELSDHDIAFMVEAVEEAKKALDEGDEVPVGAVLVHMDGKVLASGGNMVNEKKDPTAHAEVIAIREEEVMCKSLRTID 82 (169)
T ss_pred cchhcccccHHHHHHHHHHHHhhccCCCCCceEEEEEeCCCeEEecccceecccCCcchhhHHHHHhhHHHHhhhcCcee
Confidence 34566788999999999999999999955999999999 99999999999999999999999999999 777888899
Q ss_pred CCCceEEeeCCCcHHHHHHHHHhCCCEEEEEeecchhhhcCchhhHHhhhhccccccccceEEEeccch----HHHHHHH
Q 029890 99 LSDCEIYASCEPCPMCFGAIHLSRIKRLVYGAKAEAAIAIGFDDFIADALRGTGFYQKAQLEIKKADGT----GAAIAEQ 174 (186)
Q Consensus 99 l~~~tly~T~ePC~mCa~ai~~~gI~rVvy~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~v~v~~~~~~----~~~l~~~ 174 (186)
++++|+|||+|||+||++||.++||++|||+...++.+..|+..... ...++..+.++...++. ...++..
T Consensus 83 ls~~tlyvt~ePc~mC~gal~~~gv~~vv~G~~ne~~~~~~~~~~~~-----~~~l~~~~~~~~~~~~i~~~~~~~~~~~ 157 (169)
T KOG1018|consen 83 LSETTLYVTCEPCPMCAGALAQSGVKRVVFGASNERFGGIGFVLRGN-----KDFLKRLGASVISRDGIEKKEAQKLLIA 157 (169)
T ss_pred ccCCEEEEEecccHHHHHHHHHcCCCEEEEecccccccccceeeeeh-----hhhhccCCcceEeccchhhHHhhhHHHh
Confidence 99999999999999999999999999999999999998877543111 11234445555543333 2234666
Q ss_pred HHHHhh
Q 029890 175 VFEKTK 180 (186)
Q Consensus 175 ~~~~~~ 180 (186)
|+.+++
T Consensus 158 f~~~~n 163 (169)
T KOG1018|consen 158 FYVRDN 163 (169)
T ss_pred hccccc
Confidence 666554
No 13
>TIGR00326 eubact_ribD riboflavin biosynthesis protein RibD. This model describes the ribD protein as found in Escherichia coli. The N-terminal domain includes the conserved zinc-binding site region captured in the model dCMP_cyt_deam and shared by proteins such as cytosine deaminase, mammalian apolipoprotein B mRNA editing protein, blasticidin-S deaminase, and Bacillus subtilis competence protein comEB. The C-terminal domain is homologous to the full length of yeast HTP reductase, a protein required for riboflavin biosynthesis. A number of archaeal proteins believed related to riboflavin biosynthesis contain only this C-terminal domain and are not found as full-length matches to this model.
Probab=99.96 E-value=7e-29 Score=216.12 Aligned_cols=128 Identities=27% Similarity=0.426 Sum_probs=110.0
Q ss_pred HHHHHHHHhhcccCCCC-CcEEEEEeeCCEEEEEEecCcccCCCCcccHHHHHHHHHHHHcCCccCCCceEEeeCCCc--
Q 029890 35 LTRAVEEAYKGVECGDG-GPFGAVVVRNDEVVVSCHNMVLKSTDPTAHAEVTAIREACKKLNQIELSDCEIYASCEPC-- 111 (186)
Q Consensus 35 m~~A~~~A~~~~~~~~~-~pVGavIv~~g~ii~~g~N~~~~~~~~~~HAE~~Ai~~a~~~~~~~~l~~~tly~T~ePC-- 111 (186)
|++|+++|+++...+.+ .|||||||++|+||++|+|+. .++.|||++||++|.++ ++|||||||+|||
T Consensus 1 m~~a~~~a~~~~~~~~~~~~vGaviv~~~~ii~~g~n~~----~~~~HAE~~ai~~a~~~-----~~g~tlyvtlEPC~~ 71 (344)
T TIGR00326 1 MNRALDLAKKGQGTTHPNPLVGCVIVKNGEIVGEGAHQK----AGEPHAEVHALRQAGEN-----AKGATAYVTLEPCSH 71 (344)
T ss_pred CHHHHHHHHhcCCCCCCCCCEEEEEEeCCEEEEEeeCCC----CCCCCHHHHHHHHhccc-----cCCcEEEEeCCCCCC
Confidence 78999999999876543 579999999999999999974 46899999999999775 4899999999999
Q ss_pred ----HHHHHHHHHhCCCEEEEEeecchhhhcCchhhHHhhhhccccccccceEEE--eccchHHHHHHHHHHHhh
Q 029890 112 ----PMCFGAIHLSRIKRLVYGAKAEAAIAIGFDDFIADALRGTGFYQKAQLEIK--KADGTGAAIAEQVFEKTK 180 (186)
Q Consensus 112 ----~mCa~ai~~~gI~rVvy~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~v~v~--~~~~~~~~l~~~~~~~~~ 180 (186)
+||+.+|+++||+||||+..+|+.+..| ++..++++.||+|. .+.++|..+++.||.+.+
T Consensus 72 ~g~~~~C~~ai~~~gi~~vv~~~~d~~~~~~~---------~~~~~l~~~gi~v~~~~~~~e~~~l~~~f~~~~~ 137 (344)
T TIGR00326 72 QGRTPPCAEAIIEAGIKKVVVSMQDPNPLVAG---------RGAERLKQAGIEVTFGILKEEAERLNKGFLKRMR 137 (344)
T ss_pred CCCCcHHHHHHHHcCCCEEEEEeCCCCccccc---------hHHHHHhcCCcEEEeCCCHHHHHHHHHHHHHhhh
Confidence 8999999999999999999998765544 23456778888875 477889999999998765
No 14
>cd00786 cytidine_deaminase-like Cytidine and deoxycytidylate deaminase zinc-binding region. The family contains cytidine deaminases, nucleoside deaminases, deoxycytidylate deaminases and riboflavin deaminases. Also included are the apoBec family of mRNA editing enzymes. All members are Zn dependent. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a water molecule to form a hydroxide ion that performs a nucleophilic attack on the substrate.
Probab=99.95 E-value=4.7e-28 Score=175.33 Aligned_cols=92 Identities=24% Similarity=0.223 Sum_probs=83.6
Q ss_pred HHHHHHHHhhcc-cCCCCCcEEEEEeeC--CEEEEEEecCcccCCCCcccHHHHHHHHHHHHcCCccCCCceEEeeCCCc
Q 029890 35 LTRAVEEAYKGV-ECGDGGPFGAVVVRN--DEVVVSCHNMVLKSTDPTAHAEVTAIREACKKLNQIELSDCEIYASCEPC 111 (186)
Q Consensus 35 m~~A~~~A~~~~-~~~~~~pVGavIv~~--g~ii~~g~N~~~~~~~~~~HAE~~Ai~~a~~~~~~~~l~~~tly~T~ePC 111 (186)
|+.|+++|+++. ..+ ..||||+||++ |++++.|+|.....++++.|||++||+++.++. .+++++||+|+|||
T Consensus 1 m~~a~~~a~~a~~~~~-~~pVGaviv~~~~g~ii~~g~n~~~~~~~~~~HAE~~ai~~a~~~~---~~~~~tly~tlePC 76 (96)
T cd00786 1 MTEALKAADLGYAKES-NFQVGACLVNKKDGGKVGRGCNIENAAYSMCNHAERTALFNAGSEG---DTKGQMLYVALSPC 76 (96)
T ss_pred CHHHHHHHHhccCCCC-CCCEEEEEEEeCCCCeEeeeEeccCCCCCCeeCHHHHHHHHHHHcC---CCCceEEEEECCCh
Confidence 688999999984 444 48999999985 999999999999889999999999999998764 27999999999999
Q ss_pred HHHHHHHHHhCCCEEEEEe
Q 029890 112 PMCFGAIHLSRIKRLVYGA 130 (186)
Q Consensus 112 ~mCa~ai~~~gI~rVvy~~ 130 (186)
.||+++|+|+||++|||+.
T Consensus 77 ~mC~~ai~~~gi~~Vv~~~ 95 (96)
T cd00786 77 GACAQLIIELGIKDVIVVL 95 (96)
T ss_pred HHHHHHHHHhCCCCEEEee
Confidence 9999999999999999985
No 15
>COG2131 ComEB Deoxycytidylate deaminase [Nucleotide transport and metabolism]
Probab=99.95 E-value=1.3e-27 Score=186.85 Aligned_cols=124 Identities=23% Similarity=0.319 Sum_probs=106.4
Q ss_pred hHHHHHHHHHHHHHhhcccCCCCCcEEEEEeeCCEEEEEEecCcccCCC----------------------CcccHHHHH
Q 029890 29 DRDHKFLTRAVEEAYKGVECGDGGPFGAVVVRNDEVVVSCHNMVLKSTD----------------------PTAHAEVTA 86 (186)
Q Consensus 29 ~~d~~~m~~A~~~A~~~~~~~~~~pVGavIv~~g~ii~~g~N~~~~~~~----------------------~~~HAE~~A 86 (186)
+||++||+.|...|.++.... ..||||||++++||++|||+.+...+ .+.|||+||
T Consensus 7 ~wdeyfm~~A~l~a~Rstc~r--~~VGAvIvkd~rIiatGYNG~p~g~~~c~~~g~~~~~~~~~~~~~~~~r~vHAE~NA 84 (164)
T COG2131 7 MWDEYFMAIAELVALRSTCPR--RQVGAVIVKDGRIIATGYNGAPSGEDHCIDRGCLRDKVVFVTTCGHCCRTLHAEQNA 84 (164)
T ss_pred HHHHHHHHHHHHHHHHccCcc--cceeEEEEeCCeEEEeecCCCCcccCCcCccCceecccccccchhHHHHHHHHHHHH
Confidence 699999999999999987654 78999999999999999999876432 146999999
Q ss_pred HHHHHHHcCCccCCCceEEeeCCCcHHHHHHHHHhCCCEEEEEeecchhhhcCchhhHHhhhhccccccccceEEEecc
Q 029890 87 IREACKKLNQIELSDCEIYASCEPCPMCFGAIHLSRIKRLVYGAKAEAAIAIGFDDFIADALRGTGFYQKAQLEIKKAD 165 (186)
Q Consensus 87 i~~a~~~~~~~~l~~~tly~T~ePC~mCa~ai~~~gI~rVvy~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~v~v~~~~ 165 (186)
|.+|++. +..+.|+++|+|+.||.+|++.|+++||++|||..++++.. ..-....+++++||++.+++
T Consensus 85 il~aa~~--g~~~~~atlYvt~~PC~~Cak~Ii~aGIk~Vvy~~~Y~~~~---------~~~~s~~l~~~agv~~~~~~ 152 (164)
T COG2131 85 ILQAARH--GVGLEGATLYVTHFPCSNCAKLIIQAGIKEVVYAEPYPTET---------VAPYSQELLEEAGVKVRQFP 152 (164)
T ss_pred HHHHHhc--CCCCCCcEEEEEecccHHHHHHHHHhCceEEEeecCCCcch---------hhHHHHHHHHhCCceEEecc
Confidence 9999987 56678999999999999999999999999999999998653 11234567899999998865
No 16
>KOG3127 consensus Deoxycytidylate deaminase [Nucleotide transport and metabolism]
Probab=99.85 E-value=4.2e-21 Score=155.39 Aligned_cols=127 Identities=19% Similarity=0.269 Sum_probs=100.1
Q ss_pred CCCCCChHHHHHHHHHHHHHhhcccCCCCCcEEEEEee-CCEEEEEEecCcccCCC--------------------Cccc
Q 029890 23 HQEAVKDRDHKFLTRAVEEAYKGVECGDGGPFGAVVVR-NDEVVVSCHNMVLKSTD--------------------PTAH 81 (186)
Q Consensus 23 ~~~~~~~~d~~~m~~A~~~A~~~~~~~~~~pVGavIv~-~g~ii~~g~N~~~~~~~--------------------~~~H 81 (186)
.+....+||.+||..|...|+++.+.. ..||||||+ ++.||++|||+++.+.+ -+.|
T Consensus 59 k~~~~lswd~yFM~iA~LsA~RSkDpn--tqVGaCiv~~~n~iVg~GYNgfP~gc~~~vfp~~~~~~~~~~~~k~~yv~H 136 (230)
T KOG3127|consen 59 KRNGYLSWDDYFMAIAFLSAKRSKDPN--TQVGACIVDRENRIVGTGYNGFPRGCSDDVFPWCKAALSTNLDLKYCYVVH 136 (230)
T ss_pred ccccCccHHHHHHHHHHHHHHhccCcc--cceeeEEEcCCCEEEEeccCCCcCCCCCCCCcccccccccCCCcceEEEee
Confidence 456778999999999999999998764 789988887 89999999999886421 1569
Q ss_pred HHHHHHHHHHHHcCCccCCCceEEeeCCCcHHHHHHHHHhCCCEEEEEeecchhhhcCchhhHHhhhhccccccccceEE
Q 029890 82 AEVTAIREACKKLNQIELSDCEIYASCEPCPMCFGAIHLSRIKRLVYGAKAEAAIAIGFDDFIADALRGTGFYQKAQLEI 161 (186)
Q Consensus 82 AE~~Ai~~a~~~~~~~~l~~~tly~T~ePC~mCa~ai~~~gI~rVvy~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~v~v 161 (186)
||+|||.++.. ..+.++++|+|+-||..|+..|+++||+.|||+..+-... +....+..++..+||..
T Consensus 137 AE~NAi~~~~~----~~~~~~~lYvtl~PC~~Ca~liiq~GIkeV~~~~~~~~~k--------~~~~~s~~~l~~agv~~ 204 (230)
T KOG3127|consen 137 AEENAILNKGR----ERVGGCSLYVTLCPCNECAKLIIQAGIKEVYYSSSYYVDK--------YADRASKRMLDLAGVTL 204 (230)
T ss_pred hHHHHHHHhCc----cccCCceEEEeecchHHHHHHHHHhhhhheeeccccccch--------HHHHHHHHHHHhcCcce
Confidence 99999998754 4567899999999999999999999999999998763110 00112345567777775
Q ss_pred Ee
Q 029890 162 KK 163 (186)
Q Consensus 162 ~~ 163 (186)
.+
T Consensus 205 ~q 206 (230)
T KOG3127|consen 205 RQ 206 (230)
T ss_pred EE
Confidence 53
No 17
>cd01283 cytidine_deaminase Cytidine deaminase zinc-binding domain. These enzymes are Zn dependent. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a water molecule to form a hydroxide ion that performs a nucleophilic attack on the substrate. Cytidine deaminases catalyze the deamination of cytidine to uridine and are important in the pyrimadine salvage pathway in many cell types, from bacteria to humans. This family also includes the apoBec proteins, which are a mammal specific expansion of RNA editing enzymes, and the closely related phorbolins, and the AID (activation-induced) enzymes.
Probab=99.80 E-value=5.9e-19 Score=130.72 Aligned_cols=96 Identities=20% Similarity=0.065 Sum_probs=83.3
Q ss_pred HHHHHHHhhcccCCCCCcEEEEEee-CCEEEEEEecCcccCCCCcccHHHHHHHHHHHHcCCccCCCceEEee-----CC
Q 029890 36 TRAVEEAYKGVECGDGGPFGAVVVR-NDEVVVSCHNMVLKSTDPTAHAEVTAIREACKKLNQIELSDCEIYAS-----CE 109 (186)
Q Consensus 36 ~~A~~~A~~~~~~~~~~pVGavIv~-~g~ii~~g~N~~~~~~~~~~HAE~~Ai~~a~~~~~~~~l~~~tly~T-----~e 109 (186)
..|++.++++....++.||||+|+. +|+|+ .|+|......+++.|||+.||.++..... ....+++|+| +|
T Consensus 2 ~~a~~~~~~a~~~~~~~~vga~i~~~~g~i~-~G~n~e~~~~~~~~hAE~~ai~~~~~~~~--~~~~~~i~vs~~~~~~s 78 (112)
T cd01283 2 EAALAAAEFAYAPYSNFTVGAALLTKDGRIF-TGVNVENASYGLTLCAERTAIGKAVSEGL--RRYLVTWAVSDEGGVWS 78 (112)
T ss_pred HHHHHHHHhCcCCCCCCeEEEEEEECCCCEE-EeEEeecCCCCCCcCHHHHHHHHHHHcCC--CceEEEEEEECCCCccC
Confidence 4577777788666667999999997 58886 89999988889999999999999987632 4568999999 99
Q ss_pred CcHHHHHHHHHhCCCEEEEEeecch
Q 029890 110 PCPMCFGAIHLSRIKRLVYGAKAEA 134 (186)
Q Consensus 110 PC~mCa~ai~~~gI~rVvy~~~~~~ 134 (186)
||.||+++|.+.++++|+|...+++
T Consensus 79 PC~~C~~~l~~~~~~~v~~~~~~~~ 103 (112)
T cd01283 79 PCGACRQVLAEFLPSRLYIIIDNPK 103 (112)
T ss_pred CCHHHHHHHHHhCCCCeEEEEEcCC
Confidence 9999999999999999999988765
No 18
>KOG2771 consensus Subunit of tRNA-specific adenosine-34 deaminase [RNA processing and modification]
Probab=99.72 E-value=1.7e-17 Score=142.00 Aligned_cols=133 Identities=19% Similarity=0.262 Sum_probs=109.0
Q ss_pred HHHHHHHHHHHHHhhcccCCCCCcEEEEEee--CCEEEEEEecCcccCCCCcccHHHHHHHHHHHHcC------------
Q 029890 30 RDHKFLTRAVEEAYKGVECGDGGPFGAVVVR--NDEVVVSCHNMVLKSTDPTAHAEVTAIREACKKLN------------ 95 (186)
Q Consensus 30 ~d~~~m~~A~~~A~~~~~~~~~~pVGavIv~--~g~ii~~g~N~~~~~~~~~~HAE~~Ai~~a~~~~~------------ 95 (186)
...++|+.++++|..+... .|+|++|++ ...|++.|....- ..+|..|+-|+++...+++..
T Consensus 166 ~~~ri~e~~I~~a~~~~~~---~~~~a~I~~p~~~~Via~~~~~~~-~~~P~eh~~mv~v~~v~rrq~~~~~~~~~~~~~ 241 (344)
T KOG2771|consen 166 EIARIGELLIAMATDGHAS---RPVSAAIVDPVMDRVIAAGTGEVC-AYNPIEHCVMVLVHFVARRQEEGTWDLHPIPLL 241 (344)
T ss_pred HHHHHHHHHHHHHhhhccc---cCccceecCCccceEEecCCCccc-ccCcHHHHHHHHHHHHHHHHhcccccccccccc
Confidence 4556888888888877653 789999998 3566666654443 347899999999988766432
Q ss_pred --------------------------CccCCCceEEeeCCCcHHHHHHHHHhCCCEEEEEeecchhhhcCchhhHHhhhh
Q 029890 96 --------------------------QIELSDCEIYASCEPCPMCFGAIHLSRIKRLVYGAKAEAAIAIGFDDFIADALR 149 (186)
Q Consensus 96 --------------------------~~~l~~~tly~T~ePC~mCa~ai~~~gI~rVvy~~~~~~~~~~g~~~~~~~~~~ 149 (186)
+|.|.|+++|+|+|||.||+|||+|++|+||+|+.+....|++| +.+.++.
T Consensus 242 ~f~~~~~~~~~~~~~v~~~D~~~d~~pYLCtgydv~ll~EPC~MCsMALvHsRikRvfy~~~~s~~G~L~---s~~~i~~ 318 (344)
T KOG2771|consen 242 IFNAVSSPFYKQTVAVQLLDVSADSFPYLCTGYDVYLLHEPCAMCSMALVHSRIKRVFYCKPMSTAGGLG---SLYRIHQ 318 (344)
T ss_pred ccccccchhhhhhchhccccccccccceeeecceEEEecChHHHHHHHHHHHhhhheeeccCCCCCCCcc---ceeEeee
Confidence 27789999999999999999999999999999999989888888 7789999
Q ss_pred ccccccccceEEEeccchHH
Q 029890 150 GTGFYQKAQLEIKKADGTGA 169 (186)
Q Consensus 150 ~~~~l~~~~v~v~~~~~~~~ 169 (186)
..++||++.+...+.++++.
T Consensus 319 ~k~LNhry~vfr~~~e~d~~ 338 (344)
T KOG2771|consen 319 RKSLNHRYEVFRGYLEEDPI 338 (344)
T ss_pred ccccCcceEEEEeecccccc
Confidence 99999999998777776643
No 19
>TIGR01354 cyt_deam_tetra cytidine deaminase, homotetrameric. This small, homotetrameric zinc metalloprotein is found in humans and most bacteria. A related, homodimeric form with a much larger subunit is found in E. coli and in Arabidopsis. Both types may act on deoxycytidine as well as cytidine.
Probab=99.45 E-value=9.3e-13 Score=99.96 Aligned_cols=88 Identities=18% Similarity=0.155 Sum_probs=74.5
Q ss_pred HHHHHHHHHHhhcccCCCCCcEEEEEee-CCEEEEEEecCcccCCCCcccHHHHHHHHHHHHcCCccCCCceEEe----e
Q 029890 33 KFLTRAVEEAYKGVECGDGGPFGAVVVR-NDEVVVSCHNMVLKSTDPTAHAEVTAIREACKKLNQIELSDCEIYA----S 107 (186)
Q Consensus 33 ~~m~~A~~~A~~~~~~~~~~pVGavIv~-~g~ii~~g~N~~~~~~~~~~HAE~~Ai~~a~~~~~~~~l~~~tly~----T 107 (186)
++.+.|.+.+++++.+.+.+||||+|+. +|+|+. |.|..+...+++.|||+.||.++..+ +...+....++. +
T Consensus 2 ~l~~~a~~a~~~ay~PyS~~~vgAa~~~~~G~i~~-G~n~e~~~~~~s~~AE~~Ai~~a~~~-g~~~i~~i~vv~~~~~~ 79 (127)
T TIGR01354 2 KLFKAAQEARKNAYAPYSNFKVGAALLTKDGRIFT-GVNVENASYPLTICAERSAIGKAISA-GYRKFVAIAVADSADDP 79 (127)
T ss_pred HHHHHHHHHHHhcCCCcCCCeEEEEEEeCCCCEEE-EEeecccCCCCCcCHHHHHHHHHHHc-CCCCeEEEEEEeCCCCC
Confidence 3678999999999999888999999997 678766 99999999999999999999998876 444555555554 5
Q ss_pred CCCcHHHHHHHHHhC
Q 029890 108 CEPCPMCFGAIHLSR 122 (186)
Q Consensus 108 ~ePC~mCa~ai~~~g 122 (186)
..||.||.+.|.+.+
T Consensus 80 ~sPCG~Crq~l~e~~ 94 (127)
T TIGR01354 80 VSPCGACRQVLAEFA 94 (127)
T ss_pred cCccHHHHHHHHHhC
Confidence 789999999999997
No 20
>PF14439 Bd3614-deam: Bd3614-like deaminase
Probab=99.14 E-value=2.7e-10 Score=84.48 Aligned_cols=82 Identities=16% Similarity=0.161 Sum_probs=66.0
Q ss_pred CcEEEEEee-CCEEEEEEecCcccCCCCcccHHHHHHHHHHHHc---------------------CCccCCCceEEeeCC
Q 029890 52 GPFGAVVVR-NDEVVVSCHNMVLKSTDPTAHAEVTAIREACKKL---------------------NQIELSDCEIYASCE 109 (186)
Q Consensus 52 ~pVGavIv~-~g~ii~~g~N~~~~~~~~~~HAE~~Ai~~a~~~~---------------------~~~~l~~~tly~T~e 109 (186)
+.|-|.+|+ +|+++..+.|.- ..+-+.|||+|.+.-..... ....-.|+++|+|+.
T Consensus 8 R~VvA~lv~~~G~l~daa~NtN--a~N~~LHAE~NLl~p~~~~~~~~~~~~~d~~~~~~g~g~~~~~~l~~ga~l~vTlq 85 (136)
T PF14439_consen 8 RRVVAALVSPDGELVDAAVNTN--ADNKMLHAEWNLLMPWLWREWVDSPTDDDEIGNRPGDGPEERRPLPPGARLLVTLQ 85 (136)
T ss_pred cceeEEEECCCCcEEEeeeccC--CccceeehhhhhhhHHHHhhcccCCCcccccccCCCcchhhcCcCCCCcEEEEech
Confidence 568888887 799999999843 46779999999997665443 112235899999999
Q ss_pred CcHHHHHHHHHhCC-------CEEEEEeecchh
Q 029890 110 PCPMCFGAIHLSRI-------KRLVYGAKAEAA 135 (186)
Q Consensus 110 PC~mCa~ai~~~gI-------~rVvy~~~~~~~ 135 (186)
||.||+..+.+++. .+|||+.++|..
T Consensus 86 cCkMCAalv~a~~d~pg~~~~~~vvY~~ed~G~ 118 (136)
T PF14439_consen 86 CCKMCAALVCAASDRPGRRVPIDVVYLNEDPGS 118 (136)
T ss_pred hHHHHHHHHHHHhhCcCCccceEEEEecCCCCc
Confidence 99999999999987 889999988853
No 21
>PRK06848 hypothetical protein; Validated
Probab=99.10 E-value=1.9e-09 Score=83.10 Aligned_cols=96 Identities=18% Similarity=0.149 Sum_probs=72.7
Q ss_pred CChHHHHHHHHHHHHHhhcccCCCCCcEEEEEeeCCEEEEEEecCcccCCCCcccHHHHHHHHHHHHcCCccCCCceEEe
Q 029890 27 VKDRDHKFLTRAVEEAYKGVECGDGGPFGAVVVRNDEVVVSCHNMVLKSTDPTAHAEVTAIREACKKLNQIELSDCEIYA 106 (186)
Q Consensus 27 ~~~~d~~~m~~A~~~A~~~~~~~~~~pVGavIv~~g~ii~~g~N~~~~~~~~~~HAE~~Ai~~a~~~~~~~~l~~~tly~ 106 (186)
+++.+..+++.|.+.+++++.. +.++|||++..++.-|.+|.|..+.....+.|||..||-++... +...+....+..
T Consensus 3 ~~~~~~~L~~~A~~a~~~ay~p-s~f~VgAa~l~~~G~i~~G~NvEnas~~~tiCAEr~Ai~~av~~-g~~~i~~i~~v~ 80 (139)
T PRK06848 3 LNSEDYELIKAAEKVIEKRYRN-DWHHVGAALRTKTGRIYAAVHLEAYVGRITVCAEAIAIGKAISE-GDHEIDTIVAVR 80 (139)
T ss_pred cCHHHHHHHHHHHHHHHhccCC-CCCcEEEEEEeCCCCEEEEEEeecCCCCcccCHHHHHHHHHHHc-CCCceEEEEEEe
Confidence 3455667999999999999987 56999999998544457999988888888999999999998664 222232222222
Q ss_pred ------------eCCCcHHHHHHHHHhCCC
Q 029890 107 ------------SCEPCPMCFGAIHLSRIK 124 (186)
Q Consensus 107 ------------T~ePC~mCa~ai~~~gI~ 124 (186)
...||.+|.+.|.+.+-.
T Consensus 81 ~~~~~~~~~~~~~~~PCG~CRQvl~E~~~~ 110 (139)
T PRK06848 81 HPKPHEDDREIWVVSPCGACRELISDYGKN 110 (139)
T ss_pred cCcccccccCCCccCCChhhHHHHHHhCCC
Confidence 256999999999998633
No 22
>COG0295 Cdd Cytidine deaminase [Nucleotide transport and metabolism]
Probab=99.05 E-value=2.7e-09 Score=81.45 Aligned_cols=97 Identities=20% Similarity=0.142 Sum_probs=77.3
Q ss_pred HHHHHHHHHHhhcccCCCCCcEEEEEeeCCEEEEEEecCcccCCCCcccHHHHHHHHHHHHcCCccCCCceEEee----C
Q 029890 33 KFLTRAVEEAYKGVECGDGGPFGAVVVRNDEVVVSCHNMVLKSTDPTAHAEVTAIREACKKLNQIELSDCEIYAS----C 108 (186)
Q Consensus 33 ~~m~~A~~~A~~~~~~~~~~pVGavIv~~g~ii~~g~N~~~~~~~~~~HAE~~Ai~~a~~~~~~~~l~~~tly~T----~ 108 (186)
..+..|.+.+..++.+.+.++|||++..++.-+.+|.|-.+.+..-+.|||..||.++-.. +...+.-..+|.. .
T Consensus 7 ~l~~~a~~a~~~ay~PYS~F~VGAa~~t~~G~i~tG~NiEnasy~~t~CAErsAI~~ais~-G~~~~~~v~v~~~~~~~~ 85 (134)
T COG0295 7 ELFALAPEAAANAYAPYSKFKVGAALRTKDGRIYTGANVENASYGLTVCAERSAIFKAISE-GKRKFDAVVVVADTGKPV 85 (134)
T ss_pred HHHHHHHHHHHhccCcccCCcEEEEEEeCCCCEEEEEeeecccccchhhHHHHHHHHHHHc-CCCcEEEEEEEcCCCCCc
Confidence 5678888899999999998999999998665679999999999999999999999999876 4444444444443 6
Q ss_pred CCcHHHHHHHHHhC-CCEEEEEe
Q 029890 109 EPCPMCFGAIHLSR-IKRLVYGA 130 (186)
Q Consensus 109 ePC~mCa~ai~~~g-I~rVvy~~ 130 (186)
.||.+|.+-|.... =...+|..
T Consensus 86 sPCG~CRQ~i~Ef~~~d~~ii~~ 108 (134)
T COG0295 86 SPCGACRQVLAEFCGDDTLIILL 108 (134)
T ss_pred CCcHHHHHHHHHhcCCCceEEEe
Confidence 79999999999887 33334443
No 23
>PRK05578 cytidine deaminase; Validated
Probab=98.99 E-value=6.9e-09 Score=79.22 Aligned_cols=90 Identities=22% Similarity=0.202 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHhhcccCCCCCcEEEEEeeCCEEEEEEecCcccCCCCcccHHHHHHHHHHHHcCCccCCCceEEe----e
Q 029890 32 HKFLTRAVEEAYKGVECGDGGPFGAVVVRNDEVVVSCHNMVLKSTDPTAHAEVTAIREACKKLNQIELSDCEIYA----S 107 (186)
Q Consensus 32 ~~~m~~A~~~A~~~~~~~~~~pVGavIv~~g~ii~~g~N~~~~~~~~~~HAE~~Ai~~a~~~~~~~~l~~~tly~----T 107 (186)
+.+++.|.+.+++++.+.+.++|||++..++.-+..|.|..+.....+.|||..||-++... +...+.-..++. .
T Consensus 4 ~~L~~~a~~~~~~ay~PyS~f~Vgaa~~~~~G~i~~G~nvEna~~~~~~CAE~~Ai~~av~~-G~~~i~~i~vv~~~~~~ 82 (131)
T PRK05578 4 KELIEAAIEASEKAYAPYSKFPVGAALLTDDGRIYTGCNIENASYGLTNCAERTAIFKAISE-GGGRLVAIACVGETGEP 82 (131)
T ss_pred HHHHHHHHHHHHhcCCCcCCCceEEEEEeCCCCEEEEEEeeCccccCCcCHHHHHHHHHHHc-CCCceEEEEEEecCCCc
Confidence 35789999999999998888999999998555578999988877889999999999988654 332332222221 2
Q ss_pred CCCcHHHHHHHHHhC
Q 029890 108 CEPCPMCFGAIHLSR 122 (186)
Q Consensus 108 ~ePC~mCa~ai~~~g 122 (186)
..||.+|.+.|.+..
T Consensus 83 ~sPCG~CRQ~l~e~~ 97 (131)
T PRK05578 83 LSPCGRCRQVLAEFG 97 (131)
T ss_pred cCccHHHHHHHHHhC
Confidence 679999999999885
No 24
>PRK12411 cytidine deaminase; Provisional
Probab=98.91 E-value=1.9e-08 Score=76.87 Aligned_cols=90 Identities=21% Similarity=0.182 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHhhcccCCCCCcEEEEEeeCCEEEEEEecCcccCCCCcccHHHHHHHHHHHHcCCccCCCceEEe----e
Q 029890 32 HKFLTRAVEEAYKGVECGDGGPFGAVVVRNDEVVVSCHNMVLKSTDPTAHAEVTAIREACKKLNQIELSDCEIYA----S 107 (186)
Q Consensus 32 ~~~m~~A~~~A~~~~~~~~~~pVGavIv~~g~ii~~g~N~~~~~~~~~~HAE~~Ai~~a~~~~~~~~l~~~tly~----T 107 (186)
..+++.|.+.+++++.+.+.++|||++..++.-|.+|.|..+.....+.|||..||-++... +...++...++. .
T Consensus 4 ~~L~~~a~~~~~~ay~pyS~~~VgAa~~t~~G~i~~G~nvEn~s~~~s~CAE~~Ai~~av~~-g~~~i~~i~v~~~~~~~ 82 (132)
T PRK12411 4 KQLIQEAIEARKQAYVPYSKFQVGAALLTQDGKVYRGCNVENASYGLCNCAERTALFKAVSE-GDKEFVAIAIVADTKRP 82 (132)
T ss_pred HHHHHHHHHHHHhcCCCccCCceEEEEEeCCCCEEEEEEeecCCCCcCcCHHHHHHHHHHHC-CCCceEEEEEEeCCCCC
Confidence 35789999999999988777899999998443456999988888888999999999988654 222232222222 2
Q ss_pred CCCcHHHHHHHHHhC
Q 029890 108 CEPCPMCFGAIHLSR 122 (186)
Q Consensus 108 ~ePC~mCa~ai~~~g 122 (186)
..||.+|.+.|.+..
T Consensus 83 ~sPCG~CRQ~l~Ef~ 97 (132)
T PRK12411 83 VPPCGACRQVMVELC 97 (132)
T ss_pred cCCchhHHHHHHHhC
Confidence 469999999999964
No 25
>PRK08298 cytidine deaminase; Validated
Probab=98.85 E-value=3.7e-08 Score=75.68 Aligned_cols=95 Identities=14% Similarity=0.072 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHhhcccCCCCCcEEEEEeeCCEEEEEEecCcccCCCCcccHHHHHHHHHHHHcCCccCCCceEEe----
Q 029890 31 DHKFLTRAVEEAYKGVECGDGGPFGAVVVRNDEVVVSCHNMVLKSTDPTAHAEVTAIREACKKLNQIELSDCEIYA---- 106 (186)
Q Consensus 31 d~~~m~~A~~~A~~~~~~~~~~pVGavIv~~g~ii~~g~N~~~~~~~~~~HAE~~Ai~~a~~~~~~~~l~~~tly~---- 106 (186)
++++++.|.+..++++.+.+ +|||+|..++.-|.+|.|-.+.+...+.+||.+||-.+... +...+.-..++.
T Consensus 4 ~~~L~~~A~~a~~~aY~PYS--~VgAAllt~dG~i~tG~NvEnas~~~t~CAEr~Ai~~av~~-G~~~~~~i~v~~~~~~ 80 (136)
T PRK08298 4 EQALYDVAKQLIEQRYPNGW--GGAAAMRVEDGTILTSVAPEVINASTELCMETGAICEAHKL-QKRVTHSICVARENEH 80 (136)
T ss_pred HHHHHHHHHHHHHhccCCCC--ceeEEEEeCCCCEEEEEeecCCCCCcchhHHHHHHHHHHHC-CCceEEEEEEEcCCCc
Confidence 55689999999999998876 99999998444457999998888889999999999988654 222222111121
Q ss_pred ----eCCCcHHHHHHHHHhCCCEEEE
Q 029890 107 ----SCEPCPMCFGAIHLSRIKRLVY 128 (186)
Q Consensus 107 ----T~ePC~mCa~ai~~~gI~rVvy 128 (186)
...||.+|.+.|.+.+-.-.|+
T Consensus 81 ~~~~~~sPCG~CRQvl~Ef~~~~~v~ 106 (136)
T PRK08298 81 SELKVLSPCGVCQERLFYWGPDVMCA 106 (136)
T ss_pred CCCcccCCChhHHHHHHHhCCCCEEE
Confidence 1469999999999996443333
No 26
>PRK14719 bifunctional RNAse/5-amino-6-(5-phosphoribosylamino)uracil reductase; Provisional
Probab=98.78 E-value=1.2e-08 Score=89.86 Aligned_cols=78 Identities=6% Similarity=-0.029 Sum_probs=58.4
Q ss_pred cCCCceEEeeCCCcHHHHHHHHHhCCCEEEEEeecchhhhcCchhhHHhhhhccccccccceEEE-eccchHHHHHHHHH
Q 029890 98 ELSDCEIYASCEPCPMCFGAIHLSRIKRLVYGAKAEAAIAIGFDDFIADALRGTGFYQKAQLEIK-KADGTGAAIAEQVF 176 (186)
Q Consensus 98 ~l~~~tly~T~ePC~mCa~ai~~~gI~rVvy~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~v~v~-~~~~~~~~l~~~~~ 176 (186)
-+.|.++|+|++||.-|+.+|+.+||+|||++. |++..+.|.. -++.+.|+++||+|. .+.+++..+.+.|+
T Consensus 42 gi~g~~i~~s~~p~~~cad~ii~~gi~rVVi~~-D~d~~G~~~~------~~~~~~L~~aGi~V~~~l~~e~~~l~~~~~ 114 (360)
T PRK14719 42 KINANFITVSNTPVFQIADDLIAENISEVILLT-DFDRAGRVYA------KNIMEEFQSRGIKVNNLIRKEIIKYSRGDL 114 (360)
T ss_pred CCCCcEEEEeCCchHHHHHHHHHcCCCEEEEEE-CCCCCCCccc------hHHHHHHHHCCCEEEeehHHHHHHHhHHhh
Confidence 357999999999999999999999999999999 7665332210 123677999999985 45556777777666
Q ss_pred HHhhcc
Q 029890 177 EKTKAK 182 (186)
Q Consensus 177 ~~~~~~ 182 (186)
+...+.
T Consensus 115 ~~ie~~ 120 (360)
T PRK14719 115 KDIESL 120 (360)
T ss_pred hcchhh
Confidence 663333
No 27
>TIGR01355 cyt_deam_dimer cytidine deaminase, homodimeric. This homodimeric zinc metalloprotein is found in Arabidopis and some Proteobacteria. A related, homotetrameric form with a much smaller subunit is found most bacteria and in animals. Both types may act on deoxycytidine as well as cytidine.
Probab=98.76 E-value=7.5e-08 Score=82.07 Aligned_cols=89 Identities=18% Similarity=0.057 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHhhcccCCCCCcEEEEEeeCCEEEEEEecCc--ccCCCCcccHHHHHHHHHHHHcCCccCCCceEEeeC
Q 029890 31 DHKFLTRAVEEAYKGVECGDGGPFGAVVVRNDEVVVSCHNMV--LKSTDPTAHAEVTAIREACKKLNQIELSDCEIYASC 108 (186)
Q Consensus 31 d~~~m~~A~~~A~~~~~~~~~~pVGavIv~~g~ii~~g~N~~--~~~~~~~~HAE~~Ai~~a~~~~~~~~l~~~tly~T~ 108 (186)
+..+++.|.+.+++++.+.+.++|||++..++.-|..|.|.. +.....+.|||..||-++... +...+ ..|.++.
T Consensus 22 ~~~L~~~a~~a~~~AyaPYS~F~VGAall~~~G~iy~GvNvE~~nas~~~tiCAEr~Ai~~Av~~-Ge~~i--~~Iav~~ 98 (283)
T TIGR01355 22 PKLLPKLIPKAASYARAPISKFNVGAVGRGSSGRFYLGVNVEFPGLPLHHSIHAEQFLISHLALN-NERGL--NDLAVSY 98 (283)
T ss_pred HHHHHHHHHHHHhcCcCCccCCeeeEEEEeCCCCEEEEEEeccCCCCCCccccHHHHHHHHHHHc-CCCce--EEEEEEe
Confidence 446899999999999999999999999998544468999976 445566899999999988764 22222 4566678
Q ss_pred CCcHHHHHHHHHhC
Q 029890 109 EPCPMCFGAIHLSR 122 (186)
Q Consensus 109 ePC~mCa~ai~~~g 122 (186)
.||.+|.+.|.+..
T Consensus 99 ~PCG~CRQ~l~Ef~ 112 (283)
T TIGR01355 99 APCGHCRQFLNEIR 112 (283)
T ss_pred CCcchhHHHHHHhc
Confidence 89999999999984
No 28
>KOG0833 consensus Cytidine deaminase [Nucleotide transport and metabolism]
Probab=98.65 E-value=4.5e-07 Score=71.60 Aligned_cols=99 Identities=14% Similarity=0.040 Sum_probs=75.1
Q ss_pred hHHHHHHHHHHHHHhhcccCCCCCcEEEEEeeCCEEEEEEecCcccCCCCcccHHHHHHHHHHHHcCCccCCCceEEee-
Q 029890 29 DRDHKFLTRAVEEAYKGVECGDGGPFGAVVVRNDEVVVSCHNMVLKSTDPTAHAEVTAIREACKKLNQIELSDCEIYAS- 107 (186)
Q Consensus 29 ~~d~~~m~~A~~~A~~~~~~~~~~pVGavIv~~g~ii~~g~N~~~~~~~~~~HAE~~Ai~~a~~~~~~~~l~~~tly~T- 107 (186)
....+....+.+..+.+..+.+.+||||+++-+...|..|.|-.+...++++|||+-||.++..+- ...+.- -..++
T Consensus 19 ~~~~~L~~l~~~A~~~AyaPyS~fkVGA~~r~ssGrif~G~NVEn~~~~~sIcAEr~ai~~l~l~g-~~k~~~-~aV~~~ 96 (173)
T KOG0833|consen 19 EDPQELLKLARKAMKLAYAPYSKFKVGAAGRASSGRIFLGVNVENASYHHSICAERFAIANLALNG-ERKFRA-IAVVAY 96 (173)
T ss_pred CCHHHHHHHHHHHHHhccCCccCCceEEEEEecCCcEEEeeeecccCCCCcccHHHHHHHHHHHcC-cccceE-EEEEec
Confidence 345567777777777788888889999999985555789999999889999999999999988752 112221 12222
Q ss_pred -----CCCcHHHHHHHHHhCCCEEEEE
Q 029890 108 -----CEPCPMCFGAIHLSRIKRLVYG 129 (186)
Q Consensus 108 -----~ePC~mCa~ai~~~gI~rVvy~ 129 (186)
..||.-|.+-|...+-...++.
T Consensus 97 ~~~~f~tPCG~CRQfl~Ef~~~~~l~~ 123 (173)
T KOG0833|consen 97 EDGDFTTPCGVCRQFLREFGNASLLLE 123 (173)
T ss_pred CCCCcCCCcHHHHHHHHHHhhcceeee
Confidence 6899999999999998744443
No 29
>PLN02402 cytidine deaminase
Probab=98.63 E-value=1.8e-07 Score=80.19 Aligned_cols=89 Identities=16% Similarity=0.075 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHHhhcccCCCCCcEEEEEeeCCEEEEEEecCcccCCCC--cccHHHHHHHHHHHHcCCccCCCceEEeeC
Q 029890 31 DHKFLTRAVEEAYKGVECGDGGPFGAVVVRNDEVVVSCHNMVLKSTDP--TAHAEVTAIREACKKLNQIELSDCEIYASC 108 (186)
Q Consensus 31 d~~~m~~A~~~A~~~~~~~~~~pVGavIv~~g~ii~~g~N~~~~~~~~--~~HAE~~Ai~~a~~~~~~~~l~~~tly~T~ 108 (186)
++..+.++...++.++.+.+.++|||++..++.-|..|.|..+..... +.|||..||-++... +...+. .|.++.
T Consensus 25 ~~ll~~l~~~A~~~AyaPYS~F~VGAa~l~~~G~i~~GvNVEnasy~l~~tiCAEr~Ai~~av~~-G~~~i~--~iaV~~ 101 (303)
T PLN02402 25 LQLLPSLVKSAQSLARPPISKYHVGAVGLGSSGRIFLGVNLEFPGLPLHHSVHAEQFLITNLTLN-AEPHLK--YVAVSA 101 (303)
T ss_pred HHHHHHHHHHHHHhcCCCCCCCeeeEEEEeCCCCEEEEEeeecCCCCCCCcccHHHHHHHHHHHc-CCCceE--EEEEEe
Confidence 445677777777788888888999999998544568999987776655 899999999988664 222333 466777
Q ss_pred CCcHHHHHHHHHhC
Q 029890 109 EPCPMCFGAIHLSR 122 (186)
Q Consensus 109 ePC~mCa~ai~~~g 122 (186)
.||.+|.+.|.+..
T Consensus 102 sPCG~CRQ~l~Ef~ 115 (303)
T PLN02402 102 APCGHCRQFFQEIR 115 (303)
T ss_pred CCCcccHHHHHHhc
Confidence 89999999999884
No 30
>PLN02182 cytidine deaminase
Probab=98.48 E-value=1.4e-06 Score=75.65 Aligned_cols=92 Identities=14% Similarity=0.071 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHhhcccCCCCCcEEEEEeeCCEEEEEEecCcccCCCC--cccHHHHHHHHHHHHcCCccCCCceEEee-
Q 029890 31 DHKFLTRAVEEAYKGVECGDGGPFGAVVVRNDEVVVSCHNMVLKSTDP--TAHAEVTAIREACKKLNQIELSDCEIYAS- 107 (186)
Q Consensus 31 d~~~m~~A~~~A~~~~~~~~~~pVGavIv~~g~ii~~g~N~~~~~~~~--~~HAE~~Ai~~a~~~~~~~~l~~~tly~T- 107 (186)
++....++...+..++.+.+.++|||++...+.-|..|.|-.+.+... +.|||..||.++..+ +...+....+.+.
T Consensus 45 ~~ll~~Ll~~A~~~AyaPyS~F~VGAa~l~~sG~iy~GvNVEnas~pl~~tICAEr~AI~~A~~~-Ge~~i~~iaVaV~~ 123 (339)
T PLN02182 45 PIRLPNLIRKAMCLARAPISKYKVGAVGRASSGRVYLGVNVDFPGLPLHHSIHAEQFLVTNLALN-SEKDLCELAVAIST 123 (339)
T ss_pred HHHHHHHHHHHHhcCcCCccCCeeeEEEEeCCCCEEEEEEeecCCCccCCccCHHHHHHHHHHHC-CCCceEEEEEEEec
Confidence 334445555557778888888999999988544468999988776555 899999999998765 2222322223322
Q ss_pred -----CCCcHHHHHHHHHhCC
Q 029890 108 -----CEPCPMCFGAIHLSRI 123 (186)
Q Consensus 108 -----~ePC~mCa~ai~~~gI 123 (186)
..||.+|.+.|.+..-
T Consensus 124 ~~~~~~sPCG~CRQfm~Ef~~ 144 (339)
T PLN02182 124 DGKEFGTPCGHCLQFLMEMSN 144 (339)
T ss_pred CCCCCcCCCchhHHHHHHhCC
Confidence 6799999999999853
No 31
>PRK09027 cytidine deaminase; Provisional
Probab=98.48 E-value=1.3e-06 Score=74.98 Aligned_cols=95 Identities=7% Similarity=0.009 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHHhhcccCCCCCcEEEEEeeCCEEEEEEecCcccCCCCcccHHHHHHHHHHHHcCCc---cCCCceEEee
Q 029890 31 DHKFLTRAVEEAYKGVECGDGGPFGAVVVRNDEVVVSCHNMVLKSTDPTAHAEVTAIREACKKLNQI---ELSDCEIYAS 107 (186)
Q Consensus 31 d~~~m~~A~~~A~~~~~~~~~~pVGavIv~~g~ii~~g~N~~~~~~~~~~HAE~~Ai~~a~~~~~~~---~l~~~tly~T 107 (186)
+..+++.|++.+.+++.+.+.+|||++|..++.-|..|.|..+...+++.+||..||..+... +. .++...++..
T Consensus 189 ~~~L~~~A~~aa~~SYaPYS~f~vGaAl~~~dG~i~~G~nvENAAynpslcaer~Al~~~v~~--G~~~~~i~~i~lv~~ 266 (295)
T PRK09027 189 GDPLIQAALDAANRSHAPYSQSYSGVALETKDGRIYTGRYAENAAFNPSLPPLQGALNLLNLS--GEDFSDIQRAVLVEK 266 (295)
T ss_pred HHHHHHHHHHHHHhccCCccCCceeEEEEeCCCCEEEEEEEEcCCCCCcccHHHHHHHHHHHc--CCCccCEEEEEEEeC
Confidence 346899999999999999999999999998444457999999999999999999999988654 33 3444444442
Q ss_pred ----CCCcHHHHHHHHHhCCCEEE
Q 029890 108 ----CEPCPMCFGAIHLSRIKRLV 127 (186)
Q Consensus 108 ----~ePC~mCa~ai~~~gI~rVv 127 (186)
..||.+|.+.|...+-..+-
T Consensus 267 ~~~~ispcg~cRq~L~ef~~~~~~ 290 (295)
T PRK09027 267 ADAKLSQWDATQATLKALGCHELE 290 (295)
T ss_pred CCCCcCchHHHHHHHHHhCCCCcE
Confidence 46999999999987654443
No 32
>PRK09027 cytidine deaminase; Provisional
Probab=98.35 E-value=4.4e-06 Score=71.73 Aligned_cols=84 Identities=20% Similarity=0.151 Sum_probs=62.4
Q ss_pred HHHHHHHhhcccCCCCCcEEEEEeeCCEEEEEEecCccc--CCCCcccHHHHHHHHHHHHcCCccCCCceEEeeCCCcHH
Q 029890 36 TRAVEEAYKGVECGDGGPFGAVVVRNDEVVVSCHNMVLK--STDPTAHAEVTAIREACKKLNQIELSDCEIYASCEPCPM 113 (186)
Q Consensus 36 ~~A~~~A~~~~~~~~~~pVGavIv~~g~ii~~g~N~~~~--~~~~~~HAE~~Ai~~a~~~~~~~~l~~~tly~T~ePC~m 113 (186)
.+.-..+..++.+.+.++|||++..++.-|..|.|-.+. ....+.|||..||-++... +...+ ..+.++..||.+
T Consensus 55 ~ll~~a~~~AyaPyS~F~VGAa~~~~sG~iy~GvNvE~~~~s~~~tiCAEr~Ai~~a~~~-Ge~~i--~~I~v~~sPCG~ 131 (295)
T PRK09027 55 ALLPLAAACAVTPISHFNVGAIARGVSGNFYFGANMEFAGAALQQTVHAEQSAISHAWLR-GEKAI--ADITVNYTPCGH 131 (295)
T ss_pred HHHHHHHHhccCCCCCCcEEEEEEeCCCCEEEEEeeccCCCCCCCCcCHHHHHHHHHHHC-CCCce--EEEEEEecCchh
Confidence 444455556777777799999999854446799997664 4467899999999998764 22223 455667789999
Q ss_pred HHHHHHHhC
Q 029890 114 CFGAIHLSR 122 (186)
Q Consensus 114 Ca~ai~~~g 122 (186)
|.+.|.+..
T Consensus 132 CRQ~l~E~~ 140 (295)
T PRK09027 132 CRQFMNELN 140 (295)
T ss_pred hHHHHHHhC
Confidence 999999874
No 33
>TIGR01355 cyt_deam_dimer cytidine deaminase, homodimeric. This homodimeric zinc metalloprotein is found in Arabidopis and some Proteobacteria. A related, homotetrameric form with a much smaller subunit is found most bacteria and in animals. Both types may act on deoxycytidine as well as cytidine.
Probab=98.27 E-value=1.2e-05 Score=68.61 Aligned_cols=95 Identities=8% Similarity=0.026 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHHHhhcccCCCCCcEEEEEeeCCEEEEEEecCcccCCCCcccHHHHHHHHHHHHcCCccCCC---ceEEe
Q 029890 30 RDHKFLTRAVEEAYKGVECGDGGPFGAVVVRNDEVVVSCHNMVLKSTDPTAHAEVTAIREACKKLNQIELSD---CEIYA 106 (186)
Q Consensus 30 ~d~~~m~~A~~~A~~~~~~~~~~pVGavIv~~g~ii~~g~N~~~~~~~~~~HAE~~Ai~~a~~~~~~~~l~~---~tly~ 106 (186)
..+.+++.|++.+++++.+.+.+||||+|+..+.-|..|.|..+....++.+||..||..+...-++..+.+ ..|--
T Consensus 173 ~~~~l~~~A~~a~~~sYaPYS~f~vgaal~~~~g~i~~G~nvENAay~~slcaer~Ai~~~v~~g~g~~~~~i~~aVl~e 252 (283)
T TIGR01355 173 EISHLKQQALKAANRSYAPYSKSPSGVALLDKEGKVYRGWYIESAAFNPSLGPVQAALVDFMANGGGKGFEDIVRAVLVE 252 (283)
T ss_pred hHHHHHHHHHHHHHhccCCCcCCceeEEEEeCCCCEEEEEEeecCCCCCcccHHHHHHHHHHHhCCCCChhheeEEEEEe
Confidence 334589999999999999999999999999855556799999999999999999999998866422223332 22221
Q ss_pred ----eCCCcHHHHHHHHHhCCC
Q 029890 107 ----SCEPCPMCFGAIHLSRIK 124 (186)
Q Consensus 107 ----T~ePC~mCa~ai~~~gI~ 124 (186)
...||.+|...|-..+..
T Consensus 253 ~~~~~vs~~~~~r~~l~~~~p~ 274 (283)
T TIGR01355 253 KADAKVSHEATARTLLETIAPS 274 (283)
T ss_pred cCCCccChHHHHHHHHHHhCCC
Confidence 257999999999887644
No 34
>PLN02402 cytidine deaminase
Probab=97.64 E-value=0.00029 Score=60.75 Aligned_cols=63 Identities=16% Similarity=0.115 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHhhcccCCCCCcEEEEEeeCCEEEEEEecCcccCCCCcccHHHHHHHHHHHH
Q 029890 31 DHKFLTRAVEEAYKGVECGDGGPFGAVVVRNDEVVVSCHNMVLKSTDPTAHAEVTAIREACKK 93 (186)
Q Consensus 31 d~~~m~~A~~~A~~~~~~~~~~pVGavIv~~g~ii~~g~N~~~~~~~~~~HAE~~Ai~~a~~~ 93 (186)
...+++.|++.+++++.+.+.+||||+|+.++.-|..|.|..+....++.+||..||..+...
T Consensus 192 ~~~L~~~A~~a~~~sYaPYS~f~VGaal~~~dG~i~~G~nvENAay~~slcAer~Ai~~~v~~ 254 (303)
T PLN02402 192 SDDLKNEALEAANKSHAPYSNCPSGVALMDCEGKVYRGSYMESAAYNPSMGPVQAALVAYVAG 254 (303)
T ss_pred HHHHHHHHHHHHHcccCCccCCceeEEEEeCCCCEEEEEEEEcCCCCCcccHHHHHHHHHHHc
Confidence 356899999999999999999999999998433367999999999999999999999987654
No 35
>PF08211 dCMP_cyt_deam_2: Cytidine and deoxycytidylate deaminase zinc-binding region ; InterPro: IPR013171 This region contains the zinc-binding domain of cytidine and deoxycytidylate deaminase. Cytidine deaminase (3.5.4.5 from EC) (cytidine aminohydrolase) catalyzes the hydrolysis of cytidine into uridine and ammonia while deoxycytidylate deaminase (3.5.4.12 from EC) (dCMP deaminase) hydrolyzes dCMP into dUMP. Both enzymes are known to bind zinc and to require it for their catalytic activity [, ]. These two enzymes do not share any sequence similarity with the exception of a region that contains three conserved histidine and cysteine residues which are thought to be involved in the binding of the catalytic zinc ion.; GO: 0004126 cytidine deaminase activity, 0008270 zinc ion binding; PDB: 1CTU_A 1AF2_A 1ALN_A 1CTT_A 4EG2_C.
Probab=96.89 E-value=0.003 Score=47.80 Aligned_cols=61 Identities=15% Similarity=0.141 Sum_probs=44.1
Q ss_pred HHHHHHHHHHhhcccCCCCCcEEEEEeeCCEEEEEEecCcccCCCCcccHHHHHHHHHHHH
Q 029890 33 KFLTRAVEEAYKGVECGDGGPFGAVVVRNDEVVVSCHNMVLKSTDPTAHAEVTAIREACKK 93 (186)
Q Consensus 33 ~~m~~A~~~A~~~~~~~~~~pVGavIv~~g~ii~~g~N~~~~~~~~~~HAE~~Ai~~a~~~ 93 (186)
...+.|++.|.++..+.+..|+|++|+..+..|..|++-.+...+|+..+.+.||..+...
T Consensus 35 ~l~~~A~~Aa~~syaPYS~~~sGvAL~~~~G~i~~G~y~EnAAfNPSl~PlQ~AL~~~~~~ 95 (124)
T PF08211_consen 35 PLVQAALEAANRSYAPYSKCPSGVALLTSDGRIYTGRYAENAAFNPSLPPLQAALVQAVLA 95 (124)
T ss_dssp HHHHHHHHHHCT-B-TTT---EEEEEEETTS-EEEEE-B--TTSTT-B-HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhccCCccCCceeEEEEeCCCCEEEEEEEeecccCCChHHHHHHHHHHHHc
Confidence 3789999999999999998999999998555578999999999999999999999887654
No 36
>PF14437 MafB19-deam: MafB19-like deaminase
Probab=96.24 E-value=0.048 Score=42.34 Aligned_cols=53 Identities=26% Similarity=0.362 Sum_probs=42.1
Q ss_pred cccHHHHHHHHHHHHcCCccCCCceEEeeCCCcHHHHHHH----HHhCCCEEEEEeec
Q 029890 79 TAHAEVTAIREACKKLNQIELSDCEIYASCEPCPMCFGAI----HLSRIKRLVYGAKA 132 (186)
Q Consensus 79 ~~HAE~~Ai~~a~~~~~~~~l~~~tly~T~ePC~mCa~ai----~~~gI~rVvy~~~~ 132 (186)
..|||+.+|.+|.++ +...=...+|||...+|..|-+.| ..+|++.+..-..+
T Consensus 80 ~~HAE~~aiqqA~d~-G~~~g~~~tm~Vdr~vC~~C~~~i~~~a~~lGl~~L~I~~~~ 136 (146)
T PF14437_consen 80 KAHAEAGAIQQAYDA-GKTVGRSMTMYVDRDVCGYCGGDIPSMAEKLGLKSLTIHEPD 136 (146)
T ss_pred HHHHHHHHHHHHHHh-cCccCCeEEEEECcccchHHHHHHHHHHHHcCCCeEEEEecC
Confidence 569999999999887 322256789999988999998755 56799998766553
No 37
>PF14431 YwqJ-deaminase: YwqJ-like deaminase
Probab=96.08 E-value=0.033 Score=42.03 Aligned_cols=46 Identities=22% Similarity=0.313 Sum_probs=32.3
Q ss_pred CcccHHHHHHHHHHHHcC--CccCCCceEEe-------------eCCCcHHHHHHHHHhCC
Q 029890 78 PTAHAEVTAIREACKKLN--QIELSDCEIYA-------------SCEPCPMCFGAIHLSRI 123 (186)
Q Consensus 78 ~~~HAE~~Ai~~a~~~~~--~~~l~~~tly~-------------T~ePC~mCa~ai~~~gI 123 (186)
...|||+.||.++..... ...+++..+++ -..||..|+..+.+.||
T Consensus 65 ~G~cAEv~avn~~L~~~d~~~~~~~~a~~~~~~ir~~~~~~~G~~~~pC~nC~~~l~~~~v 125 (125)
T PF14431_consen 65 AGRCAEVIAVNDALWARDAARRSLEGAKITTRRIREPGDPEHGKYAPPCRNCAALLKHFGV 125 (125)
T ss_pred CCcccHHHHHHHHHHhhhccccccccccceeeeeecccCCCCCCCCCCCchHHHHHhhcCC
Confidence 456999999999877522 12333444433 24699999999999886
No 38
>PF08210 APOBEC_N: APOBEC-like N-terminal domain; InterPro: IPR013158 This domain is found at the N terminus of the Apolipoprotein B mRNA editing enzyme. Apobec-1 catalyzes C to U editing of apolipoprotein B (apoB) mRNA in the mammalian intestine. The N-terminal domain of APOBEC-1 like proteins is the catalytic domain, while the C-terminal domain is a pseudocatalyitc domain. More specifically, the catalytic domain is a zinc dependent deaminases domain and is essential for cytidine deamination. APOBEC-3 like members contain two copies of this domain. This family also includes the functionally homologous activation induced deaminase, which is essential for the development of antibody diversity in B lymphocytes. RNA editing by APOBEC-1 requires homodimerisation and this complex interacts with RNA binding proteins to from the editosome [] (and references therein).; GO: 0008270 zinc ion binding, 0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines; PDB: 3IQS_A 3IR2_A 3V4J_B 2KEM_A 2KBO_A 3V4K_A 3E1U_A 2JYW_A 2RPZ_A.
Probab=95.70 E-value=0.029 Score=45.26 Aligned_cols=107 Identities=16% Similarity=0.052 Sum_probs=57.9
Q ss_pred cEEEEEee--CCEEEEEEecCcccCCCCcccHHHHHHHHHHHHc--CCccCCCceEEeeCCCcHH----HHHHHHHhCCC
Q 029890 53 PFGAVVVR--NDEVVVSCHNMVLKSTDPTAHAEVTAIREACKKL--NQIELSDCEIYASCEPCPM----CFGAIHLSRIK 124 (186)
Q Consensus 53 pVGavIv~--~g~ii~~g~N~~~~~~~~~~HAE~~Ai~~a~~~~--~~~~l~~~tly~T~ePC~m----Ca~ai~~~gI~ 124 (186)
.+-|.-|. +|.-+-.|+-.-. .....|||+.-|.+..... .....-.-|.|+|..||+. |+..|+..--+
T Consensus 25 t~Lcy~v~~~~~~~~~~g~~~n~--~~~~~HAE~~fl~~i~~~~~~~~~~~y~ITwy~SwSPC~~~~~~Ca~~i~~FL~~ 102 (188)
T PF08210_consen 25 TYLCYEVEGRDGSWVQRGYFRNE--NCKGRHAELCFLDWIRSWLLFDPDQIYRITWYLSWSPCPESDHCCAEKIAEFLKK 102 (188)
T ss_dssp -EEEEEEEEECTTEEEECECCST--TSTSB-HHHHHHHHCCCGTB-TTTSEEEEEEEESSS--CC----HHHHHHHHHCC
T ss_pred EEEEEEEEEecCCCceEEEEECC--CCCCCCHHHHHHHHHHHhhccCCCceEEEEEEEecCCCcchhhHHHHHHHHHHHH
Confidence 46777775 4445555553111 1168899999998754322 1122224688999999999 99999875333
Q ss_pred E-------EEEEe-ecchhhhcCchhhHHhhhhccccccccceEEEeccc
Q 029890 125 R-------LVYGA-KAEAAIAIGFDDFIADALRGTGFYQKAQLEIKKADG 166 (186)
Q Consensus 125 r-------Vvy~~-~~~~~~~~g~~~~~~~~~~~~~~l~~~~v~v~~~~~ 166 (186)
. .+|.+ .+... .+.....-.|...|.++||.|..+..
T Consensus 103 ~~~~~v~L~I~~arLY~~~-----~~~~~~~~eGLr~L~~aGv~v~iM~~ 147 (188)
T PF08210_consen 103 HLKPNVSLSIFAARLYYHW-----EPEPLWNQEGLRRLASAGVQVEIMSY 147 (188)
T ss_dssp C--TTEEEEEEESS--STT-----STT---HHHHHHHHHHCTEEEEE-SH
T ss_pred hCCCCCeEEEEEEeeeeec-----CCcchhHHHHHHHHHHcCCEEEEcCH
Confidence 3 34443 11110 00000022456668888999998863
No 39
>PF14424 Toxin-deaminase: The BURPS668_1122 family of deaminases
Probab=94.53 E-value=0.081 Score=40.44 Aligned_cols=45 Identities=18% Similarity=0.375 Sum_probs=37.2
Q ss_pred CcccHHHHHHHHHHHHcCCccC---CCceEEeeCCCcHHHHHHHHHhC
Q 029890 78 PTAHAEVTAIREACKKLNQIEL---SDCEIYASCEPCPMCFGAIHLSR 122 (186)
Q Consensus 78 ~~~HAE~~Ai~~a~~~~~~~~l---~~~tly~T~ePC~mCa~ai~~~g 122 (186)
....+|...|+..+++++.... ...+||+-+.||..|...|.+..
T Consensus 72 R~~DsE~KiL~~ia~~l~~~~~~~~G~i~l~te~~pC~SC~~vi~qF~ 119 (133)
T PF14424_consen 72 RNNDSEYKILEDIAKKLGDNPDPSGGTIDLFTELPPCESCSNVIEQFK 119 (133)
T ss_pred ccccHHHHHHHHHHHHhccccccCCceEEEEecCCcChhHHHHHHHHH
Confidence 3568999999999999865544 24789999999999999888764
No 40
>PF14440 XOO_2897-deam: Xanthomonas XOO_2897-like deaminase
Probab=87.13 E-value=0.57 Score=35.18 Aligned_cols=56 Identities=18% Similarity=0.279 Sum_probs=40.2
Q ss_pred CCcccHHHHHHHHHHHHcCCccCCCceEEeeCCCcHH---HHHHHHHh-CCCEEEEEeecc
Q 029890 77 DPTAHAEVTAIREACKKLNQIELSDCEIYASCEPCPM---CFGAIHLS-RIKRLVYGAKAE 133 (186)
Q Consensus 77 ~~~~HAE~~Ai~~a~~~~~~~~l~~~tly~T~ePC~m---Ca~ai~~~-gI~rVvy~~~~~ 133 (186)
....|+|..++..+.+. +-..-.=..||+-+|||.. |+..|-.. -=-+|.|..++.
T Consensus 43 ~~~~H~E~~il~~l~~~-~v~p~~I~elYtEl~PC~~~~~C~~~l~~~~p~a~vt~s~~yg 102 (118)
T PF14440_consen 43 GGKPHSERAILHQLRAH-GVPPEQITELYTELEPCELGGYCARMLRNSLPGAEVTYSFDYG 102 (118)
T ss_pred CCCCChHHHHHHHHHHc-CCcHHHHHHHHHhcccccccchHHHHHHhhCCCCeEEEeccCC
Confidence 45789999999887652 1111123578999999988 99999887 244677766655
No 41
>PF14441 OTT_1508_deam: OTT_1508-like deaminase
Probab=86.36 E-value=1.9 Score=32.83 Aligned_cols=45 Identities=20% Similarity=0.301 Sum_probs=33.4
Q ss_pred CCCCcccHHHHHHHHHHHHcCCccCCCceEEeeCCCcHHHHHHHHHhC
Q 029890 75 STDPTAHAEVTAIREACKKLNQIELSDCEIYASCEPCPMCFGAIHLSR 122 (186)
Q Consensus 75 ~~~~~~HAE~~Ai~~a~~~~~~~~l~~~tly~T~ePC~mCa~ai~~~g 122 (186)
...+..|||+..+....+. ..-..--|=+|--||.+|...|...+
T Consensus 63 ~~~~~vHaE~~ll~~~~~~---~~~~~~yIG~SK~~C~lC~~~~~~~~ 107 (142)
T PF14441_consen 63 SFKPSVHAEMQLLDHLERH---FDPPPRYIGCSKPSCFLCYLYFQAHG 107 (142)
T ss_pred CCCCCeehHHHHHHHHHHh---cCCCCCEEEEeCchHHhHHHHHHHhC
Confidence 3467899999999987765 11122334468889999999999998
No 42
>TIGR00355 purH phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase. Involved in purine ribonucleotide biosynthesis. The IMP cyclohydrolase activity is in the N-terminal region.
Probab=83.04 E-value=9.1 Score=35.58 Aligned_cols=67 Identities=12% Similarity=0.041 Sum_probs=52.4
Q ss_pred EEEEeeCCEEEEEEecCcccCCCCcccHHHHHHHHHHHHcCCccCCCceEEe-eCCCcHHHHHHHHHhCCCEEEE
Q 029890 55 GAVVVRNDEVVVSCHNMVLKSTDPTAHAEVTAIREACKKLNQIELSDCEIYA-SCEPCPMCFGAIHLSRIKRLVY 128 (186)
Q Consensus 55 GavIv~~g~ii~~g~N~~~~~~~~~~HAE~~Ai~~a~~~~~~~~l~~~tly~-T~ePC~mCa~ai~~~gI~rVvy 128 (186)
+-|++++|+.|+.|.-++ .-.+|-..|+.+|.+. +..++|+.|=. -..|-+-|......+||+-|+=
T Consensus 413 AIv~akd~~tvGiGaGQ~-----sRV~s~riA~~kA~~~--~~~~~G~vlASDAFFPF~D~ve~aa~aGi~aIiQ 480 (511)
T TIGR00355 413 AIVYAKNNMTVGVGAGQM-----SRVGSAKIAGIKADDE--GLEAKGSSLASDAFFPFRDGVEEAAAAGITCIIQ 480 (511)
T ss_pred eEEEEeCCeEEEecCCCc-----cHHHHHHHHHHHHHhh--CCCccCcEEEeccccCCCccHHHHHHcCCEEEEc
Confidence 456667999999998654 3457778888888653 45678888755 4679999999999999999983
No 43
>PRK00881 purH bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional
Probab=82.91 E-value=16 Score=34.02 Aligned_cols=91 Identities=13% Similarity=0.077 Sum_probs=63.4
Q ss_pred CChHHHHHHHHHHHHHhhcccCCCCCcEEEEEeeCCEEEEEEecCcccCCCCcccHHHHHHHHHHHHcCCccCCCceEEe
Q 029890 27 VKDRDHKFLTRAVEEAYKGVECGDGGPFGAVVVRNDEVVVSCHNMVLKSTDPTAHAEVTAIREACKKLNQIELSDCEIYA 106 (186)
Q Consensus 27 ~~~~d~~~m~~A~~~A~~~~~~~~~~pVGavIv~~g~ii~~g~N~~~~~~~~~~HAE~~Ai~~a~~~~~~~~l~~~tly~ 106 (186)
.++++.+=|.-|...++.-.. +.+ |++++|.+|+.|.-++ ...++-..||+++.+. +..+.|+.+-.
T Consensus 393 pt~~e~~Dl~faw~v~K~vkS----NaI--Vvvkd~~~vgIgaGQ~-----sRvd~t~~Ai~rag~~--~~~~~gav~aS 459 (513)
T PRK00881 393 PTEQELKDLLFAWKVVKHVKS----NAI--VYAKDGQTVGIGAGQM-----SRVDSARIAIEKAGDA--GLDLKGAVLAS 459 (513)
T ss_pred CCHHHHHHHHHHHHHHHhcCC----CcE--EEEeCCeEEEECCCCc-----chHHHHHHHHHHHHHh--ccCcCCeEEEe
Confidence 344444456666666654322 334 8889999999998543 2347778888888764 34567877754
Q ss_pred -eCCCcHHHHHHHHHhCCCEEEEEe
Q 029890 107 -SCEPCPMCFGAIHLSRIKRLVYGA 130 (186)
Q Consensus 107 -T~ePC~mCa~ai~~~gI~rVvy~~ 130 (186)
-..|=+-+......+||+-|+-..
T Consensus 460 DafFPf~Dtie~aa~~Gv~aIiqPg 484 (513)
T PRK00881 460 DAFFPFRDGVEAAAKAGITAIIQPG 484 (513)
T ss_pred eCCCCchhHHHHHHHcCCeEEEeCC
Confidence 346889999999999999998643
No 44
>PLN02891 IMP cyclohydrolase
Probab=64.34 E-value=39 Score=31.77 Aligned_cols=63 Identities=13% Similarity=0.087 Sum_probs=47.3
Q ss_pred EEEEeeCCEEEEEEecCcccCCCCcccHHHHHHHHHHHHcCCccCCCceEEe-eCCCcH--HHHHHHHHhCCCEEE
Q 029890 55 GAVVVRNDEVVVSCHNMVLKSTDPTAHAEVTAIREACKKLNQIELSDCEIYA-SCEPCP--MCFGAIHLSRIKRLV 127 (186)
Q Consensus 55 GavIv~~g~ii~~g~N~~~~~~~~~~HAE~~Ai~~a~~~~~~~~l~~~tly~-T~ePC~--mCa~ai~~~gI~rVv 127 (186)
+-|++++++.|+.|.-+++ -.+|-..|+.+|. ..++|+.|-. -..|-+ -|......+||+-||
T Consensus 450 AIV~akd~~tvGIGaGQ~s-----RVda~~iA~~kA~-----~~~~G~vlASDAFFPF~~~D~ve~aa~~Gv~aII 515 (547)
T PLN02891 450 AIVVAKNNRMLGMGSGQPN-----RVESLRIALEKAG-----EEAKGAALASDAFFPFAWNDAVEEACQAGVKVIA 515 (547)
T ss_pred eEEEEeCCeEEEecCCCcc-----HHHHHHHHHHHhc-----cccCCeEEEecccCCCCCCccHHHHHHhCCEEEE
Confidence 4566679999999986543 3466667777763 4567887754 356775 899999999999998
No 45
>cd06222 RnaseH RNase H (RNase HI) is an endonuclease that cleaves the RNA strand of an RNA/DNA hybrid in a not sequence-specific manner. One of the important functions of RNase H is to remove Okazaki fragments during DNA replication. RNase H knockout mice lack mitochondrial DNA replication and die as embryos. The retroviral reverse transcriptase contains an RNase H domain that plays an important role in converting a single stranded retroviral genomic RNA into a dsDNA for integration into host chromosomes. RNase H inhibitors have been explored as an anti-HIV drug target because RNase H inactivation inhibits reverse transcription.
Probab=59.99 E-value=31 Score=23.56 Aligned_cols=54 Identities=22% Similarity=0.208 Sum_probs=31.3
Q ss_pred CcEEEEEeeCC-EEEEEEecCcccCCCCcccHHHHHHHHHHHHcCCccCCCceEEee
Q 029890 52 GPFGAVVVRND-EVVVSCHNMVLKSTDPTAHAEVTAIREACKKLNQIELSDCEIYAS 107 (186)
Q Consensus 52 ~pVGavIv~~g-~ii~~g~N~~~~~~~~~~HAE~~Ai~~a~~~~~~~~l~~~tly~T 107 (186)
.-+|+++.+.+ ........ .. ......+||+.||..+.+..........++|+.
T Consensus 15 ~g~g~v~~~~~~~~~~~~~~-~~-~~~s~~~aEl~al~~al~~~~~~~~~~i~i~~D 69 (130)
T cd06222 15 AGAGVVLRDPGGEVLLSGGL-LG-GNTTNNRAELLALIEALELALELGGKKVNIYTD 69 (130)
T ss_pred eEEEEEEEeCCCeEEEeccc-cC-CCCcHHHHHHHHHHHHHHHHHhCCCceEEEEEC
Confidence 35788888854 33333222 11 234567999999998877643333344455544
No 46
>PRK09710 lar restriction alleviation and modification protein; Reviewed
Probab=57.03 E-value=2.8 Score=28.06 Aligned_cols=21 Identities=24% Similarity=0.572 Sum_probs=15.7
Q ss_pred EeeCCCcHHHHHHHHHhCCCE
Q 029890 105 YASCEPCPMCFGAIHLSRIKR 125 (186)
Q Consensus 105 y~T~ePC~mCa~ai~~~gI~r 125 (186)
|-+++|||.|-...+..+-..
T Consensus 3 ~d~lKPCPFCG~~~~~v~~~~ 23 (64)
T PRK09710 3 YDNVKPCPFCGCPSVTVKAIS 23 (64)
T ss_pred cccccCCCCCCCceeEEEecC
Confidence 668999999987766655433
No 47
>PF14421 LmjF365940-deam: A distinct subfamily of CDD/CDA-like deaminases
Probab=56.86 E-value=54 Score=26.54 Aligned_cols=43 Identities=26% Similarity=0.179 Sum_probs=32.6
Q ss_pred CCcEEEE-Eee-C-------C-EEEEEEecCcccCCCCcccHHHHHHHHHHHH
Q 029890 51 GGPFGAV-VVR-N-------D-EVVVSCHNMVLKSTDPTAHAEVTAIREACKK 93 (186)
Q Consensus 51 ~~pVGav-Iv~-~-------g-~ii~~g~N~~~~~~~~~~HAE~~Ai~~a~~~ 93 (186)
..||=++ +|+ + + ..+..|.|-..+...++.++|+|||-+|...
T Consensus 36 ~kPVlavLlV~~~~~~~~~~~~~~~~~gvN~EvSmPTGSlCSErNAiG~aLAs 88 (193)
T PF14421_consen 36 RKPVLAVLLVDKNHCEVHGDGRPEFVRGVNYEVSMPTGSLCSERNAIGKALAS 88 (193)
T ss_pred CCcEEEEEEEeccccccCCCCCccEEEEEEeEEcCCCcchhHHHHHhhhhhhc
Confidence 4786555 554 2 2 4667899998888899999999999986543
No 48
>PF14427 Pput2613-deam: Pput_2613-like deaminase
Probab=54.74 E-value=20 Score=26.61 Aligned_cols=40 Identities=18% Similarity=0.361 Sum_probs=29.0
Q ss_pred cccHHHHHHHHHHHHcCCccCCCceEEe--eCCCcHHHHHHHHHhC
Q 029890 79 TAHAEVTAIREACKKLNQIELSDCEIYA--SCEPCPMCFGAIHLSR 122 (186)
Q Consensus 79 ~~HAE~~Ai~~a~~~~~~~~l~~~tly~--T~ePC~mCa~ai~~~g 122 (186)
-.|-|..+++...- ..+.|-.|.+ ...||+.|-+++-++-
T Consensus 48 aTHTE~ri~~~l~~----~~~~Gd~m~I~G~ypPC~~CkG~Mr~~s 89 (118)
T PF14427_consen 48 ATHTEARITRDLPL----NQVPGDRMLIDGQYPPCNSCKGKMRRAS 89 (118)
T ss_pred hhhhHhHHHhhcCc----cccCCceEEEeeecCCCchhHHHHHHhh
Confidence 35999998876533 2344655554 7889999999998864
No 49
>PRK13907 rnhA ribonuclease H; Provisional
Probab=54.28 E-value=75 Score=23.05 Aligned_cols=53 Identities=17% Similarity=0.062 Sum_probs=30.0
Q ss_pred cEEEEEeeC-CEEEEEEecCcccCCCCcccHHHHHHHHHHHHcCCccCCCceEEeeCC
Q 029890 53 PFGAVVVRN-DEVVVSCHNMVLKSTDPTAHAEVTAIREACKKLNQIELSDCEIYASCE 109 (186)
Q Consensus 53 pVGavIv~~-g~ii~~g~N~~~~~~~~~~HAE~~Ai~~a~~~~~~~~l~~~tly~T~e 109 (186)
-.|.||.+. +.+...+.- ....-.+||..|+..+.+...........+|+.-+
T Consensus 18 G~G~vi~~~~~~~~~~~~~----~~~tn~~AE~~All~aL~~a~~~g~~~v~i~sDS~ 71 (128)
T PRK13907 18 GAGVFIKGVQPAVQLSLPL----GTMSNHEAEYHALLAALKYCTEHNYNIVSFRTDSQ 71 (128)
T ss_pred EEEEEEEECCeeEEEEecc----cccCCcHHHHHHHHHHHHHHHhCCCCEEEEEechH
Confidence 378887764 443333321 11224689999998887654333344556666433
No 50
>PLN02182 cytidine deaminase
Probab=54.04 E-value=62 Score=28.65 Aligned_cols=62 Identities=10% Similarity=0.105 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHhhcccCCCCCcEEEEEee-CCEEEEEEecCcccCCCCcccHHHHHHHHHHHH
Q 029890 31 DHKFLTRAVEEAYKGVECGDGGPFGAVVVR-NDEVVVSCHNMVLKSTDPTAHAEVTAIREACKK 93 (186)
Q Consensus 31 d~~~m~~A~~~A~~~~~~~~~~pVGavIv~-~g~ii~~g~N~~~~~~~~~~HAE~~Ai~~a~~~ 93 (186)
+......|++.|.++..+.+..|-|.+|.. +|+ |..|+=-.+...+|+.=+-+.||.....+
T Consensus 201 ~~~l~~~Al~AAn~S~APYS~~~SGvAL~~~~G~-vy~G~YaEnAAfNPSL~PlQaALv~~~~~ 263 (339)
T PLN02182 201 CSHLKCKALAAANNSFSPYTESPSGVALLDNDGK-WYRGWYIESVASNPSFGPVQAALVDFVAR 263 (339)
T ss_pred ccHHHHHHHHHHHhccCCccCCCceEEEEeCCCC-EEEeeehhhcccCCCccHHHHHHHHHHHh
Confidence 355779999999999999988899999998 566 46666556666788888878788765443
No 51
>PF05507 MAGP: Microfibril-associated glycoprotein (MAGP); InterPro: IPR008673 This family consists of several mammalian microfibril-associated glycoprotein (MAGP) 1 and 2 proteins. MAGP1 and 2 are components of elastic fibres. MAGP-1 has been proposed to bind a C-terminal region of tropoelastin, the soluble precursor of elastin. MAGP-2 was found to interact with fibrillin-1 and -2, as well as fibulin-1, another component of elastic fibres. This suggests that MAGP-2 may be important in the assembly of microfibrils [].; GO: 0001527 microfibril
Probab=51.14 E-value=15 Score=28.03 Aligned_cols=30 Identities=20% Similarity=0.542 Sum_probs=27.1
Q ss_pred ceEEeeCCCcHHHHHHHHHhCCCEEEEEee
Q 029890 102 CEIYASCEPCPMCFGAIHLSRIKRLVYGAK 131 (186)
Q Consensus 102 ~tly~T~ePC~mCa~ai~~~gI~rVvy~~~ 131 (186)
+-||.-+.||..|...|-...++|+|....
T Consensus 91 tRlySvhrP~kqCi~~lCf~slrRmYvINk 120 (137)
T PF05507_consen 91 TRLYSVHRPCKQCIHQLCFYSLRRMYVINK 120 (137)
T ss_pred eeehhccccHHHHHHHHHhhceeeEEEech
Confidence 578999999999999999999999988654
No 52
>PF02132 RecR: RecR protein; InterPro: IPR023628 The bacterial protein RecR seems to play a role in a recombinational process of DNA repair []. It may act with RecF and RecO. RecR's structure consists of a N-terminal helix-hairpin-helix (HhH) motif, followed by a Cys4 zinc-finger motif, a Toprim domain and a Walker B motif []. This entry represents the C4-type zinc finger.; PDB: 1VDD_D 2V1C_B.
Probab=49.86 E-value=29 Score=20.69 Aligned_cols=30 Identities=27% Similarity=0.455 Sum_probs=18.2
Q ss_pred HHHHHHHHHcCCccCCCceEEeeCCCcHHHHH
Q 029890 85 TAIREACKKLNQIELSDCEIYASCEPCPMCFG 116 (186)
Q Consensus 85 ~Ai~~a~~~~~~~~l~~~tly~T~ePC~mCa~ 116 (186)
.||..+.++ -..+.-|--++..+||+-|+-
T Consensus 8 ~al~~~~~~--i~~C~~C~nlse~~~C~IC~d 37 (41)
T PF02132_consen 8 DALKEAKEN--IKFCSICGNLSEEDPCEICSD 37 (41)
T ss_dssp HHHHHHHHH---EE-SSS--EESSSS-HHHH-
T ss_pred HHHHHHHHc--CCccCCCCCcCCCCcCcCCCC
Confidence 455556555 346778889999999999974
No 53
>PF04244 DPRP: Deoxyribodipyrimidine photo-lyase-related protein; InterPro: IPR007357 This family appears to be related to DNA photolyases.; PDB: 3ZXS_A.
Probab=47.16 E-value=93 Score=25.70 Aligned_cols=76 Identities=12% Similarity=0.187 Sum_probs=34.5
Q ss_pred CCceE-EeeCCC-------cHHHHHHHHHhCCCEEEEEeecchhhhcCchhhHHhhhhccccccccceEEEeccch----
Q 029890 100 SDCEI-YASCEP-------CPMCFGAIHLSRIKRLVYGAKAEAAIAIGFDDFIADALRGTGFYQKAQLEIKKADGT---- 167 (186)
Q Consensus 100 ~~~tl-y~T~eP-------C~mCa~ai~~~gI~rVvy~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~v~v~~~~~~---- 167 (186)
+|.++ |+++.. -.-....|...|+.+|++..+.+..- ...+ ..+.++.||.+.+++.+
T Consensus 61 ~G~~V~Y~~~~~~~~~~s~~~~L~~~~~~~~~~~~~~~~P~d~~l--------~~~l--~~~~~~~~i~~~~~~~~~Fl~ 130 (224)
T PF04244_consen 61 KGFRVHYIELDDPENTQSFEDALARALKQHGIDRLHVMEPGDYRL--------EQRL--ESLAQQLGIPLEVLEDPHFLT 130 (224)
T ss_dssp TT--EEEE-TT-TT--SSHHHHHHHHHHHH----EEEE--S-HHH--------HHHH--HH----SSS-EEEE--TTSSS
T ss_pred CCCEEEEEeCCCccccccHHHHHHHHHHHcCCCEEEEECCCCHHH--------HHHH--HhhhcccCCceEEeCCCCccC
Confidence 46655 887773 24566778889999999998876431 1111 12345667777654333
Q ss_pred ------------HHHHHHHHHHHhhccccc
Q 029890 168 ------------GAAIAEQVFEKTKAKFQL 185 (186)
Q Consensus 168 ------------~~~l~~~~~~~~~~~f~~ 185 (186)
-.-.|+.||..++.++.+
T Consensus 131 s~~~f~~~~~~~k~~~Me~FYR~mRkr~~I 160 (224)
T PF04244_consen 131 SREEFAEWFEGRKRLRMEYFYREMRKRFGI 160 (224)
T ss_dssp -HHHHHHHHTT-SS--HHHHHHHHHHHHTT
T ss_pred CHHHHHHHHccCCceeHHHHHHHHHHHcCc
Confidence 345677777777777655
No 54
>PF14428 SCP1201-deam: SCP1.201-like deaminase
Probab=45.85 E-value=24 Score=26.91 Aligned_cols=40 Identities=15% Similarity=0.186 Sum_probs=30.2
Q ss_pred CcccHHHHHHHHHHHHcCCccCCCceEEee-CCCcHH---HHHHHHHh
Q 029890 78 PTAHAEVTAIREACKKLNQIELSDCEIYAS-CEPCPM---CFGAIHLS 121 (186)
Q Consensus 78 ~~~HAE~~Ai~~a~~~~~~~~l~~~tly~T-~ePC~m---Ca~ai~~~ 121 (186)
...|.|..+-..-.+ ...+..+||++ ..||.- |..++-..
T Consensus 67 ~~~HVE~k~Aa~Mr~----~g~~~a~vvIN~n~pC~~~~gC~~~l~~i 110 (135)
T PF14428_consen 67 AASHVEGKAAAWMRR----NGIKHATVVINPNGPCGGRDGCDQLLPAI 110 (135)
T ss_pred chhhhhHHHHHHHHH----cCCeEEEEEEeCCCCCCCccCHHHHHHHh
Confidence 367999987755433 35678999999 999988 98876543
No 55
>PRK00611 putative disulfide oxidoreductase; Provisional
Probab=41.81 E-value=12 Score=28.66 Aligned_cols=11 Identities=36% Similarity=1.090 Sum_probs=8.8
Q ss_pred eeCCCcHHHHH
Q 029890 106 ASCEPCPMCFG 116 (186)
Q Consensus 106 ~T~ePC~mCa~ 116 (186)
.-++||++|-.
T Consensus 31 ~gl~PC~LCiy 41 (135)
T PRK00611 31 LNVEPCVLCYY 41 (135)
T ss_pred cCCCCchHHHH
Confidence 36899999964
No 56
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B.
Probab=39.80 E-value=52 Score=18.04 Aligned_cols=19 Identities=16% Similarity=0.051 Sum_probs=13.2
Q ss_pred cEEEEEeeCCEEEEEEecC
Q 029890 53 PFGAVVVRNDEVVVSCHNM 71 (186)
Q Consensus 53 pVGavIv~~g~ii~~g~N~ 71 (186)
-..++|.++|++.+.|.|.
T Consensus 9 ~ht~al~~~g~v~~wG~n~ 27 (30)
T PF13540_consen 9 YHTCALTSDGEVYCWGDNN 27 (30)
T ss_dssp SEEEEEE-TTEEEEEE--T
T ss_pred CEEEEEEcCCCEEEEcCCc
Confidence 3567888899999999984
No 57
>PRK04307 putative disulfide oxidoreductase; Provisional
Probab=36.88 E-value=14 Score=30.59 Aligned_cols=12 Identities=33% Similarity=0.805 Sum_probs=9.7
Q ss_pred EeeCCCcHHHHH
Q 029890 105 YASCEPCPMCFG 116 (186)
Q Consensus 105 y~T~ePC~mCa~ 116 (186)
+.-++||+||..
T Consensus 47 vlgL~PC~LCIy 58 (218)
T PRK04307 47 YLYMAPCEQCVY 58 (218)
T ss_pred hcCCCccHHHHH
Confidence 357999999964
No 58
>PF05582 Peptidase_U57: YabG peptidase U57; InterPro: IPR008764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of B. subtilis [].
Probab=36.84 E-value=2.8e+02 Score=24.01 Aligned_cols=97 Identities=28% Similarity=0.356 Sum_probs=62.9
Q ss_pred hHHHHHHHHHHHHHhhcccCCCCCc-EEEEEee---------------CCEEEEEEecCcccCC---------CCcccHH
Q 029890 29 DRDHKFLTRAVEEAYKGVECGDGGP-FGAVVVR---------------NDEVVVSCHNMVLKST---------DPTAHAE 83 (186)
Q Consensus 29 ~~d~~~m~~A~~~A~~~~~~~~~~p-VGavIv~---------------~g~ii~~g~N~~~~~~---------~~~~HAE 83 (186)
+-|..||+.|+++=++- + .| +|-.+-. .+=+|-+||....... ..+.|=
T Consensus 112 DGD~~YL~~Cl~~Ykql---~--i~a~G~~~~E~eqp~~i~~Ll~~~~PDIlViTGHD~~~K~~~d~~dl~~YrnSkyF- 185 (287)
T PF05582_consen 112 DGDEEYLNKCLKVYKQL---G--IPAVGIHVPEKEQPEKIYRLLEEYRPDILVITGHDGYLKNKKDYSDLNNYRNSKYF- 185 (287)
T ss_pred cCCHHHHHHHHHHHHHc---C--CceEEEEechHHhhHHHHHHHHHcCCCEEEEeCchhhhcCCCChhhhhhhhccHHH-
Confidence 35788999999977654 2 55 5555541 3567888998754432 122232
Q ss_pred HHHHHHHHHHcCCccCCCceEEeeCCCcHHHHHHHHHhC------CCEEEEEeecchh
Q 029890 84 VTAIREACKKLNQIELSDCEIYASCEPCPMCFGAIHLSR------IKRLVYGAKAEAA 135 (186)
Q Consensus 84 ~~Ai~~a~~~~~~~~l~~~tly~T~ePC~mCa~ai~~~g------I~rVvy~~~~~~~ 135 (186)
+.|++.|-+ + ...+.+..+|. =-|-.|-.||+.+| .+||-..+-||-.
T Consensus 186 VeaV~~aR~-~-ep~~D~LVIfA--GACQS~fEall~AGANFASSP~RVlIHalDPV~ 239 (287)
T PF05582_consen 186 VEAVKEARK-Y-EPNLDDLVIFA--GACQSHFEALLEAGANFASSPKRVLIHALDPVF 239 (287)
T ss_pred HHHHHHHHh-c-CCCcccEEEEc--chhHHHHHHHHHcCccccCCccceEEeccCcce
Confidence 556655433 2 33455556554 45999999999999 6788888877743
No 59
>PF05528 Coronavirus_5: Coronavirus gene 5 protein; InterPro: IPR008458 Infectious bronchitis virus, a member of Coronaviridae family, has a single-stranded positive-sense RNA genome, which is 27 kb in length. Gene 5 contains two (5a and 5b) open reading frames. The function of the 5a and 5b proteins is unknown [].
Probab=36.59 E-value=22 Score=24.40 Aligned_cols=20 Identities=35% Similarity=0.951 Sum_probs=14.4
Q ss_pred CceEEe----eCCCcHHHHHHHHH
Q 029890 101 DCEIYA----SCEPCPMCFGAIHL 120 (186)
Q Consensus 101 ~~tly~----T~ePC~mCa~ai~~ 120 (186)
+|.-|+ +.|||+-|+....+
T Consensus 26 dcvyflN~aGqaE~Cp~CtsLvf~ 49 (82)
T PF05528_consen 26 DCVYFLNKAGQAEPCPACTSLVFR 49 (82)
T ss_pred ceEEeecccCccccCcchhhhhcc
Confidence 355555 68999999986544
No 60
>COG0328 RnhA Ribonuclease HI [DNA replication, recombination, and repair]
Probab=35.12 E-value=1.5e+02 Score=23.17 Aligned_cols=63 Identities=22% Similarity=0.362 Sum_probs=34.5
Q ss_pred CCCCCc--EEEEEee-CCEE-EEEEecCcccCCCCcccHHHHHHHHHHHHcCCccCCCceEEeeCCCcHHHH
Q 029890 48 CGDGGP--FGAVVVR-NDEV-VVSCHNMVLKSTDPTAHAEVTAIREACKKLNQIELSDCEIYASCEPCPMCF 115 (186)
Q Consensus 48 ~~~~~p--VGavIv~-~g~i-i~~g~N~~~~~~~~~~HAE~~Ai~~a~~~~~~~~l~~~tly~T~ePC~mCa 115 (186)
.++|.| .|+||.. +++. ++.+... . --.-+|+.|+..|.+.+........+||+--+=+.-..
T Consensus 13 ~gNpG~gG~g~vl~~~~~~~~~s~~~~~--t---TNNraEl~A~i~AL~~l~~~~~~~v~l~tDS~yv~~~i 79 (154)
T COG0328 13 LGNPGPGGWGAVLRYGDGEKELSGGEGR--T---TNNRAELRALIEALEALKELGACEVTLYTDSKYVVEGI 79 (154)
T ss_pred CCCCCCceEEEEEEcCCceEEEeeeeec--c---cChHHHHHHHHHHHHHHHhcCCceEEEEecHHHHHHHH
Confidence 344445 7777775 4444 3333321 1 12358888888887775433344566676655443333
No 61
>KOG1783 consensus Small nuclear ribonucleoprotein F [RNA processing and modification]
Probab=34.55 E-value=75 Score=21.83 Aligned_cols=37 Identities=16% Similarity=0.269 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHhhcccCCCCCcEEEEEeeCCEEEEEE
Q 029890 32 HKFLTRAVEEAYKGVECGDGGPFGAVVVRNDEVVVSC 68 (186)
Q Consensus 32 ~~~m~~A~~~A~~~~~~~~~~pVGavIv~~g~ii~~g 68 (186)
.-||..|++.+...+.-.-++.+|-+.++.++|+...
T Consensus 37 DgymNiaLe~tee~~ngql~n~ygdaFirGnnVlyIs 73 (77)
T KOG1783|consen 37 DGYMNIALESTEEYVNGQLKNKYGDAFIRGNNVLYIS 73 (77)
T ss_pred hhHHHHHHHHHHHHhcCcccccccceeeccccEEEEE
Confidence 3599999999988774333456999999988887654
No 62
>PRK03113 putative disulfide oxidoreductase; Provisional
Probab=33.56 E-value=19 Score=27.58 Aligned_cols=10 Identities=40% Similarity=1.135 Sum_probs=8.4
Q ss_pred eCCCcHHHHH
Q 029890 107 SCEPCPMCFG 116 (186)
Q Consensus 107 T~ePC~mCa~ 116 (186)
-++||++|-.
T Consensus 33 gl~PC~LCi~ 42 (139)
T PRK03113 33 KFEPCVLCWY 42 (139)
T ss_pred CCCCCHHHHH
Confidence 6899999964
No 63
>PF04805 Pox_E10: E10-like protein conserved region; InterPro: IPR006890 This entry represents a family of probable FAD-linked sulphydryl oxidases found in poxviruses.; GO: 0016972 thiol oxidase activity, 0055114 oxidation-reduction process
Probab=32.45 E-value=33 Score=23.21 Aligned_cols=17 Identities=29% Similarity=0.448 Sum_probs=12.4
Q ss_pred eeCCCcHHHHHHHHHhC
Q 029890 106 ASCEPCPMCFGAIHLSR 122 (186)
Q Consensus 106 ~T~ePC~mCa~ai~~~g 122 (186)
++.=||++|...-..+=
T Consensus 13 ~~tLPC~~Cr~HA~~ai 29 (70)
T PF04805_consen 13 CSTLPCPECRIHAKEAI 29 (70)
T ss_pred HhcCCCHHHHHHHHHHH
Confidence 35569999998766653
No 64
>PF08098 ATX_III: Anemonia sulcata toxin III family; InterPro: IPR012509 This entry occurs within the Anemonia sulcata toxin III (ATX III) neurotoxin family. ATX III is a neurotoxin that is produced by sea anemone; it adopts a compact structure containing four reverse turns and two other chain reversals, but no regular alpha-helix or beta-sheet. A hydrophobic patch found on the surface of the peptide may constitute part of the sodium channel binding surface [].; GO: 0019871 sodium channel inhibitor activity, 0009405 pathogenesis, 0042151 nematocyst; PDB: 1ANS_A.
Probab=32.28 E-value=17 Score=19.79 Aligned_cols=9 Identities=67% Similarity=1.575 Sum_probs=1.2
Q ss_pred eCCCcHHHH
Q 029890 107 SCEPCPMCF 115 (186)
Q Consensus 107 T~ePC~mCa 115 (186)
|.-||.||-
T Consensus 2 sCCPCamc~ 10 (27)
T PF08098_consen 2 SCCPCAMCK 10 (27)
T ss_dssp -S--S----
T ss_pred cccccccce
Confidence 345777773
No 65
>smart00552 ADEAMc tRNA-specific and double-stranded RNA adenosine deaminase (RNA-specific editase).
Probab=29.57 E-value=38 Score=30.23 Aligned_cols=38 Identities=29% Similarity=0.284 Sum_probs=25.0
Q ss_pred ccHHHHHHHHHHHHcC----------------------CccCC---CceEEeeCCCcHHHHHH
Q 029890 80 AHAEVTAIREACKKLN----------------------QIELS---DCEIYASCEPCPMCFGA 117 (186)
Q Consensus 80 ~HAE~~Ai~~a~~~~~----------------------~~~l~---~~tly~T~ePC~mCa~a 117 (186)
-|||+.|.|-..+-+. .+.|+ ...||+|.-||.-|.+-
T Consensus 71 ~HAEVlArR~f~r~l~~el~~~~~~~~~sif~~~~~~~~~~Lk~~v~lhlYiS~~PCGdAs~~ 133 (374)
T smart00552 71 CHAEILARRGFLRFLYSELQLFNSSSEDSIFEKNKEGGKYKLKSNVLFHLYISTLPCGDASIF 133 (374)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhccCCCceEEECCCCCceEeCCCcEEEEEeccCCccccccc
Confidence 4999999986543210 12233 25789999999776654
No 66
>PF01808 AICARFT_IMPCHas: AICARFT/IMPCHase bienzyme; InterPro: IPR002695 This is a family of bifunctional enzymes catalysing the last two steps in de novo purine biosynthesis. The bifunctional enzyme is found in both prokaryotes and eukaryotes. The second last step is catalysed by 5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase 2.1.2.3 from EC (AICARFT), this enzyme catalyses the formylation of AICAR with 10-formyl-tetrahydrofolate to yield FAICAR and tetrahydrofolate []. The last step is catalysed by IMP (Inosine monophosphate) cyclohydrolase 3.5.4.10 from EC (IMPCHase), cyclizing FAICAR (5-formylaminoimidazole-4-carboxamide ribonucleotide) to IMP [].; GO: 0003937 IMP cyclohydrolase activity, 0004643 phosphoribosylaminoimidazolecarboxamide formyltransferase activity, 0006164 purine nucleotide biosynthetic process; PDB: 1ZCZ_A 1PL0_D 1PKX_C 1P4R_B 1G8M_B 2IU3_B 2B1I_A 2B1G_D 1OZ0_B 1M9N_B ....
Probab=29.56 E-value=1e+02 Score=26.99 Aligned_cols=31 Identities=19% Similarity=0.181 Sum_probs=20.6
Q ss_pred EEEEeeCCEEEEEEecCcccCCCCcccHHHHHHHHH
Q 029890 55 GAVVVRNDEVVVSCHNMVLKSTDPTAHAEVTAIREA 90 (186)
Q Consensus 55 GavIv~~g~ii~~g~N~~~~~~~~~~HAE~~Ai~~a 90 (186)
+-|++++|+.|+.|.-+++ -..|-..|+.+|
T Consensus 285 AIv~ak~~~tvGIGaGQ~s-----RVda~~iA~~KA 315 (315)
T PF01808_consen 285 AIVLAKDGQTVGIGAGQMS-----RVDAARIAIEKA 315 (315)
T ss_dssp EEEEEETTEEEEEEESSSS-----HHHHHHHHHHHH
T ss_pred eEEEEeCCeEEEeCCCCcc-----hHHHHHHHHhhC
Confidence 4577789999999996553 234445555543
No 67
>PTZ00119 40S ribosomal protein S15; Provisional
Probab=29.28 E-value=85 Score=27.10 Aligned_cols=52 Identities=15% Similarity=0.234 Sum_probs=33.1
Q ss_pred HHHHHHHHHhCCCEEEEEeecchhhhcCchhhHHhhhhccccccccceEEEeccch-HHHHHHHHHHHhhcccc
Q 029890 112 PMCFGAIHLSRIKRLVYGAKAEAAIAIGFDDFIADALRGTGFYQKAQLEIKKADGT-GAAIAEQVFEKTKAKFQ 184 (186)
Q Consensus 112 ~mCa~ai~~~gI~rVvy~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~v~v~~~~~~-~~~l~~~~~~~~~~~f~ 184 (186)
...-..|...||++|.|..++..... .-|....+|++ |.-++++ +.|+++||
T Consensus 178 erY~~lIkkLGLRkv~f~~~~~~~~~-------------------k~i~~~~vdgd~~~~~~~q--~lw~~r~r 230 (302)
T PTZ00119 178 ELYKHTCNLLKIKCILFAIPDSRDRS-------------------KAINAAAVDGDRCKFLIRQ--KLWKGKYR 230 (302)
T ss_pred HHHHHHHHHhCCceEEeecccccChh-------------------hccchheeccchhHHHHHH--HHHhccCC
Confidence 45566788999999999988764321 12332233444 5555555 56888886
No 68
>TIGR00159 conserved hypothetical protein TIGR00159. These proteins have no detectable global or local homology to any protein of known function. Members are restricted to the bacteria and found broadly in lineages other than the Proteobacteria.
Probab=28.90 E-value=58 Score=26.89 Aligned_cols=34 Identities=26% Similarity=0.395 Sum_probs=22.9
Q ss_pred EEEEEeeCCEEEEEEecCccc-----CCCCcccHHHHHH
Q 029890 54 FGAVVVRNDEVVVSCHNMVLK-----STDPTAHAEVTAI 87 (186)
Q Consensus 54 VGavIv~~g~ii~~g~N~~~~-----~~~~~~HAE~~Ai 87 (186)
=||||+++|+|++.|+=-... ..-+++|.-...|
T Consensus 126 DGAvII~~~rI~aA~~~Lpls~~~~~~~lGtRHRAA~Gi 164 (211)
T TIGR00159 126 DGAVIIRDNKIVAAGSYLPLSEQSISKSLGTRHRAALGI 164 (211)
T ss_pred CcEEEEECCEEEEEEEEecCCCCCCCCccChHHHHHHHH
Confidence 599999999999998732222 2345778644444
No 69
>PRK03922 hypothetical protein; Provisional
Probab=28.71 E-value=50 Score=24.49 Aligned_cols=39 Identities=33% Similarity=0.392 Sum_probs=30.6
Q ss_pred cccHHHHHHHHHHHHcCCccCCCceEEeeCCCcHHHHHH
Q 029890 79 TAHAEVTAIREACKKLNQIELSDCEIYASCEPCPMCFGA 117 (186)
Q Consensus 79 ~~HAE~~Ai~~a~~~~~~~~l~~~tly~T~ePC~mCa~a 117 (186)
..-|--.||.++++++++..++=..+=+-..+||.|-..
T Consensus 20 ~dDAI~iAIseaGkrLn~~~l~yVeievG~~~cP~cge~ 58 (113)
T PRK03922 20 VDDAIGVAISEAGKRLNPEDLDYVEVEVGLTICPKCGEP 58 (113)
T ss_pred HHHHHHHHHHHHHhhcCcccCCeEEEecCcccCCCCCCc
Confidence 456888999999999988777766776777788888653
No 70
>PF02137 A_deamin: Adenosine-deaminase (editase) domain; InterPro: IPR002466 Editase (3.5 from EC) are enzymes that alter mRNA by catalyzing the site-selective deamination of adenosine residue into inosine residue. The editase domain contains the active site and binds three Zn atoms []. Several editases share a common global arrangement of domains, from N to C terminus: two 'double-stranded RNA-specific adenosine deaminase' (DRADA) repeat domains (IPR000607 from INTERPRO), followed by three 'double-stranded RNA binding' (DsRBD) domains (IPR001159 from INTERPRO), followed by the editase domain. Other editases have a simplified domains structure with no DRADA_REP and possibly fewer DSRBD domains. Editase that deaminate cytidine are not detected by this signature.; GO: 0003723 RNA binding, 0004000 adenosine deaminase activity, 0006396 RNA processing; PDB: 1ZY7_B.
Probab=26.42 E-value=56 Score=28.40 Aligned_cols=20 Identities=25% Similarity=0.160 Sum_probs=12.6
Q ss_pred ceEEeeCCCcHHHHHHHHHh
Q 029890 102 CEIYASCEPCPMCFGAIHLS 121 (186)
Q Consensus 102 ~tly~T~ePC~mCa~ai~~~ 121 (186)
..||+|.-||.-+++-....
T Consensus 76 lhlY~S~~PCGdAsi~~~~~ 95 (343)
T PF02137_consen 76 LHLYISQAPCGDASIFPLSS 95 (343)
T ss_dssp EEEEESS--TTHHHHS-TT-
T ss_pred EEEEeccCccCccccccccc
Confidence 57899999998777765555
No 71
>PF14354 Lar_restr_allev: Restriction alleviation protein Lar
Probab=25.20 E-value=19 Score=22.97 Aligned_cols=12 Identities=42% Similarity=0.930 Sum_probs=8.4
Q ss_pred eCCCcHHHHHHH
Q 029890 107 SCEPCPMCFGAI 118 (186)
Q Consensus 107 T~ePC~mCa~ai 118 (186)
.|-|||.|-.+-
T Consensus 2 ~LkPCPFCG~~~ 13 (61)
T PF14354_consen 2 ELKPCPFCGSAD 13 (61)
T ss_pred CCcCCCCCCCcc
Confidence 478999994343
No 72
>TIGR02855 spore_yabG sporulation peptidase YabG. Members of this family are the protein YabG, demonstrated for Bacillus subtilis to be an endopeptidase able to release N-terminal peptides from a number of sporulation proteins, including CotT, CotF, and SpoIVA. It appears to be expressed under control of sigma-K.
Probab=24.58 E-value=4.6e+02 Score=22.64 Aligned_cols=96 Identities=24% Similarity=0.289 Sum_probs=62.5
Q ss_pred hHHHHHHHHHHHHHhhcccCCCCCc-EEEEEee---------------CCEEEEEEecCcccCC---------CCcccHH
Q 029890 29 DRDHKFLTRAVEEAYKGVECGDGGP-FGAVVVR---------------NDEVVVSCHNMVLKST---------DPTAHAE 83 (186)
Q Consensus 29 ~~d~~~m~~A~~~A~~~~~~~~~~p-VGavIv~---------------~g~ii~~g~N~~~~~~---------~~~~HAE 83 (186)
+-|..||+.|+++=++- + .| +|-.+-. .+=+|-+||....... ..+.|=
T Consensus 111 DGD~~YL~~Cl~~Ykql---~--i~a~G~~~~E~eqp~~i~~Ll~~~~PDIlViTGHD~~~K~~~d~~dl~~YrnSkyF- 184 (283)
T TIGR02855 111 DGDPEYLRKCLKLYKKI---G--VPVVGIHCKEKEMPEKVLDLIEEVRPDILVITGHDAYSKNKGNYMDLNAYRHSKYF- 184 (283)
T ss_pred cCCHHHHHHHHHHHHHh---C--CceEEEEecchhchHHHHHHHHHhCCCEEEEeCchhhhcCCCChhhhhhhhhhHHH-
Confidence 45788999999987664 2 55 5666542 3567888998764321 122232
Q ss_pred HHHHHHHHHHcCCccCCCceEEeeCCCcHHHHHHHHHhC------CCEEEEEeecch
Q 029890 84 VTAIREACKKLNQIELSDCEIYASCEPCPMCFGAIHLSR------IKRLVYGAKAEA 134 (186)
Q Consensus 84 ~~Ai~~a~~~~~~~~l~~~tly~T~ePC~mCa~ai~~~g------I~rVvy~~~~~~ 134 (186)
+.|++.|-+ + ...+.+..+|. --|-.|-.+|+.+| ..||-+.+-||-
T Consensus 185 VeaVk~aR~-y-~~~~D~LVIFA--GACQS~yEall~AGANFASSP~RVlIHalDPV 237 (283)
T TIGR02855 185 VETVREARK-Y-VPSLDQLVIFA--GACQSHFESLIRAGANFASSPSRVNIHALDPV 237 (283)
T ss_pred HHHHHHHHh-c-CCCcccEEEEc--chhHHHHHHHHHcCccccCCccceEEeccCcc
Confidence 556665433 2 22455666554 45999999999999 678877777774
No 73
>COG0138 PurH AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful) [Nucleotide transport and metabolism]
Probab=24.56 E-value=5.9e+02 Score=23.89 Aligned_cols=88 Identities=13% Similarity=0.077 Sum_probs=58.9
Q ss_pred ChHHHHHHHHHHHHHhhcccCCCCCcEEEEEeeCCEEEEEEecCcccCCCCcccHHHHHHHHHHHHcCCccCCCceEEe-
Q 029890 28 KDRDHKFLTRAVEEAYKGVECGDGGPFGAVVVRNDEVVVSCHNMVLKSTDPTAHAEVTAIREACKKLNQIELSDCEIYA- 106 (186)
Q Consensus 28 ~~~d~~~m~~A~~~A~~~~~~~~~~pVGavIv~~g~ii~~g~N~~~~~~~~~~HAE~~Ai~~a~~~~~~~~l~~~tly~- 106 (186)
++....=|.-|-..++..+. + +-|+.+||..|+.|.-+++ -.|+-..|+.+|.+. ...+.|+.|=.
T Consensus 396 t~~e~~dl~Fawkv~k~vKS--N----aIv~akd~~TvGiGaGQ~s-----RV~sariA~~kA~~~--~~~~~Gav~ASD 462 (515)
T COG0138 396 TEQELEDLLFAWKVVKHVKS--N----AIVYAKDGQTVGIGAGQMS-----RVDSARIAAEKAGDA--GLRAHGAVLASD 462 (515)
T ss_pred CHHHHHHHHHHHHHHhHhcc--c----eEEEEcCCeEEEecCCccc-----hHHHHHHHHHHHHHh--hhhccCcEEeec
Confidence 33333445555555543322 1 3455569999999986553 457778888888765 23345777765
Q ss_pred eCCCcHHHHHHHHHhCCCEEEE
Q 029890 107 SCEPCPMCFGAIHLSRIKRLVY 128 (186)
Q Consensus 107 T~ePC~mCa~ai~~~gI~rVvy 128 (186)
-..|-+-=......+||+-|+=
T Consensus 463 AFFPF~D~i~~aA~aGi~aIIq 484 (515)
T COG0138 463 AFFPFPDGIDAAAKAGIKAIIQ 484 (515)
T ss_pred ccCCCcchHHHHHHcCCeEEEC
Confidence 4678888999999999999993
No 74
>cd04679 Nudix_Hydrolase_20 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=24.52 E-value=2.6e+02 Score=19.73 Aligned_cols=42 Identities=17% Similarity=0.180 Sum_probs=27.0
Q ss_pred EEEEEee-CCEEEEEEecCccc---CC------CCcccHHHHHHHHHHHHcC
Q 029890 54 FGAVVVR-NDEVVVSCHNMVLK---ST------DPTAHAEVTAIREACKKLN 95 (186)
Q Consensus 54 VGavIv~-~g~ii~~g~N~~~~---~~------~~~~HAE~~Ai~~a~~~~~ 95 (186)
+|++|++ +|+|+..-.+..+. .. ++..-.+..|+|.+.+..+
T Consensus 5 ~~~~i~~~~~~vLL~~r~~~~~~~~w~lPgG~ve~gEt~~eaa~RE~~EEtG 56 (125)
T cd04679 5 CGAAILRDDGKLLLVKRLRAPEAGHWGIPGGKVDWMEAVEDAVVREIEEETG 56 (125)
T ss_pred EEEEEECCCCEEEEEEecCCCCCCeEeCCeeeccCCCCHHHHHHHHHHHHHC
Confidence 8899998 58888775443211 11 2233578889998888754
No 75
>KOG1682 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]
Probab=24.52 E-value=94 Score=25.96 Aligned_cols=47 Identities=21% Similarity=0.303 Sum_probs=29.7
Q ss_pred HHHHHHHhhcccCCCCCcEEEEEee-CCEEEEEEecCcccCCCC--cccHHH
Q 029890 36 TRAVEEAYKGVECGDGGPFGAVVVR-NDEVVVSCHNMVLKSTDP--TAHAEV 84 (186)
Q Consensus 36 ~~A~~~A~~~~~~~~~~pVGavIv~-~g~ii~~g~N~~~~~~~~--~~HAE~ 84 (186)
--++.-+....... .-+-|||+. +|+|.+.|||-..-..++ -.|||+
T Consensus 61 ~~~Lq~~ll~d~d~--~dlr~viita~GkifSaGH~LKELt~e~g~d~haev 110 (287)
T KOG1682|consen 61 MCALQDALLKDKDN--LDLRCVIITAQGKIFSAGHNLKELTNEPGSDIHAEV 110 (287)
T ss_pred HHHHHHHHhhcccc--cceeEEEEecCCccccccccHHHhhcCccchHHHHH
Confidence 33444444433322 457888887 899999999964433333 579885
No 76
>PF02457 DisA_N: DisA bacterial checkpoint controller nucleotide-binding; InterPro: IPR003390 The DisA protein is a bacterial checkpoint protein that dimerises into an octameric complex. The protein consists of three distinct domains. This domain is the first and is a globular, nucleotide-binding region; the next 146-289 residues constitute the DisA-linker family, IPR018906 from INTERPRO that consists of an elongated bundle of three alpha helices (alpha-6, alpha-10, and alpha-11), one side of which carries an additional three helices (alpha7-9), which thus forms a spine like-linker between domains 1 and 3. The C-terminal residues, of domain 3, are represented by family HHH, IPR000445 from INTERPRO the specific DNA-binding domain. The octameric complex thus has structurally linked nucleotide-binding and DNA-binding HhH domains and the nucleotide-binding domains are bound to a cyclic di-adenosine phosphate such that DisA is a specific di-adenylate cyclase. The di-adenylate cyclase activity is strongly suppressed by binding to branched DNA, but not to duplex or single-stranded DNA, suggesting a role for DisA as a monitor of the presence of stalled replication forks or recombination intermediates via DNA structure-modulated c-di-AMP synthesis.; PDB: 3C1Z_A 3C23_A 3C1Y_A 3C21_A 2FB5_A.
Probab=23.82 E-value=48 Score=24.78 Aligned_cols=18 Identities=22% Similarity=0.364 Sum_probs=15.5
Q ss_pred EEEEEeeCCEEEEEEecC
Q 029890 54 FGAVVVRNDEVVVSCHNM 71 (186)
Q Consensus 54 VGavIv~~g~ii~~g~N~ 71 (186)
=||||+++|+|++.|.+-
T Consensus 56 DGAviI~~~~i~aag~~l 73 (122)
T PF02457_consen 56 DGAVIIDGGRIVAAGAIL 73 (122)
T ss_dssp SSEEEEETTCCEEEEEEE
T ss_pred CceEEEECCeEEEEEEEe
Confidence 499999999999998763
No 77
>COG1624 Uncharacterized conserved protein [Function unknown]
Probab=23.57 E-value=77 Score=26.76 Aligned_cols=34 Identities=24% Similarity=0.366 Sum_probs=22.2
Q ss_pred EEEEEeeCCEEEEEEecCc------ccCCCCcccHHHHHH
Q 029890 54 FGAVVVRNDEVVVSCHNMV------LKSTDPTAHAEVTAI 87 (186)
Q Consensus 54 VGavIv~~g~ii~~g~N~~------~~~~~~~~HAE~~Ai 87 (186)
=||+|+++++|++.|.=-. .+..-+++|--..+|
T Consensus 173 DGAvII~~~kIvaAg~yLpls~~~~i~k~lGtRHrAAlgi 212 (247)
T COG1624 173 DGAVIIRDNKIVAAGRYLPLSEKSLISKGLGTRHRAALGI 212 (247)
T ss_pred cceEEEeCCEEEEEEEEeccCCCCCcCccccHHHHHhhcc
Confidence 5999999889999875211 223346778544444
No 78
>PF02600 DsbB: Disulfide bond formation protein DsbB; InterPro: IPR003752 Disulphide bonds contribute to folding, maturation, stability, and regulation of proteins, in particular those localized out of the cytosol. Oxidation of selected pairs of cysteines to disulphide in vivo requires cellular factors present in the bacterial periplasmic space or in the endoplasmic reticulum of eukaryotic cells [, ]. DsbB is a protein component of the pathway that leads to disulphide bond formation in periplasmic proteins of Escherichia coli and other bacteria. The DsbB protein oxidises the periplasmic protein DsbA which in turn oxidises cysteines in other periplasmic proteins in order to make disulphide bonds []. DsbB acts as a redox potential transducer across the cytoplasmic membrane. It is a membrane protein which spans the membrane four times with both the N- and C-termini of the protein are in the cytoplasm. Each of the periplasmic domains of the protein has two essential cysteines. The two cysteines in the first periplasmic domain are in a Cys-X-Y-Cys configuration that is characteristic of the active site of other proteins involved in disulphide bond formation, including DsbA and protein disulphide isomerase []. This entry also includes disulphide bond formation protein BdbC from Bacillus subtilis which functionally corresponds to the well-characterised E. coli DsbB []. ; GO: 0015035 protein disulfide oxidoreductase activity, 0016020 membrane; PDB: 2ZUP_B 3E9J_F 2ZUQ_D 2K74_A 2LEG_B 2HI7_B 2K73_A 2L0O_A 2L0M_A 2L0N_A ....
Probab=23.45 E-value=28 Score=26.57 Aligned_cols=11 Identities=36% Similarity=1.162 Sum_probs=5.7
Q ss_pred eeCCCcHHHHH
Q 029890 106 ASCEPCPMCFG 116 (186)
Q Consensus 106 ~T~ePC~mCa~ 116 (186)
.-.+||++|..
T Consensus 29 lg~~PC~LC~~ 39 (156)
T PF02600_consen 29 LGLQPCPLCLY 39 (156)
T ss_dssp TTT---SHHCC
T ss_pred cCCCCcHHHHH
Confidence 45899999963
No 79
>PRK01749 disulfide bond formation protein B; Provisional
Probab=23.07 E-value=38 Score=26.83 Aligned_cols=11 Identities=36% Similarity=0.818 Sum_probs=9.0
Q ss_pred eeCCCcHHHHH
Q 029890 106 ASCEPCPMCFG 116 (186)
Q Consensus 106 ~T~ePC~mCa~ 116 (186)
.-++||++|..
T Consensus 36 lgl~PC~LCi~ 46 (176)
T PRK01749 36 MLLKPCVMCIY 46 (176)
T ss_pred cCCCCcHhHHH
Confidence 46899999964
No 80
>PRK02110 disulfide bond formation protein B; Provisional
Probab=23.00 E-value=39 Score=26.60 Aligned_cols=11 Identities=36% Similarity=1.126 Sum_probs=8.7
Q ss_pred eeCCCcHHHHH
Q 029890 106 ASCEPCPMCFG 116 (186)
Q Consensus 106 ~T~ePC~mCa~ 116 (186)
.-.+||++|..
T Consensus 36 ~g~~PC~LCi~ 46 (169)
T PRK02110 36 KGEDPCPLCII 46 (169)
T ss_pred cCCCCCHHHHH
Confidence 36899999964
No 81
>PRK04388 disulfide bond formation protein B; Provisional
Probab=22.59 E-value=39 Score=26.57 Aligned_cols=11 Identities=45% Similarity=1.153 Sum_probs=8.9
Q ss_pred eeCCCcHHHHH
Q 029890 106 ASCEPCPMCFG 116 (186)
Q Consensus 106 ~T~ePC~mCa~ 116 (186)
.-++||++|..
T Consensus 33 ~gl~PC~LCi~ 43 (172)
T PRK04388 33 LGLEPCPLCIF 43 (172)
T ss_pred cCCCCcHHHHH
Confidence 46899999964
No 82
>PF09930 DUF2162: Predicted transporter (DUF2162); InterPro: IPR017199 This group represents a predicted membrane transporter, MTH672 type.
Probab=22.20 E-value=54 Score=27.23 Aligned_cols=25 Identities=36% Similarity=0.639 Sum_probs=17.7
Q ss_pred ccCCCceEEeeCCCcHHHHHHHHHh
Q 029890 97 IELSDCEIYASCEPCPMCFGAIHLS 121 (186)
Q Consensus 97 ~~l~~~tly~T~ePC~mCa~ai~~~ 121 (186)
.+....+-..-.=|||-|..|+.-+
T Consensus 94 ~~~s~~t~lal~~PCPvCl~Ai~~S 118 (224)
T PF09930_consen 94 KDSSRRTFLALSLPCPVCLTAIFFS 118 (224)
T ss_pred CCCcccchhhhhcCchHHHHHHHHH
Confidence 3444445555667999999998866
No 83
>PHA03005 sulfhydryl oxidase; Provisional
Probab=22.09 E-value=62 Score=23.29 Aligned_cols=15 Identities=33% Similarity=0.656 Sum_probs=11.2
Q ss_pred eCCCcHHHHHHHHHh
Q 029890 107 SCEPCPMCFGAIHLS 121 (186)
Q Consensus 107 T~ePC~mCa~ai~~~ 121 (186)
..=||++|...-..+
T Consensus 39 ~tLPC~~Cr~HA~~a 53 (96)
T PHA03005 39 STLPCPACRRHAKEA 53 (96)
T ss_pred hcCCCHHHHHHHHHH
Confidence 455999999866555
No 84
>PRK00203 rnhA ribonuclease H; Reviewed
Probab=21.09 E-value=3.3e+02 Score=20.44 Aligned_cols=57 Identities=16% Similarity=0.188 Sum_probs=30.3
Q ss_pred EEEEEeeCCEEE-EEEecCcccCCCCcccHHHHHHHHHHHHcCCccCCCceEEeeCCCcHHHHH
Q 029890 54 FGAVVVRNDEVV-VSCHNMVLKSTDPTAHAEVTAIREACKKLNQIELSDCEIYASCEPCPMCFG 116 (186)
Q Consensus 54 VGavIv~~g~ii-~~g~N~~~~~~~~~~HAE~~Ai~~a~~~~~~~~l~~~tly~T~ePC~mCa~ 116 (186)
+|+|+..++... ..+. . ......+||..|+..|.+.+.. ....+||+--.-+..|..
T Consensus 21 ~g~v~~~~~~~~~~~~~---~-~~~TN~~aEL~Ai~~AL~~~~~--~~~v~I~tDS~yvi~~i~ 78 (150)
T PRK00203 21 WGAILRYKGHEKELSGG---E-ALTTNNRMELMAAIEALEALKE--PCEVTLYTDSQYVRQGIT 78 (150)
T ss_pred EEEEEEECCeeEEEecC---C-CCCcHHHHHHHHHHHHHHHcCC--CCeEEEEECHHHHHHHHH
Confidence 667776655432 2221 1 1112357999999999876432 123456665444444333
No 85
>PRK07106 5-aminoimidazole-4-carboxamide ribonucleotide transformylase; Provisional
Probab=20.85 E-value=6.3e+02 Score=22.86 Aligned_cols=32 Identities=9% Similarity=0.008 Sum_probs=23.9
Q ss_pred EEEEeeCCEEEEEEecCcccCCCCcccHHHHHHHHHH
Q 029890 55 GAVVVRNDEVVVSCHNMVLKSTDPTAHAEVTAIREAC 91 (186)
Q Consensus 55 GavIv~~g~ii~~g~N~~~~~~~~~~HAE~~Ai~~a~ 91 (186)
+-|++++|+.|+.|.-+. .-.|+-..|+.+|.
T Consensus 230 aIv~akdg~tvGIGaGQ~-----SRVd~~rlA~~KA~ 261 (390)
T PRK07106 230 SVCYAKDGQAIGIGAGQQ-----SRIHCTRLAGNKAD 261 (390)
T ss_pred eEEEEeCCeEEEeCCCCc-----chHHHHHHHHHHhc
Confidence 355667999999998644 35577788888874
No 86
>smart00798 AICARFT_IMPCHas AICARFT/IMPCHase bienzyme. This is a family of bifunctional enzymes catalysing the last two steps in de novo purine biosynthesis. The bifunctional enzyme is found in both prokaryotes and eukaryotes. The second last step is catalysed by 5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase (AICARFT), this enzyme catalyses the formylation of AICAR with 10-formyl-tetrahydrofolate to yield FAICAR and tetrahydrofolate. The last step is catalysed by IMP (Inosine monophosphate) cyclohydrolase (IMPCHase), cyclizing FAICAR (5-formylaminoimidazole-4-carboxamide ribonucleotide) to IMP.
Probab=20.77 E-value=1.6e+02 Score=25.71 Aligned_cols=19 Identities=11% Similarity=0.059 Sum_probs=14.7
Q ss_pred EEEEeeCCEEEEEEecCcc
Q 029890 55 GAVVVRNDEVVVSCHNMVL 73 (186)
Q Consensus 55 GavIv~~g~ii~~g~N~~~ 73 (186)
+-|++++|+.|+.|.-+++
T Consensus 281 AIv~ak~~~tvGiGaGQ~s 299 (311)
T smart00798 281 AIVYAKDGQTVGIGAGQMS 299 (311)
T ss_pred eEEEEeCCeEEEecCCCcc
Confidence 4567789999999986553
No 87
>PF13953 PapC_C: PapC C-terminal domain; PDB: 3L48_E 2XET_A 3RFZ_E 2KT6_A.
Probab=20.39 E-value=36 Score=22.38 Aligned_cols=23 Identities=26% Similarity=0.335 Sum_probs=12.0
Q ss_pred CCCCCcEEEEEee-CCEEEEE-Eec
Q 029890 48 CGDGGPFGAVVVR-NDEVVVS-CHN 70 (186)
Q Consensus 48 ~~~~~pVGavIv~-~g~ii~~-g~N 70 (186)
.+.+.|+||.|.+ +|+.++. |.+
T Consensus 7 ~G~~lPfGA~v~~~~g~~~g~Vg~~ 31 (68)
T PF13953_consen 7 DGKPLPFGASVSDEDGNNIGIVGQD 31 (68)
T ss_dssp TSEE--TT-EEEETTSSEEEEB-GC
T ss_pred CCCcCCCCcEEEcCCCCEEEEEcCC
Confidence 4456789999998 4555544 443
Done!