BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029891
(186 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2Z51|A Chain A, Crystal Structure Of Arabidopsis Cnfu Involved In Iron-
Sulfur Cluster Biosynthesis
Length = 154
Score = 195 bits (495), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 94/107 (87%), Positives = 101/107 (94%)
Query: 80 LPLTAENIESVLDEIRPYLISDGGNVALHEIDGNVVRLKLQGACGSCPSSVMTMKMGIER 139
+PLT EN+ESVLDEIRPYL+SDGGNVALHEIDGNVVR+KLQGACGSCPSS MTMKMGIER
Sbjct: 2 VPLTEENVESVLDEIRPYLMSDGGNVALHEIDGNVVRVKLQGACGSCPSSTMTMKMGIER 61
Query: 140 RLMEKIPEIVAVESVADEETGLELNEENIEKVLEEIRPYLVGAAANS 186
RLMEKIPEIVAVE++ DEETGLELNEENIEKVLEEIRPYL+G A S
Sbjct: 62 RLMEKIPEIVAVEALPDEETGLELNEENIEKVLEEIRPYLIGTADGS 108
Score = 62.4 bits (150), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/114 (35%), Positives = 62/114 (54%), Gaps = 11/114 (9%)
Query: 48 CHSSCRLLLIRKRGAARR------NVIKAVATPDSAIELPLTAENIESVLDEIRPYLISD 101
C S + K G RR ++ A PD L L ENIE VL+EIRPYLI
Sbjct: 45 CGSCPSSTMTMKMGIERRLMEKIPEIVAVEALPDEETGLELNEENIEKVLEEIRPYLIGT 104
Query: 102 G-GNVALHEIDGNVVRLKLQGACGSCPSSVMTMKMGIERRLMEKIPEIVAVESV 154
G++ L EI+ +V++++ G + VMT+++ + ++L EKIP I AV+ +
Sbjct: 105 ADGSLDLVEIEDPIVKIRITGPA----AGVMTVRVAVTQKLREKIPSIAAVQLI 154
>pdb|2JNV|A Chain A, Solution Structure Of C-Terminal Domain Of Nifu-Like
Protein From Oryza Sativa
Length = 91
Score = 139 bits (350), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 65/83 (78%), Positives = 76/83 (91%)
Query: 80 LPLTAENIESVLDEIRPYLISDGGNVALHEIDGNVVRLKLQGACGSCPSSVMTMKMGIER 139
LPLTA N+ESVLD++RPYL +DGG+VALHEI GNVVRLKLQGACGSCPSS++T+K GIER
Sbjct: 3 LPLTAGNVESVLDQVRPYLTADGGDVALHEIAGNVVRLKLQGACGSCPSSLITIKRGIER 62
Query: 140 RLMEKIPEIVAVESVADEETGLE 162
RLMEKIP++ AVE V D+ETGLE
Sbjct: 63 RLMEKIPDVAAVEPVTDKETGLE 85
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 160 GLELNEENIEKVLEEIRPYLVGAAAN 185
GL L N+E VL+++RPYL +
Sbjct: 2 GLPLTAGNVESVLDQVRPYLTADGGD 27
>pdb|1XHJ|A Chain A, Solution Structure Of The Staphylococcus Epidermidis
Protein Se0630. Northest Structural Genomics Consortium
Target Ser8
Length = 88
Score = 79.7 bits (195), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 54/76 (71%)
Query: 79 ELPLTAENIESVLDEIRPYLISDGGNVALHEIDGNVVRLKLQGACGSCPSSVMTMKMGIE 138
E P + + V++ +RP+L+ DGG+ L +++ +V+L+L GACG+CPSS +T+K GIE
Sbjct: 4 ENPTMFDQVAEVIERLRPFLLRDGGDCTLVDVEDGIVKLQLHGACGTCPSSTITLKAGIE 63
Query: 139 RRLMEKIPEIVAVESV 154
R L E++P ++ VE V
Sbjct: 64 RALHEEVPGVIEVEQV 79
>pdb|1VEH|A Chain A, Solution Structure Of Rsgi Ruh-018, A Nifu-Like Domain Of
Hirip5 Protein From Mouse Cdna
Length = 92
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/75 (46%), Positives = 49/75 (65%), Gaps = 1/75 (1%)
Query: 87 IESVLD-EIRPYLISDGGNVALHEIDGNVVRLKLQGACGSCPSSVMTMKMGIERRLMEKI 145
I+ +LD IRP + DGG+V + +VRLKLQG+C SCPSS++T+K GI+ L I
Sbjct: 18 IKELLDTRIRPTVQEDGGDVIYRGFEDGIVRLKLQGSCTSCPSSIITLKSGIQNMLQFYI 77
Query: 146 PEIVAVESVADEETG 160
PE+ VE V+ +G
Sbjct: 78 PEVEGVEQVSGPSSG 92
>pdb|1TH5|A Chain A, Solution Structure Of C-Terminal Domain Of Nifu-Like
Protein From Oryza Sativa
Length = 74
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 48/75 (64%), Gaps = 7/75 (9%)
Query: 80 LPLTAENIESVLDEIRPYLI-SDGGNVALHEIDGNVVRLKLQGACGSCPSSVM-TMKMGI 137
L L EN+E VL+EIRPYL + GG + I G +V+++L G P++V+ T+++ +
Sbjct: 2 LELNEENVEKVLNEIRPYLAGTGGGGLQFLMIKGPIVKVRLTG-----PAAVVRTVRIAV 56
Query: 138 ERRLMEKIPEIVAVE 152
++L EKIP I V+
Sbjct: 57 SKKLREKIPSIQIVQ 71
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/26 (69%), Positives = 19/26 (73%)
Query: 161 LELNEENIEKVLEEIRPYLVGAAANS 186
LELNEEN+EKVL EIRPYL G
Sbjct: 2 LELNEENVEKVLNEIRPYLAGTGGGG 27
>pdb|1CJC|A Chain A, Structure Of Adrenodoxin Reductase Of Mitochondrial P450
Systems
pdb|1E1L|A Chain A, Structure Of Adrenodoxin Reductase In Complex With Nadp
Obtained By Cocrystallisation
pdb|1E1K|A Chain A, Adrenodoxin Reductase In Complex With Nadp+ Obtained By A
Soaking Experiment
pdb|1E1M|A Chain A, Adrenodoxin Reductase In Complex With Nadph Obtained By A
Soaking Experiment
pdb|1E1N|A Chain A, Structure Of Adrenodoxin Reductase At 2.4 Angstrom In
Crystal Form A''
pdb|1E6E|A Chain A, Adrenodoxin ReductaseADRENODOXIN COMPLEX OF MITOCHONDRIAL
P450 Systems
pdb|1E6E|C Chain C, Adrenodoxin ReductaseADRENODOXIN COMPLEX OF MITOCHONDRIAL
P450 Systems
Length = 460
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 27/66 (40%)
Query: 14 HQTLDSPSCSRPASKSTKSFFGERVSLTRWRNPVCHSSCRLLLIRKRGAARRNVIKAVAT 73
HQ LD P P S ++F G L R SC +I +G +V + + T
Sbjct: 107 HQALDIPGEELPGVFSARAFVGWYNGLPENRELAPDLSCDTAVILGQGNVALDVARILLT 166
Query: 74 PDSAIE 79
P +E
Sbjct: 167 PPDHLE 172
>pdb|2VSH|A Chain A, Synthesis Of Cdp-Activated Ribitol For Teichoic Acid
Precursors In Streptococcus Pneumoniae
pdb|2VSH|B Chain B, Synthesis Of Cdp-Activated Ribitol For Teichoic Acid
Precursors In Streptococcus Pneumoniae
pdb|2VSI|A Chain A, Synthesis Of Cdp-Activated Ribitol For Teichoic Acid
Precursors In Streptococcus Pneumoniae
pdb|2VSI|B Chain B, Synthesis Of Cdp-Activated Ribitol For Teichoic Acid
Precursors In Streptococcus Pneumoniae
Length = 236
Score = 28.5 bits (62), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 38/92 (41%), Gaps = 8/92 (8%)
Query: 55 LLIRKRGAARRNVIKAVATPDSAIELPLTAENIESVLDEIRPYLISDGGNVALHEIDGNV 114
++I K GA R IK + A PLT E+I D +RP+ + L I N+
Sbjct: 77 IIITKGGADRNTSIKNIIEAIDAYR-PLTPEDIVVTHDSVRPF-------ITLRMIQDNI 128
Query: 115 VRLKLQGACGSCPSSVMTMKMGIERRLMEKIP 146
+ A + +V T+ + + IP
Sbjct: 129 QLAQNHDAVDTVVEAVDTIVESTNGQFITDIP 160
>pdb|1BIF|A Chain A, 6-Phosphofructo-2-KinaseFRUCTOSE-2,6-Bisphosphatase
Bifunctional Enzyme Complexed With Atp-G-S And Phosphate
Length = 469
Score = 27.3 bits (59), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 30/54 (55%), Gaps = 5/54 (9%)
Query: 61 GAARRNVIKAVAT-----PDSAIELPLTAENIESVLDEIRPYLISDGGNVALHE 109
G RR+++K + PD+ L + + + L+++R +L +GG+VA+ +
Sbjct: 76 GQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVRKFLSEEGGHVAVFD 129
>pdb|3BIF|A Chain A, 6-Phosphofructo-2-KinaseFRUCTOSE-2,6-Bisphosphatase Empty
6-Pf-2k Active Site
Length = 468
Score = 27.3 bits (59), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 30/54 (55%), Gaps = 5/54 (9%)
Query: 61 GAARRNVIKAVAT-----PDSAIELPLTAENIESVLDEIRPYLISDGGNVALHE 109
G RR+++K + PD+ L + + + L+++R +L +GG+VA+ +
Sbjct: 75 GQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVRKFLSEEGGHVAVFD 128
>pdb|2BIF|A Chain A, 6-Phosphofructo-2-KinaseFRUCTOSE-2,6-Bisphosphatase H256a
Mutant With F6p In Phosphatase Active Site
pdb|2BIF|B Chain B, 6-Phosphofructo-2-KinaseFRUCTOSE-2,6-Bisphosphatase H256a
Mutant With F6p In Phosphatase Active Site
Length = 469
Score = 27.3 bits (59), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 30/54 (55%), Gaps = 5/54 (9%)
Query: 61 GAARRNVIKAVAT-----PDSAIELPLTAENIESVLDEIRPYLISDGGNVALHE 109
G RR+++K + PD+ L + + + L+++R +L +GG+VA+ +
Sbjct: 76 GQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVRKFLSEEGGHVAVFD 129
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.132 0.374
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,981,595
Number of Sequences: 62578
Number of extensions: 177574
Number of successful extensions: 865
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 845
Number of HSP's gapped (non-prelim): 24
length of query: 186
length of database: 14,973,337
effective HSP length: 93
effective length of query: 93
effective length of database: 9,153,583
effective search space: 851283219
effective search space used: 851283219
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (23.1 bits)