Query 029891
Match_columns 186
No_of_seqs 143 out of 1104
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 08:04:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029891.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029891hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2z51_A NIFU-like protein 2, ch 100.0 3.1E-33 1.1E-37 225.1 10.8 106 80-185 2-107 (154)
2 1xhj_A Nitrogen fixation prote 99.9 1.1E-27 3.7E-32 177.1 8.3 75 83-157 8-82 (88)
3 1veh_A NIFU-like protein hirip 99.9 4E-27 1.4E-31 175.2 7.0 77 84-160 15-92 (92)
4 2z51_A NIFU-like protein 2, ch 99.9 2.7E-26 9.2E-31 184.6 10.5 118 32-154 30-154 (154)
5 1th5_A NIFU1; iron-sulfur clus 99.9 1.2E-24 4.1E-29 156.1 5.1 71 81-155 3-74 (74)
6 2ltm_A NFU1 iron-sulfur cluste 98.1 2.8E-09 9.5E-14 81.0 0.0 53 8-61 38-99 (107)
7 2k1h_A Uncharacterized protein 98.6 4.1E-09 1.4E-13 78.4 -1.1 50 8-59 29-86 (94)
8 1pqx_A Conserved hypothetical 98.5 6.9E-09 2.4E-13 76.7 -0.7 47 8-56 29-83 (91)
9 2ltl_A NIFU-like protein, mito 97.9 1.7E-08 5.9E-13 77.9 0.0 53 8-61 48-111 (119)
10 3cq1_A Putative uncharacterize 97.6 0.00018 6.2E-09 52.8 7.6 69 83-153 7-79 (103)
11 1uwd_A Hypothetical protein TM 97.0 0.0022 7.6E-08 46.8 7.5 70 82-153 6-80 (103)
12 3lno_A Putative uncharacterize 96.7 0.0039 1.3E-07 46.1 6.6 70 83-153 9-83 (108)
13 1th5_A NIFU1; iron-sulfur clus 94.7 0.013 4.3E-07 41.4 1.9 24 162-185 3-26 (74)
14 1xg8_A Hypothetical protein SA 84.7 1.8 6E-05 32.7 5.4 42 123-165 22-64 (111)
15 3ux2_A MIP18 family protein FA 81.3 2.4 8.3E-05 32.7 5.2 40 112-152 49-88 (130)
16 1veh_A NIFU-like protein hirip 75.3 2.4 8.1E-05 30.8 3.3 36 29-65 37-72 (92)
17 1xhj_A Nitrogen fixation prote 71.5 1.8 6.2E-05 31.2 1.9 32 32-64 33-64 (88)
18 3prb_A FKBP-type peptidyl-prol 68.2 17 0.00058 30.1 7.4 74 81-160 150-223 (231)
19 2zzt_A Putative uncharacterize 62.3 39 0.0013 23.9 7.8 60 92-151 13-78 (107)
20 3fry_A Probable copper-exporti 48.6 41 0.0014 21.2 5.2 32 114-154 6-38 (73)
21 2oka_A Hypothetical protein; P 37.5 63 0.0022 23.6 5.3 39 112-155 5-44 (104)
22 1sh8_A Hypothetical protein PA 36.0 57 0.0019 23.7 4.9 40 80-121 3-42 (154)
23 4a4j_A Pacszia, cation-transpo 35.6 66 0.0022 19.5 4.6 32 114-153 3-35 (69)
24 3dfe_A Putative PII-like signa 35.1 27 0.00094 25.6 3.0 28 83-110 69-97 (111)
25 2fa8_A Hypothetical protein AT 34.5 43 0.0015 24.5 3.9 38 113-155 8-46 (105)
26 2npb_A Selenoprotein W; struct 33.0 90 0.0031 22.3 5.4 35 114-153 4-40 (96)
27 4fpp_A Phosphotransferase; fou 32.6 31 0.0011 27.3 3.2 26 94-119 219-245 (247)
28 3hdu_A Putative thioesterase; 32.3 1.5E+02 0.0051 21.8 7.2 56 86-143 15-71 (157)
29 3dxs_X Copper-transporting ATP 29.9 84 0.0029 19.3 4.4 32 114-153 3-35 (74)
30 3byp_A CZRB protein; membrane 28.6 1.3E+02 0.0045 20.0 7.5 18 131-148 60-77 (94)
31 3h90_A Ferrous-iron efflux pum 27.0 2.5E+02 0.0086 22.7 8.6 20 130-149 253-272 (283)
32 3dex_A SAV_2001; alpha-beta pr 26.5 1E+02 0.0034 22.8 4.8 38 113-155 13-51 (107)
33 3zzp_A TS9, ribosomal protein 25.9 34 0.0012 23.6 1.9 23 81-103 55-77 (77)
34 2kjw_A TS9, 30S ribosomal prot 24.8 35 0.0012 24.6 1.9 29 81-109 55-83 (96)
35 2qn6_B Translation initiation 24.6 35 0.0012 24.4 1.9 25 84-108 67-91 (93)
36 2yb5_A FUSC, putative fusidic 24.2 25 0.00084 29.2 1.1 53 129-181 33-86 (215)
37 3lo3_A Uncharacterized conserv 22.9 98 0.0034 21.5 4.0 27 83-109 15-41 (94)
38 3myf_A Sensor protein; HPT, hi 22.9 26 0.0009 25.5 0.9 56 118-180 58-114 (119)
39 3iqt_A Signal transduction his 22.6 27 0.00093 25.7 1.0 54 118-179 67-122 (123)
40 1q8l_A Copper-transporting ATP 22.4 1.2E+02 0.0042 19.0 4.2 32 114-153 10-42 (84)
41 3zxo_A Redox sensor histidine 21.3 80 0.0027 21.4 3.3 27 93-119 96-125 (129)
42 2qwz_A Phenylacetic acid degra 20.4 2.4E+02 0.0081 20.8 6.0 38 81-121 23-60 (159)
No 1
>2z51_A NIFU-like protein 2, chloroplast; CNFU, iron-sulfur cluster biosynthesis, metal transport; 1.35A {Arabidopsis thaliana} PDB: 2jnv_A
Probab=100.00 E-value=3.1e-33 Score=225.06 Aligned_cols=106 Identities=88% Similarity=1.329 Sum_probs=102.3
Q ss_pred CCCcHHHHHHHHHHhcchhhhCCCcEEEEEEeCCEEEEEEcccCCCCcchHHHHHHHHHHHHHhhCCCccEEEEccCccc
Q 029891 80 LPLTAENIESVLDEIRPYLISDGGNVALHEIDGNVVRLKLQGACGSCPSSVMTMKMGIERRLMEKIPEIVAVESVADEET 159 (186)
Q Consensus 80 ~~l~~e~V~~~Ld~IRP~L~~dGGdvelv~vd~g~V~Vrl~GaC~gCpss~~Tl~~~Ie~~L~~~iPeI~~V~~v~~~~~ 159 (186)
++++.++|+++|++|||+|++||||++|++|++++|+|||+|+|+|||+|.+||+++||++|++++|+++.|+.++++..
T Consensus 2 ~~~~~e~v~~~L~~iRP~l~~dGGdvelv~v~~~~V~v~l~GaC~gC~ss~~Tlk~~Ie~~L~~~vpev~~V~~v~~~~e 81 (154)
T 2z51_A 2 VPLTEENVESVLDEIRPYLMSDGGNVALHEIDGNVVRVKLQGACGSCPSSTMTMKMGIERRLMEKIPEIVAVEALPDEET 81 (154)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHTTEEEEEEEEETTEEEEEEEHHHHTCHHHHHHHHHHHHHHHHHHCTTCCEEEECCSSCC
T ss_pred CcchHHHHHHHHHHhChHHHhcCCeEEEEEEECCEEEEEEECCCCCCCccHhHHHHHHHHHHHHhCCCceEEEEccCchh
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCHHHHHHHHHhhhhhhhcccCC
Q 029891 160 GLELNEENIEKVLEEIRPYLVGAAAN 185 (186)
Q Consensus 160 g~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (186)
+.++++++|+++|++|||||...+||
T Consensus 82 ~l~L~~~~v~~~L~~iRP~L~~~dGG 107 (154)
T 2z51_A 82 GLELNEENIEKVLEEIRPYLIGTADG 107 (154)
T ss_dssp SCCSSHHHHHHHHHHHGGGCCGGGCC
T ss_pred hhHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 99999999999999999999986666
No 2
>1xhj_A Nitrogen fixation protein NIFU; alpha-beta, NIFU-like, structural genomics, protein structur initiative, NESG, PSI; NMR {Staphylococcus epidermidis} SCOP: d.52.8.1
Probab=99.94 E-value=1.1e-27 Score=177.05 Aligned_cols=75 Identities=43% Similarity=0.905 Sum_probs=72.3
Q ss_pred cHHHHHHHHHHhcchhhhCCCcEEEEEEeCCEEEEEEcccCCCCcchHHHHHHHHHHHHHhhCCCccEEEEccCc
Q 029891 83 TAENIESVLDEIRPYLISDGGNVALHEIDGNVVRLKLQGACGSCPSSVMTMKMGIERRLMEKIPEIVAVESVADE 157 (186)
Q Consensus 83 ~~e~V~~~Ld~IRP~L~~dGGdvelv~vd~g~V~Vrl~GaC~gCpss~~Tl~~~Ie~~L~~~iPeI~~V~~v~~~ 157 (186)
..++|+++|++|||+||+|||||+|++|++|+|+|||+|+|+|||+|.+||+++||++|++++|+|+.|+.+++.
T Consensus 8 ~~~~I~~~L~~IRP~L~~dGGdvelv~v~~g~V~V~L~GaC~gCpss~~TLk~gIE~~L~~~vPev~~V~~v~~~ 82 (88)
T 1xhj_A 8 MFDQVAEVIERLRPFLLRDGGDCTLVDVEDGIVKLQLHGACGTCPSSTITLKAGIERALHEEVPGVIEVEQVFLE 82 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCEEEEEECCSSEEEEEEESSCCSSCHHHHHHHHHHHHHHHHHSTTCCEEEEEECC
T ss_pred HHHHHHHHHHHhcHHHHhcCCeEEEEEEECCEEEEEEeecCCCCcchHHHHHHHHHHHHHHhCCCceEEEecccc
Confidence 378999999999999999999999999999999999999999999999999999999999999999999998863
No 3
>1veh_A NIFU-like protein hirip5; structural genomics, mouse cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.52.8.1
Probab=99.94 E-value=4e-27 Score=175.21 Aligned_cols=77 Identities=45% Similarity=0.783 Sum_probs=74.1
Q ss_pred HHHHHHHHHH-hcchhhhCCCcEEEEEEeCCEEEEEEcccCCCCcchHHHHHHHHHHHHHhhCCCccEEEEccCcccc
Q 029891 84 AENIESVLDE-IRPYLISDGGNVALHEIDGNVVRLKLQGACGSCPSSVMTMKMGIERRLMEKIPEIVAVESVADEETG 160 (186)
Q Consensus 84 ~e~V~~~Ld~-IRP~L~~dGGdvelv~vd~g~V~Vrl~GaC~gCpss~~Tl~~~Ie~~L~~~iPeI~~V~~v~~~~~g 160 (186)
.++|+.+|++ |||+||+|||||+|++|++|+|+|||+|+|+|||+|.+||+++||++|++++|+|+.|+.+.+|+.|
T Consensus 15 ~~~I~~~L~~~IRP~L~~dGGdvelv~v~~g~V~v~l~GaC~gC~ss~~Tlk~gIE~~L~~~vpev~~V~~v~~~~~~ 92 (92)
T 1veh_A 15 VAMIKELLDTRIRPTVQEDGGDVIYRGFEDGIVRLKLQGSCTSCPSSIITLKSGIQNMLQFYIPEVEGVEQVSGPSSG 92 (92)
T ss_dssp HHHHHHHHHHTTHHHHHHHSCCCCEEEEETTEEEECCCCCCCCCHHHHHHTHHHHHHHHHHHCSSCCCEEECSCSCCC
T ss_pred HHHHHHHHHHHhhHHHHhcCCeEEEEEEeCCEEEEEEeecCCCCCCcHHHHHHHHHHHHHHHCCCCCEEEEcCCCCCC
Confidence 6899999995 9999999999999999999999999999999999999999999999999999999999999988765
No 4
>2z51_A NIFU-like protein 2, chloroplast; CNFU, iron-sulfur cluster biosynthesis, metal transport; 1.35A {Arabidopsis thaliana} PDB: 2jnv_A
Probab=99.93 E-value=2.7e-26 Score=184.59 Aligned_cols=118 Identities=35% Similarity=0.594 Sum_probs=101.7
Q ss_pred eeeeCCeeEeecCCccccchhHHHHHHhhccchh------hhhhhhcCCCCcCCCCCcHHHHHHHHHHhcchhhh-CCCc
Q 029891 32 SFFGERVSLTRWRNPVCHSSCRLLLIRKRGAARR------NVIKAVATPDSAIELPLTAENIESVLDEIRPYLIS-DGGN 104 (186)
Q Consensus 32 ~~f~~~~t~trw~~~l~~~~~~~~~~~~~~~~r~------~~~~~~~~p~~~~~~~l~~e~V~~~Ld~IRP~L~~-dGGd 104 (186)
+-|-++....|+++ .|..|+++.+|.++++++. .+......++...+++++.++|+++||+|||+|++ ||||
T Consensus 30 v~v~~~~V~v~l~G-aC~gC~ss~~Tlk~~Ie~~L~~~vpev~~V~~v~~~~e~l~L~~~~v~~~L~~iRP~L~~~dGGd 108 (154)
T 2z51_A 30 HEIDGNVVRVKLQG-ACGSCPSSTMTMKMGIERRLMEKIPEIVAVEALPDEETGLELNEENIEKVLEEIRPYLIGTADGS 108 (154)
T ss_dssp EEEETTEEEEEEEH-HHHTCHHHHHHHHHHHHHHHHHHCTTCCEEEECCSSCCSCCSSHHHHHHHHHHHGGGCCGGGCCE
T ss_pred EEEECCEEEEEEEC-CCCCCCccHhHHHHHHHHHHHHhCCCceEEEEccCchhhhHHHHHHHHHHHHHHHHHhhhcCCCC
Confidence 34444667779999 9999999999999998864 33333344566666789999999999999999997 9999
Q ss_pred EEEEEEeCCEEEEEEcccCCCCcchHHHHHHHHHHHHHhhCCCccEEEEc
Q 029891 105 VALHEIDGNVVRLKLQGACGSCPSSVMTMKMGIERRLMEKIPEIVAVESV 154 (186)
Q Consensus 105 velv~vd~g~V~Vrl~GaC~gCpss~~Tl~~~Ie~~L~~~iPeI~~V~~v 154 (186)
+||++|++++|+|||+|+|++| +|++.+||++|++++|+|++|+.+
T Consensus 109 velv~v~~~~v~v~l~Gac~~~----~Tlk~~Ie~~l~e~vP~i~~V~~~ 154 (154)
T 2z51_A 109 LDLVEIEDPIVKIRITGPAAGV----MTVRVAVTQKLREKIPSIAAVQLI 154 (154)
T ss_dssp EEEEEEETTEEEEEEESGGGGC----HHHHHHHHHHHHHHCTTCCEEEEC
T ss_pred eEEEEEECCEEEEEEecCCccc----HhHHHHHHHHHHHHCCCccEEEeC
Confidence 9999999999999999999998 799999999999999999999864
No 5
>1th5_A NIFU1; iron-sulfur cluster binding, structural genomics, program for RICE genome research, unknown function; NMR {Oryza sativa} SCOP: d.52.8.1
Probab=99.90 E-value=1.2e-24 Score=156.07 Aligned_cols=71 Identities=38% Similarity=0.716 Sum_probs=67.8
Q ss_pred CCcHHHHHHHHHHhcchhhhCC-CcEEEEEEeCCEEEEEEcccCCCCcchHHHHHHHHHHHHHhhCCCccEEEEcc
Q 029891 81 PLTAENIESVLDEIRPYLISDG-GNVALHEIDGNVVRLKLQGACGSCPSSVMTMKMGIERRLMEKIPEIVAVESVA 155 (186)
Q Consensus 81 ~l~~e~V~~~Ld~IRP~L~~dG-Gdvelv~vd~g~V~Vrl~GaC~gCpss~~Tl~~~Ie~~L~~~iPeI~~V~~v~ 155 (186)
+++.++|+++|++|||+|++|| ||++|++|++++|+|||+|+|+|| +||+++||++|++++|+|++|+.++
T Consensus 3 ~~~~~~V~~~L~~iRP~L~~dGGGdvelv~v~~g~V~v~l~GaC~gc----~Tlk~gIe~~L~~~vpei~~V~~v~ 74 (74)
T 1th5_A 3 ELNEENVEKVLNEIRPYLAGTGGGGLQFLMIKGPIVKVRLTGPAAVV----RTVRIAVSKKLREKIPSIQIVQLLS 74 (74)
T ss_dssp CCSHHHHHHHHTTTHHHHTTTTCCCCCCCEEETTEEEECCCSSSSSS----SSHHHHHHHHHHHHCTTCSEEEECC
T ss_pred hHHHHHHHHHHHHHhHHHHhcCCCcEEEEEEeCCEEEEEEecCCcch----HHHHHHHHHHHHHHCCCCcEEEeCC
Confidence 5679999999999999999999 999999999999999999999999 6999999999999999999999863
No 6
>2ltm_A NFU1 iron-sulfur cluster scaffold homolog, mitoch; structural genomics, northeast structural genomics consortiu PSI-biology; NMR {Homo sapiens}
Probab=98.10 E-value=2.8e-09 Score=81.03 Aligned_cols=53 Identities=15% Similarity=0.270 Sum_probs=49.9
Q ss_pred CCCCCCCCCCCCCCccCCC--CCCceeeeeCCe-eEee------cCCccccchhHHHHHHhhc
Q 029891 8 PSYSRPHQTLDSPSCSRPA--SKSTKSFFGERV-SLTR------WRNPVCHSSCRLLLIRKRG 61 (186)
Q Consensus 8 ~s~~~~~~a~~spLa~~lf--~~v~~~~f~~~~-t~tr------w~~~l~~~~~~~~~~~~~~ 61 (186)
.+|.++++|..||||++|| +||+.|||+++| |||| |+. +++.+...|++++++
T Consensus 38 ~eF~~~~~a~~SPLA~~LF~i~gVk~Vf~g~dFITVtK~~~~~dW~~-ikp~V~~~I~~~~~s 99 (107)
T 2ltm_A 38 MDFPTPAAAFRSPLARQLFRIEGVKSVFFGPDSITVTKENEELDWNL-LKPDIYATIMDFFAS 99 (107)
Confidence 6799999999999999999 999999999999 9999 998 999999999999754
No 7
>2k1h_A Uncharacterized protein Ser13; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Staphylococcus epidermidis}
Probab=98.57 E-value=4.1e-09 Score=78.35 Aligned_cols=50 Identities=10% Similarity=0.159 Sum_probs=46.7
Q ss_pred CCCCCCCCCCCCCCccCCC--CCCceeeeeCCe-eEee-----cCCccccchhHHHHHHh
Q 029891 8 PSYSRPHQTLDSPSCSRPA--SKSTKSFFGERV-SLTR-----WRNPVCHSSCRLLLIRK 59 (186)
Q Consensus 8 ~s~~~~~~a~~spLa~~lf--~~v~~~~f~~~~-t~tr-----w~~~l~~~~~~~~~~~~ 59 (186)
.+|.+.+ |..||||++|| +||++|||+++| |||| |+. +++.+...|++.+
T Consensus 29 ~~f~~~~-a~~SPLA~~LF~i~gVk~Vf~g~dFITVtK~~~~dW~~-ikp~I~~~I~~~~ 86 (94)
T 2k1h_A 29 TTYTAAQ-EGQPEFINRLFEIEGVKSIFYVLDFISIDKEDNANWNE-LLPQIENTFAKSN 86 (94)
T ss_dssp CEECCCC-TTSCHHHHHHHTSTTEEEEEEETTEEEEEECTTCCHHH-HHHHHHHHHHHHC
T ss_pred eecCCcc-ccCCHHHHHhhCCCCeeEEEEeCCEEEEecCCCCCHHH-HHHHHHHHHHHHH
Confidence 5689998 99999999999 999999999999 9999 998 9999999999875
No 8
>1pqx_A Conserved hypothetical protein; ZR18,structure, autostructure,spins,autoassign, northeast structural genomics consortium; NMR {Staphylococcus aureus subsp} SCOP: d.267.1.1 PDB: 2ffm_A
Probab=98.54 E-value=6.9e-09 Score=76.71 Aligned_cols=47 Identities=11% Similarity=0.150 Sum_probs=43.3
Q ss_pred CCCCCCCCCCCCCCccCCC--CCCceeeeeCCe-eEee-----cCCccccchhHHHH
Q 029891 8 PSYSRPHQTLDSPSCSRPA--SKSTKSFFGERV-SLTR-----WRNPVCHSSCRLLL 56 (186)
Q Consensus 8 ~s~~~~~~a~~spLa~~lf--~~v~~~~f~~~~-t~tr-----w~~~l~~~~~~~~~ 56 (186)
.+|.+.+ |..||||++|| +||++|||+++| |||| |+. +++.+...|+
T Consensus 29 ~~F~~~~-a~~SPLA~~LF~i~gVk~Vf~g~dFITVtK~~~~dW~~-ikp~V~~~I~ 83 (91)
T 1pqx_A 29 DTYTKVD-DSQPAFINDILKVEGVKSIFHVMDFISVDKENDANWET-VLPKVEAVFE 83 (91)
T ss_dssp EEESSSC-SSCCHHHHHHHHSTTEEEEEEETTEEEEEECTTSCSTT-THHHHHHHTC
T ss_pred eEeCCcc-ccCCHHHHHhhCCCCeeEEEEeCCEEEEecCCCCCHHH-HHHHHHHHHH
Confidence 5788988 99999999999 999999999999 9999 998 8998887765
No 9
>2ltl_A NIFU-like protein, mitochondrial; structural genomics, northeast structural consortium, NESG, PSI-biology; NMR {Saccharomyces cerevisiae}
Probab=97.86 E-value=1.7e-08 Score=77.94 Aligned_cols=53 Identities=11% Similarity=0.168 Sum_probs=49.0
Q ss_pred CCCCCCCCCC--CCCCccCCC---CCCceeeeeCCe-eEee-----cCCccccchhHHHHHHhhc
Q 029891 8 PSYSRPHQTL--DSPSCSRPA---SKSTKSFFGERV-SLTR-----WRNPVCHSSCRLLLIRKRG 61 (186)
Q Consensus 8 ~s~~~~~~a~--~spLa~~lf---~~v~~~~f~~~~-t~tr-----w~~~l~~~~~~~~~~~~~~ 61 (186)
.+|.++++|. .||||++|| +||+.|||+++| |||| |+. +++.+...|++++++
T Consensus 48 ~~f~~~~~a~~~~SPLA~~LF~~i~GV~~Vf~g~DFITVtK~~~~dW~~-ikp~I~~~I~e~~~s 111 (119)
T 2ltl_A 48 IVIKNTDENLINHSKLAQQIFLQCPGVESLMIGDDFLTINKDRMVHWNS-IKPEIIDLLTKQLAY 111 (119)
Confidence 4689999998 899999999 799999999999 9999 998 999999999998654
No 10
>3cq1_A Putative uncharacterized protein TTHB138; DTDP-4-keto-L-rhamnose reductase, plasmid, oxidoreductase, structural genomics, NPPSFA; 1.90A {Thermus thermophilus} PDB: 2cu6_A 3cq2_A 3cq3_A*
Probab=97.63 E-value=0.00018 Score=52.75 Aligned_cols=69 Identities=16% Similarity=0.227 Sum_probs=59.3
Q ss_pred cHHHHHHHHHH-hcchhhhCC---CcEEEEEEeCCEEEEEEcccCCCCcchHHHHHHHHHHHHHhhCCCccEEEE
Q 029891 83 TAENIESVLDE-IRPYLISDG---GNVALHEIDGNVVRLKLQGACGSCPSSVMTMKMGIERRLMEKIPEIVAVES 153 (186)
Q Consensus 83 ~~e~V~~~Ld~-IRP~L~~dG---Gdvelv~vd~g~V~Vrl~GaC~gCpss~~Tl~~~Ie~~L~~~iPeI~~V~~ 153 (186)
++++|.++|.. +.|.+..+- |-|.=+.++++.|+|.+.-.+.+||.. ..++..|+++|+ .+|.+..|+.
T Consensus 7 ~~~~V~~aL~~V~DPel~~~iv~lG~V~~v~v~~~~V~v~l~lt~~~cp~~-~~l~~~i~~al~-~l~gv~~V~V 79 (103)
T 3cq1_A 7 LEAQAWALLEAVYDPELGLDVVNLGLIYDLVVEPPRAYVRMTLTTPGCPLH-DSLGEAVRQALS-RLPGVEEVEV 79 (103)
T ss_dssp HHHHHHHHHTTCBCTTTCSBTTTTTCEEEEEEETTEEEEEECCSSSSCCSS-CHHHHHHHHHHH-TSTTCCEEEE
T ss_pred HHHHHHHHHhCCCCCCCCcCchhcCceEEEEEECCEEEEEEEECCCCCcHH-HHHHHHHHHHHH-hCCCceeEEE
Confidence 57889999987 789998876 888889999999999999999999985 458899999997 5899887753
No 11
>1uwd_A Hypothetical protein TM0487; similar to PAAD protein, alpha/beta fold,structural genomics joint center for structural genomics, JCSG; NMR {Thermotoga maritima} SCOP: d.52.8.2 PDB: 1wcj_A
Probab=97.05 E-value=0.0022 Score=46.80 Aligned_cols=70 Identities=26% Similarity=0.249 Sum_probs=56.7
Q ss_pred CcHHHHHHHHHHhc-chhhhCC---CcEEEEEEeC-CEEEEEEcccCCCCcchHHHHHHHHHHHHHhhCCCccEEEE
Q 029891 82 LTAENIESVLDEIR-PYLISDG---GNVALHEIDG-NVVRLKLQGACGSCPSSVMTMKMGIERRLMEKIPEIVAVES 153 (186)
Q Consensus 82 l~~e~V~~~Ld~IR-P~L~~dG---Gdvelv~vd~-g~V~Vrl~GaC~gCpss~~Tl~~~Ie~~L~~~iPeI~~V~~ 153 (186)
.+.++|.++|..|. |.+..+- |-|.=+.+++ |.|+|.+.-.+.+||.. ..++..|+++|+ .+|++..|..
T Consensus 6 ~~~~~V~~aL~~V~DPel~~~iv~lG~V~~v~v~~~~~V~v~l~lt~~~cp~~-~~l~~~i~~al~-~l~gv~~v~V 80 (103)
T 1uwd_A 6 VTKEDVLNALKNVIDFELGLDVVSLGLVYDIQIDDQNNVKVLMTMTTPMCPLA-GMILSDAEEAIK-KIEGVNNVEV 80 (103)
T ss_dssp CCHHHHHHHHTTCBCTTTSSBTTTTTCCCCEEECTTCEEEEEECCSSSCCSSH-HHHHHHHHHHHH-TSSSCCEEEE
T ss_pred chHHHHHHHHcCCCCCCCCcChhhcCCeeEEEEcCCCEEEEEEEECCCCCcHH-HHHHHHHHHHHH-hCCCcceEEE
Confidence 36789999999754 8887655 6677778885 89999999999999974 568899999997 5898887753
No 12
>3lno_A Putative uncharacterized protein; alpha-beta fold, structural genomics, center for structural genomics of infectious diseases, csgid; 2.10A {Bacillus anthracis} SCOP: d.52.8.0
Probab=96.72 E-value=0.0039 Score=46.12 Aligned_cols=70 Identities=21% Similarity=0.274 Sum_probs=56.4
Q ss_pred cHHHHHHHHHH-hcchhhhC---CCcEEEEEEeC-CEEEEEEcccCCCCcchHHHHHHHHHHHHHhhCCCccEEEE
Q 029891 83 TAENIESVLDE-IRPYLISD---GGNVALHEIDG-NVVRLKLQGACGSCPSSVMTMKMGIERRLMEKIPEIVAVES 153 (186)
Q Consensus 83 ~~e~V~~~Ld~-IRP~L~~d---GGdvelv~vd~-g~V~Vrl~GaC~gCpss~~Tl~~~Ie~~L~~~iPeI~~V~~ 153 (186)
+.++|..+|.. +-|.+..+ -|-|.=+.+++ |.|+|.|.-...+||... .++..|+++|+..+|++.+|..
T Consensus 9 ~~~~V~~aL~~V~DPe~~~~Iv~lG~V~~I~v~~~~~V~V~ltlt~p~cp~~~-~i~~~i~~al~~~l~Gv~~V~V 83 (108)
T 3lno_A 9 FENKLYANLEAVIDPELGVDIVNLGLVYDVTADENNNAVITMTMTSIGCPMAG-QIVSDVKKVLSTNVPEVNEIEV 83 (108)
T ss_dssp HHHHHHHHGGGCEETTTTEEHHHHTCEEEEEECTTCCEEEEECCSCTTCTTHH-HHHHHHHHHHHHHCTTCCCEEE
T ss_pred hHHHHHHHHcCCCCCCCCCCHHHcCCceEEEECCCCeEEEEEEECCCCCcHHH-HHHHHHHHHHHHhCCCCceEEE
Confidence 46778888876 57776533 47788888885 899999999999999875 6889999999777999987753
No 13
>1th5_A NIFU1; iron-sulfur cluster binding, structural genomics, program for RICE genome research, unknown function; NMR {Oryza sativa} SCOP: d.52.8.1
Probab=94.71 E-value=0.013 Score=41.41 Aligned_cols=24 Identities=71% Similarity=1.124 Sum_probs=21.8
Q ss_pred ccCHHHHHHHHHhhhhhhhcccCC
Q 029891 162 ELNEENIEKVLEEIRPYLVGAAAN 185 (186)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~ 185 (186)
+++.++|+++|++|||||..-|||
T Consensus 3 ~~~~~~V~~~L~~iRP~L~~dGGG 26 (74)
T 1th5_A 3 ELNEENVEKVLNEIRPYLAGTGGG 26 (74)
T ss_dssp CCSHHHHHHHHTTTHHHHTTTTCC
T ss_pred hHHHHHHHHHHHHHhHHHHhcCCC
Confidence 578899999999999999998866
No 14
>1xg8_A Hypothetical protein SA0798; structural genomics, protein structure initative, MCSG, PSI, protein structure initiative; 2.10A {Staphylococcus aureus subsp} SCOP: c.47.1.17
Probab=84.68 E-value=1.8 Score=32.72 Aligned_cols=42 Identities=19% Similarity=0.232 Sum_probs=26.5
Q ss_pred CCCCcchHHHHHHHHHHHHHhhCCCc-cEEEEccCcccccccCH
Q 029891 123 CGSCPSSVMTMKMGIERRLMEKIPEI-VAVESVADEETGLELNE 165 (186)
Q Consensus 123 C~gCpss~~Tl~~~Ie~~L~~~iPeI-~~V~~v~~~~~g~~~~~ 165 (186)
|.+=|+|.-|. +|++++|++++|+. -+++=++-+..-++|++
T Consensus 22 CVnaPSSkeTy-EWLqAal~RKyp~~~f~~~YIDI~~~~~~l~d 64 (111)
T 1xg8_A 22 CVNAPTSKDIY-DWLQPLLKRKYPNISFKYTYIDITKDNDNLTD 64 (111)
T ss_dssp GSSSCCHHHHH-HHHHHHHHHHCTTSCEEEEEEETTTC---CCH
T ss_pred ccCCCCchhHH-HHHHHHHhCcCCCCceEEEEEeccCCccchhH
Confidence 44447777777 89999999999975 44444444444445555
No 15
>3ux2_A MIP18 family protein FAM96A; immune system, DUF59, 3D domain swapping, protein-protein interaction, alpha and beta protein (A+B); HET: MSE; 1.80A {Homo sapiens} PDB: 3ux3_A
Probab=81.34 E-value=2.4 Score=32.67 Aligned_cols=40 Identities=13% Similarity=0.277 Sum_probs=33.8
Q ss_pred CCEEEEEEcccCCCCcchHHHHHHHHHHHHHhhCCCccEEE
Q 029891 112 GNVVRLKLQGACGSCPSSVMTMKMGIERRLMEKIPEIVAVE 152 (186)
Q Consensus 112 ~g~V~Vrl~GaC~gCpss~~Tl~~~Ie~~L~~~iPeI~~V~ 152 (186)
++.|.|.|+=.=.+||++.. +...|+.+|.+.+|...+|.
T Consensus 49 ~~~V~V~~TPT~p~Cp~a~~-I~l~Ir~kL~~~lp~~~kV~ 88 (130)
T 3ux2_A 49 EYLVIIRFTPTVPHCSLATL-IGLCLRVKLQRCLPFKHKLE 88 (130)
T ss_dssp EEEEEECCCCCCCSSCHHHH-HHHHHHHHHHHHCSSCCCCC
T ss_pred CCeEEEEEEeCCCCCCchHH-HHHHHHHHHHHhCCCceEEE
Confidence 35799999999999999976 66899999999898876665
No 16
>1veh_A NIFU-like protein hirip5; structural genomics, mouse cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.52.8.1
Probab=75.28 E-value=2.4 Score=30.76 Aligned_cols=36 Identities=14% Similarity=0.172 Sum_probs=29.4
Q ss_pred CceeeeeCCeeEeecCCccccchhHHHHHHhhccchh
Q 029891 29 STKSFFGERVSLTRWRNPVCHSSCRLLLIRKRGAARR 65 (186)
Q Consensus 29 v~~~~f~~~~t~trw~~~l~~~~~~~~~~~~~~~~r~ 65 (186)
+.-+-|-++....|+++ .|..|+++.+|.++++++.
T Consensus 37 velv~v~~g~V~v~l~G-aC~gC~ss~~Tlk~gIE~~ 72 (92)
T 1veh_A 37 VIYRGFEDGIVRLKLQG-SCTSCPSSIITLKSGIQNM 72 (92)
T ss_dssp CCEEEEETTEEEECCCC-CCCCCHHHHHHTHHHHHHH
T ss_pred EEEEEEeCCEEEEEEee-cCCCCCCcHHHHHHHHHHH
Confidence 44455656778889999 9999999999999888753
No 17
>1xhj_A Nitrogen fixation protein NIFU; alpha-beta, NIFU-like, structural genomics, protein structur initiative, NESG, PSI; NMR {Staphylococcus epidermidis} SCOP: d.52.8.1
Probab=71.47 E-value=1.8 Score=31.16 Aligned_cols=32 Identities=13% Similarity=0.150 Sum_probs=25.8
Q ss_pred eeeeCCeeEeecCCccccchhHHHHHHhhccch
Q 029891 32 SFFGERVSLTRWRNPVCHSSCRLLLIRKRGAAR 64 (186)
Q Consensus 32 ~~f~~~~t~trw~~~l~~~~~~~~~~~~~~~~r 64 (186)
+-|-++....|.++ +|..|+++.+|.++++++
T Consensus 33 v~v~~g~V~V~L~G-aC~gCpss~~TLk~gIE~ 64 (88)
T 1xhj_A 33 VDVEDGIVKLQLHG-ACGTCPSSTITLKAGIER 64 (88)
T ss_dssp EECCSSEEEEEEES-SCCSSCHHHHHHHHHHHH
T ss_pred EEEECCEEEEEEee-cCCCCcchHHHHHHHHHH
Confidence 33435668889999 999999999999888765
No 18
>3prb_A FKBP-type peptidyl-prolyl CIS-trans isomerase; chaperone; 2.20A {Methanocaldococcus jannaschii} PDB: 3prd_A
Probab=68.23 E-value=17 Score=30.12 Aligned_cols=74 Identities=18% Similarity=0.238 Sum_probs=53.0
Q ss_pred CCcHHHHHHHHHHhcchhhhCCCcEEEEEEeCCEEEEEEcccCCCCcchHHHHHHHHHHHHHhhCCCccEEEEccCcccc
Q 029891 81 PLTAENIESVLDEIRPYLISDGGNVALHEIDGNVVRLKLQGACGSCPSSVMTMKMGIERRLMEKIPEIVAVESVADEETG 160 (186)
Q Consensus 81 ~l~~e~V~~~Ld~IRP~L~~dGGdvelv~vd~g~V~Vrl~GaC~gCpss~~Tl~~~Ie~~L~~~iPeI~~V~~v~~~~~g 160 (186)
+-+.++|+.++...-|.+ + +++ +.+++++++|.+.-.+.. ...-+..+..|.+.|.++++++.+|+.+.....-
T Consensus 150 eat~eei~~~~~~~~~~~--~--~~~-~~~~~~~~~i~~p~~~~~-~~~~~~~k~~~~~~i~~~~~~~~~v~~~e~~~~~ 223 (231)
T 3prb_A 150 DDKKNIVKEIVKMYVPRL--S--DVK-VTIRNGTVKIELPEFAPF-IPNIQTAKMAIANEILKRLEDAEKVSFVETFERK 223 (231)
T ss_dssp CSHHHHHHHHHHHHCTTC--C--CCE-EEEETTEEEEECCTTGGG-STTHHHHHHHHHHHHHHHCTTCCEEEEEEEEECC
T ss_pred cCCHHHHHHHHHHhcCCc--c--ceE-EEEeCCeEEEEcCHHHhh-hhHHHHHHHHHHHHHHHhccccceEEEEEEEecc
Confidence 445788888887654433 1 233 677899999999876643 2445667889999999999999999876654433
No 19
>2zzt_A Putative uncharacterized protein; cation diffusion facilitator (CDF), transporter, zinc, membrane protein, cytosolic domain; 2.84A {Thermotoga maritima}
Probab=62.32 E-value=39 Score=23.93 Aligned_cols=60 Identities=13% Similarity=0.189 Sum_probs=33.1
Q ss_pred HHhcchhhhCCCcEEEEEEe----CCEEEEEEcccCC-CCc-chHHHHHHHHHHHHHhhCCCccEE
Q 029891 92 DEIRPYLISDGGNVALHEID----GNVVRLKLQGACG-SCP-SSVMTMKMGIERRLMEKIPEIVAV 151 (186)
Q Consensus 92 d~IRP~L~~dGGdvelv~vd----~g~V~Vrl~GaC~-gCp-ss~~Tl~~~Ie~~L~~~iPeI~~V 151 (186)
++|+-.|.+..|-..+.++. |+.+.+.+.=... ..+ ...-.+...|+..|++.+|.|..|
T Consensus 13 ~~I~~~l~~~~gV~~vh~lr~r~~G~~~~v~~hI~v~~~~sv~eah~i~~~ie~~L~~~~~~i~~v 78 (107)
T 2zzt_A 13 DDIFAVLERFPNVHNPHRVRIRRVGTKYFIEMDIEVDGKMSVKDAHELTVKIRKEMLKRRDDIEDV 78 (107)
T ss_dssp HHHHHHHTTCSSCEEEEEEEEECSCC-CEEEEEEEECTTSCHHHHHHHHHHHHHHHHHHCTTCCEE
T ss_pred HHHHHHHHcCCCccccEEEEEEEECCcEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCcEE
Confidence 34444555666766666664 4433333221111 111 122357789999999999987654
No 20
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=48.59 E-value=41 Score=21.16 Aligned_cols=32 Identities=22% Similarity=0.406 Sum_probs=22.1
Q ss_pred EEEEEEcc-cCCCCcchHHHHHHHHHHHHHhhCCCccEEEEc
Q 029891 114 VVRLKLQG-ACGSCPSSVMTMKMGIERRLMEKIPEIVAVESV 154 (186)
Q Consensus 114 ~V~Vrl~G-aC~gCpss~~Tl~~~Ie~~L~~~iPeI~~V~~v 154 (186)
...++..| .|.+|. ..|+++|++ |.+..+..-
T Consensus 6 ~~~~~v~gm~C~~C~-------~~ie~~l~~--~gv~~~~v~ 38 (73)
T 3fry_A 6 KIVLELSGLSCHHCV-------ARVKKALEE--AGAKVEKVD 38 (73)
T ss_dssp EEEEEEESSBCGGGH-------HHHHHHHHH--TTCEEEEEC
T ss_pred EEEEEECCCCCHHHH-------HHHHHHhcc--CCcEEEEEE
Confidence 45667777 577772 467888887 888877643
No 21
>2oka_A Hypothetical protein; PAR82, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.50A {Pseudomonas aeruginosa} PDB: 2obk_A
Probab=37.51 E-value=63 Score=23.65 Aligned_cols=39 Identities=10% Similarity=0.209 Sum_probs=27.7
Q ss_pred CCEEEEEEcccCCCCcchHHHHHHHHHHHHHhhCCC-ccEEEEcc
Q 029891 112 GNVVRLKLQGACGSCPSSVMTMKMGIERRLMEKIPE-IVAVESVA 155 (186)
Q Consensus 112 ~g~V~Vrl~GaC~gCpss~~Tl~~~Ie~~L~~~iPe-I~~V~~v~ 155 (186)
...|.|.| |.+|...... .+..+.|...||+ +.+|..+.
T Consensus 5 ~p~V~I~Y---C~~C~~~~Ra--~~laqeLl~tF~~~l~~v~l~P 44 (104)
T 2oka_A 5 KPEIVITY---CTQCQWLLRA--AWLAQELLSTFADDLGKVCLEP 44 (104)
T ss_dssp CCEEEEEE---ETTTTCHHHH--HHHHHHHHHHSTTTCSEEEEEE
T ss_pred CCEEEEEE---CCCCCChHHH--HHHHHHHHHHcCcccceEEEEe
Confidence 45778877 6666666554 4788999999986 66776554
No 22
>1sh8_A Hypothetical protein PA5026; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.50A {Pseudomonas aeruginosa} SCOP: d.38.1.5
Probab=35.95 E-value=57 Score=23.67 Aligned_cols=40 Identities=23% Similarity=0.462 Sum_probs=32.2
Q ss_pred CCCcHHHHHHHHHHhcchhhhCCCcEEEEEEeCCEEEEEEcc
Q 029891 80 LPLTAENIESVLDEIRPYLISDGGNVALHEIDGNVVRLKLQG 121 (186)
Q Consensus 80 ~~l~~e~V~~~Ld~IRP~L~~dGGdvelv~vd~g~V~Vrl~G 121 (186)
++++.+.++..+..--|+.+..| ++++.++++.+.+++.-
T Consensus 3 ~~~~~~~~~~~~~~~~p~~~~lg--~~~~~~~~~~~~~~~~~ 42 (154)
T 1sh8_A 3 MPLPTELARHLTEEKIAFVQRSG--LRAEVLEPGYVRLRMPG 42 (154)
T ss_dssp CSSCHHHHHHHHHHSSHHHHHHT--CEEEEEETTEEEEEECS
T ss_pred CCcCHHHHHHHhhccCCchhhcc--eEEEEEeCCeEEEEccC
Confidence 56788999999987679888876 56778888888888853
No 23
>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A
Probab=35.61 E-value=66 Score=19.47 Aligned_cols=32 Identities=34% Similarity=0.777 Sum_probs=20.1
Q ss_pred EEEEEEcc-cCCCCcchHHHHHHHHHHHHHhhCCCccEEEE
Q 029891 114 VVRLKLQG-ACGSCPSSVMTMKMGIERRLMEKIPEIVAVES 153 (186)
Q Consensus 114 ~V~Vrl~G-aC~gCpss~~Tl~~~Ie~~L~~~iPeI~~V~~ 153 (186)
.+.++..| .|.+|. ..|+++|+ .+|.+..|..
T Consensus 3 ~~~~~v~gm~C~~C~-------~~i~~~l~-~~~gv~~~~v 35 (69)
T 4a4j_A 3 TINLQLEGMDCTSCA-------SSIERAIA-KVPGVQSCQV 35 (69)
T ss_dssp EEEEEEESCCSHHHH-------HHHHHHHH-TSTTEEEEEE
T ss_pred EEEEEECCeecHHHH-------HHHHHHHh-cCCCeEEEEE
Confidence 45667777 455442 35677776 4788877754
No 24
>3dfe_A Putative PII-like signaling protein; YP_323533.1, structur genomics, joint center for structural genomics, JCSG; 2.35A {Anabaena variabilis atcc 29413} SCOP: d.58.5.0
Probab=35.10 E-value=27 Score=25.57 Aligned_cols=28 Identities=18% Similarity=0.315 Sum_probs=24.4
Q ss_pred cHHHHHHHHHHh-cchhhhCCCcEEEEEE
Q 029891 83 TAENIESVLDEI-RPYLISDGGNVALHEI 110 (186)
Q Consensus 83 ~~e~V~~~Ld~I-RP~L~~dGGdvelv~v 110 (186)
++++++.+++.| +|+...++|-+-+.++
T Consensus 69 ~de~vd~vv~~I~~~~~t~~~G~ifVsdV 97 (111)
T 3dfe_A 69 NREMAEKIADQVAIKFFTDYAGIIYICEA 97 (111)
T ss_dssp SHHHHHHHHHHHHHHHTTTSCEEEEEEEE
T ss_pred CHHHHHHHHHHHHHHhhCCCCEEEEEEEe
Confidence 478999999985 8999999998888888
No 25
>2fa8_A Hypothetical protein ATU0228; ALPH-beta structure, 4 helix bundle, structural genomics, PS protein structure initiative; 1.90A {Agrobacterium tumefaciens str} SCOP: c.47.1.23
Probab=34.48 E-value=43 Score=24.55 Aligned_cols=38 Identities=11% Similarity=0.291 Sum_probs=27.4
Q ss_pred CEEEEEEcccCCCCcchHHHHHHHHHHHHHhhCCC-ccEEEEcc
Q 029891 113 NVVRLKLQGACGSCPSSVMTMKMGIERRLMEKIPE-IVAVESVA 155 (186)
Q Consensus 113 g~V~Vrl~GaC~gCpss~~Tl~~~Ie~~L~~~iPe-I~~V~~v~ 155 (186)
..|.|.| |.+|...... .++.+.|...||+ +.+|..+.
T Consensus 8 ~~V~I~Y---C~~C~~~~Ra--~~laqeLl~tF~~~l~~V~l~P 46 (105)
T 2fa8_A 8 PRIAIRY---CTQCNWLLRA--GWMAQEILQTFASDIGEVSLIP 46 (105)
T ss_dssp CEEEEEE---ETTTTCHHHH--HHHHHHHHHHHGGGCSEEEEEE
T ss_pred CEEEEEE---CCCCCCHHHH--HHHHHHHHHHcCcccceEEEEc
Confidence 4677877 7777776654 5788899999987 56776544
No 26
>2npb_A Selenoprotein W; structure, thioredoxin-like fold, oxidoreductase; NMR {Mus musculus}
Probab=33.00 E-value=90 Score=22.33 Aligned_cols=35 Identities=20% Similarity=0.387 Sum_probs=23.9
Q ss_pred EEEEEEcccCCCCcchHHHHHHHHHHHHHhhCCC-cc-EEEE
Q 029891 114 VVRLKLQGACGSCPSSVMTMKMGIERRLMEKIPE-IV-AVES 153 (186)
Q Consensus 114 ~V~Vrl~GaC~gCpss~~Tl~~~Ie~~L~~~iPe-I~-~V~~ 153 (186)
.|.|.| |.+|...... ..+.+.|...||+ +. .+..
T Consensus 4 ~V~I~Y---C~~C~y~~ra--~~laqeLl~~Fp~~l~V~~~l 40 (96)
T 2npb_A 4 AVRVVY---SGACGYKPKY--LQLKEKLEHEFPGCLDICGEG 40 (96)
T ss_dssp EEEEEC---CCCSCHHHHH--HHHHHHHHHHSBTTEEEEECC
T ss_pred EEEEEE---cCCCCCHHHH--HHHHHHHHHhCCcceEEEEEE
Confidence 355555 7777765544 5889999999998 54 4433
No 27
>4fpp_A Phosphotransferase; four helix bundle, bergerat fold, CCKA, CTRA, CPDR, bacterial cytoplasme; 2.20A {Caulobacter crescentus} PDB: 4fmt_A
Probab=32.65 E-value=31 Score=27.30 Aligned_cols=26 Identities=12% Similarity=0.254 Sum_probs=17.8
Q ss_pred hcchhhhCCCcEEEEEEeCC-EEEEEE
Q 029891 94 IRPYLISDGGNVALHEIDGN-VVRLKL 119 (186)
Q Consensus 94 IRP~L~~dGGdvelv~vd~g-~V~Vrl 119 (186)
+|-.++.|||.|.+-+-++| +++|+|
T Consensus 219 ~~~iv~~hGG~i~v~s~~~G~~f~v~L 245 (247)
T 4fpp_A 219 LNALVRAAGGQIAVEIGEDRASIAAWV 245 (247)
T ss_dssp HHHHHHHTTCEEEEEEETTEEEEEEEE
T ss_pred HHHHHHHcCCEEEEEEcCCEEEEEEEe
Confidence 56678999999998664444 344443
No 28
>3hdu_A Putative thioesterase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 2.50A {Syntrophus aciditrophicus SB}
Probab=32.33 E-value=1.5e+02 Score=21.78 Aligned_cols=56 Identities=13% Similarity=0.152 Sum_probs=35.8
Q ss_pred HHHHHHHHhcchhhhCCCcEEEEEEeCCEEEEEEcccCCCCcc-hHHHHHHHHHHHHHh
Q 029891 86 NIESVLDEIRPYLISDGGNVALHEIDGNVVRLKLQGACGSCPS-SVMTMKMGIERRLME 143 (186)
Q Consensus 86 ~V~~~Ld~IRP~L~~dGGdvelv~vd~g~V~Vrl~GaC~gCps-s~~Tl~~~Ie~~L~~ 143 (186)
+|++.+.+--|+.+.-| ++++++++|.+.++|.-.-.-|.- ..-++..++-..|.+
T Consensus 15 ~l~~~~~~~~p~~~~lG--~~~~~~~~g~~~~~~~~~~~~~~Np~~G~~HGG~iatl~D 71 (157)
T 3hdu_A 15 AVNEIFEEKIPFNKIIG--LKVRFISPEQVKLSFEMRDELIGNAIRRMLYGGVISSAID 71 (157)
T ss_dssp HHHHHHHTSCGGGGTEE--EEEEEECSSEEEEEEEESSCCTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCCcHHHhcC--CEEEEecCCEEEEEEECCHHHhCCCCCCeEcHHHHHHHHH
Confidence 33333333458877765 888999999888888766555532 234566666665554
No 29
>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like fold, ATP- binding, ethylene signaling pathway, hydrolase, ION transport; 1.70A {Arabidopsis thaliana} SCOP: d.58.17.0
Probab=29.88 E-value=84 Score=19.30 Aligned_cols=32 Identities=19% Similarity=0.562 Sum_probs=20.2
Q ss_pred EEEEEEcc-cCCCCcchHHHHHHHHHHHHHhhCCCccEEEE
Q 029891 114 VVRLKLQG-ACGSCPSSVMTMKMGIERRLMEKIPEIVAVES 153 (186)
Q Consensus 114 ~V~Vrl~G-aC~gCpss~~Tl~~~Ie~~L~~~iPeI~~V~~ 153 (186)
.+.++..| .|.+|. ..|+++|+ .+|.+..+..
T Consensus 3 ~~~~~v~gm~C~~C~-------~~ie~~l~-~~~gv~~~~v 35 (74)
T 3dxs_X 3 KIQVGVTGMTCAACS-------NSVEAALM-NVNGVFKASV 35 (74)
T ss_dssp EEEEEEECCCSHHHH-------HHHHHHHH-TSTTEEEEEE
T ss_pred EEEEEECCcCCHHHH-------HHHHHHHh-cCCCEEEEEE
Confidence 34566777 565552 46777776 4788877653
No 30
>3byp_A CZRB protein; membrane protein, zinc transporter, transport protein; 1.70A {Thermus thermophilus} SCOP: d.52.9.1 PDB: 3byr_A
Probab=28.56 E-value=1.3e+02 Score=20.01 Aligned_cols=18 Identities=22% Similarity=0.379 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHhhCCCc
Q 029891 131 MTMKMGIERRLMEKIPEI 148 (186)
Q Consensus 131 ~Tl~~~Ie~~L~~~iPeI 148 (186)
-.+...||..|++++|.+
T Consensus 60 h~i~~~ie~~l~~~~~~~ 77 (94)
T 3byp_A 60 HRLCDELERALAQAFPGL 77 (94)
T ss_dssp HHHHHHHHHHHHHHSTTE
T ss_pred HHHHHHHHHHHHHHCCCC
Confidence 457789999999999976
No 31
>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc transporter, cell inner membrane, cell membrane, ION transport, iron transport; 2.90A {Escherichia coli k-12} PDB: 2qfi_A
Probab=27.03 E-value=2.5e+02 Score=22.71 Aligned_cols=20 Identities=10% Similarity=0.248 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHhhCCCcc
Q 029891 130 VMTMKMGIERRLMEKIPEIV 149 (186)
Q Consensus 130 ~~Tl~~~Ie~~L~~~iPeI~ 149 (186)
.-.+.+.||+.|++++|...
T Consensus 253 ~~~i~~~i~~~l~~~~~~~~ 272 (283)
T 3h90_A 253 AHMVADQVEQAILRRFPGSD 272 (283)
T ss_dssp HHHHHHHHHHHHHHHSTTCE
T ss_pred HHHHHHHHHHHHHHHCCCCe
Confidence 34677899999999999754
No 32
>3dex_A SAV_2001; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.70A {Streptomyces avermitilis} SCOP: c.47.1.0
Probab=26.46 E-value=1e+02 Score=22.78 Aligned_cols=38 Identities=11% Similarity=0.259 Sum_probs=27.9
Q ss_pred CEEEEEEcccCCCCcchHHHHHHHHHHHHHhhCCC-ccEEEEcc
Q 029891 113 NVVRLKLQGACGSCPSSVMTMKMGIERRLMEKIPE-IVAVESVA 155 (186)
Q Consensus 113 g~V~Vrl~GaC~gCpss~~Tl~~~Ie~~L~~~iPe-I~~V~~v~ 155 (186)
..|.|.| |..|....-. .+..+.|...||+ +.+|..+.
T Consensus 13 p~V~I~Y---C~~C~w~lRa--~~laqeLl~tF~~~l~eVsL~P 51 (107)
T 3dex_A 13 HRVQIEY---CTQCRWLPRA--AWLAQELLTTFETELTELALKP 51 (107)
T ss_dssp EEEEEEE---ETTTTCHHHH--HHHHHHHHHHSTTTEEEEEEEE
T ss_pred CEEEEEE---CCCCCChHHH--HHHHHHHHHhcccccceEEEEe
Confidence 3677777 7777777655 4889999999986 55676554
No 33
>3zzp_A TS9, ribosomal protein S6; protein folding, RNA-binding; 0.96A {Thermus thermophilus}
Probab=25.94 E-value=34 Score=23.59 Aligned_cols=23 Identities=17% Similarity=0.206 Sum_probs=20.8
Q ss_pred CCcHHHHHHHHHHhcchhhhCCC
Q 029891 81 PLTAENIESVLDEIRPYLISDGG 103 (186)
Q Consensus 81 ~l~~e~V~~~Ld~IRP~L~~dGG 103 (186)
.+++++++.+++++.-.|..+||
T Consensus 55 ~l~ee~~~~~vek~~~~i~~~Gg 77 (77)
T 3zzp_A 55 NLDQSQLQNEKEIIQRALENYGA 77 (77)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHHHHhcCC
Confidence 46789999999999999999887
No 34
>2kjw_A TS9, 30S ribosomal protein S6; S6 permutant, solution structure, backbone dynamics, folding, ribonucleoprotein, RNA-binding, rRNA-binding; NMR {Thermus thermophilus}
Probab=24.77 E-value=35 Score=24.56 Aligned_cols=29 Identities=21% Similarity=0.147 Sum_probs=24.4
Q ss_pred CCcHHHHHHHHHHhcchhhhCCCcEEEEE
Q 029891 81 PLTAENIESVLDEIRPYLISDGGNVALHE 109 (186)
Q Consensus 81 ~l~~e~V~~~Ld~IRP~L~~dGGdvelv~ 109 (186)
.+++++++..++++.-.|..+||.|.=++
T Consensus 55 ~l~ee~~~~~ve~~~~iI~~~gG~i~~ve 83 (96)
T 2kjw_A 55 NLDQSQLALEKEIIQRALENYGARVEKVE 83 (96)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHTCCCSCCE
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 45789999999999999999999875433
No 35
>2qn6_B Translation initiation factor 2 alpha subunit; initiation of translation, GTP-binding, nucleotide-binding, protein biosynthesis; HET: GDP; 2.15A {Sulfolobus solfataricus} SCOP: d.58.51.1 PDB: 2qmu_B* 3qsy_B*
Probab=24.64 E-value=35 Score=24.39 Aligned_cols=25 Identities=4% Similarity=0.194 Sum_probs=20.9
Q ss_pred HHHHHHHHHHhcchhhhCCCcEEEE
Q 029891 84 AENIESVLDEIRPYLISDGGNVALH 108 (186)
Q Consensus 84 ~e~V~~~Ld~IRP~L~~dGGdvelv 108 (186)
++.++.+++.++-.+..+||..+++
T Consensus 67 e~~L~~ai~~i~~~i~~~gG~~~v~ 91 (93)
T 2qn6_B 67 SEALNQIISNLIKIGKEENVDISVV 91 (93)
T ss_dssp HHHHHHHHHHHHHHHHHTTEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHhCCEEEEE
Confidence 4567777888999999999998875
No 36
>2yb5_A FUSC, putative fusidic acid resistance protein; translation, antibiotic resistance, zinc finger; 2.10A {Staphylococcus aureus}
Probab=24.23 E-value=25 Score=29.18 Aligned_cols=53 Identities=17% Similarity=0.174 Sum_probs=37.2
Q ss_pred hHHHHHHHHHHHHHhhCCCccEE-EEccCcccccccCHHHHHHHHHhhhhhhhc
Q 029891 129 SVMTMKMGIERRLMEKIPEIVAV-ESVADEETGLELNEENIEKVLEEIRPYLVG 181 (186)
Q Consensus 129 s~~Tl~~~Ie~~L~~~iPeI~~V-~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~ 181 (186)
...+++..+...+.+.||+...- ...-..-.-..|+.+.+|+.|++++||...
T Consensus 33 vi~a~k~~~~~kI~~~f~~~~~e~~~lL~~i~~~~l~~~~~e~~L~~Lk~yV~p 86 (215)
T 2yb5_A 33 SHKTQKDFLLNEINDIFKEKDIDISDFITSIDDVKLTKKKAEHLLNELKVYIQD 86 (215)
T ss_dssp TTHHHHHHHHHHHHHHHHTTTCCCTTHHHHHCCTTCCHHHHHHHHHHHGGGBCC
T ss_pred HHHHHHHHHHHHHHHHcccCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhcc
Confidence 34577888888888888876652 222112233467888999999999999864
No 37
>3lo3_A Uncharacterized conserved protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.38A {Colwellia psychrerythraea} SCOP: d.58.4.0
Probab=22.91 E-value=98 Score=21.51 Aligned_cols=27 Identities=19% Similarity=0.240 Sum_probs=23.9
Q ss_pred cHHHHHHHHHHhcchhhhCCCcEEEEE
Q 029891 83 TAENIESVLDEIRPYLISDGGNVALHE 109 (186)
Q Consensus 83 ~~e~V~~~Ld~IRP~L~~dGGdvelv~ 109 (186)
+.+..++..+.+.|.|+.+||.+-+.+
T Consensus 15 d~e~y~~Y~~~~~~~l~~~GG~~l~rg 41 (94)
T 3lo3_A 15 DAEKLQQYGARVASTLAKYSGEVLVKG 41 (94)
T ss_dssp CHHHHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred CHHHHHHHHHHHHHHHHHcCCEEEEEc
Confidence 478899999999999999999887766
No 38
>3myf_A Sensor protein; HPT, histidine kinase, PSI, MCSG, structural genomics, midwe for structural genomics, protein structure initiative, TRAN; HET: MSE; 1.80A {Shewanella SP}
Probab=22.86 E-value=26 Score=25.55 Aligned_cols=56 Identities=29% Similarity=0.369 Sum_probs=37.1
Q ss_pred EEcccCCCCcchH-HHHHHHHHHHHHhhCCCccEEEEccCcccccccCHHHHHHHHHhhhhhhh
Q 029891 118 KLQGACGSCPSSV-MTMKMGIERRLMEKIPEIVAVESVADEETGLELNEENIEKVLEEIRPYLV 180 (186)
Q Consensus 118 rl~GaC~gCpss~-~Tl~~~Ie~~L~~~iPeI~~V~~v~~~~~g~~~~~~~~~~~~~~~~~~~~ 180 (186)
|++|+|+.|.... ..+-..+|+.++..-|. ..++. .-.+|.. .++++.+.++.||.
T Consensus 58 kLkGaa~~~Ga~~L~~~~~~LE~~~r~~~~~-~~l~~-----~~~~L~~-ei~~v~~~~~~~l~ 114 (119)
T 3myf_A 58 KLHGASCYCGVPTTQRLCQEIESALKRQTPV-EDLEP-----EILELLD-ELTKVESAVKQVLS 114 (119)
T ss_dssp HHHHHHTTTTCHHHHHHHHHHHHHHHTTCCG-GGGHH-----HHHHHHH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCHHHHHHHHHHHHHHHHcCCCH-HHHHH-----HHHHHHH-HHHHHHHHHHHHHH
Confidence 5899999998866 35667899999875441 11111 1123433 67888888888886
No 39
>3iqt_A Signal transduction histidine-protein kinase BARA; histidine phosphotransfer domain, HTP, structural genomics, protein structure initiative; HET: MSE BTB; 1.40A {Escherichia coli}
Probab=22.60 E-value=27 Score=25.74 Aligned_cols=54 Identities=31% Similarity=0.394 Sum_probs=34.0
Q ss_pred EEcccCCCCcchH-HHHHHHHHHHHHhhCCCccEEEEccCccc-ccccCHHHHHHHHHhhhhhh
Q 029891 118 KLQGACGSCPSSV-MTMKMGIERRLMEKIPEIVAVESVADEET-GLELNEENIEKVLEEIRPYL 179 (186)
Q Consensus 118 rl~GaC~gCpss~-~Tl~~~Ie~~L~~~iPeI~~V~~v~~~~~-g~~~~~~~~~~~~~~~~~~~ 179 (186)
|++|+|+.|.... ..+-..+|+.++..-+. .+-+. -.+|.. .+++++++.+-|+
T Consensus 67 kLkGaa~~~Ga~~L~~~c~~LE~~~r~g~~~-------~~l~~~l~~L~d-el~~v~~~~~~~~ 122 (123)
T 3iqt_A 67 KLHGSCGYSGVPRMKNLCQLIEQQLRSGTKE-------EDLEPELLELLD-EMDNVAREASKIL 122 (123)
T ss_dssp HHHHHHTTSCCHHHHHHHHHHHHHHHTTCCG-------GGGHHHHHHHHH-HHHHHHHHHHHHT
T ss_pred HHHHHHHHcCHHHHHHHHHHHHHHHHcCCCH-------HHHHHHHHHHHH-HHHHHHHHHHHHh
Confidence 6899999999866 35667899999875541 01111 122323 5677777777665
No 40
>1q8l_A Copper-transporting ATPase 1; metal binding protein; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1s6o_A 1s6u_A
Probab=22.41 E-value=1.2e+02 Score=19.05 Aligned_cols=32 Identities=28% Similarity=0.682 Sum_probs=21.2
Q ss_pred EEEEEEcc-cCCCCcchHHHHHHHHHHHHHhhCCCccEEEE
Q 029891 114 VVRLKLQG-ACGSCPSSVMTMKMGIERRLMEKIPEIVAVES 153 (186)
Q Consensus 114 ~V~Vrl~G-aC~gCpss~~Tl~~~Ie~~L~~~iPeI~~V~~ 153 (186)
.+.+++.| .|.+|.. .|++.|.. +|.|..+..
T Consensus 10 ~~~~~v~gm~C~~C~~-------~ie~~l~~-~~GV~~~~v 42 (84)
T 1q8l_A 10 VLKMKVEGMTCHSCTS-------TIEGKIGK-LQGVQRIKV 42 (84)
T ss_dssp EEEEEECCTTTCSSCH-------HHHHHHHT-CTTEEEEEE
T ss_pred EEEEEECCcccHHHHH-------HHHHHHHc-CCCeEEEEE
Confidence 45667777 5888853 46776764 788877754
No 41
>3zxo_A Redox sensor histidine kinase response regulator; transferase; HET: MSE; 1.90A {Mycobacterium tuberculosis}
Probab=21.35 E-value=80 Score=21.44 Aligned_cols=27 Identities=26% Similarity=0.464 Sum_probs=19.1
Q ss_pred HhcchhhhCCCcEEEEEEeC--C-EEEEEE
Q 029891 93 EIRPYLISDGGNVALHEIDG--N-VVRLKL 119 (186)
Q Consensus 93 ~IRP~L~~dGGdvelv~vd~--g-~V~Vrl 119 (186)
-++-.++.|||.+.+..-.+ | .++++|
T Consensus 96 i~~~~~~~~gG~i~~~~~~~~~G~~~~i~l 125 (129)
T 3zxo_A 96 NLRQRAEQAGGEFTLASMPGASGTVLRWSA 125 (129)
T ss_dssp HHHHHHHHTTCEEEEEECTTTCCEEEEEEE
T ss_pred HHHHHHHHcCCEEEEeeCCCCCcEEEEEEe
Confidence 35666788999999888766 4 444544
No 42
>2qwz_A Phenylacetic acid degradation-related protein; putative thioesterase, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 2.15A {Silicibacter SP}
Probab=20.38 E-value=2.4e+02 Score=20.77 Aligned_cols=38 Identities=13% Similarity=0.392 Sum_probs=29.3
Q ss_pred CCcHHHHHHHHHHhcchhhhCCCcEEEEEEeCCEEEEEEcc
Q 029891 81 PLTAENIESVLDEIRPYLISDGGNVALHEIDGNVVRLKLQG 121 (186)
Q Consensus 81 ~l~~e~V~~~Ld~IRP~L~~dGGdvelv~vd~g~V~Vrl~G 121 (186)
+++.+++++.|+.--|... =++++++++++.+.+++.-
T Consensus 23 ~~~~~~~~~~l~~~~p~~~---lg~~v~~~~~g~~~~~~~v 60 (159)
T 2qwz_A 23 VFDKDGLSAYLEEVFPQIQ---GEFSIDALAKGEITMRLNV 60 (159)
T ss_dssp SSCHHHHHHHHHHHCGGGT---TTEEEEEECSSEEEEEECG
T ss_pred cCCHHHHHHHHHhhCcccc---CCeEEEEecCCEEEEEEEC
Confidence 5778899999986556554 3789999998888888753
Done!