Query 029890
Match_columns 186
No_of_seqs 147 out of 1400
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 08:02:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029890.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029890hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2nx8_A TRNA-specific adenosine 100.0 5.4E-40 1.9E-44 261.5 14.5 151 27-181 12-162 (179)
2 1wkq_A Guanine deaminase; doma 100.0 7.6E-40 2.6E-44 257.3 15.1 150 30-181 10-161 (164)
3 1z3a_A TRNA-specific adenosine 100.0 9.9E-40 3.4E-44 257.6 14.3 151 27-181 5-155 (168)
4 2b3j_A TRNA adenosine deaminas 100.0 4.1E-39 1.4E-43 252.0 14.1 147 30-180 6-152 (159)
5 1wwr_A TRNA adenosine deaminas 100.0 9.8E-39 3.4E-43 252.5 14.9 147 30-181 22-168 (171)
6 2a8n_A Cytidine and deoxycytid 100.0 1.6E-38 5.3E-43 244.8 13.1 142 30-175 3-144 (144)
7 3dh1_A TRNA-specific adenosine 100.0 7.5E-39 2.6E-43 256.8 9.9 147 28-180 23-179 (189)
8 2g84_A Cytidine and deoxycytid 100.0 3.9E-38 1.3E-42 254.2 12.7 150 28-179 25-183 (197)
9 1p6o_A Cytosine deaminase; hyd 100.0 1.2E-36 4E-41 238.5 9.5 140 26-179 9-151 (161)
10 2w4l_A DCMP deaminse, deoxycyt 100.0 3.9E-35 1.3E-39 233.3 6.2 142 23-178 5-166 (178)
11 1vq2_A DCMP deaminase, deoxycy 100.0 5.6E-34 1.9E-38 229.0 12.7 123 30-167 2-177 (193)
12 2hvw_A Deoxycytidylate deamina 100.0 1.3E-33 4.4E-38 225.5 11.9 125 26-166 37-176 (184)
13 2b3z_A Riboflavin biosynthesis 100.0 2.8E-31 9.5E-36 232.3 12.1 133 30-180 13-154 (373)
14 2hxv_A Diaminohydroxyphosphori 100.0 9.8E-31 3.3E-35 227.9 14.5 134 31-180 14-156 (360)
15 2g6v_A Riboflavin biosynthesis 100.0 6.5E-31 2.2E-35 232.0 11.9 137 27-181 26-171 (402)
16 3g8q_A Predicted RNA-binding p 99.9 4.5E-26 1.5E-30 185.9 7.3 95 42-165 13-107 (278)
17 2nyt_A Probable C->U-editing e 99.9 2.9E-21 9.9E-26 154.6 12.8 106 52-167 33-148 (190)
18 1uwz_A Cytidine deaminase; CDD 99.8 3.9E-18 1.3E-22 129.8 11.7 90 31-122 3-97 (136)
19 2fr5_A Cytidine deaminase; tet 99.7 3.6E-17 1.2E-21 125.9 11.9 94 27-122 11-110 (146)
20 2z3g_A Blasticidin-S deaminase 99.7 5.5E-16 1.9E-20 117.1 13.1 97 27-128 3-105 (130)
21 3b8f_A Putative blasticidin S 99.5 2E-13 6.7E-18 104.5 10.0 97 30-130 3-108 (142)
22 1r5t_A Cytidine deaminase; zin 99.4 7.9E-13 2.7E-17 101.1 11.3 94 27-122 7-107 (142)
23 2d30_A Cytidine deaminase; pur 99.4 2.5E-12 8.6E-17 98.2 10.9 92 29-122 10-106 (141)
24 3r2n_A Cytidine deaminase; str 99.4 1.6E-12 5.4E-17 99.0 8.9 95 30-128 9-110 (138)
25 3mpz_A Cytidine deaminase; ssg 99.3 1.5E-11 5.1E-16 94.7 8.9 91 30-122 24-119 (150)
26 1ctt_A Cytidine deaminase; hyd 99.2 1.6E-10 5.6E-15 97.8 10.6 94 31-124 188-286 (294)
27 1ctt_A Cytidine deaminase; hyd 98.9 2.2E-09 7.4E-14 90.9 8.1 89 30-122 49-140 (294)
28 3dmo_A Cytidine deaminase; str 98.9 1.3E-08 4.3E-13 77.3 11.0 93 29-122 9-107 (138)
29 3oj6_A Blasticidin-S deaminase 98.8 6.7E-08 2.3E-12 74.8 12.3 94 25-124 25-125 (158)
30 4eg2_A Cytidine deaminase; UMP 98.4 1.6E-06 5.5E-11 73.3 9.4 90 31-123 53-144 (298)
31 4eg2_A Cytidine deaminase; UMP 98.3 6E-06 2E-10 69.8 10.8 90 32-122 193-288 (298)
32 3v4k_A DNA DC->DU-editing enzy 97.5 0.00012 4.1E-09 58.6 4.8 74 79-166 78-163 (203)
33 3vow_A Probable DNA DC->DU-edi 97.2 0.00054 1.8E-08 54.2 6.2 108 53-167 33-151 (190)
34 4ehi_A Bifunctional purine bio 80.9 20 0.0007 32.2 11.6 66 56-128 437-503 (534)
35 3zzm_A Bifunctional purine bio 71.3 34 0.0012 30.7 10.3 64 55-128 428-492 (523)
36 1zcz_A Bifunctional purine bio 63.3 77 0.0026 28.0 10.8 63 56-128 370-433 (464)
37 1zy7_A RNA-specific adenosine 46.4 1.4E+02 0.0049 25.6 11.0 15 102-116 144-158 (403)
38 4htu_A Ribonuclease H, RNAse H 42.7 13 0.00043 27.4 2.1 43 48-94 15-60 (134)
39 2ehg_A Ribonuclease HI; RNAse 40.1 42 0.0014 23.9 4.7 55 55-109 22-78 (149)
40 2gv5_C SFI1P; centrin, CDC31P, 33.6 12 0.00042 24.7 0.7 20 167-186 18-37 (73)
41 3vdp_A Recombination protein R 30.7 36 0.0012 26.9 3.1 30 85-116 59-88 (212)
42 1zbf_A Ribonuclease H-related 30.3 25 0.00084 25.8 2.0 44 48-94 21-66 (142)
43 3p1g_A Xenotropic murine leuke 29.9 96 0.0033 23.0 5.4 54 54-113 41-94 (165)
44 2fb5_A Hypothetical membrane s 28.7 31 0.0011 27.2 2.4 34 54-87 135-174 (205)
45 3u3g_D Ribonuclease H, RNAse H 28.2 54 0.0019 22.5 3.5 54 54-109 21-79 (140)
46 1vdd_A Recombination protein R 28.1 43 0.0015 26.8 3.2 30 85-116 45-74 (228)
47 2kq2_A Ribonuclease H-related 26.4 69 0.0024 23.0 3.9 55 53-108 21-78 (147)
48 1nm3_A Protein HI0572; hybrid, 26.2 2.1E+02 0.0072 21.6 7.9 68 53-126 126-198 (241)
49 2zuq_A Disulfide bond formatio 25.5 17 0.00059 27.6 0.4 10 107-116 37-46 (176)
50 3qio_A GAG-POL polyprotein; RN 25.4 1.4E+02 0.0046 21.6 5.4 33 80-116 50-82 (150)
No 1
>2nx8_A TRNA-specific adenosine deaminase; TAD, hydrolase; 2.00A {Streptococcus pyogenes serotype M6}
Probab=100.00 E-value=5.4e-40 Score=261.49 Aligned_cols=151 Identities=27% Similarity=0.440 Sum_probs=132.0
Q ss_pred CChHHHHHHHHHHHHHhhcccCCCCCcEEEEEeeCCEEEEEEecCcccCCCCcccHHHHHHHHHHHHcCCccCCCceEEe
Q 029890 27 VKDRDHKFLTRAVEEAYKGVECGDGGPFGAVVVRNDEVVVSCHNMVLKSTDPTAHAEVTAIREACKKLNQIELSDCEIYA 106 (186)
Q Consensus 27 ~~~~d~~~m~~A~~~A~~~~~~~~~~pVGavIv~~g~ii~~g~N~~~~~~~~~~HAE~~Ai~~a~~~~~~~~l~~~tly~ 106 (186)
.+++|++||++|+++|+++...++ .|||||||++|+||++|+|+.....+++.|||++||++|.++++.+.+.|+||||
T Consensus 12 ~~~~d~~~M~~Al~~A~~a~~~g~-~pVGAVIV~~g~Ii~~G~N~~~~~~d~t~HAE~~AI~~a~~~~~~~~l~g~tlYv 90 (179)
T 2nx8_A 12 SLEEQTYFMQEALKESEKSLQKAE-IPIGCVIVKDGEIIGRGHNAREESNQAIMHAEMMAINEANAHEGNWRLLDTTLFV 90 (179)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTS-CCCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTSSCCTTEEEEE
T ss_pred CcHHHHHHHHHHHHHHHhccccCC-CCEEEEEEECCEEEEEEECCCCCcCCCccCHHHHHHHHHHHHcCCCcccceEEEE
Confidence 447899999999999999998764 8999999999999999999999889999999999999999999899999999999
Q ss_pred eCCCcHHHHHHHHHhCCCEEEEEeecchhhhcCchhhHHhhhhccccccccceEEEeccchHHHHHHHHHHHhhc
Q 029890 107 SCEPCPMCFGAIHLSRIKRLVYGAKAEAAIAIGFDDFIADALRGTGFYQKAQLEIKKADGTGAAIAEQVFEKTKA 181 (186)
Q Consensus 107 T~ePC~mCa~ai~~~gI~rVvy~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~v~v~~~~~~~~~l~~~~~~~~~~ 181 (186)
|+|||+||+++|+|+||+||||+..+|+.+..| +.+++++...+++...|..+++++++..+++.||++.+.
T Consensus 91 TlEPC~mCa~ai~~agI~rVv~g~~d~~~g~~g---~~~~~l~~~~~~~~~~V~~gvl~~e~~~l~~~f~~~~r~ 162 (179)
T 2nx8_A 91 TIEPCVMCSGAIGLARIPHVIYGASNQKFGGVD---SLYQILTDERLNHRVQVERGLLAADCANIMQTFFRQGRE 162 (179)
T ss_dssp EECCBHHHHHHHHHTTCCEEEEEECCTTTBTTT---TSCCGGGCTTTTCCCEEEECTTHHHHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHhCCCeEEEEEeCCCCcccc---cHHHHhhccccCCCcEEEcCCCHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999998877 334444444444544454557899999999999988653
No 2
>1wkq_A Guanine deaminase; domain SWAP, the cytidine deaminase superfamily, substrate specificity, structural plasticity, hydrolase; 1.17A {Bacillus subtilis} SCOP: c.97.1.2 PDB: 1tiy_A
Probab=100.00 E-value=7.6e-40 Score=257.32 Aligned_cols=150 Identities=41% Similarity=0.678 Sum_probs=131.5
Q ss_pred HHHHHHHHHHHHHhhcccCCCCCcEEEEEeeCCEEEEEEecCcccCCCCcccHHHHHHHHHHHHcCCccCCCceEEeeCC
Q 029890 30 RDHKFLTRAVEEAYKGVECGDGGPFGAVVVRNDEVVVSCHNMVLKSTDPTAHAEVTAIREACKKLNQIELSDCEIYASCE 109 (186)
Q Consensus 30 ~d~~~m~~A~~~A~~~~~~~~~~pVGavIv~~g~ii~~g~N~~~~~~~~~~HAE~~Ai~~a~~~~~~~~l~~~tly~T~e 109 (186)
.|+.||++|+++|+++...+++.|||||||++|+||++|+|++....+++.|||++||++|.++++.+.+.|+|||+|+|
T Consensus 10 ~~~~~M~~Al~~A~~a~~~g~~~pVGAVIV~~g~Ii~~G~N~~~~~~d~~~HAE~~AI~~a~~~~~~~~l~g~tlYvT~E 89 (164)
T 1wkq_A 10 NHETFLKRAVTLACEGVNAGIGGPFGAVIVKDGAIIAEGQNNVTTSNDPTAHAEVTAIRKACKVLGAYQLDDCILYTSCE 89 (164)
T ss_dssp CHHHHHHHHHHHHHHHHHTTSSSSCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTSSSCTTEEEEEEEC
T ss_pred CHHHHHHHHHHHHHHHHhcCCCCCEEEEEEECCEEEEEEecCCcCCCCcccCHHHHHHHHHHHHcCCCCcCceEEEEeCC
Confidence 47889999999999999887458999999999999999999998889999999999999999998899999999999999
Q ss_pred CcHHHHHHHHHhCCCEEEEEeecchhhhcCchh-hHHhhhhccccccccceEE-EeccchHHHHHHHHHHHhhc
Q 029890 110 PCPMCFGAIHLSRIKRLVYGAKAEAAIAIGFDD-FIADALRGTGFYQKAQLEI-KKADGTGAAIAEQVFEKTKA 181 (186)
Q Consensus 110 PC~mCa~ai~~~gI~rVvy~~~~~~~~~~g~~~-~~~~~~~~~~~l~~~~v~v-~~~~~~~~~l~~~~~~~~~~ 181 (186)
||+||+++|+|+||+||||+..+++.++.||++ +.++.+......+ ++++ ..+.++|..+++.||+..++
T Consensus 90 PC~mCa~ai~~agI~rVv~g~~~~~~~~~gf~~~~~~~~~~~~~~~~--~~~v~gv~~~e~~~ll~~f~~~~~~ 161 (164)
T 1wkq_A 90 PCPMCLGAIYWARPKAVFYAAEHTDAAEAGFDDSFIYKEIDKPAEER--TIPFYQVTLTEHLSPFQAWRNFANK 161 (164)
T ss_dssp CCHHHHHHHHHHCCSEEEEEECHHHHHHTTCSHHHHHHHHTSCGGGS--SSCEEECCCTTTTHHHHHHHHCTTC
T ss_pred ChHHHHHHHHHHCCCEEEEEEcCCCccccCcchHHHHHHhcchhhcC--CeEEEecCHHHHHHHHHHHHhccCC
Confidence 999999999999999999999999999999887 5566654443333 3444 46788899999999987543
No 3
>1z3a_A TRNA-specific adenosine deaminase; tRNA adenosine deaminase, dimer, zinc, metalloenzyme, structural genomics, PSI, protein structure initiative; 2.03A {Escherichia coli} SCOP: c.97.1.2 PDB: 3ocq_A
Probab=100.00 E-value=9.9e-40 Score=257.61 Aligned_cols=151 Identities=30% Similarity=0.467 Sum_probs=130.1
Q ss_pred CChHHHHHHHHHHHHHhhcccCCCCCcEEEEEeeCCEEEEEEecCcccCCCCcccHHHHHHHHHHHHcCCccCCCceEEe
Q 029890 27 VKDRDHKFLTRAVEEAYKGVECGDGGPFGAVVVRNDEVVVSCHNMVLKSTDPTAHAEVTAIREACKKLNQIELSDCEIYA 106 (186)
Q Consensus 27 ~~~~d~~~m~~A~~~A~~~~~~~~~~pVGavIv~~g~ii~~g~N~~~~~~~~~~HAE~~Ai~~a~~~~~~~~l~~~tly~ 106 (186)
++++|++||++|+++|+++...++ .|||||||++|+||++|+|+.+...+++.|||++||++|.++++.+.+.|+|||+
T Consensus 5 ~~~~d~~~M~~A~~~A~~a~~~~~-~pVGAviV~~g~Ii~~G~N~~~~~~d~t~HAE~~Ai~~a~~~~~~~~l~~~tlYv 83 (168)
T 1z3a_A 5 VEFSHEYWMRHALTLAKRAWDERE-VPVGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQGGLVMQNYRLIDATLYV 83 (168)
T ss_dssp CTTSHHHHHHHHHHHHHHHHHTTS-CCCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTSSCCTTCEEEE
T ss_pred cchHHHHHHHHHHHHHHHhhhcCC-CcEEEEEEECCEEEEEEEcccccCCCcchhHHHHHHHHHHHHcCCCcccccEEEE
Confidence 345688999999999999988764 8999999999999999999998889999999999999999998889999999999
Q ss_pred eCCCcHHHHHHHHHhCCCEEEEEeecchhhhcCchhhHHhhhhccccccccceEEEeccchHHHHHHHHHHHhhc
Q 029890 107 SCEPCPMCFGAIHLSRIKRLVYGAKAEAAIAIGFDDFIADALRGTGFYQKAQLEIKKADGTGAAIAEQVFEKTKA 181 (186)
Q Consensus 107 T~ePC~mCa~ai~~~gI~rVvy~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~v~v~~~~~~~~~l~~~~~~~~~~ 181 (186)
|+|||+||+++|+|+||+||||+..+|+.+..| +.+++++...+++...|..+.+++++..+++.||++.+.
T Consensus 84 TlEPC~mC~~ai~~agi~rVv~g~~d~~~g~~g---~~~~~l~~~~~~~~~~v~~gvl~~e~~~l~~~f~~~~r~ 155 (168)
T 1z3a_A 84 TLEPCVMCAGAMIHSRIGRVVFGARDAKTGAAG---SLMDVLHHPGMNHRVEITEGILADECAALLSDFFRMRRQ 155 (168)
T ss_dssp EECCCHHHHHHHHHHTCSEEEEEECCTTTCTBT---TSCBCTTCTTCSSCCEEECCTTHHHHHHHHHHHHHHHHT
T ss_pred cCCCcHHHHHHHHHHCcCEEEEEecCCCccccc---hhHHHhhccccCCCcEEEcCCCHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999988877 334444444444443444446889999999999998753
No 4
>2b3j_A TRNA adenosine deaminase; mixed alpha-beta, protein-RNA complex, RNA stem-loop, hydrol complex; HET: P5P; 2.00A {Staphylococcus aureus subsp} SCOP: c.97.1.2
Probab=100.00 E-value=4.1e-39 Score=251.95 Aligned_cols=147 Identities=35% Similarity=0.587 Sum_probs=128.2
Q ss_pred HHHHHHHHHHHHHhhcccCCCCCcEEEEEeeCCEEEEEEecCcccCCCCcccHHHHHHHHHHHHcCCccCCCceEEeeCC
Q 029890 30 RDHKFLTRAVEEAYKGVECGDGGPFGAVVVRNDEVVVSCHNMVLKSTDPTAHAEVTAIREACKKLNQIELSDCEIYASCE 109 (186)
Q Consensus 30 ~d~~~m~~A~~~A~~~~~~~~~~pVGavIv~~g~ii~~g~N~~~~~~~~~~HAE~~Ai~~a~~~~~~~~l~~~tly~T~e 109 (186)
+|++||++|+++|+++...++ .|||||||++|+||++|+|+.+...+++.|||++||++|.++++.+.+.++|||+|+|
T Consensus 6 ~d~~~m~~A~~~A~~a~~~~~-~pVGAviv~~g~Ii~~G~N~~~~~~~~~~HAE~~Ai~~a~~~~~~~~l~~~tlyvT~E 84 (159)
T 2b3j_A 6 NDIYFMTLAIEEAKKAAQLGE-VPIGAIITKDDEVIARAHNLRETLQQPTAHAEHIAIERAAKVLGSWRLEGCTLYVTLE 84 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHTTS-CCCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTSSCCTTEEEEEEEC
T ss_pred HHHHHHHHHHHHHHHhhcCCC-CCEEEEEEECCEEEEEEECCCCCCCCCccCHHHHHHHHHHHHcCCCCcceeEEEECCC
Confidence 688999999999999988764 8999999999999999999998888999999999999999998889999999999999
Q ss_pred CcHHHHHHHHHhCCCEEEEEeecchhhhcCchhhHHhhhhccccccccceEEEeccchHHHHHHHHHHHhh
Q 029890 110 PCPMCFGAIHLSRIKRLVYGAKAEAAIAIGFDDFIADALRGTGFYQKAQLEIKKADGTGAAIAEQVFEKTK 180 (186)
Q Consensus 110 PC~mCa~ai~~~gI~rVvy~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~v~v~~~~~~~~~l~~~~~~~~~ 180 (186)
||+||+++|+|+||+||||+..+|+.+..| +.+++++...+++...|..+.+++++..+++.||++.+
T Consensus 85 PC~mC~~ai~~agi~rVv~~~~~~~~~~~g---~~~~~l~~~~~~~~~~v~~gvl~~e~~~l~~~f~~~~r 152 (159)
T 2b3j_A 85 PCVMCAGTIVMSRIPRVVYGADDPKGGCSG---SLMNLLQQSNFNHRAIVDKGVLKEACSTLLTTFFKNLR 152 (159)
T ss_dssp CCHHHHHHHHHTTCSEEEEEECCTTTCTBT---TSCBTTSCTTSSCCCEEECCTTHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHhCCCeEEEEeeCCCccccc---HHHHHHhccccCCCCEEEcCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999988877 33444444444444444444688999999999998865
No 5
>1wwr_A TRNA adenosine deaminase TADA; homodimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.80A {Aquifex aeolicus} SCOP: c.97.1.2
Probab=100.00 E-value=9.8e-39 Score=252.53 Aligned_cols=147 Identities=33% Similarity=0.558 Sum_probs=128.2
Q ss_pred HHHHHHHHHHHHHhhcccCCCCCcEEEEEeeCCEEEEEEecCcccCCCCcccHHHHHHHHHHHHcCCccCCCceEEeeCC
Q 029890 30 RDHKFLTRAVEEAYKGVECGDGGPFGAVVVRNDEVVVSCHNMVLKSTDPTAHAEVTAIREACKKLNQIELSDCEIYASCE 109 (186)
Q Consensus 30 ~d~~~m~~A~~~A~~~~~~~~~~pVGavIv~~g~ii~~g~N~~~~~~~~~~HAE~~Ai~~a~~~~~~~~l~~~tly~T~e 109 (186)
+|++||++|+++|+++...++ .|||||||++|+||++|+|+.+...+++.|||++||++|.++++.+.+.|+|||+|+|
T Consensus 22 ~~~~~M~~A~~~A~~a~~~~~-~pVGAvIV~dg~Ii~~G~N~~~~~~d~t~HAE~~AI~~a~~~~g~~~l~~~tlYvT~E 100 (171)
T 1wwr_A 22 GKEYFLKVALREAKRAFEKGE-VPVGAIIVKEGEIISKAHNSVEELKDPTAHAEMLAIKEACRRLNTKYLEGCELYVTLE 100 (171)
T ss_dssp SHHHHHHHHHHHHHHHHHTTS-CCCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTCSCCTTEEEEESSC
T ss_pred hHHHHHHHHHHHHHhcccCCC-CCEEEEEEECCEEEEEEECCCCccCCcccCHHHHHHHHHHHHcCCCccCceEEEECCC
Confidence 478999999999999998764 8999999999999999999999889999999999999999998889999999999999
Q ss_pred CcHHHHHHHHHhCCCEEEEEeecchhhhcCchhhHHhhhhccccccccceEEEeccchHHHHHHHHHHHhhc
Q 029890 110 PCPMCFGAIHLSRIKRLVYGAKAEAAIAIGFDDFIADALRGTGFYQKAQLEIKKADGTGAAIAEQVFEKTKA 181 (186)
Q Consensus 110 PC~mCa~ai~~~gI~rVvy~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~v~v~~~~~~~~~l~~~~~~~~~~ 181 (186)
||+||+++|+|+||+||||+..+|+.++.| +.+++++...+++...|.. .+++++..+++.||++.+.
T Consensus 101 PC~mC~~ai~~agi~rVv~~~~d~~~g~~g---~~~~~l~~~~~~~~i~V~~-vl~~e~~~ll~~f~~~~r~ 168 (171)
T 1wwr_A 101 PCIMCSYALVLSRIEKVIFSALDKKHGGVV---SVFNILDEPTLNHRVKWEY-YPLEEASELLSEFFKKLRN 168 (171)
T ss_dssp CBHHHHHHHHHTTCSEEEESSCCTTTBTTT---TSCCGGGCTTCSSCCEEEE-CCCHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHCCCEEEEEecCCCccccc---hHHHHHhccccCCCcEEEE-ecHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999988877 3344444444444444444 7888899999999988764
No 6
>2a8n_A Cytidine and deoxycytidylate deaminase; RNA editing, RNA binding protein; 1.60A {Agrobacterium tumefaciens} SCOP: c.97.1.2
Probab=100.00 E-value=1.6e-38 Score=244.83 Aligned_cols=142 Identities=32% Similarity=0.452 Sum_probs=112.4
Q ss_pred HHHHHHHHHHHHHhhcccCCCCCcEEEEEeeCCEEEEEEecCcccCCCCcccHHHHHHHHHHHHcCCccCCCceEEeeCC
Q 029890 30 RDHKFLTRAVEEAYKGVECGDGGPFGAVVVRNDEVVVSCHNMVLKSTDPTAHAEVTAIREACKKLNQIELSDCEIYASCE 109 (186)
Q Consensus 30 ~d~~~m~~A~~~A~~~~~~~~~~pVGavIv~~g~ii~~g~N~~~~~~~~~~HAE~~Ai~~a~~~~~~~~l~~~tly~T~e 109 (186)
+|++||++|+++|+++...++ .|||||||++|+||++|+|+.+...+++.|||++||++|.++++.+.+.++|||+|+|
T Consensus 3 ~d~~~m~~A~~~A~~a~~~~~-~~VGAviv~~g~Ii~~G~N~~~~~~~~~~HAE~~Ai~~a~~~~~~~~~~~~tly~T~e 81 (144)
T 2a8n_A 3 ERTHFMELALVEARSAGERDE-VPIGAVLVLDGRVIARSGNRTRELNDVTAHAEIAVIRMACEALGQERLPGADLYVTLE 81 (144)
T ss_dssp CHHHHHHHHHHHHHHHHHTTS-CCCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTCSCCTTCEEEEEEC
T ss_pred hHHHHHHHHHHHHHHhhcCCC-CCEEEEEEECCEEEEEEECCCCCCCCCcCCHHHHHHHHHHHHcCCCccCCeEEEECCC
Confidence 588999999999999998764 8999999999999999999999889999999999999999998889999999999999
Q ss_pred CcHHHHHHHHHhCCCEEEEEeecchhhhcCchhhHHhhhhccccccccceEEEeccchHHHHHHHH
Q 029890 110 PCPMCFGAIHLSRIKRLVYGAKAEAAIAIGFDDFIADALRGTGFYQKAQLEIKKADGTGAAIAEQV 175 (186)
Q Consensus 110 PC~mCa~ai~~~gI~rVvy~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~v~v~~~~~~~~~l~~~~ 175 (186)
||+||+++|+|+||+||||+..+++.+..| +.+++++...+++...|..+.+++++..+++.|
T Consensus 82 PC~mC~~ai~~~~i~rvv~~~~~~~~~~~g---~~~~~~~~~~~~~~~~v~~gvl~~e~~~l~~~f 144 (144)
T 2a8n_A 82 PCTMCAAAISFARIRRLYYGAQDPKGGAVE---SGVRFFSQPTCHHAPDVYSGLAESESAEILRQF 144 (144)
T ss_dssp CBHHHHHHHHHTTCSEEEEEECCTTTBCSS---STTCGGGSTTCCCCCEEEEC-------------
T ss_pred ChHHHHHHHHHHCCCEEEEeecCCCccccc---hHHHHHhccccCCCcEEEeCCCHHHHHHHHhcC
Confidence 999999999999999999999999988877 334444444444443343346788887777654
No 7
>3dh1_A TRNA-specific adenosine deaminase 2; zinc-binding protein, TRA tRNA processing, hydrolase, structural genomics, structural consortium, SGC; 2.80A {Homo sapiens}
Probab=100.00 E-value=7.5e-39 Score=256.82 Aligned_cols=147 Identities=22% Similarity=0.357 Sum_probs=121.8
Q ss_pred ChHHHHHHHHHHHHHhhcccCCCCCcEEEEEeeCCEEEEEEecCcccCCCCcccHHHHHHHHHHHHcC------CccCCC
Q 029890 28 KDRDHKFLTRAVEEAYKGVECGDGGPFGAVVVRNDEVVVSCHNMVLKSTDPTAHAEVTAIREACKKLN------QIELSD 101 (186)
Q Consensus 28 ~~~d~~~m~~A~~~A~~~~~~~~~~pVGavIv~~g~ii~~g~N~~~~~~~~~~HAE~~Ai~~a~~~~~------~~~l~~ 101 (186)
.++|++||++|+++|+++...++ .|||||||++|+||++|+|+++...+++.|||++||++|.+... .+.+.|
T Consensus 23 ~~~d~~~M~~Al~lA~~a~~~~~-~pVGAVIV~~g~IIa~G~N~~~~~~~~t~HAEi~AI~~a~~~~~~~~~~~~~~l~g 101 (189)
T 3dh1_A 23 MEETEKWMEEAMHMAKEALENTE-VPVGCLMVYNNEVVGKGRNEVNQTKNATRHAEMVAIDQVLDWCRQSGKSPSEVFEH 101 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTS-CCCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHHHHCCCHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHhhhCCC-CCEEEEEEECCEEEEEEeCCCCccCCCcCcHHHHHHHHHHHHHhhcCcccccccCC
Confidence 36789999999999999987774 89999999999999999999888899999999999999976521 135789
Q ss_pred ceEEeeCCCcHHHHHHHHHhCCCEEEEEeecchhhhcCchhhHHhhhhccccccccc--eEEE--eccchHHHHHHHHHH
Q 029890 102 CEIYASCEPCPMCFGAIHLSRIKRLVYGAKAEAAIAIGFDDFIADALRGTGFYQKAQ--LEIK--KADGTGAAIAEQVFE 177 (186)
Q Consensus 102 ~tly~T~ePC~mCa~ai~~~gI~rVvy~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~--v~v~--~~~~~~~~l~~~~~~ 177 (186)
+|||||+|||+||++||+|+||+||||+..+|..++.| +.+++.. ..+...| ++|. +++++|..|++.||+
T Consensus 102 ~tLYvTlEPC~mCa~Aii~agI~rVVyg~~~p~~gg~g---~~~~~~~--~~l~~~gh~ieV~~Gvl~~e~~~Ll~~Ff~ 176 (189)
T 3dh1_A 102 TVLYVTVEPCIMCAAALRLMKIPLVVYGCQNERFGGCG---SVLNIAS--ADLPNTGRPFQCIPGYRAEEAVEMLKTFYK 176 (189)
T ss_dssp EEEEEEECCBHHHHHHHHHHTCCEEEEEECCTTTBTBT---TSCBCTT--CCCTTSSCCCEEECCTTHHHHHHHHHHHTC
T ss_pred eEEEEeCCChHHHHHHHHHhCCCEEEEEecCCCccccc---ccccchh--hHHHHcCCCeEEEeCccHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999988766 3233221 2233444 6654 688999999999998
Q ss_pred Hhh
Q 029890 178 KTK 180 (186)
Q Consensus 178 ~~~ 180 (186)
+.+
T Consensus 177 ~~~ 179 (189)
T 3dh1_A 177 QEN 179 (189)
T ss_dssp C--
T ss_pred Hhc
Confidence 765
No 8
>2g84_A Cytidine and deoxycytidylate deaminase zinc-bindi; zinc-binding region, structural genomics, PSI, protein structure initiative; 1.40A {Nitrosomonas europaea} SCOP: c.97.1.2
Probab=100.00 E-value=3.9e-38 Score=254.21 Aligned_cols=150 Identities=27% Similarity=0.418 Sum_probs=127.0
Q ss_pred ChHHHHHHHHHHHHHhhcccCCCCCcEEEEEee-C-CEEEEEEecCcccCCCCcccHHHHHHHHHHHHcCCccC-----C
Q 029890 28 KDRDHKFLTRAVEEAYKGVECGDGGPFGAVVVR-N-DEVVVSCHNMVLKSTDPTAHAEVTAIREACKKLNQIEL-----S 100 (186)
Q Consensus 28 ~~~d~~~m~~A~~~A~~~~~~~~~~pVGavIv~-~-g~ii~~g~N~~~~~~~~~~HAE~~Ai~~a~~~~~~~~l-----~ 100 (186)
.++|++||++|+++|+++... .+.|||||||+ + |+||++|+|+++...+++.|||++||++|+++++.+.+ +
T Consensus 25 ~~~d~~~M~~Al~~A~~a~~~-~~~PvGAVIV~~~~g~Iia~G~N~~~~~~~~~~HAE~~Ai~~a~~~~~~~~L~~~~~~ 103 (197)
T 2g84_A 25 LAAPEARMGYVLELVRANIAA-DGGPFAAAVFERDSGLLIAAGTNRVVPGRCSAAHAEILALSLAQAKLDTHDLSADGLP 103 (197)
T ss_dssp CCSHHHHHHHHHHHHHHHHHT-TCCSCEEEEEETTTCBEEEEEECCTTTTTCTTCCHHHHHHHHHHHHHTCSCTTCTTSC
T ss_pred CHHHHHHHHHHHHHHHhhhhc-CCCCEEEEEEEcCCCEEEEEEECCCCccCCCccCHHHHHHHHHHHHcCCccccccCcC
Confidence 446889999999999999844 35999999998 7 99999999999988999999999999999998877765 5
Q ss_pred CceEEeeCCCcHHHHHHHHHhCCCEEEEEeecchhhhcCchhhHHhhhhccccccccceEEE--eccchHHHHHHHHHHH
Q 029890 101 DCEIYASCEPCPMCFGAIHLSRIKRLVYGAKAEAAIAIGFDDFIADALRGTGFYQKAQLEIK--KADGTGAAIAEQVFEK 178 (186)
Q Consensus 101 ~~tly~T~ePC~mCa~ai~~~gI~rVvy~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~v~v~--~~~~~~~~l~~~~~~~ 178 (186)
|+|||||+|||+||++||+|+||+||||+..+++.+..||++.. ....+...|++.+|+|. .+.+++..+++.||..
T Consensus 104 g~tlYvTlEPC~mCa~Aii~agI~rVv~g~~d~~~~~~G~~~~~-~~~~~~~~l~~~~i~V~~gvl~~e~~~ll~~f~~~ 182 (197)
T 2g84_A 104 ACELVTSAEPCVMCFGAVIWSGVRSLVCAARSDDVEAIGFDEGP-RPENWMGGLEARGITVTTGLLRDAACALLREYNAC 182 (197)
T ss_dssp CEEEEEEECCCHHHHHHHHHHCCSEEEEEECHHHHHHTTCCCCC-CCTTHHHHHHHTTCEEECCTTHHHHHHHHHHHHHH
T ss_pred CEEEEEeCCCCHHHHHHHHHhCcCEEEEEecCCCccccCccccc-chhHHHHHHhcCCCEEEecCCHHHHHHHHHHHHHc
Confidence 69999999999999999999999999999999999888864310 01123344677888885 5888899999999986
Q ss_pred h
Q 029890 179 T 179 (186)
Q Consensus 179 ~ 179 (186)
.
T Consensus 183 ~ 183 (197)
T 2g84_A 183 N 183 (197)
T ss_dssp C
T ss_pred C
Confidence 4
No 9
>1p6o_A Cytosine deaminase; hydrolase, dimer, inhibitor bound; 1.14A {Saccharomyces cerevisiae} SCOP: c.97.1.2 PDB: 1ox7_A 1rb7_A 1ysd_A 1ysb_A 2o3k_A 1uaq_A
Probab=100.00 E-value=1.2e-36 Score=238.51 Aligned_cols=140 Identities=26% Similarity=0.401 Sum_probs=119.0
Q ss_pred CCChHHHHHHHHHHHHHhhcccCCCCCcEEEEEe--eCCEEEEEEecCcccCCCCcccHHHHHHHHHHHHcCCccCCCce
Q 029890 26 AVKDRDHKFLTRAVEEAYKGVECGDGGPFGAVVV--RNDEVVVSCHNMVLKSTDPTAHAEVTAIREACKKLNQIELSDCE 103 (186)
Q Consensus 26 ~~~~~d~~~m~~A~~~A~~~~~~~~~~pVGavIv--~~g~ii~~g~N~~~~~~~~~~HAE~~Ai~~a~~~~~~~~l~~~t 103 (186)
..+++|++||++|+++|+++...++ .||||||| ++|+||++|+|+++...+++.|||++||++|.+. +...+.++|
T Consensus 9 m~~~~d~~~M~~A~~~A~~a~~~~~-~pVGAviVd~~~g~Ii~~G~N~~~~~~~~t~HAE~~Ai~~a~~~-~~~~~~~~t 86 (161)
T 1p6o_A 9 MASKWDQKGMDIAYEEAALGYKEGG-VPIGGCLINNKDGSVLGRGHNMRFQKGSATLHGEISTLENCGRL-EGKVYKDTT 86 (161)
T ss_dssp CCCTTHHHHHHHHHHHHHHHHHTTS-CCCEEEEEETTTCCEEEEEECCHHHHTCSSCCHHHHHHHHHCSC-CHHHHTTEE
T ss_pred CCCHHHHHHHHHHHHHHHhhhccCC-CCEEEEEEEecCCEEEEEEECCCCCCCCcccCHHHHHHHHHHHh-CCccccccc
Confidence 3456789999999999999998764 89999999 5899999999999888899999999999998753 234578999
Q ss_pred EEeeCCCcHHHHHHHHHhCCCEEEEEeecchhhhcCchhhHHhhhhccccccccceEEEe-ccchHHHHHHHHHHHh
Q 029890 104 IYASCEPCPMCFGAIHLSRIKRLVYGAKAEAAIAIGFDDFIADALRGTGFYQKAQLEIKK-ADGTGAAIAEQVFEKT 179 (186)
Q Consensus 104 ly~T~ePC~mCa~ai~~~gI~rVvy~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~v~v~~-~~~~~~~l~~~~~~~~ 179 (186)
||+|+|||+||+++|+++||+||||+..++..+ . +..+|++++|+|.. +.+++..+++.||++.
T Consensus 87 lYvT~EPC~mC~~ai~~agi~rVv~g~~~~~~g-~-----------~~~~l~~~gi~v~~~~~~e~~~l~~~f~~~~ 151 (161)
T 1p6o_A 87 LYTTLSPCDMCTGAIIMYGIPRCVVGENVNFKS-K-----------GEKYLQTRGHEVVVVDDERCKKIMKQFIDER 151 (161)
T ss_dssp EEEEECCCHHHHHHHHHHTCCEEEEEESSSCCC-T-----------HHHHHHHTTCEEEECCCHHHHHHHHHHHHHC
T ss_pred cccCCCCCHHHHHHHHHhCCCEEEEEecCCCCc-c-----------HHHHHHhcCCEEEEecHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999988653 1 23446678888774 5677999999998763
No 10
>2w4l_A DCMP deaminse, deoxycytidylate deaminase; pyrimidine metabolism, nucleotide biosynthesis, zinc, hexamer, hydrolase, metal-binding, phosphoprotein; 2.10A {Homo sapiens}
Probab=100.00 E-value=3.9e-35 Score=233.29 Aligned_cols=142 Identities=18% Similarity=0.229 Sum_probs=111.4
Q ss_pred CCCCCChHHHHHHHHHHHHHhhcccCCCCCcEEEEEee-CCEEEEEEecCcccC------------CC-------CcccH
Q 029890 23 HQEAVKDRDHKFLTRAVEEAYKGVECGDGGPFGAVVVR-NDEVVVSCHNMVLKS------------TD-------PTAHA 82 (186)
Q Consensus 23 ~~~~~~~~d~~~m~~A~~~A~~~~~~~~~~pVGavIv~-~g~ii~~g~N~~~~~------------~~-------~~~HA 82 (186)
...+..+||++||++|+++|+++... + .|||||||+ +|+||++|+|+.+.. .+ .+.||
T Consensus 5 ~~~~~~~~d~~~M~~A~~~A~~s~~p-~-~~VGAvIV~~dg~Iia~G~N~~~~~~~d~~~~~~~~~g~p~~~~~~~t~HA 82 (178)
T 2w4l_A 5 KRDDYLEWPEYFMAVAFLSAQRSKDP-N-SQVGACIVNSENKIVGIGYNGMPNGCSDDVLPWRRTAENKLDTKYPYVCHA 82 (178)
T ss_dssp CCSSCCCHHHHHHHHHHHHHTTCCCS-S-CCCEEEEECTTSCEEEEEESBCCTTCCTTTSCCCSCCSSGGGSSTTTCBCH
T ss_pred ccccccHHHHHHHHHHHHHHHhcCCC-C-CCEEEEEEecCCEEEEEEECCCCcCccccccccccccCCccccccCCcCCH
Confidence 44566789999999999999999865 3 899999994 899999999988643 33 37999
Q ss_pred HHHHHHHHHHHcCCccCCCceEEeeCCCcHHHHHHHHHhCCCEEEEEeecchhhhcCchhhHHhhhhccccccccceEEE
Q 029890 83 EVTAIREACKKLNQIELSDCEIYASCEPCPMCFGAIHLSRIKRLVYGAKAEAAIAIGFDDFIADALRGTGFYQKAQLEIK 162 (186)
Q Consensus 83 E~~Ai~~a~~~~~~~~l~~~tly~T~ePC~mCa~ai~~~gI~rVvy~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~v~v~ 162 (186)
|++||++|. +..+.|+|||||+|||.||+++|+++||+||||+..+..... . ...+..+|+++||+|.
T Consensus 83 E~~AI~~a~----g~~~~g~tlYvTlePC~~Ca~aIi~agI~rVVy~~~~~~d~~-----~---~~~~~~~L~~aGI~V~ 150 (178)
T 2w4l_A 83 ELNAIMNKN----LTDVKGCSMYVALFPCNECAKLIIQAGIKEVIFMSDKYHDSD-----E---ATAARLLFNMAGVTFR 150 (178)
T ss_dssp HHHHHHC--------CCTTCEEEEEECCCHHHHHHHHHTTCCEEEEEECTTTTSH-----H---HHHHHHHHHHHTCEEE
T ss_pred HHHHHHHhc----CCCccccEEEEeCCcHHHHHHHHHHHCCCEEEEEeccCCCCc-----c---hHHHHHHHHHCCCEEE
Confidence 999999874 357899999999999999999999999999999987221100 0 1124678999999999
Q ss_pred eccchHHHHHHHHHHH
Q 029890 163 KADGTGAAIAEQVFEK 178 (186)
Q Consensus 163 ~~~~~~~~l~~~~~~~ 178 (186)
.++.++..+...|..+
T Consensus 151 ~~~~~~~~l~~~f~~~ 166 (178)
T 2w4l_A 151 KFIPKCSKIVIDFDSI 166 (178)
T ss_dssp ECCCSCSEEEEEGGGC
T ss_pred EccHHHHHHHHHHHhh
Confidence 9988876666555443
No 11
>1vq2_A DCMP deaminase, deoxycytidylate deaminase; hydrolase; HET: DDN; 2.20A {Enterobacteria phage T4} SCOP: c.97.1.2
Probab=100.00 E-value=5.6e-34 Score=229.03 Aligned_cols=123 Identities=23% Similarity=0.271 Sum_probs=105.7
Q ss_pred HHHHHHHHHHHHHhhcccCCCCCcEEEEEeeCCEEEEEEecCcccCC---------------------------------
Q 029890 30 RDHKFLTRAVEEAYKGVECGDGGPFGAVVVRNDEVVVSCHNMVLKST--------------------------------- 76 (186)
Q Consensus 30 ~d~~~m~~A~~~A~~~~~~~~~~pVGavIv~~g~ii~~g~N~~~~~~--------------------------------- 76 (186)
+|++||++|+.+|+++.. ++ .|||||||++|+||++|+|+++.+.
T Consensus 2 ~d~~fM~~A~~~A~rs~~-~~-~~VGAVIV~dg~Iia~G~N~~~~g~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (193)
T 1vq2_A 2 KASTVLQIAYLVSQESKC-CS-WKVGAVIEKNGRIISTGYNGSPAGGVNCCDYAAEQGWLLNKPKHAIIQGHKPECVSFG 79 (193)
T ss_dssp CHHHHHHHHHHHHTTCCC-SS-BCCEEEEEETTEEEEEEECBCCTTSCCHHHHHHHHTCEEEC-----------------
T ss_pred CHHHHHHHHHHHHHhcCC-CC-CCEEEEEEECCEEEEEEeCCCCCCCCCcchhhcccccccccccccccccccccccccc
Confidence 488999999999999975 33 8999999999999999999988632
Q ss_pred --------------------CCcccHHHHHHHHHHHHcCCccCCCceEEeeCCCcHHHHHHHHHhCCCEEEEEeecchhh
Q 029890 77 --------------------DPTAHAEVTAIREACKKLNQIELSDCEIYASCEPCPMCFGAIHLSRIKRLVYGAKAEAAI 136 (186)
Q Consensus 77 --------------------~~~~HAE~~Ai~~a~~~~~~~~l~~~tly~T~ePC~mCa~ai~~~gI~rVvy~~~~~~~~ 136 (186)
+++.|||++||++|+++ +..+.|+|||||+|||+||+++|+++||+||||+.++++..
T Consensus 80 ~~~~~~l~~~~~~~~~~~~~~~~~HAE~~AI~~a~~~--g~~~~g~tLYvT~ePC~~Ca~aIi~aGI~rVvy~~~~~~~~ 157 (193)
T 1vq2_A 80 STDRFVLAKEHRSAHSEWSSKNEIHAELNAILFAAEN--GSSIEGATMYVTLSPCPDCAKAIAQSGIKKLVYCETYDKNK 157 (193)
T ss_dssp ---CEEECGGGHHHHHHHHHHHCBCHHHHHHHHHHHH--TCCCTTCEEEEEECCCHHHHHHHHHHTCCEEEEEECCTTCC
T ss_pred cccccccchhhccccccccCCCCCCHHHHHHHHHHhc--CCCcCCeEEEEeCCCcHHHHHHHHHhCCCEEEEecCCCCcc
Confidence 24789999999999887 46789999999999999999999999999999998888654
Q ss_pred hcCchhhHHhhhhccccccccceEEEeccch
Q 029890 137 AIGFDDFIADALRGTGFYQKAQLEIKKADGT 167 (186)
Q Consensus 137 ~~g~~~~~~~~~~~~~~l~~~~v~v~~~~~~ 167 (186)
+. +..+|+++||+|..+..+
T Consensus 158 ~~-----------~~~~l~~aGI~v~~~~~~ 177 (193)
T 1vq2_A 158 PG-----------WDDILRNAGIEVFNVPKK 177 (193)
T ss_dssp TT-----------TTHHHHHTTCEEEECCGG
T ss_pred hH-----------HHHHHHHCCCEEEEeCHH
Confidence 21 136789999999887644
No 12
>2hvw_A Deoxycytidylate deaminase; 3-layer (alpha-beta)-sandwich, protein-liand complex, hydrolase; HET: DCP DDN; 1.67A {Streptococcus mutans} PDB: 2hvv_A*
Probab=100.00 E-value=1.3e-33 Score=225.51 Aligned_cols=125 Identities=21% Similarity=0.290 Sum_probs=107.7
Q ss_pred CCChHHHHHHHHHHHHHhhcccCCCCCcEEEEEeeCCEEEEEEecCcccC---------------CCCcccHHHHHHHHH
Q 029890 26 AVKDRDHKFLTRAVEEAYKGVECGDGGPFGAVVVRNDEVVVSCHNMVLKS---------------TDPTAHAEVTAIREA 90 (186)
Q Consensus 26 ~~~~~d~~~m~~A~~~A~~~~~~~~~~pVGavIv~~g~ii~~g~N~~~~~---------------~~~~~HAE~~Ai~~a 90 (186)
..+++|++||++|+++|+++.. ++ .|||||||++|+||++|+|+++.. .+++.|||++||++|
T Consensus 37 ~~~~~de~~M~~A~~~A~~s~~-~~-~~VGAVIV~dg~Iia~G~N~~~~~~~~c~d~g~~~~~~~~~~t~HAE~~AI~~A 114 (184)
T 2hvw_A 37 NRLSWQDYFMANAELISKRSTC-NR-AYVGAVLVKNNRIIATGYNGGVADTDNCDDVGHEMEDGHCIRTVHAEMNALIQC 114 (184)
T ss_dssp CCCCHHHHHHHHHHHHGGGCCC-TT-CCCEEEEEETTEEEEEEECEESTTSCCHHHHCCCEETTEECSEECHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHhcCC-CC-CCEEEEEEECCEEEEEEECCCcccccccccccccccccccCCccCHHHHHHHHH
Confidence 4456899999999999999974 43 899999999999999999997654 267999999999999
Q ss_pred HHHcCCccCCCceEEeeCCCcHHHHHHHHHhCCCEEEEEeecchhhhcCchhhHHhhhhccccccccceEEEeccc
Q 029890 91 CKKLNQIELSDCEIYASCEPCPMCFGAIHLSRIKRLVYGAKAEAAIAIGFDDFIADALRGTGFYQKAQLEIKKADG 166 (186)
Q Consensus 91 ~~~~~~~~l~~~tly~T~ePC~mCa~ai~~~gI~rVvy~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~v~v~~~~~ 166 (186)
.++ +..+.++|||+|+|||+||+++|+++||+||||+..+++... +.++|+++||+|..+..
T Consensus 115 ~~~--g~~l~g~tlYvTlEPC~mCa~aIi~agI~rVVy~~~~~~~~~------------~~~~L~~aGIeV~~~~~ 176 (184)
T 2hvw_A 115 AKE--GISANNTEIYVTHFPCINCTKALLQAGVKKITYNTAYRIHPF------------AIELMTQKEVEYVQHDV 176 (184)
T ss_dssp HHH--TCCCTTEEEEEEECCCHHHHHHHHHHTEEEEEEEECCSCCHH------------HHHHHHHHTCEEEECCC
T ss_pred HHc--CCCceeEEEEECCCCHHHHHHHHHHHCCCeEEEEecCCCCHH------------HHHHHHHCCCEEEEecc
Confidence 876 467899999999999999999999999999999999875421 25678999999987653
No 13
>2b3z_A Riboflavin biosynthesis protein RIBD; alpha/beta/alpha, deaminase domain and reductase domain, hydrolase, oxidoreductase; 2.41A {Bacillus subtilis} SCOP: c.71.1.2 c.97.1.2 PDB: 2d5n_A* 3ex8_A*
Probab=99.97 E-value=2.8e-31 Score=232.26 Aligned_cols=133 Identities=26% Similarity=0.417 Sum_probs=114.6
Q ss_pred HHHHHHHHHHHHHhhcccCCCC-CcEEEEEeeCCEEEEEEecCcccCCCCcccHHHHHHHHHHHHcCCccCCCceEEeeC
Q 029890 30 RDHKFLTRAVEEAYKGVECGDG-GPFGAVVVRNDEVVVSCHNMVLKSTDPTAHAEVTAIREACKKLNQIELSDCEIYASC 108 (186)
Q Consensus 30 ~d~~~m~~A~~~A~~~~~~~~~-~pVGavIv~~g~ii~~g~N~~~~~~~~~~HAE~~Ai~~a~~~~~~~~l~~~tly~T~ 108 (186)
.|++||++|+++|+++.....+ .|||||||++|+||++|+|+. .++.|||++||++|.+ .+.|+|||||+
T Consensus 13 ~~~~~m~~A~~~A~~~~~~~~~~~~vGaviv~~g~ii~~g~n~~----~~~~HAE~~Ai~~a~~-----~~~g~tlyvTl 83 (373)
T 2b3z_A 13 MEEYYMKLALDLAKQGEGQTESNPLVGAVVVKDGQIVGMGAHLK----YGEAHAEVHAIHMAGA-----HAEGADIYVTL 83 (373)
T ss_dssp CHHHHHHHHHHHHGGGTTSSTTSCCCEEEEESSSSEEEEEECCS----TTSCCHHHHHHHHHGG-----GGTTCEEEESS
T ss_pred hHHHHHHHHHHHHHhhCcccCCCCcEEEEEEECCEEEEEEeCCC----CCCcCHHHHHHHHhhH-----hcCCeEEEEeC
Confidence 4788999999999999754323 569999999999999999975 4799999999999865 47899999999
Q ss_pred CCc------HHHHHHHHHhCCCEEEEEeecchhhhcCchhhHHhhhhccccccccceEEEe--ccchHHHHHHHHHHHhh
Q 029890 109 EPC------PMCFGAIHLSRIKRLVYGAKAEAAIAIGFDDFIADALRGTGFYQKAQLEIKK--ADGTGAAIAEQVFEKTK 180 (186)
Q Consensus 109 ePC------~mCa~ai~~~gI~rVvy~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~v~v~~--~~~~~~~l~~~~~~~~~ 180 (186)
||| +||+++|+++||+||||+..+|+....| ++..+|+++||+|.. ++++|..+.+.||.+.+
T Consensus 84 ePC~~~G~t~~C~~ai~~agi~rVv~~~~d~~~~~~g---------~~~~~l~~~gi~v~~g~l~~e~~~l~~~f~~~~~ 154 (373)
T 2b3z_A 84 EPCSHYGKTPPCAELIINSGIKRVFVAMRDPNPLVAG---------RGISMMKEAGIEVREGILADQAERLNEKFLHFMR 154 (373)
T ss_dssp CCCCCCSSSCCHHHHHHHHTCCEEEESSCCSCTTTTT---------HHHHHHHTTTCEEEECTTHHHHHHHTHHHHHHHH
T ss_pred CCccCcCCChHHHHHHHHhCCCEEEEEecccchhhhh---------HHHHHHHhCCeEEEeCCcccccccccceeeeecc
Confidence 999 8999999999999999999999876655 234567788999874 88889999999998865
No 14
>2hxv_A Diaminohydroxyphosphoribosylaminopyrimidine deami amino-6-(5-phosphoribosylamino)uracil...; oxidoreductase, structural genomics; HET: NDP; 1.80A {Thermotoga maritima} SCOP: c.71.1.2 c.97.1.2
Probab=99.97 E-value=9.8e-31 Score=227.85 Aligned_cols=134 Identities=27% Similarity=0.388 Sum_probs=114.3
Q ss_pred HHHHHHHHHHHHhhcccCCCC-CcEEEEEeeCCEEEEEEecCcccCCCCcccHHHHHHHHHHHHcCCccCCCceEEeeCC
Q 029890 31 DHKFLTRAVEEAYKGVECGDG-GPFGAVVVRNDEVVVSCHNMVLKSTDPTAHAEVTAIREACKKLNQIELSDCEIYASCE 109 (186)
Q Consensus 31 d~~~m~~A~~~A~~~~~~~~~-~pVGavIv~~g~ii~~g~N~~~~~~~~~~HAE~~Ai~~a~~~~~~~~l~~~tly~T~e 109 (186)
.+.||++|+++|+++.....+ .|||||||++|+||++|+|+. .++.|||++||++|++ .+..+.|||||||+|
T Consensus 14 ~~~~m~~al~lA~~~~~~~~~~~~vGaviv~~g~ii~~g~n~~----~~~~HAE~~Ai~~a~~--~~~~~~g~tlYvTlE 87 (360)
T 2hxv_A 14 YETFMKRAIELAKKGLGRVNPNPPVGAVVVKDGRIIAEGFHPY----FGGPHAERMAIESARK--KGEDLRGATLIVTLE 87 (360)
T ss_dssp HHHHHHHHHHHHHTTTTTSTTSCCCEEEEEETTEEEEEEECCS----TTSCCHHHHHHHHHHH--TTCCCTTCEEEEEEC
T ss_pred HHHHHHHHHHHHHHhccccCCCCCEEEEEEECCEEEEEEeCCC----CCCcCHHHHHHHHHHh--cCCCcCCcEEEEecC
Confidence 456999999999998765333 569999999999999999975 5799999999999975 256789999999999
Q ss_pred Cc------HHHHHHHHHhCCCEEEEEeecchhhhcCchhhHHhhhhccccccccceEEEe--ccchHHHHHHHHHHHhh
Q 029890 110 PC------PMCFGAIHLSRIKRLVYGAKAEAAIAIGFDDFIADALRGTGFYQKAQLEIKK--ADGTGAAIAEQVFEKTK 180 (186)
Q Consensus 110 PC------~mCa~ai~~~gI~rVvy~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~v~v~~--~~~~~~~l~~~~~~~~~ 180 (186)
|| +||+++|+++||+||||+..+|+. ..| ++..+|+++||+|.. ++++|..+.+.||.+.+
T Consensus 88 PC~h~g~t~~C~~ai~~agi~rVv~~~~d~~~-~~g---------~g~~~l~~~gi~v~~g~l~~e~~~l~~~f~~~~~ 156 (360)
T 2hxv_A 88 PCDHHGKTPPCTDLIIESGIKTVVIGTRDPNP-VSG---------NGVEKFRNHGIEVIEGVLEEEVKKLCEFFITYVT 156 (360)
T ss_dssp CCCSCSSSCCHHHHHHHHTCCEEEEEECCCCG-GGC---------CHHHHHHTTTCEEEECTTHHHHHHHTHHHHHHHH
T ss_pred cccccCCCHHHHHHHHHhCCCEEEEEecCchh-hhh---------hHHHHHHhCCcEEEECCccccchhccceeeeccc
Confidence 99 799999999999999999999976 544 234567788999874 88889999999998764
No 15
>2g6v_A Riboflavin biosynthesis protein RIBD; RIBD APO structure, structural genomics, structural proteomi europe, spine, hydrolase, oxidoreductase; 2.60A {Escherichia coli} PDB: 2obc_A* 2o7p_A*
Probab=99.97 E-value=6.5e-31 Score=231.96 Aligned_cols=137 Identities=23% Similarity=0.393 Sum_probs=116.5
Q ss_pred CChHHHHHHHHHHHHHhhcccCCCC-CcEEEEEeeCCEEEEEEecCcccCCCCcccHHHHHHHHHHHHcCCccCCCceEE
Q 029890 27 VKDRDHKFLTRAVEEAYKGVECGDG-GPFGAVVVRNDEVVVSCHNMVLKSTDPTAHAEVTAIREACKKLNQIELSDCEIY 105 (186)
Q Consensus 27 ~~~~d~~~m~~A~~~A~~~~~~~~~-~pVGavIv~~g~ii~~g~N~~~~~~~~~~HAE~~Ai~~a~~~~~~~~l~~~tly 105 (186)
++++|++||++|+++|+++.....+ .|||||||++|+||++|+|+. .++.|||++||++|.++ +.|+|||
T Consensus 26 ~~~~d~~~m~~A~~~A~~~~~~~~~~~~vGaviv~~g~ii~~g~n~~----~g~~HAE~~Ai~~a~~~-----~~g~tly 96 (402)
T 2g6v_A 26 IQGQDEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQR----AGEPHAEVHALRMAGEK-----AKGATAY 96 (402)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTTCTTSCCCEEEEEETTEEEEEEECCC----TTSCCHHHHHHHHHGGG-----GGSSCEE
T ss_pred CCHHHHHHHHHHHHHHHhhCccCCCCCCEEEEEEECCEEEEEEeCCC----CCccHHHHHHHHHhhHh-----cCCeEEE
Confidence 4568999999999999999754333 569999999999999999975 47999999999998654 6899999
Q ss_pred eeCCCc------HHHHHHHHHhCCCEEEEEeecchhhhcCchhhHHhhhhccccccccceEEEe--ccchHHHHHHHHHH
Q 029890 106 ASCEPC------PMCFGAIHLSRIKRLVYGAKAEAAIAIGFDDFIADALRGTGFYQKAQLEIKK--ADGTGAAIAEQVFE 177 (186)
Q Consensus 106 ~T~ePC------~mCa~ai~~~gI~rVvy~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~v~v~~--~~~~~~~l~~~~~~ 177 (186)
||+||| |||+++|+++||+||||+..+|+....| +|..+|+++||+|.. ++++|..+.+.||.
T Consensus 97 vt~ePC~h~G~tp~C~~ai~~agi~rVv~~~~~~~~~~~g---------~g~~~l~~~gi~v~~g~l~~e~~~l~~~f~~ 167 (402)
T 2g6v_A 97 VTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAG---------RGLYRLQQAGIDVSHGLMMSEAEQLNKGFLK 167 (402)
T ss_dssp ESSCCC-------CCHHHHHHTTCSCEEESSCCCSCSSST---------THHHHHHHTTCCEEECTTTTHHHHHTHHHHH
T ss_pred EeCCCcCCCCCchHHHHHHHHhCCCEEEEEecCCCccccc---------hHHHHHHhCCcEEEeCCcchhhHHHhhhhhh
Confidence 999999 7999999999999999999998875544 234567888998864 78999999999999
Q ss_pred Hhhc
Q 029890 178 KTKA 181 (186)
Q Consensus 178 ~~~~ 181 (186)
+.+.
T Consensus 168 ~~~~ 171 (402)
T 2g6v_A 168 RMRT 171 (402)
T ss_dssp HHHS
T ss_pred cccc
Confidence 8653
No 16
>3g8q_A Predicted RNA-binding protein, contains thump domain; cytidine deaminase, ferredoxin-like domain; 2.40A {Methanopyrus kandleri}
Probab=99.92 E-value=4.5e-26 Score=185.92 Aligned_cols=95 Identities=16% Similarity=0.298 Sum_probs=77.5
Q ss_pred HhhcccCCCCCcEEEEEeeCCEEEEEEecCcccCCCCcccHHHHHHHHHHHHcCCccCCCceEEeeCCCcHHHHHHHHHh
Q 029890 42 AYKGVECGDGGPFGAVVVRNDEVVVSCHNMVLKSTDPTAHAEVTAIREACKKLNQIELSDCEIYASCEPCPMCFGAIHLS 121 (186)
Q Consensus 42 A~~~~~~~~~~pVGavIv~~g~ii~~g~N~~~~~~~~~~HAE~~Ai~~a~~~~~~~~l~~~tly~T~ePC~mCa~ai~~~ 121 (186)
++.....++ .|||||||++|+||+.|.+ ++.|||++||+ +..+.|||||+|+|||+||+++|+|+
T Consensus 13 ~k~~~t~PN-PpVGAVIVkDGeIIA~Ge~-------gTaHAEInAIr-------g~~L~GaTLYVTLEPC~MCAgAII~A 77 (278)
T 3g8q_A 13 KKILNEIPK-RTVTAALLEGGEIVAVEEA-------DDEHAERKLVR-------RHDVEGKVVFVTARPCLYCARELAEA 77 (278)
T ss_dssp HHHHHHSCC-SSCEEEEEETTEEEEEEEC-------SSSCHHHHHHH-------HSCCTTCEEEESSCCCHHHHHHHHTT
T ss_pred hHHhccCCC-CCEEEEEEECCEEEEecCC-------CCCCHHHHHhC-------CCCCCCcEEEEeCCchHHHHHHHHHh
Confidence 333333443 6799999999999999932 89999999997 34679999999999999999999999
Q ss_pred CCCEEEEEeecchhhhcCchhhHHhhhhccccccccceEEEecc
Q 029890 122 RIKRLVYGAKAEAAIAIGFDDFIADALRGTGFYQKAQLEIKKAD 165 (186)
Q Consensus 122 gI~rVvy~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~v~v~~~~ 165 (186)
||+||||+..+... |..+|+++||+|..++
T Consensus 78 GIkRVVYGa~~~G~--------------G~e~LreAGIEV~~L~ 107 (278)
T 3g8q_A 78 GVAGVVYLGRGRGL--------------GPYYLARSGVEVVEVH 107 (278)
T ss_dssp TCCEEEEEECSSCC--------------HHHHHHTTTCEEEEEE
T ss_pred CCCEEEEEecCCCh--------------hHHHHHHCCCEEEEec
Confidence 99999999975421 3457889999987653
No 17
>2nyt_A Probable C->U-editing enzyme apobec-2; cytidine deaminase, zinc-ION binding, hydrolase; 2.50A {Homo sapiens} PDB: 2rpz_A
Probab=99.86 E-value=2.9e-21 Score=154.62 Aligned_cols=106 Identities=14% Similarity=0.114 Sum_probs=84.3
Q ss_pred CcEEEEEee--C---CEEEEEEecCcccCCCCcccHHHHHHHHHHHHcCCccCCCceEEeeCCCcHHHHHHHHHh-----
Q 029890 52 GPFGAVVVR--N---DEVVVSCHNMVLKSTDPTAHAEVTAIREACKKLNQIELSDCEIYASCEPCPMCFGAIHLS----- 121 (186)
Q Consensus 52 ~pVGavIv~--~---g~ii~~g~N~~~~~~~~~~HAE~~Ai~~a~~~~~~~~l~~~tly~T~ePC~mCa~ai~~~----- 121 (186)
..+.|..|. + +.||++|+|+. .+++.|||++||++|+++++.....|+|+|||+|||+||+++|+++
T Consensus 33 ~tyLcy~v~~~~~~~~~ii~~G~~~~---~~~~~HAE~~Ai~~a~~~l~~~~~~g~TlYvTlePC~~Ca~aIi~al~~~~ 109 (190)
T 2nyt_A 33 KTFLCYVVEAQGKGGQVQASRGYLED---EHAAAHAEEAFFNTILPAFDPALRYNVTWYVSSSPCAACADRIIKTLSKTK 109 (190)
T ss_pred ceEEEEEEEecCCCCCCeEEEEECCC---CCCCcCHHHHHHHHHHHhcCccccCCeEEEEEcChHHHHHHHHHHhhhhcC
Confidence 568999997 2 56999999965 4689999999999998765433334999999999999999999999
Q ss_pred CCCEEEEEeecchhhhcCchhhHHhhhhccccccccceEEEeccch
Q 029890 122 RIKRLVYGAKAEAAIAIGFDDFIADALRGTGFYQKAQLEIKKADGT 167 (186)
Q Consensus 122 gI~rVvy~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~v~v~~~~~~ 167 (186)
||++|||+..++.. ++.. ...|...|+++||+|..++.+
T Consensus 110 gI~rVV~~~~d~~~-----~~p~--~~~g~~~L~~aGI~V~~~~~~ 148 (190)
T 2nyt_A 110 NLRLLILVGRLFMW-----EEPE--IQAALKKLKEAGCKLRIMKPQ 148 (190)
T ss_pred CccEEEEEeecCCc-----CChH--HHHHHHHHHHCCCEEEEecHH
Confidence 99999999876531 1111 125677899999999987754
No 18
>1uwz_A Cytidine deaminase; CDD, tetramer, zinc binding, pyrimidine metabolism, salvage, hydrolase; HET: THU; 1.99A {Bacillus subtilis} SCOP: c.97.1.1 PDB: 1ux0_A* 1jtk_A* 1ux1_A*
Probab=99.76 E-value=3.9e-18 Score=129.82 Aligned_cols=90 Identities=19% Similarity=0.188 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHHhhcccCCCCCcEEEEEee-CCEEEEEEecCcccCCCCcccHHHHHHHHHHHHcCCccCCCceEEee--
Q 029890 31 DHKFLTRAVEEAYKGVECGDGGPFGAVVVR-NDEVVVSCHNMVLKSTDPTAHAEVTAIREACKKLNQIELSDCEIYAS-- 107 (186)
Q Consensus 31 d~~~m~~A~~~A~~~~~~~~~~pVGavIv~-~g~ii~~g~N~~~~~~~~~~HAE~~Ai~~a~~~~~~~~l~~~tly~T-- 107 (186)
|+.+|+.|++.++++..+.+.+||||+|+. +|+|+ +|+|..+...+++.|||+.||.+|... +...+..+++|++
T Consensus 3 ~~~l~~~A~~aa~~ayapYs~~~VGAal~~~dG~i~-~G~Nvena~~~~t~cAE~~Ai~~A~~~-G~~~~~~~~l~~~~~ 80 (136)
T 1uwz_A 3 RQELITEALKARDMAYAPYSKFQVGAALLTKDGKVY-RGCNIENAAYSMCNCAEATALFKAVSE-GDTEFQMLAVAADTP 80 (136)
T ss_dssp HHHHHHHHHHHHTTCBCTTTCCCEEEEEEETTSCEE-EEECBCCSSGGGCBCHHHHHHHHHHHH-TCCCEEEEEEEESCS
T ss_pred HHHHHHHHHHHHHhccCccCCCCEEEEEEeCCCeEE-EEeCcccCCCCCccCHHHHHHHHHHHC-CCCCeEEEEEEeCCC
Confidence 677999999999999998667999999997 78888 799999999999999999999999987 7788899999995
Q ss_pred --CCCcHHHHHHHHHhC
Q 029890 108 --CEPCPMCFGAIHLSR 122 (186)
Q Consensus 108 --~ePC~mCa~ai~~~g 122 (186)
++||.||.++|.+.+
T Consensus 81 ~~~~PCg~Crq~l~e~~ 97 (136)
T 1uwz_A 81 GPVSPCGACRQVISELC 97 (136)
T ss_dssp SSCCCCHHHHHHHHHHS
T ss_pred CccCHHHHHHHHHHHcC
Confidence 899999999999997
No 19
>2fr5_A Cytidine deaminase; tetrahydrouridine, protein-inhibitor COM alternate conformation of Arg68, hydrolase; HET: TYU; 1.48A {Mus musculus} SCOP: c.97.1.1 PDB: 1zab_A* 2fr6_A* 1mq0_A*
Probab=99.73 E-value=3.6e-17 Score=125.87 Aligned_cols=94 Identities=18% Similarity=0.181 Sum_probs=84.6
Q ss_pred CChHHHHHHHHHHHHHhhcccCCCCCcEEEEEee-CCEEEEEEecCcccCCCCcccHHHHHHHHHHHHcCCccCCCceEE
Q 029890 27 VKDRDHKFLTRAVEEAYKGVECGDGGPFGAVVVR-NDEVVVSCHNMVLKSTDPTAHAEVTAIREACKKLNQIELSDCEIY 105 (186)
Q Consensus 27 ~~~~d~~~m~~A~~~A~~~~~~~~~~pVGavIv~-~g~ii~~g~N~~~~~~~~~~HAE~~Ai~~a~~~~~~~~l~~~tly 105 (186)
.+++++++|+.|++++++++...+.+||||+|+. +|+|+ +|.|..+...+.+.|||+.||.+|... +...+..+.+|
T Consensus 11 ~~~~~~~L~~~A~~a~~~ayapys~f~VGAal~~~dG~i~-~G~NvEnas~~~t~cAE~~Ai~~A~~~-G~~~l~~i~v~ 88 (146)
T 2fr5_A 11 EPEHVQRLLLSSREAKKSAYCPYSRFPVGAALLTGDGRIF-SGCNIENACYPLGVCAERTAIQKAISE-GYKDFRAIAIS 88 (146)
T ss_dssp CCHHHHHHHHHHHHHHTTCBCTTTCCCEEEEEEETTSCEE-EEECBCCSSGGGCBCHHHHHHHHHHHT-TCCCEEEEEEE
T ss_pred CHHHHHHHHHHHHHHHHhcCCCcCCCCEEEEEEeCCCcEE-EEEeccccCCCCCcCHHHHHHHHHHhC-CCCceEEEEEE
Confidence 3466788999999999999988777999999996 78877 799999988899999999999999887 77788999999
Q ss_pred ee-----CCCcHHHHHHHHHhC
Q 029890 106 AS-----CEPCPMCFGAIHLSR 122 (186)
Q Consensus 106 ~T-----~ePC~mCa~ai~~~g 122 (186)
++ .+||.||.++|.+.+
T Consensus 89 ~~~~~~~~~PCG~Crq~l~E~~ 110 (146)
T 2fr5_A 89 SDLQEEFISPCGACRQVMREFG 110 (146)
T ss_dssp ESCSSSCCCCCHHHHHHHHHTC
T ss_pred eCCCCcccCCCHHHHHHHHHhC
Confidence 98 899999999999998
No 20
>2z3g_A Blasticidin-S deaminase; hydrolase, cytidine deaminase family, zinc, tetramer; HET: TRE; 1.50A {Aspergillus terreus} SCOP: c.97.1.1 PDB: 1wn6_A* 1wn5_A* 2z3h_A* 2z3j_A 2z3i_A*
Probab=99.68 E-value=5.5e-16 Score=117.05 Aligned_cols=97 Identities=10% Similarity=0.083 Sum_probs=82.6
Q ss_pred CChHHHHHHHHHHHHHhhcccCCCCCcEEEEEee-CCEEEEEEecCcccCCCCcccHHHHHHHHHHHHcCCccCCCceEE
Q 029890 27 VKDRDHKFLTRAVEEAYKGVECGDGGPFGAVVVR-NDEVVVSCHNMVLKSTDPTAHAEVTAIREACKKLNQIELSDCEIY 105 (186)
Q Consensus 27 ~~~~d~~~m~~A~~~A~~~~~~~~~~pVGavIv~-~g~ii~~g~N~~~~~~~~~~HAE~~Ai~~a~~~~~~~~l~~~tly 105 (186)
+++.|+++|+.|+++++++... +.+||||+|+. ||+|+ +|.|.. ..+++.|||+.||.+|... +...++..++|
T Consensus 3 l~~~~~~L~~~A~~a~~~ay~~-s~f~VGAal~~~dG~i~-~G~NvE--~~~~t~cAE~~Ai~~A~~~-G~~~~~~i~vv 77 (130)
T 2z3g_A 3 LSQEESTLIERATATINSIPIS-EDYSVASAALSSDGRIF-TGVNVY--HFTGGPCAELVVLGTAAAA-AAGNLTCIVAI 77 (130)
T ss_dssp CCHHHHHHHHHHHHHHHHSCCC-SSSCEEEEEEETTSCEE-EEECCC--CTTTCCCHHHHHHHHHHHT-TCCCEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHHhhCCC-CCCCEEEEEEecCCeEE-EEeccc--cCCcccCHHHHHHHHHHHc-CCCceEEEEEE
Confidence 6778899999999999999876 55999999996 78876 699987 5788999999999999886 66678889999
Q ss_pred e-----eCCCcHHHHHHHHHhCCCEEEE
Q 029890 106 A-----SCEPCPMCFGAIHLSRIKRLVY 128 (186)
Q Consensus 106 ~-----T~ePC~mCa~ai~~~gI~rVvy 128 (186)
+ +++||.||.+.|.+.+-.-.|+
T Consensus 78 ~~~~~~~~~PCG~Crq~l~e~~~~~~v~ 105 (130)
T 2z3g_A 78 GNENRGILSPCGRCRQVLLDLHPGIKAI 105 (130)
T ss_dssp ETTTTEEECCCHHHHHHHHHHCTTCEEE
T ss_pred ECCCCCccCcCHHHHHHHHHhCCCCEEE
Confidence 8 7899999999999997443333
No 21
>3b8f_A Putative blasticidin S deaminase; cytidine deaminase, structural genomics, MCSG, protein structure initiative; 1.90A {Bacillus anthracis}
Probab=99.48 E-value=2e-13 Score=104.46 Aligned_cols=97 Identities=10% Similarity=-0.008 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHHHhhcccCCCCCcEEEEEee-CCEEEEEEecCcccCCCCcccHHHHHHHHHHHHcCCccCCCceEEe--
Q 029890 30 RDHKFLTRAVEEAYKGVECGDGGPFGAVVVR-NDEVVVSCHNMVLKSTDPTAHAEVTAIREACKKLNQIELSDCEIYA-- 106 (186)
Q Consensus 30 ~d~~~m~~A~~~A~~~~~~~~~~pVGavIv~-~g~ii~~g~N~~~~~~~~~~HAE~~Ai~~a~~~~~~~~l~~~tly~-- 106 (186)
.|+.+++.|++.+++++.+++ ||||+|+. +|+|+ +|+|..+...+++.|||+.||.+|... +...+....++.
T Consensus 3 ~~~~L~~~A~~a~~~ayaPyS--~VGAAl~~~dG~i~-~G~NvEnas~~~~lcAEr~Ai~~a~~~-G~~~~~~~~v~~~~ 78 (142)
T 3b8f_A 3 IEQQLYDVVKQLIEQRYPNDW--GGAAAIRVEDGTIY-TSVAPDVINASTELCMETGAILEAHKF-QKKVTHSICLAREN 78 (142)
T ss_dssp HHHHHHHHHHHHHHHHCSSSC--EEEEEEEETTSCEE-EECCCCCSSGGGCCCTTHHHHHHHHHH-TCCEEEEEEEEESS
T ss_pred HHHHHHHHHHHHHHhcCCCCC--CEEEEEEeCCCcEE-EEECcccccCCcccCHHHHHHHHHHHC-CCCcEEEEEEEecC
Confidence 467899999999999999886 99999996 78776 899999998899999999999999876 444445566665
Q ss_pred ------eCCCcHHHHHHHHHhCCCEEEEEe
Q 029890 107 ------SCEPCPMCFGAIHLSRIKRLVYGA 130 (186)
Q Consensus 107 ------T~ePC~mCa~ai~~~gI~rVvy~~ 130 (186)
++.||.+|.+.|.+.+-.-.|+..
T Consensus 79 ~~~~~~~~sPCG~CRq~l~e~~~~~~v~~~ 108 (142)
T 3b8f_A 79 EHSELKVLSPCGVCQERLFYWGPEVQCAIT 108 (142)
T ss_dssp TTSCCEECCCCHHHHHHHGGGCTTCEEECC
T ss_pred CCCCCCCCCcHHHHHHHHHHhCCCCEEEEE
Confidence 456999999999999855445543
No 22
>1r5t_A Cytidine deaminase; zinc dependent deaminase, RNA editing, apobec-1 related protein, hydrolase; 2.00A {Saccharomyces cerevisiae} SCOP: c.97.1.1
Probab=99.44 E-value=7.9e-13 Score=101.11 Aligned_cols=94 Identities=16% Similarity=0.128 Sum_probs=80.3
Q ss_pred CChHHHHHHHHHHHHHhhcccCCCCCcEEEEEee-CCEEEEEEecCcccCCCCcccHHHHHHHHHHHHcCCcc-CCCceE
Q 029890 27 VKDRDHKFLTRAVEEAYKGVECGDGGPFGAVVVR-NDEVVVSCHNMVLKSTDPTAHAEVTAIREACKKLNQIE-LSDCEI 104 (186)
Q Consensus 27 ~~~~d~~~m~~A~~~A~~~~~~~~~~pVGavIv~-~g~ii~~g~N~~~~~~~~~~HAE~~Ai~~a~~~~~~~~-l~~~tl 104 (186)
.++.++.+++.|++.+++++.+.+.+||||+|+. +|+|+ +|.|..+...+++.|||+.||.++... +... +....+
T Consensus 7 ~~~~~~~L~~~A~~a~~~ayaPYS~f~VGAAl~~~dG~i~-~G~NvEnasy~~t~cAEr~Ai~~a~~~-G~~~~i~~i~v 84 (142)
T 1r5t_A 7 EDRQLEALKRAALKACELSYSPYSHFRVGCSILTNNDVIF-TGANVENASYSNCICAERSAMIQVLMA-GHRSGWKCMVI 84 (142)
T ss_dssp CHHHHHHHHHHHHHHGGGCBCTTTCCCEEEEEECTTSCEE-EEECBCCSSGGGCBCHHHHHHHHHHHT-TCCSCCCEEEE
T ss_pred chhHHHHHHHHHHHHHHhcCCCcCCCCEEEEEEeCCCCEE-EEEeecccCCCCCcCHHHHHHHHHHHc-CCCCceEEEEE
Confidence 3456778999999999999998777999999997 67655 799999888899999999999999876 3444 888888
Q ss_pred Eee----C-CCcHHHHHHHHHhC
Q 029890 105 YAS----C-EPCPMCFGAIHLSR 122 (186)
Q Consensus 105 y~T----~-ePC~mCa~ai~~~g 122 (186)
+.. . .||.+|.+.|.+.+
T Consensus 85 v~~~~~~~~~PCG~CRq~l~e~~ 107 (142)
T 1r5t_A 85 CGDSEDQCVSPCGVCRQFINEFV 107 (142)
T ss_dssp EESCSSSCCCCCHHHHHHHHTTS
T ss_pred EeCCCCcccCHHHHHHHHHHHhC
Confidence 873 5 89999999999987
No 23
>2d30_A Cytidine deaminase; purines, pyrimidines, nucleosides, nucleotides, salvage of nucleosides and nucleotides, structural genomics; 2.40A {Bacillus anthracis} SCOP: c.97.1.1
Probab=99.39 E-value=2.5e-12 Score=98.19 Aligned_cols=92 Identities=20% Similarity=0.173 Sum_probs=76.8
Q ss_pred hHHHHHHHHHHHHHhhcccCCCCCcEEEEEee-CCEEEEEEecCcccCCCCcccHHHHHHHHHHHHcCCccCCCceEEee
Q 029890 29 DRDHKFLTRAVEEAYKGVECGDGGPFGAVVVR-NDEVVVSCHNMVLKSTDPTAHAEVTAIREACKKLNQIELSDCEIYAS 107 (186)
Q Consensus 29 ~~d~~~m~~A~~~A~~~~~~~~~~pVGavIv~-~g~ii~~g~N~~~~~~~~~~HAE~~Ai~~a~~~~~~~~l~~~tly~T 107 (186)
+.+.++++.|++.+++++.+.+.+||||+|+. +|+| .+|.|..+.....+.|||+.||.+|... +...+....++..
T Consensus 10 ~~~~~L~~~A~~a~~~AyaPYS~f~VGAAll~~dG~i-~~G~NvEnasy~~t~CAEr~Ai~~Avs~-G~~~~~aiav~~~ 87 (141)
T 2d30_A 10 MNSKQLIQEAIEARKQAYVPYSKFQVGAALLTQDGKV-YRGCNVENASYGLCNCAERTALFKAVSE-GDKEFVAIAIVAD 87 (141)
T ss_dssp CCHHHHHHHHHHHHTTCBCTTTCCCEEEEEEETTCCE-EEEECBCCSSGGGCBCHHHHHHHHHHHT-TCCCEEEEEEEES
T ss_pred cCHHHHHHHHHHHHHhcCCCcCCCcEEEEEEeCCCCE-EEeeccccCCCCcccCHHHHHHHHHHHC-CCCceEEEEEEeC
Confidence 44677999999999999998777999999997 6765 5999999888889999999999999876 4445555555554
Q ss_pred ----CCCcHHHHHHHHHhC
Q 029890 108 ----CEPCPMCFGAIHLSR 122 (186)
Q Consensus 108 ----~ePC~mCa~ai~~~g 122 (186)
..||.+|.+.|.+.+
T Consensus 88 ~~~~~~PCG~CRQ~l~E~~ 106 (141)
T 2d30_A 88 TKRPVPPCGACRQVMVELC 106 (141)
T ss_dssp CSSCCCCCHHHHHHHHHHS
T ss_pred CCCccCcCHHHHHHHHHhc
Confidence 679999999999986
No 24
>3r2n_A Cytidine deaminase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.30A {Mycobacterium leprae} SCOP: c.97.1.0
Probab=99.38 E-value=1.6e-12 Score=98.96 Aligned_cols=95 Identities=16% Similarity=0.097 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHHHhhcccCCCCCcEEEEEee-CCEEEEEEecCcccCCCCcccHHHHHHHHHHHHcCCccCCCceEEee-
Q 029890 30 RDHKFLTRAVEEAYKGVECGDGGPFGAVVVR-NDEVVVSCHNMVLKSTDPTAHAEVTAIREACKKLNQIELSDCEIYAS- 107 (186)
Q Consensus 30 ~d~~~m~~A~~~A~~~~~~~~~~pVGavIv~-~g~ii~~g~N~~~~~~~~~~HAE~~Ai~~a~~~~~~~~l~~~tly~T- 107 (186)
+++++++.|++.+++++.+.+.+||||+|+. +|+| .+|.|..+.....+.|||+.||.+|... +...+. .++++
T Consensus 9 ~~~~L~~~A~~a~~~ayaPyS~f~VGAAll~~dG~i-~~G~NvEnasy~~t~CAEr~Ai~~Av~~-G~~~i~--aiav~~ 84 (138)
T 3r2n_A 9 NWDTLQKAAVAARANSYAPYSNFPVGVAGFVNDGRL-ITGVNVENASYGLALCAECSMISALYAT-GGGRLV--AVYCVD 84 (138)
T ss_dssp CHHHHHHHHHHHHTTCBCTTTCCCCEEEEEETTSCE-EEEECBCCSSGGGCBCHHHHHHHHHHHT-TCCCEE--EEEEEC
T ss_pred hHHHHHHHHHHHHHhccCCCCCCcEEEEEEeCCCcE-EEEEcccccCCCCCcCHHHHHHHHHHHc-CCCceE--EEEEEc
Confidence 4567999999999999988888999999997 6776 5999999888889999999999999875 333343 35555
Q ss_pred -----CCCcHHHHHHHHHhCCCEEEE
Q 029890 108 -----CEPCPMCFGAIHLSRIKRLVY 128 (186)
Q Consensus 108 -----~ePC~mCa~ai~~~gI~rVvy 128 (186)
..||.+|.+.|.+.+-..|+.
T Consensus 85 ~~~~~~~PCG~CRQ~l~E~~~~~i~v 110 (138)
T 3r2n_A 85 GNGDSLMPCGRCRQLLYEHGGPELKI 110 (138)
T ss_dssp TTSCBCCCCHHHHHHHHHHHCTTCEE
T ss_pred CCCCcCCCCHHHHHHHHHhCCCCEEE
Confidence 789999999999987333443
No 25
>3mpz_A Cytidine deaminase; ssgcid, structu genomics, seattle structural genomics center for infectious hydrolase; 1.70A {Mycobacterium smegmatis} PDB: 3ijf_X 4f3w_A
Probab=99.27 E-value=1.5e-11 Score=94.65 Aligned_cols=91 Identities=16% Similarity=0.113 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHHHhhcccCCCCCcEEEEEee-CCEEEEEEecCcccCCCCcccHHHHHHHHHHHHcCCccCCCceEEe--
Q 029890 30 RDHKFLTRAVEEAYKGVECGDGGPFGAVVVR-NDEVVVSCHNMVLKSTDPTAHAEVTAIREACKKLNQIELSDCEIYA-- 106 (186)
Q Consensus 30 ~d~~~m~~A~~~A~~~~~~~~~~pVGavIv~-~g~ii~~g~N~~~~~~~~~~HAE~~Ai~~a~~~~~~~~l~~~tly~-- 106 (186)
+++.+++.|++.+++++.+.+.++|||+|.. +|+|+ +|.|..+.....+.|||..||.+|... +...+....++.
T Consensus 24 ~~~~L~~~A~~a~~~AYaPYS~F~VGAAll~~dG~i~-tG~NvEnasy~~t~CAEr~Ai~~Avs~-G~~~i~aiavv~~~ 101 (150)
T 3mpz_A 24 NWNALRSKAIEVSRHAYAPYSGFPVGAAALVDDGRTV-TGCNVENVSYGLGLCAECAVVCALHSG-GGGRLVALSCVGPD 101 (150)
T ss_dssp CHHHHHHHHHHHHTTCBCTTTCCCCEEEEEETTSCEE-EEECBCCSSGGGCBCHHHHHHHHHHHT-TCCCEEEEEEECTT
T ss_pred HHHHHHHHHHHHHHhccCCCCCCCEEEEEEeCCCCEE-EEEecccccCCccccHHHHHHHHHHHc-CCCceEEEEEEcCC
Confidence 3567999999999999988888999999987 67765 999999988888999999999998875 444444444443
Q ss_pred --eCCCcHHHHHHHHHhC
Q 029890 107 --SCEPCPMCFGAIHLSR 122 (186)
Q Consensus 107 --T~ePC~mCa~ai~~~g 122 (186)
...||.+|.+.|.+.+
T Consensus 102 ~~~~~PCG~CRQ~L~Ef~ 119 (150)
T 3mpz_A 102 GGVLMPCGRCRQVLLEHG 119 (150)
T ss_dssp SCBCCCCHHHHHHHHHHH
T ss_pred CCccCCCHHHHHHHHHhC
Confidence 3689999999999986
No 26
>1ctt_A Cytidine deaminase; hydrolase; HET: DHZ; 2.20A {Escherichia coli} SCOP: c.97.1.1 c.97.1.1 PDB: 1aln_A* 1af2_A* 1ctu_A*
Probab=99.16 E-value=1.6e-10 Score=97.79 Aligned_cols=94 Identities=11% Similarity=0.027 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHhhcccCCCCCcEEEEEeeCCEEEEEEecCcccCCCCcccHHHHHHHHHHHH-cCCccCCCceEEeeCC
Q 029890 31 DHKFLTRAVEEAYKGVECGDGGPFGAVVVRNDEVVVSCHNMVLKSTDPTAHAEVTAIREACKK-LNQIELSDCEIYASCE 109 (186)
Q Consensus 31 d~~~m~~A~~~A~~~~~~~~~~pVGavIv~~g~ii~~g~N~~~~~~~~~~HAE~~Ai~~a~~~-~~~~~l~~~tly~T~e 109 (186)
|..+++.|++.+++++.+++.+||||+|+.++..|.+|.|..+...+++.|||..||.++... ++...++...++...+
T Consensus 188 ~~~L~~~A~~a~~~ayaPYS~f~VGAAl~~~dG~i~tG~NvEnasy~~tlCAEr~Ai~~av~~G~~~~~i~~i~vv~~~~ 267 (294)
T 1ctt_A 188 GDALSQAAIAAANRSHMPYSKSPSGVALECKDGRIFSGSYAENAAFNPTLPPLQGALILLNLKGYDYPDIQRAVLAEKAD 267 (294)
T ss_dssp SSHHHHHHHHHHHTCBCTTTCCCEEEEEEETTSCEEEEECBCCTTSTTCBCHHHHHHHHHHHTTCCGGGEEEEEEEECTT
T ss_pred hHHHHHHHHHHHHhcCCCcCCCceEEEEEeCCCCEEEEEeeecCCCCCccCHHHHHHHHHHHcCCCcCCEEEEEEEecCC
Confidence 357999999999999999888999999997433678999999999999999999999998775 1124677888888776
Q ss_pred ----CcHHHHHHHHHhCCC
Q 029890 110 ----PCPMCFGAIHLSRIK 124 (186)
Q Consensus 110 ----PC~mCa~ai~~~gI~ 124 (186)
||.||.+.|...+-.
T Consensus 268 ~~~sPCG~CRq~L~ef~~~ 286 (294)
T 1ctt_A 268 APLIQWDATSATLKALGCH 286 (294)
T ss_dssp CSSCCHHHHHHHHHHHTCC
T ss_pred CCcCccHHHHHHHHHHCCC
Confidence 999999999998743
No 27
>1ctt_A Cytidine deaminase; hydrolase; HET: DHZ; 2.20A {Escherichia coli} SCOP: c.97.1.1 c.97.1.1 PDB: 1aln_A* 1af2_A* 1ctu_A*
Probab=98.93 E-value=2.2e-09 Score=90.90 Aligned_cols=89 Identities=20% Similarity=0.126 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHHhhcccCCCCCcEEEEEee-CCEEEEEEecCcccC--CCCcccHHHHHHHHHHHHcCCccCCCceEEe
Q 029890 30 RDHKFLTRAVEEAYKGVECGDGGPFGAVVVR-NDEVVVSCHNMVLKS--TDPTAHAEVTAIREACKKLNQIELSDCEIYA 106 (186)
Q Consensus 30 ~d~~~m~~A~~~A~~~~~~~~~~pVGavIv~-~g~ii~~g~N~~~~~--~~~~~HAE~~Ai~~a~~~~~~~~l~~~tly~ 106 (186)
+++.+++.|.+...+++.+.+.++|||+++. +|+| .+|.|..+.+ ...+.|||..||.+|... +...+ ..+.+
T Consensus 49 ~~~ll~~~a~~a~~~AyaPyS~f~VGAall~~dG~i-~~G~NvEnas~~~~~t~CAEr~Ai~~A~~~-G~~~~--~~iav 124 (294)
T 1ctt_A 49 EDALAFALLPLAAACARTPLSNFNVGAIARGVSGTW-YFGANMEFIGATMQQTVHAEQSAISHAWLS-GEKAL--AAITV 124 (294)
T ss_dssp HHHHHHHHHHHHHHTCBCTTTCCCCEEEEEETTSCE-EEEECBCCTTSCGGGCBCHHHHHHHHHHHT-TCCCE--EEEEE
T ss_pred HHHHHHHHHHHHHHhccCccCCCcEEEEEEeCCCCE-EEEEcCCccCccCCCccCHHHHHHHHHHHc-CCCcE--EEEEE
Confidence 4555555665666678888777999999997 6765 5999988765 346899999999999875 33332 45667
Q ss_pred eCCCcHHHHHHHHHhC
Q 029890 107 SCEPCPMCFGAIHLSR 122 (186)
Q Consensus 107 T~ePC~mCa~ai~~~g 122 (186)
+..||.+|.+.|.+.+
T Consensus 125 ~~~PCG~CRQ~l~E~~ 140 (294)
T 1ctt_A 125 NYTPCGHCRQFMNELN 140 (294)
T ss_dssp SSCCCHHHHHHHTTBT
T ss_pred EcCCCHHHHHHHHHhC
Confidence 7899999999999986
No 28
>3dmo_A Cytidine deaminase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, hydrolase; 1.60A {Burkholderia pseudomallei}
Probab=98.91 E-value=1.3e-08 Score=77.30 Aligned_cols=93 Identities=22% Similarity=0.153 Sum_probs=73.4
Q ss_pred hHHHHHHHHHHHHHhhcccCCCCCcEEEEEeeCCEEEEEEecCcccCCCCcccHHHHHHHHHHHHcCCc--cCCCceEEe
Q 029890 29 DRDHKFLTRAVEEAYKGVECGDGGPFGAVVVRNDEVVVSCHNMVLKSTDPTAHAEVTAIREACKKLNQI--ELSDCEIYA 106 (186)
Q Consensus 29 ~~d~~~m~~A~~~A~~~~~~~~~~pVGavIv~~g~ii~~g~N~~~~~~~~~~HAE~~Ai~~a~~~~~~~--~l~~~tly~ 106 (186)
+.+.++++.|.+..++++.+.+.++|||++..++.-|.+|.|..+.....+.|||..||.+|... +.. .+....+..
T Consensus 9 ~~~~~L~~~A~~a~~~AyaPYS~F~VGAAll~~dG~iytG~NVEnasy~~t~CAEr~Ai~~Avs~-G~~~~~i~aiavv~ 87 (138)
T 3dmo_A 9 MTHHALIEAAKAAREKAYAPYSNFKVGAALVTNDGKVFHGCNVENASYGLCNCAERTALFSALAA-GYRPGEFAAIAVVG 87 (138)
T ss_dssp CCHHHHHHHHHHHHTTCBCTTTCCCEEEEEEETTSCEEEEECBCCSSGGGCBCHHHHHHHHHHHT-TCCTTCEEEEEEEE
T ss_pred ccHHHHHHHHHHHHHhccCCcCCCCEEEEEEeCCCCEEEEEeecccccccccCHHHHHHHHHHHc-CCCcccEEEEEEEc
Confidence 44678899999999999999988999999998444468999999888888999999999998775 222 233222221
Q ss_pred ----eCCCcHHHHHHHHHhC
Q 029890 107 ----SCEPCPMCFGAIHLSR 122 (186)
Q Consensus 107 ----T~ePC~mCa~ai~~~g 122 (186)
...||..|.+.|.+.+
T Consensus 88 ~~~~~~~PCG~CRQ~l~Ef~ 107 (138)
T 3dmo_A 88 ETHGPIAPCGACRQVMIELG 107 (138)
T ss_dssp SCSSSCCCCHHHHHHHHHHH
T ss_pred CCCCccCCCHHHHHHHHHhC
Confidence 1579999999999984
No 29
>3oj6_A Blasticidin-S deaminase; ssgcid, seattle structural genomics for infectious disease, hydrolase; 1.70A {Coccidioides immitis}
Probab=98.82 E-value=6.7e-08 Score=74.83 Aligned_cols=94 Identities=14% Similarity=0.126 Sum_probs=68.7
Q ss_pred CCCChHHHHHHHHHHHHHhhcccCCCC-CcEEEEEee-CCEEEEEEecCcccCCCCcccHHHHHHHHHHHHcCCccCCCc
Q 029890 25 EAVKDRDHKFLTRAVEEAYKGVECGDG-GPFGAVVVR-NDEVVVSCHNMVLKSTDPTAHAEVTAIREACKKLNQIELSDC 102 (186)
Q Consensus 25 ~~~~~~d~~~m~~A~~~A~~~~~~~~~-~pVGavIv~-~g~ii~~g~N~~~~~~~~~~HAE~~Ai~~a~~~~~~~~l~~~ 102 (186)
+.+++.|.++++.|.+..++ .+.+. ++|||++.. +|+| .+|.|..+ ...+.|||..||.+|... +...+...
T Consensus 25 ~~L~~ed~~Li~~A~~a~~~--~PyS~~f~VGAAll~~dG~i-~tG~NVEn--~~~~lCAEr~Ai~~Avs~-G~~~~~ai 98 (158)
T 3oj6_A 25 EPLSAAGQNLIDTATSVING--IPVSDFYSVASAAISDDGRV-FSGVNVYH--FNGGPCAELVVLGVAAAA-GATKLTHI 98 (158)
T ss_dssp CBCCHHHHHHHHHHHHHHHT--SCCCSSSCEEEEEEETTSCE-EEEECCCC--TTTCCCHHHHHHHHHHHT-TCCCEEEE
T ss_pred ccCCHHHHHHHHHHHHHHHh--CCCCCCCcEEEEEEeCCCCE-EEEEcccc--CCccccHHHHHHHHHHHh-CCCceEEE
Confidence 35778889999999988765 34454 799999998 6665 59999864 567899999999998875 22233222
Q ss_pred eEEee-----CCCcHHHHHHHHHhCCC
Q 029890 103 EIYAS-----CEPCPMCFGAIHLSRIK 124 (186)
Q Consensus 103 tly~T-----~ePC~mCa~ai~~~gI~ 124 (186)
.+... ..||..|.+.|.+.+-.
T Consensus 99 ~vv~~~~~~~~~PCG~CRQvL~Ef~~~ 125 (158)
T 3oj6_A 99 VAIANEGRGILSPCGRCRQVLADLHPG 125 (158)
T ss_dssp EEEETTTTEEECCCHHHHHHHHHHSTT
T ss_pred EEEeCCCCCcCCCCHHHHHHHHHhCCC
Confidence 22222 36999999999998643
No 30
>4eg2_A Cytidine deaminase; UMP synthesis, Zn binding, hydrolase; HET: URI; 2.20A {Vibrio cholerae}
Probab=98.36 E-value=1.6e-06 Score=73.29 Aligned_cols=90 Identities=20% Similarity=0.107 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHhhcccCCCCCcEEEEEeeCCEEEEEEecCccc--CCCCcccHHHHHHHHHHHHcCCccCCCceEEeeC
Q 029890 31 DHKFLTRAVEEAYKGVECGDGGPFGAVVVRNDEVVVSCHNMVLK--STDPTAHAEVTAIREACKKLNQIELSDCEIYASC 108 (186)
Q Consensus 31 d~~~m~~A~~~A~~~~~~~~~~pVGavIv~~g~ii~~g~N~~~~--~~~~~~HAE~~Ai~~a~~~~~~~~l~~~tly~T~ 108 (186)
++.....+-..+.+++.+.+.++|||++...+.-|.+|.|..+. ....+.|||..||-++... +...+ ..+.+..
T Consensus 53 ~el~~~l~~~A~~~AyaPyS~F~VGAAll~~dG~i~~G~NvEna~as~~~t~CAEr~Ai~~Av~~-G~~~i--~~iav~~ 129 (298)
T 4eg2_A 53 ADLRVALLPIAAAYSYAPISEFYVGAIVRGISGRLYLGANMEFTGAQLGQTVHAEQCAISHAWMK-GEKGV--ADITINF 129 (298)
T ss_dssp HHHHHHHHHHHHTTCBCTTTCCCCEEEEEETTSCEEEEECBCCTTSCGGGCBCHHHHHHHHHHHT-TCSCE--EEEEESS
T ss_pred HHHHHHHHHHHHhhCcCCcCCCcEEEEEEECCCcEEEEEcccccccccCccccHHHHHHHHHHhC-CCCce--EEEEeec
Confidence 33345555566677888888899999999844446899998753 3346899999999998775 32222 2456678
Q ss_pred CCcHHHHHHHHHhCC
Q 029890 109 EPCPMCFGAIHLSRI 123 (186)
Q Consensus 109 ePC~mCa~ai~~~gI 123 (186)
.||.+|.+.|.+.+-
T Consensus 130 ~PCG~CRQ~l~Ef~~ 144 (298)
T 4eg2_A 130 SPCGHCRQFMNELTT 144 (298)
T ss_dssp CCCHHHHHHHTTBTT
T ss_pred CCCHHHHHHHHHhcC
Confidence 999999999999874
No 31
>4eg2_A Cytidine deaminase; UMP synthesis, Zn binding, hydrolase; HET: URI; 2.20A {Vibrio cholerae}
Probab=98.27 E-value=6e-06 Score=69.82 Aligned_cols=90 Identities=6% Similarity=0.002 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHhhcccCCCCCcEEEEEeeCCEEEEEEecCcccCCCCcccHHHHHHHHHHHHcCCc--cCCCceEEe---
Q 029890 32 HKFLTRAVEEAYKGVECGDGGPFGAVVVRNDEVVVSCHNMVLKSTDPTAHAEVTAIREACKKLNQI--ELSDCEIYA--- 106 (186)
Q Consensus 32 ~~~m~~A~~~A~~~~~~~~~~pVGavIv~~g~ii~~g~N~~~~~~~~~~HAE~~Ai~~a~~~~~~~--~l~~~tly~--- 106 (186)
+.+++.|++.+++++.+.+.++|||+|...+.-|.+|.|-.+....++.+||..||.++... +.. .++...++.
T Consensus 193 ~~L~~~A~~a~~~ayaPYS~~~vGAAl~t~dG~iytG~nvEnAay~~slcAEr~Al~~av~~-G~~~~~i~aiv~v~~~~ 271 (298)
T 4eg2_A 193 EELIQQALRAMNISHSPYTQNFSGVALKMRSGAIYLGAYAENAAFNPSLPPLQVALAQAMMM-GESFEDIEAAALVESAT 271 (298)
T ss_dssp CHHHHHHHHHHTTCBCTTTCCCEEEEEEETTSCEEEEECBCCTTSTTCBCHHHHHHHHHHHT-TCCGGGEEEEEEEECTT
T ss_pred HHHHHHHHHHHHhccCCccCCCeEEEEEeCCCCEEEEEeeeccccCCCCCHHHHHHHHHHHC-CCCccCeEEEEEEeCCC
Confidence 45899999999999999888899999998544468999999999999999999999998764 211 344344443
Q ss_pred -eCCCcHHHHHHHHHhC
Q 029890 107 -SCEPCPMCFGAIHLSR 122 (186)
Q Consensus 107 -T~ePC~mCa~ai~~~g 122 (186)
...||.+|.+.|...+
T Consensus 272 ~~~sPCG~CRqvL~e~~ 288 (298)
T 4eg2_A 272 GKISHLADTQATLEVIN 288 (298)
T ss_dssp CSSCCHHHHHHHHHHHC
T ss_pred CCcCCcHHHHHHHHHhC
Confidence 2469999999999886
No 32
>3v4k_A DNA DC->DU-editing enzyme apobec-3G; antiviral defense, HOST-virus interaction, hydrola metal-binding, nucleus; HET: DNA; 1.38A {Homo sapiens} PDB: 3v4j_A* 3ir2_A* 2kem_A* 2jyw_A* 2kbo_A* 3e1u_A* 3iqs_A*
Probab=97.46 E-value=0.00012 Score=58.56 Aligned_cols=74 Identities=18% Similarity=0.139 Sum_probs=51.2
Q ss_pred cccHHHHHHHHHHH-HcCCccCCCceEEeeCCCcHHHHHHHHHhC-----C------CEEEEEeecchhhhcCchhhHHh
Q 029890 79 TAHAEVTAIREACK-KLNQIELSDCEIYASCEPCPMCFGAIHLSR-----I------KRLVYGAKAEAAIAIGFDDFIAD 146 (186)
Q Consensus 79 ~~HAE~~Ai~~a~~-~~~~~~l~~~tly~T~ePC~mCa~ai~~~g-----I------~rVvy~~~~~~~~~~g~~~~~~~ 146 (186)
..|||+.-|.+... .+.+...-..|-|+|..||+.||..|...- | .|+||. ++.
T Consensus 78 ~~HAEl~FL~~~~~~~Ld~~~~Y~vTwy~SWSPC~~CA~~v~~FL~~~~~v~L~If~aRLY~~--~~~------------ 143 (203)
T 3v4k_A 78 GRHAELCFLDVIPFWKLDLDQDYRVTCFTSWSPCFSCAQEMAKFISKNKHVSLCIKTARIYDD--QGR------------ 143 (203)
T ss_pred CCcHHHHHHHHhhhccCCCCCeEEEEEEEeCCChHHHHHHHHHHHhhCCCeEEEEEEEeeccc--Cch------------
Confidence 57999999998764 232222234688999999999999998764 3 344443 221
Q ss_pred hhhccccccccceEEEeccc
Q 029890 147 ALRGTGFYQKAQLEIKKADG 166 (186)
Q Consensus 147 ~~~~~~~l~~~~v~v~~~~~ 166 (186)
.-.|...|.++|+.|..+..
T Consensus 144 ~~~gLr~L~~aG~~v~iM~~ 163 (203)
T 3v4k_A 144 CQEGLRTLAEAGAKISIMTY 163 (203)
T ss_pred HHHHHHHHHHCCCeEEecCH
Confidence 12355668889999998873
No 33
>3vow_A Probable DNA DC->DU-editing enzyme apobec-3C; antiviral deffense, HOST-virus interaction, metal- HIV-1 VIF, BET, single domain, sivagm, hydrolase; 2.15A {Homo sapiens} PDB: 3vm8_A
Probab=97.24 E-value=0.00054 Score=54.25 Aligned_cols=108 Identities=18% Similarity=0.210 Sum_probs=65.9
Q ss_pred cEEEEEee---CCEEE--EEEecCcccCCCCcccHHHHHHHHHHH-HcCCccCCCceEEeeCCCcHHHHHHHHHh-----
Q 029890 53 PFGAVVVR---NDEVV--VSCHNMVLKSTDPTAHAEVTAIREACK-KLNQIELSDCEIYASCEPCPMCFGAIHLS----- 121 (186)
Q Consensus 53 pVGavIv~---~g~ii--~~g~N~~~~~~~~~~HAE~~Ai~~a~~-~~~~~~l~~~tly~T~ePC~mCa~ai~~~----- 121 (186)
..=|-.|. ++.-+ ..|..+--....+..|||+.=|.+... .+.+...-.-|-|+|..||+.||..|...
T Consensus 33 T~LCYeVk~~~~~s~~~~~~g~~~nq~~~~~~~HAE~~Fl~~~~~~~L~~~~~y~VTwy~SwSPC~~CA~~va~FL~~~~ 112 (190)
T 3vow_A 33 TWLCFTVEGIKRRSVVSWKTGVFRNQVDSETHCHAERCFLSWFCDDILSPNTKYQVTWYTSWSPCPDCAGEVAEFLARHS 112 (190)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEEETTSCGGGSHHHHHHHHHSSTTSCTTSEEEEEEEEEECCCHHHHHHHHHHHHHCT
T ss_pred eEEEEEEEccCCCCCCccccCeecCcCCCcccccHHHHHHHHHhhcCCCCCceEEEEEEEeCCchHHHHHHHHHHHHhCC
Confidence 36777775 33333 234322111234568999999988643 22222112367899999999999988765
Q ss_pred CCCEEEEEeecchhhhcCchhhHHhhhhccccccccceEEEeccch
Q 029890 122 RIKRLVYGAKAEAAIAIGFDDFIADALRGTGFYQKAQLEIKKADGT 167 (186)
Q Consensus 122 gI~rVvy~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~v~v~~~~~~ 167 (186)
+|+-.||.+.=-. + +..+.-.|...|.++|+.|.++.-+
T Consensus 113 ~v~L~If~aRLY~-----~--~~~~~q~gLr~L~~~G~~v~iM~~~ 151 (190)
T 3vow_A 113 NVNLTIFTARLYY-----F--QYPCYQEGLRSLSQEGVAVEIMDYE 151 (190)
T ss_dssp TEEEEEEEEECTT-----T--TSHHHHHHHHHHHHHTCEEEECCHH
T ss_pred CeEEEEEEEeccc-----c--cCchHHHHHHHHHHCCCcEEEeChH
Confidence 5665666653211 0 1122335667799999999998733
No 34
>4ehi_A Bifunctional purine biosynthesis protein PURH; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE BTB; 2.28A {Campylobacter jejuni subsp}
Probab=80.85 E-value=20 Score=32.22 Aligned_cols=66 Identities=21% Similarity=0.251 Sum_probs=53.2
Q ss_pred EEEeeCCEEEEEEecCcccCCCCcccHHHHHHHHHHHHcCCccCCCceEEe-eCCCcHHHHHHHHHhCCCEEEE
Q 029890 56 AVVVRNDEVVVSCHNMVLKSTDPTAHAEVTAIREACKKLNQIELSDCEIYA-SCEPCPMCFGAIHLSRIKRLVY 128 (186)
Q Consensus 56 avIv~~g~ii~~g~N~~~~~~~~~~HAE~~Ai~~a~~~~~~~~l~~~tly~-T~ePC~mCa~ai~~~gI~rVvy 128 (186)
-|++++|+.|+.|.-++ ...|+-..|+.+|... +..++|+.|-. -..|-+-|......+||+-|+=
T Consensus 437 Iv~akdg~tvGiGaGQ~-----sRV~s~r~A~~kA~~~--g~~~~G~vlASDAFFPF~D~ve~Aa~aGV~aIiQ 503 (534)
T 4ehi_A 437 VVYVKNGAMVAIGMGMT-----SRIDAAKAAIAKAKEM--GLDLQGCVLASEAFFPFRDSIDEASKVGVKAIVE 503 (534)
T ss_dssp EEEEETTEEEEEECSSS-----CHHHHHHHHHHHHHHT--TCCCTTCEEECSSCCCSTHHHHHHHHTTCCEEEE
T ss_pred EEEEeCCeEEEECCCCc-----chHHHHHHHHHHHHhh--ccCCCCeEEEeccccCCCccHHHHHHcCCEEEEC
Confidence 56778999999998654 3568889999998764 34578888765 3469999999999999999984
No 35
>3zzm_A Bifunctional purine biosynthesis protein PURH; transferase, hydrolase; HET: JLN; 2.20A {Mycobacterium tuberculosis} PDB: 4a1o_A*
Probab=71.28 E-value=34 Score=30.75 Aligned_cols=64 Identities=13% Similarity=0.127 Sum_probs=51.3
Q ss_pred EEEEeeCCEEEEEEecCcccCCCCcccHHHHHHHHHHHHcCCccCCCceEEe-eCCCcHHHHHHHHHhCCCEEEE
Q 029890 55 GAVVVRNDEVVVSCHNMVLKSTDPTAHAEVTAIREACKKLNQIELSDCEIYA-SCEPCPMCFGAIHLSRIKRLVY 128 (186)
Q Consensus 55 GavIv~~g~ii~~g~N~~~~~~~~~~HAE~~Ai~~a~~~~~~~~l~~~tly~-T~ePC~mCa~ai~~~gI~rVvy 128 (186)
+-|++++|+.|+.|.-++ ...|+-..|+.+|.. .++|+.|-. -..|-+-|......+||+-|+=
T Consensus 428 AIv~akdg~tvGiGaGQ~-----sRV~s~r~A~~kAg~-----~~~G~vlaSDAFFPF~D~ve~aa~aGv~aIiQ 492 (523)
T 3zzm_A 428 AIVIAADGATVGVGMGQV-----NRVDAARLAVERGGE-----RVRGAVAASDAFFPFPDGLETLAAAGVTAVVH 492 (523)
T ss_dssp CEEEEETTEEEEEECSCS-----SHHHHHHHHHHHHGG-----GCTTCEEEESSCCSSHHHHHHHHHTTCCEEEE
T ss_pred eEEEEECCeEEEECCCCc-----chHHHHHHHHHHhcc-----ccCCeEEEeccCcCCCccHHHHHHcCCEEEEC
Confidence 356778999999998644 355888889988843 467888765 4679999999999999999984
No 36
>1zcz_A Bifunctional purine biosynthesis protein PURH; TM1249; HET: PG4; 1.88A {Thermotoga maritima} SCOP: c.24.1.3 c.97.1.4
Probab=63.28 E-value=77 Score=27.96 Aligned_cols=63 Identities=14% Similarity=0.094 Sum_probs=49.9
Q ss_pred EEEeeCCEEEEEEecCcccCCCCcccHHHHHHHHHHHHcCCccCCCceEEe-eCCCcHHHHHHHHHhCCCEEEE
Q 029890 56 AVVVRNDEVVVSCHNMVLKSTDPTAHAEVTAIREACKKLNQIELSDCEIYA-SCEPCPMCFGAIHLSRIKRLVY 128 (186)
Q Consensus 56 avIv~~g~ii~~g~N~~~~~~~~~~HAE~~Ai~~a~~~~~~~~l~~~tly~-T~ePC~mCa~ai~~~gI~rVvy 128 (186)
-|++++|+.|+.|.-++ ...|+-..|+.+|..+ .+|+.|-. -..|-+-|......+||+-|+=
T Consensus 370 Iv~akdg~tvGiGaGQ~-----sRV~s~riA~~kA~~~-----~~G~vlASDAFFPF~D~v~~aa~aGv~aIiQ 433 (464)
T 1zcz_A 370 VLIAKDGVTVGIGSGQP-----SRKRAAWIATVMAGEK-----AKGAVAASDAFFPFPDSLEILAQAGVKAVVA 433 (464)
T ss_dssp EEEEETTEEEEEECSCS-----SHHHHHHHHHHHHGGG-----GTTCEEEESSCCSSHHHHHHHHHTTCCEEEE
T ss_pred EEEEeCCeEEEECCCCC-----chHHHHHHHHHHhhcc-----cCCeEEEecccCCchhhHHHHHHhCCeEEEc
Confidence 56678999999998644 3558888899888654 26776655 4579999999999999999994
No 37
>1zy7_A RNA-specific adenosine deaminase B1, isoform drada2A; alpha/beta deaminase motif, zinc coordination, ionsitol hexakisphosphate, hydrolase; HET: IHP; 1.70A {Homo sapiens}
Probab=46.37 E-value=1.4e+02 Score=25.63 Aligned_cols=15 Identities=27% Similarity=0.414 Sum_probs=12.4
Q ss_pred ceEEeeCCCcHHHHH
Q 029890 102 CEIYASCEPCPMCFG 116 (186)
Q Consensus 102 ~tly~T~ePC~mCa~ 116 (186)
..||+|.-||.-+.+
T Consensus 144 lhlY~S~~PCGdAsi 158 (403)
T 1zy7_A 144 FHLYISTSPCGDARI 158 (403)
T ss_dssp EEEEESSCCTTHHHH
T ss_pred EEEEeccCCCCCccc
Confidence 568999999977764
No 38
>4htu_A Ribonuclease H, RNAse H; 5-chloro-2'-deoxyuridine, W-C base PAIR, wobble base PAIR, D helix; HET: DNA UCL; 1.49A {Bacillus halodurans} PDB: 3d0p_A* 4hue_A* 4huf_A* 4hug_A* 1zbf_A 1zbi_A 2g8u_A 3uld_A* 3ey1_A* 3twh_A* 2g8f_A 2g8v_A 2g8w_A 2g8i_A 2g8h_A 2g8k_A 3i8d_A* 2r7y_A* 1zbl_A
Probab=42.72 E-value=13 Score=27.37 Aligned_cols=43 Identities=21% Similarity=0.209 Sum_probs=23.8
Q ss_pred CCCCCc--EEEEEeeCCEEEEE-EecCcccCCCCcccHHHHHHHHHHHHc
Q 029890 48 CGDGGP--FGAVVVRNDEVVVS-CHNMVLKSTDPTAHAEVTAIREACKKL 94 (186)
Q Consensus 48 ~~~~~p--VGavIv~~g~ii~~-g~N~~~~~~~~~~HAE~~Ai~~a~~~~ 94 (186)
.++|.| .|+||.++|..+.. |.-. ..--.-||..|+..|.+.+
T Consensus 15 ~GNPGp~G~ggV~~~~g~~~~~~g~~~----~tTNN~aEl~A~i~aL~~l 60 (134)
T 4htu_A 15 QGNPGIVEYKGVDTKTGEVLFEREPIP----IGTNNMGEFLAIVHGLRYL 60 (134)
T ss_dssp ETTTEEEEEEEEETTTCCEEEEEEEEE----EECHHHHHHHHHHHHHHHH
T ss_pred CCCCCCeEEEEEEEECCEEEEEecCCC----CCchHHHHHHHHHHHHHHH
Confidence 355555 55666666654433 3210 0112368999988877653
No 39
>2ehg_A Ribonuclease HI; RNAse HI, hyperthermophilic archaeon, D stranded RNA-dependent RNAse, hydrolase; 1.60A {Sulfolobus tokodaii} PDB: 3aly_A
Probab=40.06 E-value=42 Score=23.87 Aligned_cols=55 Identities=11% Similarity=0.047 Sum_probs=29.3
Q ss_pred EEEEeeCCEEEEE-EecCccc-CCCCcccHHHHHHHHHHHHcCCccCCCceEEeeCC
Q 029890 55 GAVVVRNDEVVVS-CHNMVLK-STDPTAHAEVTAIREACKKLNQIELSDCEIYASCE 109 (186)
Q Consensus 55 GavIv~~g~ii~~-g~N~~~~-~~~~~~HAE~~Ai~~a~~~~~~~~l~~~tly~T~e 109 (186)
|+||.++|..+.. +....+. .......||..|+..+.+..........++|+-.+
T Consensus 22 G~vi~~~g~~~~~~~~~~~~~~~~~tnn~aEl~A~~~aL~~a~~~g~~~v~i~tDS~ 78 (149)
T 2ehg_A 22 GFVIYLDNRKIEGYGLAEKPFSINSTNNVAEYSGLICLMETMLRLGISSPIIKGDSQ 78 (149)
T ss_dssp EEEEECSSCEEEEEEECSCTTCTTCCHHHHHHHHHHHHHHHHHHHTCCSCEEEESCH
T ss_pred EEEEEECCEEEEEeccccCCCCCCccHHHHHHHHHHHHHHHHHHcCCCEEEEEeChH
Confidence 6677777776632 2211100 11223579999998887653222234555665443
No 40
>2gv5_C SFI1P; centrin, CDC31P, spindle POLE BODY, centrosome, cell; 3.00A {Saccharomyces cerevisiae}
Probab=33.63 E-value=12 Score=24.69 Aligned_cols=20 Identities=20% Similarity=0.493 Sum_probs=17.1
Q ss_pred hHHHHHHHHHHHhhcccccC
Q 029890 167 TGAAIAEQVFEKTKAKFQLY 186 (186)
Q Consensus 167 ~~~~l~~~~~~~~~~~f~~~ 186 (186)
....+...||..|+.+++||
T Consensus 18 ~~~~l~~~fls~W~~R~~Fy 37 (73)
T 2gv5_C 18 KERELQSQLFNAWRNRFCFY 37 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHH
Confidence 35678999999999999886
No 41
>3vdp_A Recombination protein RECR; zinc finger, DNA repair, DNA binding; 2.45A {Thermoanaerobacter tengcongensis} PDB: 3vdu_A 3ve5_D
Probab=30.70 E-value=36 Score=26.94 Aligned_cols=30 Identities=30% Similarity=0.290 Sum_probs=22.2
Q ss_pred HHHHHHHHHcCCccCCCceEEeeCCCcHHHHH
Q 029890 85 TAIREACKKLNQIELSDCEIYASCEPCPMCFG 116 (186)
Q Consensus 85 ~Ai~~a~~~~~~~~l~~~tly~T~ePC~mCa~ 116 (186)
.||..+.++ -..|.-|--++..+||.-|+.
T Consensus 59 ~al~~~~~~--i~~C~~C~nlte~~~C~IC~d 88 (212)
T 3vdp_A 59 QAIIEAKEK--LRYCKICFNITDKEVCDICSD 88 (212)
T ss_dssp HHHHHHHHH--CEECTTTCCEESSSSCHHHHC
T ss_pred HHHHHHHHh--CCcCCCCCCCCCCCcCCCCCC
Confidence 445555554 356788989999999999974
No 42
>1zbf_A Ribonuclease H-related protein; RNAse H, RNA/DNA hybrid, DDE motif, hydrolase; 1.50A {Bacillus halodurans} SCOP: c.55.3.1 PDB: 1zbi_A 2g8u_A 2g8i_A 2g8h_A 2g8k_A 2g8f_A 2g8v_A 2g8w_A 3ey1_A* 1zbl_A 3d0p_A* 3i8d_A* 2r7y_A*
Probab=30.32 E-value=25 Score=25.76 Aligned_cols=44 Identities=20% Similarity=0.280 Sum_probs=24.5
Q ss_pred CCCCCc--EEEEEeeCCEEEEEEecCcccCCCCcccHHHHHHHHHHHHc
Q 029890 48 CGDGGP--FGAVVVRNDEVVVSCHNMVLKSTDPTAHAEVTAIREACKKL 94 (186)
Q Consensus 48 ~~~~~p--VGavIv~~g~ii~~g~N~~~~~~~~~~HAE~~Ai~~a~~~~ 94 (186)
.+++.| +|+||..+|..+..... . .......||..|+..|.+.+
T Consensus 21 ~gNpG~~G~G~vl~~~g~~~~~~~~-~--~~~TNN~aEl~A~i~aL~~~ 66 (142)
T 1zbf_A 21 QGNPGIVEYKGVDTKTGEVLFEREP-I--PIGTNNMGEFLAIVHGLRYL 66 (142)
T ss_dssp CSSSEEEEEEEEETTTCCEEEECCC-E--EEECHHHHHHHHHHHHHHHH
T ss_pred CCCCCCeEEEEEEEeCCEEEEEecc-c--CCcCcHHHHHHHHHHHHHHH
Confidence 344445 67777766765543211 1 01113479999998877653
No 43
>3p1g_A Xenotropic murine leukemia virus-related virus (X H domain; XMRV, RNAse H, reverse transcriptase, transcription; 1.50A {Xenotropic mulv-related virus} PDB: 3v1q_A 3v1o_A 3v1r_A* 2hb5_A 4e89_A
Probab=29.90 E-value=96 Score=22.95 Aligned_cols=54 Identities=22% Similarity=0.214 Sum_probs=32.6
Q ss_pred EEEEEeeCCEEEEEEecCcccCCCCcccHHHHHHHHHHHHcCCccCCCceEEeeCCCcHH
Q 029890 54 FGAVVVRNDEVVVSCHNMVLKSTDPTAHAEVTAIREACKKLNQIELSDCEIYASCEPCPM 113 (186)
Q Consensus 54 VGavIv~~g~ii~~g~N~~~~~~~~~~HAE~~Ai~~a~~~~~~~~l~~~tly~T~ePC~m 113 (186)
.|++|+.+|+++..+.. ........||..|+..|.+.. .....++|+--+-...
T Consensus 41 ~G~vi~~~~~~~~~~~~---~~~~Tnn~aEl~Ai~~AL~~~---~~~~v~I~tDS~~vi~ 94 (165)
T 3p1g_A 41 AGAAVTTETEVIWARAL---PAGTSAQRAELIALTQALKMA---EGKKLNVYTDSRYAFA 94 (165)
T ss_dssp EEEEEECSSCEEEEEEE---CTTCCHHHHHHHHHHHHHHHT---BTSEEEEEECCHHHHH
T ss_pred EEEEEEECCEEEEEecC---CCCCcHHHHHHHHHHHHHHHc---cCceEEEEEchHHHHh
Confidence 56677777776644322 111223589999999998875 2345566665543333
No 44
>2fb5_A Hypothetical membrane spanning protein; structural genomics, membrane protein, PSI, protein structur initiative; 1.99A {Bacillus cereus} SCOP: d.320.1.1
Probab=28.70 E-value=31 Score=27.17 Aligned_cols=34 Identities=24% Similarity=0.351 Sum_probs=22.5
Q ss_pred EEEEEeeCCEEEEEEecC------cccCCCCcccHHHHHH
Q 029890 54 FGAVVVRNDEVVVSCHNM------VLKSTDPTAHAEVTAI 87 (186)
Q Consensus 54 VGavIv~~g~ii~~g~N~------~~~~~~~~~HAE~~Ai 87 (186)
=||||+++|+|++.|.=- ..+..-+++|--...|
T Consensus 135 DGAvII~~~rI~aA~~~LPls~~~~i~~~lGTRHRAA~GI 174 (205)
T 2fb5_A 135 DGAVLVKNNHIVSAANILPLTKSTEVDPELGTRHRAAIGL 174 (205)
T ss_dssp SSEEEEETTEEEEEEEBCCCCCCTTSCTTCCHHHHHHHHH
T ss_pred CcEEEEECCEEEEEEEEecCCCCCCcCccccHHHHHHHHH
Confidence 599999999999998632 1223456778543333
No 45
>3u3g_D Ribonuclease H, RNAse H1; hydrolase, cleave the RNA strand of RNA/DNA hybrid; 1.40A {Uncultured organism}
Probab=28.20 E-value=54 Score=22.55 Aligned_cols=54 Identities=17% Similarity=0.210 Sum_probs=28.6
Q ss_pred EEEEEee-CCEEEEEEecCcccCCCCcccHHHHHHHHHHHHcCCccCC----CceEEeeCC
Q 029890 54 FGAVVVR-NDEVVVSCHNMVLKSTDPTAHAEVTAIREACKKLNQIELS----DCEIYASCE 109 (186)
Q Consensus 54 VGavIv~-~g~ii~~g~N~~~~~~~~~~HAE~~Ai~~a~~~~~~~~l~----~~tly~T~e 109 (186)
+|++|.+ +|+.+....-... ......||..|+..+.+........ ..++|+--+
T Consensus 21 ~G~v~~~~~g~~~~~~~~~~~--~~tn~~aEl~A~~~aL~~a~~~~~~~~~~~v~i~tDS~ 79 (140)
T 3u3g_D 21 IGVVITDEKGNTLHESSAYIG--ETTNNVAEYEALIRALEDLQMFGDKLVDMEVEVRMDSE 79 (140)
T ss_dssp EEEEEECTTSCEEEEEEEEEE--EECHHHHHHHHHHHHHHHHGGGGGGGTTCEEEEEESCH
T ss_pred EEEEEEeCCCCEEEEEEeeCC--CCchHHHHHHHHHHHHHHHHHcCCCCCCceEEEEeChH
Confidence 7777777 5665422111000 1123479999999988764333333 444555433
No 46
>1vdd_A Recombination protein RECR; helix-hairpin-helix, zinc finger, toprim, walker B ATP binding motif; 2.50A {Deinococcus radiodurans} SCOP: e.49.1.1 PDB: 2v1c_A
Probab=28.06 E-value=43 Score=26.79 Aligned_cols=30 Identities=23% Similarity=0.342 Sum_probs=21.7
Q ss_pred HHHHHHHHHcCCccCCCceEEeeCCCcHHHHH
Q 029890 85 TAIREACKKLNQIELSDCEIYASCEPCPMCFG 116 (186)
Q Consensus 85 ~Ai~~a~~~~~~~~l~~~tly~T~ePC~mCa~ 116 (186)
.||..+.++ -..|.-|--++..+||+-|+.
T Consensus 45 ~al~~~~~~--i~~C~~C~nlte~~~C~IC~d 74 (228)
T 1vdd_A 45 SALLEAKRD--LHVCPICFNITDAEKCDVCAD 74 (228)
T ss_dssp HHHHHHHHH--CEECSSSCCEESSSSCHHHHC
T ss_pred HHHHHHHhc--CeEcCCCCCCcCCCcCCCCCC
Confidence 344455554 356788888899999999974
No 47
>2kq2_A Ribonuclease H-related protein; PSI, NESG, protein structure, APO enzyme, structural genomics, protein structure initiative; NMR {Desulfitobacterium hafniense dcb-2} PDB: 2kw4_A
Probab=26.40 E-value=69 Score=23.00 Aligned_cols=55 Identities=18% Similarity=0.168 Sum_probs=28.2
Q ss_pred cEEEEEeeCCEEE--EE-EecCcccCCCCcccHHHHHHHHHHHHcCCccCCCceEEeeC
Q 029890 53 PFGAVVVRNDEVV--VS-CHNMVLKSTDPTAHAEVTAIREACKKLNQIELSDCEIYASC 108 (186)
Q Consensus 53 pVGavIv~~g~ii--~~-g~N~~~~~~~~~~HAE~~Ai~~a~~~~~~~~l~~~tly~T~ 108 (186)
-.|++|..+|++. +. +.............||..|+..|.+......+ ..++|+--
T Consensus 21 G~G~vi~~~g~~~~~~~~~~~~~~~~~~tNn~aEl~A~~~AL~~a~~~~~-~v~I~tDS 78 (147)
T 2kq2_A 21 AWAYAFVKDGKVHYEDADVGKNPAAATMRNVAGEIAAALYAVKKASQLGV-KIRILHDY 78 (147)
T ss_dssp EEEEEEEETTEEEEEEEEECCCGGGGGTCTTHHHHHHHHHHHHHHHHHTC-CCCBSSCC
T ss_pred EEEEEEEECCEEEEEEeccccccccccccHHHHHHHHHHHHHHHHHHCCC-eEEEEECc
Confidence 4788888887653 22 22111100112357999999888763211122 44555544
No 48
>1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1 c.47.1.10
Probab=26.18 E-value=2.1e+02 Score=21.56 Aligned_cols=68 Identities=18% Similarity=0.246 Sum_probs=34.9
Q ss_pred cEEEEEeeCCEEEEEEecCcccCCCC--cccHHHHHHHHHHHHcCCccCCCceEEeeCCCcHHHHHHHHHh---CCCEE
Q 029890 53 PFGAVVVRNDEVVVSCHNMVLKSTDP--TAHAEVTAIREACKKLNQIELSDCEIYASCEPCPMCFGAIHLS---RIKRL 126 (186)
Q Consensus 53 pVGavIv~~g~ii~~g~N~~~~~~~~--~~HAE~~Ai~~a~~~~~~~~l~~~tly~T~ePC~mCa~ai~~~---gI~rV 126 (186)
|.--+| .+|+|+....+.... ..+ ..|++.. ++ +.... ...-...++|++ .-|+.|.++..+. ||.-.
T Consensus 126 p~t~li-~~G~i~~~~~~~~~~-~~~~~~~~~~~i-l~-~l~~~-~i~~~~i~ly~~-~~Cp~C~~a~~~L~~~~i~~~ 198 (241)
T 1nm3_A 126 RYSMLV-KNGVVEKMFIEPNEP-GDPFKVSDADTM-LK-YLAPQ-HQVQESISIFTK-PGCPFCAKAKQLLHDKGLSFE 198 (241)
T ss_dssp CEEEEE-ETTEEEEEEECCSCS-SCCCSSSSHHHH-HH-HHCTT-SCCCCCEEEEEC-SSCHHHHHHHHHHHHHTCCCE
T ss_pred eEEEEE-ECCEEEEEEEeccCC-CccceecCHHHH-HH-Hhhhh-ccccceEEEEEC-CCChHHHHHHHHHHHcCCceE
Confidence 444455 899999886642211 111 1455432 22 22211 112234567765 5799999876544 66533
No 49
>2zuq_A Disulfide bond formation protein B; disulfide bond, membrane protein, E. coli, cell inner membrane, cell membrane, chaperone, electron transport, membrane; HET: UQ1; 3.30A {Escherichia coli} PDB: 3e9j_C* 2hi7_B* 2leg_B* 2zup_B* 2k73_A 2k74_A*
Probab=25.49 E-value=17 Score=27.56 Aligned_cols=10 Identities=20% Similarity=0.494 Sum_probs=8.0
Q ss_pred eCCCcHHHHH
Q 029890 107 SCEPCPMCFG 116 (186)
Q Consensus 107 T~ePC~mCa~ 116 (186)
-++||++|.-
T Consensus 37 gl~PC~LCi~ 46 (176)
T 2zuq_A 37 LLKPSVLCIY 46 (176)
T ss_dssp CCCCCTTHHH
T ss_pred CCCCcHhHHH
Confidence 5899999964
No 50
>3qio_A GAG-POL polyprotein; RNAse H, inhibitor, nuclease, transferase, hydrolase- complex; HET: QID; 1.40A {Hiv-1 M} SCOP: c.55.3.1 PDB: 3qin_A* 3hyf_A* 1o1w_A 3lp3_A* 1hrh_A 3k2p_A* 1rdh_A
Probab=25.37 E-value=1.4e+02 Score=21.59 Aligned_cols=33 Identities=15% Similarity=0.074 Sum_probs=20.9
Q ss_pred ccHHHHHHHHHHHHcCCccCCCceEEeeCCCcHHHHH
Q 029890 80 AHAEVTAIREACKKLNQIELSDCEIYASCEPCPMCFG 116 (186)
Q Consensus 80 ~HAE~~Ai~~a~~~~~~~~l~~~tly~T~ePC~mCa~ 116 (186)
..||..|+..|.+..+ ...++|+--+-...|..
T Consensus 50 n~aEl~A~i~AL~~~~----~~v~i~tDS~~v~~~i~ 82 (150)
T 3qio_A 50 QKTELQAIYLALQDSG----LEVNIVTDSQYALGIIT 82 (150)
T ss_dssp HHHHHHHHHHHHHHSC----SEEEEEESCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC----CcEEEEeCcHHHHHHHH
Confidence 4799999999988631 34556665443344433
Done!